BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780416|ref|YP_003064829.1| putative ferredoxin protein
[Candidatus Liberibacter asiaticus str. psy62]
         (113 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040093|gb|ACT56889.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 113

 Score =  233 bits (595), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT
Sbjct: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113


>gi|315122140|ref|YP_004062629.1| putative ferredoxin protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495542|gb|ADR52141.1| putative ferredoxin protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 112

 Score =  202 bits (515), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/113 (84%), Positives = 106/113 (93%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCILCKHTDCVEVCPVDCFYEGENFL IHP+ECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTFVVTENCILCKHTDCVEVCPVDCFYEGENFLVIHPEECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLE+WL+INS+Y++QWPNITTKK SLP+AA+MDGV+ KYE YFSP P  KNT
Sbjct: 61  PGLEMWLQINSKYSSQWPNITTKKASLPNAAEMDGVENKYENYFSPKP-AKNT 112


>gi|15967011|ref|NP_387364.1| putative ferredoxin protein [Sinorhizobium meliloti 1021]
 gi|307302479|ref|ZP_07582236.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti BL225C]
 gi|307316191|ref|ZP_07595635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti AK83]
 gi|15076284|emb|CAC47837.1| Putative ferredoxin protein [Sinorhizobium meliloti 1021]
 gi|306898031|gb|EFN28773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti AK83]
 gi|306903149|gb|EFN33739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti BL225C]
          Length = 112

 Score =  189 bits (481), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 99/109 (90%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL++WLK+N+E++TQWPNIT K++ LP A +MDGV++KYEKYFS  PG
Sbjct: 61  PGLDMWLKLNAEFSTQWPNITVKRDPLPEAKEMDGVEEKYEKYFSSEPG 109


>gi|150398307|ref|YP_001328774.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150029822|gb|ABR61939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 112

 Score =  189 bits (480), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 99/109 (90%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL++WLK+N++++TQWPNIT K++ LP A +MDG++ KYEKYFSP PG
Sbjct: 61  PGLDMWLKLNADFSTQWPNITVKRDPLPEATEMDGLEGKYEKYFSPEPG 109


>gi|227823779|ref|YP_002827752.1| putative ferredoxin protein [Sinorhizobium fredii NGR234]
 gi|227342781|gb|ACP26999.1| putative ferredoxin protein [Sinorhizobium fredii NGR234]
          Length = 112

 Score =  187 bits (475), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 98/109 (89%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL++WLK+N+++ATQWPNIT K++ LP A +MDGV+ KYE+YFS  PG
Sbjct: 61  PGLDMWLKLNADFATQWPNITVKRDPLPEAKEMDGVEGKYEQYFSEKPG 109


>gi|241206828|ref|YP_002977924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860718|gb|ACS58385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 112

 Score =  184 bits (466), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/112 (78%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KKE LP A  MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKEPLPEAKDMDGETGKFEKYFSEKPGSGD 112


>gi|222087731|ref|YP_002546268.1| ferredoxin III protein [Agrobacterium radiobacter K84]
 gi|221725179|gb|ACM28335.1| ferredoxin III protein [Agrobacterium radiobacter K84]
          Length = 116

 Score =  183 bits (465), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 98/112 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NC+ CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 5   MTYVVTDNCVRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN++YA  WPNIT K+++LP A ++DG + K+EKYFS NPG  +
Sbjct: 65  PGLDKWLKINADYAAIWPNITVKRDALPEAKELDGEEGKFEKYFSANPGAGD 116


>gi|319409357|emb|CBI83001.1| ferredoxin II [Bartonella schoenbuchensis R1]
          Length = 112

 Score =  183 bits (464), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 94/110 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N EYAT+WPN+TT+K  LP A +MDGV  K EKYFS NPG 
Sbjct: 61  PGLETWLELNREYATKWPNLTTQKSPLPQAKEMDGVPNKLEKYFSENPGS 110


>gi|209551386|ref|YP_002283303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537142|gb|ACI57077.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 112

 Score =  183 bits (464), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KK+ LP A +MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKDPLPEAKEMDGETGKFEKYFSEKPGSGD 112


>gi|222150213|ref|YP_002551170.1| ferredoxin [Agrobacterium vitis S4]
 gi|221737195|gb|ACM38158.1| ferredoxin [Agrobacterium vitis S4]
          Length = 116

 Score =  183 bits (464), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 98/109 (89%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 5   MTYIVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL+ WLKIN+E+A  WPNITTK+++LP A +MDGV+ K+E YFS  PG
Sbjct: 65  PGLDKWLKINAEFAQVWPNITTKRDALPEAKEMDGVEGKFELYFSEKPG 113


>gi|116254342|ref|YP_770180.1| ferredoxin II (FdII) [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258990|emb|CAK10099.1| putative ferredoxin II (FdII) [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 112

 Score =  182 bits (463), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 87/112 (77%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KK+ LP A  MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKDPLPEAKDMDGETGKFEKYFSEKPGSGD 112


>gi|27375268|ref|NP_766797.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27348404|dbj|BAC45422.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
          Length = 112

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/112 (75%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N++YA  WPNIT KKES   A + DG++ K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLSVNADYAKSWPNITQKKESPADAKEFDGMEGKFEKYFSPNPGSGD 112


>gi|86359603|ref|YP_471495.1| ferredoxin III protein [Rhizobium etli CFN 42]
 gi|190893876|ref|YP_001980418.1| ferredoxin III protein [Rhizobium etli CIAT 652]
 gi|86283705|gb|ABC92768.1| ferredoxin III protein [Rhizobium etli CFN 42]
 gi|190699155|gb|ACE93240.1| ferredoxin III protein [Rhizobium etli CIAT 652]
          Length = 112

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA+ WPNIT KK+ LP A +MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYASIWPNITVKKDPLPEAKEMDGQTGKFEKYFSEKPGSGD 112


>gi|121602702|ref|YP_988462.1| ferredoxin [Bartonella bacilliformis KC583]
 gi|120614879|gb|ABM45480.1| ferredoxin [Bartonella bacilliformis KC583]
          Length = 112

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 95/110 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YAT+WPN++T+K  LP A +MDG+  K EKYFS NPGG
Sbjct: 61  PGLEQWLELNLNYATKWPNLSTQKPPLPEAKEMDGIPNKLEKYFSENPGG 110


>gi|254473211|ref|ZP_05086609.1| ferredoxin II [Pseudovibrio sp. JE062]
 gi|211957932|gb|EEA93134.1| ferredoxin II [Pseudovibrio sp. JE062]
          Length = 112

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 95/109 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE W+++N+EYA +WPN+T KK+ LP AA+ DGVK+K EKYFS  PG
Sbjct: 61  PGLEKWVELNAEYAEKWPNLTVKKDQLPEAAEFDGVKEKLEKYFSEKPG 109


>gi|49474701|ref|YP_032743.1| ferredoxin II [Bartonella quintana str. Toulouse]
 gi|6984158|gb|AAF34779.1|AF228062_1 ferredoxin II [Bartonella quintana]
 gi|49240205|emb|CAF26673.1| Ferredoxin II [Bartonella quintana str. Toulouse]
          Length = 112

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 94/110 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YV+T+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVITDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YAT+WPN+TT+K+ LP A +MDGV  K EKYFS NPG 
Sbjct: 61  PGLEKWLELNLHYATKWPNLTTRKDPLPQAKEMDGVANKLEKYFSENPGS 110


>gi|319407755|emb|CBI81402.1| ferredoxin II [Bartonella sp. 1-1C]
          Length = 112

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 93/110 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDG+  K EKYFS NPG 
Sbjct: 61  PGLEKWLELNLRYAKKWPNLMTKKDPLPQAKEMDGIPNKLEKYFSENPGN 110


>gi|49476178|ref|YP_034219.1| ferredoxin II [Bartonella henselae str. Houston-1]
 gi|49238986|emb|CAF28286.1| Ferredoxin II [Bartonella henselae str. Houston-1]
          Length = 112

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 94/110 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N +YA +WPN+TT+K+ LP A +MDG+  K EKYFS NPG 
Sbjct: 61  PGLEKWLELNLQYANKWPNLTTRKDPLPQAKEMDGIPDKLEKYFSENPGS 110


>gi|159185361|ref|NP_355681.2| ferredoxin [Agrobacterium tumefaciens str. C58]
 gi|159140612|gb|AAK88466.2| ferredoxin [Agrobacterium tumefaciens str. C58]
          Length = 112

 Score =  179 bits (454), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 95/109 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL+ WLKIN+EYA  WPNIT K++ +P A +MDGV+ K E YFS  PG
Sbjct: 61  PGLDKWLKINTEYAAIWPNITIKRDPMPEAKEMDGVEGKLELYFSAEPG 109


>gi|86747676|ref|YP_484172.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
 gi|86570704|gb|ABD05261.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
          Length = 112

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 93/109 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++NSEYA  WPN+T KK+S   A   DGV+ K+EK+FSP PG
Sbjct: 61  PGLEKWLELNSEYAKTWPNLTQKKDSPDDAKTFDGVEGKFEKFFSPEPG 109


>gi|325294121|ref|YP_004279985.1| Ferredoxin [Agrobacterium sp. H13-3]
 gi|325061974|gb|ADY65665.1| Ferredoxin [Agrobacterium sp. H13-3]
          Length = 112

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 94/109 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL+ WLK+N+EYA  WPNIT K++ LP A +MDGV  K E YFS  PG
Sbjct: 61  PGLDKWLKLNTEYAAIWPNITIKRDPLPEAKEMDGVTGKLELYFSAEPG 109


>gi|153008467|ref|YP_001369682.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|239832850|ref|ZP_04681179.1| Ferredoxin-2 [Ochrobactrum intermedium LMG 3301]
 gi|151560355|gb|ABS13853.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|239825117|gb|EEQ96685.1| Ferredoxin-2 [Ochrobactrum intermedium LMG 3301]
          Length = 112

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K EKYFS  PG  +
Sbjct: 61  PGLDKWLELNTEYAAKWPNITAKKDALPEAKEMDGVAGKLEKYFSAEPGSGD 112


>gi|225628328|ref|ZP_03786362.1| Ferredoxin-2 [Brucella ceti str. Cudo]
 gi|225616174|gb|EEH13222.1| Ferredoxin-2 [Brucella ceti str. Cudo]
          Length = 138

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 27  MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 86

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 87  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLEQYFSPEAGSGD 138


>gi|256061798|ref|ZP_05451933.1| Ferredoxin-2 [Brucella neotomae 5K33]
 gi|261325800|ref|ZP_05964997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella neotomae 5K33]
 gi|261301780|gb|EEY05277.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella neotomae 5K33]
          Length = 112

 Score =  178 bits (451), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLERYFSPEAGSGD 112


>gi|319406280|emb|CBI79917.1| ferredoxin II [Bartonella sp. AR 15-3]
          Length = 112

 Score =  177 bits (450), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 92/110 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDGV  K E YFS NPG 
Sbjct: 61  PGLEKWLELNLNYANKWPNLMTKKDPLPQAKEMDGVLNKLETYFSENPGS 110


>gi|17986561|ref|NP_539195.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|23502624|ref|NP_698751.1| ferredoxin A [Brucella suis 1330]
 gi|62290637|ref|YP_222430.1| FdxA, ferredoxin A [Brucella abortus bv. 1 str. 9-941]
 gi|82700551|ref|YP_415125.1| 7Fe ferredoxin [Brucella melitensis biovar Abortus 2308]
 gi|148559196|ref|YP_001259611.1| ferredoxin A [Brucella ovis ATCC 25840]
 gi|161619692|ref|YP_001593579.1| ferredoxin-2 [Brucella canis ATCC 23365]
 gi|163845344|ref|YP_001622999.1| hypothetical protein BSUIS_B1243 [Brucella suis ATCC 23445]
 gi|189024849|ref|YP_001935617.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225853217|ref|YP_002733450.1| ferredoxin-2 [Brucella melitensis ATCC 23457]
 gi|237816138|ref|ZP_04595133.1| Ferredoxin-2 [Brucella abortus str. 2308 A]
 gi|254689926|ref|ZP_05153180.1| Ferredoxin-2 [Brucella abortus bv. 6 str. 870]
 gi|254694418|ref|ZP_05156246.1| Ferredoxin-2 [Brucella abortus bv. 3 str. Tulya]
 gi|254698077|ref|ZP_05159905.1| Ferredoxin-2 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700419|ref|ZP_05162247.1| Ferredoxin-2 [Brucella suis bv. 5 str. 513]
 gi|254703538|ref|ZP_05165366.1| Ferredoxin-2 [Brucella suis bv. 3 str. 686]
 gi|254708374|ref|ZP_05170202.1| Ferredoxin-2 [Brucella pinnipedialis M163/99/10]
 gi|254708773|ref|ZP_05170584.1| Ferredoxin-2 [Brucella pinnipedialis B2/94]
 gi|254719760|ref|ZP_05181571.1| Ferredoxin-2 [Brucella sp. 83/13]
 gi|254730961|ref|ZP_05189539.1| Ferredoxin-2 [Brucella abortus bv. 4 str. 292]
 gi|256030299|ref|ZP_05443913.1| Ferredoxin-2 [Brucella pinnipedialis M292/94/1]
 gi|256045368|ref|ZP_05448262.1| Ferredoxin-2 [Brucella melitensis bv. 1 str. Rev.1]
 gi|256114332|ref|ZP_05455070.1| Ferredoxin-2 [Brucella melitensis bv. 3 str. Ether]
 gi|256160472|ref|ZP_05458161.1| Ferredoxin-2 [Brucella ceti M490/95/1]
 gi|256255679|ref|ZP_05461215.1| Ferredoxin-2 [Brucella ceti B1/94]
 gi|256258181|ref|ZP_05463717.1| Ferredoxin-2 [Brucella abortus bv. 9 str. C68]
 gi|256263294|ref|ZP_05465826.1| 7Fe ferredoxin [Brucella melitensis bv. 2 str. 63/9]
 gi|256370173|ref|YP_003107684.1| ferredoxin A [Brucella microti CCM 4915]
 gi|260167973|ref|ZP_05754784.1| ferredoxin A [Brucella sp. F5/99]
 gi|260547125|ref|ZP_05822863.1| 7Fe ferredoxin [Brucella abortus NCTC 8038]
 gi|260565738|ref|ZP_05836221.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|260568844|ref|ZP_05839312.1| ferredoxin II [Brucella suis bv. 4 str. 40]
 gi|260755461|ref|ZP_05867809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 6 str. 870]
 gi|260758683|ref|ZP_05871031.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 4 str. 292]
 gi|260762518|ref|ZP_05874855.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884479|ref|ZP_05896093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 9 str. C68]
 gi|261214732|ref|ZP_05929013.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261222885|ref|ZP_05937166.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti B1/94]
 gi|261315873|ref|ZP_05955070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M163/99/10]
 gi|261316266|ref|ZP_05955463.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis B2/94]
 gi|261750917|ref|ZP_05994626.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 5 str. 513]
 gi|261754171|ref|ZP_05997880.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 3 str. 686]
 gi|261757415|ref|ZP_06001124.1| 7Fe ferredoxin [Brucella sp. F5/99]
 gi|265984779|ref|ZP_06097514.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella sp. 83/13]
 gi|265987330|ref|ZP_06099887.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M292/94/1]
 gi|265991796|ref|ZP_06104353.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995636|ref|ZP_06108193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|265998844|ref|ZP_06111401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M490/95/1]
 gi|294851011|ref|ZP_06791687.1| ferredoxin [Brucella sp. NVSL 07-0026]
 gi|297249031|ref|ZP_06932739.1| ferredoxin-2 [Brucella abortus bv. 5 str. B3196]
 gi|306839456|ref|ZP_07472264.1| Ferredoxin-2 [Brucella sp. NF 2653]
 gi|306841481|ref|ZP_07474181.1| Ferredoxin-2 [Brucella sp. BO2]
 gi|306844752|ref|ZP_07477337.1| Ferredoxin-2 [Brucella sp. BO1]
 gi|17982169|gb|AAL51459.1| ferredoxin ii [Brucella melitensis bv. 1 str. 16M]
 gi|23348629|gb|AAN30666.1| ferredoxin A [Brucella suis 1330]
 gi|62196769|gb|AAX75069.1| FdxA, ferredoxin A [Brucella abortus bv. 1 str. 9-941]
 gi|82616652|emb|CAJ11734.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Brucella melitensis biovar Abortus 2308]
 gi|148370453|gb|ABQ60432.1| ferredoxin A [Brucella ovis ATCC 25840]
 gi|161336503|gb|ABX62808.1| Ferredoxin-2 [Brucella canis ATCC 23365]
 gi|163676067|gb|ABY40177.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020421|gb|ACD73143.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225641582|gb|ACO01496.1| Ferredoxin-2 [Brucella melitensis ATCC 23457]
 gi|237788600|gb|EEP62813.1| Ferredoxin-2 [Brucella abortus str. 2308 A]
 gi|256000336|gb|ACU48735.1| ferredoxin A [Brucella microti CCM 4915]
 gi|260095490|gb|EEW79368.1| 7Fe ferredoxin [Brucella abortus NCTC 8038]
 gi|260151111|gb|EEW86206.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|260154228|gb|EEW89310.1| ferredoxin II [Brucella suis bv. 4 str. 40]
 gi|260669001|gb|EEX55941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 4 str. 292]
 gi|260672944|gb|EEX59765.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675569|gb|EEX62390.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 6 str. 870]
 gi|260874007|gb|EEX81076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 9 str. C68]
 gi|260916339|gb|EEX83200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|260921469|gb|EEX88122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti B1/94]
 gi|261295489|gb|EEX98985.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis B2/94]
 gi|261304899|gb|EEY08396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M163/99/10]
 gi|261737399|gb|EEY25395.1| 7Fe ferredoxin [Brucella sp. F5/99]
 gi|261740670|gb|EEY28596.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 5 str. 513]
 gi|261743924|gb|EEY31850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 3 str. 686]
 gi|262553533|gb|EEZ09302.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M490/95/1]
 gi|262766920|gb|EEZ12538.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002752|gb|EEZ15155.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093261|gb|EEZ17358.1| 7Fe ferredoxin [Brucella melitensis bv. 2 str. 63/9]
 gi|264659527|gb|EEZ29788.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M292/94/1]
 gi|264663371|gb|EEZ33632.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella sp. 83/13]
 gi|294821654|gb|EFG38650.1| ferredoxin [Brucella sp. NVSL 07-0026]
 gi|297174164|gb|EFH33521.1| ferredoxin-2 [Brucella abortus bv. 5 str. B3196]
 gi|306274924|gb|EFM56694.1| Ferredoxin-2 [Brucella sp. BO1]
 gi|306288445|gb|EFM59801.1| Ferredoxin-2 [Brucella sp. BO2]
 gi|306405401|gb|EFM61672.1| Ferredoxin-2 [Brucella sp. NF 2653]
 gi|326409774|gb|ADZ66839.1| 7Fe ferredoxin [Brucella melitensis M28]
 gi|326539491|gb|ADZ87706.1| ferredoxin-2 [Brucella melitensis M5-90]
          Length = 112

 Score =  177 bits (450), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLEQYFSPEAGSGD 112


>gi|319899400|ref|YP_004159497.1| ferredoxin II [Bartonella clarridgeiae 73]
 gi|319403368|emb|CBI76927.1| ferredoxin II [Bartonella clarridgeiae 73]
          Length = 112

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 92/110 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M Y+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYIVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDGV  K EKYFS NPG 
Sbjct: 61  PGLEKWLELNLNYANKWPNLMTKKDPLPQAKEMDGVPDKLEKYFSENPGS 110


>gi|110635706|ref|YP_675914.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110286690|gb|ABG64749.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 138

 Score =  177 bits (449), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 93/109 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 27  MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 86

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N++YA +WPNIT KKE    A   DG+++K+EKYFSP PG
Sbjct: 87  PGLEKWLQVNADYAEKWPNITAKKEPPADAKDWDGIEEKFEKYFSPEPG 135


>gi|118591278|ref|ZP_01548676.1| ferredoxin III protein [Stappia aggregata IAM 12614]
 gi|118435950|gb|EAV42593.1| ferredoxin III protein [Stappia aggregata IAM 12614]
          Length = 110

 Score =  176 bits (446), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 95/110 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE W++IN+EY+ +WPNIT KK+ LP A + DG + K+EK+FSPNP  
Sbjct: 61  PGLEKWIEINAEYSEKWPNITEKKDPLPDAEEFDGKENKFEKFFSPNPAS 110


>gi|91974761|ref|YP_567420.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
 gi|91681217|gb|ABE37519.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
          Length = 112

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 94/109 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N+EYA  WPN+T KKE+   A + +G++ K+EK+FSP PG
Sbjct: 61  PGLEKWLELNTEYAKSWPNLTQKKEAPGDAKQYEGMEGKFEKFFSPEPG 109


>gi|85713776|ref|ZP_01044766.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
 gi|85699680|gb|EAQ37547.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 93/109 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N+EYA  WPNIT KKE+ P A + +G + K+EKYFSPNPG
Sbjct: 61  PGLEKWLEVNAEYAKSWPNITQKKEAPPDAKEFEGQEGKFEKYFSPNPG 109


>gi|254502406|ref|ZP_05114557.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438477|gb|EEE45156.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 110

 Score =  175 bits (444), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           PGLE W++IN+EY+ +WPNIT KK+ +P A K DG + K EKYFSPNP
Sbjct: 61  PGLEKWIEINAEYSEKWPNITEKKDPMPDADKFDGQENKLEKYFSPNP 108


>gi|328542019|ref|YP_004302128.1| Ferredoxin II [polymorphum gilvum SL003B-26A1]
 gi|326411769|gb|ADZ68832.1| Ferredoxin II [Polymorphum gilvum SL003B-26A1]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 96/112 (85%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN-PGGK 111
           PGLE W++IN+EYA +WPNIT KK+ LP AA+ DG   K+E+YFSPN P GK
Sbjct: 61  PGLEKWIEINAEYAAKWPNITVKKDPLPEAAEFDGKAGKFEQYFSPNGPDGK 112


>gi|115522155|ref|YP_779066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115516102|gb|ABJ04086.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+E+A  WPNIT KK++   A   DG + K++KYFS  PG  +
Sbjct: 61  PGLEQWLSLNAEHAKSWPNITQKKDAPADAKSFDGAEGKFDKYFSAEPGSGD 112


>gi|319404795|emb|CBI78396.1| ferredoxin II [Bartonella rochalimae ATCC BAA-1498]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 92/110 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDG+  K EK FS NPG 
Sbjct: 61  PGLEKWLELNLRYAKKWPNLMTKKDPLPQAKEMDGIPNKLEKCFSENPGN 110


>gi|148258714|ref|YP_001243299.1| ferredoxin II [Bradyrhizobium sp. BTAi1]
 gi|146410887|gb|ABQ39393.1| ferredoxin II [Bradyrhizobium sp. BTAi1]
          Length = 112

 Score =  174 bits (442), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+EYA  WPNIT KK+    A + DG   K+EKYFSP PG  +
Sbjct: 61  PGLEKWLGVNAEYAKAWPNITQKKDPPGDAKEHDGEAGKFEKYFSPKPGAGD 112


>gi|254714616|ref|ZP_05176427.1| Ferredoxin-2 [Brucella ceti M644/93/1]
 gi|254717514|ref|ZP_05179325.1| Ferredoxin-2 [Brucella ceti M13/05/1]
 gi|261219349|ref|ZP_05933630.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M13/05/1]
 gi|261322410|ref|ZP_05961607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M644/93/1]
 gi|260924438|gb|EEX91006.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M13/05/1]
 gi|261295100|gb|EEX98596.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M644/93/1]
          Length = 112

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++L  A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALLEAKEMDGVAGKLEQYFSPEAGSGD 112


>gi|240851256|ref|YP_002972659.1| ferredoxin II [Bartonella grahamii as4aup]
 gi|240268379|gb|ACS51967.1| ferredoxin II [Bartonella grahamii as4aup]
          Length = 113

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 92/110 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PDTE
Sbjct: 1   MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YA +WPN+TTKK+ LP A +MDGV  K EKYFS NPG 
Sbjct: 61  PGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGS 110


>gi|163869172|ref|YP_001610424.1| ferredoxin II [Bartonella tribocorum CIP 105476]
 gi|161018871|emb|CAK02429.1| ferredoxin II [Bartonella tribocorum CIP 105476]
          Length = 113

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 92/110 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PDTE
Sbjct: 1   MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIVPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YA +WPN+TTKK+ LP A +MDGV  K EKYFS NPG 
Sbjct: 61  PGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGS 110


>gi|297180169|gb|ADI16391.1| ferredoxin [uncultured bacterium HF130_12L15]
          Length = 112

 Score =  174 bits (440), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 91/109 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N+EYA +WPNIT KKE    A + DGV+ K+EKYFS   G
Sbjct: 61  PGLEKWLQVNTEYADKWPNITAKKEPPADAKEFDGVEGKFEKYFSAEAG 109


>gi|39933566|ref|NP_945842.1| ferredoxin II [Rhodopseudomonas palustris CGA009]
 gi|192288920|ref|YP_001989525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Rhodopseudomonas palustris TIE-1]
 gi|39647412|emb|CAE25933.1| ferredoxin II [Rhodopseudomonas palustris CGA009]
 gi|192282669|gb|ACE99049.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 112

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++NSEYA  WPN+T KK++   A + DG   K+EKYFS  PG  +
Sbjct: 61  PGLEKWLELNSEYAKTWPNLTQKKDAPADAKEFDGQAGKFEKYFSSEPGSGD 112


>gi|294678312|ref|YP_003578927.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
 gi|119953|sp|P18082|FER2_RHOCA RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II; Short=FdII
 gi|46012|emb|CAA37388.1| unnamed protein product [Rhodobacter capsulatus]
 gi|151914|gb|AAA26108.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
 gi|294477132|gb|ADE86520.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
          Length = 112

 Score =  173 bits (439), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E W++ N  YA+QWP IT KK+ +P   K DG   K EKYFSPNPG
Sbjct: 61  PGMEDWVEFNRTYASQWPVITIKKDPMPDHKKYDGETGKREKYFSPNPG 109


>gi|220921711|ref|YP_002497012.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219946317|gb|ACL56709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 112

 Score =  173 bits (438), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N++ A  WPNIT KK +   A + DGV  KYE +FSPNPG  +
Sbjct: 61  PGLEKWLKLNADLAKSWPNITQKKPAPADAKEWDGVAGKYEAHFSPNPGSGD 112


>gi|114706527|ref|ZP_01439428.1| ferredoxin II [Fulvimarina pelagi HTCC2506]
 gi|114537919|gb|EAU41042.1| ferredoxin II [Fulvimarina pelagi HTCC2506]
          Length = 112

 Score =  173 bits (438), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYLVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA +WPNIT  KE    A K DG + K+EKYFS  PG  +
Sbjct: 61  PGLDHWLKINTEYAEKWPNITIAKEKPEDAEKYDGEEGKFEKYFSAEPGSGD 112


>gi|75674609|ref|YP_317030.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter winogradskyi
           Nb-255]
 gi|74419479|gb|ABA03678.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 112

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 93/109 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E WL++N+EYA +WPNIT KKE+ P A   +G + K+EKYFSP+PG
Sbjct: 61  PGVEKWLEVNAEYAGRWPNITQKKETPPDAKDFEGQEGKFEKYFSPDPG 109


>gi|13473302|ref|NP_104869.1| ferredoxin II [Mesorhizobium loti MAFF303099]
 gi|14024050|dbj|BAB50655.1| ferredoxin II [Mesorhizobium loti MAFF303099]
          Length = 112

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL+ WL+IN+EYA +WPNIT KKE    A   DG   K+EKYFS  PG
Sbjct: 61  PGLDKWLQINTEYAEKWPNITAKKEPPADAKTFDGEAGKFEKYFSAEPG 109


>gi|307943599|ref|ZP_07658943.1| ferredoxin-1 [Roseibium sp. TrichSKD4]
 gi|307773229|gb|EFO32446.1| ferredoxin-1 [Roseibium sp. TrichSKD4]
          Length = 114

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 92/107 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 5   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           PGLE W+++N+EY+ +WPNIT KK+ LP A + DG K K EKYFSPN
Sbjct: 65  PGLEKWIELNAEYSEKWPNITEKKDELPEAKEFDGKKDKLEKYFSPN 111


>gi|92116127|ref|YP_575856.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91799021|gb|ABE61396.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 112

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 93/109 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N++YA  WPN+T KK++ P A + +G + K+EKYFSPNPG
Sbjct: 61  PGLEKWLELNADYAKSWPNLTQKKDAPPDAKEFEGQEGKFEKYFSPNPG 109


>gi|319781059|ref|YP_004140535.1| ferredoxin II [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166947|gb|ADV10485.1| ferredoxin II [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 112

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL+ WL++N+EYA +WPNIT KKE    A   DG   K+EKYFS  PG
Sbjct: 61  PGLDKWLQVNTEYAEKWPNITAKKEPPADAKSFDGEAGKFEKYFSAEPG 109


>gi|300024664|ref|YP_003757275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526485|gb|ADJ24954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 112

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV E CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVNEKCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL++N +YA  WPNIT KK +LP A  +     K+EKYFSPN G  +
Sbjct: 61  PGMERWLELNRQYADNWPNITAKKAALPDADDIKDEPGKFEKYFSPNAGSGD 112


>gi|304394151|ref|ZP_07376074.1| ferredoxin [Ahrensia sp. R2A130]
 gi|303293591|gb|EFL87968.1| ferredoxin [Ahrensia sp. R2A130]
          Length = 112

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYLVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLK+N+E+A +WPNI  K E    A K DG K K+EKYFS  PG  N
Sbjct: 61  PGLDNWLKVNTEFAEKWPNIIAKGEQPGDAEKFDGEKGKFEKYFSAEPGEGN 112


>gi|209883218|ref|YP_002287075.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
 gi|209871414|gb|ACI91210.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
          Length = 112

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P LE WL +N+EYA  WPNIT KK+    A + DG + K+++YFSPNPG
Sbjct: 61  PDLEKWLGVNAEYAKTWPNITQKKDPPDDAKEFDGAEGKFDQYFSPNPG 109


>gi|316931530|ref|YP_004106512.1| ferredoxin [Rhodopseudomonas palustris DX-1]
 gi|315599244|gb|ADU41779.1| ferredoxin [Rhodopseudomonas palustris DX-1]
          Length = 112

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+E+A  WPN+T KK++   A + DG   K++KYFS  PG  +
Sbjct: 61  PGLEKWLELNAEHAKTWPNLTQKKDAPADAKEFDGQAGKFDKYFSSEPGSGD 112


>gi|163759999|ref|ZP_02167083.1| ferredoxin II [Hoeflea phototrophica DFL-43]
 gi|162282957|gb|EDQ33244.1| ferredoxin II [Hoeflea phototrophica DFL-43]
          Length = 112

 Score =  171 bits (432), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E WL +N+EYA +WPNIT K+++   A   DG + K+EKYFS  PG
Sbjct: 61  PGMEKWLVVNTEYADKWPNITVKRDAPDDAKDFDGTEGKFEKYFSAEPG 109


>gi|170742913|ref|YP_001771568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168197187|gb|ACA19134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 112

 Score =  171 bits (432), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WLK+N+++A  WPNIT KK +   A + DGV  K++ +FS NPG
Sbjct: 61  PGLERWLKLNADFAKNWPNITQKKTAPSDAKEWDGVAGKFDAHFSSNPG 109


>gi|299132817|ref|ZP_07026012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298592954|gb|EFI53154.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 112

 Score =  170 bits (430), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
             LE WL +N+EYA  WPNIT KK++   A + DG + K++ YFSPNPG
Sbjct: 61  ADLEKWLGVNAEYAKTWPNITQKKDAPADAKEFDGAEGKFDNYFSPNPG 109


>gi|260461458|ref|ZP_05809705.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032528|gb|EEW33792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 112

 Score =  170 bits (430), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GL+ WL+IN+EYA +WPNIT KKE    A   DG   K+EKYFS  PG
Sbjct: 61  SGLDKWLQINTEYAEKWPNITAKKEPPADAKTFDGEAGKFEKYFSAEPG 109


>gi|254512440|ref|ZP_05124507.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221536151|gb|EEE39139.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 112

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E W++ N +Y+ QWP I TKK+ +P A + DG + K EKYFS  PG
Sbjct: 61  PGMEEWVEFNRKYSEQWPVIVTKKDPMPDAEERDGEEGKMEKYFSEAPG 109


>gi|90420289|ref|ZP_01228197.1| ferredoxin II [Aurantimonas manganoxydans SI85-9A1]
 gi|90335623|gb|EAS49373.1| ferredoxin II [Aurantimonas manganoxydans SI85-9A1]
          Length = 112

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+ DCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYLVTDNCIRCKYMDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P L+ WLKIN+EYA +WPNIT K+++   A K DG   K+EKYFS  PG
Sbjct: 61  PNLDKWLKINTEYAEKWPNITIKRDAPADAEKFDGEDGKFEKYFSAEPG 109


>gi|90422071|ref|YP_530441.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90104085|gb|ABD86122.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 112

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 91/109 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTEACIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N+EY+  WPNIT KK++   A + + V+ K++KYFS  PG
Sbjct: 61  PGLEKWLEVNAEYSKTWPNITQKKDAPADAKEFESVEGKFDKYFSAEPG 109


>gi|298293647|ref|YP_003695586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Starkeya
           novella DSM 506]
 gi|296930158|gb|ADH90967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Starkeya
           novella DSM 506]
          Length = 111

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCV VCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVSVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL +N+EYA  WPNIT +K+ LP A + DGV  K + Y SP PG ++
Sbjct: 61  PGLDKWLSLNAEYAKVWPNITDRKDPLPDAKEWDGVPDKLQ-YLSPEPGKQD 111


>gi|56696303|ref|YP_166660.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678040|gb|AAV94706.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 112

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENALVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E W++ N +Y+  WP I TKK+ LP A + DG   K EKYFS  PG
Sbjct: 61  PGMEQWVEFNRKYSEMWPVIVTKKDPLPEAEERDGESGKMEKYFSEAPG 109


>gi|260434065|ref|ZP_05788036.1| ferredoxin-1 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417893|gb|EEX11152.1| ferredoxin-1 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 112

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E W++ N +YA  WP I +KK+ LP A K DG + K EKYFS  PG
Sbjct: 61  PGMEQWVEFNRKYAEIWPVIVSKKDPLPDAEKHDGEEGKMEKYFSEAPG 109


>gi|170750106|ref|YP_001756366.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656628|gb|ACB25683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 112

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             L+ WLK+N++YA  WPNIT KKE+   A + DG   K E +FSPNPG  +
Sbjct: 61  SNLDTWLKLNADYAKSWPNITQKKEAPADAKEWDGKTGKLEAHFSPNPGSGD 112


>gi|163853279|ref|YP_001641322.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|218532095|ref|YP_002422911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240140687|ref|YP_002965167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methylobacterium extorquens AM1]
 gi|254563202|ref|YP_003070297.1| ferredoxin II [Methylobacterium extorquens DM4]
 gi|163664884|gb|ABY32251.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
 gi|218524398|gb|ACK84983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240010664|gb|ACS41890.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methylobacterium extorquens AM1]
 gi|254270480|emb|CAX26480.1| ferredoxin II [Methylobacterium extorquens DM4]
          Length = 112

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++YA  WPNIT KK++   A + DGV  K E +FSPNPG  +
Sbjct: 61  GDLESWLKLNADYAKTWPNITQKKDAPSDAKQWDGVSGKLEAHFSPNPGSGD 112


>gi|217977550|ref|YP_002361697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
 gi|217502926|gb|ACK50335.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
          Length = 112

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV ENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVLENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PG+E W+ +N++ A  WPNIT K+E+ P A + DG   K++++FSP PG
Sbjct: 61  PGIEQWITLNADMAQSWPNITMKREAAPDAKQFDGRPGKFKEFFSPEPG 109


>gi|188583532|ref|YP_001926977.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179347030|gb|ACB82442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 112

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++YA  WPNIT KK++   A + DGV  K E +FSPNPG  +
Sbjct: 61  GNLESWLKLNADYAKTWPNITQKKDAPTDAKQWDGVGGKLEAHFSPNPGSGD 112


>gi|119384563|ref|YP_915619.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Paracoccus denitrificans PD1222]
 gi|119374330|gb|ABL69923.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Paracoccus
           denitrificans PD1222]
          Length = 112

 Score =  166 bits (421), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI+CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIMCKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +YA  WP IT KK+ +P   +MDG   K EKYFS  PG
Sbjct: 61  PDMDKWVEFNRKYAESWPVITRKKDPMPGYQEMDGAPGKLEKYFSEAPG 109


>gi|159043337|ref|YP_001532131.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911097|gb|ABV92530.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 112

 Score =  166 bits (421), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSEAWPVIITKKDQLPDAEERDGEQGKLEKYFSEAPG 109


>gi|85714492|ref|ZP_01045480.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
 gi|85698939|gb|EAQ36808.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  166 bits (421), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P LE WLK+N+EYA  WPNIT K+++   A   DGV  K E+YFS NPG
Sbjct: 61  PDLENWLKLNAEYAAVWPNITIKRDAPADAKTFDGVAGKLEQYFSANPG 109


>gi|158421856|ref|YP_001523148.1| ferredoxin II [Azorhizobium caulinodans ORS 571]
 gi|158328745|dbj|BAF86230.1| ferredoxin II [Azorhizobium caulinodans ORS 571]
          Length = 111

 Score =  166 bits (420), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 89/109 (81%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCILCK+TDCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTENCILCKYTDCVAVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL +N+EYA  WPNIT K+++LP A + DG   K +K FS  PG
Sbjct: 61  PGLEKWLSLNAEYAKTWPNITLKRDALPDAKEWDGKPGKEDK-FSAEPG 108


>gi|149916594|ref|ZP_01905108.1| ferredoxin II [Roseobacter sp. AzwK-3b]
 gi|149809521|gb|EDM69381.1| ferredoxin II [Roseobacter sp. AzwK-3b]
          Length = 112

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ +P A + DG + K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQMPDAEERDGEEGKLEKYFSEKPG 109


>gi|92119089|ref|YP_578818.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801983|gb|ABE64358.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 133

 Score =  165 bits (418), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AI  D+E
Sbjct: 22  MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIFADSE 81

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WLK+N+EYA  WPNIT K+++   A   DGV  K E+YFS NPG
Sbjct: 82  PGLENWLKLNAEYAAVWPNITIKRDAPADAKAFDGVADKLEQYFSANPG 130


>gi|75676994|ref|YP_319415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter winogradskyi
           Nb-255]
 gi|74421864|gb|ABA06063.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 112

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P LE WLK+N+EY+  WPNIT K+++   A   DGV  K E+YFS NPG
Sbjct: 61  PDLENWLKLNAEYSAVWPNITIKRDAPADAKTFDGVAGKLEQYFSANPG 109


>gi|312112940|ref|YP_004010536.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218069|gb|ADP69437.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 114

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 88/113 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK TDCVEVCPVDCFYEG N L I PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVLDACIKCKFTDCVEVCPVDCFYEGANMLVISPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLE +L++N EYA  WPNIT KK  LP   K     +K+EKYFSP+PG  ++
Sbjct: 61  PGLEKFLEVNREYAALWPNITVKKPPLPDYEKFQQEAEKFEKYFSPDPGEGDS 113


>gi|83308697|emb|CAJ01607.1| ferredoxin ii [Methylocapsa acidiphila]
          Length = 112

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV ENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVVENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL+ WL++N + A  WPN+T K+E++P A   DG   K++++FS  PG  +
Sbjct: 61  RGLDKWLELNRDMAKAWPNVTVKREAMPDAKAFDGRPGKFDEFFSAEPGSGD 112


>gi|154252147|ref|YP_001412971.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Parvibaculum lavamentivorans DS-1]
 gi|154156097|gb|ABS63314.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 112

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYIVTDACIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGLE WL++N+EYA++WPNIT K++    A    GV  K+E++FS  PG
Sbjct: 61  PGLEKWLELNTEYASKWPNITIKRDPPADADDWQGVSGKFEEHFSAEPG 109


>gi|146277598|ref|YP_001167757.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555839|gb|ABP70452.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 112

 Score =  163 bits (413), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MAYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E WL++N +YA  WP I TKK+ LP AA +DG   K   +FS  PG
Sbjct: 61  PDMESWLELNRKYAEIWPVIVTKKDPLPEAADLDGQTGKLATHFSEKPG 109


>gi|110679119|ref|YP_682126.1| ferredoxin II [Roseobacter denitrificans OCh 114]
 gi|109455235|gb|ABG31440.1| ferredoxin II [Roseobacter denitrificans OCh 114]
          Length = 112

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP+A + DG   K EKYFS NPG
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPTAEERDGETGKLEKYFSENPG 109


>gi|163736062|ref|ZP_02143485.1| ferredoxin II [Roseobacter litoralis Och 149]
 gi|161390658|gb|EDQ15004.1| ferredoxin II [Roseobacter litoralis Och 149]
          Length = 112

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCISCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP+A + DG   K EKYFS NPG
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPTAEERDGETGKLEKYFSENPG 109


>gi|114764921|ref|ZP_01444094.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542633|gb|EAU45657.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 112

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I +KK+ +P A + DG   K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIISKKDPMPEAEERDGEPGKMEKYFSEAPG 109


>gi|254459551|ref|ZP_05072967.1| ferredoxin II [Rhodobacterales bacterium HTCC2083]
 gi|206676140|gb|EDZ40627.1| ferredoxin II [Rhodobacteraceae bacterium HTCC2083]
          Length = 112

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQLPDAEERDGEEGKLEKYFSEKPG 109


>gi|163738512|ref|ZP_02145927.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|163743577|ref|ZP_02150954.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161383162|gb|EDQ07554.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161388433|gb|EDQ12787.1| ferredoxin-2 [Phaeobacter gallaeciensis BS107]
          Length = 112

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +Y+  WP I +KK+ LP A + DG + K EKYFS  PG
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPLPEAEERDGEEGKLEKYFSEAPG 109


>gi|254475184|ref|ZP_05088570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214029427|gb|EEB70262.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 112

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +Y+  WP I +KK+ LP A + DG + K EKYFS  PG
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPLPDAEERDGEEGKLEKYFSEAPG 109


>gi|126729324|ref|ZP_01745138.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126710314|gb|EBA09366.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 112

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVIDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+ +WP I TKK+ LP A + DG   K  KYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSEEWPVIITKKDPLPEAEERDGETDKVTKYFSEKPG 109


>gi|86137858|ref|ZP_01056434.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85825450|gb|EAQ45649.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 112

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +Y+  WP I +KK+ +P A + DG + K EKYFS  PG
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPMPEAEERDGEEGKLEKYFSEAPG 109


>gi|77462982|ref|YP_352486.1| ferredoxin II [Rhodobacter sphaeroides 2.4.1]
 gi|126461856|ref|YP_001042970.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221638838|ref|YP_002525100.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides KD131]
 gi|332557858|ref|ZP_08412180.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides WS8N]
 gi|77387400|gb|ABA78585.1| ferredoxin II [Rhodobacter sphaeroides 2.4.1]
 gi|126103520|gb|ABN76198.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221159619|gb|ACM00599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides KD131]
 gi|332275570|gb|EGJ20885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides WS8N]
          Length = 112

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W+++N +YA  WP I TKK+ LP A  +DG   K   +FS  PG
Sbjct: 61  PDMESWVELNRKYAEVWPVIVTKKDPLPEATDLDGQPGKLATHFSEKPG 109


>gi|83952972|ref|ZP_00961699.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83835634|gb|EAP74936.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 112

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K  KYFS   G
Sbjct: 61  PDMEEWVEFNRKYSEMWPVIITKKDQLPEAEERDGEEGKLAKYFSEKAG 109


>gi|254466025|ref|ZP_05079436.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodobacterales bacterium
           Y4I]
 gi|206686933|gb|EDZ47415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodobacterales bacterium
           Y4I]
          Length = 112

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +YA  WP I +KK+ LP   + DG + K EKYFS  PG
Sbjct: 61  PDMDKWVEFNRKYAELWPVIVSKKDPLPGYEERDGEEGKMEKYFSEAPG 109


>gi|83955683|ref|ZP_00964263.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83839977|gb|EAP79153.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 112

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A K DG + K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEKRDGEEGKLEKYFSEAPG 109


>gi|149202303|ref|ZP_01879276.1| iron-sulfur cluster-binding protein [Roseovarius sp. TM1035]
 gi|149144401|gb|EDM32432.1| iron-sulfur cluster-binding protein [Roseovarius sp. TM1035]
          Length = 112

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 85/109 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +YA  WP I TKK+ LP A + DG   K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYAEMWPVIITKKDPLPEAEERDGEAGKLEKYFSEAPG 109


>gi|294012720|ref|YP_003546180.1| ferredoxin [Sphingobium japonicum UT26S]
 gi|292676050|dbj|BAI97568.1| ferredoxin [Sphingobium japonicum UT26S]
          Length = 112

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 90/110 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            GLE WL++N++++ +WPNIT K E+   A  M G++ K+E++FSP PG 
Sbjct: 61  NGLEKWLELNTKFSAEWPNITVKGEAPADADDMKGIENKFEQFFSPEPGA 110


>gi|84500894|ref|ZP_00999129.1| iron-sulfur cluster-binding protein [Oceanicola batsensis HTCC2597]
 gi|84390961|gb|EAQ03379.1| iron-sulfur cluster-binding protein [Oceanicola batsensis HTCC2597]
          Length = 112

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 85/109 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P  E W++ N +Y+  WP I T+K+ LP A + DG   K EKYFS  PG
Sbjct: 61  PDTEKWVEFNRKYSEMWPVIITRKDPLPEAEERDGETGKLEKYFSEKPG 109


>gi|260576850|ref|ZP_05844833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020887|gb|EEW24200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 112

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 83/109 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVIDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +YA  WP I TKK+ LP A   DG   K   YFS  PG
Sbjct: 61  PDMDTWVEFNRKYAEMWPVIVTKKDMLPDAEARDGETNKLATYFSEKPG 109


>gi|254486267|ref|ZP_05099472.1| ferredoxin II [Roseobacter sp. GAI101]
 gi|214043136|gb|EEB83774.1| ferredoxin II [Roseobacter sp. GAI101]
          Length = 112

 Score =  160 bits (406), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEERDGEEGKLEKYFSEAPG 109


>gi|307294531|ref|ZP_07574373.1| ferredoxin [Sphingobium chlorophenolicum L-1]
 gi|306879005|gb|EFN10223.1| ferredoxin [Sphingobium chlorophenolicum L-1]
          Length = 112

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 90/110 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            GLE WL++N++++ +WPNIT K ++   A  M GV+ K+E++FSP PG 
Sbjct: 61  NGLEKWLELNTKFSAEWPNITVKGDAPADADDMKGVENKFEQFFSPEPGA 110


>gi|103488218|ref|YP_617779.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sphingopyxis alaskensis
           RB2256]
 gi|98978295|gb|ABF54446.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sphingopyxis alaskensis
           RB2256]
          Length = 112

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 90/109 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACVRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL++NS+++ +WPNIT KKE+   A +  GV+ K+EK+FSP PG
Sbjct: 61  SGLEKWLEVNSKFSAEWPNITVKKETPADADEYKGVEGKFEKFFSPEPG 109


>gi|99080416|ref|YP_612570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036696|gb|ABF63308.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 112

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +YA  WP I +KK+ +P   + DG + K EKYFS  PG
Sbjct: 61  PDMDQWVEFNRKYAELWPVIVSKKDPMPGHEERDGEEGKLEKYFSEAPG 109


>gi|85707560|ref|ZP_01038630.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85667917|gb|EAQ22808.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 112

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 85/109 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +YA  WP I TKK+ LP A + DG   K +KYFS  PG
Sbjct: 61  PDMEKWVEFNRKYAEMWPVIITKKDPLPEAEERDGEAGKLDKYFSEAPG 109


>gi|259417758|ref|ZP_05741677.1| ferredoxin-1 [Silicibacter sp. TrichCH4B]
 gi|259346664|gb|EEW58478.1| ferredoxin-1 [Silicibacter sp. TrichCH4B]
          Length = 112

 Score =  160 bits (404), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +YA  WP I +KK+ +P   + DG + K EKYFS  PG
Sbjct: 61  PDMDQWVEFNRKYAELWPVIVSKKDPMPGYEERDGEEGKLEKYFSEAPG 109


>gi|126738719|ref|ZP_01754415.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719900|gb|EBA16607.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 112

 Score =  160 bits (404), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +Y+  WP I +KK+ +P   + DG + K EKYFS  PG
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPMPGYEEKDGEEGKLEKYFSEAPG 109


>gi|323138997|ref|ZP_08074057.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylocystis sp. ATCC 49242]
 gi|322395751|gb|EFX98292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylocystis sp. ATCC 49242]
          Length = 112

 Score =  160 bits (404), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 85/109 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
             LE WLK+N++ A  WPNIT K+E    A + DG   K+E +FS  PG
Sbjct: 61  ENLEQWLKLNADMAQNWPNITIKREPPADAKEWDGKPGKFEAHFSAEPG 109


>gi|83941124|ref|ZP_00953586.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83846944|gb|EAP84819.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 112

 Score =  160 bits (404), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEERDGEEGKLEKYFSEAPG 109


>gi|260426157|ref|ZP_05780136.1| ferredoxin [Citreicella sp. SE45]
 gi|260420649|gb|EEX13900.1| ferredoxin [Citreicella sp. SE45]
          Length = 112

 Score =  159 bits (403), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 85/109 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +YA  WP I +KKE +P     DG   K +KYFS  PG
Sbjct: 61  PDMDKWVEFNRKYAEMWPVIISKKEPMPGYEDRDGEPGKLDKYFSEAPG 109


>gi|94497219|ref|ZP_01303791.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sphingomonas sp.
           SKA58]
 gi|94423324|gb|EAT08353.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sphingomonas sp.
           SKA58]
          Length = 112

 Score =  159 bits (403), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL++N++Y+ +WPNIT K ++   A  M+GV+ K E++FSP PG
Sbjct: 61  NGLEKWLELNTKYSAEWPNITVKGDAPADAEAMNGVENKLEQFFSPEPG 109


>gi|84687444|ref|ZP_01015322.1| iron-sulfur cluster-binding protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664602|gb|EAQ11088.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 110

 Score =  159 bits (401), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 85/110 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDKCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P  E W++ N +Y+  WP I  KK+ LP A + DG + K EKYFS  PGG
Sbjct: 61  PEAEKWVEFNRKYSELWPVIIEKKDPLPEAEERDGEEGKLEKYFSEAPGG 110


>gi|148556440|ref|YP_001264022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingomonas wittichii RW1]
 gi|148501630|gb|ABQ69884.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sphingomonas
           wittichii RW1]
          Length = 112

 Score =  157 bits (397), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL++N+ +A QWPNIT K+E+   A +   V+ KYEK+FSP PG
Sbjct: 61  SGLEQWLELNNTFAAQWPNITRKREAPADADEWKNVEGKYEKHFSPEPG 109


>gi|254454463|ref|ZP_05067900.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
 gi|198268869|gb|EDY93139.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
          Length = 111

 Score =  156 bits (395), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS  PG
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQLPNAEEMDGKEDKME-LFSEAPG 108


>gi|304321708|ref|YP_003855351.1| hypothetical protein PB2503_10789 [Parvularcula bermudensis
           HTCC2503]
 gi|303300610|gb|ADM10209.1| hypothetical protein PB2503_10789 [Parvularcula bermudensis
           HTCC2503]
          Length = 112

 Score =  156 bits (395), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGENFLAI PDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYVVTDACIACKYTDCVEVCPVDCFYEGENFLAIKPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                W ++N++YA QWPNIT  K +LP A  M  V+ K E +FS  PG
Sbjct: 61  DPDGKWTELNAKYAEQWPNITKAKPALPEADAMADVENKLETHFSEKPG 109


>gi|126727501|ref|ZP_01743335.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
 gi|126703281|gb|EBA02380.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
          Length = 112

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 88/109 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P ++ W++ N +Y+  WP I T+K+   +AA+M+GV+ K E +FS  PG
Sbjct: 61  PDMDKWVEFNRKYSELWPVIITRKDPPANAAEMEGVEGKLESHFSEKPG 109


>gi|163797038|ref|ZP_02190994.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159177785|gb|EDP62336.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 112

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 84/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VTE CI CK+TDCVEVCPVDCFYEG N L IHPDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYIVTEACIKCKYTDCVEVCPVDCFYEGANMLVIHPDECIDCGVCEPECPPEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              E WL++N EY+  WPNIT K +++P A  M   K K+E++F   PG  N
Sbjct: 61  TEAEKWLEMNREYSEAWPNITRKIDAMPEADAMQAEKGKFERFFDSGPGQGN 112


>gi|154246582|ref|YP_001417540.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xanthobacter autotrophicus Py2]
 gi|154160667|gb|ABS67883.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 111

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 84/109 (77%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD E
Sbjct: 1   MTYVVTENCIRCKYMDCVSVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL +N+EYA  WPNIT K++    A + DG K   E+ FSP PG
Sbjct: 61  LGLEKWLALNAEYAKAWPNITLKRDPPADAKEWDG-KPGKEELFSPEPG 108


>gi|296447998|ref|ZP_06889904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylosinus
           trichosporium OB3b]
 gi|296254508|gb|EFH01629.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylosinus
           trichosporium OB3b]
          Length = 112

 Score =  155 bits (393), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 83/109 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEG N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MPYVVTENCIKCKYMDCVEVCPVDCFYEGVNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P LE W+ +N+EYA  WPN+T K++    A + DG   K E  FSP PG
Sbjct: 61  PDLEKWMALNAEYAQVWPNVTIKRDPPADAKEWDGKPGKLESGFSPEPG 109


>gi|254441817|ref|ZP_05055310.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
 gi|198251895|gb|EDY76210.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
          Length = 133

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 23  MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 82

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K +  FS  PG
Sbjct: 83  PDMEKWVEFNLKYSEMWPVIITKKDQLPTAEEMDGKEGKLD-LFSEAPG 130


>gi|288957084|ref|YP_003447425.1| ferredoxin [Azospirillum sp. B510]
 gi|288909392|dbj|BAI70881.1| ferredoxin [Azospirillum sp. B510]
          Length = 110

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 84/110 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+ CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MPYVVTDGCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                WL++N +Y+ QWPNIT KK++   A    GV  K+EK+FSP  GG
Sbjct: 61  DRATKWLELNRDYSGQWPNITRKKDAPADADTFKGVDGKFEKFFSPKAGG 110


>gi|85375452|ref|YP_459514.1| ferredoxin II [Erythrobacter litoralis HTCC2594]
 gi|84788535|gb|ABC64717.1| ferredoxin II [Erythrobacter litoralis HTCC2594]
          Length = 112

 Score =  155 bits (391), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL+IN++++  WPNIT KKE    A +  G + KYEKYFS  PG
Sbjct: 61  DGLEKWLEINTKFSADWPNITQKKEPPADADEHKGEEDKYEKYFSAEPG 109


>gi|85709784|ref|ZP_01040849.1| ferredoxin II [Erythrobacter sp. NAP1]
 gi|85688494|gb|EAQ28498.1| ferredoxin II [Erythrobacter sp. NAP1]
          Length = 112

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 89/109 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTEDCIKCKYTDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL++N++++ +WPNIT++K+    A +  G + K+EKYFS  PG
Sbjct: 61  DGLEKWLELNTKFSAEWPNITSQKDPPADADEHKGEENKFEKYFSAEPG 109


>gi|163746985|ref|ZP_02154342.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380099|gb|EDQ04511.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 111

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 86/109 (78%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS  PG
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPAAEEMDGKEGKME-LFSEKPG 108


>gi|84515405|ref|ZP_01002767.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84510688|gb|EAQ07143.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 111

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP I TKK+ LP A +MDG   K +  FS  PG
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPGAEEMDGKPGKLD-LFSEAPG 108


>gi|310815307|ref|YP_003963271.1| iron-sulfur cluster-binding protein [Ketogulonicigenium vulgare
           Y25]
 gi|308754042|gb|ADO41971.1| iron-sulfur cluster-binding protein [Ketogulonicigenium vulgare
           Y25]
          Length = 111

 Score =  154 bits (389), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P +E W++ N +Y+  WP IT++++ LP   +MDG   K     S NPG
Sbjct: 61  PDMEKWVEFNRKYSEMWPVITSRRDPLPGYEEMDGKPGKL-ALLSENPG 108


>gi|126733166|ref|ZP_01748913.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126716032|gb|EBA12896.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 111

 Score =  154 bits (389), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 83/103 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P +E W++ N +Y+  WP I TKK+ LP+A  MDG + K E +
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPTADDMDGKEGKMELF 103


>gi|87198149|ref|YP_495406.1| 4Fe-4S ferredoxin, iron-sulfur binding [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133830|gb|ABD24572.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 112

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL++N++Y+ +WPNIT KK++   A +  G + K++KYFS  PG
Sbjct: 61  SGLEQWLELNAKYSAEWPNITAKKDAPADADEHKGEEGKFDKYFSAEPG 109


>gi|89069369|ref|ZP_01156728.1| iron-sulfur cluster-binding protein [Oceanicola granulosus
           HTCC2516]
 gi|89045136|gb|EAR51207.1| iron-sulfur cluster-binding protein [Oceanicola granulosus
           HTCC2516]
          Length = 111

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 82/103 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P +E W++ N +YA  WP I TKK+ LP A +MDG   K E +
Sbjct: 61  PDVEKWVEFNRKYAEIWPVIITKKDPLPKAEEMDGKSGKLELF 103


>gi|209965507|ref|YP_002298422.1| ferredoxin II [Rhodospirillum centenum SW]
 gi|209958973|gb|ACI99609.1| ferredoxin II [Rhodospirillum centenum SW]
          Length = 111

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 83/109 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MPYVVTELCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P  E WL++N EY+T WPN+  KK +   A +  G+  KY K+FSP PG
Sbjct: 61  PKAEPWLELNREYSTNWPNLNRKKPAPADADEYKGMPDKYAKFFSPKPG 109


>gi|326386141|ref|ZP_08207765.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209366|gb|EGD60159.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 112

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 86/109 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTEACIKCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE WL++N++Y+ +WPN+T KK++   A +  G + K++KYFS  PG
Sbjct: 61  SGLEQWLELNAKYSAEWPNLTAKKDAPADADEHKGEEGKFDKYFSAEPG 109


>gi|255263563|ref|ZP_05342905.1| ferredoxin-1 [Thalassiobium sp. R2A62]
 gi|255105898|gb|EET48572.1| ferredoxin-1 [Thalassiobium sp. R2A62]
          Length = 111

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 84/103 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E +
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPNADEMDGKEGKMELF 103


>gi|56551116|ref|YP_161955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761474|ref|ZP_04759562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|56542690|gb|AAV88844.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241374381|gb|EER63878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 112

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W+++N +YA +WPNIT K +    A +M  V  K EK+FSP PG  +
Sbjct: 61  NGLESWMELNRKYAEEWPNITHKTDVPADADEMREVTGKLEKFFSPKPGNGD 112


>gi|260753231|ref|YP_003226124.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258552594|gb|ACV75540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 112

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W+++N +YA +WPNIT K +    A +M  V  K EK+FSP PG  +
Sbjct: 61  NGLESWMELNRKYAEEWPNITHKTDVPGDADEMREVTGKLEKFFSPKPGNGD 112


>gi|253795562|ref|YP_003038658.1| putative Ferredoxin II [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739870|gb|ACT34205.1| putative Ferredoxin II [Candidatus Hodgkinia cicadicola Dsem]
          Length = 160

 Score =  151 bits (381), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEG+NFL I+PDECIDCGVCEPECP  AIK   E
Sbjct: 50  MAYVVTDNCICCKYTDCVEVCPVDCFYEGKNFLVINPDECIDCGVCEPECPAGAIKSARE 109

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PG+E W ++N+  A  WPNI+ +K  +P A + +GV  K EKYF
Sbjct: 110 PGVEKWAELNARCAKLWPNISRRKPPMPKADEFNGVANKLEKYF 153


>gi|296284816|ref|ZP_06862814.1| ferredoxin II [Citromicrobium bathyomarinum JL354]
          Length = 112

 Score =  150 bits (379), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
             LE WL++N++++ +WPNIT KK+    A +  G + K+EK+F+P PG
Sbjct: 61  DNLEKWLELNTKFSNEWPNITQKKDPPEDADEHKGEEGKFEKFFNPEPG 109


>gi|83859719|ref|ZP_00953239.1| ferredoxin A [Oceanicaulis alexandrii HTCC2633]
 gi|83852078|gb|EAP89932.1| ferredoxin A [Oceanicaulis alexandrii HTCC2633]
          Length = 111

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP++AIKPDTE
Sbjct: 1   MTYIVTDACIRCKFTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPIEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
              +  WL +NS+YAT+WPNIT +K+      + + +  K EKYFS  P  
Sbjct: 61  DDADGKWLALNSKYATEWPNITVRKDPPADYKEFETITNKLEKYFSEKPAS 111


>gi|182680040|ref|YP_001834186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635923|gb|ACB96697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 112

 Score =  150 bits (378), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 82/109 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M+YVV ENCI CK+ DCVEVCPVDCFYEGE  L I+PDECIDCGVCEPECP +AIKPDT 
Sbjct: 1   MSYVVLENCIKCKYMDCVEVCPVDCFYEGETMLVINPDECIDCGVCEPECPAEAIKPDTV 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            GLE W  +N + A  WPN+T K+E+ P A + DG   K++ +F+  PG
Sbjct: 61  SGLEKWQALNRKMAQYWPNVTVKREAPPEAKQFDGRPGKFDAFFTETPG 109


>gi|89055800|ref|YP_511251.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88865349|gb|ABD56226.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 111

 Score =  150 bits (378), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 81/103 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P ++ W++ N +Y+  WP I TKK+ LP+A  MDG   K E +
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIITKKDPLPTADDMDGKPGKMELF 103


>gi|218532108|ref|YP_002422924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218524411|gb|ACK84996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 112

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 81/105 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFY G+  L I+PDECIDCGVCEPECP DAIK DTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYVGDTMLVINPDECIDCGVCEPECPADAIKADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           PGL+ W+ +N++YA  WPNI+ K++ L  AA  DG   K E  F 
Sbjct: 61  PGLDGWIALNAKYAALWPNISEKRDPLHDAAAWDGRPGKLESVFG 105


>gi|149185281|ref|ZP_01863598.1| ferredoxin II [Erythrobacter sp. SD-21]
 gi|148831392|gb|EDL49826.1| ferredoxin II [Erythrobacter sp. SD-21]
          Length = 112

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 87/109 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
             LE WL++N++++ +WPNIT++KE    A +  G + K++K+FS  PG
Sbjct: 61  DNLEKWLELNTKFSAEWPNITSQKEPPADADEHKGEEGKFDKFFSAEPG 109


>gi|114570845|ref|YP_757525.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Maricaulis maris MCS10]
 gi|114341307|gb|ABI66587.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Maricaulis
           maris MCS10]
          Length = 113

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/113 (66%), Positives = 87/113 (76%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYIVTDACVRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +  WL INS++A  WPNIT +K++   A  M     KYEKYFS  PG  +
Sbjct: 61  DDKDGKWLAINSKFAETWPNITLRKDAPADADAMADETGKYEKYFSEKPGSGD 113


>gi|16124907|ref|NP_419471.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|221233628|ref|YP_002516064.1| ferredoxin [Caulobacter crescentus NA1000]
 gi|10719994|sp|Q45972|FER1_CAUCR RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|497275|gb|AAA85787.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|13421869|gb|AAK22639.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|220962800|gb|ACL94156.1| ferredoxin [Caulobacter crescentus NA1000]
          Length = 113

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDACVRCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WLKIN++YA  WPNIT K E        +    K+EKYFS  PG
Sbjct: 61  DEADGKWLKINADYAKVWPNITVKGEPPADREDFERETGKFEKYFSEKPG 110


>gi|302384120|ref|YP_003819943.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194748|gb|ADL02320.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 133

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DC+EVCPVDCFYEGENFLAI PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 21  MTYIVTDACVKCKFMDCIEVCPVDCFYEGENFLAIAPDECIDCGVCEPECPVDAIKPDTE 80

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WL+IN++YA  WPNIT K        + +    K+EKYFSP PG
Sbjct: 81  DEPDGKWLQINAQYARVWPNITVKGTPPADREQYERETGKFEKYFSPEPG 130


>gi|167648072|ref|YP_001685735.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Caulobacter sp. K31]
 gi|167350502|gb|ABZ73237.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
           sp. K31]
          Length = 113

 Score =  147 bits (370), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK  DCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP+DAIKPDTE
Sbjct: 1   MTYIVTDACIKCKFMDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPIDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WL+INSEYA  WPNIT K          +    K+EKYFS  PG
Sbjct: 61  DEPDGKWLRINSEYAKIWPNITVKGVPPADREAFERETGKFEKYFSEKPG 110


>gi|30580420|sp|Q44037|FER1_AFIFE RecName: Full=Ferredoxin-1
 gi|550302|emb|CAA57420.1| ferredoxin [Afipia felis]
          Length = 93

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 78/92 (84%), Gaps = 1/92 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
            LE WL +N+EYA  WPNIT KK++ P+ AK
Sbjct: 61 QNLEKWLGVNAEYAKTWPNITQKKDA-PADAK 91


>gi|294084640|ref|YP_003551398.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664213|gb|ADE39314.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 112

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/112 (60%), Positives = 82/112 (73%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PD+E
Sbjct: 1   MTYIVNENCINCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPPEAILPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P    WL +N + +  WPNI  K + +P+A   +    K++KYF+  PG  N
Sbjct: 61  PEATKWLDLNRDMSEIWPNIGQKIDEMPNAKAAESETGKFDKYFTKAPGKGN 112


>gi|197104174|ref|YP_002129551.1| ferredoxin A [Phenylobacterium zucineum HLK1]
 gi|196477594|gb|ACG77122.1| ferredoxin A [Phenylobacterium zucineum HLK1]
          Length = 113

 Score =  146 bits (368), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVMDPCIKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WLK+NSEY+  WPNIT K      A + +    K+EKYFS  PG
Sbjct: 61  DDPDGKWLKVNSEYSRVWPNITVKGTPPADAEQFERESGKFEKYFSEKPG 110


>gi|114799500|ref|YP_762091.1| ferredoxin [Hyphomonas neptunium ATCC 15444]
 gi|114739674|gb|ABI77799.1| ferredoxin [Hyphomonas neptunium ATCC 15444]
          Length = 113

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 82/113 (72%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYIVVDACIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +  WLK+NS+YA  WPNIT  KE      +      K EKYF+ NPG  +
Sbjct: 61  DDPDGKWLKLNSDYAKVWPNITRMKEPPADREEFAQETGKLEKYFTANPGAGD 113


>gi|238027280|ref|YP_002911511.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia glumae BGR1]
 gi|237876474|gb|ACR28807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           glumae BGR1]
          Length = 111

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 82/103 (79%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CKHTDCV+VCPVDCF+EGENFLAI PDECIDCGVCEPECPVDAI+ D+ 
Sbjct: 1   MTYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             P   ++L +N E A  WP+IT+K+ +LP AA+   V+ K E
Sbjct: 61  LAPEQRIFLDLNRELAQNWPSITSKRAALPDAARWKDVEGKLE 103


>gi|329848407|ref|ZP_08263435.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
 gi|328843470|gb|EGF93039.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
          Length = 112

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 81/109 (74%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDPCVKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                WL+IN++YA  WPNI+ K        + +    KYEKYFS  PG
Sbjct: 61  DEGTKWLEINTKYAAVWPNISEKGTPPADREEYERETGKYEKYFSEKPG 109


>gi|299134345|ref|ZP_07027538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298591092|gb|EFI51294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 113

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PD++
Sbjct: 1   MTHVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFPDSD 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P  E  WL+ N +YA+ WPNI  KK     A K +GVK K+E YFS  PG
Sbjct: 61  PAAEPKWLEQNKKYASLWPNIPFKKTPPEDADKWNGVKDKFEPYFSEKPG 110


>gi|254419877|ref|ZP_05033601.1| 4Fe-4S binding domain protein [Brevundimonas sp. BAL3]
 gi|196186054|gb|EDX81030.1| 4Fe-4S binding domain protein [Brevundimonas sp. BAL3]
          Length = 113

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I PDECIDCGVCEPECPVDAI PDTE
Sbjct: 1   MTYIVTDACVKCKFMDCVEVCPVDCFYEGENFLVIAPDECIDCGVCEPECPVDAIVPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WL++N+EYA  WPNIT K        + +    KYEKYFSP PG
Sbjct: 61  DEPDGKWLQVNAEYAKVWPNITVKGTPPADREQYERETGKYEKYFSPKPG 110


>gi|170745425|ref|YP_001766882.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659026|gb|ACB28080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 112

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 75/105 (71%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFY GE  L I PDECIDCGVCEPECP DAIK DTE
Sbjct: 1   MTYVVTENCIRCKYTDCVEVCPVDCFYVGETMLVIDPDECIDCGVCEPECPADAIKADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           PGLE W   N++YA  WPNI  K +    AA+ DG   K    F 
Sbjct: 61  PGLEGWKAFNAKYAALWPNIAEKVDPAADAAEWDGRDGKLIAVFG 105


>gi|126726969|ref|ZP_01742807.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
 gi|126703641|gb|EBA02736.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
          Length = 111

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 81/111 (72%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVSVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            G E WLK+N+E A QWP I  + +    A +  G + K+ +  S  P  +
Sbjct: 61  SGHETWLKLNAELAEQWPVIDEQIDPPADADQWLGKQNKWTE-LSREPAAR 110


>gi|295691060|ref|YP_003594753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caulobacter segnis ATCC 21756]
 gi|295432963|gb|ADG12135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
           segnis ATCC 21756]
          Length = 113

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDACVRCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WL++N++YA  WPNIT K        + +    K+EKYFS  PG
Sbjct: 61  DEPDGKWLRVNADYAKVWPNITVKGVPPEDREQFERETGKFEKYFSEKPG 110


>gi|329890830|ref|ZP_08269173.1| ferredoxin-2 [Brevundimonas diminuta ATCC 11568]
 gi|328846131|gb|EGF95695.1| ferredoxin-2 [Brevundimonas diminuta ATCC 11568]
          Length = 113

 Score =  143 bits (360), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I PDECIDCGVCEPECPVDAI PDTE
Sbjct: 1   MTYIVTDACVKCKFMDCVEVCPVDCFYEGENFLVIAPDECIDCGVCEPECPVDAIVPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WL++N+EYA  WPNIT K        + +    K+EKYFSP PG
Sbjct: 61  DEPDGKWLQVNAEYAKVWPNITVKGVPPADREQYERETGKFEKYFSPKPG 110


>gi|209886244|ref|YP_002290101.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
 gi|209874440|gb|ACI94236.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
          Length = 113

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENC+ CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PD++
Sbjct: 1   MTHVVTENCVKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFPDSD 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P  E  WL+ N +Y+  WPNI  KK     A K +GV  KY++YFS  PG
Sbjct: 61  PAAEPQWLEQNRKYSAIWPNIPFKKVPPEDADKWNGVPNKYDQYFSEKPG 110


>gi|83313418|ref|YP_423682.1| ferredoxin II [Magnetospirillum magneticum AMB-1]
 gi|82948259|dbj|BAE53123.1| Ferredoxin II [Magnetospirillum magneticum AMB-1]
          Length = 123

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 77/109 (70%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 15  MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSD 74

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W   N +YA  WPNIT K ++   A    G   K  K  SPNPG
Sbjct: 75  PKATAWTDTNRQYAGSWPNITRKGDAPADADDWKGKPDK-AKLLSPNPG 122


>gi|118592843|ref|ZP_01550232.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Stappia aggregata IAM 12614]
 gi|118434613|gb|EAV41265.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Stappia aggregata IAM 12614]
          Length = 108

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 81/102 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI  DT+
Sbjct: 1   MTFVVTENCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILADTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
           P  + W+ +N++YA  WP IT K +++P A   +GV+ K E+
Sbjct: 61  PEAQKWIDLNAKYAALWPVITEKIDAMPDAEDWNGVEGKLEQ 102


>gi|40062704|gb|AAR37617.1| ferredoxin [uncultured marine bacterium 314]
          Length = 113

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/111 (64%), Positives = 83/111 (74%), Gaps = 3/111 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK  DCV+VCPVDCFYEGEN LAI PDECIDCGVCEPECP+DAIKPDT+
Sbjct: 1   MTYIVNDNCIKCKLMDCVDVCPVDCFYEGENMLAIKPDECIDCGVCEPECPIDAIKPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKK-ESLP-SAAKMDGVKQKYEKYFSPNPG 109
            G   W++ N++Y   WPNIT K+ E +P    K  GVK K  KYFS  PG
Sbjct: 61  EGASDWVEHNTKYGDLWPNITKKRSEDVPHDQEKWRGVKDKL-KYFSEKPG 110


>gi|315498121|ref|YP_004086925.1| ferredoxin a [Asticcacaulis excentricus CB 48]
 gi|315416133|gb|ADU12774.1| ferredoxin A [Asticcacaulis excentricus CB 48]
          Length = 113

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 86/112 (76%), Gaps = 5/112 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDPCVKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ--KYEKYFSPNPG 109
              +  WL++NS+YA  WPNI+ K    P A + D  ++  K+EKYFS  PG
Sbjct: 61  DEPDGKWLEVNSKYARVWPNISVK--GTPPADREDFERETGKFEKYFSEKPG 110


>gi|262277940|ref|ZP_06055733.1| ferredoxin-1 (Ferredoxin I) (FdI) [alpha proteobacterium HIMB114]
 gi|262225043|gb|EEY75502.1| ferredoxin-1 (Ferredoxin I) (FdI) [alpha proteobacterium HIMB114]
          Length = 107

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 78/105 (74%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V E CI CK TDCV+VCPVDCFYEGEN L I+PDECIDCGVCEPECP+DAI+PDT 
Sbjct: 1   MTYIVNEKCIKCKLTDCVDVCPVDCFYEGENMLVINPDECIDCGVCEPECPIDAIEPDTN 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
             +E  L +N EY+ +WPNI+ KKE L    K    K K+ KYF 
Sbjct: 61  ANVEEMLLVNKEYSLKWPNISKKKEPLNDWEKYKDEKDKFNKYFE 105


>gi|332717239|ref|YP_004444705.1| Ferredoxin [Agrobacterium sp. H13-3]
 gi|325063924|gb|ADY67614.1| Ferredoxin [Agrobacterium sp. H13-3]
          Length = 111

 Score =  140 bits (354), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M+YVVTENCI CK+ DCVEVCPV+CFY GEN L IHPD+CIDCG+CE ECP  AI+PDTE
Sbjct: 1   MSYVVTENCIACKYMDCVEVCPVECFYAGENMLVIHPDQCIDCGICERECPAAAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL +WL +N  Y+  WP +  K+     A  M+G   K+   FS NPG  +
Sbjct: 61  AGLHVWLDLNRHYSGIWPRVHQKRTPPDDADIMNGAAAKF-SIFSKNPGAGD 111


>gi|23014750|ref|ZP_00054551.1| COG1146: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 109

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W   N +Y+++WPNIT K ++   A    G   K  K  SP PG
Sbjct: 61  PAAAAWTDTNRQYSSEWPNITRKGDAPADADDWKGKPDK-AKLLSPKPG 108


>gi|144899570|emb|CAM76434.1| 4Fe-4S ferredoxin, iron-sulfur binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 141

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 81/111 (72%), Gaps = 5/111 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 30  MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIVPDSD 89

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK--YFSPNPG 109
                W ++N +Y+ QWPNIT K +   + A  D  K K +K    SPNPG
Sbjct: 90  DKAAAWAQLNRDYSGQWPNITRKGD---APADADAWKNKPDKADLLSPNPG 137


>gi|71083130|ref|YP_265849.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762443|ref|ZP_01264408.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062243|gb|AAZ21246.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718245|gb|EAS84895.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1002]
          Length = 108

 Score =  140 bits (352), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/107 (63%), Positives = 79/107 (73%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK  DCVEVCPVDCFYEG+N L I P+ECIDCGVCEPECPVDAI  DTE
Sbjct: 1   MTYVVNDKCIKCKLMDCVEVCPVDCFYEGKNMLVIKPEECIDCGVCEPECPVDAIVADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
            G E WL++N++Y+  WPNIT KK+      K    + KY+KYFS N
Sbjct: 61  SGSEKWLELNTKYSEIWPNITIKKDPPEDNEKYKNEENKYDKYFSEN 107


>gi|300021613|ref|YP_003754224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523434|gb|ADJ21903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 114

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 80/114 (70%), Gaps = 2/114 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI  D E
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFSDAE 60

Query: 61  P-GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           P     WL +N ++A QWPNI  KK ++P A   +G   K  + FSP    ++ 
Sbjct: 61  PQATAHWLDLNRKHADQWPNIVAKKAAMPDADAENGRAGKAAE-FSPEAATEDA 113


>gi|159186232|ref|NP_356078.2| ferredoxin [Agrobacterium tumefaciens str. C58]
 gi|159141366|gb|AAK88863.2| ferredoxin [Agrobacterium tumefaciens str. C58]
          Length = 111

 Score =  139 bits (350), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPV+CFYEGEN L IHPD+CIDCG+CE ECP  AI+PDTE
Sbjct: 1   MPYVVTENCIACKYMDCVEVCPVECFYEGENMLVIHPDQCIDCGICERECPAAAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            GL +WL +N  Y+  WP +  K+    +A  M+G   K+    S NPG 
Sbjct: 61  AGLHVWLDLNRHYSGIWPRVHQKRTPPDNADTMNGAAAKF-SILSKNPGA 109


>gi|58040345|ref|YP_192309.1| ferredoxin [Gluconobacter oxydans 621H]
 gi|58002759|gb|AAW61653.1| Ferredoxin [Gluconobacter oxydans 621H]
          Length = 110

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 76/90 (84%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK TDCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1  MTYVVTENCIRCKFTDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSA 90
               W++IN++Y+TQWPN+T K +++P A
Sbjct: 61 NRAAPWIEINAKYSTQWPNMTRKIDAMPDA 90


>gi|229365481|dbj|BAH57989.1| hypothetical protein [Acetobacter lovaniensis]
          Length = 112

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 3   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 62

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNI T+K + P+ A+    K    +  SPNP
Sbjct: 63  DRAAAWAEINAKYATQWPNI-TRKGTPPADAEEWKDKPNKTELLSPNP 109


>gi|258541199|ref|YP_003186632.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01]
 gi|256632277|dbj|BAH98252.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01]
 gi|256635334|dbj|BAI01303.1| ferredoxin [Acetobacter pasteurianus IFO 3283-03]
 gi|256638389|dbj|BAI04351.1| ferredoxin [Acetobacter pasteurianus IFO 3283-07]
 gi|256641443|dbj|BAI07398.1| ferredoxin [Acetobacter pasteurianus IFO 3283-22]
 gi|256644498|dbj|BAI10446.1| ferredoxin [Acetobacter pasteurianus IFO 3283-26]
 gi|256647553|dbj|BAI13494.1| ferredoxin [Acetobacter pasteurianus IFO 3283-32]
 gi|256650606|dbj|BAI16540.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653597|dbj|BAI19524.1| ferredoxin [Acetobacter pasteurianus IFO 3283-12]
          Length = 110

 Score =  138 bits (348), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNI T+K + P+ A+    K    +  SPNP
Sbjct: 61  DRAAAWAEINAKYATQWPNI-TRKGTPPADAEEWKDKPNKTELLSPNP 107


>gi|254293139|ref|YP_003059162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hirschia
           baltica ATCC 49814]
 gi|254041670|gb|ACT58465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hirschia
           baltica ATCC 49814]
          Length = 113

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L I P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYIVIDACIKCKYTDCVEVCPVDCFYEGENMLVIDPEECIDCGVCEPECPAEAIVPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +  WLK+N+EYA +WPNIT +K+    A +   VK K   +FS  PG
Sbjct: 61  DDKDGKWLKLNTEYAAKWPNITVRKDPPEDADEWSQVKDKLGPHFSEKPG 110


>gi|329114808|ref|ZP_08243565.1| Ferredoxin-2 [Acetobacter pomorum DM001]
 gi|326695939|gb|EGE47623.1| Ferredoxin-2 [Acetobacter pomorum DM001]
          Length = 112

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 3   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 62

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNI T+K + P+ A+    K    +  SP+P
Sbjct: 63  DRAAAWAEINAKYATQWPNI-TRKGTPPADAEEWKDKPNKTELLSPDP 109


>gi|332186983|ref|ZP_08388724.1| 4Fe-4S binding domain protein [Sphingomonas sp. S17]
 gi|332012993|gb|EGI55057.1| 4Fe-4S binding domain protein [Sphingomonas sp. S17]
          Length = 99

 Score =  137 bits (344), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 76/95 (80%), Gaps = 1/95 (1%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
           DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE GLE WL++N+ ++ 
Sbjct: 2   DCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTESGLEQWLELNTTFSA 61

Query: 76  QWPNITTK-KESLPSAAKMDGVKQKYEKYFSPNPG 109
           QWPN+T K  ++ P A  M GV+ KYE++FSP PG
Sbjct: 62  QWPNVTRKLDQTPPDADAMKGVENKYEQFFSPEPG 96


>gi|71064823|ref|YP_263550.1| ferredoxin [Psychrobacter arcticus 273-4]
 gi|71037808|gb|AAZ18116.1| ferredoxin, 4Fe-Fs binding domain [Psychrobacter arcticus 273-4]
          Length = 107

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCILCK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCILCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++ ++N E A +WPNIT  KE +P AAK DGV+ K +
Sbjct: 61  VPKGQEMFTQLNEELAQKWPNITEMKEQMPEAAKWDGVEGKIQ 103


>gi|52857656|gb|AAU89081.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 68/80 (85%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA  WP I
Sbjct: 61 QNLEKWLGVNAEYAKTWPTI 80


>gi|330967908|gb|EGH68168.1| ferredoxin [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 107

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 81/103 (78%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G+E ++++N+E A  WPNIT KK+S+P AA+ DG K K E
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDSMPDAAEWDGKKGKIE 103


>gi|83591417|ref|YP_425169.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574331|gb|ABC20882.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 80/111 (72%), Gaps = 5/111 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD+E
Sbjct: 1   MPYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK--YFSPNPG 109
                WL+IN ++A  WPNIT K    P+ A  D  K K +K    S NPG
Sbjct: 61  AIAGKWLEINRKFADLWPNITRKG---PALADADDWKDKPDKTGLLSENPG 108


>gi|296537277|ref|ZP_06899163.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296262395|gb|EFH09134.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 110

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 76/109 (69%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTENCIRCKYMDCVEVCPVDCFYVGENMLVIHPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                W ++N  Y+ QWPNIT K E+   A   +G   K +  F P PG
Sbjct: 61  DKAADWAELNRTYSQQWPNITRKGEAPEDAEAWNGKPDK-KALFDPKPG 108


>gi|94501247|ref|ZP_01307769.1| ferredoxin [Oceanobacter sp. RED65]
 gi|94426674|gb|EAT11660.1| ferredoxin [Oceanobacter sp. RED65]
          Length = 107

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E A +WPNIT  K+ LP A + DGV+ K E
Sbjct: 61  LPAGQEKFIELNAELAEEWPNITEMKDKLPDAEEWDGVEGKIE 103


>gi|154246030|ref|YP_001416988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xanthobacter autotrophicus Py2]
 gi|154160115|gb|ABS67331.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 120

 Score =  134 bits (337), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 76/109 (69%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK  DCV VCPVDCFYEGEN L I+PDECIDCGVCEPECP  AI  DT 
Sbjct: 1   MAYVVTDNCIRCKFMDCVAVCPVDCFYEGENMLVINPDECIDCGVCEPECPAAAIAADTA 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W+ +N++YA  WPNI  KKE    AA+   V  K+E  FSP PG
Sbjct: 61  PEAGPWIALNAQYAALWPNIAEKKEPPADAAQWMDVADKFESAFSPAPG 109


>gi|28871202|ref|NP_793821.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969150|ref|ZP_03397289.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|301383955|ref|ZP_07232373.1| ferredoxin [Pseudomonas syringae pv. tomato Max13]
 gi|302064159|ref|ZP_07255700.1| ferredoxin [Pseudomonas syringae pv. tomato K40]
 gi|302134755|ref|ZP_07260745.1| ferredoxin [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28854452|gb|AAO57516.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926148|gb|EEB59704.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|330872695|gb|EGH06844.1| ferredoxin [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331016400|gb|EGH96456.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 107

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G+E ++++N+E A  WPNIT KK+ +P AA  DG K K E
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDGMPDAADWDGKKGKIE 103


>gi|331006208|ref|ZP_08329530.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC1989]
 gi|330419965|gb|EGG94309.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC1989]
          Length = 107

 Score =  133 bits (335), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP DAI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPADAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E++L++N+E A  WPNIT  KE+   A + DGV+ K +  
Sbjct: 61  LPEGQEVFLELNAELAETWPNITEMKEAPADAEEWDGVEGKLQHL 105


>gi|52857664|gb|AAU89085.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 67/79 (84%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +++EYA  WP 
Sbjct: 61 QNLEKWLGVSAEYAKTWPK 79


>gi|52857660|gb|AAU89083.1| ferredoxin [uncultured Afipia sp.]
          Length = 81

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 67/79 (84%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +++EYA  WP 
Sbjct: 61 QNLEKWLGVSAEYAKTWPT 79


>gi|296112737|ref|YP_003626675.1| ferredoxin 1 [Moraxella catarrhalis RH4]
 gi|295920431|gb|ADG60782.1| ferredoxin 1 [Moraxella catarrhalis RH4]
 gi|326560986|gb|EGE11351.1| ferredoxin 1 [Moraxella catarrhalis 7169]
 gi|326563774|gb|EGE14025.1| ferredoxin 1 [Moraxella catarrhalis 46P47B1]
 gi|326563977|gb|EGE14227.1| ferredoxin 1 [Moraxella catarrhalis 12P80B1]
 gi|326566788|gb|EGE16927.1| ferredoxin 1 [Moraxella catarrhalis 103P14B1]
 gi|326567369|gb|EGE17484.1| ferredoxin 1 [Moraxella catarrhalis BC1]
 gi|326569888|gb|EGE19938.1| ferredoxin 1 [Moraxella catarrhalis BC8]
 gi|326571504|gb|EGE21519.1| ferredoxin 1 [Moraxella catarrhalis BC7]
 gi|326575213|gb|EGE25141.1| ferredoxin 1 [Moraxella catarrhalis CO72]
 gi|326576701|gb|EGE26608.1| ferredoxin 1 [Moraxella catarrhalis 101P30B1]
 gi|326577625|gb|EGE27502.1| ferredoxin 1 [Moraxella catarrhalis O35E]
          Length = 107

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +LKIN E +  WPNIT KK++LP   K DGV+ K +
Sbjct: 61  VPSGQEEFLKINEELSAVWPNITEKKDALPDYEKWDGVEGKLQ 103


>gi|254786793|ref|YP_003074222.1| ferredoxin-1 [Teredinibacter turnerae T7901]
 gi|237685053|gb|ACR12317.1| ferredoxin-1 [Teredinibacter turnerae T7901]
          Length = 107

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E +L++N+E A  WPNIT KKE+   A + DGV+ K +
Sbjct: 61  LPSDQEAFLELNAELAEVWPNITEKKEAPADAEEWDGVEGKLQ 103


>gi|148653815|ref|YP_001280908.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Psychrobacter sp. PRwf-1]
 gi|148572899|gb|ABQ94958.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Psychrobacter sp. PRwf-1]
          Length = 107

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E A +WPNIT  K  LP A K DGV+ K +
Sbjct: 61  VPKGQEEFIELNAELAEEWPNITEMKGQLPDAEKWDGVEGKIQ 103


>gi|148262070|ref|YP_001236197.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|326405582|ref|YP_004285664.1| ferredoxin [Acidiphilium multivorum AIU301]
 gi|146403751|gb|ABQ32278.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
 gi|325052444|dbj|BAJ82782.1| ferredoxin [Acidiphilium multivorum AIU301]
          Length = 110

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W++ N E+AT WPN+ T+K + P+ A     +    + FSP P
Sbjct: 61  GKASAWIEKNREFATLWPNM-TRKGTPPADADEWKDRDGKAELFSPEP 107


>gi|93005103|ref|YP_579540.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
           cryohalolentis K5]
 gi|92392781|gb|ABE74056.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
           cryohalolentis K5]
          Length = 107

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCILCK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCILCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++ ++N E A +WPNIT  K  +P A K DGV+ K +
Sbjct: 61  VPKGQEIFTQLNEELAQKWPNITEMKGQMPEAEKWDGVEGKIQ 103


>gi|158424426|ref|YP_001525718.1| ferredoxin [Azorhizobium caulinodans ORS 571]
 gi|158331315|dbj|BAF88800.1| ferredoxin [Azorhizobium caulinodans ORS 571]
          Length = 109

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+ CI CK+ DCV VCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MAYVVTDGCIRCKYMDCVSVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P    WL +N+EYA  WPNIT K E    A    G   K      P P  
Sbjct: 61  PRAGEWLALNAEYAATWPNITEKGEPPADADDWKGKAGKL-ALLDPAPAA 109


>gi|146308040|ref|YP_001188505.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145576241|gb|ABP85773.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           mendocina ymp]
          Length = 107

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NC+ CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCVKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N++ A  WPNIT KKE+LP A + DGVK K +
Sbjct: 61  VPEDMQEYIELNADLAEVWPNITEKKEALPDAEEWDGVKDKLQ 103


>gi|162147815|ref|YP_001602276.1| ferredoxin [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542438|ref|YP_002274667.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786392|emb|CAP55974.1| putative ferredoxin [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530115|gb|ACI50052.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 110

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN+ Y+ +WPNI T+K + P+ A+    K   +   SP P
Sbjct: 61  DRAAAWAEINASYSAKWPNI-TRKGTAPADAEEWKDKPGKKDLLSPEP 107


>gi|77457360|ref|YP_346865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
           Pf0-1]
 gi|77381363|gb|ABA72876.1| ferredoxin I [Pseudomonas fluorescens Pf0-1]
          Length = 107

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 78/101 (77%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              E+  ++++N E A  WPNIT KKESLP A + DGVK K
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKESLPDAEEWDGVKGK 101


>gi|330807813|ref|YP_004352275.1| ferredoxin I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375921|gb|AEA67271.1| ferredoxin I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 107

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 81/103 (78%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G+E ++++N+E A  WPNIT KK++LP A + DG + K +
Sbjct: 61  VPAGMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLK 103


>gi|57908873|gb|AAW59366.1| ferredoxin A [Azotobacter salinestris]
          Length = 107

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N+E A  WPNIT KKE+LP A   DGVK K +
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKEALPDAEDWDGVKGKLQ 103


>gi|329849717|ref|ZP_08264563.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
 gi|328841628|gb|EGF91198.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
          Length = 112

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 75/109 (68%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK  DCV+VCPVDCFYEGENFL I P  CIDCG+C PECPVDAIKP+ +
Sbjct: 1   MTYVVTDPCIKCKFMDCVDVCPVDCFYEGENFLVIDPAVCIDCGICVPECPVDAIKPEDK 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                WL IN+++   WPNIT K      +A  +    K+EKYFS  PG
Sbjct: 61  DTDGKWLAINTQFTAVWPNITRKGTPPADSADFERETGKFEKYFSERPG 109


>gi|15598817|ref|NP_252311.1| ferredoxin I [Pseudomonas aeruginosa PAO1]
 gi|116051618|ref|YP_789543.1| ferredoxin I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152985024|ref|YP_001346902.1| ferredoxin I [Pseudomonas aeruginosa PA7]
 gi|296387875|ref|ZP_06877350.1| ferredoxin I [Pseudomonas aeruginosa PAb1]
 gi|313108980|ref|ZP_07794955.1| ferredoxin I [Pseudomonas aeruginosa 39016]
 gi|81783634|sp|Q9HY07|FER1_PSEAE RecName: Full=Ferredoxin 1
 gi|9949779|gb|AAG07009.1|AE004782_7 ferredoxin I [Pseudomonas aeruginosa PAO1]
 gi|115586839|gb|ABJ12854.1| ferredoxin I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150960182|gb|ABR82207.1| ferredoxin I [Pseudomonas aeruginosa PA7]
 gi|310881457|gb|EFQ40051.1| ferredoxin I [Pseudomonas aeruginosa 39016]
          Length = 107

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQ 103


>gi|332969296|gb|EGK08322.1| ferredoxin [Psychrobacter sp. 1501(2011)]
          Length = 107

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E A +WPNIT   + LP A K DGV+ K +
Sbjct: 61  VPKGQEEFIALNAELAEEWPNITEMHDQLPDAEKWDGVEGKIQ 103


>gi|90416735|ref|ZP_01224665.1| ferredoxin I [marine gamma proteobacterium HTCC2207]
 gi|90331488|gb|EAS46724.1| ferredoxin I [marine gamma proteobacterium HTCC2207]
          Length = 107

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT++V +NCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI  + E
Sbjct: 1   MTFIVGDNCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVGAIFAEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++L+IN+E A  WPNIT  K++   AA+ DGV+ K +
Sbjct: 61  IPEGQEVFLEINAELADVWPNITEMKDAPADAAEWDGVENKLQ 103


>gi|49089178|gb|AAT51652.1| PA3621 [synthetic construct]
          Length = 108

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQ 103


>gi|302187930|ref|ZP_07264603.1| ferredoxin [Pseudomonas syringae pv. syringae 642]
 gi|330936780|gb|EGH40942.1| ferredoxin [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330975363|gb|EGH75429.1| ferredoxin [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 107

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGK 101


>gi|289626002|ref|ZP_06458956.1| ferredoxin [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651482|ref|ZP_06482825.1| ferredoxin [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488244|ref|ZP_07006279.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157252|gb|EFH98337.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868574|gb|EGH03283.1| ferredoxin [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330950645|gb|EGH50905.1| ferredoxin [Pseudomonas syringae Cit 7]
          Length = 107

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGK 101


>gi|312959253|ref|ZP_07773771.1| ferredoxin [Pseudomonas fluorescens WH6]
 gi|311286513|gb|EFQ65076.1| ferredoxin [Pseudomonas fluorescens WH6]
          Length = 107

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
              G+E ++++N E A  WPNIT +K+ +P AA+ DG   K E+
Sbjct: 61  VPAGMEQFIQLNVELAEVWPNITERKDPMPDAAEWDGKPNKIEQ 104


>gi|107103135|ref|ZP_01367053.1| hypothetical protein PaerPA_01004204 [Pseudomonas aeruginosa PACS2]
 gi|218890154|ref|YP_002439018.1| ferredoxin I [Pseudomonas aeruginosa LESB58]
 gi|254236536|ref|ZP_04929859.1| ferredoxin I [Pseudomonas aeruginosa C3719]
 gi|254242319|ref|ZP_04935641.1| ferredoxin I [Pseudomonas aeruginosa 2192]
 gi|126168467|gb|EAZ53978.1| ferredoxin I [Pseudomonas aeruginosa C3719]
 gi|126195697|gb|EAZ59760.1| ferredoxin I [Pseudomonas aeruginosa 2192]
 gi|218770377|emb|CAW26142.1| ferredoxin I [Pseudomonas aeruginosa LESB58]
          Length = 107

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +
Sbjct: 61  VPENMQEFIELNSELAEIWPNITEKKDALPDAEEWDGVAGKLQ 103


>gi|66044623|ref|YP_234464.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255330|gb|AAY36426.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
           syringae B728a]
 gi|330896093|gb|EGH28314.1| ferredoxin [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330968926|gb|EGH68992.1| ferredoxin [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 107

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 79/101 (78%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K
Sbjct: 61  IPAGMENFIELNAELAEIWPNITEKKDAMPDAAEWDGKTGK 101


>gi|237800177|ref|ZP_04588638.1| ferredoxin [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023034|gb|EGI03091.1| ferredoxin [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 107

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G+E ++++N+E A  WPNIT KK+ +P AA+ DG   K E
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDGMPDAAEWDGKPGKIE 103


>gi|330959230|gb|EGH59490.1| ferredoxin [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 107

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G+E ++++N+E A  WPNIT KK+++P AA+ DG
Sbjct: 61 IPAGMENFIELNAELADVWPNITEKKDAMPDAAEWDG 97


>gi|71736534|ref|YP_275946.1| ferredoxin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487048|ref|ZP_05641089.1| ferredoxin [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|71557087|gb|AAZ36298.1| ferredoxin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323088|gb|EFW79177.1| ferredoxin [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329640|gb|EFW85629.1| ferredoxin [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330878041|gb|EGH12190.1| ferredoxin [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894626|gb|EGH27287.1| ferredoxin [Pseudomonas syringae pv. mori str. 301020]
 gi|330985142|gb|EGH83245.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009313|gb|EGH89369.1| ferredoxin [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 107

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 78/97 (80%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G+E ++++N+E A  WPNIT KK+++P AA+ DG
Sbjct: 61 IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDG 97


>gi|110834671|ref|YP_693530.1| ferredoxin, 4Fe-4S [Alcanivorax borkumensis SK2]
 gi|110647782|emb|CAL17258.1| ferredoxin, 4Fe-4S [Alcanivorax borkumensis SK2]
          Length = 107

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 79/107 (73%), Gaps = 2/107 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEGENFL IHPDECIDC +CEPECPV+AI  + E
Sbjct: 1   MTFVVGENCINCKHTDCVEVCPVDCFYEGENFLVIHPDECIDCALCEPECPVNAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + +L+IN++ A +WPNIT  K++   A + DGV  K EK   
Sbjct: 61  LPDDQQDFLEINADLAEKWPNITEMKDAPDDAEEWDGVPNKREKLIR 107


>gi|167589295|ref|ZP_02381683.1| ferredoxin [Burkholderia ubonensis Bu]
          Length = 111

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CKHTDCVEVCPVDCF+EGENFL I PDECIDCGVCEPECPV AI+ D  
Sbjct: 1   MAYVVTENCINCKHTDCVEVCPVDCFHEGENFLVIDPDECIDCGVCEPECPVGAIRQDVA 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              +   +  +N E A  WP +T +K +LP AA+   V+ K+++ 
Sbjct: 61  LDADQVHYASLNRELAQSWPTLTIRKPALPDAAQWKDVEGKFQQL 105


>gi|52857658|gb|AAU89082.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 67/80 (83%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA   P +
Sbjct: 61 QNLEKWLGVNAEYAKTXPKL 80


>gi|170723212|ref|YP_001750900.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida W619]
 gi|169761215|gb|ACA74531.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
          putida W619]
          Length = 107

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G+E +L++N+E A  WPNIT +K++LP A + DG
Sbjct: 61 VPAGMENFLELNAELAEIWPNITERKDALPDAEEWDG 97


>gi|296115139|ref|ZP_06833780.1| ferredoxin [Gluconacetobacter hansenii ATCC 23769]
 gi|295978240|gb|EFG84977.1| ferredoxin [Gluconacetobacter hansenii ATCC 23769]
          Length = 110

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVISPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YA  WPNIT K ++ P+ A+    K    +  SP P
Sbjct: 61  DRATAWAEINAKYAGVWPNITRKGDA-PADAEEWKDKPNKAELLSPEP 107


>gi|167032191|ref|YP_001667422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida GB-1]
 gi|166858679|gb|ABY97086.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
           putida GB-1]
          Length = 107

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 78/101 (77%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E ++++N+E A  WPNIT +K++LP A + DG   K
Sbjct: 61  IPAGMENFIELNAELAEVWPNITERKDALPDAEEWDGKTGK 101


>gi|33150233|gb|AAP97087.1| ferredoxin [Pseudomonas chlororaphis]
          Length = 107

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 78/101 (77%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              E+  ++++N E A  WPNIT KK+SLP A + DGVK K
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKDSLPDAEEWDGVKGK 101


>gi|5305131|emb|CAB46192.1| ferrodoxin [Pseudomonas putida]
          Length = 107

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 78/101 (77%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E ++++N+E A  WPNIT +K++LP A + DG   K
Sbjct: 61  VPSGMENFIELNAELAEIWPNITERKDALPDAEEWDGKTGK 101


>gi|325277034|ref|ZP_08142695.1| ferredoxin [Pseudomonas sp. TJI-51]
 gi|324097831|gb|EGB96016.1| ferredoxin [Pseudomonas sp. TJI-51]
          Length = 107

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G+E ++++N+E A  WPNIT +K++LP A + DG
Sbjct: 61 VPAGMENFIELNAELAEIWPNITERKDALPDAEEWDG 97


>gi|104783163|ref|YP_609661.1| ferredoxin [Pseudomonas entomophila L48]
 gi|95112150|emb|CAK16877.1| ferredoxin [Pseudomonas entomophila L48]
          Length = 107

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G+E ++++N+E A  WPNIT KK++LP A + DG
Sbjct: 61 VPAGMENFIELNAELAEIWPNITEKKDALPDAEEWDG 97


>gi|326794018|ref|YP_004311838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinomonas mediterranea MMB-1]
 gi|326544782|gb|ADZ90002.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinomonas mediterranea MMB-1]
          Length = 107

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFIVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPAGAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N + A  WPNI  +K+ LP AA+ DGV+ K E
Sbjct: 61  LPEGQEVFIELNQDLALIWPNIAERKDPLPDAAQWDGVEDKLE 103


>gi|257454098|ref|ZP_05619372.1| ferredoxin-1 [Enhydrobacter aerosaccus SK60]
 gi|257448576|gb|EEV23545.1| ferredoxin-1 [Enhydrobacter aerosaccus SK60]
          Length = 107

 Score =  130 bits (328), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NC+ CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCVRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E A +WPNI+   + LP A + DGV  K +
Sbjct: 61  VPKGQEIYIELNAELAEKWPNISAMHDPLPDAKEWDGVPNKLQ 103


>gi|52857662|gb|AAU89084.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 66/79 (83%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +N+EYA   P 
Sbjct: 61 QNLEKWLGVNAEYAKTGPT 79


>gi|330504210|ref|YP_004381079.1| ferredoxin I [Pseudomonas mendocina NK-01]
 gi|328918496|gb|AEB59327.1| ferredoxin I [Pseudomonas mendocina NK-01]
          Length = 107

 Score =  130 bits (327), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N++ A  WPNIT KK++LP A + DGVK K +
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALPDAEEWDGVKDKLQ 103


>gi|26988357|ref|NP_743782.1| ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148549359|ref|YP_001269461.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida F1]
 gi|60392274|sp|P0A122|FER1_PSEPK RecName: Full=Ferredoxin 1
 gi|60392275|sp|P0A123|FER1_PSEPU RecName: Full=Ferredoxin 1
 gi|24983108|gb|AAN67246.1|AE016351_8 ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|7243294|dbj|BAA92688.1| ferrodoxin [Pseudomonas putida]
 gi|14646832|dbj|BAB62000.1| [3Fe-4S][4Fe-4S]ferredoxin [Pseudomonas putida]
 gi|148513417|gb|ABQ80277.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pseudomonas putida F1]
 gi|313500208|gb|ADR61574.1| FdxA [Pseudomonas putida BIRD-1]
          Length = 107

 Score =  130 bits (327), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
             G+E ++++N+E A  WPNIT +K++LP A + DG
Sbjct: 61 VPSGMENFIELNAELAEIWPNITERKDALPDAEEWDG 97


>gi|154248128|ref|YP_001419086.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Xanthobacter autotrophicus Py2]
 gi|154162213|gb|ABS69429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Xanthobacter autotrophicus Py2]
          Length = 110

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 64/83 (77%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTENCI C + DCV VCPVDCFY GEN L IHPDECIDCGVCEPECP  AI PD++
Sbjct: 1  MAYVVTENCIRCTYMDCVSVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAAAIFPDSD 60

Query: 61 PGLELWLKINSEYATQWPNITTK 83
          P    W  +N++YA QWPNIT K
Sbjct: 61 PRAGDWAALNAQYAAQWPNITEK 83


>gi|152997736|ref|YP_001342571.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Marinomonas sp. MWYL1]
 gi|150838660|gb|ABR72636.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Marinomonas
           sp. MWYL1]
          Length = 107

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFIVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E+++++N + +  WPNI  KK++LP AA+ DGV+ K E
Sbjct: 61  LPEDQEVFVELNRDLSLIWPNIAEKKDALPDAAQWDGVEDKLE 103


>gi|52857666|gb|AAU89086.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 65/74 (87%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYA 74
            LE WL +N+EYA
Sbjct: 61 QNLEKWLGVNAEYA 74


>gi|226945907|ref|YP_002800980.1| ferredoxin I [Azotobacter vinelandii DJ]
 gi|119918|sp|P00214|FER1_AZOVI RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|142304|gb|AAA22125.1| ferredoxin I [Azotobacter vinelandii]
 gi|226720834|gb|ACO80005.1| Ferredoxin I [Azotobacter vinelandii DJ]
          Length = 107

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 103


>gi|126667869|ref|ZP_01738835.1| RecA DNA recombination protein [Marinobacter sp. ELB17]
 gi|126627685|gb|EAZ98316.1| RecA DNA recombination protein [Marinobacter sp. ELB17]
          Length = 107

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT++VT+NCI CKHTDCVEVCPVDCFYEG NFL I PDECIDC +CEPECPV+AI  + E
Sbjct: 1   MTFIVTDNCIKCKHTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPVEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                ++++++N++ A +WPNIT KKE++  A K DGV  K +
Sbjct: 61  LPDNQKVFIELNADLAGKWPNITEKKEAMVDAEKWDGVPDKLQ 103


>gi|90020902|ref|YP_526729.1| RecA DNA recombination protein [Saccharophagus degradans 2-40]
 gi|89950502|gb|ABD80517.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 107

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV +NCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGDNCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +L++N+E A  WPNIT KK++   A + DGV+ K +
Sbjct: 61  LPDDQQAFLELNAELAEVWPNITEKKDAPADAEEWDGVEGKLQ 103


>gi|256822660|ref|YP_003146623.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Kangiella koreensis DSM 16069]
 gi|256796199|gb|ACV26855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kangiella
           koreensis DSM 16069]
          Length = 107

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + D
Sbjct: 1   MAFVVTDNCIQCKYTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPAEAIFEEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G+E ++++N+E + +WPNIT KK+ LP A + DG   K E
Sbjct: 61  IPAGMEHFIELNAELSEEWPNITEKKDPLPDAEEWDGKPNKLE 103


>gi|114326978|ref|YP_744135.1| ferredoxin [Granulibacter bethesdensis CGDNIH1]
 gi|114315152|gb|ABI61212.1| ferredoxin [Granulibacter bethesdensis CGDNIH1]
          Length = 132

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 74/109 (67%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK  DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 23  MAYVVTENCIRCKFMDCVEVCPVDCFYVGENMLVIHPDECIDCGVCEPECPAEAIFPDSD 82

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                W + N  YA+ WPNIT K E  P+ A+    K    + FS  PG
Sbjct: 83  DRATAWAEKNRTYASVWPNITRKGEP-PADAEEWKDKPGKAELFSTEPG 130


>gi|70728590|ref|YP_258339.1| ferredoxin [Pseudomonas fluorescens Pf-5]
 gi|68342889|gb|AAY90495.1| ferredoxin [Pseudomonas fluorescens Pf-5]
          Length = 107

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              E+  ++++N E A  WPNIT KK+ LP A + DGVK K
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGK 101


>gi|46371302|gb|AAS90417.1| ferredoxin A [Azotobacter chroococcum]
          Length = 107

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N++ A  WPNIT KKE+L  A   DGVK K +
Sbjct: 61  VPEDMQEFIQMNADLAEVWPNITEKKEALSDAEDWDGVKGKLQ 103


>gi|87122438|ref|ZP_01078318.1| ferredoxin I [Marinomonas sp. MED121]
 gi|86162231|gb|EAQ63516.1| ferredoxin I [Marinomonas sp. MED121]
          Length = 107

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPASAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E ++++N++ A  WPNIT KK++L  AA  DGV+ K E
Sbjct: 61  LPEDQEHFVELNADLANVWPNITEKKDALADAATWDGVEDKLE 103


>gi|157831121|pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            YVVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AYVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|146281878|ref|YP_001172031.1| ferredoxin I [Pseudomonas stutzeri A1501]
 gi|147744561|sp|P08811|FER_PSEST RecName: Full=Ferredoxin 1
 gi|145570083|gb|ABP79189.1| ferredoxin I [Pseudomonas stutzeri A1501]
 gi|327480121|gb|AEA83431.1| ferredoxin I [Pseudomonas stutzeri DSM 4166]
          Length = 107

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 103


>gi|50250469|emb|CAH03855.1| Ferredoxin I [Pseudomonas stutzeri]
          Length = 106

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 81/112 (72%), Gaps = 8/112 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + ++++N++ A  WPNIT KK++L  A + DGVK K +      PGG
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ------PGG 106


>gi|229588702|ref|YP_002870821.1| ferredoxin I [Pseudomonas fluorescens SBW25]
 gi|37930233|gb|AAP76284.1| unknown [Pseudomonas sp. PCL1171]
 gi|229360568|emb|CAY47425.1| ferredoxin I [Pseudomonas fluorescens SBW25]
          Length = 107

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              E+  ++++N E A  WPNIT +K+ +P AA+ DG K K
Sbjct: 61  VPAEMQEFIQLNVELAEIWPNITERKDPMPDAAEWDGKKGK 101


>gi|142307|gb|AAA16869.1| fdxA [Azotobacter vinelandii]
 gi|20455804|gb|AAM22287.1| ferredoxin A [Azotobacter vinelandii]
          Length = 107

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEP CP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPRCPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 103


>gi|52857654|gb|AAU89080.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 65/74 (87%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYA 74
            LE WL +++EYA
Sbjct: 61 QNLEKWLGVSAEYA 74


>gi|58257339|gb|AAK30050.2| ferredoxin [Pseudomonas fluorescens]
          Length = 107

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 77/101 (76%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV++CPVDCFY+G NFL IHPDECIDC +CEP CP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVKICPVDCFYKGPNFLVIHPDECIDCALCEPRCPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
             P ++ ++++N E A  WPNIT KK+ LP A + DGVK K
Sbjct: 61  VPPDMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGK 101


>gi|329896375|ref|ZP_08271474.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC3088]
 gi|328921795|gb|EGG29166.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC3088]
          Length = 107

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCINCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++L++N+E A  WPNIT  K++LP A +  G   K 
Sbjct: 61  LPEDQQVFLELNAELAEIWPNITEMKDALPDAEEWAGKSNKL 102


>gi|304310610|ref|YP_003810208.1| FDX ferredoxin [gamma proteobacterium HdN1]
 gi|301796343|emb|CBL44551.1| FDX ferredoxin [gamma proteobacterium HdN1]
          Length = 107

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 76/101 (75%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+E A +WPNIT KK+ LP A + DG   K
Sbjct: 61  VPDDQQQFIPLNAELAEKWPNITEKKDPLPEAKEWDGKPDK 101


>gi|157830133|pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
 gi|157831044|pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|157831045|pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|157831059|pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
           Vinelandii At 2.3 Angstroms Resolution
 gi|157837034|pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|225734355|pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
           Temperature, 1.35 A
          Length = 106

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|37927460|pdb|1PC4|A Chain A, Crystal Structure Of The P50a Mutant Of Ferredoxin I At
           1.65 A Resolution
          Length = 107

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPEC   AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 103


>gi|157884757|pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
           Dithionite Reduced At Ph 8.5, Resolution 1.4 A
 gi|157884763|pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
           K, 1.35 A
 gi|157884764|pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
           Reduced, Ph 8.5, 1.4a Resolution, 100 K
          Length = 106

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|119504839|ref|ZP_01626917.1| RecA DNA recombination protein [marine gamma proteobacterium
           HTCC2080]
 gi|119459444|gb|EAW40541.1| RecA DNA recombination protein [marine gamma proteobacterium
           HTCC2080]
          Length = 107

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP+DAI  + E
Sbjct: 1   MTFVVGEDCINCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPIDAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E +L +N+E A  WPNIT KK +L  A    G   K 
Sbjct: 61  LPAGQEQFLALNTELADIWPNITEKKPALEDAEAWTGKSDKL 102


>gi|91983730|gb|ABE68871.1| FdxA [Pseudomonas sp. P97.26]
          Length = 104

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 76/94 (80%), Gaps = 2/94 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPT 60

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          G+E ++++N+E A  WPNIT +K++LP AA+ DG
Sbjct: 61 GMENFIELNAELADIWPNITERKDALPDAAEWDG 94


>gi|9256973|pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score =  126 bits (317), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AHVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|91983680|gb|ABE68846.1| FdxA [Pseudomonas sp. F113]
          Length = 104

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%), Gaps = 2/98 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          G+E ++++N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGK 98


>gi|91983712|gb|ABE68862.1| FdxA [Pseudomonas sp. Q12-87]
          Length = 104

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 78/100 (78%), Gaps = 2/100 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           G+E ++++N+E A  WPNIT KK++LP A + DG + K +
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLK 100


>gi|307546338|ref|YP_003898817.1| ferredoxin [Halomonas elongata DSM 2581]
 gi|307218362|emb|CBV43632.1| K05524 ferredoxin [Halomonas elongata DSM 2581]
          Length = 107

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +++IN+E +  WPNIT KK+    A + DG   K E
Sbjct: 61  LPEGQEQFIEINAELSETWPNITEKKDPPEDAEEWDGKTGKLE 103


>gi|91983682|gb|ABE68847.1| FdxA [Pseudomonas sp. Q65c-80]
 gi|91983716|gb|ABE68864.1| FdxA [Pseudomonas sp. TM1A3]
 gi|91983718|gb|ABE68865.1| FdxA [Pseudomonas sp. C*1A1]
 gi|91983720|gb|ABE68866.1| FdxA [Pseudomonas sp. TM1B2]
 gi|91983732|gb|ABE68872.1| FdxA [Pseudomonas sp. K93.3]
 gi|91983734|gb|ABE68873.1| FdxA [Pseudomonas sp. P96.25]
          Length = 104

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 78/100 (78%), Gaps = 2/100 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           G+E ++++N+E A  WPNIT KK++LP A + DG + K +
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLK 100


>gi|37927462|pdb|1PC5|A Chain A, Crystal Structure Of The P50g Mutant Of Ferredoxin I At
           1.8 A Resolution
          Length = 107

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPEC   AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECGAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 103


>gi|120555004|ref|YP_959355.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324853|gb|ABM19168.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Marinobacter
           aquaeolei VT8]
          Length = 107

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 76/101 (75%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFIVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G E +++IN+E A +WPNIT KK+ LP A + DG   K
Sbjct: 61  LPAGQEAFVEINAELAGKWPNITEKKDPLPDAEEWDGKPDK 101


>gi|12084520|pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084521|pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084522|pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084523|pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
          Length = 106

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC  CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|92112753|ref|YP_572681.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91795843|gb|ABE57982.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 107

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E +  WPNI+ KK+ LP A + DG   K +
Sbjct: 61  LPDDQKAFIELNAELSEVWPNISEKKDPLPDAEEWDGKTDKLQ 103


>gi|2098504|pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
 gi|2098505|pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKXTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|296932695|gb|ADH93501.1| ferredoxin I [Pseudomonas sp. In5]
          Length = 104

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 75/98 (76%), Gaps = 2/98 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPE 60

Query: 64 EL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          E+  ++++N E A  WPNIT KKES+P A + DGVK K
Sbjct: 61 EMQEFIQLNVELAEIWPNITEKKESMPDAEEWDGVKGK 98


>gi|361779|prf||1410240A ferredoxin
          Length = 106

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           T+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   TFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  PEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 102


>gi|91983710|gb|ABE68861.1| FdxA [Pseudomonas sp. Q13-87]
 gi|91983726|gb|ABE68869.1| FdxA [Pseudomonas sp. Q7-87]
          Length = 104

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 75/94 (79%), Gaps = 2/94 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          G+E ++++N+E A  WPNIT KK++LP A + DG
Sbjct: 61 GMENFIELNAELADIWPNITEKKDALPDAEEWDG 94


>gi|157831125|pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPD CIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDSCIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|148260834|ref|YP_001234961.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acidiphilium cryptum JF-5]
 gi|326404228|ref|YP_004284310.1| ferredoxin [Acidiphilium multivorum AIU301]
 gi|146402515|gb|ABQ31042.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Acidiphilium cryptum JF-5]
 gi|325051090|dbj|BAJ81428.1| ferredoxin [Acidiphilium multivorum AIU301]
          Length = 110

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 64/83 (77%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE+CI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1  MAYVVTESCIKCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61 PGLELWLKINSEYATQWPNITTK 83
             + W+  N E A  WPNIT K
Sbjct: 61 AKADAWIDQNRELAALWPNITRK 83


>gi|157872416|pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
           Azotobacter Vinelandii At 1.7 Angstrom Resolution
          Length = 106

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T+CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTECVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|157831122|pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPV+CFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVNCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|157831046|pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
           Facilitates Proton Transfer To The Reduced [3fe-4s]
           Cluster
          Length = 106

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T+CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTNCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|121998437|ref|YP_001003224.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121589842|gb|ABM62422.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 107

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + D
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIYSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             P +E +L++N+E A +WP IT KK+  P A + DG   K +
Sbjct: 61  LPPSMEHFLELNAELAQKWPLITEKKDPPPDAEEWDGKPDKLQ 103


>gi|157831126|pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +C PECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCAPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|46371298|gb|AAS90414.1| ferredoxin A [Azomonas macrocytogenes]
          Length = 107

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVRPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N++ A  WPNIT KKE+L  A   DGVK K +
Sbjct: 61  VPEDMQEFIQLNADLAEVWPNITEKKEALSDAEDWDGVKGKLQ 103


>gi|88798288|ref|ZP_01113874.1| ferrodoxin, 4Fe-4S [Reinekea sp. MED297]
 gi|88779064|gb|EAR10253.1| ferrodoxin, 4Fe-4S [Reinekea sp. MED297]
          Length = 107

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 77/101 (76%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV ENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFVVIENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAILSEDE 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            P  ++ ++++N+E A  WPNIT +K+ LP A + +GV  K
Sbjct: 61  VPADQIDFIELNAELAEVWPNITEQKDPLPDADEQNGVPNK 101


>gi|91983686|gb|ABE68849.1| FdxA [Pseudomonas sp. PITR2]
          Length = 104

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 75/98 (76%), Gaps = 2/98 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPT 60

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          G+E ++++N+E A  WPNIT KK++LP A + DG   K
Sbjct: 61 GMENFIELNAELADIWPNITEKKDALPDAEEWDGKTGK 98


>gi|157831123|pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDC YEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCIYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|330993479|ref|ZP_08317414.1| Ferredoxin-2 [Gluconacetobacter sp. SXCC-1]
 gi|329759509|gb|EGG76018.1| Ferredoxin-2 [Gluconacetobacter sp. SXCC-1]
          Length = 107

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 1/105 (0%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +VTENCI CK TDCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++   
Sbjct: 1   MVTENCIRCKFTDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSDDRA 60

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
             W ++N++YA  WPNIT K ++ P+ A+    K   ++  SP P
Sbjct: 61  TPWAELNAKYAAVWPNITRKLDA-PADAEEWKDKPNKKELLSPEP 104


>gi|157831043|pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
           Ferredoxin I. (Fe-S) Cluster-Driven Protein
           Rearrangement
          Length = 106

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVAPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|157834956|pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants Of
           Azotobacter Vinelandii Ferredoxin
          Length = 106

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVD FYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|11513606|pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
          Length = 106

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CE ECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCESECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|11514021|pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
          Length = 106

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVE CPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|157829710|pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+ DCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYCDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|157831128|pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
          Length = 106

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVSPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|6980482|pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980483|pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980484|pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980485|pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDEC DC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECNDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|319786641|ref|YP_004146116.1| hypothetical protein Psesu_1035 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465153|gb|ADV26885.1| hypothetical protein Psesu_1035 [Pseudoxanthomonas suwonensis 11-1]
          Length = 107

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E +  WP IT +KE LP AA+ DG   K +
Sbjct: 61  VPAGQEGFVALNAELSRAWPVITVRKEPLPDAAEWDGKGDKLK 103


>gi|9256974|pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDC YEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCHYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|254499063|ref|ZP_05111755.1| ferredoxin II (4Fe-4S) [Legionella drancourtii LLAP12]
 gi|254351690|gb|EET10533.1| ferredoxin II (4Fe-4S) [Legionella drancourtii LLAP12]
          Length = 109

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + D
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A +W NIT KK++ P A   + VK K +
Sbjct: 61  LTDEQQQFKELNAELAQKWSNITAKKDAPPDAKDWEDVKDKLQ 103


>gi|157831124|pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  124 bits (311), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|91983728|gb|ABE68870.1| FdxA [Pseudomonas sp. P97.6]
          Length = 104

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 74/94 (78%), Gaps = 2/94 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          G E ++++N+E A  WPNIT KK++LP A + DG
Sbjct: 61 GQENFIELNAELADIWPNITEKKDALPDAEEWDG 94


>gi|54297846|ref|YP_124215.1| hypothetical protein lpp1898 [Legionella pneumophila str. Paris]
 gi|53751631|emb|CAH13050.1| hypothetical protein lpp1898 [Legionella pneumophila str. Paris]
          Length = 111

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + D
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + K+N+E +  WPNIT KK++   A   + VK K +
Sbjct: 61  LTEEQQQFKKLNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQ 103


>gi|10120847|pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
           Vinelandii 7fe Ferredoxin (Fdi)
          Length = 106

 Score =  123 bits (309), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECID  +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDDALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQ 102


>gi|91983674|gb|ABE68843.1| FdxA [Pseudomonas protegens]
 gi|91983704|gb|ABE68858.1| FdxA [Pseudomonas protegens]
 gi|91983706|gb|ABE68859.1| FdxA [Pseudomonas sp. K94.41]
 gi|91983708|gb|ABE68860.1| FdxA [Pseudomonas sp. S8-62]
 gi|91983722|gb|ABE68867.1| FdxA [Pseudomonas protegens]
 gi|91983724|gb|ABE68868.1| FdxA [Pseudomonas protegens]
          Length = 104

 Score =  123 bits (308), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 74/98 (75%), Gaps = 2/98 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPE 60

Query: 64 EL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          E+  ++++N E A  WPNIT KK+ LP A + DGVK K
Sbjct: 61 EMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGK 98


>gi|239948395|ref|ZP_04700148.1| ferredoxin [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922671|gb|EER22695.1| ferredoxin [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 109

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCIPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++   ++     W NIT KK +LP A K    K K+ KY +
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKKKPALPDADKFKDEKDKFNKYIN 106


>gi|6729695|pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
          Length = 106

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTKCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              ++ ++++N+E A  WPNIT  K+ LP A   DGVK K +
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEDKDPLPDAEDWDGVKGKLQ 102


>gi|149374516|ref|ZP_01892290.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
 gi|149361219|gb|EDM49669.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
          Length = 107

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  ++ ++++N++ A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  LPADQVQFVELNADLAGKWPNITEKKDPLPEAEEWDGKPDKLQ 103


>gi|91983678|gb|ABE68845.1| FdxA [Pseudomonas sp. PILH1]
          Length = 104

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/98 (62%), Positives = 74/98 (75%), Gaps = 2/98 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
          VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1  VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPA 60

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          G+E ++++N+E A  WPNIT KK+ +P A + DG   K
Sbjct: 61 GMENFIELNAELADVWPNITEKKDPMPGAEEWDGKTGK 98


>gi|21231193|ref|NP_637110.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66768799|ref|YP_243561.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991913|ref|YP_001903923.1| hypothetical protein xccb100_2518 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112835|gb|AAM41034.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574131|gb|AAY49541.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733673|emb|CAP51878.1| fdx [Xanthomonas campestris pv. campestris]
          Length = 107

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHAGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +T ++E LP AA+ DG   K 
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTVRQEPLPDAAEWDGKPDKL 102


>gi|254282951|ref|ZP_04957919.1| RecA DNA recombination protein [gamma proteobacterium NOR51-B]
 gi|219679154|gb|EED35503.1| RecA DNA recombination protein [gamma proteobacterium NOR51-B]
          Length = 107

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              +   ++++N+E A  WPNIT KK+  P A    G   K +
Sbjct: 61  LPADQTEFMELNAELADIWPNITEKKDPPPDAEDWAGKPDKLQ 103


>gi|86157959|ref|YP_464744.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197122738|ref|YP_002134689.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|220917521|ref|YP_002492825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774470|gb|ABC81307.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|196172587|gb|ACG73560.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|219955375|gb|ACL65759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 107

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 74/104 (71%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDCG CEP CP  AI P+  
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCGACEPACPTKAIFPEES 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
              +   ++++NSE +  WPNIT KK+ LP A +   V++K +K
Sbjct: 61  LPAKWNEYVQLNSELSKAWPNITEKKDPLPEAEEWKDVEEKRDK 104


>gi|9622249|gb|AAF89693.1|AF170100_1 ferredoxin A [Pseudomonas aeruginosa]
          Length = 107

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI  +   CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIQVQIHHCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|296107515|ref|YP_003619216.1| ferredoxin II (4Fe-4S) [Legionella pneumophila 2300/99 Alcoy]
 gi|295649417|gb|ADG25264.1| ferredoxin II (4Fe-4S) [Legionella pneumophila 2300/99 Alcoy]
          Length = 111

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + D
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E +  WPNIT KK++   A   + VK K +
Sbjct: 61  LTDEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQ 103


>gi|52842141|ref|YP_095940.1| ferredoxin II (4Fe-4S) [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|54294810|ref|YP_127225.1| hypothetical protein lpl1887 [Legionella pneumophila str. Lens]
 gi|52629252|gb|AAU27993.1| ferredoxin II (4Fe-4S) [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53754642|emb|CAH16126.1| hypothetical protein lpl1887 [Legionella pneumophila str. Lens]
          Length = 111

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + D
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E +  WPNIT KK++   A   + VK K +
Sbjct: 61  LTEEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQ 103


>gi|289669666|ref|ZP_06490741.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 107

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +T ++E+LP AA+ DG   K 
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEALPDAAEWDGKPNKL 102


>gi|270157017|ref|ZP_06185674.1| ferredoxin-1 [Legionella longbeachae D-4968]
 gi|289164568|ref|YP_003454706.1| ferredoxin [Legionella longbeachae NSW150]
 gi|269989042|gb|EEZ95296.1| ferredoxin-1 [Legionella longbeachae D-4968]
 gi|288857741|emb|CBJ11585.1| putative ferredoxin [Legionella longbeachae NSW150]
          Length = 109

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHP+ECIDC +CEPECPV+AI  + D
Sbjct: 1   MTFVVTESCIKCKYTDCVEVCPVDCFYEGPNFLVIHPEECIDCALCEPECPVNAIVSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             P  + + ++N++ +  WPNIT+KK++   A   + VK K +
Sbjct: 61  LTPEQQQFKELNAKLSKNWPNITSKKDAPADAKDWEEVKDKLQ 103


>gi|190571735|ref|YP_001976093.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019223|ref|ZP_03335030.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190358007|emb|CAQ55475.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995332|gb|EEB55973.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 125

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/126 (53%), Positives = 80/126 (63%), Gaps = 17/126 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 59  TEPGLEL--------------WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            +  LEL              +  IN EY+ +WPNIT KK+SL +A +    K K   YF
Sbjct: 61  IKDILELDEGLLNNEQKIFKSFYNINVEYSQKWPNITAKKQSLDTAEEYKEKKDK-TAYF 119

Query: 105 SPNPGG 110
             N G 
Sbjct: 120 DENLGS 125


>gi|285017975|ref|YP_003375686.1| ferredoxin protein [Xanthomonas albilineans GPE PC73]
 gi|283473193|emb|CBA15699.1| putative ferredoxin protein [Xanthomonas albilineans]
          Length = 107

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHAGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +TT++E L  AA+ DG   K 
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTTRQEPLADAAEWDGKPNKL 102


>gi|91983714|gb|ABE68863.1| FdxA [Pseudomonas sp. Q128-87]
          Length = 104

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 75/97 (77%), Gaps = 2/97 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 4   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 63

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            ++++N+E A  WPNIT KK++LP A + DG + K +
Sbjct: 64  NFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLK 100


>gi|311693936|gb|ADP96809.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [marine
           bacterium HP15]
          Length = 119

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 13  MAFIVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 72

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  ++ ++++N++ A +WPNIT KK+ LP A + DG   K +
Sbjct: 73  LPADQVQFVELNADLAAKWPNITEKKDPLPDAEEWDGKPNKLQ 115


>gi|91983694|gb|ABE68853.1| FdxA [Pseudomonas sp. K94.37]
          Length = 101

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 2/95 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
          +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 1  DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 60

Query: 65 LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           ++++N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 NFIELNAELAEIWPNITEKKDALPDAEEWDGKEGK 95


>gi|157826297|ref|YP_001494017.1| ferredoxin [Rickettsia akari str. Hartford]
 gi|157800255|gb|ABV75509.1| Ferredoxin [Rickettsia akari str. Hartford]
          Length = 109

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++   ++     W NIT  K +LP A K    K K+ KY +
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKNKPALPDADKFKDEKNKFNKYIN 106


>gi|91983698|gb|ABE68855.1| FdxA [Pseudomonas sp. P97.30]
 gi|91983700|gb|ABE68856.1| FdxA [Pseudomonas sp. K94.31]
          Length = 101

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 2/95 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
          +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 1  DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 60

Query: 65 LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           ++++N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 NFIELNAELADIWPNITEKKDALPDAEEWDGKEGK 95


>gi|91983672|gb|ABE68842.1| FdxA [Pseudomonas protegens]
          Length = 103

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 73/97 (75%), Gaps = 2/97 (2%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          VT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   E
Sbjct: 1  VTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPEE 60

Query: 65 L--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +  ++++N E A  WPNIT KK+ LP A + DGVK K
Sbjct: 61 MQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGK 97


>gi|15604660|ref|NP_221178.1| ferredoxin (fdxA) [Rickettsia prowazekii str. Madrid E]
 gi|6647508|sp|Q9ZCC8|FER_RICPR RecName: Full=Ferredoxin
 gi|3861355|emb|CAA15254.1| FERREDOXIN (fdxA) [Rickettsia prowazekii]
 gi|292572488|gb|ADE30403.1| Ferredoxin [Rickettsia prowazekii Rp22]
          Length = 109

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P L  W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 60  PELIEWVERAKDFIENHGWKNITKKKCALPGADKFKDEKDKFNKYI 105


>gi|91983684|gb|ABE68848.1| FdxA [Pseudomonas sp. CM1A2]
          Length = 103

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 74/95 (77%), Gaps = 2/95 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
          +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 3  DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 62

Query: 65 LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           ++++N+E A  WPNIT KK++LP A + DG + K
Sbjct: 63 NFIELNAELADIWPNITEKKDALPDAEEWDGKEGK 97


>gi|51473997|ref|YP_067754.1| ferredoxin [Rickettsia typhi str. Wilmington]
 gi|81692331|sp|Q68Y04|FER_RICTY RecName: Full=Ferredoxin
 gi|51460309|gb|AAU04272.1| ferredoxin [Rickettsia typhi str. Wilmington]
          Length = 110

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 3/109 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYIVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           P L  W++   ++     W NIT KK +LP A K    + K+ KY   N
Sbjct: 60  PELIEWVERAKDFIENQGWKNITKKKCALPDADKFKDEQDKFNKYIIKN 108


>gi|166711847|ref|ZP_02243054.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|289662698|ref|ZP_06484279.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|325924485|ref|ZP_08186004.1| ferredoxin [Xanthomonas gardneri ATCC 19865]
 gi|325544980|gb|EGD16315.1| ferredoxin [Xanthomonas gardneri ATCC 19865]
          Length = 107

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +T ++E LP AA+ DG   K 
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEPLPDAAEWDGKPNKL 102


>gi|194365291|ref|YP_002027901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Stenotrophomonas maltophilia R551-3]
 gi|194348095|gb|ACF51218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Stenotrophomonas maltophilia R551-3]
          Length = 107

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CKHTDCVEVCPVDCF+EG NFL I PDECIDC +CEPECPV+AI P  D
Sbjct: 1   MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E A +WP +T +K+    A + DG   K +
Sbjct: 61  VPAGQESFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLK 103


>gi|91983676|gb|ABE68844.1| FdxA [Pseudomonas sp. Q2-87]
          Length = 104

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 73/95 (76%), Gaps = 2/95 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
          +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 4  DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 63

Query: 65 LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           ++++N+E A  WPNIT KK++LP A + DG   K
Sbjct: 64 NFIELNAELADIWPNITEKKDALPDAEEWDGKPGK 98


>gi|1589261|prf||2210388A ferredoxin:ISOTYPE=II
          Length = 104

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 74/109 (67%), Gaps = 12/109 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVC PECP +AI       
Sbjct: 2   YVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCNPECPAEAIAGK---- 57

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK--YFSPNPG 109
              WL+IN ++A  WPNIT K    P+ A  D  K K +K    S NPG
Sbjct: 58  ---WLEINRKFADLWPNITRKG---PALADADDWKDKPDKTGLLSENPG 100


>gi|190573755|ref|YP_001971600.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|254523787|ref|ZP_05135842.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|190011677|emb|CAQ45296.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|219721378|gb|EED39903.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 107

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CKHTDCVEVCPVDCF+EG NFL I PDECIDC +CEPECPV+AI P  D
Sbjct: 1   MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E A +WP +T +K+    A + DG   K +
Sbjct: 61  VPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLK 103


>gi|325917219|ref|ZP_08179445.1| ferredoxin [Xanthomonas vesicatoria ATCC 35937]
 gi|325536560|gb|EGD08330.1| ferredoxin [Xanthomonas vesicatoria ATCC 35937]
          Length = 107

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +T ++E LP AA  DG   K 
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEPLPDAADWDGKPNKL 102


>gi|67459707|ref|YP_247331.1| ferredoxin [Rickettsia felis URRWXCal2]
 gi|75535902|sp|Q4UJX3|FER_RICFE RecName: Full=Ferredoxin
 gi|67005240|gb|AAY62166.1| Ferredoxin [Rickettsia felis URRWXCal2]
          Length = 109

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + C+ CK+TDCV+VCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVNDECVKCKYTDCVDVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++   ++     W NIT KK +LP A K    K K+ KY +
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKKKPALPDADKFKDEKNKFNKYIN 106


>gi|220934455|ref|YP_002513354.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995765|gb|ACL72367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 107

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VV ENCI CK+TDCVEVCPVDCF+EG NFL I P+ECIDC +CEPECP +AI P  D
Sbjct: 1   MTFVVIENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPEECIDCTLCEPECPAEAIVPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
              G E +L++N+E + QWP ITT+KE    A + DG   K  KY  
Sbjct: 61  IPEGQEDFLELNAELSRQWPVITTRKEPPADAEEWDGKPDKL-KYLE 106


>gi|91206087|ref|YP_538442.1| ferredoxin [Rickettsia bellii RML369-C]
 gi|157826613|ref|YP_001495677.1| ferredoxin [Rickettsia bellii OSU 85-389]
 gi|122425218|sp|Q1RH11|FER_RICBR RecName: Full=Ferredoxin
 gi|91069631|gb|ABE05353.1| Ferredoxin [Rickettsia bellii RML369-C]
 gi|157801917|gb|ABV78640.1| Ferredoxin [Rickettsia bellii OSU 85-389]
          Length = 107

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 75/107 (70%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP+T 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPET- 59

Query: 61  PGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++    +    +W  IT KK +LP A K    K K+ KY  
Sbjct: 60  PELIEWVERAKHFIEHEKWQVITKKKPALPDADKFKDEKDKFNKYIG 106


>gi|1169669|sp|P80448|FER2_RHORU RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II; Short=FdII
          Length = 106

 Score =  120 bits (301), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 74/109 (67%), Gaps = 12/109 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVC PECP +AI       
Sbjct: 2   YVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCNPECPAEAIAGK---- 57

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK--YFSPNPG 109
              WL+IN ++A  WPNIT K    P+ A  D  K K +K    S NPG
Sbjct: 58  ---WLEINRKFADLWPNITRKG---PALADADDWKDKPDKTGLLSENPG 100


>gi|148284852|ref|YP_001248942.1| ferredoxin [Orientia tsutsugamushi str. Boryong]
 gi|146740291|emb|CAM80671.1| Ferredoxin [Orientia tsutsugamushi str. Boryong]
          Length = 106

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT++C+ CK+TDCVEVCPVDCF+EGE  + I P++CIDCGVCE ECPV AIKP+ E
Sbjct: 1   MTYVVTDSCVKCKYTDCVEVCPVDCFHEGEMMVVIDPEKCIDCGVCEAECPVGAIKPEAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             ++ W+++  E++ +WP I  KK  LP A        K+EKY
Sbjct: 61  ELIK-WIELGQEFSKKWPQILHKKAPLPQADLYKDKTNKFEKY 102


>gi|21242508|ref|NP_642090.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|78047349|ref|YP_363524.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|294626612|ref|ZP_06705209.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294666343|ref|ZP_06731591.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325927274|ref|ZP_08188530.1| ferredoxin [Xanthomonas perforans 91-118]
 gi|21107958|gb|AAM36626.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|78035779|emb|CAJ23470.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|292599032|gb|EFF43172.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292603892|gb|EFF47295.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325542350|gb|EGD13836.1| ferredoxin [Xanthomonas perforans 91-118]
          Length = 107

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +T ++E  P AA+ DG   K 
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTVRQEPAPDAAEWDGKPNKL 102


>gi|189184160|ref|YP_001937945.1| ferredoxin [Orientia tsutsugamushi str. Ikeda]
 gi|189180931|dbj|BAG40711.1| ferredoxin [Orientia tsutsugamushi str. Ikeda]
          Length = 106

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT++C+ CK+TDCVEVCPVDCF+EGE  + I P++CIDCGVCE ECPV AIKP+ E
Sbjct: 1   MTYVVTDSCVKCKYTDCVEVCPVDCFHEGEMMVVIDPEKCIDCGVCEAECPVGAIKPEAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             ++ W+++  E++ +WP I  KK  LP A        K+EKY
Sbjct: 61  ELIK-WIELGQEFSKKWPQILHKKAPLPQADLYKDETNKFEKY 102


>gi|307824341|ref|ZP_07654567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacter
           tundripaludum SV96]
 gi|307734721|gb|EFO05572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacter
           tundripaludum SV96]
          Length = 107

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK TDCV+VCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKFTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIFAEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++ +N+E A QWP IT  K +LP A + +G + K +
Sbjct: 61  LPEGQEVFIALNAELAKQWPVITDVKPALPEADEWNGKEGKLD 103


>gi|157829118|ref|YP_001495360.1| ferredoxin [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933842|ref|YP_001650631.1| ferredoxin [Rickettsia rickettsii str. Iowa]
 gi|157801599|gb|ABV76852.1| ferredoxin [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908929|gb|ABY73225.1| ferredoxin [Rickettsia rickettsii str. Iowa]
          Length = 116

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 7/111 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY  
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYIG 110


>gi|15893206|ref|NP_360920.1| ferredoxin [Rickettsia conorii str. Malish 7]
 gi|81774396|sp|Q92G41|FER_RICCN RecName: Full=Ferredoxin
 gi|15620421|gb|AAL03821.1| ferredoxin [Rickettsia conorii str. Malish 7]
          Length = 116

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 7/111 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY  
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYIG 110


>gi|91983690|gb|ABE68851.1| FdxA [Pseudomonas sp. P12]
          Length = 101

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 2/95 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
          +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E
Sbjct: 1  DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGME 60

Query: 65 LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           ++ +N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 NFIVLNAELAEIWPNITEKKDALPDAEEWDGKEGK 95


>gi|114320642|ref|YP_742325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227036|gb|ABI56835.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 107

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + D
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIYSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +L +N+E A +WP IT +K+    A + DG   K E
Sbjct: 61  LPAGQEEFLALNAELAQEWPVITEQKDPPEDADEWDGKPNKLE 103


>gi|253996373|ref|YP_003048437.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylotenera mobilis JLW8]
 gi|253983052|gb|ACT47910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylotenera
           mobilis JLW8]
          Length = 107

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTENCI CK TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI  + D
Sbjct: 1   MTYVVTENCIQCKFTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+  A  WP IT +KE+LP A  M+G   K
Sbjct: 61  VPADQQEYIALNARLAQVWPTITARKEALPDAEAMNGAPNK 101


>gi|108762705|ref|YP_631259.1| ferrodoxin, 4Fe-4S [Myxococcus xanthus DK 1622]
 gi|108466585|gb|ABF91770.1| ferrodoxin, 4Fe-4S [Myxococcus xanthus DK 1622]
          Length = 111

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 74/113 (65%), Gaps = 5/113 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV + CI CK+TDCVEVCPV+CFYEG NFL IHPDECIDCG CEP CP  AI P+TE
Sbjct: 1   MAYVVADPCIKCKYTDCVEVCPVNCFYEGANFLVIHPDECIDCGACEPVCPTKAIFPETE 60

Query: 61  PGLELWLK---INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
              E W +   +N++ +T+WPNI  KK +LP A +    K        P PG 
Sbjct: 61  LP-EQWKEYKALNADLSTKWPNIAEKKSALPEAEEFKS-KDGKRSLLDPAPGS 111


>gi|58582544|ref|YP_201560.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624429|ref|YP_451801.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427138|gb|AAW76175.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368369|dbj|BAE69527.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 107

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E +  WP +T ++E LP AA+ DG   K 
Sbjct: 61  VPAGQEGFVALNAELSKVWPVLTVRQEPLPDAAEWDGKPNKL 102


>gi|157804217|ref|YP_001492766.1| ferredoxin [Rickettsia canadensis str. McKiel]
 gi|157785480|gb|ABV73981.1| Ferredoxin [Rickettsia canadensis str. McKiel]
          Length = 114

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 75/106 (70%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGELMLVINPDECIDCGVCIPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P L  W++   ++     W NIT K+ +L  A K    K K+ KY 
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKKRPALTDADKFKDEKDKFNKYM 105


>gi|157964977|ref|YP_001499801.1| ferredoxin [Rickettsia massiliae MTU5]
 gi|157844753|gb|ABV85254.1| Ferredoxin [Rickettsia massiliae MTU5]
          Length = 116

 Score =  119 bits (298), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 7/111 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY  
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKPALPDADKFKDEKDKFNKYIG 110


>gi|91983696|gb|ABE68854.1| FdxA [Pseudomonas sp. K93.2]
 gi|117573334|gb|ABK40843.1| ferredoxin [Pseudomonas sp. K94.38]
          Length = 99

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 72/93 (77%), Gaps = 2/93 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +++N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 IELNAELAEIWPNITEKKDALPDAEEWDGKEGK 93


>gi|117573304|gb|ABK40828.1| ferredoxin [Pseudomonas sp. C6-16]
 gi|117573310|gb|ABK40831.1| ferredoxin [Pseudomonas sp. C6-9]
 gi|117573314|gb|ABK40833.1| ferredoxin [Pseudomonas sp. S7-29]
 gi|117573316|gb|ABK40834.1| ferredoxin [Pseudomonas sp. S7-42]
 gi|117573318|gb|ABK40835.1| ferredoxin [Pseudomonas sp. S7-46]
 gi|117573320|gb|ABK40836.1| ferredoxin [Pseudomonas sp. S7-52]
 gi|117573326|gb|ABK40839.1| ferredoxin [Pseudomonas sp. S8-151]
 gi|117573328|gb|ABK40840.1| ferredoxin [Pseudomonas sp. C6-11]
          Length = 99

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 72/93 (77%), Gaps = 2/93 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +++N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 IELNAELADIWPNITEKKDALPDAEEWDGKEGK 93


>gi|91983692|gb|ABE68852.1| FdxA [Pseudomonas sp. F96.27]
 gi|91983702|gb|ABE68857.1| FdxA [Pseudomonas sp. P97.38]
          Length = 101

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
          +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G E
Sbjct: 1  DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGQE 60

Query: 65 LWLKINSEYATQWPNITTKKESLPSAAKMDG 95
           ++++N+E A  WPNIT KK++LP A + DG
Sbjct: 61 NFIELNAELADIWPNITEKKDALPDAEEWDG 91


>gi|42520002|ref|NP_965917.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99035924|ref|ZP_01314971.1| hypothetical protein Wendoof_01000179 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409739|gb|AAS13851.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 124

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   +L+  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  IKDILELDEELLSSEQKTFKLFYDINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|58584826|ref|YP_198399.1| ferredoxin [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419142|gb|AAW71157.1| Ferredoxin [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 124

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 79/123 (64%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 59  TEPGLEL--------------WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            +  LEL              +  IN EY+ +WPNIT KK+ L +A K    K K   YF
Sbjct: 61  IKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDK-TAYF 119

Query: 105 SPN 107
           + N
Sbjct: 120 NEN 122


>gi|187729714|ref|YP_001837303.1| ferredoxin-like protein [Acidithiobacillus caldus]
 gi|167782099|gb|ACA00170.1| ferredoxin-like protein [Acidithiobacillus caldus]
          Length = 107

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NC+ CK+ DCV+VCPVDCF+EG+NFL I P  CIDCGVCEPECP  AI  D++
Sbjct: 1   MTYVVTDNCVNCKYMDCVDVCPVDCFHEGKNFLVIDPSVCIDCGVCEPECPASAIYKDSD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              E   +L IN + ++ WP I  KK+ LP A K DG+  K
Sbjct: 61  LPDEFVAYLDINKKLSSSWPLIKYKKDELPEAHKWDGIPNK 101


>gi|117573340|gb|ABK40846.1| ferredoxin [Pseudomonas sp. Q86-87]
          Length = 99

 Score =  118 bits (295), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 70/89 (78%), Gaps = 2/89 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDG 95
          +++N+E A  WPNIT KK++LP A + DG
Sbjct: 61 IELNAELADIWPNITEKKDALPDAEEWDG 89


>gi|15839190|ref|NP_299878.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9107823|gb|AAF85398.1|AE004067_5 ferredoxin [Xylella fastidiosa 9a5c]
          Length = 107

 Score =  117 bits (294), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P+ +
Sbjct: 1   MPFVVTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEED 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              E    + +N+E A  WP +T ++E +P AA+ DG   K 
Sbjct: 61  VPTEQKQCIALNAELAKAWPVVTVRREPMPDAAEWDGKPDKL 102


>gi|53803364|ref|YP_114883.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
 gi|53757125|gb|AAU91416.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
          Length = 107

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF+EG NFL I PDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAHAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E +  WP+I+  KE+LP A + +G   K +
Sbjct: 61  LPEGQEQFIQLNAELSKIWPSISEVKEALPDADEWNGKPDKLQ 103


>gi|119476595|ref|ZP_01616905.1| 7-Fe ferredoxin [marine gamma proteobacterium HTCC2143]
 gi|119449851|gb|EAW31087.1| 7-Fe ferredoxin [marine gamma proteobacterium HTCC2143]
          Length = 107

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 2/86 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1  MTFVVGEQCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIYSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKK 84
               ++++++N+E A  WPNIT  K
Sbjct: 61 LPEDQQVFMELNTELAEVWPNITEIK 86


>gi|198283633|ref|YP_002219954.1| hypothetical protein Lferr_1523 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666844|ref|YP_002426259.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248154|gb|ACH83747.1| Protein of unknown function DUF1971 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519057|gb|ACK79643.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 206

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CILCK+TDCV VCPVDCF+EG NFLAI PDECIDC +C  ECPVDAI  D +
Sbjct: 1   MTHVVTEACILCKYTDCVTVCPVDCFHEGPNFLAIDPDECIDCTLCVSECPVDAIFRDVD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E + ++N+  A +WP I  KK +LP A +   V+ K
Sbjct: 61  LPNGMEEYPELNARLARRWPVIIQKKPALPDAEQWRHVRDK 101


>gi|117573292|gb|ABK40822.1| ferredoxin [Pseudomonas sp. C10-186]
 gi|117573294|gb|ABK40823.1| ferredoxin [Pseudomonas sp. C10-189]
 gi|117573296|gb|ABK40824.1| ferredoxin [Pseudomonas sp. C10-190]
 gi|117573302|gb|ABK40827.1| ferredoxin [Pseudomonas sp. C10-205]
          Length = 99

 Score =  117 bits (293), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPTGMENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +++N+E A  WPNIT KK++LP A + DG   K
Sbjct: 61 IELNAELADIWPNITEKKDALPDAEEWDGKTGK 93


>gi|171463171|ref|YP_001797284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192709|gb|ACB43670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 107

 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI   D 
Sbjct: 1   MTYVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCVPECPVNAIYAEDD 60

Query: 60  EPG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
            PG  + ++K+N+E +  W +IT  K +LP A +   VK K ++
Sbjct: 61  VPGDQQSFIKLNAELSPSWTSITKSKAALPDAEEWKDVKNKLDQ 104


>gi|229587193|ref|YP_002845694.1| Ferredoxin [Rickettsia africae ESF-5]
 gi|228022243|gb|ACP53951.1| Ferredoxin [Rickettsia africae ESF-5]
          Length = 116

 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 75/111 (67%), Gaps = 7/111 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+P ECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPAECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY  
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYIG 110


>gi|117573298|gb|ABK40825.1| ferredoxin [Pseudomonas sp. C10-197]
 gi|117573300|gb|ABK40826.1| ferredoxin [Pseudomonas sp. C10-204]
 gi|117573322|gb|ABK40837.1| ferredoxin [Pseudomonas sp. S8-110]
 gi|117573324|gb|ABK40838.1| ferredoxin [Pseudomonas sp. S8-130]
          Length = 99

 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGMENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          + +N+E A  WPNIT KK++LP A + DG + K
Sbjct: 61 IVLNAELADIWPNITEKKDALPDAEEWDGKEGK 93


>gi|58698109|ref|ZP_00373032.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630003|ref|YP_002726794.1| ferredoxin, 4Fe-4S [Wolbachia sp. wRi]
 gi|58535355|gb|EAL59431.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225591984|gb|ACN95003.1| ferredoxin, 4Fe-4S [Wolbachia sp. wRi]
          Length = 124

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 78/123 (63%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 59  TEPGLEL--------------WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            +  LEL              +  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  VKDILELDEELLSSEQKTFKSFYNINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|83647900|ref|YP_436335.1| ferredoxin [Hahella chejuensis KCTC 2396]
 gi|83635943|gb|ABC31910.1| Ferredoxin [Hahella chejuensis KCTC 2396]
          Length = 107

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N E    WPNIT KK++   A    GVK K +
Sbjct: 61  LPEDQKEFIALNEELCRVWPNITEKKDAPADADDWKGVKGKLK 103


>gi|169632883|ref|YP_001706619.1| 7-Fe ferredoxin [Acinetobacter baumannii SDF]
 gi|169796509|ref|YP_001714302.1| 7-Fe ferredoxin [Acinetobacter baumannii AYE]
 gi|184157558|ref|YP_001845897.1| ferredoxin [Acinetobacter baumannii ACICU]
 gi|239503728|ref|ZP_04663038.1| ferredoxin [Acinetobacter baumannii AB900]
 gi|260555572|ref|ZP_05827793.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|301347837|ref|ZP_07228578.1| ferredoxin [Acinetobacter baumannii AB056]
 gi|301511664|ref|ZP_07236901.1| ferredoxin [Acinetobacter baumannii AB058]
 gi|301597645|ref|ZP_07242653.1| ferredoxin [Acinetobacter baumannii AB059]
 gi|332853960|ref|ZP_08435080.1| ferredoxin-1 [Acinetobacter baumannii 6013150]
 gi|332870215|ref|ZP_08439110.1| ferredoxin-1 [Acinetobacter baumannii 6013113]
 gi|332874292|ref|ZP_08442211.1| ferredoxin-1 [Acinetobacter baumannii 6014059]
 gi|169149436|emb|CAM87322.1| 7-Fe ferredoxin [Acinetobacter baumannii AYE]
 gi|169151675|emb|CAP00465.1| 7-Fe ferredoxin [Acinetobacter baumannii]
 gi|183209152|gb|ACC56550.1| Ferredoxin [Acinetobacter baumannii ACICU]
 gi|193076943|gb|ABO11677.2| 7-Fe ferredoxin [Acinetobacter baumannii ATCC 17978]
 gi|260412114|gb|EEX05411.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|332728316|gb|EGJ59697.1| ferredoxin-1 [Acinetobacter baumannii 6013150]
 gi|332732382|gb|EGJ63639.1| ferredoxin-1 [Acinetobacter baumannii 6013113]
 gi|332737517|gb|EGJ68425.1| ferredoxin-1 [Acinetobacter baumannii 6014059]
          Length = 107

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +WPNIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQKWPNITQIGEQPADREEWNGKPDKLQ 103


>gi|160871760|ref|ZP_02061892.1| ferredoxin [Rickettsiella grylli]
 gi|159120559|gb|EDP45897.1| ferredoxin [Rickettsiella grylli]
          Length = 111

 Score =  116 bits (291), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT++VTE CI CK+TDCVEVCPVDCFYEG N L IHPDECIDCG+CEPECPV+AI  + D
Sbjct: 5  MTFLVTEKCIRCKYTDCVEVCPVDCFYEGPNMLVIHPDECIDCGLCEPECPVNAIYVEDD 64

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + +L +N E + +WPNI  +K+  P A
Sbjct: 65 LPDKYKEFLALNKELSKKWPNIVRRKDPPPDA 96


>gi|171059471|ref|YP_001791820.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170776916|gb|ACB35055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 107

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI P+ +
Sbjct: 1   MTHVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAILPEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            P  ++ ++ IN+E + +WP+IT +K +LP A +    K K 
Sbjct: 61  VPADQMKFIAINAELSPKWPSITKRKAALPDADEWKDRKDKL 102


>gi|88705822|ref|ZP_01103531.1| Ferredoxin [Congregibacter litoralis KT71]
 gi|88699893|gb|EAQ97003.1| Ferredoxin [Congregibacter litoralis KT71]
          Length = 107

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 71/97 (73%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1  MTFVVGEDCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
               +++L++N+E A  WP IT  K +   A +  G
Sbjct: 61 LPADQQVFLELNAELAEVWPCITEMKPAPEDAEEWAG 97


>gi|117573312|gb|ABK40832.1| ferredoxin [Pseudomonas sp. P97.39]
 gi|117573330|gb|ABK40841.1| ferredoxin [Pseudomonas sp. F96.26]
 gi|117573336|gb|ABK40844.1| ferredoxin [Pseudomonas sp. P97.1]
 gi|117573338|gb|ABK40845.1| ferredoxin [Pseudomonas sp. P97.27]
          Length = 99

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGQENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDG 95
          +++N+E A  WPNIT KK++LP A + DG
Sbjct: 61 IELNAELADIWPNITEKKDALPDAEEWDG 89


>gi|28199843|ref|NP_780157.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|71275225|ref|ZP_00651512.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Dixon]
 gi|71899554|ref|ZP_00681710.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|71899939|ref|ZP_00682086.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|170731220|ref|YP_001776653.1| ferredoxin [Xylella fastidiosa M12]
 gi|182682594|ref|YP_001830754.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xylella fastidiosa M23]
 gi|28057964|gb|AAO29806.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|71164034|gb|EAO13749.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Dixon]
 gi|71730302|gb|EAO32386.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|71730683|gb|EAO32758.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|167966013|gb|ACA13023.1| ferredoxin [Xylella fastidiosa M12]
 gi|182632704|gb|ACB93480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xylella
           fastidiosa M23]
 gi|307578876|gb|ADN62845.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P+ +
Sbjct: 1   MPFVVTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEED 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              E    + +N+E A  WP +T ++E +P AA+ +G   K 
Sbjct: 61  VPTEQKQCIALNAELAKAWPVVTVRREPMPDAAEWNGKPDKL 102


>gi|120611719|ref|YP_971397.1| 4Fe-4S ferredoxin [Acidovorax citrulli AAC00-1]
 gi|120590183|gb|ABM33623.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
          citrulli AAC00-1]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VV+ENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1  MTHVVSENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
               + ++K+N+E A QW +IT +K SLP A + +G
Sbjct: 61 LPADQQAFIKLNAELAPQWKSITKRKASLPDADEWNG 97


>gi|326317032|ref|YP_004234704.1| ferredoxin, C-terminal protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gi|323373868|gb|ADX46137.1| Ferredoxin, C-terminal protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VV+ENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1  MTHVVSENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
               + ++K+N+E A QW +IT +K SLP A + +G
Sbjct: 61 LPADQQAFIKLNAELAPQWKSITKRKASLPDADEWNG 97


>gi|145588570|ref|YP_001155167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046976|gb|ABP33603.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 107

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI   D 
Sbjct: 1   MTYVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCVPECPVNAIYAEDD 60

Query: 60  EPG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
            PG  + ++K+N+E +  W +IT  K +LP A +   VK K ++
Sbjct: 61  VPGDQQSFIKLNAELSPDWTSITKSKPALPDADEWKDVKNKLDQ 104


>gi|153005139|ref|YP_001379464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028712|gb|ABS26480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 108

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDCG CEP CP  AI P+  
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCGACEPACPTKAIFPEES 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N++    WPNI+ KK+ LP A +   V++K +
Sbjct: 61  LPAKWKEYTQLNADLCKTWPNISEKKDPLPDADQWKDVEEKRQ 103


>gi|192359344|ref|YP_001982818.1| 7-Fe ferredoxin [Cellvibrio japonicus Ueda107]
 gi|190685509|gb|ACE83187.1| 7-Fe ferredoxin [Cellvibrio japonicus Ueda107]
          Length = 107

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECPV AI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPVSAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++L++N+E +  WPNIT  K++   AA  DGV  K +  
Sbjct: 61  LPEDQAVFLELNAELSQVWPNITEIKDAPADAADWDGVPGKLQHL 105


>gi|91783228|ref|YP_558434.1| putative 4Fe-4S ferredoxin [Burkholderia xenovorans LB400]
 gi|91687182|gb|ABE30382.1| Putative 4Fe-4S ferredoxin [Burkholderia xenovorans LB400]
          Length = 107

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCIQCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  ++K+N+E A +WP IT  K  L  A +   VK K+
Sbjct: 61  VPRDQRHFIKLNAELARRWPGITKTKAPLAEADRFKDVKDKF 102


>gi|117573306|gb|ABK40829.1| ferredoxin [Pseudomonas sp. C6-23]
 gi|117573308|gb|ABK40830.1| ferredoxin [Pseudomonas sp. C6-2]
          Length = 99

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 69/93 (74%), Gaps = 2/93 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--W 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   E+  +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPEEMQEF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +++N E A  WPNIT KK+ LP A + DGVK K
Sbjct: 61 IQLNVELAEIWPNITEKKDPLPDAEEWDGVKGK 93


>gi|187924909|ref|YP_001896551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
 gi|187716103|gb|ACD17327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 107

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++++N+E A  WP+IT  K  LP A +   VK+K E
Sbjct: 61  VPGDQQNFIELNAELAKNWPSITKTKAPLPEADEFKDVKEKLE 103


>gi|300112903|ref|YP_003759478.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Nitrosococcus watsonii C-113]
 gi|299538840|gb|ADJ27157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nitrosococcus watsonii C-113]
          Length = 112

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 71/99 (71%), Gaps = 2/99 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + D
Sbjct: 1  MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
               + +L+IN+E A  WP IT  KE    A + D +K
Sbjct: 61 VPKEHQKYLEINAELARSWPVITESKEPPADADQWDRIK 99


>gi|260549538|ref|ZP_05823756.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|293608589|ref|ZP_06690892.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260407331|gb|EEX00806.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|292829162|gb|EFF87524.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQKWPNITQIGDQPADREEWNGKPDKLQ 103


>gi|255319931|ref|ZP_05361131.1| ferredoxin-1 [Acinetobacter radioresistens SK82]
 gi|262379624|ref|ZP_06072780.1| ferredoxin [Acinetobacter radioresistens SH164]
 gi|255302951|gb|EET82168.1| ferredoxin-1 [Acinetobacter radioresistens SK82]
 gi|262299081|gb|EEY86994.1| ferredoxin [Acinetobacter radioresistens SH164]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGEQPADREEWNGKPDKLQ 103


>gi|262369723|ref|ZP_06063051.1| 7-Fe ferredoxin [Acinetobacter johnsonii SH046]
 gi|262315791|gb|EEY96830.1| 7-Fe ferredoxin [Acinetobacter johnsonii SH046]
          Length = 107

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E +  WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQTWPNITQIGDQPADREEWNGKADKLQ 103


>gi|117573332|gb|ABK40842.1| ferredoxin [Pseudomonas sp. K93.52]
          Length = 99

 Score =  115 bits (288), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 2/93 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
          CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1  CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPAGMENF 60

Query: 67 LKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +++N+E A  WPNIT KK+ +P A + DG   K
Sbjct: 61 IELNAELADVWPNITEKKDPMPGAEEWDGKTGK 93


>gi|225677141|ref|ZP_03788140.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590808|gb|EEH12036.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 124

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+ VT+ CI CK+TDC EVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCAEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 59  TEPGLEL--------------WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            +  LEL              +  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  IKDILELDEELLNSEQKIFKSFYNINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|73666649|ref|YP_302665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ehrlichia canis str. Jake]
 gi|72393790|gb|AAZ68067.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Ehrlichia canis str.
           Jake]
          Length = 125

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI PD  
Sbjct: 1   MTHFVTDKCIRCKYTDCVEVCPVDCFYEGANMLVIDPDQCIDCGVCIPECPIDAIVPDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  ++   +IN +++ +W NIT+ K + P A      K K+ KYF
Sbjct: 61  IKDILECSDSELNEEQKNIKKSYEINKKFSKEWKNITSAKTAYPEAESYKYRKDKF-KYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|292492665|ref|YP_003528104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291581260|gb|ADE15717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 112

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + D
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                  +LK+N+E A  WP IT  KE    A + D +K 
Sbjct: 61  LPEEHRNYLKLNAELARNWPVITESKEPPSDADQWDRIKN 100


>gi|262376219|ref|ZP_06069449.1| 7-Fe ferredoxin [Acinetobacter lwoffii SH145]
 gi|262308820|gb|EEY89953.1| 7-Fe ferredoxin [Acinetobacter lwoffii SH145]
          Length = 107

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGDQPADREEWNGKADKLQ 103


>gi|297538391|ref|YP_003674160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylotenera sp. 301]
 gi|297257738|gb|ADI29583.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylotenera
           sp. 301]
          Length = 107

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTENCI CK TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI  + D
Sbjct: 1   MTYVVTENCIQCKFTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+  A  WP IT++K +L  A  M+GV  K +
Sbjct: 61  VPADQQEFIALNARLAELWPVITSRKAALEDAEAMNGVPGKRD 103


>gi|289208208|ref|YP_003460274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288943839|gb|ADC71538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 107

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-DT 59
           M ++V ENCI CK+TDCVEVCPVDCF+EG NFLAI PDECIDC +CEPECP +AI P D 
Sbjct: 1   MAFIVLENCIKCKYTDCVEVCPVDCFHEGPNFLAIDPDECIDCTLCEPECPAEAIVPEDD 60

Query: 60  EPGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            P  +L ++++N+E +  WP IT +K+    A + DGV+ K 
Sbjct: 61  VPEDQLQFIELNAELSRTWPVITARKDPPEDAEEWDGVEGKL 102


>gi|312795504|ref|YP_004028426.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312167279|emb|CBW74282.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 131

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 25  MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 84

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++++N+E A  WP+IT  K  LP A +   VK K +
Sbjct: 85  VPGDQQQFIQLNAELAKDWPSITRTKPPLPDAVEWKDVKDKLK 127


>gi|296135523|ref|YP_003642765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
          intermedia K12]
 gi|295795645|gb|ADG30435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
          intermedia K12]
          Length = 107

 Score =  114 bits (286), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 70/88 (79%), Gaps = 2/88 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTENCI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI  + +
Sbjct: 1  MTFVVTENCIRCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIYAEED 60

Query: 61 -PG-LELWLKINSEYATQWPNITTKKES 86
           PG  + ++K+N+E + QWP+IT +K +
Sbjct: 61 VPGDQQAFIKLNAELSRQWPSITKRKAA 88


>gi|294339652|emb|CAZ88012.1| Ferredoxin [Thiomonas sp. 3As]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 70/88 (79%), Gaps = 2/88 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTENCI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI  + +
Sbjct: 1  MTFVVTENCIRCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIYAEED 60

Query: 61 -PG-LELWLKINSEYATQWPNITTKKES 86
           PG  + ++K+N+E + QWP+IT +K +
Sbjct: 61 VPGDQQAFIKLNAELSRQWPSITKRKAA 88


>gi|124266690|ref|YP_001020694.1| ferredoxin [Methylibium petroleiphilum PM1]
 gi|124259465|gb|ABM94459.1| ferredoxin [Methylibium petroleiphilum PM1]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 71/92 (77%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI P+ +
Sbjct: 1  MTHVVTEACIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAILPEED 60

Query: 61 -PG-LELWLKINSEYATQWPNITTKKESLPSA 90
           PG  + ++ IN E + +WP+IT +K +LP A
Sbjct: 61 VPGDQQQFIAINVELSKKWPSITKRKTALPDA 92


>gi|50084667|ref|YP_046177.1| 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|262278522|ref|ZP_06056307.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|299770827|ref|YP_003732853.1| ferredoxin [Acinetobacter sp. DR1]
 gi|15217085|gb|AAK92496.1|AF400582_5 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|49530643|emb|CAG68355.1| 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|262258873|gb|EEY77606.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|298700915|gb|ADI91480.1| ferredoxin [Acinetobacter sp. DR1]
          Length = 107

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGDQPADREEWNGKPDKLQ 103


>gi|77163722|ref|YP_342247.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosococcus oceani ATCC
           19707]
 gi|76882036|gb|ABA56717.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosococcus
           oceani ATCC 19707]
          Length = 112

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + D
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                + +L IN+E A  WP IT  KE    A + D +K 
Sbjct: 61  VPKEHQKYLGINAELAKSWPVITESKEPPADADQWDRIKN 100


>gi|153872043|ref|ZP_02001049.1| 4Fe-4S ferredoxin, iron-sulfur binding [Beggiatoa sp. PS]
 gi|152071489|gb|EDN68949.1| 4Fe-4S ferredoxin, iron-sulfur binding [Beggiatoa sp. PS]
          Length = 109

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVTENCILCK+TDC+EVCPVDCF+EG NFL I P+ECIDC +CEPECP  AI  + D
Sbjct: 1   MAFVVTENCILCKYTDCIEVCPVDCFHEGPNFLVIDPEECIDCTLCEPECPAKAIYSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +++IN++ + +WP IT +K+  P A + DG   K +
Sbjct: 61  LPSEQQHFVQINADLSQKWPVITERKDPPPDAEQWDGKPDKLQ 103


>gi|34497002|ref|NP_901217.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34102859|gb|AAQ59223.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
          Length = 112

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 8/106 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---- 56
           MTYVV  +CI CKH+DCV+VCP D F+EG N LAI+PD+CIDCG+C PECP+DAI+    
Sbjct: 1   MTYVVLSDCIGCKHSDCVDVCPTDSFHEGPNMLAINPDDCIDCGLCVPECPIDAIREDKA 60

Query: 57  -PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  E G+   + +N+E A +WPNIT  K +LP A    G   K +
Sbjct: 61  VPSHEHGM---IALNAELAQRWPNITKSKPALPEAEAWRGRPDKLQ 103


>gi|56417282|ref|YP_154356.1| ferredoxin II [Anaplasma marginale str. St. Maries]
 gi|222475646|ref|YP_002564063.1| ferredoxin II (fdxA) [Anaplasma marginale str. Florida]
 gi|254995448|ref|ZP_05277638.1| ferredoxin II (fdxA) [Anaplasma marginale str. Mississippi]
 gi|255003639|ref|ZP_05278603.1| ferredoxin II (fdxA) [Anaplasma marginale str. Puerto Rico]
 gi|255004765|ref|ZP_05279566.1| ferredoxin II (fdxA) [Anaplasma marginale str. Virginia]
 gi|56388514|gb|AAV87101.1| ferredoxin II [Anaplasma marginale str. St. Maries]
 gi|222419784|gb|ACM49807.1| ferredoxin II (fdxA) [Anaplasma marginale str. Florida]
          Length = 123

 Score =  114 bits (284), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+ VT+ CI CK+TDCVEVCPVDCFYEGEN L I PD+CIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGENMLVIDPDQCIDCGVCVPECPVDAIVSDEF 60

Query: 59  --------------TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + KIN+E++ +W NIT  K  +  A +      K  +YF
Sbjct: 61  IEDIISCDDSALNERQQSLKAFHKINAEFSKKWKNITASKPPMEEAERYKDDLNK-AQYF 119

Query: 105 SPN 107
             N
Sbjct: 120 KEN 122


>gi|198282163|ref|YP_002218484.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666462|ref|YP_002424528.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246684|gb|ACH82277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518675|gb|ACK79261.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 108

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDC EVCPV+CF+EG NFL I P ECIDC  C PECP DAI  D E
Sbjct: 1   MTYVVTENCIQCKYTDCAEVCPVECFHEGPNFLVIDPVECIDCAACVPECPADAIFADDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
             P    +  IN+E A  WP I  KK +LP A   +G   K
Sbjct: 61  VPPDQRDFTAINAELARDWPVILRKKAALPDAETWNGKGDK 101


>gi|269958328|ref|YP_003328115.1| ferredoxin [Anaplasma centrale str. Israel]
 gi|269848157|gb|ACZ48801.1| ferredoxin [Anaplasma centrale str. Israel]
          Length = 123

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+ VT+ CI CK+TDCVEVCPVDCFYEGEN L I PD+CIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGENMLVIDPDQCIDCGVCVPECPVDAIVSDEF 60

Query: 59  --------------TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + KIN+E++ +W NIT  K  +  A +      K  +YF
Sbjct: 61  IEDIISCDDSTLNERQQSLKAFHKINAEFSKKWKNITASKPPMEEAERYKDDLNK-AQYF 119

Query: 105 SPN 107
             N
Sbjct: 120 KEN 122


>gi|34498889|ref|NP_903104.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104740|gb|AAQ61097.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
          Length = 107

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVT+ CI CK+TDCVEVCPVDCF EG NFLAI PDECIDC +C PECPV AI  + D
Sbjct: 1   MAYVVTDACIKCKYTDCVEVCPVDCFREGPNFLAIDPDECIDCSLCVPECPVGAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G E ++ +N+E A  WP+I  + + LP  A    VK K
Sbjct: 61  VPKGQEAFIALNAELAKNWPSIVERIDPLPDHADWADVKDK 101


>gi|91784742|ref|YP_559948.1| putative ferredoxin [Burkholderia xenovorans LB400]
 gi|296158268|ref|ZP_06841100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
 gi|91688696|gb|ABE31896.1| Putative ferredoxin [Burkholderia xenovorans LB400]
 gi|295891604|gb|EFG71390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
          Length = 107

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++++N++ A  WP+IT  K  LP A +   VK K E
Sbjct: 61  VPGDQQNFIELNADLAKSWPSITKTKAPLPEADEFKDVKDKLE 103


>gi|88810236|ref|ZP_01125493.1| ferredoxin, 4Fe-4S [Nitrococcus mobilis Nb-231]
 gi|88791866|gb|EAR22976.1| ferredoxin, 4Fe-4S [Nitrococcus mobilis Nb-231]
          Length = 107

 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFLAI P+ECIDC +CEPECP +AI  + D
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLAIDPEECIDCTLCEPECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N+E A +WP IT  K++   A + DG   K +
Sbjct: 61  LPEEQHHFLELNAELAQKWPVITEMKDAPKDAEEWDGKPGKLQ 103


>gi|53719819|ref|YP_108805.1| ferredoxin I [Burkholderia pseudomallei K96243]
 gi|53724135|ref|YP_103250.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76809614|ref|YP_334029.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121598984|ref|YP_993430.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124386308|ref|YP_001029137.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|134277295|ref|ZP_01764010.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|167824830|ref|ZP_02456301.1| ferredoxin [Burkholderia pseudomallei 9]
 gi|226198916|ref|ZP_03794479.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|238562467|ref|ZP_00440400.2| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|251766955|ref|ZP_02265481.2| ferredoxin [Burkholderia mallei PRL-20]
 gi|254178196|ref|ZP_04884851.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|254191489|ref|ZP_04897993.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|254198288|ref|ZP_04904710.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|254200199|ref|ZP_04906565.1| ferredoxin [Burkholderia mallei FMH]
 gi|254209279|ref|ZP_04915625.1| ferredoxin [Burkholderia mallei JHU]
 gi|254259347|ref|ZP_04950401.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|254297156|ref|ZP_04964609.1| putative ferredoxin [Burkholderia pseudomallei 406e]
 gi|254358050|ref|ZP_04974323.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|262193288|ref|YP_001080939.2| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|52210233|emb|CAH36212.1| ferredoxin I [Burkholderia pseudomallei K96243]
 gi|52427558|gb|AAU48151.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76579067|gb|ABA48542.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121227794|gb|ABM50312.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124294328|gb|ABN03597.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|134250945|gb|EBA51024.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|147749795|gb|EDK56869.1| ferredoxin [Burkholderia mallei FMH]
 gi|147750052|gb|EDK57123.1| ferredoxin [Burkholderia mallei JHU]
 gi|148027177|gb|EDK85198.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|157807005|gb|EDO84175.1| putative ferredoxin [Burkholderia pseudomallei 406e]
 gi|157939161|gb|EDO94831.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|160699235|gb|EDP89205.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|169655029|gb|EDS87722.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|225929016|gb|EEH25040.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|238522582|gb|EEP86025.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|243064296|gb|EES46482.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|254218036|gb|EET07420.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|261835063|gb|ABO05671.2| ferredoxin [Burkholderia mallei NCTC 10247]
          Length = 112

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   E
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|88813310|ref|ZP_01128549.1| ferrodoxin [Nitrococcus mobilis Nb-231]
 gi|88789482|gb|EAR20610.1| ferrodoxin [Nitrococcus mobilis Nb-231]
          Length = 108

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%), Gaps = 5/104 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +C PECPV+AI  D  
Sbjct: 1   MTYVVTERCIRCKYTDCVEVCPVDCFHEGRNFLVIDPDECIDCALCVPECPVEAIYADDR 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
              G E + ++N++ A  WP IT +K   P+ A  +  ++  +K
Sbjct: 61  LPEGQERFFELNAQLARAWPVITRRK---PAPADAEEWREATDK 101


>gi|332527731|ref|ZP_08403772.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332112129|gb|EGJ12105.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 107

 Score =  113 bits (283), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ++CI CK+TDCV+VCPVDCF EG NFL I P+ECIDC VC PECP +AI P+ +
Sbjct: 1   MTHVVLDSCIRCKYTDCVDVCPVDCFREGPNFLVIDPEECIDCAVCIPECPANAILPEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  +L ++++N+E A  WP+IT +K SLP A +    K K +
Sbjct: 61  VPADQLQFIQLNAELAKTWPSITKRKASLPDADEWKDRKNKLQ 103


>gi|57238754|ref|YP_179890.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58578675|ref|YP_196887.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58616738|ref|YP_195937.1| ferredoxin [Ehrlichia ruminantium str. Gardel]
 gi|57160833|emb|CAH57731.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58416350|emb|CAI27463.1| Ferredoxin [Ehrlichia ruminantium str. Gardel]
 gi|58417301|emb|CAI26505.1| Ferredoxin [Ehrlichia ruminantium str. Welgevonden]
          Length = 125

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ +T+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI  D  
Sbjct: 1   MTHFITDRCIKCKYTDCVEVCPVDCFYEGPNMLVIDPDQCIDCGVCIPECPIDAIIADDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + + +IN E++ +W NIT++K  LP A      K K+  YF
Sbjct: 61  IKDILESDNNVLNDEQKSFKKFYEINREFSKKWENITSRKSPLPEAESYKYKKDKF-IYF 119

Query: 105 SPN 107
           + N
Sbjct: 120 NEN 122


>gi|118594760|ref|ZP_01552107.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Methylophilales bacterium HTCC2181]
 gi|118440538|gb|EAV47165.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Methylophilales bacterium HTCC2181]
          Length = 108

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFLAI P+ECIDC +C  ECPV+AI  + D
Sbjct: 1   MTYVVTESCIQCKYTDCVDVCPVDCFVEGPNFLAIDPEECIDCTLCVAECPVEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +++IN++ A  WP IT KK++LP A    G   K E
Sbjct: 61  VPEDQQEFIEINAKLAKVWPIITAKKDALPDADAFAGQANKKE 103


>gi|126441756|ref|YP_001059528.1| putative ferredoxin [Burkholderia pseudomallei 668]
 gi|217425596|ref|ZP_03457088.1| putative ferredoxin [Burkholderia pseudomallei 576]
 gi|254184452|ref|ZP_04891042.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|126221249|gb|ABN84755.1| putative ferredoxin [Burkholderia pseudomallei 668]
 gi|184214983|gb|EDU12026.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|217391373|gb|EEC31403.1| putative ferredoxin [Burkholderia pseudomallei 576]
          Length = 112

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   E
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|294341325|emb|CAZ89740.1| ferredoxin [Thiomonas sp. 3As]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI  + D
Sbjct: 1   MTFVVTENCIKCKFTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E + +WP+IT +K + P   + +G   K +
Sbjct: 61  VPGDQQAFIALNAELSRRWPSITKRKPAPPDGEEWNGKPGKLQ 103


>gi|307730560|ref|YP_003907784.1| putative ferredoxin [Burkholderia sp. CCGE1003]
 gi|307585095|gb|ADN58493.1| putative ferredoxin [Burkholderia sp. CCGE1003]
          Length = 107

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + ++++N++ A  WP+IT  K  LP A +   VK+K 
Sbjct: 61  VPGDQQNFIELNADLAKSWPSITKTKAPLPEADEFKDVKEKL 102


>gi|170696356|ref|ZP_02887486.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           graminis C4D1M]
 gi|323526893|ref|YP_004229046.1| putative ferredoxin [Burkholderia sp. CCGE1001]
 gi|170138762|gb|EDT06960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           graminis C4D1M]
 gi|323383895|gb|ADX55986.1| putative ferredoxin [Burkholderia sp. CCGE1001]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + ++++N++ A  WP+IT  K  LP A +   VK+K 
Sbjct: 61  VPGDQQNFIELNADLAKNWPSITKTKAPLPEADEFKDVKEKL 102


>gi|17545833|ref|NP_519235.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17428127|emb|CAD14816.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 108

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 73/107 (68%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + W+ IN+E A   WP+IT  K  LP A +   VK K E+Y 
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKSPLPDAEEWKDVKDK-EQYL 106


>gi|89902899|ref|YP_525370.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89347636|gb|ABD71839.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCV+VCPVD F EG NFLAI PDECIDC VC PECPV+AI  + D
Sbjct: 1   MTFVVTESCISCKYTDCVDVCPVDAFREGPNFLAIDPDECIDCAVCVPECPVNAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+E A +W  IT  K +LP A K   V  K
Sbjct: 61  VPADQQDFIALNAELAPKWKTITRTKAALPDADKWASVAAK 101


>gi|209521147|ref|ZP_03269874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. H160]
 gi|295677210|ref|YP_003605734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. CCGE1002]
 gi|209498422|gb|EDZ98550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. H160]
 gi|295437053|gb|ADG16223.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. CCGE1002]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + ++ +N++ A  WP+IT  K  LP A +   VK+K 
Sbjct: 61  VPGDQQDFIALNADLAKAWPSITKTKAPLPEAEEFKDVKEKL 102


>gi|91776028|ref|YP_545784.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus flagellatus
           KT]
 gi|91710015|gb|ABE49943.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
           flagellatus KT]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI  + D
Sbjct: 1   MAYVVTENCIQCKYTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++++N+  A  WP+IT +K  LP A   +GV  K
Sbjct: 61  VPEDQQEFIELNARLAQIWPSITARKAPLPDADANNGVPGK 101


>gi|300691906|ref|YP_003752901.1| ferredoxin (fdxA) [Ralstonia solanacearum PSI07]
 gi|299078966|emb|CBJ51626.1| Ferredoxin (fdxA) [Ralstonia solanacearum PSI07]
          Length = 108

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + W+ IN+E A + WP+IT  K  LP A +   VK K E+Y 
Sbjct: 61  VPADQQKWIAINAELAQSGWPSITKTKSPLPDAEEWKDVKDK-EQYL 106


>gi|186475572|ref|YP_001857042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phymatum STM815]
 gi|184192031|gb|ACC69996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phymatum STM815]
          Length = 107

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K  LP A     VK+K 
Sbjct: 61  VPGDQQHFTALNAELAKAWPSITKTKSPLPEADDFKDVKEKL 102


>gi|300704516|ref|YP_003746119.1| ferredoxin (fdxa) [Ralstonia solanacearum CFBP2957]
 gi|299072180|emb|CBJ43512.1| Ferredoxin (fdxA) [Ralstonia solanacearum CFBP2957]
          Length = 108

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 73/107 (68%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + W+ IN+E A   WP+IT  K  LP A +   VK K E+Y 
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKSPLPEADQWKDVKDK-EQYL 106


>gi|241662657|ref|YP_002981017.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|309781213|ref|ZP_07675950.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
 gi|240864684|gb|ACS62345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
 gi|308920034|gb|EFP65694.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
          Length = 109

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 73/108 (67%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + W+ IN+E A   WP+IT  K+ LP A     VK K E+Y  
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKQPLPDADDWKDVKDK-EQYLD 107


>gi|224588329|gb|ACN58953.1| ferredoxin [uncultured bacterium BLR10]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF +G NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCISCRYTDCVDVCPVDCFRQGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++KIN + A  WP+IT     LP A +   VK+K  
Sbjct: 61  VPGDQQQFIKINVDLARNWPSITKTVSPLPEADQFKDVKEKLH 103


>gi|221134033|ref|ZP_03560338.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola sp.
           HTCC2999]
          Length = 108

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +C PECP DAI  D  
Sbjct: 1   MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCELCVPECPADAIVQDEK 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
             P    +L++N+E A QWPNI   K +   A K +GV  K
Sbjct: 61  ISPDQAQFLELNAELAKQWPNINEMKPAPADADKWNGVANK 101


>gi|49080100|gb|AAT49971.1| PA2715 [synthetic construct]
          Length = 113

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 4/88 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI+ + E
Sbjct: 1  MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDE 60

Query: 61 P--GLELWLKINSEYATQ--WPNITTKK 84
             G   ++ +N E A    W  IT KK
Sbjct: 61 VPLGQRQFIALNGELAAHPNWTQITRKK 88


>gi|15597911|ref|NP_251405.1| ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|107102238|ref|ZP_01366156.1| hypothetical protein PaerPA_01003290 [Pseudomonas aeruginosa
          PACS2]
 gi|116050700|ref|YP_790480.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891124|ref|YP_002439990.1| putative ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|254235694|ref|ZP_04929017.1| hypothetical protein PACG_01630 [Pseudomonas aeruginosa C3719]
 gi|254241140|ref|ZP_04934462.1| hypothetical protein PA2G_01829 [Pseudomonas aeruginosa 2192]
 gi|296388818|ref|ZP_06878293.1| putative ferredoxin [Pseudomonas aeruginosa PAb1]
 gi|313107772|ref|ZP_07793951.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
 gi|9948790|gb|AAG06103.1|AE004699_8 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|115585921|gb|ABJ11936.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167625|gb|EAZ53136.1| hypothetical protein PACG_01630 [Pseudomonas aeruginosa C3719]
 gi|126194518|gb|EAZ58581.1| hypothetical protein PA2G_01829 [Pseudomonas aeruginosa 2192]
 gi|218771349|emb|CAW27116.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|310880453|gb|EFQ39047.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
          Length = 112

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 4/88 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI+ + E
Sbjct: 1  MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDE 60

Query: 61 P--GLELWLKINSEYATQ--WPNITTKK 84
             G   ++ +N E A    W  IT KK
Sbjct: 61 VPLGQRQFIALNGELAAHPNWTQITRKK 88


>gi|167627085|ref|YP_001677585.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|241667647|ref|ZP_04755225.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876192|ref|ZP_05248902.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|167597086|gb|ABZ87084.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254842213|gb|EET20627.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 107

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 68/106 (64%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPVDAIK   D
Sbjct: 1   MPFVVTENCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVDAIKSSDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                E  L +N E A+ WPNI  K +    A     V  K  KY 
Sbjct: 61  LTESQEQMLDLNRELASIWPNIVEKCDPCEDADNWASVPDKL-KYL 105


>gi|149926235|ref|ZP_01914497.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149825053|gb|EDM84265.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI  + D
Sbjct: 1   MTHVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E A  WP+IT  K  LP A     VK K +
Sbjct: 61  VPADQVKFIDMNVELAKDWPSITRMKAHLPDADDWKDVKDKLQ 103


>gi|187928049|ref|YP_001898536.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187724939|gb|ACD26104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
          Length = 109

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 72/108 (66%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                + W+ IN E A   WP+IT  K+ LP A     VK K E+Y  
Sbjct: 61  VPADQQKWIAINVELAQAGWPSITKTKQPLPDADDWKDVKDK-EQYLD 107


>gi|46205236|ref|ZP_00209759.1| COG1146: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 92

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 56/64 (87%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          +NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE  LE W
Sbjct: 1  DNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTEGNLESW 60

Query: 67 LKIN 70
          LK+N
Sbjct: 61 LKLN 64


>gi|157376399|ref|YP_001474999.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318773|gb|ABV37871.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 107

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVT+NCI CK+TDCV VCPVD F+EG NFLAI+P+ CIDC +C PEC   AI  + D
Sbjct: 1   MAFVVTDNCIRCKYTDCVAVCPVDAFHEGPNFLAINPEVCIDCDLCVPECAAQAIFQEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
              G+E +L++N+E A  WP IT  KE+   A + DGVK K E   
Sbjct: 61  LPEGMEQYLELNAELAQIWPVITEVKEAPADAEEWDGVKNKREHLI 106


>gi|88606918|ref|YP_504664.1| ferredoxin [Anaplasma phagocytophilum HZ]
 gi|88597981|gb|ABD43451.1| ferredoxin [Anaplasma phagocytophilum HZ]
          Length = 126

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP DAI     
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGNNMLVIDPDQCIDCGVCVPECPADAIVSDEF 60

Query: 58  -------------DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                        D +  L+ + KIN +++ +W NIT+ +  L  A     +  KY+ +F
Sbjct: 61  IEDVLASDDSALNDEQKMLKTFYKINEDFSKKWKNITSAQPHLEDADTYKSMAGKYQ-FF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|32470342|ref|NP_863589.1| ferredoxin [Acidithiobacillus ferrooxidans]
 gi|1657802|gb|AAC80173.1| ferredoxin [Acidithiobacillus ferrooxidans]
          Length = 122

 Score =  111 bits (277), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTE CI CK+TDCV VCPVDCF+EG NFLAI PDECIDC +C PECPVDAI  D +
Sbjct: 1  MTHVVTEACIRCKYTDCVTVCPVDCFHEGPNFLAIDPDECIDCTLCVPECPVDAIFRDVD 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
              +E + ++N+  A +WP I  KK +LP A +
Sbjct: 61 LPDAVEKYPELNARLARRWPVIIQKKPALPDAEQ 94


>gi|237747779|ref|ZP_04578259.1| ferredoxin [Oxalobacter formigenes OXCC13]
 gi|229379141|gb|EEO29232.1| ferredoxin [Oxalobacter formigenes OXCC13]
          Length = 107

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVT+ CILCK+TDCV+VCPVDCF+EG N L I+P+ECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVTDACILCKYTDCVDVCPVDCFHEGPNTLVINPNECIDCAVCVPECPAEAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N+E + +WP IT  K+ +P A K   VK K     
Sbjct: 61  VPENQQEFIALNAELSGKWPTITRSKDPMPDADKWKDVKDKLRHLI 106


>gi|255021900|ref|ZP_05293910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968724|gb|EET26276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus caldus ATCC 51756]
          Length = 206

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCV VCPVDCF+EG NFL I P ECIDC +C  ECPVDAI  D +
Sbjct: 1   MTHVVTESCIQCKYTDCVTVCPVDCFHEGPNFLVIDPCECIDCTLCVAECPVDAIFRDVD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +L++N++ A  WP I  KK +LP A +   V  K E
Sbjct: 61  MPDGSEGYLELNAQLAQIWPVIIQKKAALPEAERWRHVMPKRE 103


>gi|237745589|ref|ZP_04576069.1| ferredoxin-1 [Oxalobacter formigenes HOxBLS]
 gi|229376940|gb|EEO27031.1| ferredoxin-1 [Oxalobacter formigenes HOxBLS]
          Length = 107

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 72/101 (71%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVT+ C+LCK+TDCV+VCPVDCF+EG N L I+P+ECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVTDACVLCKYTDCVDVCPVDCFHEGPNTLVINPNECIDCAVCVPECPSEAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+E + +WP IT  K+ LP A K   VK K
Sbjct: 61  VPADQQEYIALNAELSRKWPTITRSKDPLPDADKWKDVKNK 101


>gi|257094884|ref|YP_003168525.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047408|gb|ACV36596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 107

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 72/109 (66%), Gaps = 9/109 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----- 55
           M YVVTE+CI CK TDCV+VCPVDCF+EG NFL I PDECIDC +C PECP +AI     
Sbjct: 1   MAYVVTESCIKCKFTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCVPECPAEAIFAEDD 60

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            PDT+     ++ +N+E A  WP I  +K+ LP A + +G   K  KY 
Sbjct: 61  VPDTQRA---FIALNAELAKAWPTIVERKDPLPDADEWNGRADKL-KYL 105


>gi|68171341|ref|ZP_00544738.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658543|ref|YP_506870.1| ferredoxin A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999239|gb|EAM85892.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600000|gb|ABD45469.1| ferredoxin A [Ehrlichia chaffeensis str. Arkansas]
          Length = 125

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ +T+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI PD  
Sbjct: 1   MTHFITDRCIRCKYTDCVEVCPVDCFYEGANMLVIDPDQCIDCGVCVPECPIDAIVPDDF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + +IN +++ +W NIT+ K     A      K K+  YF
Sbjct: 61  IRDVLECNDSALNEEQKNLKKFYEINKKFSKEWNNITSAKPPYSDAESHKYTKNKF-IYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|329910055|ref|ZP_08275214.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546280|gb|EGF31309.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 107

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCIQCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + ++K+N + +  WP+IT  K +LP A +   ++ K 
Sbjct: 61  VPADQQQFIKLNIDLSRGWPSITKTKAALPEADEFKDMQAKL 102


>gi|253999231|ref|YP_003051294.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylovorus sp. SIP3-4]
 gi|313201319|ref|YP_004039977.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylovorus sp. MP688]
 gi|253985910|gb|ACT50767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylovorus
           sp. SIP3-4]
 gi|312440635|gb|ADQ84741.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylovorus
           sp. MP688]
          Length = 107

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI  + D
Sbjct: 1   MAYVVTENCIQCKYTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+  +  WP IT +K+ LP A   +G   K +
Sbjct: 61  VPADQQEFIALNARLSAIWPTITGRKDPLPDADSNNGKAGKRD 103


>gi|121594158|ref|YP_986054.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222111124|ref|YP_002553388.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120606238|gb|ABM41978.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221730568|gb|ACM33388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 107

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            P  +L ++KIN+E   ++ +IT +K +LP A   +G   K ++ 
Sbjct: 61  LPSDQLAFIKINAELTPKFKSITKRKAALPDADDWNGKPGKLDQL 105


>gi|152987732|ref|YP_001349347.1| putative ferredoxin [Pseudomonas aeruginosa PA7]
 gi|150962890|gb|ABR84915.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 112

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 63/88 (71%), Gaps = 4/88 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHP+ECIDC +CEPECPV AI+ + E
Sbjct: 1  MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPEECIDCALCEPECPVAAIRAEDE 60

Query: 61 P--GLELWLKINSEYATQ--WPNITTKK 84
             G   ++ +N E A    W  IT KK
Sbjct: 61 VPLGQRQFIGLNGELAAHPNWTRITRKK 88


>gi|126454614|ref|YP_001066809.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|167911570|ref|ZP_02498661.1| putative ferredoxin [Burkholderia pseudomallei 112]
 gi|167919580|ref|ZP_02506671.1| putative ferredoxin [Burkholderia pseudomallei BCC215]
 gi|242317545|ref|ZP_04816561.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|126228256|gb|ABN91796.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|242140784|gb|EES27186.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
          Length = 112

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   E
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|29653919|ref|NP_819611.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|153208803|ref|ZP_01947030.1| ferrodoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154706253|ref|YP_001424826.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161829743|ref|YP_001596509.1| ferrodoxin [Coxiella burnetii RSA 331]
 gi|165919089|ref|ZP_02219175.1| ferrodoxin [Coxiella burnetii RSA 334]
 gi|212212928|ref|YP_002303864.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212218799|ref|YP_002305586.1| ferredoxin [Coxiella burnetii CbuK_Q154]
 gi|29541182|gb|AAO90125.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|120575709|gb|EAX32333.1| ferrodoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154355539|gb|ABS77001.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161761610|gb|ABX77252.1| ferrodoxin [Coxiella burnetii RSA 331]
 gi|165917223|gb|EDR35827.1| ferrodoxin [Coxiella burnetii RSA 334]
 gi|212011338|gb|ACJ18719.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212013061|gb|ACJ20441.1| ferredoxin [Coxiella burnetii CbuK_Q154]
          Length = 111

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VV +NCI CK+TDCVEVCPVDCF EG N L I PDECIDC +C PECPVDAI  + D
Sbjct: 1   MTFVVIDNCIRCKYTDCVEVCPVDCFREGPNMLVIDPDECIDCNLCVPECPVDAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N++ A +WP IT KKE+ P A     V  K +
Sbjct: 61  LPEEKHAFLEMNADLAKRWPLITAKKEAPPDADDWTEVPDKLQ 103


>gi|82701854|ref|YP_411420.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosospira multiformis
           ATCC 25196]
 gi|82409919|gb|ABB74028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 107

 Score =  110 bits (274), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 72/104 (69%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI   D 
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYSEDD 60

Query: 60  EPGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
            PG +  ++ +N+E +  W  I  KK++LP A     V +K EK
Sbjct: 61  VPGTQQHFIALNAELSKSWKPIIEKKDALPDADDWAKVTEKLEK 104


>gi|222102197|ref|YP_002546787.1| hypothetical protein Arad_12331 [Agrobacterium radiobacter K84]
 gi|221728314|gb|ACM31323.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 107

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK  DCVE CPV+CF+EG NFL I+P ECIDCGVCEP CP +AI P  E
Sbjct: 1   MTFVVTENCIKCKFQDCVEACPVNCFHEGPNFLVINPSECIDCGVCEPVCPAEAIYPLEE 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
             +E   +  +NSE A +WP IT K      A+  DG + K 
Sbjct: 61  LPVEQAAFAALNSELAAEWPVITIKGPPPADASIWDGKRGKL 102


>gi|160900089|ref|YP_001565671.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160365673|gb|ABX37286.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 109

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 76/107 (71%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 61  -PGLEL-WLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            P  +L ++K+N+E + +  W +IT +K SLP A   +G   K ++ 
Sbjct: 61  VPADQLAFIKLNAELSLEKGWKSITKRKASLPDADDWNGKPGKLDQL 107


>gi|187477594|ref|YP_785618.1| ferredoxin [Bordetella avium 197N]
 gi|115422180|emb|CAJ48704.1| ferredoxin [Bordetella avium 197N]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E + ++ +I+  K+ LP A + +GV+ K +
Sbjct: 61  VPQDQMKFIALNAELSAEFASISRAKKPLPDADEWNGVQDKLQ 103


>gi|237812865|ref|YP_002897316.1| ferredoxin-1 [Burkholderia pseudomallei MSHR346]
 gi|237506519|gb|ACQ98837.1| ferredoxin-1 [Burkholderia pseudomallei MSHR346]
          Length = 112

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   E
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|327481594|gb|AEA84904.1| ferredoxin, 4Fe-4S [Pseudomonas stutzeri DSM 4166]
          Length = 107

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 64/92 (69%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+TDCVEVCP DCF+EG NFL I+P+ CIDC +C PECP DAI  D  
Sbjct: 1  MTYVVTENCIRCKYTDCVEVCPADCFHEGPNFLVINPETCIDCSLCAPECPADAIFADNA 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSA 90
             G + +L++N+E A  WP IT     L  A
Sbjct: 61 LPEGQQHFLELNAELAEVWPVITQSASPLAEA 92


>gi|226951441|ref|ZP_03821905.1| 7-Fe ferredoxin [Acinetobacter sp. ATCC 27244]
 gi|262373026|ref|ZP_06066305.1| ferredoxin [Acinetobacter junii SH205]
 gi|294650963|ref|ZP_06728304.1| ferredoxin 1 [Acinetobacter haemolyticus ATCC 19194]
 gi|226837808|gb|EEH70191.1| 7-Fe ferredoxin [Acinetobacter sp. ATCC 27244]
 gi|262313051|gb|EEY94136.1| ferredoxin [Acinetobacter junii SH205]
 gi|292823144|gb|EFF82006.1| ferredoxin 1 [Acinetobacter haemolyticus ATCC 19194]
          Length = 109

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWP--NITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +W   NIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSEKWAGNNITQIGEQPADREEWNGKPNKLQ 105


>gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas arsenicoxydans]
 gi|133737950|emb|CAL60995.1| Ferredoxin-1 (Ferredoxin I) (FdI) [Herminiimonas arsenicoxydans]
          Length = 107

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVT++C+LC++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI  + D
Sbjct: 1  MTHVVTDSCVLCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + ++K+N E +  WP+IT  K  LP A
Sbjct: 61 VPADQQHYIKLNVELSRNWPSITKTKAPLPEA 92


>gi|218507913|ref|ZP_03505791.1| ferredoxin III protein [Rhizobium etli Brasil 5]
          Length = 59

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPE P +AIKPDT
Sbjct: 1  MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPESPAEAIKPDT 59


>gi|119897322|ref|YP_932535.1| ferredoxin [Azoarcus sp. BH72]
 gi|119669735|emb|CAL93648.1| probable ferredoxin [Azoarcus sp. BH72]
          Length = 107

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTE+CI CK+TDCV+VCPVDCF EGENFL I P+ECIDC +C  ECPV+AI  + D
Sbjct: 1   MAYVVTESCIRCKYTDCVDVCPVDCFREGENFLVIDPEECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+E A  W  I  +KE LP A +   VK K
Sbjct: 61  VPADQQQFIALNAELARTWKPIVERKEPLPDAEQWAKVKGK 101


>gi|91983688|gb|ABE68850.1| FdxA [Pseudomonas sp. Q37-87]
          Length = 92

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 65/86 (75%), Gaps = 2/86 (2%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEY 73
          DCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E ++++N+E 
Sbjct: 1  DCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENFIELNAEL 60

Query: 74 ATQWPNITTKKESLPSAAKMDGVKQK 99
          A  WPNIT KK++LP A + DG   K
Sbjct: 61 ADIWPNITEKKDALPDAEEWDGKTGK 86


>gi|91789908|ref|YP_550860.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91699133|gb|ABE45962.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 109

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 5/109 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+ CI CK+TDCV+VCPVDCF EG +FL I PDECIDC VC PECPV+AI  DT+
Sbjct: 1   MTHVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTD 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
            PG  + +L++N   A  WP ++ +   LP+A +    K K  K  S N
Sbjct: 61  TPGQFQPFLELNERLAKLWPTLSRRTAPLPTAEQW---KDKTGKLASVN 106


>gi|57339928|gb|AAW49951.1| hypothetical protein FTT1764 [synthetic construct]
          Length = 142

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTE+CI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPV+AIK   D
Sbjct: 27  MPFVVTESCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVNAIKSSDD 86

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E  L +N E A  WPNI  K E    A     V  K  KY    P
Sbjct: 87  LSENEEQMLDLNRELAGIWPNIVEKCEPCEDADNWASVPDKL-KYLEKYP 135


>gi|152982663|ref|YP_001352409.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282740|gb|ABR91150.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 5/104 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE+CILC++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI  + D
Sbjct: 1   MTHVVTESCILCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
                ++++K+N + + +WP+IT  K   P  A+ +  K K +K
Sbjct: 61  VPADQQVFIKLNVDLSREWPSITKTK---PPMAEAEEWKDKTDK 101


>gi|113868553|ref|YP_727042.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527329|emb|CAJ93674.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 107

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++ +N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFINLNAELARNWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|194290186|ref|YP_002006093.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193224021|emb|CAQ70030.1| putative FERREDOXIN PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++++N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIELNAELARAWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|73541973|ref|YP_296493.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72119386|gb|AAZ61649.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 107

 Score =  108 bits (269), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++ +N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIDLNAELARNWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gi|300073740|gb|ADJ63139.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVT++C+ C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI  + D
Sbjct: 1  MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + ++ +N+E +  WP+IT  K  LP A
Sbjct: 61 VPADQQQYIALNAELSRSWPSITKTKAPLPEA 92


>gi|56708759|ref|YP_170655.1| ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89255529|ref|YP_512890.1| ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110671231|ref|YP_667788.1| ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115314046|ref|YP_762769.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118498303|ref|YP_899353.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. novicida U112]
 gi|134301185|ref|YP_001121153.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|167010305|ref|ZP_02275236.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656480|ref|YP_001427532.2| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|187930966|ref|YP_001890950.1| ferredoxin-1 [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194323887|ref|ZP_03057662.1| ferredoxin-1 [Francisella tularensis subsp. novicida FTE]
 gi|208780133|ref|ZP_03247476.1| ferredoxin-1 [Francisella novicida FTG]
 gi|224457976|ref|ZP_03666449.1| ferredoxin-1 [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254366956|ref|ZP_04982993.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|254368509|ref|ZP_04984526.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|254371377|ref|ZP_04987378.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|254371971|ref|ZP_04987464.1| ferredoxin [Francisella tularensis subsp. novicida GA99-3549]
 gi|254375113|ref|ZP_04990593.1| 4Fe-4S binding domain protein [Francisella novicida GA99-3548]
 gi|254875633|ref|ZP_05248343.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|290954290|ref|ZP_06558911.1| ferredoxin [Francisella tularensis subsp. holarctica URFT1]
 gi|295312297|ref|ZP_06803087.1| ferredoxin [Francisella tularensis subsp. holarctica URFT1]
 gi|54112673|gb|AAV28970.1| NT02FT0365 [synthetic construct]
 gi|56605251|emb|CAG46397.1| Ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89143360|emb|CAJ78530.1| Ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110321564|emb|CAL09780.1| Ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115128945|gb|ABI82132.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118424209|gb|ABK90599.1| 4Fe-4S ferredoxin [Francisella novicida U112]
 gi|134048962|gb|ABO46033.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134252783|gb|EBA51877.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|151569616|gb|EDN35270.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|151569702|gb|EDN35356.1| ferredoxin [Francisella novicida GA99-3549]
 gi|151572831|gb|EDN38485.1| 4Fe-4S binding domain protein [Francisella novicida GA99-3548]
 gi|157121403|gb|EDO65604.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|164551548|gb|ABU60576.2| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|187711875|gb|ACD30172.1| ferredoxin-1 [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194321784|gb|EDX19267.1| ferredoxin-1 [Francisella tularensis subsp. novicida FTE]
 gi|208744137|gb|EDZ90438.1| ferredoxin-1 [Francisella novicida FTG]
 gi|254841632|gb|EET20068.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282160082|gb|ADA79473.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332184867|gb|AEE27121.1| Ferredoxin [Francisella cf. novicida 3523]
 gi|332679040|gb|AEE88169.1| Ferredoxin [Francisella cf. novicida Fx1]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 67/106 (63%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTE+CI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPV+AIK   D
Sbjct: 1   MPFVVTESCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVNAIKSSDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                E  L +N E A  WPNI  K E    A     V  K  KY 
Sbjct: 61  LSENEEQMLDLNRELAGIWPNIVEKCEPCEDADNWASVPDKL-KYL 105


>gi|332529166|ref|ZP_08405130.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
 gi|332041389|gb|EGI77751.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
          Length = 109

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 67/94 (71%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI  + D
Sbjct: 1  MTHVVTEACIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59 TEPGLELWLKINSEYATQ--WPNITTKKESLPSA 90
             G    +K+N+E A    W +IT +K +LP A
Sbjct: 61 VPSGQMHMIKLNAELARAPGWKSITKRKAALPDA 94


>gi|109896757|ref|YP_660012.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas atlantica
           T6c]
 gi|109699038|gb|ABG38958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Pseudoalteromonas
           atlantica T6c]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +CEPECP  AI  D +
Sbjct: 1   MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCALCEPECPAKAIFQDDK 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             PG E + ++N+E +  WPNI         A + DGV  K E
Sbjct: 61  LPPGQEAFNELNAELSKIWPNIIEVIPPPADAKEWDGVPNKIE 103


>gi|56478120|ref|YP_159709.1| ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56314163|emb|CAI08808.1| Ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYVVTE CI CK+TDCV+VCPVDCF EG NFLAI P ECIDC +C  ECPV+AI  + D
Sbjct: 1  MTYVVTEACIRCKYTDCVDVCPVDCFREGANFLAIDPTECIDCTLCVAECPVEAIFAEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
             G   ++ +N+E A QW  I  +K+ LP A
Sbjct: 61 VPEGQRHFIALNAELAQQWKPIVERKDPLPDA 92


>gi|325982038|ref|YP_004294440.1| Ferredoxin, C-terminal protein [Nitrosomonas sp. AL212]
 gi|325531557|gb|ADZ26278.1| Ferredoxin, C-terminal protein [Nitrosomonas sp. AL212]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 70/104 (67%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  + D
Sbjct: 1   MAYVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
                  ++ +N+E + +W  I  KK++LP A     VK K ++
Sbjct: 61  VPDEQTHFISLNAELSKEWRPIIEKKDALPDADDWASVKDKLDQ 104


>gi|33594451|ref|NP_882095.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33564526|emb|CAE43841.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|332383862|gb|AEE68709.1| ferredoxin [Bordetella pertussis CS]
          Length = 107

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E + ++P+I+  K+ L  A + +GV+ K +
Sbjct: 61  VPQDQVPFIALNVELSAEFPSISRAKKPLEDADQWNGVQDKLQ 103


>gi|221066142|ref|ZP_03542247.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|264679310|ref|YP_003279217.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|299533455|ref|ZP_07046836.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
 gi|220711165|gb|EED66533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|262209823|gb|ACY33921.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|298718561|gb|EFI59537.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
          Length = 109

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 74/105 (70%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 61  -PGLEL-WLKINSEYAT--QWPNITTKKESLPSAAKMDGVKQKYE 101
            P  +L ++K+N + +    W +IT +K SLP A + +G   K +
Sbjct: 61  VPADQLAFIKLNVDLSQLKSWKSITKRKASLPDADEWNGKPNKVD 105


>gi|15640822|ref|NP_230453.1| ferredoxin [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585764|ref|ZP_01675559.1| ferredoxin [Vibrio cholerae 2740-80]
 gi|121725986|ref|ZP_01679285.1| ferredoxin [Vibrio cholerae V52]
 gi|147673974|ref|YP_001216287.1| ferredoxin [Vibrio cholerae O395]
 gi|153800583|ref|ZP_01955169.1| ferredoxin [Vibrio cholerae MZO-3]
 gi|153817247|ref|ZP_01969914.1| ferredoxin [Vibrio cholerae NCTC 8457]
 gi|153821403|ref|ZP_01974070.1| ferredoxin [Vibrio cholerae B33]
 gi|153824599|ref|ZP_01977266.1| ferredoxin [Vibrio cholerae MZO-2]
 gi|153828258|ref|ZP_01980925.1| ferredoxin [Vibrio cholerae 623-39]
 gi|227080983|ref|YP_002809534.1| ferredoxin [Vibrio cholerae M66-2]
 gi|229505581|ref|ZP_04395091.1| ferredoxin [Vibrio cholerae BX 330286]
 gi|229510747|ref|ZP_04400226.1| ferredoxin [Vibrio cholerae B33]
 gi|229513058|ref|ZP_04402524.1| ferredoxin [Vibrio cholerae TMA 21]
 gi|229517868|ref|ZP_04407312.1| ferredoxin [Vibrio cholerae RC9]
 gi|229525447|ref|ZP_04414852.1| ferredoxin [Vibrio cholerae bv. albensis VL426]
 gi|229530070|ref|ZP_04419460.1| ferredoxin [Vibrio cholerae 12129(1)]
 gi|229608599|ref|YP_002879247.1| ferredoxin [Vibrio cholerae MJ-1236]
 gi|254285518|ref|ZP_04960482.1| ferredoxin [Vibrio cholerae AM-19226]
 gi|254847941|ref|ZP_05237291.1| ferredoxin [Vibrio cholerae MO10]
 gi|258627223|ref|ZP_05722011.1| Ferredoxin [Vibrio mimicus VM603]
 gi|297581203|ref|ZP_06943127.1| ferredoxin [Vibrio cholerae RC385]
 gi|298499064|ref|ZP_07008871.1| ferredoxin [Vibrio cholerae MAK 757]
 gi|9655253|gb|AAF93968.1| ferredoxin [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550127|gb|EAX60143.1| ferredoxin [Vibrio cholerae 2740-80]
 gi|121631468|gb|EAX63838.1| ferredoxin [Vibrio cholerae V52]
 gi|124123872|gb|EAY42615.1| ferredoxin [Vibrio cholerae MZO-3]
 gi|126512163|gb|EAZ74757.1| ferredoxin [Vibrio cholerae NCTC 8457]
 gi|126521113|gb|EAZ78336.1| ferredoxin [Vibrio cholerae B33]
 gi|146315857|gb|ABQ20396.1| ferredoxin [Vibrio cholerae O395]
 gi|148876212|gb|EDL74347.1| ferredoxin [Vibrio cholerae 623-39]
 gi|149741817|gb|EDM55846.1| ferredoxin [Vibrio cholerae MZO-2]
 gi|150424380|gb|EDN16317.1| ferredoxin [Vibrio cholerae AM-19226]
 gi|227008871|gb|ACP05083.1| ferredoxin [Vibrio cholerae M66-2]
 gi|227012628|gb|ACP08838.1| ferredoxin [Vibrio cholerae O395]
 gi|229333844|gb|EEN99330.1| ferredoxin [Vibrio cholerae 12129(1)]
 gi|229339028|gb|EEO04045.1| ferredoxin [Vibrio cholerae bv. albensis VL426]
 gi|229344583|gb|EEO09557.1| ferredoxin [Vibrio cholerae RC9]
 gi|229349951|gb|EEO14905.1| ferredoxin [Vibrio cholerae TMA 21]
 gi|229350712|gb|EEO15653.1| ferredoxin [Vibrio cholerae B33]
 gi|229357804|gb|EEO22721.1| ferredoxin [Vibrio cholerae BX 330286]
 gi|229371254|gb|ACQ61677.1| ferredoxin [Vibrio cholerae MJ-1236]
 gi|254843646|gb|EET22060.1| ferredoxin [Vibrio cholerae MO10]
 gi|258580525|gb|EEW05486.1| Ferredoxin [Vibrio mimicus VM603]
 gi|297534519|gb|EFH73356.1| ferredoxin [Vibrio cholerae RC385]
 gi|297543397|gb|EFH79447.1| ferredoxin [Vibrio cholerae MAK 757]
 gi|327483585|gb|AEA77992.1| ferredoxin [Vibrio cholerae LMA3894-4]
          Length = 107

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WPN+T  K ++  AAK DGV  K +
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLD 103


>gi|30248037|ref|NP_840107.1| 7Fe ferredoxin [Nitrosomonas europaea ATCC 19718]
 gi|30179922|emb|CAD83917.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 107

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 70/104 (67%), Gaps = 2/104 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  + D
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
                  ++ +N+E +  W  I  KK++LP A +   V  K +K
Sbjct: 61  VPEDQRQFIALNAELSKIWDPIIEKKDALPDADEWASVTDKLDK 104


>gi|71278991|ref|YP_269613.1| ferredoxin, 4Fe-4S [Colwellia psychrerythraea 34H]
 gi|71144731|gb|AAZ25204.1| ferredoxin, 4Fe-4S [Colwellia psychrerythraea 34H]
          Length = 111

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCILCK+TDCV VCP D FYEG NFL I PD+CIDC +C  ECP  AI  + E
Sbjct: 1   MAFVVTDNCILCKYTDCVAVCPADAFYEGPNFLVISPDDCIDCDLCPVECPAGAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A  WP IT  K  L  A K DGV  K +
Sbjct: 61  VPADQQEFIELNAELAKHWPRITEVKPPLEQAEKWDGVADKIQ 103


>gi|319762492|ref|YP_004126429.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|330825657|ref|YP_004388960.1| ferredoxin, C-terminal protein [Alicycliphilus denitrificans K601]
 gi|317117053|gb|ADU99541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|329311029|gb|AEB85444.1| Ferredoxin, C-terminal protein [Alicycliphilus denitrificans K601]
          Length = 107

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVVENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCVPECPANAIFAEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  +L ++KIN+E   ++ +IT +K +LP A + +G   K +
Sbjct: 61  LPSDQLAFIKINAELTPKFKSITKRKAALPDADEWNGTPGKLK 103


>gi|91199775|emb|CAI78130.1| putative ferredoxin [Streptomyces ambofaciens ATCC 23877]
 gi|126347479|emb|CAJ89187.1| putative ferredoxin [Streptomyces ambofaciens ATCC 23877]
          Length = 118

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 3/111 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +TYVV E CI C+ TDCV+VCPVDCF+ GEN L IHP ECIDCG C PECPV AI  ++E
Sbjct: 8   VTYVVAEPCIRCRTTDCVDVCPVDCFHAGENMLVIHPYECIDCGACVPECPVSAIFEESE 67

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
              +   + ++N EYA +WP IT+K ++         V+ K +++F+P PG
Sbjct: 68  LPAKWGEYTELNLEYADKWPVITSKADAPSDWENWRDVEPK-KQHFNPAPG 117


>gi|237653740|ref|YP_002890054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237624987|gb|ACR01677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 107

 Score =  106 bits (265), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 8/104 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---- 56
           MTYVVTE CI CK+TDCV+VCPVDCF EG NFL I P+ECIDC +C  ECPV+AI     
Sbjct: 1   MTYVVTERCIRCKYTDCVDVCPVDCFREGPNFLVIDPEECIDCTLCVAECPVEAIYSEDD 60

Query: 57  -PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PD + G   ++ +N+E A QW  I  +K+ LP A     +K K
Sbjct: 61  VPDDQKG---YIALNAELAKQWKPIVERKDPLPDADHWARIKGK 101


>gi|268318191|ref|YP_003291910.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Rhodothermus marinus DSM 4252]
 gi|21389190|gb|AAM50525.1|AF515798_1 ferredoxin [Rhodothermus marinus]
 gi|262335725|gb|ACY49522.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Rhodothermus marinus DSM 4252]
          Length = 118

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 65/96 (67%), Gaps = 6/96 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVV E CI CK+TDCVEVCPVDCFYEG NFLAIHPDECIDC  C P CPV+AI PD E
Sbjct: 1  MPYVVCEPCINCKYTDCVEVCPVDCFYEGPNFLAIHPDECIDCNACVPTCPVEAIYPDDE 60

Query: 61 PGLEL--WLKINSEYATQWP----NITTKKESLPSA 90
             E   +++ N   A QW     NIT KK  LP A
Sbjct: 61 VPEEWQHYIEWNRYLAEQWKAMGYNITEKKGPLPDA 96


>gi|121611231|ref|YP_999038.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555871|gb|ABM60020.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 109

 Score =  106 bits (265), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV+ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 61  -PGLEL-WLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
            P  +L ++K+N++  +A  W +IT +K +LP A + +G   K ++   
Sbjct: 61  LPADQLAFIKLNADLAFAAGWKSITKRKGALPDADEWNGKPGKVDQLIR 109


>gi|317401942|gb|EFV82546.1| ferredoxin 1 [Achromobacter xylosoxidans C54]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  +L ++ +N+E + ++ +I+  K+ LP A + +G + K +
Sbjct: 61  VPQDQLNFIALNAELSPEFASISRAKKPLPDADEWNGKQDKLQ 103


>gi|170727750|ref|YP_001761776.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813097|gb|ACA87681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           M +VVT+NCI CK+TDCV VCPVD F+EG NFLAI+PD CIDC +C PEC   AI + D 
Sbjct: 1   MAFVVTDNCIRCKYTDCVAVCPVDAFHEGPNFLAINPDVCIDCELCVPECAAAAIFQEDA 60

Query: 60  EP-GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            P G+E +L++N+E A  WP IT   ++   A + DGV+ K E   
Sbjct: 61  LPEGMEQYLELNAELAQIWPVITEVIDAPLDAEQWDGVEDKREHLI 106


>gi|88857416|ref|ZP_01132059.1| putative ferredoxin [Pseudoalteromonas tunicata D2]
 gi|88820613|gb|EAR30425.1| putative ferredoxin [Pseudoalteromonas tunicata D2]
          Length = 121

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           M +VV +NCI CK+TDCV VCPVD F+EG NFLAI P  CIDCG+CEPECP +AI + D 
Sbjct: 15  MAFVVGDNCIKCKYTDCVAVCPVDAFFEGPNFLAISPIICIDCGLCEPECPAEAIFQEDA 74

Query: 60  EPGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  +  +L++N+E A  WPNIT  K     A   +GVK K +
Sbjct: 75  LPAEQHQYLELNAELAEIWPNITQVKTPPADADSWNGVKDKLK 117


>gi|74316053|ref|YP_313793.1| 7Fe ferredoxin [Thiobacillus denitrificans ATCC 25259]
 gi|74055548|gb|AAZ95988.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Thiobacillus denitrificans ATCC 25259]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVT+ C+ CK+TDCV+VCPVDCF+EG NFLAI P+ECIDC +C  ECPV+AI  + D
Sbjct: 1   MTYVVTDACVKCKYTDCVDVCPVDCFHEGPNFLAIDPEECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                  ++ +N+E A  W  I  + + LP A +  GVK K
Sbjct: 61  VPDDQRAYIALNAELAKAWKVIVERHDPLPDADEWAGVKDK 101


>gi|258619992|ref|ZP_05715032.1| Ferredoxin [Vibrio mimicus VM573]
 gi|258587725|gb|EEW12434.1| Ferredoxin [Vibrio mimicus VM573]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WPN+T  K ++  A+K DGV  K +
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEEASKWDGVPNKLD 103


>gi|293603978|ref|ZP_06686391.1| O-succinylhomoserine sulfhydrylase [Achromobacter piechaudii ATCC
           43553]
 gi|292817582|gb|EFF76650.1| O-succinylhomoserine sulfhydrylase [Achromobacter piechaudii ATCC
           43553]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  +L ++ +N+E + ++ +I+  K+ LP A   +G + K +
Sbjct: 61  VPQDQLNFIALNAELSPEFASISRAKKPLPDADDWNGKQDKLQ 103


>gi|255021029|ref|ZP_05293082.1| ferredoxin, 4Fe-4S [Acidithiobacillus caldus ATCC 51756]
 gi|254969443|gb|EET26952.1| ferredoxin, 4Fe-4S [Acidithiobacillus caldus ATCC 51756]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +CEPECP +AI  D +
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCEPECPAEAIFRDDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G E +L+IN+  A  WP I  KK +   A     VK K
Sbjct: 61  LPEGQEEFLEINARLAKTWPPIIQKKAAPADADDWAKVKDK 101


>gi|114330158|ref|YP_746380.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nitrosomonas eutropha C91]
 gi|114307172|gb|ABI58415.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nitrosomonas
           eutropha C91]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  + D
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E +  W  I  KK++LP A +   V  K +
Sbjct: 61  VAEDQRRFIALNAELSKIWEPIIEKKDALPDADEWASVTDKLD 103


>gi|332304879|ref|YP_004432730.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172208|gb|AEE21462.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 130

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +CEPECP  AI  D +
Sbjct: 24  MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCALCEPECPAKAIYQDDK 83

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E + ++N+E +  WPNI         A + DGV  K E
Sbjct: 84  LPAGQEAFNELNAELSKIWPNIIEVIPPPADAKEWDGVPNKLE 126


>gi|119474975|ref|ZP_01615328.1| ferredoxin, 4Fe-4S [marine gamma proteobacterium HTCC2143]
 gi|119451178|gb|EAW32411.1| ferredoxin, 4Fe-4S [marine gamma proteobacterium HTCC2143]
          Length = 112

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 66/92 (71%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVTE CI CK TDCV+VCPVDCF+EG NFL I+PD CIDC +C PECPVDAI  + D
Sbjct: 1  MTFVVTEQCIKCKFTDCVDVCPVDCFHEGPNFLVINPDGCIDCALCIPECPVDAIYEESD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + ++KIN++ + +WP I   ++ L  A
Sbjct: 61 LPDEFQEYIKINADLSARWPEILATQDPLEDA 92


>gi|311104718|ref|YP_003977571.1| ferredoxin 2 [Achromobacter xylosoxidans A8]
 gi|310759407|gb|ADP14856.1| ferredoxin 2 [Achromobacter xylosoxidans A8]
          Length = 107

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + +
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  ++ ++ +N+E + ++ +I+  K+ LP A + +G + K +
Sbjct: 61  VPQDQMNFIALNAELSPEFASISRAKKPLPDADEWNGKQDKLQ 103


>gi|229523379|ref|ZP_04412786.1| ferredoxin [Vibrio cholerae TM 11079-80]
 gi|229339742|gb|EEO04757.1| ferredoxin [Vibrio cholerae TM 11079-80]
          Length = 107

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WPN+T  K ++  A K DGV  K +
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEDAVKWDGVPNKLD 103


>gi|50956566|gb|AAT90813.1| probable ferredoxin [uncultured proteobacterium QS1]
          Length = 124

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI C+HT CV++CP D F+ G NF+ I PDEC+DCG+C PECP +AI+P+++
Sbjct: 1   MTYVVTDNCIQCRHTSCVDICPADAFHLGPNFIVISPDECVDCGLCLPECPEEAIEPESQ 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                  +L++N+E A +WP I  + E LP   K    + K
Sbjct: 61  LNDSNYHFLRLNAELAERWPVILQRIEPLPDYQKWSRQENK 101


>gi|254455104|ref|ZP_05068540.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
 gi|198263806|gb|EDY88077.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
          Length = 78

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 59/77 (76%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L IHPDECIDCGVCEPECP DAI  DT+ G E WL++NS++A +WPNI  + E+L +A 
Sbjct: 1   MLVIHPDECIDCGVCEPECPADAILADTDQGAETWLELNSKFAAKWPNIIQQSEALANAE 60

Query: 92  KMDGVKQKYEKYFSPNP 108
           + DG++ K++KYFS  P
Sbjct: 61  EYDGMENKFDKYFSSKP 77


>gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas arsenicoxydans]
 gi|133738747|emb|CAL61794.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 109

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 70/104 (67%), Gaps = 4/104 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVTE+CI CK+TDCV VCP+DCF+EG NFLAI+PDECIDC VC PECPV+AI    +
Sbjct: 1   MPFVVTESCIQCKYTDCVAVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKY 100
             P  + ++++N   +    W  I  +KE LP  AK   +K K 
Sbjct: 61  ISPEQQHFVELNRTLSRHPDWKRIRQQKEPLPEHAKWAELKDKL 104


>gi|163856039|ref|YP_001630337.1| ferredoxin 1 (FdI) [Bordetella petrii DSM 12804]
 gi|163259767|emb|CAP42068.1| Ferredoxin 1 (FdI) [Bordetella petrii]
          Length = 107

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E   ++  I+  K+ LP A + +GV  K +
Sbjct: 61  VPQDQVQFIALNAELTPEFAPISRAKKPLPDADEWNGVPDKLQ 103


>gi|198283226|ref|YP_002219547.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668155|ref|YP_002425458.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247747|gb|ACH83340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520368|gb|ACK80954.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 107

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 67/101 (66%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +CEPECP  AI  D +
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCEPECPAGAIFRDDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G + + +IN+  A  WP I  KK +   A     VK K
Sbjct: 61  MPDGQKEFEEINARLAKIWPAIIQKKAAPEDADAWLHVKDK 101


>gi|303257808|ref|ZP_07343818.1| ferredoxin, 4Fe-4S [Burkholderiales bacterium 1_1_47]
 gi|330998771|ref|ZP_08322499.1| ferredoxin-1 [Parasutterella excrementihominis YIT 11859]
 gi|302859411|gb|EFL82492.1| ferredoxin, 4Fe-4S [Burkholderiales bacterium 1_1_47]
 gi|329576268|gb|EGG57784.1| ferredoxin-1 [Parasutterella excrementihominis YIT 11859]
          Length = 109

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVTE CILCK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1   MAHVVTEPCILCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPTNAIMAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A  WP+IT  K     A K   V  K +
Sbjct: 61  VPEDQQEFIALNAELARVWPSITRMKPHTDEAEKWRDVLDKRQ 103


>gi|332992178|gb|AEF02233.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Alteromonas sp.
           SN2]
          Length = 108

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFLAI P  CIDC +C PECP DAI  DT 
Sbjct: 1   MTFVVTDNCINCKYTDCVAVCPVDAFFEGPNFLAIDPAICIDCALCVPECPADAIVQDTH 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +L IN E A +WPNI   K     A   +GV  K 
Sbjct: 61  LTDAQKPYLAINEELAAKWPNIIELKAPPEDADVWNGVPDKL 102


>gi|224826355|ref|ZP_03699457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
           nitroferrum 2002]
 gi|224601456|gb|EEG07637.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
           nitroferrum 2002]
          Length = 107

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 5/107 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE CI CK+TDCV+VCPVDCF+EG NFLAI PDECIDC +C  ECPV+AI  + +
Sbjct: 1   MAYVVTEACIKCKYTDCVDVCPVDCFHEGPNFLAIDPDECIDCTLCVAECPVEAIYAEED 60

Query: 61  -PGLEL-WLKINSEYATQWPNITTKKESLPSA---AKMDGVKQKYEK 102
            P  +L +++IN   +  WP I  KK+ LP     AK+ G  Q  E+
Sbjct: 61  VPADQLHFIEINDRLSKVWPVIAAKKDPLPDHEDWAKVTGKTQYLEE 107


>gi|94311387|ref|YP_584597.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355239|gb|ABF09328.1| Ferredoxin [Cupriavidus metallidurans CH34]
          Length = 107

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI  + +
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  + ++++N+E +  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIELNAELSRIWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|115379402|ref|ZP_01466505.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|310822281|ref|YP_003954639.1| ferrodoxin, 4fe-4S [Stigmatella aurantiaca DW4/3-1]
 gi|115363589|gb|EAU62721.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|309395353|gb|ADO72812.1| Ferrodoxin, 4Fe-4S [Stigmatella aurantiaca DW4/3-1]
          Length = 113

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 3/102 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPV+CFYEG NFL IHPDECIDCG CEP CP  AI P++E
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVNCFYEGANFLVIHPDECIDCGACEPVCPTKAIFPESE 60

Query: 61  --PGLELWLKINSEYAT-QWPNITTKKESLPSAAKMDGVKQK 99
                + +  +N + +   WPN+  K   LP A +    K K
Sbjct: 61  LPDKWKEYKDLNDKLSKGGWPNLAEKLSELPEADEYKDKKDK 102


>gi|152982564|ref|YP_001353330.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282641|gb|ABR91051.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 114

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%), Gaps = 4/104 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTE CI CK+TDCV VCP+DCF+EG NFLAI+PDECIDC VC PECPV+AI   TE
Sbjct: 1   MPFVVTEACIQCKYTDCVVVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGATE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKY 100
             P  + ++ +N E +    W  I+  KE +P   K   VK K 
Sbjct: 61  VAPEQQHFVALNRELSQHPDWKRISKPKEPMPGHEKWAQVKDKL 104


>gi|91788203|ref|YP_549155.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91697428|gb|ABE44257.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
          JS666]
          Length = 109

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 71/94 (75%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT++V+E+CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI  + +
Sbjct: 1  MTHIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 61 -PGLEL-WLKINSEY--ATQWPNITTKKESLPSA 90
           P  +L ++K+N+E   A  W +IT +K++LP A
Sbjct: 61 VPADQLQFIKLNAELSRAAGWKSITKRKDALPDA 94


>gi|268317837|ref|YP_003291556.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Rhodothermus marinus DSM 4252]
 gi|262335371|gb|ACY49168.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Rhodothermus marinus DSM 4252]
          Length = 118

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 64/96 (66%), Gaps = 6/96 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVV E CI CK+TDCVEVCPVD FYEG NFLAIHPDECIDC  C P CP +AI PD E
Sbjct: 1  MPYVVCEPCINCKYTDCVEVCPVDAFYEGPNFLAIHPDECIDCNACVPVCPTEAIYPDDE 60

Query: 61 PGLEL--WLKINSEYATQWP----NITTKKESLPSA 90
             E   +++ N   A QW     NIT KKE LP A
Sbjct: 61 VPEEWQHYIEWNRYLAEQWKAQGFNITQKKEPLPEA 96


>gi|254245946|ref|ZP_04939267.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
           PC184]
 gi|124870722|gb|EAY62438.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
           PC184]
          Length = 134

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 28  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 87

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + + ++N+E A  WP+IT  K +   A +   V+ K
Sbjct: 88  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQDK 128


>gi|206559364|ref|YP_002230125.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|206561234|ref|YP_002231999.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198035402|emb|CAR51278.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198037276|emb|CAR53198.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
          Length = 107

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + + ++N+E A  WP+IT  K +   A +   V++K
Sbjct: 61  VPTDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQEK 101


>gi|167586594|ref|ZP_02378982.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           ubonensis Bu]
          Length = 107

 Score =  104 bits (260), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + +  +N+E A  WP+IT  K +   A +   V++K
Sbjct: 61  VPSDQQQFTALNAELAKNWPSITKTKPAPADADEWKDVQEK 101


>gi|167720232|ref|ZP_02403468.1| ferredoxin [Burkholderia pseudomallei DM98]
 gi|167846357|ref|ZP_02471865.1| ferredoxin [Burkholderia pseudomallei B7210]
 gi|167903326|ref|ZP_02490531.1| ferredoxin [Burkholderia pseudomallei NCTC 13177]
          Length = 107

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 4/102 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGL 63
            E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   E     
Sbjct: 1   MEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQ 60

Query: 64  ELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
             ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  RHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|319943296|ref|ZP_08017579.1| ferredoxin [Lautropia mirabilis ATCC 51599]
 gi|319743838|gb|EFV96242.1| ferredoxin [Lautropia mirabilis ATCC 51599]
          Length = 107

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++V +NCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI  + +
Sbjct: 1   MAHIVLDNCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCVPECPAEAIVAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            PG  E ++ IN+E A  WP IT  K  L  A   +G   K +
Sbjct: 61  VPGDQENFIAINAEKAPNWPAITRSKSPLEDADDWNGTPNKLQ 103


>gi|238650840|ref|YP_002916695.1| ferredoxin [Rickettsia peacockii str. Rustic]
 gi|238624938|gb|ACR47644.1| ferredoxin [Rickettsia peacockii str. Rustic]
          Length = 108

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 71/104 (68%), Gaps = 9/104 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKE--SLPSAAKMDGV 96
           P++ PGL  W++   ++     W NIT KK    +P   KM  +
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKLLCLMPINLKMRKI 103


>gi|115351029|ref|YP_772868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia ambifaria AMMD]
 gi|170700862|ref|ZP_02891850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria IOP40-10]
 gi|171317138|ref|ZP_02906340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MEX-5]
 gi|172060034|ref|YP_001807686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia ambifaria MC40-6]
 gi|115281017|gb|ABI86534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           ambifaria AMMD]
 gi|170134225|gb|EDT02565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria IOP40-10]
 gi|171097705|gb|EDT42535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MEX-5]
 gi|171992551|gb|ACB63470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MC40-6]
          Length = 107

 Score =  104 bits (260), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + + ++N+E A  WP+IT  K +   A +   V++K
Sbjct: 61  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQEK 101


>gi|167744446|ref|ZP_02417220.1| putative ferredoxin [Burkholderia pseudomallei 14]
          Length = 107

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 4/102 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGL 63
            E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   E     
Sbjct: 1   MEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQ 60

Query: 64  ELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
             ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  RPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|167895283|ref|ZP_02482685.1| putative ferredoxin [Burkholderia pseudomallei 7894]
 gi|167919911|ref|ZP_02507002.1| putative ferredoxin [Burkholderia pseudomallei BCC215]
 gi|237813231|ref|YP_002897682.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|237504029|gb|ACQ96347.1| ferredoxin [Burkholderia pseudomallei MSHR346]
          Length = 107

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + +  +N+E A  WP+IT  K +   A +   V++K
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQEK 101


>gi|107022176|ref|YP_620503.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia AU
           1054]
 gi|116689122|ref|YP_834745.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia cenocepacia HI2424]
 gi|170732410|ref|YP_001764357.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia cenocepacia MC0-3]
 gi|105892365|gb|ABF75530.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           cenocepacia AU 1054]
 gi|116647211|gb|ABK07852.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           cenocepacia HI2424]
 gi|169815652|gb|ACA90235.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           cenocepacia MC0-3]
          Length = 107

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + + ++N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQDKL 102


>gi|255020217|ref|ZP_05292286.1| putative ferredoxin [Acidithiobacillus caldus ATCC 51756]
 gi|254970359|gb|EET27852.1| putative ferredoxin [Acidithiobacillus caldus ATCC 51756]
          Length = 108

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYVVTENCI CK+TDC EVCPV+CF+EG NFLAI P ECIDC  C PECP DAI  + D
Sbjct: 1  MTYVVTENCIQCKYTDCAEVCPVECFHEGPNFLAIDPVECIDCAACVPECPADAIFAEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                 +  +N+E +  WP I  KK +   A + +G
Sbjct: 61 VPEDQRDFTALNAELSKHWPVILRKKAAPADADEWNG 97


>gi|241767844|ref|ZP_04765425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
          delafieldii 2AN]
 gi|241361074|gb|EER57771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
          delafieldii 2AN]
          Length = 109

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 73/99 (73%), Gaps = 4/99 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV+ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI  + +
Sbjct: 1  MTHVVSENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 61 -PGLEL-WLKINSE--YATQWPNITTKKESLPSAAKMDG 95
           P  ++ ++K+N++  +A  W +IT +K +LP A + +G
Sbjct: 61 LPADQIAFIKLNADLAFADGWKSITKRKPALPDADEWNG 99


>gi|221201316|ref|ZP_03574355.1| putative ferredoxin [Burkholderia multivorans CGD2M]
 gi|221208796|ref|ZP_03581794.1| putative ferredoxin [Burkholderia multivorans CGD2]
 gi|221214124|ref|ZP_03587097.1| putative ferredoxin [Burkholderia multivorans CGD1]
 gi|221166301|gb|EED98774.1| putative ferredoxin [Burkholderia multivorans CGD1]
 gi|221171252|gb|EEE03701.1| putative ferredoxin [Burkholderia multivorans CGD2]
 gi|221178584|gb|EEE10992.1| putative ferredoxin [Burkholderia multivorans CGD2M]
          Length = 136

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 30  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 89

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K
Sbjct: 90  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDK 130


>gi|134295130|ref|YP_001118865.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia vietnamiensis G4]
 gi|134138287|gb|ABO54030.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           vietnamiensis G4]
 gi|325527386|gb|EGD04739.1| ferredoxin [Burkholderia sp. TJI49]
          Length = 107

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTALNAELAKNWPSITKTKPAPADADEWKDVQDKL 102


>gi|149187260|ref|ZP_01865558.1| ferredoxin [Vibrio shilonii AK1]
 gi|148838796|gb|EDL55735.1| ferredoxin [Vibrio shilonii AK1]
          Length = 107

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D FYEG NF+ I P +CIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFYEGPNFMVISPIDCIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                ++++++N+E A  WPNIT  K ++  A K +GV  K
Sbjct: 61  LTEDQQVFIELNAELAEVWPNITEVKPAMDEAEKWNGVPNK 101


>gi|53725758|ref|YP_102306.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|254199200|ref|ZP_04905566.1| ferredoxin [Burkholderia mallei FMH]
 gi|52429181|gb|AAU49774.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|147748796|gb|EDK55870.1| ferredoxin [Burkholderia mallei FMH]
          Length = 107

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + +  +N+E A  WP+IT  K +   A +   V++K
Sbjct: 61  VPGDQQHFTALNAELAKDWPSITKTKPAPADANEWKDVQEK 101


>gi|53720069|ref|YP_109055.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|76809315|ref|YP_334313.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|124383747|ref|YP_001028729.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126441887|ref|YP_001059835.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126453420|ref|YP_001067122.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|134277063|ref|ZP_01763778.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|167002775|ref|ZP_02268565.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|167720598|ref|ZP_02403834.1| putative ferredoxin [Burkholderia pseudomallei DM98]
 gi|167739587|ref|ZP_02412361.1| putative ferredoxin [Burkholderia pseudomallei 14]
 gi|167816790|ref|ZP_02448470.1| putative ferredoxin [Burkholderia pseudomallei 91]
 gi|167825197|ref|ZP_02456668.1| putative ferredoxin [Burkholderia pseudomallei 9]
 gi|167846694|ref|ZP_02472202.1| putative ferredoxin [Burkholderia pseudomallei B7210]
 gi|167903669|ref|ZP_02490874.1| putative ferredoxin [Burkholderia pseudomallei NCTC 13177]
 gi|167911917|ref|ZP_02499008.1| putative ferredoxin [Burkholderia pseudomallei 112]
 gi|217420695|ref|ZP_03452200.1| ferredoxin-1 [Burkholderia pseudomallei 576]
 gi|242316088|ref|ZP_04815104.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|254191212|ref|ZP_04897716.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|254195729|ref|ZP_04902155.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|254261489|ref|ZP_04952543.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|262193289|ref|YP_001081365.2| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|52210483|emb|CAH36466.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|76578768|gb|ABA48243.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|124291767|gb|ABN01036.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126221380|gb|ABN84886.1| ferredoxin-1 [Burkholderia pseudomallei 668]
 gi|126227062|gb|ABN90602.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|134250713|gb|EBA50792.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|157938884|gb|EDO94554.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|169652474|gb|EDS85167.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|217396107|gb|EEC36124.1| ferredoxin-1 [Burkholderia pseudomallei 576]
 gi|242139327|gb|EES25729.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|243061597|gb|EES43783.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|254220178|gb|EET09562.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|261835061|gb|ABO05614.2| ferredoxin [Burkholderia mallei NCTC 10247]
          Length = 107

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + +  +N+E A  WP+IT  K +   A +   V++K
Sbjct: 61  VPGDQQHFTALNAELAKDWPSITKTKPAPADADEWKDVQEK 101


>gi|254252880|ref|ZP_04946198.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa AUO158]
 gi|124895489|gb|EAY69369.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa AUO158]
          Length = 134

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 28  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 87

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K
Sbjct: 88  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDK 128


>gi|78065684|ref|YP_368453.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
 gi|77966429|gb|ABB07809.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
          Length = 107

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQDKL 102


>gi|34581123|ref|ZP_00142603.1| ferredoxin [Rickettsia sibirica 246]
 gi|28262508|gb|EAA26012.1| ferredoxin [Rickettsia sibirica 246]
          Length = 127

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 9/104 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+P+ECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPNECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKE--SLPSAAKMDGV 96
           P++ PGL  W++   ++     W NIT KK    +P   KM  +
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKLLCLMPINLKMRKI 103


>gi|149911417|ref|ZP_01900035.1| putative ferredoxin [Moritella sp. PE36]
 gi|149805525|gb|EDM65530.1| putative ferredoxin [Moritella sp. PE36]
          Length = 107

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CKH DCV VCP D F+EG NFL I P  CIDCG+C PECPVDAI  + E
Sbjct: 1   MAFVVTENCIKCKHGDCVPVCPADAFHEGPNFLVIDPIACIDCGLCVPECPVDAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++++IN E +  WP IT K E    A   DGV+ K 
Sbjct: 61  VPEDQQVFIEINEELSELWPVITEKCEPPADADDWDGVENKL 102


>gi|83720589|ref|YP_442231.1| ferredoxin [Burkholderia thailandensis E264]
 gi|167581116|ref|ZP_02373990.1| ferredoxin [Burkholderia thailandensis TXDOH]
 gi|167619199|ref|ZP_02387830.1| ferredoxin [Burkholderia thailandensis Bt4]
 gi|257138424|ref|ZP_05586686.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83654414|gb|ABC38477.1| ferredoxin [Burkholderia thailandensis E264]
          Length = 107

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
            PG  + + ++N+E A  WP+IT  K +   A +   V+ K
Sbjct: 61  VPGDQQQFTELNAELAKAWPSITKTKPAPADADEWKDVQDK 101


>gi|167837385|ref|ZP_02464268.1| 4Fe-4S ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 107

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQDKL 102


>gi|332284971|ref|YP_004416882.1| ferredoxin [Pusillimonas sp. T7-7]
 gi|330428924|gb|AEC20258.1| ferredoxin [Pusillimonas sp. T7-7]
          Length = 107

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MT+VVTENCI CK TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1   MTHVVTENCIKCKFTDCVDVCPVDCFREGANFLVIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++++N+E   ++  I   K+ LP A   +G+  K +
Sbjct: 61  VPQDQISFIELNAELTPEFGMINRSKKPLPEADDWNGMPDKLK 103


>gi|319793283|ref|YP_004154923.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
          paradoxus EPS]
 gi|315595746|gb|ADU36812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
          paradoxus EPS]
          Length = 109

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 69/94 (73%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV+E CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI  + +
Sbjct: 1  MTHVVSEACIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 61 -PGLEL-WLKINSEYATQ--WPNITTKKESLPSA 90
           P  ++ ++KIN+E A    W +IT +K +LP A
Sbjct: 61 LPANQIAFIKINAELALADGWKSITKRKPALPDA 94


>gi|161525374|ref|YP_001580386.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349889|ref|YP_001945517.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|160342803|gb|ABX15889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333911|dbj|BAG42981.1| ferredoxin [Burkholderia multivorans ATCC 17616]
          Length = 107

 Score =  102 bits (255), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKL 102


>gi|187926655|ref|YP_001893000.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|241666167|ref|YP_002984526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
 gi|187728409|gb|ACD29573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|240868194|gb|ACS65854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 112

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI P  E
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICVPECPVGAIYPAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N++ + +  WP +T  +  LP  A    VK K +
Sbjct: 61  VPADQQDFIALNAQLSRRADWPRLTKVQPPLPDHAHWAQVKDKRD 105


>gi|239815386|ref|YP_002944296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
          paradoxus S110]
 gi|239801963|gb|ACS19030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
          paradoxus S110]
          Length = 109

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV+E CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI  + +
Sbjct: 1  MTHVVSEACIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 61 -PGLEL-WLKINSEYATQ--WPNITTKKESLPSA 90
           P  ++ ++K+N+E A    W +IT +K +LP A
Sbjct: 61 LPANQIAFIKLNAELAVADGWKSITKRKPALPDA 94


>gi|119468754|ref|ZP_01611806.1| putative ferredoxin [Alteromonadales bacterium TW-7]
 gi|119447810|gb|EAW29076.1| putative ferredoxin [Alteromonadales bacterium TW-7]
          Length = 107

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PECP +AI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECPAEAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A  WP IT  K +   A   +GV+ K +
Sbjct: 61  LPDSQKEFTELNAELALIWPRITQVKSAPDDADTWNGVENKLK 103


>gi|77362322|ref|YP_341896.1| putative ferredoxin [Pseudoalteromonas haloplanktis TAC125]
 gi|76877233|emb|CAI89450.1| putative ferredoxin [Pseudoalteromonas haloplanktis TAC125]
          Length = 107

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECSADAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A  WP IT  K +   A + +G+  K +
Sbjct: 61  LPESQQEFTELNAELALIWPRITQAKPAPADADEWNGIADKLK 103


>gi|291613179|ref|YP_003523336.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583291|gb|ADE10949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 107

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTENCI CK+TDCV+VCPVDCF+EG NFL I P ECIDC +C  ECP +AI  + D
Sbjct: 1   MAYVVTENCIKCKYTDCVDVCPVDCFHEGPNFLVIDPGECIDCTLCVAECPANAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E A QW  I  KK +   A +   VK K  
Sbjct: 61  VPVDQRQFIALNAELAKQWKVIVEKKAAPADADEWRDVKDKLR 103


>gi|254428704|ref|ZP_05042411.1| 4Fe-4S binding domain protein [Alcanivorax sp. DG881]
 gi|196194873|gb|EDX89832.1| 4Fe-4S binding domain protein [Alcanivorax sp. DG881]
          Length = 90

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 64/88 (72%), Gaps = 2/88 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           +EVCPVDCFYEGENFL IHPDECIDC +CEPECPV+AI  + E     + +L+IN++ A 
Sbjct: 1   MEVCPVDCFYEGENFLVIHPDECIDCALCEPECPVNAIFSEDELPDDQQDFLEINADLAE 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +WPNIT  K++   A + DGV  K EK 
Sbjct: 61  KWPNITEMKDAPDDAEEWDGVPNKREKL 88


>gi|89901238|ref|YP_523709.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89345975|gb|ABD70178.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
          T118]
          Length = 109

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/94 (58%), Positives = 64/94 (68%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+ VTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI  + D
Sbjct: 1  MTHTVTEACIKCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59 TEPGLELWLKINSEYAT--QWPNITTKKESLPSA 90
               +   KIN+E A    W  IT +K +LP A
Sbjct: 61 VPKDQQHMTKINAELAKLPGWKTITKRKPALPEA 94


>gi|330815952|ref|YP_004359657.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           gladioli BSR3]
 gi|327368345|gb|AEA59701.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           gladioli BSR3]
          Length = 107

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFAPLNAELAKLWPSITKTKPAPGDADEWKDVQDKL 102


>gi|217968856|ref|YP_002354090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506183|gb|ACK53194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 117

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV +CPVD F EG NFL I P+ECIDC +C  ECPVDAI P+ E
Sbjct: 1   MTHVVTEACIRCKYTDCVSMCPVDAFREGPNFLVIDPEECIDCTLCVAECPVDAIVPEDE 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
              E   +L +N+  A  WP I      LP A     V  K     +   G  + 
Sbjct: 61  LSDEQREYLALNAALAKDWPRIVEAHAPLPDADAWAKVADKRAWLDTARAGDPDA 115


>gi|238026583|ref|YP_002910814.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia glumae BGR1]
 gi|237875777|gb|ACR28110.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia glumae BGR1]
          Length = 107

 Score =  101 bits (252), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + +  +N+E A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTPLNAELAKLWPSITKTKPAPGDADEWKDVQDKL 102


>gi|167563567|ref|ZP_02356483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           oklahomensis EO147]
 gi|167570727|ref|ZP_02363601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           oklahomensis C6786]
          Length = 107

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61  -PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            PG  + + ++N++ A  WP+IT  K +   A +   V+ K 
Sbjct: 61  VPGDQQQFTELNADLAKIWPSITKTKPAPADADEWKDVQDKL 102


>gi|117573290|gb|ABK40821.1| ferredoxin [Pseudomonas sp. C10-181]
          Length = 89

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 19 EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQ 76
          EVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E ++ +N+E A  
Sbjct: 1  EVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGMENFIVLNAELADI 60

Query: 77 WPNITTKKESLPSAAKMDGVKQK 99
          WPNIT KK++LP A + DG + K
Sbjct: 61 WPNITEKKDALPDAEEWDGKEGK 83


>gi|300697403|ref|YP_003748064.1| Ferredoxin 1 [Ralstonia solanacearum CFBP2957]
 gi|299074127|emb|CBJ53671.1| Ferredoxin 1 [Ralstonia solanacearum CFBP2957]
          Length = 116

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 5/116 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAESD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF-SPNPGGK 111
                  ++ +N++ + +  WP +T  +  L   A+   VK K +    +P PG +
Sbjct: 61  VPADQREFIALNAQLSRRPDWPRLTQVQPPLADHARWAQVKDKRDTLLITPEPGTR 116


>gi|167816449|ref|ZP_02448129.1| putative ferredoxin [Burkholderia pseudomallei 91]
 gi|167894938|ref|ZP_02482340.1| putative ferredoxin [Burkholderia pseudomallei 7894]
          Length = 107

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 4/102 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGL 63
            E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   E     
Sbjct: 1   MEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQ 60

Query: 64  ELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
             ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  RHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|315123428|ref|YP_004065434.1| putative ferredoxin [Pseudoalteromonas sp. SM9913]
 gi|315017188|gb|ADT70525.1| putative ferredoxin [Pseudoalteromonas sp. SM9913]
          Length = 107

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECAADAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A  WP IT  K +   A   +GV  K +
Sbjct: 61  LPESQKEFTQLNAELAEIWPRITQVKPAPEDADSWNGVANKLK 103


>gi|121605331|ref|YP_982660.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120594300|gb|ABM37739.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Polaromonas naphthalenivorans CJ2]
          Length = 109

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 70/94 (74%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VV++ CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI  + +
Sbjct: 1  MTHVVSDPCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 61 -PGLEL-WLKINSEYATQ--WPNITTKKESLPSA 90
           P  +L ++KIN++  +   W +IT +K++LP A
Sbjct: 61 LPSDQLHFIKINADLTSAPGWKSITKRKDALPDA 94


>gi|83749935|ref|ZP_00946892.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|83723395|gb|EAP70616.1| Ferredoxin [Ralstonia solanacearum UW551]
          Length = 145

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 5/117 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI  + D
Sbjct: 28  MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAEAD 87

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF-SPNPGGKN 112
                  ++ +N++ + +  WP +T  +  L   A+   VK K      +P PG + 
Sbjct: 88  VPADQREFIALNAQLSRRPDWPRLTQVQPPLADHARWAQVKDKRSTLLIAPEPGTQT 144


>gi|260221336|emb|CBA29796.1| Ferredoxin-1 [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 109

 Score =  100 bits (249), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 64/94 (68%), Gaps = 4/94 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT++VTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1  MTHIVTEACIKCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59 TEPGLELWLKINSEYAT--QWPNITTKKESLPSA 90
               +  + +N+E A    W +IT +K  LP A
Sbjct: 61 APKDQQHMIALNAELARLPGWKSITKRKAPLPDA 94


>gi|300693746|ref|YP_003749719.1| ferredoxin 1 [Ralstonia solanacearum PSI07]
 gi|299075783|emb|CBJ35088.1| Ferredoxin 1 [Ralstonia solanacearum PSI07]
          Length = 112

 Score =  100 bits (248), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ + +  WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|309782798|ref|ZP_07677519.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
 gi|308918576|gb|EFP64252.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
          Length = 112

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI P  E
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICVPECPVGAIYPAAE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N++ + +  WP +T  +  L   A    VK K +
Sbjct: 61  VPADQQDFIALNAQLSRRADWPRLTKVQAPLQDHAHWAQVKDKRD 105


>gi|114769350|ref|ZP_01446976.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114550267|gb|EAU53148.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 81

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 54/78 (69%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L IHPDECIDCGVCEPECP DAI PDTEP  E W++ N +Y+  WP I ++K  LP A 
Sbjct: 1   MLVIHPDECIDCGVCEPECPADAILPDTEPDTEKWVEFNRKYSEIWPVIISQKTPLPDAE 60

Query: 92  KMDGVKQKYEKYFSPNPG 109
             DG + K EKYFS  PG
Sbjct: 61  VRDGEEGKLEKYFSEKPG 78


>gi|319941592|ref|ZP_08015918.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319804962|gb|EFW01804.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 110

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VV E CI CK TDCV+VCPVDCF EG NFL I PDECIDC VC PECP  AI  + D
Sbjct: 1   MPHVVCEACIGCKRTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPEAAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++++N+E A +WP+IT +K     A +  GV  K
Sbjct: 61  VPEDQKEFIELNAELAREWPSITHRKPYADDADEWRGVPNK 101


>gi|302879644|ref|YP_003848208.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Gallionella capsiferriformans ES-2]
 gi|302582433|gb|ADL56444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 107

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYVV+ENCI CK TDCV+VCPVDCF EG NFL I PDECIDC +C  ECP +AI  + D
Sbjct: 1   MTYVVSENCIKCKFTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  +  +N+E +  W  I  KK+    A +  GVK K 
Sbjct: 61  LPADQTHFTALNAELSKLWGVIVEKKDPPADAEEWQGVKDKL 102


>gi|332532550|ref|ZP_08408427.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037971|gb|EGI74419.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 107

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECSADAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A  WP IT  K +   A   +G+  K +
Sbjct: 61  LPESQKEFTELNAELALVWPRITEVKPAPEDADVWNGIDDKLK 103


>gi|307069599|ref|YP_003878076.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
          [Candidatus Zinderia insecticola CARI]
 gi|306482859|gb|ADM89730.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
          [Candidatus Zinderia insecticola CARI]
          Length = 110

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 62/86 (72%), Gaps = 2/86 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT++VTE+CI CK+TDCVEVCPV+CF+EG NFL I+P+ECIDCGVC  ECP  AI  + D
Sbjct: 1  MTHIVTESCIECKYTDCVEVCPVNCFHEGPNFLVINPEECIDCGVCVSECPAKAIYLEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKK 84
               + + KIN E + +WP I   K
Sbjct: 61 LPKNQKQFSKINLELSKKWPIINNSK 86


>gi|17549028|ref|NP_522368.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17431279|emb|CAD17958.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 112

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ + +  WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|83815572|ref|YP_444389.1| ferredoxin [Salinibacter ruber DSM 13855]
 gi|83756966|gb|ABC45079.1| ferredoxin [Salinibacter ruber DSM 13855]
          Length = 148

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI P+ +
Sbjct: 35  MPYVVAEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPEDQ 94

Query: 61  --PGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVKQKYEKYFS 105
                E + + N   A QW     N+T K   L  A   +  ++  E   +
Sbjct: 95  LPEEWEHYTQWNEYLANQWRDLGYNVTEKTGPLDDAEAWEDAEKSEEDILT 145


>gi|294506132|ref|YP_003570190.1| Ferredoxin [Salinibacter ruber M8]
 gi|294342460|emb|CBH23238.1| Ferredoxin [Salinibacter ruber M8]
          Length = 141

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI P+ +
Sbjct: 28  MPYVVAEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPEDQ 87

Query: 61  --PGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVKQKYEKYFS 105
                E + + N   A QW     N+T K   L  A   +  ++  E   +
Sbjct: 88  LPEEWEHYTQWNEYLANQWRDLGYNVTEKTGPLDDAEAWEDAEKSEEDILT 138


>gi|83816596|ref|YP_445271.1| ferredoxin-1 [Salinibacter ruber DSM 13855]
 gi|294507140|ref|YP_003571198.1| Ferredoxin-1 [Salinibacter ruber M8]
 gi|83757990|gb|ABC46103.1| ferredoxin-1 [Salinibacter ruber DSM 13855]
 gi|294343468|emb|CBH24246.1| Ferredoxin-1 [Salinibacter ruber M8]
          Length = 114

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 62/93 (66%), Gaps = 6/93 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI PD +
Sbjct: 1  MPYVVTEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPDDQ 60

Query: 61 --PGLELWLKINSEYATQWP----NITTKKESL 87
               E +++ N   + QW     N+T K   L
Sbjct: 61 LPEEYEHYIQWNEYLSNQWRELGYNVTEKTGPL 93


>gi|299069168|emb|CBJ40421.1| Ferredoxin 1 [Ralstonia solanacearum CMR15]
          Length = 112

 Score = 97.4 bits (241), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ + +  WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas arsenicoxydans]
 gi|133739411|emb|CAL62461.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 116

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 62/96 (64%), Gaps = 4/96 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTE CI CK+TDCV VCP+DCF EG NFL I+PDECIDC +C  ECPV AI  D E
Sbjct: 1  MTFVVTEPCIQCKYTDCVTVCPMDCFMEGPNFLVINPDECIDCSMCVAECPVGAIVGDRE 60

Query: 61 PGLEL--WLKINSEYATQ--WPNITTKKESLPSAAK 92
             +   +L++N   +    W  IT  K +LP   K
Sbjct: 61 LAADQAHFLELNRSLSAHPDWQRITMSKPALPEHEK 96


>gi|323496163|ref|ZP_08101221.1| ferredoxin [Vibrio sinaloensis DSM 21326]
 gi|323318440|gb|EGA71393.1| ferredoxin [Vibrio sinaloensis DSM 21326]
          Length = 107

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                ++++++N+E A  WP  T  K ++  A K +GV  K
Sbjct: 61  VPADQKIYIELNAELAEHWPVQTEVKPAMDEAEKWNGVADK 101


>gi|152982480|ref|YP_001354084.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282557|gb|ABR90967.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 114

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M Y+VTE CI CK  DC+EVCP   F+ GENF+ I+PD C++CG+CE  CP  AIK   D
Sbjct: 1   MAYIVTEACIRCKFMDCIEVCPTYAFHAGENFVVINPDTCVNCGLCEMVCPTQAIKAKGD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE-KYFSPNPGGK 111
                 +++++N+  A  WP IT K      A    GV  K E   ++P+P  K
Sbjct: 61  ATEKELVFVELNARLAKNWPAITQKGMVPADAGNWIGVSDKKEFLLYTPDPAAK 114


>gi|56478031|ref|YP_159620.1| ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56314074|emb|CAI08719.1| ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 107

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 62/103 (60%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CKHTDCV+VCP D F EG NFL I P+ECIDC +C  ECPVDAI  D +
Sbjct: 1   MTYVVTEACIKCKHTDCVDVCPTDAFREGPNFLVIDPEECIDCTLCVAECPVDAIYADDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E A +W  I   K +   A     VK K +
Sbjct: 61  VPDDQRQFIALNEELAKEWKPIVEVKPAPEDAGMWATVKDKLK 103


>gi|262197809|ref|YP_003269018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081156|gb|ACY17125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 131

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 70/133 (52%), Gaps = 26/133 (19%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M Y+V + C+ CK+TDCV VCPVDCFYEG+NFL IHPDECIDCG CEPECP  AI  + D
Sbjct: 1   MPYIVADPCVKCKYTDCVAVCPVDCFYEGKNFLVIHPDECIDCGACEPECPTTAIFEEGD 60

Query: 59  TEPGLELWLKINSEY---------------------ATQWPNITTKKESLPSAAKMDGVK 97
                  +  IN+ +                     A  WPNIT +   L  A   D  K
Sbjct: 61  LPEKWNAYKTINAVFSGAEEMGDVDTEGWPEQLKASAQVWPNITEQGSPLDGA---DDAK 117

Query: 98  QKYEKYFSPNPGG 110
            +  K  + +P G
Sbjct: 118 DEENKIAALSPEG 130


>gi|254456143|ref|ZP_05069572.1| ferredoxin [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083145|gb|EDZ60571.1| ferredoxin [Candidatus Pelagibacter sp. HTCC7211]
          Length = 77

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 53/76 (69%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L I PDECIDCGVCEPECPVDAI  DTEPG E WL+IN++Y+  WPNI+ KK+      
Sbjct: 1   MLVIKPDECIDCGVCEPECPVDAITADTEPGSEKWLEINTKYSEIWPNISEKKDPPTDHE 60

Query: 92  KMDGVKQKYEKYFSPN 107
           K    + KYEKYF  N
Sbjct: 61  KFKDEQNKYEKYFKEN 76


>gi|86145740|ref|ZP_01064069.1| ferredoxin [Vibrio sp. MED222]
 gi|218676912|ref|YP_002395731.1| Ferredoxin [Vibrio splendidus LGP32]
 gi|85836439|gb|EAQ54568.1| ferredoxin [Vibrio sp. MED222]
 gi|218325180|emb|CAV27087.1| Ferredoxin [Vibrio splendidus LGP32]
          Length = 107

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VV +NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + D
Sbjct: 1   MAFVVGDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K  +  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKAPMDEAEKWNGVADKL 102


>gi|283780774|ref|YP_003371529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pirellula staleyi DSM 6068]
 gi|283439227|gb|ADB17669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
          staleyi DSM 6068]
          Length = 92

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M +VV + C  CK+TDCV VCPV+CFYEGE  L IHPDECIDC  C PECPV+AI  + +
Sbjct: 1  MAHVVCQPCFGCKYTDCVVVCPVECFYEGEQILYIHPDECIDCEACVPECPVEAIFHQDN 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESL 87
               + ++++N+E A Q P+IT KKE L
Sbjct: 61 VPEDQKPFIELNAEMAPQSPSITEKKEPL 89


>gi|84385231|ref|ZP_00988263.1| ferredoxin [Vibrio splendidus 12B01]
 gi|84379828|gb|EAP96679.1| ferredoxin [Vibrio splendidus 12B01]
          Length = 107

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV +NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVGDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K  +  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKAPMDEAEKWNGVSDKL 102


>gi|194288740|ref|YP_002004647.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193222575|emb|CAQ68578.1| putative FERREDOXIN [Cupriavidus taiwanensis LMG 19424]
          Length = 109

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 4/99 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI  + D
Sbjct: 1  MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59 TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDG 95
                 +L +N+E + +  W  +T  K  LP   +  G
Sbjct: 61 LPEDQRHFLALNAELSRRPDWLPLTQAKGPLPDHEQWAG 99


>gi|323494050|ref|ZP_08099166.1| ferredoxin [Vibrio brasiliensis LMG 20546]
 gi|323311677|gb|EGA64825.1| ferredoxin [Vibrio brasiliensis LMG 20546]
          Length = 107

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 +++++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  VPDDQTIYIQLNAELAELWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|149916919|ref|ZP_01905420.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
 gi|149822197|gb|EDM81588.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
          Length = 102

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT NC  C+ TDCV VCPV+CF+  +  L I PDECIDCG C PECPV+AI  +TE
Sbjct: 1  MTFVVTSNCQRCRFTDCVAVCPVECFHGDKEMLYIDPDECIDCGACVPECPVEAIYDETE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSA 90
            P    W++IN+  A++ P +   +  LP+A
Sbjct: 61 VPPEQIEWIEINAARASELPVVAETETPLPTA 92


>gi|254505412|ref|ZP_05117559.1| ferredoxin [Vibrio parahaemolyticus 16]
 gi|219551529|gb|EED28507.1| ferredoxin [Vibrio parahaemolyticus 16]
          Length = 107

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                ++++++N+E A  WP  T  K ++  A K +GV  K
Sbjct: 61  VPEDQKIYVELNAELAELWPVQTEVKPAMDEAEKWNGVPDK 101


>gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gi|300074015|gb|ADJ63414.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVT++CI CK+TDCV VCP+DCF EG NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
               L  + ++N+  + Q  W  IT  K  LP   K   V  K      P 
Sbjct: 61  LPATLAHFEQLNARLSRQPGWKPITQAKPPLPGHEKWKDVADKLPLLEQPQ 111


>gi|163803681|ref|ZP_02197543.1| ferredoxin [Vibrio sp. AND4]
 gi|159172520|gb|EDP57383.1| ferredoxin [Vibrio sp. AND4]
          Length = 107

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI + D 
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 60  EPGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  + L+ ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPDDQVLYKELNAELAEIWPVQTEIKPAMDEAEKWNGVPNKLD 103


>gi|283780772|ref|YP_003371527.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pirellula staleyi DSM 6068]
 gi|283439225|gb|ADB17667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
          staleyi DSM 6068]
          Length = 90

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 61/89 (68%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MT+VV + C  CKHTDCV VCP DCF+EG+  L I PD CIDC  C  ECPV+AI   D 
Sbjct: 1  MTHVVCKACFGCKHTDCVVVCPCDCFHEGDQMLYIDPDACIDCCACSSECPVEAIFIDDA 60

Query: 60 EPGLEL-WLKINSEYATQWPNITTKKESL 87
           P  +L ++++N+E  TQ P+IT KK+ L
Sbjct: 61 VPADQLAFIQLNAEMVTQTPSITQKKKPL 89


>gi|88608216|ref|YP_506219.1| ferredoxin [Neorickettsia sennetsu str. Miyayama]
 gi|88600385|gb|ABD45853.1| ferredoxin [Neorickettsia sennetsu str. Miyayama]
          Length = 139

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 66/122 (54%), Gaps = 23/122 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           M +VVTE C+ CK+TDCVEVCPVDCF+E   +L I PD CIDCGVC PECP++AI  D  
Sbjct: 1   MPHVVTEKCVKCKYTDCVEVCPVDCFHEAGEYLVIDPDVCIDCGVCVPECPIEAIISDET 60

Query: 59  -------------------TEPGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                              T+  L+    L  N E A + P I TKK+ L  A K   V 
Sbjct: 61  YIDGKSLGEIISVSDASLLTKKQLDARFMLVFNRERAAELPLIVTKKDPLDGAEKWAEVP 120

Query: 98  QK 99
            K
Sbjct: 121 NK 122


>gi|28897729|ref|NP_797334.1| ferredoxin [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838666|ref|ZP_01991333.1| ferredoxin-1 [Vibrio parahaemolyticus AQ3810]
 gi|260363840|ref|ZP_05776595.1| ferredoxin-1 [Vibrio parahaemolyticus K5030]
 gi|260876900|ref|ZP_05889255.1| ferredoxin-1 [Vibrio parahaemolyticus AN-5034]
 gi|260897958|ref|ZP_05906454.1| ferredoxin-1 [Vibrio parahaemolyticus Peru-466]
 gi|260902160|ref|ZP_05910555.1| ferredoxin-1 [Vibrio parahaemolyticus AQ4037]
 gi|28805942|dbj|BAC59218.1| ferredoxin [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747944|gb|EDM58810.1| ferredoxin-1 [Vibrio parahaemolyticus AQ3810]
 gi|308085488|gb|EFO35183.1| ferredoxin-1 [Vibrio parahaemolyticus Peru-466]
 gi|308093644|gb|EFO43339.1| ferredoxin-1 [Vibrio parahaemolyticus AN-5034]
 gi|308108295|gb|EFO45835.1| ferredoxin-1 [Vibrio parahaemolyticus AQ4037]
 gi|308113880|gb|EFO51420.1| ferredoxin-1 [Vibrio parahaemolyticus K5030]
          Length = 107

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQTIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|27367705|ref|NP_763232.1| ferredoxin [Vibrio vulnificus CMCP6]
 gi|37675831|ref|NP_936227.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|320157989|ref|YP_004190367.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Vibrio vulnificus
           MO6-24/O]
 gi|27359277|gb|AAO08222.1|AE016812_204 Ferredoxin [Vibrio vulnificus CMCP6]
 gi|37200370|dbj|BAC96197.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|319933301|gb|ADV88164.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Vibrio vulnificus
           MO6-24/O]
          Length = 107

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQVIYKELNAELAELWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|328473289|gb|EGF44137.1| ferredoxin [Vibrio parahaemolyticus 10329]
          Length = 107

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI + D 
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 60  EPGLELWLK-INSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            P  ++  K +N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQIIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|148973892|ref|ZP_01811425.1| ferredoxin [Vibrionales bacterium SWAT-3]
 gi|145965589|gb|EDK30837.1| ferredoxin [Vibrionales bacterium SWAT-3]
          Length = 107

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV +NCI CK+TD V VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVGDNCIQCKYTDFVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKPAMDDAEKWNGVPDKL 102


>gi|153834717|ref|ZP_01987384.1| ferredoxin-1 [Vibrio harveyi HY01]
 gi|156973800|ref|YP_001444707.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148868856|gb|EDL67920.1| ferredoxin-1 [Vibrio harveyi HY01]
 gi|156525394|gb|ABU70480.1| hypothetical protein VIBHAR_01510 [Vibrio harveyi ATCC BAA-1116]
          Length = 107

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +
Sbjct: 61  LPEDQVIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLD 103


>gi|73540321|ref|YP_294841.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha
          JMP134]
 gi|72117734|gb|AAZ59997.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha
          JMP134]
          Length = 109

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 62/96 (64%), Gaps = 2/96 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI  + D
Sbjct: 1  MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
                 ++ IN+E A +   +  +K   P +   D
Sbjct: 61 LPEDQRHFVAINAELARRPDWLPLRKAKGPLSDHAD 96


>gi|113866665|ref|YP_725154.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525441|emb|CAJ91786.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 109

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 4/99 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI  + D
Sbjct: 1  MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59 TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDG 95
                 ++ +N+E + +  W  +   K  +P   +  G
Sbjct: 61 LPEDQRHFIALNAELSRRADWLPLLKAKGPIPGHEQWAG 99


>gi|320103065|ref|YP_004178656.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Isosphaera pallida ATCC 43644]
 gi|319750347|gb|ADV62107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Isosphaera
          pallida ATCC 43644]
          Length = 98

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M +VVT  C  CK+TDCV VCPV+CFYEGE  L IHPDECIDC  C PECPV+AI   D 
Sbjct: 1  MAHVVTAPCFECKYTDCVVVCPVECFYEGEQMLYIHPDECIDCEACVPECPVEAIFHEDN 60

Query: 60 EPG-LELWLKINSEYATQWPNITTKKESLPSAA 91
           P   + ++ +N+E A   P IT  K  +   A
Sbjct: 61 VPADYKEFIALNAEKAPHLPVITQSKTPMEGPA 93


>gi|296122862|ref|YP_003630640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296015202|gb|ADG68441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 94

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MT+VV E C  CK+TDCV VCPV+CF EGE+ L IHP+ECIDC  C PECP  AI   D 
Sbjct: 1  MTHVVAEPCFNCKYTDCVVVCPVECFKEGESMLFIHPEECIDCEACVPECPPQAIFHEDN 60

Query: 60 EPGLEL-WLKINSEYATQWPNITTKKESL 87
           P     +LK+N+E + Q P IT KKE L
Sbjct: 61 LPAQWADYLKLNAEMSEQCPPITEKKEPL 89


>gi|238563896|ref|ZP_04610789.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|238519725|gb|EEP83193.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
          Length = 76

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 57/76 (75%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI  + +
Sbjct: 1  MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 61 -PG-LELWLKINSEYA 74
           PG  + +  +N+E A
Sbjct: 61 VPGDQQHFTALNAELA 76


>gi|254796711|ref|YP_003081547.1| ferredoxin [Neorickettsia risticii str. Illinois]
 gi|254589951|gb|ACT69313.1| ferredoxin [Neorickettsia risticii str. Illinois]
          Length = 139

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 69/135 (51%), Gaps = 24/135 (17%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           M +VVTE C+ CK+TDCVEVCPVDCF+E   +L I PD CIDCGVC PECP++AI  D  
Sbjct: 1   MPHVVTEKCLKCKYTDCVEVCPVDCFHEAGEYLVIDPDVCIDCGVCVPECPIEAIINDET 60

Query: 59  -------------------TEPGLELWLKI--NSEYATQWPNITTKKESLPSAAKMDGVK 97
                              T+  L+    +  N E A + P I  KK+ L  A K   V 
Sbjct: 61  YIDGKSLEEIISVSDTSLLTKKQLDARFMVVFNRERAAELPLIVMKKDPLDGAEKWAEVP 120

Query: 98  QKYEKYFSPNPGGKN 112
            K  +Y       +N
Sbjct: 121 NKI-RYIKQTESKEN 134


>gi|167563248|ref|ZP_02356164.1| ferredoxin [Burkholderia oklahomensis EO147]
          Length = 95

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLKINSEYAT 75
           + VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   D       ++ +N+E A 
Sbjct: 1   MAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAADDLPDDQTHFVALNAELAR 60

Query: 76  Q--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              WP IT KK +LP  A    VK K ++ 
Sbjct: 61  HPSWPRITGKKSALPDHATWTDVKGKLDQL 90


>gi|325110113|ref|YP_004271181.1| ferredoxin [Planctomyces brasiliensis DSM 5305]
 gi|324970381|gb|ADY61159.1| ferredoxin [Planctomyces brasiliensis DSM 5305]
          Length = 92

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M +VV + C  CK+TDCV VCPV+CFYEG+  L IHPDECIDC  C PECPV+AI   D 
Sbjct: 1  MPHVVCQPCFNCKYTDCVVVCPVECFYEGDKMLYIHPDECIDCEACVPECPVEAIFHEDN 60

Query: 60 EPG-LELWLKINSEYATQWPNITTKKESL 87
           P   + +++IN+E +   P IT KKE L
Sbjct: 61 VPDEWKEYVEINAEKSADTPVITEKKEPL 89


>gi|254514874|ref|ZP_05126935.1| RecA DNA recombination protein [gamma proteobacterium NOR5-3]
 gi|219677117|gb|EED33482.1| RecA DNA recombination protein [gamma proteobacterium NOR5-3]
          Length = 90

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 2/80 (2%)

Query: 18 VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
          +EVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E     +++L++N+E A 
Sbjct: 1  MEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDELPADQQVFLELNAELAE 60

Query: 76 QWPNITTKKESLPSAAKMDG 95
           WP IT  K +   A +  G
Sbjct: 61 VWPCITEMKPAPEDAEEWAG 80


>gi|300692275|ref|YP_003753270.1| ferredoxin II (FdII) [Ralstonia solanacearum PSI07]
 gi|299079335|emb|CBJ52007.1| Ferredoxin II (FdII) [Ralstonia solanacearum PSI07]
          Length = 103

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MTYVVT+ C  C++T+CV VCPV CF+  +    I PD CIDCG C P CPV AI  D  
Sbjct: 1  MTYVVTDLCTGCRYTECVTVCPVACFHLDDQMTYIDPDNCIDCGGCAPACPVGAIVADYL 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
                 WL IN E A Q P IT+K   LP A  +
Sbjct: 61 LPADKAAWLGINRERAAQTPVITSKLPPLPGAPDL 95


>gi|146337764|ref|YP_001202812.1| ferredoxin II (fragment) [Bradyrhizobium sp. ORS278]
 gi|146190570|emb|CAL74572.1| ferredoxin II (fragment) [Bradyrhizobium sp. ORS278]
          Length = 68

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 47/65 (72%)

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           +CEPECP DAIKPDTEPGLE WL +N+EYA  WPNIT KK+    A + DG   K+EKYF
Sbjct: 1   MCEPECPADAIKPDTEPGLEKWLGVNAEYAKSWPNITQKKDPPGDAKEHDGEDGKFEKYF 60

Query: 105 SPNPG 109
           S   G
Sbjct: 61  SSKAG 65


>gi|289675307|ref|ZP_06496197.1| ferredoxin I [Pseudomonas syringae pv. syringae FF5]
          Length = 48

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP 48
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEP
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEP 48


>gi|86750526|ref|YP_487022.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
 gi|86573554|gb|ABD08111.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
          Length = 101

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVT+NC  C++T+CV VCPV+CF+       I P+ CIDCG C P CPV AI PD  
Sbjct: 1  MTYVVTDNCKGCRYTECVTVCPVECFHVDAAMTYIDPENCIDCGGCAPACPVGAIAPDYR 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSA 90
               + W+ +N + A + P +T +   LP A
Sbjct: 61 LPAHQKFWIDVNRKRAAETPVLTARLPPLPGA 92


>gi|167570432|ref|ZP_02363306.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 93

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLKINSEYATQ- 76
           +CPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   D       ++ +N+E A   
Sbjct: 1   MCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAADDLPDDQTHFVALNAELARHP 60

Query: 77  -WPNITTKKESLPSAAKMDGVKQKYEKY 103
            WP IT KK +LP  A    VK K ++ 
Sbjct: 61  SWPRITGKKSALPDHATWTDVKGKLDQL 88


>gi|254184178|ref|ZP_04890768.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|184214709|gb|EDU11752.1| putative ferredoxin [Burkholderia pseudomallei 1655]
          Length = 70

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 46/55 (83%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI
Sbjct: 1  MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAI 55


>gi|226939570|ref|YP_002794643.1| 4Fe-4S ferredoxin, iron-sulfur binding [Laribacter hongkongensis
          HLHK9]
 gi|226714496|gb|ACO73634.1| 4Fe-4S ferredoxin, iron-sulfur binding [Laribacter hongkongensis
          HLHK9]
          Length = 112

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MT+VVTE CI CK+TDCVEVCPVDCF EG NFL I P ECIDC +C  ECPV AI    D
Sbjct: 1  MTHVVTEACIRCKYTDCVEVCPVDCFREGPNFLVIDPRECIDCVLCVAECPVGAIYADDD 60

Query: 59 TEPGLELWLKINSEYAT--QWPNITTKK 84
            P  + ++ +N+E A   +W  IT  +
Sbjct: 61 VPPDQQDFIALNAELAAHPEWRPITMAR 88


>gi|163839921|ref|YP_001624327.1| N-succinyldiaminopimelate aminotransferase [Renibacterium
          salmoninarum ATCC 33209]
 gi|162953397|gb|ABY22912.1| ferredoxin [Renibacterium salmoninarum ATCC 33209]
          Length = 539

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +TYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 41 VTYVIAQPCVDIKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 95


>gi|304309916|ref|YP_003809514.1| Ferrodoxin [gamma proteobacterium HdN1]
 gi|301795649|emb|CBL43848.1| Ferrodoxin [gamma proteobacterium HdN1]
          Length = 108

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VV +NCI CK+T C EVCPV+ F+EG NFL I P+ CIDC +C P C   +I  + D
Sbjct: 1   MAHVVLDNCINCKYTYCAEVCPVEAFHEGPNFLVIDPEACIDCMLCVPACITGSIMEERD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                   ++ N+  + QWP+I  +K + P A + D V  K
Sbjct: 61  VPHSQRSMVRANAMLSQQWPSIIERKPAFPDAEEWDKVPGK 101


>gi|32474247|ref|NP_867241.1| ferredoxin [Rhodopirellula baltica SH 1]
 gi|32444785|emb|CAD74787.1| ferredoxin [Rhodopirellula baltica SH 1]
          Length = 91

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 2/87 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEP 61
          +VV E C  CK+TDCV VCPV+CFYEGE  L IHP+ECIDC  C PECPV+AI   D  P
Sbjct: 2  HVVAEPCSGCKYTDCVVVCPVECFYEGEQMLYIHPEECIDCEACVPECPVEAIFHEDNLP 61

Query: 62 -GLELWLKINSEYATQWPNITTKKESL 87
             + ++++N+E + +   IT KKE L
Sbjct: 62 EEWQSYIELNAEMSEKTEVITEKKEPL 88


>gi|317125122|ref|YP_004099234.1| ferredoxin FdxA [Intrasporangium calvum DSM 43043]
 gi|315589210|gb|ADU48507.1| putative ferredoxin FdxA [Intrasporangium calvum DSM 43043]
          Length = 118

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+   CI  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIGSPCIDVKDRACVEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
            P LE +L+ N+++
Sbjct: 61 LPPDLEPYLQDNADF 75


>gi|207743547|ref|YP_002259939.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|206594945|emb|CAQ61872.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
          Length = 91

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D     + W+ IN+E A 
Sbjct: 1   MDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINAELAQ 60

Query: 76  Q-WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             WP+IT  K  LP A +   VK K E+Y 
Sbjct: 61  AGWPSITKTKSPLPEADQWKDVKDK-EQYL 89


>gi|328887086|emb|CCA60325.1| Ferredoxin [Streptomyces venezuelae ATCC 10712]
          Length = 97

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 2/86 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT+ CI CK+TDCV+VCPV CF+EG   L I+P+ECIDC  C  ECP +AI  D +
Sbjct: 1  MAYVVTDECIGCKYTDCVDVCPVSCFHEGPEMLYINPEECIDCNACVAECPPEAIWADVD 60

Query: 61 -PGLEL-WLKINSEYATQWPNITTKK 84
           P  +L W++IN E + ++P +   +
Sbjct: 61 LPEDKLQWIEINGEMSAKYPVLHESR 86


>gi|269961009|ref|ZP_06175378.1| Ferredoxin [Vibrio harveyi 1DA3]
 gi|269834228|gb|EEZ88318.1| Ferredoxin [Vibrio harveyi 1DA3]
          Length = 104

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1  MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKK 84
                ++ ++N+E A  WP  T  K
Sbjct: 61 LPEDQVIYKELNAELAEIWPVQTEVK 86


>gi|326331682|ref|ZP_08197970.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325950481|gb|EGD42533.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 536

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 44/68 (64%), Gaps = 10/68 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTYV+T++C  C    CVEVCPVDC + G +         L IHPDECIDCG CE  CPV
Sbjct: 1  MTYVITQSC--CNDASCVEVCPVDCIHPGPDEPGFGAAEMLYIHPDECIDCGACEDACPV 58

Query: 53 DAIKPDTE 60
          +AI PD E
Sbjct: 59 NAIFPDYE 66


>gi|188575948|ref|YP_001912877.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520400|gb|ACD58345.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 85

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLKINSEYATQWPNI 80
           +DCF+ G NFL I PDECIDC +CEPECP +AI P  D   G E ++ +N+E A  WP +
Sbjct: 1   MDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDDVPAGQEGFVALNAELAKVWPVL 60

Query: 81  TTKKESLPSAAKMDGVKQKY 100
           T ++E LP AA+ DG   K 
Sbjct: 61  TVRQEPLPDAAEWDGKPNKL 80


>gi|226228428|ref|YP_002762534.1| ferredoxin [Gemmatimonas aurantiaca T-27]
 gi|226091619|dbj|BAH40064.1| ferredoxin [Gemmatimonas aurantiaca T-27]
          Length = 87

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 49/69 (71%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+TE CI  K   CV+VCPVDC YEGE+ L I+PDECIDCG CEPECPV AI P+ +
Sbjct: 1  MPYVITEACISVKDRSCVDVCPVDCIYEGEDQLYINPDECIDCGACEPECPVTAIFPEED 60

Query: 61 PGLELWLKI 69
             +L   I
Sbjct: 61 VPTQLRSFI 69


>gi|41408137|ref|NP_960973.1| FdxC_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396492|gb|AAS04356.1| FdxC_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 108

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + D
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQW 77
            P    +L+IN+++ T+ 
Sbjct: 61 LPPEHSQYLQINADFFTEL 79


>gi|118462886|ref|YP_881360.1| ferredoxin [Mycobacterium avium 104]
 gi|254774861|ref|ZP_05216377.1| ferredoxin [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118164173|gb|ABK65070.1| ferredoxin [Mycobacterium avium 104]
          Length = 108

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + D
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQW 77
            P    +L+IN+++ T+ 
Sbjct: 61 LPPEHSQYLQINADFFTEL 79


>gi|299067165|emb|CBJ38361.1| Ferredoxin (fdxA) [Ralstonia solanacearum CMR15]
          Length = 91

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC  ECPV+AI  + D     + W+ IN++ A 
Sbjct: 1   MDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINADLAQ 60

Query: 76  Q-WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             WP+IT  K  LP A +   VK K E+Y 
Sbjct: 61  AGWPSITKTKTPLPDAEEWKDVKDK-EQYL 89


>gi|170726752|ref|YP_001760778.1| molydopterin dinucleotide-binding region [Shewanella woodyi ATCC
          51908]
 gi|169812099|gb|ACA86683.1| molydopterin dinucleotide-binding region [Shewanella woodyi ATCC
          51908]
          Length = 1299

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT  CI  KHT CV+VCPV+ F EGE  L I PDECI C  C  ECP  AI P+  
Sbjct: 1  MAYVVTGACIGDKHTSCVDVCPVNAFREGEEMLYIDPDECISCNACLTECPSLAIFPEAS 60

Query: 61 -PGLEL-WLKINSEYATQWPNITTKKESLP 88
           P  +L ++ IN+  + + P IT +    P
Sbjct: 61 VPEDQLQYININAIESKKHPVITERINKQP 90


>gi|330813498|ref|YP_004357737.1| ferredoxin [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486593|gb|AEA80998.1| ferredoxin [Candidatus Pelagibacter sp. IMCC9063]
          Length = 83

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 51/78 (65%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L I+PDECIDCGVCEPECP+ AI+PDT  G E  + +N + +  WP IT KK+ LP   
Sbjct: 1   MLVINPDECIDCGVCEPECPIGAIEPDTNDGAEKLVLLNKKLSETWPVITKKKDPLPDWE 60

Query: 92  KMDGVKQKYEKYFSPNPG 109
           K   ++ K +KY+S   G
Sbjct: 61  KFKDMENKLDKYYSEKAG 78


>gi|291191900|gb|ADD83007.1| PtnO9 [Streptomyces platensis]
          Length = 111

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  KH  C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDLKHKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|108805583|ref|YP_645520.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108766826|gb|ABG05708.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 79

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 45/60 (75%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+TE CI  K   CVEVCPVDC Y+G     I+P+ECIDCG CEPECPV+AI P+ E
Sbjct: 1  MTYVITEPCIGTKDQSCVEVCPVDCIYDGGEHFMINPEECIDCGACEPECPVEAIYPEDE 60


>gi|222102890|ref|YP_002539929.1| ferredoxin [Agrobacterium vitis S4]
 gi|221739491|gb|ACM40224.1| ferredoxin [Agrobacterium vitis S4]
          Length = 101

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MTYVVT+ C  C++T+CV VCPV+CF+  E    I PD CIDCG C P CPV AI     
Sbjct: 1  MTYVVTDQCSGCRYTECVTVCPVECFHIDEEMTYIDPDNCIDCGGCAPVCPVGAIHASYL 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + W++IN   A + P + ++   LP A
Sbjct: 61 LPADKQEWIEINRRRAAETPVVASRLPPLPGA 92


>gi|91774917|ref|YP_544673.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus
          flagellatus KT]
 gi|91708904|gb|ABE48832.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
          flagellatus KT]
          Length = 101

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT VVT+NC+ C+ T+CV  CPV  F  G   L I  + CIDCG C P+CPV AI  D +
Sbjct: 1  MTTVVTDNCLKCRFTECVTSCPVSAFRAGPEMLYIDSETCIDCGACVPKCPVQAIYEDLD 60

Query: 61 PGLEL--WLKINSEYATQWPNITTKKESLPSA 90
             ++  W+ IN+  A  WP IT K   L  A
Sbjct: 61 LPEDMLQWIDINASEAKLWPKITAKDVPLEGA 92


>gi|93006115|ref|YP_580552.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
 gi|92393793|gb|ABE75068.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
          Length = 67

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 47/61 (77%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + +++ +NCI CK+TDCV VC VD F+EG NFLAI P+ CIDC +C+PEC  +AI P ++
Sbjct: 5  IAFIIGDNCIKCKYTDCVAVCLVDAFFEGLNFLAIDPNSCIDCSLCDPECSANAITPVSK 64

Query: 61 P 61
          P
Sbjct: 65 P 65


>gi|121610433|ref|YP_998240.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555073|gb|ABM59222.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Verminephrobacter eiseniae EF01-2]
          Length = 113

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T  CI  K   CV+ CPVDC Y G   L IHPDECIDCGVCEP CP  AI  D  
Sbjct: 1  MAYVITTGCIDVKDGACVQCCPVDCIYTGGRTLYIHPDECIDCGVCEPACPTQAIYEDHR 60

Query: 61 --PGLELWLKINSEY 73
              L  +L IN E+
Sbjct: 61 LPAPLRPFLAINREF 75


>gi|189913023|ref|YP_001964912.1| Conserved ferredoxin oxidoreductase-like hypothetical protein
          [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|189913352|ref|YP_001964581.1| Ferredoxin [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Paris)']
 gi|167777699|gb|ABZ95999.1| Conserved ferredoxin oxidoreductase-like hypothetical protein
          [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|167781420|gb|ABZ99717.1| Ferredoxin [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Paris)']
          Length = 99

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 2/99 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C+ CK+T C  VCPV+ F+E  + L I PD CIDC  C+ ECP+DAI PD +
Sbjct: 1  MAYVVTEICVDCKYTSCAAVCPVEAFHEAPDTLYIDPDTCIDCNACQYECPIDAIFPDYD 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
               +  +++N++ A ++P I T K  L  A   D  K
Sbjct: 61 VPEKHKPSIEVNAKEANKFPVIVTTKPPLKGAKCSDPSK 99


>gi|302536699|ref|ZP_07289041.1| ferredoxin [Streptomyces sp. C]
 gi|302445594|gb|EFL17410.1| ferredoxin [Streptomyces sp. C]
          Length = 110

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           T    + + K N E+  +  +        P  A   G+ ++   + +  P   N 
Sbjct: 61  TPEEWKDYYKANVEFFDELGS--------PGGASKLGLIERDHPFVAALPADINA 107


>gi|254818693|ref|ZP_05223694.1| FdxC_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 108

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 8/82 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----- 55
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I     
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIFYEDD 60

Query: 56 KPDTEPGLELWLKINSEYATQW 77
           PD   G   +L+IN+++  + 
Sbjct: 61 LPDEHSG---YLQINADFFAEL 79


>gi|282854408|ref|ZP_06263745.1| putative ferredoxin [Propionibacterium acnes J139]
 gi|282583861|gb|EFB89241.1| putative ferredoxin [Propionibacterium acnes J139]
 gi|328906846|gb|EGG26612.1| putative ferredoxin [Propionibacterium sp. P08]
          Length = 106

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 60

Query: 60 EPG-LELWLKINSEYATQW 77
           PG  E +L IN+E+  + 
Sbjct: 61 LPGDQEKFLDINAEFFNEL 79


>gi|50842114|ref|YP_055341.1| ferredoxin [Propionibacterium acnes KPA171202]
 gi|289425779|ref|ZP_06427533.1| putative ferredoxin [Propionibacterium acnes SK187]
 gi|289426708|ref|ZP_06428436.1| putative ferredoxin [Propionibacterium acnes J165]
 gi|295130202|ref|YP_003580865.1| ferredoxin family protein [Propionibacterium acnes SK137]
 gi|50839716|gb|AAT82383.1| ferredoxin [Propionibacterium acnes KPA171202]
 gi|289153722|gb|EFD02429.1| putative ferredoxin [Propionibacterium acnes SK187]
 gi|289160034|gb|EFD08210.1| putative ferredoxin [Propionibacterium acnes J165]
 gi|291377123|gb|ADE00978.1| ferredoxin family protein [Propionibacterium acnes SK137]
 gi|313802321|gb|EFS43547.1| putative ferredoxin [Propionibacterium acnes HL110PA2]
 gi|313828097|gb|EFS65811.1| putative ferredoxin [Propionibacterium acnes HL063PA2]
 gi|313839087|gb|EFS76801.1| putative ferredoxin [Propionibacterium acnes HL086PA1]
 gi|314962320|gb|EFT06421.1| putative ferredoxin [Propionibacterium acnes HL082PA1]
 gi|315077406|gb|EFT49466.1| putative ferredoxin [Propionibacterium acnes HL053PA2]
 gi|327455186|gb|EGF01841.1| putative ferredoxin [Propionibacterium acnes HL092PA1]
 gi|332675037|gb|AEE71853.1| ferredoxin [Propionibacterium acnes 266]
          Length = 106

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 60

Query: 60 EPG-LELWLKINSEYATQW 77
           PG  E +L IN+E+  + 
Sbjct: 61 LPGDQEKFLDINAEFFNEL 79


>gi|296166244|ref|ZP_06848683.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898428|gb|EFG77995.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 7/99 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV++I  + D
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQW--PNITTK---KESLPSAAK 92
                 + + N+++  +   P   +K    E+ P+A K
Sbjct: 61 LPAEYSQYTQFNADFFAELGSPGGASKVGLTENDPAAVK 99


>gi|145222758|ref|YP_001133436.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium gilvum PYR-GCK]
 gi|145215244|gb|ABP44648.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium gilvum PYR-GCK]
          Length = 107

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++ T+
Sbjct: 61 VPEQWSAYTQINADFFTE 78


>gi|120405481|ref|YP_955310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119958299|gb|ABM15304.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium vanbaalenii PYR-1]
          Length = 107

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPDQWSAYTQINADFFVE 78


>gi|184200470|ref|YP_001854677.1| ferredoxin [Kocuria rhizophila DC2201]
 gi|183580700|dbj|BAG29171.1| 7Fe ferredoxin [Kocuria rhizophila DC2201]
          Length = 107

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACVEECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPEEWAEYYKANVEF 75


>gi|314925701|gb|EFS89532.1| putative ferredoxin [Propionibacterium acnes HL036PA3]
          Length = 106

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+A+   D 
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAVYYEDD 60

Query: 60 EPG-LELWLKINSEYATQW 77
           PG  E +L IN+E+  + 
Sbjct: 61 LPGDQEKFLDINAEFFNEL 79


>gi|258593114|emb|CBE69425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein (modular
          protein) [NC10 bacterium 'Dutch sediment']
          Length = 113

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YVV + CI  K   CV+VCPV+CFYEGE  L IHP+ECIDC  CEPECPV AI
Sbjct: 1  MAYVVADPCIGTKDHACVDVCPVECFYEGEELLFIHPEECIDCAACEPECPVAAI 55


>gi|296170897|ref|ZP_06852434.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894446|gb|EFG74190.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 118

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + CI      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPVDAI  + D
Sbjct: 1  MTYVIGKPCIDVMDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVDAIYYEDD 60

Query: 59 TEPGLELWLKINSE-YATQWPNITTKKESLPSAAKM 93
              L  +L  N+  +A   P       S   AAKM
Sbjct: 61 LPDELNPYLADNAAFFAETLPGRDAPLGSPGGAAKM 96


>gi|311898212|dbj|BAJ30620.1| putative 7Fe ferredoxin [Kitasatospora setae KM-6054]
          Length = 108

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|309813204|ref|ZP_07706925.1| ferredoxin [Dermacoccus sp. Ellin185]
 gi|308432800|gb|EFP56711.1| ferredoxin [Dermacoccus sp. Ellin185]
          Length = 107

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 58/102 (56%), Gaps = 9/102 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           T      + K N E+            S   AAKM  +K+ +
Sbjct: 61  TPEEWADYYKANVEFFDDL-------GSPGGAAKMGVIKKDH 95


>gi|329939592|ref|ZP_08288893.1| ferredoxin [Streptomyces griseoaurantiacus M045]
 gi|329301162|gb|EGG45057.1| ferredoxin [Streptomyces griseoaurantiacus M045]
          Length = 106

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|254381842|ref|ZP_04997205.1| ferredoxin [Streptomyces sp. Mg1]
 gi|194340750|gb|EDX21716.1| ferredoxin [Streptomyces sp. Mg1]
          Length = 108

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|325964023|ref|YP_004241929.1| ferredoxin [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470110|gb|ADX73795.1| ferredoxin [Arthrobacter phenanthrenivorans Sphe3]
          Length = 108

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPEEWADYYKANVEF 75


>gi|220913278|ref|YP_002488587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Arthrobacter chlorophenolicus A6]
 gi|219860156|gb|ACL40498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Arthrobacter chlorophenolicus A6]
          Length = 108

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPDEWADYYKANVEF 75


>gi|314922814|gb|EFS86645.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL001PA1]
          Length = 135

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           +TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 30  VTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 89

Query: 60  EPG-LELWLKINSEYATQW 77
            PG  E +L IN+E+  + 
Sbjct: 90  LPGDQEKFLDINAEFFNEL 108


>gi|314966245|gb|EFT10344.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA2]
 gi|314980771|gb|EFT24865.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA3]
 gi|315090258|gb|EFT62234.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA4]
 gi|315093409|gb|EFT65385.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL060PA1]
 gi|315102964|gb|EFT74940.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA2]
 gi|327327026|gb|EGE68807.1| ferredoxin [Propionibacterium acnes HL103PA1]
 gi|327331132|gb|EGE72872.1| ferredoxin [Propionibacterium acnes HL097PA1]
          Length = 135

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           +TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 30  VTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 89

Query: 60  EPG-LELWLKINSEYATQW 77
            PG  E +L IN+E+  + 
Sbjct: 90  LPGDQEKFLDINAEFFNEL 108


>gi|116671359|ref|YP_832292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrobacter sp. FB24]
 gi|116611468|gb|ABK04192.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Arthrobacter sp. FB24]
          Length = 108

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPDEWADYYKANVEF 75


>gi|313763939|gb|EFS35303.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA1]
 gi|313771530|gb|EFS37496.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL074PA1]
 gi|313808190|gb|EFS46664.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA2]
 gi|313811344|gb|EFS49058.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA1]
 gi|313812527|gb|EFS50241.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA1]
 gi|313814934|gb|EFS52648.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA1]
 gi|313818956|gb|EFS56670.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA2]
 gi|313820786|gb|EFS58500.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA1]
 gi|313822450|gb|EFS60164.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA2]
 gi|313825755|gb|EFS63469.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA1]
 gi|313830903|gb|EFS68617.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL007PA1]
 gi|313833330|gb|EFS71044.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL056PA1]
 gi|314914976|gb|EFS78807.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA4]
 gi|314918703|gb|EFS82534.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA1]
 gi|314920506|gb|EFS84337.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA3]
 gi|314932180|gb|EFS96011.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL067PA1]
 gi|314954553|gb|EFS98959.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA1]
 gi|314958650|gb|EFT02752.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA1]
 gi|314959746|gb|EFT03848.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA2]
 gi|314968248|gb|EFT12347.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA1]
 gi|314973790|gb|EFT17886.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA1]
 gi|314976441|gb|EFT20536.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL045PA1]
 gi|314979128|gb|EFT23222.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA2]
 gi|314983280|gb|EFT27372.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA1]
 gi|314986685|gb|EFT30777.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA2]
 gi|314989427|gb|EFT33518.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA3]
 gi|315080151|gb|EFT52127.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL078PA1]
 gi|315084033|gb|EFT56009.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA2]
 gi|315085234|gb|EFT57210.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA3]
 gi|315089149|gb|EFT61125.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA1]
 gi|315096565|gb|EFT68541.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL038PA1]
 gi|315098973|gb|EFT70949.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA2]
 gi|315100787|gb|EFT72763.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA1]
 gi|315107273|gb|EFT79249.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA1]
 gi|315108004|gb|EFT79980.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA2]
 gi|327326814|gb|EGE68597.1| ferredoxin [Propionibacterium acnes HL096PA2]
 gi|327330489|gb|EGE72236.1| ferredoxin [Propionibacterium acnes HL096PA3]
 gi|327442984|gb|EGE89638.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA1]
 gi|327445106|gb|EGE91760.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA2]
 gi|327446920|gb|EGE93574.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA2]
 gi|327450087|gb|EGE96741.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA3]
 gi|327455358|gb|EGF02013.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA2]
 gi|328752501|gb|EGF66117.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL020PA1]
 gi|328752753|gb|EGF66369.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA1]
 gi|328759326|gb|EGF72942.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA2]
 gi|328760188|gb|EGF73761.1| ferredoxin [Propionibacterium acnes HL099PA1]
          Length = 135

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           +TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 30  VTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 89

Query: 60  EPG-LELWLKINSEYATQW 77
            PG  E +L IN+E+  + 
Sbjct: 90  LPGDQEKFLDINAEFFNEL 108


>gi|256397063|ref|YP_003118627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Catenulispora acidiphila DSM 44928]
 gi|256363289|gb|ACU76786.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Catenulispora acidiphila DSM 44928]
          Length = 109

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+   C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIALPCVDVKDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEQWKDYYKANVEF 75


>gi|84494677|ref|ZP_00993796.1| ferredoxin [Janibacter sp. HTCC2649]
 gi|84384170|gb|EAQ00050.1| ferredoxin [Janibacter sp. HTCC2649]
          Length = 109

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDLKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPEQWADYYKANVEF 75


>gi|313836966|gb|EFS74680.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA2]
 gi|314929443|gb|EFS93274.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL044PA1]
 gi|314971472|gb|EFT15570.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA3]
          Length = 135

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           +TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 30  VTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 89

Query: 60  EPG-LELWLKINSEYATQW 77
            PG  E +L IN+E+  + 
Sbjct: 90  LPGDQEKFLDINAEFFNEL 108


>gi|260906738|ref|ZP_05915060.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 110

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + CI  K   CV+ CPVDC YEGE  L IHPDECIDCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCIDVKDKSCVDECPVDCIYEGERSLYIHPDECIDCGACEPVCPVEAI 55


>gi|313791594|gb|EFS39712.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA1]
          Length = 144

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 2/79 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           +TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI   D 
Sbjct: 39  VTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 98

Query: 60  EPG-LELWLKINSEYATQW 77
            PG  E +L IN+E+  + 
Sbjct: 99  LPGDQEKFLDINAEFFNEL 117


>gi|118469543|ref|YP_889369.1| ferredoxin [Mycobacterium smegmatis str. MC2 155]
 gi|118170830|gb|ABK71726.1| ferredoxin [Mycobacterium smegmatis str. MC2 155]
          Length = 107

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAI 55


>gi|182436183|ref|YP_001823902.1| putative ferredoxin [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|239944071|ref|ZP_04696008.1| putative ferredoxin [Streptomyces roseosporus NRRL 15998]
 gi|239990523|ref|ZP_04711187.1| putative ferredoxin [Streptomyces roseosporus NRRL 11379]
 gi|291447539|ref|ZP_06586929.1| 4Fe-4S binding domain containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|326776809|ref|ZP_08236074.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptomyces cf. griseus XylebKG-1]
 gi|178464699|dbj|BAG19219.1| putative ferredoxin [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|291350486|gb|EFE77390.1| 4Fe-4S binding domain containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|326657142|gb|EGE41988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptomyces cf. griseus XylebKG-1]
          Length = 106

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|21223505|ref|NP_629284.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|256785389|ref|ZP_05523820.1| ferredoxin [Streptomyces lividans TK24]
 gi|289769285|ref|ZP_06528663.1| ferredoxin [Streptomyces lividans TK24]
 gi|9967647|emb|CAC05765.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|289699484|gb|EFD66913.1| ferredoxin [Streptomyces lividans TK24]
          Length = 106

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|240171688|ref|ZP_04750347.1| ferredoxin FdxC [Mycobacterium kansasii ATCC 12478]
          Length = 108

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + +IN+++
Sbjct: 61 VPDQWTQYTQINADF 75


>gi|239738513|gb|ACS13712.1| PtmO9 [Streptomyces platensis]
          Length = 111

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDLKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|29829671|ref|NP_824305.1| ferredoxin [Streptomyces avermitilis MA-4680]
 gi|29606780|dbj|BAC70840.1| putative ferredoxin [Streptomyces avermitilis MA-4680]
          Length = 106

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|239982109|ref|ZP_04704633.1| ferredoxin [Streptomyces albus J1074]
 gi|291453957|ref|ZP_06593347.1| ferredoxin [Streptomyces albus J1074]
 gi|291356906|gb|EFE83808.1| ferredoxin [Streptomyces albus J1074]
          Length = 106

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|282865413|ref|ZP_06274465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
 gi|282559886|gb|EFB65436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
          Length = 106

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|290957604|ref|YP_003488786.1| ferredoxin [Streptomyces scabiei 87.22]
 gi|260647130|emb|CBG70229.1| ferredoxin [Streptomyces scabiei 87.22]
          Length = 105

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|33597853|ref|NP_885496.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33602756|ref|NP_890316.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33574282|emb|CAE38615.1| ferredoxin [Bordetella parapertussis]
 gi|33577198|emb|CAE35755.1| ferredoxin [Bordetella bronchiseptica RB50]
          Length = 90

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 2/86 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D       ++ +N E + 
Sbjct: 1   MDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEEDVPQDQVPFIALNVELSA 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKYE 101
           ++P+I+  K+ L  A + +GV+ K +
Sbjct: 61  EFPSISRAKKPLEDADQWNGVQDKLQ 86


>gi|239929111|ref|ZP_04686064.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|291437447|ref|ZP_06576837.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|302558592|ref|ZP_07310934.1| ferredoxin [Streptomyces griseoflavus Tu4000]
 gi|291340342|gb|EFE67298.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|302476210|gb|EFL39303.1| ferredoxin [Streptomyces griseoflavus Tu4000]
          Length = 105

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|118470782|ref|YP_885518.1| ferredoxin FdxA [Mycobacterium smegmatis str. MC2 155]
 gi|118172069|gb|ABK72965.1| putative ferredoxin FdxA [Mycobacterium smegmatis str. MC2 155]
          Length = 114

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+   C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIGRPCVDVKDRACVDECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKM 93
              L+ + + N+++ T   P       S   AAK+
Sbjct: 61 LPEDLQPYQEENAKFFTDVLPGRAQPLGSPGGAAKL 96


>gi|88856142|ref|ZP_01130803.1| ferredoxin [marine actinobacterium PHSC20C1]
 gi|88814710|gb|EAR24571.1| ferredoxin [marine actinobacterium PHSC20C1]
          Length = 111

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 58/115 (50%), Gaps = 8/115 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYV+ + C+  K   C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1   MTYVIAQPCVDLKDRACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + K N E+          + S P  A   GV  K        P G  +
Sbjct: 61  LPDKWADYYKANVEF------FDLLEVSSPGGAAKVGVIHKDHALIVALPEGGGS 109


>gi|307332364|ref|ZP_07611435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
 gi|297157503|gb|ADI07215.1| ferredoxin [Streptomyces bingchenggensis BCW-1]
 gi|306881977|gb|EFN13092.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
          Length = 108

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDLKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|111025066|ref|YP_707486.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|110824045|gb|ABG99328.1| ferredoxin [Rhodococcus jostii RHA1]
          Length = 128

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYV+ E CI      CVE CPVDC YEG   L IHPDECIDCG CEP CPV+AI  + D
Sbjct: 1   MTYVIAEPCIDVMDRACVEECPVDCIYEGGRSLYIHPDECIDCGACEPVCPVEAIYYEAD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E +   N+ +        +    +P  A   G      +  S +P
Sbjct: 61  LPARWEAFTDDNARFFHSPLPGASAALGMPGGAGKLGRLAADTELVSGHP 110


>gi|219848770|ref|YP_002463203.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus aggregans DSM 9485]
 gi|219543029|gb|ACL24767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus aggregans DSM 9485]
          Length = 78

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 43/58 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+TE CI  K   CV VCPVDC YEG++   I+PDECIDCG CEPECPV+AI  D
Sbjct: 1  MPYVITEPCIGTKDASCVAVCPVDCIYEGDDQYYINPDECIDCGACEPECPVEAIFAD 58


>gi|24217168|ref|NP_714651.1| ferredoxin [Leptospira interrogans serovar Lai str. 56601]
 gi|45655667|ref|YP_003476.1| ferredoxin [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
 gi|24202210|gb|AAN51666.1| hypothetical protein LB_107 [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45602638|gb|AAS72113.1| ferredoxin [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
          Length = 99

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C  CK+T C  VCPV+ F EG + L I P  CIDC  C PECPV+AI PD E
Sbjct: 1  MAYVVTEPCRNCKYTYCAAVCPVEAFREGTDCLYIEPSVCIDCNKCRPECPVEAIYPDYE 60

Query: 61 PGL--ELWLKINSEYATQWPNITTKKESL 87
                 W+++N++ A  +P I   K  L
Sbjct: 61 VPFVWRDWIEVNAQKAKCYPTILDVKIPL 89


>gi|119961114|ref|YP_948508.1| ferredoxin [Arthrobacter aurescens TC1]
 gi|119947973|gb|ABM06884.1| ferredoxin [Arthrobacter aurescens TC1]
          Length = 132

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          +TYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 25 VTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 84

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 85 TPEEWADYYKANVEF 99


>gi|118618156|ref|YP_906488.1| ferredoxin FdxC_1 [Mycobacterium ulcerans Agy99]
 gi|183983410|ref|YP_001851701.1| ferredoxin FdxC_1 [Mycobacterium marinum M]
 gi|118570266|gb|ABL05017.1| ferredoxin FdxC_1 [Mycobacterium ulcerans Agy99]
 gi|183176736|gb|ACC41846.1| ferredoxin FdxC_1 [Mycobacterium marinum M]
          Length = 108

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + D
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQW 77
                 + +IN ++ ++ 
Sbjct: 61 LPAEYSGYTQINVDFFSEL 79


>gi|15608317|ref|NP_215693.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Rv]
 gi|15840620|ref|NP_335657.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31792371|ref|NP_854864.1| ferredoxin FdxC [Mycobacterium bovis AF2122/97]
 gi|121637109|ref|YP_977332.1| putative ferredoxin fdxC [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148660965|ref|YP_001282488.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Ra]
 gi|167966778|ref|ZP_02549055.1| ferredoxin fdxC [Mycobacterium tuberculosis H37Ra]
 gi|215403016|ref|ZP_03415197.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|215430060|ref|ZP_03427979.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|215445354|ref|ZP_03432106.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|218752871|ref|ZP_03531667.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|219557068|ref|ZP_03536144.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|224989582|ref|YP_002644269.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799779|ref|YP_003032780.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 1435]
 gi|254231445|ref|ZP_04924772.1| ferredoxin fdxC [Mycobacterium tuberculosis C]
 gi|254364080|ref|ZP_04980126.1| ferredoxin fdxC [Mycobacterium tuberculosis str. Haarlem]
 gi|254550183|ref|ZP_05140630.1| ferredoxin fdxC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186110|ref|ZP_05763584.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|260200225|ref|ZP_05767716.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|260204430|ref|ZP_05771921.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289442611|ref|ZP_06432355.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|289446767|ref|ZP_06436511.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|289555034|ref|ZP_06444244.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 605]
 gi|289569181|ref|ZP_06449408.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|289573837|ref|ZP_06454064.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289749720|ref|ZP_06509098.1| LOW QUALITY PROTEIN: ferredoxin fdxC [Mycobacterium tuberculosis
          T92]
 gi|289753247|ref|ZP_06512625.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|289757273|ref|ZP_06516651.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|289761323|ref|ZP_06520701.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|294993365|ref|ZP_06799056.1| ferredoxin fdxC [Mycobacterium tuberculosis 210]
 gi|297633725|ref|ZP_06951505.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 4207]
 gi|297730711|ref|ZP_06959829.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN R506]
 gi|306775348|ref|ZP_07413685.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu001]
 gi|306781745|ref|ZP_07420082.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu002]
 gi|306783896|ref|ZP_07422218.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu003]
 gi|306788262|ref|ZP_07426584.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu004]
 gi|306792587|ref|ZP_07430889.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu005]
 gi|306796993|ref|ZP_07435295.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu006]
 gi|306802871|ref|ZP_07439539.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu008]
 gi|306807053|ref|ZP_07443721.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu007]
 gi|306967258|ref|ZP_07479919.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu009]
 gi|306971442|ref|ZP_07484103.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu010]
 gi|307079169|ref|ZP_07488339.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu011]
 gi|307083730|ref|ZP_07492843.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu012]
 gi|313658042|ref|ZP_07814922.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN V2475]
 gi|2695961|emb|CAA15854.1| PROBABLE FERREDOXIN FDXC [Mycobacterium tuberculosis H37Rv]
 gi|13880802|gb|AAK45471.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31617959|emb|CAD94071.1| PROBABLE FERREDOXIN FDXC [Mycobacterium bovis AF2122/97]
 gi|121492756|emb|CAL71227.1| Probable ferredoxin fdxC [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|124600504|gb|EAY59514.1| ferredoxin fdxC [Mycobacterium tuberculosis C]
 gi|134149594|gb|EBA41639.1| ferredoxin fdxC [Mycobacterium tuberculosis str. Haarlem]
 gi|148505117|gb|ABQ72926.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Ra]
 gi|224772695|dbj|BAH25501.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321282|gb|ACT25885.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 1435]
 gi|289415530|gb|EFD12770.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|289419725|gb|EFD16926.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|289439666|gb|EFD22159.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 605]
 gi|289538268|gb|EFD42846.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289542935|gb|EFD46583.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|289690307|gb|EFD57736.1| LOW QUALITY PROTEIN: ferredoxin fdxC [Mycobacterium tuberculosis
          T92]
 gi|289693834|gb|EFD61263.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|289708829|gb|EFD72845.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|289712837|gb|EFD76849.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|308216149|gb|EFO75548.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu001]
 gi|308325500|gb|EFP14351.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu002]
 gi|308331334|gb|EFP20185.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu003]
 gi|308335151|gb|EFP24002.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu004]
 gi|308338958|gb|EFP27809.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu005]
 gi|308342625|gb|EFP31476.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu006]
 gi|308346514|gb|EFP35365.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu007]
 gi|308350434|gb|EFP39285.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu008]
 gi|308355081|gb|EFP43932.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu009]
 gi|308359036|gb|EFP47887.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu010]
 gi|308362963|gb|EFP51814.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu011]
 gi|308366614|gb|EFP55465.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu012]
 gi|326902801|gb|EGE49734.1| ferredoxin fdxC [Mycobacterium tuberculosis W-148]
 gi|328459524|gb|AEB04947.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 4207]
          Length = 108

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + +IN+++
Sbjct: 61 VPEQWSHYTQINADF 75


>gi|302542741|ref|ZP_07295083.1| ferredoxin [Streptomyces hygroscopicus ATCC 53653]
 gi|302460359|gb|EFL23452.1| ferredoxin [Streptomyces himastatinicus ATCC 53653]
          Length = 136

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           +TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 29  VTYVIAQPCVDLKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 88

Query: 59  TEPGLELWLKINSEY 73
           T    + + K N E+
Sbjct: 89  TPEEWKDYYKANVEF 103


>gi|328884828|emb|CCA58067.1| ferredoxin [Streptomyces venezuelae ATCC 10712]
          Length = 106

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|315443225|ref|YP_004076104.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|315261528|gb|ADT98269.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 107

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + +IN+++
Sbjct: 61 VPDQWSSYTQINADF 75


>gi|308177963|ref|YP_003917369.1| 4Fe-4S ferredoxin domain-containing protein [Arthrobacter
          arilaitensis Re117]
 gi|307745426|emb|CBT76398.1| 4Fe-4S ferredoxin domain-containing protein [Arthrobacter
          arilaitensis Re117]
          Length = 107

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ + C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAQPCVDVKDKACVEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|269925717|ref|YP_003322340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
 gi|269789377|gb|ACZ41518.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
          Length = 81

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 52/77 (67%), Gaps = 4/77 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP- 57
          M YV+TE CI  K   CVEVCPVDC Y  +      IHPDECIDCG CEPECPV AI P 
Sbjct: 1  MPYVITEPCIGVKDASCVEVCPVDCIYTDDEAPMYYIHPDECIDCGACEPECPVSAIYPE 60

Query: 58 DTEP-GLELWLKINSEY 73
          D+ P   + +++IN++Y
Sbjct: 61 DSVPEQWQHYIQINADY 77


>gi|254388886|ref|ZP_05004117.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294814826|ref|ZP_06773469.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|326443204|ref|ZP_08217938.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|197702604|gb|EDY48416.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294327425|gb|EFG09068.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
          Length = 105

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGRRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|15827784|ref|NP_302047.1| ferredoxin [Mycobacterium leprae TN]
 gi|221230261|ref|YP_002503677.1| ferredoxin [Mycobacterium leprae Br4923]
 gi|13093336|emb|CAC30439.1| ferredoxin [Mycobacterium leprae]
 gi|219933368|emb|CAR71583.1| ferredoxin [Mycobacterium leprae Br4923]
          Length = 108

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN ++  +
Sbjct: 61 VPEQWSHYTQINVDFFVE 78


>gi|215410806|ref|ZP_03419614.1| ferredoxin fdxC [Mycobacterium tuberculosis 94_M4241A]
 gi|298524675|ref|ZP_07012084.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|298494469|gb|EFI29763.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
          Length = 108

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + +IN+++
Sbjct: 61 VPEQWSHYTQINADF 75


>gi|318058410|ref|ZP_07977133.1| ferredoxin [Streptomyces sp. SA3_actG]
 gi|318080441|ref|ZP_07987773.1| ferredoxin [Streptomyces sp. SA3_actF]
          Length = 106

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|117929063|ref|YP_873614.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acidothermus cellulolyticus 11B]
 gi|117649526|gb|ABK53628.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Acidothermus cellulolyticus 11B]
          Length = 108

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY++ + C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYIIAQPCVDVKDRACVDECPVDCIYEGQRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
               + + K+N E+
Sbjct: 61 LPDQWKDYYKVNVEF 75


>gi|118616772|ref|YP_905104.1| ferredoxin FdxC [Mycobacterium ulcerans Agy99]
 gi|118568882|gb|ABL03633.1| ferredoxin FdxC [Mycobacterium ulcerans Agy99]
          Length = 108

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + +IN+++
Sbjct: 61 VPEQWSQYTQINADF 75


>gi|226359497|ref|YP_002777274.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226237981|dbj|BAH48329.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 128

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E CI      CVE CPVDC YEG   L IHPDECIDCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCIDVLDRACVEECPVDCIYEGGRSLYIHPDECIDCGACEPVCPVEAI 55


>gi|320008744|gb|ADW03594.1| putative ferredoxin [Streptomyces flavogriseus ATCC 33331]
          Length = 106

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|254818770|ref|ZP_05223771.1| ferredoxin [Mycobacterium intracellulare ATCC 13950]
          Length = 108

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPDQWSQYTQINADFFAE 78


>gi|183984247|ref|YP_001852538.1| ferredoxin FdxC [Mycobacterium marinum M]
 gi|183177573|gb|ACC42683.1| ferredoxin FdxC [Mycobacterium marinum M]
          Length = 108

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPEQWSQYTQINADFFAE 78


>gi|41408705|ref|NP_961541.1| FdxC_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118465894|ref|YP_880561.1| ferredoxin [Mycobacterium avium 104]
 gi|41397063|gb|AAS04924.1| FdxC_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167181|gb|ABK68078.1| ferredoxin [Mycobacterium avium 104]
          Length = 108

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPDQWSQYTQINADFFAE 78


>gi|260904087|ref|ZP_05912409.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 107

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY++ + C+  K   CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYIIAQPCVDLKDKACVDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPEEWSEYYKANVEF 75


>gi|296169415|ref|ZP_06851037.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895917|gb|EFG75610.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPEQWSQYTQINADFFVE 78


>gi|297202177|ref|ZP_06919574.1| ferredoxin [Streptomyces sviceus ATCC 29083]
 gi|197713616|gb|EDY57650.1| ferredoxin [Streptomyces sviceus ATCC 29083]
          Length = 105

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPDEWKDYYKANVEF 75


>gi|254774193|ref|ZP_05215709.1| ferredoxin [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 108

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPDQWSQYTQINADFFAE 78


>gi|296170063|ref|ZP_06851666.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895273|gb|EFG74983.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 113

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          +TY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 6  VTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 65

Query: 59 TEPGLELWLKINSEYATQ 76
                 + +IN+++ T+
Sbjct: 66 VPDQWSQYTQINADFFTE 83


>gi|297192269|ref|ZP_06909667.1| ferredoxin [Streptomyces pristinaespiralis ATCC 25486]
 gi|190333637|gb|ACE73826.1| putative ferredoxin [Streptomyces peucetius ATCC 27952]
 gi|297151282|gb|EFH31065.1| ferredoxin [Streptomyces pristinaespiralis ATCC 25486]
          Length = 106

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T    + + K N E+
Sbjct: 61 TPEEWKDYYKANVEF 75


>gi|294631226|ref|ZP_06709786.1| ferredoxin [Streptomyces sp. e14]
 gi|292834559|gb|EFF92908.1| ferredoxin [Streptomyces sp. e14]
          Length = 143

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 38 VTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAI 92


>gi|159896706|ref|YP_001542953.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889745|gb|ABX02825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Herpetosiphon aurantiacus ATCC 23779]
          Length = 77

 Score = 77.0 bits (188), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 42/55 (76%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ E C+  K + CV+VCPVDC YEGE+   I+PDECIDCG CEPECPV AI
Sbjct: 1  MAYVIAEPCVGTKDSACVKVCPVDCIYEGEDQYYINPDECIDCGACEPECPVSAI 55


>gi|311111810|ref|YP_003983032.1| ferredoxin [Rothia dentocariosa ATCC 17931]
 gi|310943304|gb|ADP39598.1| ferredoxin [Rothia dentocariosa ATCC 17931]
          Length = 160

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           MTYV+   C+  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI   D 
Sbjct: 55  MTYVIALPCVDVKDRACVEECPVDCIYEGDRTLYIHPDECVDCGACEPVCPVEAIYYEDD 114

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
            P  E W    SEY T          S   AAKM
Sbjct: 115 VP--EEW----SEYITANAEFFDDLGSPGGAAKM 142


>gi|284033401|ref|YP_003383332.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Kribbella flavida DSM 17836]
 gi|283812694|gb|ADB34533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
          flavida DSM 17836]
          Length = 108

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDLKDLACVEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|240170645|ref|ZP_04749304.1| ferredoxin FdxA_1 [Mycobacterium kansasii ATCC 12478]
          Length = 118

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIGKPCIDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKM 93
              LE +   N+ + T+  P       S   AAK+
Sbjct: 61 LPAELEPYRADNAAFFTETLPGRDEPLGSPGGAAKI 96


>gi|332671395|ref|YP_004454403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Cellulomonas fimi ATCC 484]
 gi|332340433|gb|AEE47016.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Cellulomonas fimi ATCC 484]
          Length = 108

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|168703585|ref|ZP_02735862.1| ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 103

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M +VVT NC  CK+TDC  VCPV+CFY+ E  L I P++CIDC  C PECPV+AI  +P+
Sbjct: 1  MPHVVTSNCNDCKYTDCCVVCPVECFYQDETMLYIDPEDCIDCEACVPECPVEAIYSEPN 60

Query: 59 TEPGLELWLKINSEYAT 75
                 ++++N+E A+
Sbjct: 61 VPSQWSSFIQLNAERAS 77


>gi|239918039|ref|YP_002957597.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|281415782|ref|ZP_06247524.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|289705240|ref|ZP_06501639.1| putative ferredoxin [Micrococcus luteus SK58]
 gi|239839246|gb|ACS31043.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|289557990|gb|EFD51282.1| putative ferredoxin [Micrococcus luteus SK58]
          Length = 108

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIALPCVDVKDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPDEWAEYYKANVEF 75


>gi|296393263|ref|YP_003658147.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Segniliparus rotundus DSM 44985]
 gi|296180410|gb|ADG97316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Segniliparus rotundus DSM 44985]
          Length = 108

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVMDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|296128848|ref|YP_003636098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Cellulomonas flavigena DSM 20109]
 gi|296020663|gb|ADG73899.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Cellulomonas flavigena DSM 20109]
          Length = 108

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|296119440|ref|ZP_06837998.1| ferredoxin [Corynebacterium ammoniagenes DSM 20306]
 gi|295967323|gb|EFG80590.1| ferredoxin [Corynebacterium ammoniagenes DSM 20306]
          Length = 107

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E WL+ N   A  + ++ +
Sbjct: 61 VPDE-WLEYNDANAAFFDDLGS 81


>gi|295836680|ref|ZP_06823613.1| ferredoxin [Streptomyces sp. SPB74]
 gi|302521743|ref|ZP_07274085.1| ferredoxin [Streptomyces sp. SPB78]
 gi|295826155|gb|EDY46645.2| ferredoxin [Streptomyces sp. SPB74]
 gi|302430638|gb|EFL02454.1| ferredoxin [Streptomyces sp. SPB78]
          Length = 137

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           +TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 32  VTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 91

Query: 59  TEPGLELWLKINSEY 73
           T    + + K N E+
Sbjct: 92  TPEEWKDYYKANVEF 106


>gi|320094299|ref|ZP_08026090.1| ferredoxin [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978765|gb|EFW10317.1| ferredoxin [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 114

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 10/100 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV+ CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  + D
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                 +L+ N+++ ++  +        P  A+  GV++
Sbjct: 61 LPDEWSDYLRANADFFSELGS--------PGGAQRTGVQE 92


>gi|108800994|ref|YP_641191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119870135|ref|YP_940087.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. KMS]
 gi|126436831|ref|YP_001072522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|108771413|gb|ABG10135.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119696224|gb|ABL93297.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. KMS]
 gi|126236631|gb|ABO00032.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 107

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAI 55


>gi|296270986|ref|YP_003653618.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermobispora bispora DSM 43833]
 gi|296093773|gb|ADG89725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobispora bispora DSM 43833]
          Length = 108

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+      CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVLDKACVEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAI 55


>gi|255326955|ref|ZP_05368031.1| ferredoxin [Rothia mucilaginosa ATCC 25296]
 gi|283457664|ref|YP_003362249.1| ferredoxin [Rothia mucilaginosa DY-18]
 gi|255296172|gb|EET75513.1| ferredoxin [Rothia mucilaginosa ATCC 25296]
 gi|283133664|dbj|BAI64429.1| ferredoxin [Rothia mucilaginosa DY-18]
          Length = 106

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI   D 
Sbjct: 1  MTYVIALPCVDVKDRACVEECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           P  E W    SEY +   +      S   AAK+
Sbjct: 61 VP--EEW----SEYVSANADFFDDLGSPGGAAKL 88


>gi|300741914|ref|ZP_07071935.1| ferredoxin [Rothia dentocariosa M567]
 gi|300381099|gb|EFJ77661.1| ferredoxin [Rothia dentocariosa M567]
          Length = 106

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MTYV+   C+  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI   D 
Sbjct: 1  MTYVIALPCVDVKDRACVEECPVDCIYEGDRTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           P  E W    SEY T          S   AAKM
Sbjct: 61 VP--EEW----SEYITANAEFFDDLGSPGGAAKM 88


>gi|311740712|ref|ZP_07714539.1| ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304232|gb|EFQ80308.1| ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 107

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDIMDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E WL  N   A  + ++ +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGS 81


>gi|119715428|ref|YP_922393.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119536089|gb|ABL80706.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 108

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+++ C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVISQPCVDVKDRACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|257054691|ref|YP_003132523.1| ferredoxin [Saccharomonospora viridis DSM 43017]
 gi|256584563|gb|ACU95696.1| ferredoxin [Saccharomonospora viridis DSM 43017]
          Length = 106

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVLDKSCIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAI 55


>gi|315606086|ref|ZP_07881117.1| ferredoxin [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312368|gb|EFU60454.1| ferredoxin [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 113

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 10/99 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV+ CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  + D
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERTLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                 +L+ N+++  Q           P  A+  GV+
Sbjct: 61 LPDEWSDYLRANADFFNQL--------GSPGGAQKTGVQ 91


>gi|227832808|ref|YP_002834515.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|255324435|ref|ZP_05365552.1| ferredoxin [Corynebacterium tuberculostearicum SK141]
 gi|262182703|ref|ZP_06042124.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|227453824|gb|ACP32577.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|255298341|gb|EET77641.1| ferredoxin [Corynebacterium tuberculostearicum SK141]
          Length = 107

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRGCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E WL  N   A  + ++ +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGS 81


>gi|117927707|ref|YP_872258.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acidothermus cellulolyticus 11B]
 gi|117648170|gb|ABK52272.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Acidothermus cellulolyticus 11B]
          Length = 117

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCIDVMDRACVEECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAI 55


>gi|302553940|ref|ZP_07306282.1| ferredoxin [Streptomyces viridochromogenes DSM 40736]
 gi|302471558|gb|EFL34651.1| ferredoxin [Streptomyces viridochromogenes DSM 40736]
          Length = 134

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           +TYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 30  VTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 89

Query: 59  TEPGLELWLKINSEY 73
           T    + + K N E+
Sbjct: 90  TPEEWKDYYKANVEF 104


>gi|229819624|ref|YP_002881150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Beutenbergia cavernae DSM 12333]
 gi|229565537|gb|ACQ79388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Beutenbergia cavernae DSM 12333]
          Length = 105

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDIKDKACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|148822393|ref|YP_001287147.1| ferredoxin fdxC [Mycobacterium tuberculosis F11]
 gi|289744922|ref|ZP_06504300.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|148720920|gb|ABR05545.1| ferredoxin fdxC [Mycobacterium tuberculosis F11]
 gi|289685450|gb|EFD52938.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|323720340|gb|EGB29436.1| ferredoxin fdxC [Mycobacterium tuberculosis CDC1551A]
          Length = 126

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          +TY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 19 VTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 78

Query: 59 TEPGLELWLKINSEY 73
                 + +IN+++
Sbjct: 79 VPEQWSHYTQINADF 93


>gi|111017434|ref|YP_700406.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110816964|gb|ABG92248.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 542

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YVVT+NC  C    CV VCPVDC         Y+    L I P  CIDCG C   CPV
Sbjct: 1  MAYVVTQNC--CNDATCVAVCPVDCIHPTPAEREYQRTEMLYIDPGACIDCGACADVCPV 58

Query: 53 DAIKPDTEPG--LELWLKINSEYATQWP 78
          DAI P   P   ++ + +IN+EY  + P
Sbjct: 59 DAIVPGDAPAPDIDRYREINAEYFQRNP 86


>gi|258653795|ref|YP_003202951.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nakamurella multipartita DSM 44233]
 gi|258557020|gb|ACV79962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
          multipartita DSM 44233]
          Length = 114

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV AI  + D
Sbjct: 1  MTYVIAEPCIDVLDRACVEECPVDCIYEGARALYIHPDECVDCGACEPVCPVQAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
               E +   N+ + T      ++  + P  A   G
Sbjct: 61 VPNQWEAFTDDNARFFTDTLPGRSQPVASPGGATTIG 97


>gi|227487879|ref|ZP_03918195.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542520|ref|ZP_03972569.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092206|gb|EEI27518.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181718|gb|EEI62690.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 107

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + E C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAEPCVDVKDKACVEECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E W+  N   A  + ++ +
Sbjct: 61 VPDE-WIDYNEANAAFFEDLGS 81


>gi|148654468|ref|YP_001274673.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Roseiflexus sp. RS-1]
 gi|156740275|ref|YP_001430404.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Roseiflexus castenholzii DSM 13941]
 gi|148566578|gb|ABQ88723.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Roseiflexus sp. RS-1]
 gi|156231603|gb|ABU56386.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Roseiflexus
          castenholzii DSM 13941]
          Length = 78

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ E CI  K   CV VCPVDC YEGE+   I+P+ECIDCG CEPECPV+AI  D
Sbjct: 1  MAYIIAEPCIGVKDASCVAVCPVDCIYEGEDQYYINPEECIDCGACEPECPVEAIFAD 58


>gi|269955770|ref|YP_003325559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Xylanimonas cellulosilytica DSM 15894]
 gi|269304451|gb|ACZ30001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 105

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|126436658|ref|YP_001072349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|126236458|gb|ABN99858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 548

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+NC  CK   CV VCPVDC         + G   L I P+ CIDCG C  ECPV
Sbjct: 1  MAYVITQNC--CKDASCVPVCPVDCIRPAGEAGQFVGTEMLYIDPETCIDCGACLEECPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          DAI  D +     E + +IN+ Y  + P
Sbjct: 59 DAIYYDEDLPADQERFREINASYFQRHP 86


>gi|269795884|ref|YP_003315339.1| ferredoxin [Sanguibacter keddieii DSM 10542]
 gi|269098069|gb|ACZ22505.1| ferredoxin [Sanguibacter keddieii DSM 10542]
          Length = 105

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|88855520|ref|ZP_01130184.1| ferredoxin [marine actinobacterium PHSC20C1]
 gi|88815427|gb|EAR25285.1| ferredoxin [marine actinobacterium PHSC20C1]
          Length = 110

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 10/97 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---- 56
          MTYV+ + C+  K   C++ CPVDC YEG   L IHPDEC+DCG C+P CPV+AI     
Sbjct: 1  MTYVIAQPCVDVKDKACIDACPVDCIYEGGRSLYIHPDECVDCGACDPVCPVEAIYYVDD 60

Query: 57 -PD-----TEPGLELWLKINSEYATQWPNITTKKESL 87
           PD     T+  ++ + ++ S         T + +SL
Sbjct: 61 VPDKWGEYTQANVDFFSELGSPMGAAALGNTGRDDSL 97


>gi|240168739|ref|ZP_04747398.1| FdxC_1 [Mycobacterium kansasii ATCC 12478]
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I   D 
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 EPG-LELWLKINSEYATQ 76
           PG    + +IN+++  +
Sbjct: 61 LPGEWNEYQQINADFFAE 78


>gi|269793446|ref|YP_003312901.1| ferredoxin [Sanguibacter keddieii DSM 10542]
 gi|269095631|gb|ACZ20067.1| ferredoxin [Sanguibacter keddieii DSM 10542]
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|271969626|ref|YP_003343822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptosporangium roseum DSM 43021]
 gi|270512801|gb|ACZ91079.1| 4Fe-4S ferredoxin iron-sulfur binding domain- containing protein
          [Streptosporangium roseum DSM 43021]
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+      C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVLDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAI 55


>gi|284989663|ref|YP_003408217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Geodermatophilus obscurus DSM 43160]
 gi|284062908|gb|ADB73846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Geodermatophilus obscurus DSM 43160]
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+T+ C+      C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVITQACVDVLDKACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|317506366|ref|ZP_07964177.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
 gi|316255329|gb|EFV14588.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
          Length = 108

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVLDKACIEECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|227548437|ref|ZP_03978486.1| ferredoxin [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079481|gb|EEI17444.1| ferredoxin [Corynebacterium lipophiloflavum DSM 44291]
          Length = 110

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 4  MTYIIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAI 58


>gi|120012|sp|P00215|FER_MYCSM RecName: Full=Ferredoxin
          Length = 106

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 39/54 (72%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAI 54


>gi|19552328|ref|NP_600330.1| ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|62389992|ref|YP_225394.1| ferredoxin [Corynebacterium glutamicum ATCC 13032]
 gi|145295244|ref|YP_001138065.1| hypothetical protein cgR_1185 [Corynebacterium glutamicum R]
 gi|21323869|dbj|BAB98495.1| Ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|41325328|emb|CAF19808.1| FERREDOXIN [Corynebacterium glutamicum ATCC 13032]
 gi|140845164|dbj|BAF54163.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 105

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E WL  N   A  + ++ +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGS 81


>gi|108802249|ref|YP_642446.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119871402|ref|YP_941354.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|126438231|ref|YP_001073922.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|108772668|gb|ABG11390.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119697491|gb|ABL94564.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
 gi|126238031|gb|ABO01432.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 115

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIGKACVDVMDRSCVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPS---AAKMDGVK 97
              +    +    A  +  +  + E L S   AAK+  V+
Sbjct: 61  LPADQREHLADNAAFFFDTLAGRDEPLGSPGGAAKVGPVQ 100


>gi|311743743|ref|ZP_07717549.1| ferredoxin [Aeromicrobium marinum DSM 15272]
 gi|311312873|gb|EFQ82784.1| ferredoxin [Aeromicrobium marinum DSM 15272]
          Length = 107

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIAQPCVDLKDRACVDECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              E W    +EY     +   K  S   AAK+  V   +
Sbjct: 61  TPAE-W----AEYYDANVHFFDKLGSPGGAAKLGVVDDDH 95


>gi|302524318|ref|ZP_07276660.1| ferredoxin [Streptomyces sp. AA4]
 gi|302433213|gb|EFL05029.1| ferredoxin [Streptomyces sp. AA4]
          Length = 106

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVLDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAI 55


>gi|300782955|ref|YP_003763246.1| ferredoxin [Amycolatopsis mediterranei U32]
 gi|269784343|emb|CBH51373.1| ferredoxin [Amycolatopsis balhimycina]
 gi|299792469|gb|ADJ42844.1| ferredoxin [Amycolatopsis mediterranei U32]
          Length = 106

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVLDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAI 55


>gi|297626788|ref|YP_003688551.1| Ferredoxin [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
 gi|296922553|emb|CBL57126.1| Ferredoxin [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
          Length = 106

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  + D
Sbjct: 1  MTYVIALPCVDVKDKACVEECPVDCIYEGERTLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
               + W  +N+ + ++
Sbjct: 61 LPDEYKEWYDVNANFFSE 78


>gi|269125402|ref|YP_003298772.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermomonospora curvata DSM 43183]
 gi|268310360|gb|ACY96734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermomonospora curvata DSM 43183]
          Length = 107

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVLDKACIEECPVDCIYEGKRQLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
               + + K+N+E+
Sbjct: 61 IPDQWKDFYKVNAEF 75


>gi|163847117|ref|YP_001635161.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus aurantiacus J-10-fl]
 gi|222524953|ref|YP_002569424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus sp. Y-400-fl]
 gi|163668406|gb|ABY34772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus aurantiacus J-10-fl]
 gi|222448832|gb|ACM53098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus sp. Y-400-fl]
          Length = 78

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 42/58 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ E CI  K   CV VCPVDC YEG++   I+PDECIDCG CEPECPV+AI  D
Sbjct: 1  MPYIIAEPCIGTKDASCVAVCPVDCIYEGDDQYYINPDECIDCGACEPECPVEAIFAD 58


>gi|300781508|ref|ZP_07091362.1| ferredoxin [Corynebacterium genitalium ATCC 33030]
 gi|300533215|gb|EFK54276.1| ferredoxin [Corynebacterium genitalium ATCC 33030]
          Length = 107

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDLLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAI 55


>gi|225022906|ref|ZP_03712098.1| hypothetical protein CORMATOL_02952 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305682158|ref|ZP_07404962.1| ferredoxin [Corynebacterium matruchotii ATCC 14266]
 gi|224944129|gb|EEG25338.1| hypothetical protein CORMATOL_02952 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658631|gb|EFM48134.1| ferredoxin [Corynebacterium matruchotii ATCC 14266]
          Length = 105

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVMDRACVEECPVDCIYEGQRSLYIHPDECVDCGACEPACPVEAI 55


>gi|300858189|ref|YP_003783172.1| ferredoxin [Corynebacterium pseudotuberculosis FRC41]
 gi|300685643|gb|ADK28565.1| Ferredoxin [Corynebacterium pseudotuberculosis FRC41]
 gi|302205911|gb|ADL10253.1| ferredoxin [Corynebacterium pseudotuberculosis C231]
 gi|302330467|gb|ADL20661.1| ferredoxin [Corynebacterium pseudotuberculosis 1002]
 gi|308276146|gb|ADO26045.1| ferredoxin [Corynebacterium pseudotuberculosis I19]
          Length = 105

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E WL  N   A  + ++ +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGS 81


>gi|120029|sp|P13279|FER_STRGR RecName: Full=Ferredoxin
          Length = 105

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDT 59
          TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + DT
Sbjct: 1  TYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 60

Query: 60 EPGLELWLKINSEY 73
              + + K N E+
Sbjct: 61 PEEWKDYYKANVEF 74


>gi|308234735|ref|ZP_07665472.1| putative ferredoxin 1 [Gardnerella vaginalis ATCC 14018]
 gi|311115179|ref|YP_003986400.1| ferredoxin [Gardnerella vaginalis ATCC 14019]
 gi|310946673|gb|ADP39377.1| ferredoxin [Gardnerella vaginalis ATCC 14019]
          Length = 106

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  + D
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
               E +     EY  +  ++   +E+ PS    D V
Sbjct: 61 VPEEWEWYKDAAIEYFNKLGDLGGAQEAGPSGWDEDRV 98


>gi|158312725|ref|YP_001505233.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Frankia sp. EAN1pec]
 gi|158108130|gb|ABW10327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EAN1pec]
          Length = 107

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|331694874|ref|YP_004331113.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326949563|gb|AEA23260.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 108

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ E C+      C+E CPVDC YEG   + IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAEPCVDLLDKACIEECPVDCIYEGGRMMYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + K N+E+
Sbjct: 61 VPEQWGAYQKANAEF 75


>gi|288920898|ref|ZP_06415194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
 gi|288347730|gb|EFC82011.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
          Length = 107

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|119714164|ref|YP_919306.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119526073|gb|ABL79443.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 117

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           MTYV+ + C+      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI   D 
Sbjct: 1   MTYVIGQPCVDVMDRGCVDECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  EPG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
            PG L  +L  N+ + ++     +     P  A   G      +  +  P
Sbjct: 61  LPGHLTPYLADNALFFSETLEGRSAPVGSPGGASKLGALGADTRLVAGLP 110


>gi|289640678|ref|ZP_06472850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia
          symbiont of Datisca glomerata]
 gi|289509567|gb|EFD30494.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia
          symbiont of Datisca glomerata]
          Length = 107

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|258654428|ref|YP_003203584.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nakamurella multipartita DSM 44233]
 gi|258557653|gb|ACV80595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
          multipartita DSM 44233]
          Length = 108

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVLDRACVEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|312194598|ref|YP_004014659.1| ferredoxin [Frankia sp. EuI1c]
 gi|311225934|gb|ADP78789.1| ferredoxin [Frankia sp. EuI1c]
          Length = 107

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|256374918|ref|YP_003098578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Actinosynnema mirum DSM 43827]
 gi|255919221|gb|ACU34732.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Actinosynnema mirum DSM 43827]
          Length = 108

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVLDKACIEECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|111225470|ref|YP_716264.1| ferredoxin [Frankia alni ACN14a]
 gi|111153002|emb|CAJ64749.1| Ferredoxin [Frankia alni ACN14a]
          Length = 107

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|86742537|ref|YP_482937.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86569399|gb|ABD13208.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 107

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|168700895|ref|ZP_02733172.1| ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 92

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 44/60 (73%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +VVT  C+ C++TDCV VCP++CFY  E  L I PD+CIDCG C PECPV+AI  D +
Sbjct: 1  MAHVVTAPCVGCRYTDCVVVCPMECFYGDERQLYIDPDDCIDCGACAPECPVEAIFLDGD 60


>gi|134097606|ref|YP_001103267.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008475|ref|ZP_06566448.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|120023|sp|P24496|FER_SACER RecName: Full=Ferredoxin
 gi|1223836|gb|AAA92023.1| ferredoxin [Saccharopolyspora erythraea]
 gi|133910229|emb|CAM00342.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 106

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 59/113 (52%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           MTYV+ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1   MTYVIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K N ++  +         S   AAK+  V +  E   S  P G+
Sbjct: 61  VPDEWAAYTKANVDFFDEL-------GSPGGAAKVGKVDRDVEPVSSLPPQGE 106


>gi|213970229|ref|ZP_03398360.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|213925110|gb|EEB58674.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
          Length = 89

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPDT 59
          M YVV + C+ CK T CV+VCPVD F + +  L I PD CI+CGVCEPECPVDA I P+ 
Sbjct: 1  MPYVVGKECLSCKSTICVDVCPVDAFRDADYQLVICPDTCIECGVCEPECPVDAIINPEE 60

Query: 60 EPGLEL-WLKINSEYATQWPNI 80
           PG     + +NSE +   P I
Sbjct: 61 YPGENHDVIVLNSELSKTSPVI 82


>gi|291302949|ref|YP_003514227.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Stackebrandtia nassauensis DSM 44728]
 gi|290572169|gb|ADD45134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Stackebrandtia nassauensis DSM 44728]
          Length = 106

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDLLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|256832039|ref|YP_003160766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Jonesia denitrificans DSM 20603]
 gi|256685570|gb|ACV08463.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Jonesia
          denitrificans DSM 20603]
          Length = 105

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAKPCVDVKDKACIEECPVDCIYEGNRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|145596271|ref|YP_001160568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora tropica CNB-440]
 gi|145305608|gb|ABP56190.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Salinispora tropica CNB-440]
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|86743147|ref|YP_483547.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86570009|gb|ABD13818.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 111

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 39/56 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          MT+VV   CI  K T CVE CPVDC YEG   L I+PDECIDCG C   CPVDAIK
Sbjct: 1  MTFVVLSPCIDVKDTACVEECPVDCIYEGSRKLYINPDECIDCGACASVCPVDAIK 56


>gi|297623880|ref|YP_003705314.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Truepera radiovictrix DSM 17093]
 gi|297165060|gb|ADI14771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera
          radiovictrix DSM 17093]
          Length = 78

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 46/73 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +++TE CI  K   CV+VCPV+C YE E+ L IHPDECIDCG C P CPV AI P+ +
Sbjct: 1  MPHIITEPCIGVKDKSCVDVCPVECIYEAEDQLYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 61 PGLELWLKINSEY 73
             E    I   Y
Sbjct: 61 VPSEWASYIQKNY 73


>gi|159039669|ref|YP_001538922.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora arenicola CNS-205]
 gi|157918504|gb|ABV99931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Salinispora
          arenicola CNS-205]
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|148271844|ref|YP_001221405.1| hypothetical protein CMM_0665 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147829774|emb|CAN00693.1| fdxA [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|317125728|ref|YP_004099840.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Intrasporangium calvum DSM 43043]
 gi|315589816|gb|ADU49113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Intrasporangium calvum DSM 43043]
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGIRTLYIHPDECVDCGACEPVCPVEAI 55


>gi|226361209|ref|YP_002778987.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239694|dbj|BAH50042.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 541

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 52/109 (47%), Gaps = 15/109 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
           M YVVT+NC  C    CV VCPVDC         Y+    L I P  CIDCG C   CPV
Sbjct: 1   MAYVVTQNC--CNDATCVAVCPVDCIHPTPAEREYKRTEMLYIDPGACIDCGACSDVCPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWPNITTKK---ESLPSAAKMDGV 96
           DAI P     P ++ +  IN+EY  + P         + LP A    GV
Sbjct: 59  DAIVPGDAPVPDIDRYRDINAEYFQRNPRSAAPGAHVQPLPIALATAGV 107


>gi|302869764|ref|YP_003838401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Micromonospora aurantiaca ATCC 27029]
 gi|315503754|ref|YP_004082641.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Micromonospora sp. L5]
 gi|330469998|ref|YP_004407741.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Verrucosispora maris AB-18-032]
 gi|302572623|gb|ADL48825.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Micromonospora aurantiaca ATCC 27029]
 gi|315410373|gb|ADU08490.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Micromonospora sp. L5]
 gi|328812969|gb|AEB47141.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Verrucosispora maris AB-18-032]
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|238060947|ref|ZP_04605656.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
          ATCC 39149]
 gi|237882758|gb|EEP71586.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
          ATCC 39149]
          Length = 108

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|148273357|ref|YP_001222918.1| hypothetical protein CMM_2173 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147831287|emb|CAN02243.1| fdxB [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 106

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|170782550|ref|YP_001710883.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157119|emb|CAQ02298.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
          Length = 106

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|325002600|ref|ZP_08123712.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Pseudonocardia
          sp. P1]
          Length = 108

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAEPCVDLLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|320012828|gb|ADW07678.1| ferredoxin [Streptomyces flavogriseus ATCC 33331]
          Length = 107

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+A+
Sbjct: 1  MTYVIAQPCVDIKDKACIEECPVDCIYEGPRKLYIHPDECVDCGACEPVCPVEAV 55


>gi|25027716|ref|NP_737770.1| putative ferredoxin [Corynebacterium efficiens YS-314]
 gi|259506882|ref|ZP_05749782.1| ferredoxin [Corynebacterium efficiens YS-314]
 gi|23492998|dbj|BAC17970.1| putative ferredoxin [Corynebacterium efficiens YS-314]
 gi|259165514|gb|EEW50068.1| ferredoxin [Corynebacterium efficiens YS-314]
          Length = 105

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E W+  N   A  + ++ +
Sbjct: 61 VPDE-WIDYNEANAAFFDDLGS 81


>gi|323359534|ref|YP_004225930.1| ferredoxin [Microbacterium testaceum StLB037]
 gi|323275905|dbj|BAJ76050.1| ferredoxin [Microbacterium testaceum StLB037]
          Length = 106

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|256825753|ref|YP_003149713.1| ferredoxin [Kytococcus sedentarius DSM 20547]
 gi|256689146|gb|ACV06948.1| ferredoxin [Kytococcus sedentarius DSM 20547]
          Length = 107

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDKACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|50955230|ref|YP_062518.1| ferredoxin [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951712|gb|AAT89413.1| ferredoxin [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 106

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|19554145|ref|NP_602147.1| ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|62391799|ref|YP_227201.1| ferredoxin [Corynebacterium glutamicum ATCC 13032]
 gi|21325732|dbj|BAC00353.1| Ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|41327141|emb|CAF20985.1| FERREDOXIN [Corynebacterium glutamicum ATCC 13032]
          Length = 107

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 43/66 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELW 66
             E W
Sbjct: 61 VPHEWW 66


>gi|227503767|ref|ZP_03933816.1| ferredoxin [Corynebacterium striatum ATCC 6940]
 gi|227199591|gb|EEI79639.1| ferredoxin [Corynebacterium striatum ATCC 6940]
          Length = 107

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E W+  N   A  + ++ +
Sbjct: 61 VPDE-WIDYNDANAAFFDDLGS 81


>gi|331697009|ref|YP_004333248.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326951698|gb|AEA25395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 120

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACVDECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|294811298|ref|ZP_06769941.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|326439851|ref|ZP_08214585.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294323897|gb|EFG05540.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
          Length = 108

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MAYVIAQPCVDVKDRACIEECPVDCIYEGPRKLYIHPDECVDCGACEPVCPVEAI 55


>gi|41410450|emb|CAE51194.1| putative ferredoxin [Thermus thermophilus]
          Length = 87

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIYPEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKE 85
                ++++ N  +A   PN+   +E
Sbjct: 61 VPEQWRIYIEKNRTWAQTLPNVHVLEE 87


>gi|183982094|ref|YP_001850385.1| ferredoxin FdxA_1 [Mycobacterium marinum M]
 gi|183175420|gb|ACC40530.1| ferredoxin FdxA_1 [Mycobacterium marinum M]
          Length = 115

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIGKPCIDVMDRACVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKM 93
              L   L  N  + T+  P       S   AAK+
Sbjct: 61 LPQELHPHLADNVAFFTETLPGRDGPLGSPGGAAKI 96


>gi|31044101|dbj|BAA33533.3| ferredoxin [Streptomyces griseus]
          Length = 57

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAI 55


>gi|269839181|ref|YP_003323873.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
 gi|269790911|gb|ACZ43051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
          Length = 83

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 52/77 (67%), Gaps = 4/77 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP- 57
          M YV+T  CI  K   CVEVCPVDC Y  ++     I+PDECIDCG CEPECPV AI P 
Sbjct: 1  MPYVITAPCIGVKDASCVEVCPVDCIYTDDDAPQYYINPDECIDCGACEPECPVSAIYPE 60

Query: 58 DTEP-GLELWLKINSEY 73
          D+ P   + +++IN+EY
Sbjct: 61 DSVPEQWQDFIRINAEY 77


>gi|326384561|ref|ZP_08206240.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326196695|gb|EGD53890.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 116

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPVDAI
Sbjct: 1  MTYVIALPCVDVMDRACVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVDAI 55


>gi|320450822|ref|YP_004202918.1| ferredoxin-1 [Thermus scotoductus SA-01]
 gi|320150991|gb|ADW22369.1| ferredoxin-1 [Thermus scotoductus SA-01]
          Length = 90

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P+  
Sbjct: 5  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIFPEED 64

Query: 60 --EPGLELWLKINSEYATQWPNITT 82
            EP  E +++ N ++A   PN+ T
Sbjct: 65 VPEPWRE-YIEKNRQWARTLPNVHT 88


>gi|213964508|ref|ZP_03392708.1| ferredoxin [Corynebacterium amycolatum SK46]
 gi|213952701|gb|EEB64083.1| ferredoxin [Corynebacterium amycolatum SK46]
          Length = 107

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|54026725|ref|YP_120967.1| putative ferredoxin [Nocardia farcinica IFM 10152]
 gi|54018233|dbj|BAD59603.1| putative ferredoxin [Nocardia farcinica IFM 10152]
          Length = 106

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y++ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MPYIIAEPCVDVKDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|319950850|ref|ZP_08024734.1| 7Fe ferredoxin [Dietzia cinnamea P4]
 gi|319435505|gb|EFV90741.1| 7Fe ferredoxin [Dietzia cinnamea P4]
          Length = 107

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + E C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAEPCVDVMDKSCVEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|38233568|ref|NP_939335.1| ferredoxin [Corynebacterium diphtheriae NCTC 13129]
 gi|38199828|emb|CAE49491.1| ferredoxin [Corynebacterium diphtheriae]
          Length = 105

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E W+  N   A  + ++ +
Sbjct: 61 VPDE-WIDYNDANAAFFDSLGS 81


>gi|41408824|ref|NP_961660.1| FdxA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118462225|ref|YP_882682.1| ferredoxin FdxA [Mycobacterium avium 104]
 gi|254775951|ref|ZP_05217467.1| putative ferredoxin FdxA [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|41397183|gb|AAS05043.1| FdxA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163512|gb|ABK64409.1| putative ferredoxin FdxA [Mycobacterium avium 104]
          Length = 118

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + CI      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIGKPCIDVMDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSE-YATQWPNITTKKESLPSAAKM 93
              L+  L  N   +A   P       S   AAK+
Sbjct: 61 LPEDLKPHLADNEAFFAEPLPGRDAPLGSPGGAAKL 96


>gi|72160895|ref|YP_288552.1| ferredoxin [Thermobifida fusca YX]
 gi|71914627|gb|AAZ54529.1| ferredoxin [Thermobifida fusca YX]
          Length = 106

 Score = 74.3 bits (181), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 + K+N E+
Sbjct: 61 LPSEWSDFYKVNVEF 75


>gi|331698393|ref|YP_004334632.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326953082|gb|AEA26779.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 114

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+   C+      CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MAYVIGLPCVDVLDRACVDECPVDCIYEGERALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSE-YATQWPNITTKKESLPSAAKM 93
              L+ +   N+  +A   P       S   AAK+
Sbjct: 61 LPESLQEYQADNARFFAEPLPGRDAPLGSPGGAAKL 96


>gi|116329640|ref|YP_799359.1| hypothetical protein LBL_4106 [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116332526|ref|YP_802243.1| hypothetical protein LBJ_4090 [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116122533|gb|ABJ80426.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116127393|gb|ABJ77485.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 99

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 51/89 (57%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C  CK+T C  VCPV+ F EG + L I P  CIDC  C PECPV+AI PD E
Sbjct: 1  MAYVVTEPCRNCKYTYCAAVCPVEAFREGADCLYIEPTVCIDCNKCRPECPVEAIYPDYE 60

Query: 61 -PGL-ELWLKINSEYATQWPNITTKKESL 87
           P +   W+  N   A  +P I   K  L
Sbjct: 61 VPSIWRDWVAENVHKAKHFPVIIDVKVPL 89


>gi|297564678|ref|YP_003683650.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849127|gb|ADH62142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 79

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE CI  K   CVEVCPV+C Y+G +   IHPDECIDCG C P CPV AI P+ +
Sbjct: 1  MPHVITEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 61 PGLELWLKI 69
             E    I
Sbjct: 61 VPAEFQSYI 69


>gi|297562832|ref|YP_003681806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nocardiopsis dassonvillei subsp. dassonvillei DSM
          43111]
 gi|296847280|gb|ADH69300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nocardiopsis dassonvillei subsp. dassonvillei DSM
          43111]
          Length = 106

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+      C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVLDKACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|295396223|ref|ZP_06806404.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294970930|gb|EFG46824.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 131

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +TY++ + C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 27 VTYIIAQPCVDLKDKACVDECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAI 81


>gi|326330916|ref|ZP_08197216.1| ferredoxin [Nocardioidaceae bacterium Broad-1]
 gi|325951274|gb|EGD43314.1| ferredoxin [Nocardioidaceae bacterium Broad-1]
          Length = 107

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CP +AI
Sbjct: 1  MTYVIAQPCVDVKDKACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPPEAI 55


>gi|331697480|ref|YP_004333719.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326952169|gb|AEA25866.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 114

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      CV+VCPVDC Y+G   L I+P ECI+CG CEPECPVDAI
Sbjct: 1  MTYIIAEPCVDLMDRSCVDVCPVDCIYQGGRKLYINPGECIECGACEPECPVDAI 55


>gi|319441049|ref|ZP_07990205.1| hypothetical protein CvarD4_04702 [Corynebacterium variabile DSM
          44702]
          Length = 107

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 2/99 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CP +AI  + D
Sbjct: 1  MTYVIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
               E ++  N+ +     +     +  P     +G+K
Sbjct: 61 LPDEWEDYIDFNTAFFDDLGDPGGAAKLGPQDFDPEGIK 99


>gi|237785229|ref|YP_002905934.1| Ferredoxin [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758141|gb|ACR17391.1| Ferredoxin [Corynebacterium kroppenstedtii DSM 44385]
          Length = 105

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y + E C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MAYTIAEPCVDVKDKACVEECPVDCIYEGVRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITT 82
             E W+  N   A  + ++ +
Sbjct: 61 VPDE-WIDYNDANAAFFDDLGS 81


>gi|172040342|ref|YP_001800056.1| hypothetical protein cur_0662 [Corynebacterium urealyticum DSM
          7109]
 gi|171851646|emb|CAQ04622.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 105

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+A+
Sbjct: 1  MTYTIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAV 55


>gi|68536481|ref|YP_251186.1| hypothetical protein jk1395 [Corynebacterium jeikeium K411]
 gi|68264080|emb|CAI37568.1| fdxA [Corynebacterium jeikeium K411]
          Length = 105

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|260577611|ref|ZP_05845549.1| ferredoxin [Corynebacterium jeikeium ATCC 43734]
 gi|258604264|gb|EEW17503.1| ferredoxin [Corynebacterium jeikeium ATCC 43734]
          Length = 105

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|300933568|ref|ZP_07148824.1| Ferredoxin [Corynebacterium resistens DSM 45100]
          Length = 107

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
             E W + N+  A  + ++ +       AAKM
Sbjct: 61 IPDE-WEEYNAANAAFFDDLGSPG----GAAKM 88


>gi|297571981|ref|YP_003697755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Arcanobacterium haemolyticum DSM 20595]
 gi|296932328|gb|ADH93136.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Arcanobacterium haemolyticum DSM 20595]
          Length = 107

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   CV+ CPVDC YEGE  L IHPDEC+DCG CEP CP +AI
Sbjct: 1  MTYVIALPCVDVKDRACVDECPVDCIYEGERTLYIHPDECVDCGACEPVCPTEAI 55


>gi|226304296|ref|YP_002764254.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183411|dbj|BAH31515.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 563

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 47/83 (56%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTYVVT+ C  C    CV VCPV+C         Y     L I P+ CIDCG C   CP+
Sbjct: 1  MTYVVTQPC--CNDASCVAVCPVNCIHPTPDESDYARTEMLYIDPNTCIDCGACADACPI 58

Query: 53 DAIKPDT--EPGLELWLKINSEY 73
          DAI PD+  + G   +L+IN++Y
Sbjct: 59 DAIVPDSDLDEGDMPYLEINADY 81


>gi|152965106|ref|YP_001360890.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
          radiotolerans SRS30216]
 gi|151359623|gb|ABS02626.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
          radiotolerans SRS30216]
          Length = 136

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +TYV+ + C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 29 VTYVIAQPCVDVKDKACIEECPVDCIYEGNRSLYIQPDECVDCGACEPVCPVEAI 83


>gi|116669636|ref|YP_830569.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrobacter sp. FB24]
 gi|116609745|gb|ABK02469.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Arthrobacter sp. FB24]
          Length = 106

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C++ CPVDC YEGE  L IHP EC+DCG C+P CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDKACIDECPVDCIYEGERSLYIHPSECVDCGACDPVCPVEAI 55


>gi|226307668|ref|YP_002767628.1| 7Fe ferredoxin [Rhodococcus erythropolis PR4]
 gi|229493921|ref|ZP_04387693.1| ferredoxin [Rhodococcus erythropolis SK121]
 gi|226186785|dbj|BAH34889.1| 7Fe ferredoxin [Rhodococcus erythropolis PR4]
 gi|229319198|gb|EEN85047.1| ferredoxin [Rhodococcus erythropolis SK121]
          Length = 107

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|320450842|ref|YP_004202938.1| conserved domain-containing protein [Thermus scotoductus SA-01]
 gi|320151011|gb|ADW22389.1| conserved domain protein [Thermus scotoductus SA-01]
          Length = 93

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 5  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIYPEED 64

Query: 59 TEPGLELWLKINSEYATQWPNI 80
               +++++ N  +A   PN+
Sbjct: 65 VPEQWKVYIEKNRTWAQTLPNV 86


>gi|312138850|ref|YP_004006186.1| ferredoxin [Rhodococcus equi 103S]
 gi|325676447|ref|ZP_08156125.1| ferredoxin [Rhodococcus equi ATCC 33707]
 gi|311888189|emb|CBH47501.1| putative ferredoxin [Rhodococcus equi 103S]
 gi|325552625|gb|EGD22309.1| ferredoxin [Rhodococcus equi ATCC 33707]
          Length = 107

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|111021988|ref|YP_704960.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226364495|ref|YP_002782277.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|110821518|gb|ABG96802.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226242984|dbj|BAH53332.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 108

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|257068295|ref|YP_003154550.1| ferredoxin [Brachybacterium faecium DSM 4810]
 gi|256559113|gb|ACU84960.1| ferredoxin [Brachybacterium faecium DSM 4810]
          Length = 109

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+   C+  K   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYVIALPCVDVKDRACVDECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
          T      + K N E+
Sbjct: 61 TPDQWAEYYKANVEF 75


>gi|269219106|ref|ZP_06162960.1| ferredoxin [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211253|gb|EEZ77593.1| ferredoxin [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 106

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY++   C+      CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYIIALPCVDVMDRACVDECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                ++  +N+E+
Sbjct: 61 LPEEWSVFESVNAEF 75


>gi|227494787|ref|ZP_03925103.1| possible ferredoxin [Actinomyces coleocanis DSM 15436]
 gi|226831239|gb|EEH63622.1| possible ferredoxin [Actinomyces coleocanis DSM 15436]
          Length = 107

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   CV+ CPVDC YEG+  L IHP+EC+DCG CEP CP +AI
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGQRSLYIHPEECVDCGACEPVCPTEAI 55


>gi|151568126|pdb|2V2K|A Chain A, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
          Mycobacterium Smegmatis
 gi|151568127|pdb|2V2K|B Chain B, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
          Mycobacterium Smegmatis
          Length = 105

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 38/54 (70%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+D G CEP CPV+AI
Sbjct: 1  TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDXGACEPVCPVEAI 54


>gi|163745320|ref|ZP_02152680.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
          indolifex HEL-45]
 gi|161382138|gb|EDQ06547.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
          indolifex HEL-45]
          Length = 115

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  ++T  CI  K   C   CPVDC YEGE    IHP ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MPLIITSACIDVKDGICTTSCPVDCIYEGERMFYIHPTECIECGMCESICPVDAIRYDDE 60

Query: 61 P-GLEL-WLKINSE 72
            G E  +++IN+E
Sbjct: 61 ATGAEAKFVRINAE 74


>gi|119718522|ref|YP_925487.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119539183|gb|ABL83800.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 114

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ E CI  +   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MAYVIGEPCIDVQDRACVDECPVDCIYEGARSLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSE-YATQWPNITTKKESLPSAAKM 93
              L+ +   N+  +A   P       S   AAK+
Sbjct: 61 LPAELQPYQDDNARFFAEVLPGRDRPIGSPGGAAKL 96


>gi|254822186|ref|ZP_05227187.1| ferredoxin FdxA_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 117

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MAYVIGKPCVDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAI 55


>gi|21225392|ref|NP_631171.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|9885208|emb|CAC04216.1| ferredoxin [Streptomyces coelicolor A3(2)]
          Length = 129

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDIKDRACVTECPVDCIYEGARTLYINPAECVDCHACEPVCPVEAIFHEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 +L +N+EY          + + PS A+ D V
Sbjct: 61 LPRHWAHYLAVNAEY--------FDEAASPSRARRDAV 90


>gi|254774707|ref|ZP_05216223.1| ferredoxin FdxA_1 [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 117

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MAYVIGKPCVDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAI 55


>gi|226349641|ref|YP_002776755.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226245556|dbj|BAH55903.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 104

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 38/57 (66%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +V+ E C+      C+E CPVDC YEG   L IH +ECIDCG CEP CPV AI+P
Sbjct: 1  MAFVIGEPCVDVMDKSCIEECPVDCIYEGGRMLYIHQNECIDCGACEPVCPVSAIRP 57


>gi|326381449|ref|ZP_08203143.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326199696|gb|EGD56876.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 108

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ E C+      CVE CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAEPCVDVLDRACVEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|15807321|ref|NP_296051.1| ferredoxin [Deinococcus radiodurans R1]
 gi|6460141|gb|AAF11876.1|AE002064_7 ferredoxin [Deinococcus radiodurans R1]
          Length = 123

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +V+T  CI  K   C EVCPV+C YEG     IHPDECIDCG C P CPV AI P  D
Sbjct: 46  MPHVITSPCIGVKDQACTEVCPVECIYEGGEQFFIHPDECIDCGACVPACPVSAIFPEED 105

Query: 59  TEPGLELWLKINSEY 73
              G + ++  NS +
Sbjct: 106 VPDGEQDFIVKNSAH 120


>gi|283782746|ref|YP_003373500.1| putative ferredoxin 1 [Gardnerella vaginalis 409-05]
 gi|283442204|gb|ADB14670.1| putative ferredoxin 1 [Gardnerella vaginalis 409-05]
          Length = 110

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  + D
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
             G E +     +Y  +  ++    ++  S 
Sbjct: 61 LPDGWEWYRDAAVDYFDKLGDLGGATDAGASG 92


>gi|154507672|ref|ZP_02043314.1| hypothetical protein ACTODO_00153 [Actinomyces odontolyticus ATCC
          17982]
 gi|293189345|ref|ZP_06608068.1| ferredoxin [Actinomyces odontolyticus F0309]
 gi|153797306|gb|EDN79726.1| hypothetical protein ACTODO_00153 [Actinomyces odontolyticus ATCC
          17982]
 gi|292821808|gb|EFF80744.1| ferredoxin [Actinomyces odontolyticus F0309]
          Length = 113

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   CV+ CPVDC YEG   L IHP+EC+DCG CEP CP +AI
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGARSLYIHPEECVDCGACEPVCPTEAI 55


>gi|111226128|ref|YP_716922.1| ferredoxin [Frankia alni ACN14a]
 gi|111153660|emb|CAJ65420.1| Ferredoxin [Frankia alni ACN14a]
          Length = 111

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT+VVT  CI  K T C+  CPVDC YEG   L I+P+ECIDCG CE  CPVDAI
Sbjct: 1  MTFVVTSACIDVKDTACLGECPVDCIYEGVRKLYINPNECIDCGACESACPVDAI 55


>gi|297242981|ref|ZP_06926919.1| ferredoxin [Gardnerella vaginalis AMD]
 gi|296889192|gb|EFH27926.1| ferredoxin [Gardnerella vaginalis AMD]
          Length = 110

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  + D
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
             G E +     +Y  +  ++    ++  S 
Sbjct: 61 LPEGWEWYRDAAVDYFDKLGDLGGATDAGASG 92


>gi|226366514|ref|YP_002784297.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226245004|dbj|BAH55352.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 107

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ E C+      C+E CPVDC YEG   + IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MPYVIAEPCVDVLDKACIEECPVDCIYEGGRMMYIHPDECVDCGACEPVCPVEAI 55


>gi|290960677|ref|YP_003491859.1| ferredoxin [Streptomyces scabiei 87.22]
 gi|260650203|emb|CBG73319.1| ferredoxin [Streptomyces scabiei 87.22]
          Length = 103

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   C++ CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAQPCVDVKDRACIDECPVDCIYEGPRKLYIQPDECVDCGACEPVCPVEAI 55


>gi|108804037|ref|YP_643974.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108765280|gb|ABG04162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 87

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+TE CI  K+T CV VCPVDC Y+  +   I+P+ECIDC +C P+CPV+AI P
Sbjct: 1  MAYVITEACIGTKNTACVAVCPVDCIYDAGDQYVINPEECIDCSMCMPQCPVEAIYP 57


>gi|260905761|ref|ZP_05914083.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 108

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY++ + C+  K   C++ CPVDC YEG   L IHP+EC+DCG CEP CPV+AI
Sbjct: 1  MTYIIAQPCVDLKDRACIDECPVDCIYEGSRSLYIHPEECVDCGACEPVCPVEAI 55


>gi|169628420|ref|YP_001702069.1| ferredoxin FdxC [Mycobacterium abscessus ATCC 19977]
 gi|169240387|emb|CAM61415.1| Probable ferredoxin FdxC [Mycobacterium abscessus]
          Length = 123

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +TY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 16 VTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 70


>gi|297564743|ref|YP_003683715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849192|gb|ADH62207.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 86

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 43/69 (62%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI  K   C EVCPV+C Y+G + L IHPDECIDCG C P CPV AI P  +
Sbjct: 1  MPHVIAEPCIGVKDRSCQEVCPVECIYDGGDQLYIHPDECIDCGACVPACPVSAIYPQED 60

Query: 61 PGLELWLKI 69
             E +  I
Sbjct: 61 LPAEWYSYI 69


>gi|262203210|ref|YP_003274418.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262086557|gb|ACY22525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 108

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY++ E C+      CVE CPVDC YEG   L I PDEC+DCG CEP CPV+AI  + D
Sbjct: 1  MTYIIAEPCVDVMDKACVEECPVDCIYEGGRALYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
               E ++  N+++
Sbjct: 61 VPDEWEPYVSANADF 75


>gi|328949904|ref|YP_004367239.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinithermus hydrothermalis DSM 14884]
 gi|328450228|gb|AEB11129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinithermus hydrothermalis DSM 14884]
          Length = 79

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 41/60 (68%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P+ +
Sbjct: 1  MPHVITEPCIGVKDQSCTEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60


>gi|257067244|ref|YP_003153499.1| ferredoxin [Brachybacterium faecium DSM 4810]
 gi|256558062|gb|ACU83909.1| ferredoxin [Brachybacterium faecium DSM 4810]
          Length = 109

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRACVDECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|291294431|ref|YP_003505829.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus ruber DSM 1279]
 gi|290469390|gb|ADD26809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          ruber DSM 1279]
          Length = 79

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 41/60 (68%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHPDECIDCG C P CPV AI P+ +
Sbjct: 1  MPHVIVEPCIGTKDKSCVEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60


>gi|29828838|ref|NP_823472.1| ferredoxin [Streptomyces avermitilis MA-4680]
 gi|29605943|dbj|BAC70007.1| putative ferredoxin [Streptomyces avermitilis MA-4680]
          Length = 108

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 37/55 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   CV  CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIALPCVDVKDRSCVGECPVDCIYEGRRALYIQPDECVDCGACEPVCPVEAI 55


>gi|298253085|ref|ZP_06976877.1| ferredoxin [Gardnerella vaginalis 5-1]
 gi|297532480|gb|EFH71366.1| ferredoxin [Gardnerella vaginalis 5-1]
          Length = 110

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAI 55


>gi|119960623|ref|YP_946862.1| ferredoxin [Arthrobacter aurescens TC1]
 gi|119947482|gb|ABM06393.1| ferredoxin [Arthrobacter aurescens TC1]
          Length = 106

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M+YV+ + C+  K   C++ CPVDC YEG+  L IHP EC+DCG C+P CPV+AI
Sbjct: 1  MSYVIAQPCVDVKDRACIQECPVDCIYEGDRSLYIHPSECVDCGACDPVCPVEAI 55


>gi|116255229|ref|YP_771062.1| putative ferredoxin [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259877|emb|CAK02971.1| putative ferredoxin [Rhizobium leguminosarum bv. viciae 3841]
          Length = 108

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 38/60 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T+ CI  K  DC   CPVDC YEG     IHP ECI+CG+C   CPVDAI  D E
Sbjct: 1  MAYVITDPCIDVKDGDCTVACPVDCIYEGGRMFYIHPGECINCGLCLSVCPVDAISWDEE 60


>gi|94984884|ref|YP_604248.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
          DSM 11300]
 gi|94555165|gb|ABF45079.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
          geothermalis DSM 11300]
          Length = 78

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFVIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEY 73
             G E ++  N  +
Sbjct: 61 VPAGEEEFIFKNRAF 75


>gi|118618608|ref|YP_906940.1| ferredoxin FdxA_1 [Mycobacterium ulcerans Agy99]
 gi|118570718|gb|ABL05469.1| ferredoxin FdxA_1 [Mycobacterium ulcerans Agy99]
          Length = 115

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + CI      CVE CPVDC YEG   L IHPDE +DCG CEP CPV+AI
Sbjct: 1  MTYVIGKPCIDVTDRACVEECPVDCIYEGGRSLYIHPDEFVDCGACEPVCPVEAI 55


>gi|324997878|ref|ZP_08118990.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia sp. P1]
          Length = 104

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YVVTE CI  +   C+E CPVDC Y G+  + IHPDEC+DCG C P CP +AI
Sbjct: 1  MAYVVTEACIDVQDRACMEECPVDCIYPGDRMMYIHPDECVDCGKCMPACPSEAI 55


>gi|326772206|ref|ZP_08231491.1| ferredoxin [Actinomyces viscosus C505]
 gi|326638339|gb|EGE39240.1| ferredoxin [Actinomyces viscosus C505]
          Length = 116

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  + D
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
               E + + N ++         K    P  A+  GV
Sbjct: 61 VPEEWEDYTRANIDF------FELKGLGSPGGAQRTGV 92


>gi|227497862|ref|ZP_03928046.1| possible ferredoxin [Actinomyces urogenitalis DSM 15434]
 gi|226832711|gb|EEH65094.1| possible ferredoxin [Actinomyces urogenitalis DSM 15434]
          Length = 117

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAI 55


>gi|170782509|ref|YP_001710842.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157078|emb|CAQ02253.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
          Length = 108

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT V+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MTCVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAI 55


>gi|320531785|ref|ZP_08032710.1| putative ferredoxin [Actinomyces sp. oral taxon 171 str. F0337]
 gi|325067472|ref|ZP_08126145.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Actinomyces oris K20]
 gi|329944142|ref|ZP_08292401.1| ferredoxin [Actinomyces sp. oral taxon 170 str. F0386]
 gi|320135997|gb|EFW28020.1| putative ferredoxin [Actinomyces sp. oral taxon 171 str. F0337]
 gi|328530872|gb|EGF57728.1| ferredoxin [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 116

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAI 55


>gi|114776699|ref|ZP_01451742.1| Ferredoxin [Mariprofundus ferrooxydans PV-1]
 gi|114552785|gb|EAU55216.1| Ferredoxin [Mariprofundus ferrooxydans PV-1]
          Length = 114

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 59/112 (52%), Gaps = 12/112 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD 53
           M +VVT+ C  C  T CV VCPVDCFY       E  N L I P+ECIDC VCEPECP +
Sbjct: 1   MAFVVTQLCKDCVDTACVAVCPVDCFYQPKDISAETPNMLYISPEECIDCAVCEPECPWE 60

Query: 54  AIKP--DTEPGLELWLKINSEYATQ---WPNITTKKESLPSAAKMDGVKQKY 100
           AI P  D     E  + +N    T+   +     K  + PSA ++   K KY
Sbjct: 61  AIYPEEDVPDVFEDDIALNELSDTERDLFELAEVKDHTPPSADEVAANKAKY 112


>gi|256783588|ref|ZP_05522019.1| ferredoxin [Streptomyces lividans TK24]
 gi|289767469|ref|ZP_06526847.1| ferredoxin [Streptomyces lividans TK24]
 gi|289697668|gb|EFD65097.1| ferredoxin [Streptomyces lividans TK24]
          Length = 129

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCVDIKDRACVTECPVDCIYEGARTLYINPAECVDCHACEPVCPVEAIFHEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 +L +N+EY
Sbjct: 61 LPRHWAHYLAVNAEY 75


>gi|119714883|ref|YP_921848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119535544|gb|ABL80161.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 544

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MT+V+T++C  C+   CV VCPV C         +E    L I P  CIDCG C   CPV
Sbjct: 1  MTFVITQSC--CEDAACVTVCPVQCIRPRPGDPDFESTEQLYIDPSSCIDCGACATACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          DAI P     P L  +  +N+EY    P
Sbjct: 59 DAIYPGDALPPSLSTFSAVNAEYFEARP 86


>gi|296138878|ref|YP_003646121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
 gi|296027012|gb|ADG77782.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
          Length = 108

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 37/55 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY + E C+      C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYTIAEPCVDVLDKACIEECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAI 55


>gi|111022909|ref|YP_705881.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226365417|ref|YP_002783200.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|110822439|gb|ABG97723.1| possible ferredoxin [Rhodococcus jostii RHA1]
 gi|226243907|dbj|BAH54255.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 107

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 37/55 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI
Sbjct: 1  MPYTIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAI 55


>gi|317506365|ref|ZP_07964176.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
 gi|316255328|gb|EFV14587.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
          Length = 112

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M +VV E C+      C+E CPVDC Y G   + I+PD CIDCG CEP CPV+AI  + D
Sbjct: 1  MAFVVAEPCVDVLDRSCLEECPVDCMYTGNRMVYINPDLCIDCGACEPVCPVEAIYFEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNI 80
             G   + + N+E+    P +
Sbjct: 61 VPEGWSAFRQANAEFFKDIPGL 82


>gi|226357256|ref|YP_002786996.1| ferredoxin [Deinococcus deserti VCD115]
 gi|226319246|gb|ACO47242.1| putative ferredoxin [Deinococcus deserti VCD115]
          Length = 78

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+   CI  K   C EVCPV+C Y+      IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIVSPCIGTKDQACTEVCPVECIYDAGEMFLIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEY 73
             G E ++  N E+
Sbjct: 61 VPAGEESFIARNREH 75


>gi|312141637|ref|YP_004008973.1| ferredoxin [Rhodococcus equi 103S]
 gi|325673105|ref|ZP_08152799.1| ferredoxin [Rhodococcus equi ATCC 33707]
 gi|311890976|emb|CBH50295.1| ferredoxin [Rhodococcus equi 103S]
 gi|325556358|gb|EGD26026.1| ferredoxin [Rhodococcus equi ATCC 33707]
          Length = 106

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 50/96 (52%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI      C+E CPVDC YEGE  L I+P+ECIDCG CE  CPV+AI  D +
Sbjct: 1  MAFVIGEACIDYMDRSCMEECPVDCIYEGERKLYINPNECIDCGACELACPVEAITVDRK 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
             E        +    P       +   AAK+D +
Sbjct: 61 ADPEFKEDAKRFFLEILPTRAEPVGNPGGAAKIDVI 96


>gi|94986311|ref|YP_605675.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
          DSM 11300]
 gi|94556592|gb|ABF46506.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
          geothermalis DSM 11300]
          Length = 78

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFVIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEY 73
             G E +   N  +
Sbjct: 61 VPAGEEEFTLKNRAF 75


>gi|218288758|ref|ZP_03493021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|218241116|gb|EED08292.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
          Length = 80

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----- 55
          MTYV+T  CI  K  DCVEVCPVD  ++G     I P+ CIDCG CEP CPV AI     
Sbjct: 2  MTYVITSPCIGEKAADCVEVCPVDAIHDGGATYLIDPERCIDCGACEPVCPVSAIFHEAS 61

Query: 56 KPDTEPGLELWLKINSEY 73
           PD E     W++IN  +
Sbjct: 62 VPDDE---RHWIEINRAF 76


>gi|226364584|ref|YP_002782366.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226243073|dbj|BAH53421.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 559

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C         +     L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEKPFATTEMLYIDPDTCIDCGACVEECPV 58

Query: 53 DAI--KPDTEPGLELWLKINSEYATQWP 78
          +AI  + D +   E +L IN++Y T+ P
Sbjct: 59 EAIYAENDLDEVDEPYLDINAQYYTKHP 86


>gi|254449213|ref|ZP_05062662.1| ferredoxin, 4Fe-4S [gamma proteobacterium HTCC5015]
 gi|198261190|gb|EDY85486.1| ferredoxin, 4Fe-4S [gamma proteobacterium HTCC5015]
          Length = 85

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNI 80
           +DCF+EG NFL I PD CIDC +C P CP +AI PD E   G   +  +N+E +  WP +
Sbjct: 1   MDCFHEGPNFLVIDPDACIDCSLCVPACPAEAIYPDDELPEGQAHFTALNAELSKLWPVL 60

Query: 81  TTKKESLPSAAKMDGVKQKY 100
              K  LP A   DG   K 
Sbjct: 61  DEPKAPLPDADDWDGEPDKL 80


>gi|311900686|dbj|BAJ33094.1| putative 7Fe ferredoxin [Kitasatospora setae KM-6054]
          Length = 104

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYVV   C+  K   C E CPVD  YEG   L IHPDECIDCG CE  CPV+AI  + D
Sbjct: 1  MTYVVALPCVDVKDRACTEECPVDGIYEGPRMLYIHPDECIDCGACEVVCPVEAIHYEDD 60

Query: 59 TEPGLELWLKINSEYATQW 77
              L  +   N+E+  + 
Sbjct: 61 LPAELRPFAAANAEFCAEL 79


>gi|325284128|ref|YP_004256669.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
 gi|324315937|gb|ADY27052.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
          Length = 78

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 41/60 (68%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV+AI P+ +
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFLIHPDECIDCGACVPACPVNAIFPEED 60


>gi|111220922|ref|YP_711716.1| ferredoxin [Frankia alni ACN14a]
 gi|111148454|emb|CAJ60125.1| Ferredoxin (partial match) [Frankia alni ACN14a]
          Length = 140

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T  C+      CV+ CPVDC YEG   L IHP+ECIDCG C   CPVDAI  + +
Sbjct: 1  MVYVITAACLDVTDRSCVDECPVDCVYEGRRKLYIHPEECIDCGACARVCPVDAIVWERD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESL--PSAAKMDG 95
             +    +   +A  +  ++ + + +  P  A M G
Sbjct: 61 LDGDGHAHLGDAHAFFYRPLSGRPKPIGAPGGAGMLG 97


>gi|46200111|ref|YP_005778.1| ferredoxin [Thermus thermophilus HB27]
 gi|55980146|ref|YP_143443.1| ferredoxin [Thermus thermophilus HB8]
 gi|62288089|sp|P03942|FER_THET8 RecName: Full=Ferredoxin
 gi|46197739|gb|AAS82151.1| ferredoxin [Thermus thermophilus HB27]
 gi|55771559|dbj|BAD70000.1| ferredoxin [Thermus thermophilus HB8]
          Length = 79

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P+ +
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEED 60


>gi|111022079|ref|YP_705051.1| ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus jostii
          RHA1]
 gi|110821609|gb|ABG96893.1| possible ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus
          jostii RHA1]
          Length = 559

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C         +     L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEKPFATTEMLYIDPDTCIDCGACVEECPV 58

Query: 53 DAI--KPDTEPGLELWLKINSEYATQWP 78
          +AI  + D +   E +L IN++Y T+ P
Sbjct: 59 EAIYAENDLDEVDEPYLDINAQYYTKHP 86


>gi|118592808|ref|ZP_01550197.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Stappia aggregata
          IAM 12614]
 gi|118434578|gb|EAV41230.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Stappia aggregata
          IAM 12614]
          Length = 115

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 38/60 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  ++   CI  K   C   CPVDC YEGE    IHP+ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MALIIKSECIDVKDGICTTSCPVDCIYEGERMFYIHPEECIECGMCESICPVDAIRYDDE 60


>gi|28493542|ref|NP_787703.1| ferredoxin [Tropheryma whipplei str. Twist]
 gi|28572347|ref|NP_789127.1| ferredoxin [Tropheryma whipplei TW08/27]
 gi|28410478|emb|CAD66864.1| ferredoxin [Tropheryma whipplei TW08/27]
 gi|28476584|gb|AAO44672.1| ferredoxin [Tropheryma whipplei str. Twist]
          Length = 108

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+  K   C++ CPVDC YEG   L I+PDEC+DCG CEP CPV+AI
Sbjct: 1  MTYVIAFPCVDLKDRACIDECPVDCIYEGGRSLYINPDECVDCGACEPVCPVEAI 55


>gi|183601928|ref|ZP_02963297.1| ferredoxin [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682842|ref|YP_002469225.1| ferredoxin [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190418|ref|YP_002967812.1| ferredoxin [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195824|ref|YP_002969379.1| ferredoxin [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218813|gb|EDT89455.1| ferredoxin [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620492|gb|ACL28649.1| ferredoxin [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248810|gb|ACS45750.1| ferredoxin [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250378|gb|ACS47317.1| ferredoxin [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178141|gb|ADC85387.1| Ferredoxin [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793405|gb|ADG32940.1| ferredoxin [Bifidobacterium animalis subsp. lactis V9]
          Length = 107

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          M YV+ + C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CP +AI  + D
Sbjct: 1  MAYVIAQPCVDVKDKACVDECPVDCIYEGKRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLP 88
            P  E +     E+  +  ++   + + P
Sbjct: 61 LPPEWEWYKDAAVEFFAEVGDLGGAQAAGP 90


>gi|320449419|ref|YP_004201515.1| ferredoxin-1 [Thermus scotoductus SA-01]
 gi|320149588|gb|ADW20966.1| ferredoxin-1 [Thermus scotoductus SA-01]
          Length = 79

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P+ +
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIFPEED 60


>gi|3334183|sp|Q45560|FER_BACSC RecName: Full=Ferredoxin 7Fe; AltName: Full=Seven-iron ferredoxin
 gi|474962|dbj|BAA06187.1| ferredoxin [Bacillus schlegelii]
          Length = 78

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI
Sbjct: 1  MAYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAI 55


>gi|218294618|ref|ZP_03495472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
          aquaticus Y51MC23]
 gi|218244526|gb|EED11050.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
          aquaticus Y51MC23]
          Length = 79

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 42/60 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P+ +
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIFPEED 60


>gi|320335830|ref|YP_004172541.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
 gi|319757119|gb|ADV68876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
          Length = 78

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P+ +
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIFPEED 60

Query: 61 -PGLEL 65
           PG ++
Sbjct: 61 VPGDQV 66


>gi|297153736|gb|ADI03448.1| ferredoxin [Streptomyces bingchenggensis BCW-1]
          Length = 127

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + CI  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  + D
Sbjct: 1  MTYVIAQPCIDIKDRACVIECPVDCIYEGNRTLYINPAECVDCHACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
                 +  IN+EY
Sbjct: 61 LPQQWAQYKAINAEY 75


>gi|89056240|ref|YP_511691.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88865789|gb|ABD56666.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp.
          CCS1]
          Length = 116

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 37/60 (61%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V+   C+  K   C   CPVDC YEGE    IHP ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MALVILSACVDVKDGICTTSCPVDCIYEGERMFYIHPTECIECGMCESICPVDAIRYDDE 60


>gi|294790482|ref|ZP_06755640.1| ferredoxin [Scardovia inopinata F0304]
 gi|294458379|gb|EFG26732.1| ferredoxin [Scardovia inopinata F0304]
          Length = 111

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M YV+ E C+  K   CVE CPVDC YEG   L I+P+EC+DCG CEP CP +AI   D 
Sbjct: 1  MAYVIAEPCVDVKDKACVEECPVDCIYEGPRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 60 EPGLELWLK 68
           P    W K
Sbjct: 61 LPDDWAWYK 69


>gi|298346081|ref|YP_003718768.1| putative ferredoxin [Mobiluncus curtisii ATCC 43063]
 gi|304390160|ref|ZP_07372114.1| ferredoxin [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654663|ref|ZP_07907569.1| ferredoxin [Mobiluncus curtisii ATCC 51333]
 gi|315657420|ref|ZP_07910302.1| ferredoxin [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236142|gb|ADI67274.1| possible ferredoxin [Mobiluncus curtisii ATCC 43063]
 gi|304326642|gb|EFL93886.1| ferredoxin [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491127|gb|EFU80746.1| ferredoxin [Mobiluncus curtisii ATCC 51333]
 gi|315491892|gb|EFU81501.1| ferredoxin [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 107

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+P EC+DCG CEP CP  AI  + D
Sbjct: 1  MTYVIAQPCVDVKDKACVDECPVDCIYEGERTLYINPLECVDCGACEPVCPPQAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESL 87
                 +L+   ++   + N T    S+
Sbjct: 61 LPEPWTDFLRAGRDFFADFDNPTPGGASV 89


>gi|226308457|ref|YP_002768417.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226187574|dbj|BAH35678.1| probable ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 560

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C         +     L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEAPFATTEMLYIDPDTCIDCGACVDECPV 58

Query: 53 DAIKPDTEPGLE--LWLKINSEYATQWP 78
          +AI PD E   +   +L++N+ Y  + P
Sbjct: 59 EAIFPDNELDEDDAPYLQMNASYFEKHP 86


>gi|298242651|ref|ZP_06966458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297555705|gb|EFH89569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 87

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 10/86 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ CI  +   CV+VCPVDC         YE    L I+PDECIDCG CEP CPV
Sbjct: 1  MAYVITQPCIGVRDASCVDVCPVDCIHPSSNEPGYEEAEQLFINPDECIDCGACEPACPV 60

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQ 76
           AI  ++    E   ++KIN+E+  +
Sbjct: 61 TAIFEESAVPDEWKSYIKINAEFFNR 86


>gi|325675367|ref|ZP_08155051.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
 gi|325553338|gb|EGD23016.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
          Length = 564

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY----EGE----NFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +    E E      L I P  CIDCG C   CPV
Sbjct: 1  MAYVITQTC--CNDASCVSACPVNCIHPTPEEAEFATTEMLYIEPQACIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          +AI P+ +    L+ + +IN++Y T+ P
Sbjct: 59 NAIFPEDQLSESLQRYREINADYYTRHP 86


>gi|262203739|ref|YP_003274947.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262087086|gb|ACY23054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 559

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY----EGENFLA----IHPDECIDCGVCEPECPV 52
          M +V+T  C  C    CV VCPV+C +    E E F A    I P+ CIDCG C  ECPV
Sbjct: 1  MAHVITRPC--CNDASCVAVCPVNCIHPTPDEPEFFTAESLYIDPETCIDCGACIDECPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEY 73
          +AI PD   E   E +L+IN++Y
Sbjct: 59 EAIIPDDSLEERDEPYLQINADY 81


>gi|154486719|ref|ZP_02028126.1| hypothetical protein BIFADO_00543 [Bifidobacterium adolescentis
          L2-32]
 gi|154084582|gb|EDN83627.1| hypothetical protein BIFADO_00543 [Bifidobacterium adolescentis
          L2-32]
          Length = 106

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YVV + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVVAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|119025314|ref|YP_909159.1| ferredoxin [Bifidobacterium adolescentis ATCC 15703]
 gi|212716645|ref|ZP_03324773.1| hypothetical protein BIFCAT_01575 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225351077|ref|ZP_03742100.1| hypothetical protein BIFPSEUDO_02660 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|118764898|dbj|BAF39077.1| ferredoxin [Bifidobacterium adolescentis ATCC 15703]
 gi|212660349|gb|EEB20924.1| hypothetical protein BIFCAT_01575 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225158533|gb|EEG71775.1| hypothetical protein BIFPSEUDO_02660 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 106

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YVV + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVVAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|298248993|ref|ZP_06972797.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|298250987|ref|ZP_06974791.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297546997|gb|EFH80864.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297548991|gb|EFH82858.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 86

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 10/83 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTYV+T+ C+  K   CV+VCPVDC         +E    L I+PDECIDCG CEP CPV
Sbjct: 1  MTYVITQPCVGVKDASCVDVCPVDCIHPTQSEAGFESSEQLYINPDECIDCGACEPVCPV 60

Query: 53 DAIKPDTEPGLEL--WLKINSEY 73
           AI  ++    E   ++KIN+++
Sbjct: 61 TAIFEESAVPEEWNQYIKINADF 83


>gi|313902219|ref|ZP_07835626.1| ferredoxin [Thermaerobacter subterraneus DSM 13965]
 gi|313467499|gb|EFR63006.1| ferredoxin [Thermaerobacter subterraneus DSM 13965]
          Length = 82

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 39/60 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   CVEVCPVDC YEGE+   IHP+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGTKDQSCVEVCPVDCIYEGEDQFFIHPEECIGCSACAAVCPVEAIYDEDE 60


>gi|121599359|ref|YP_993807.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|226197927|ref|ZP_03793501.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|121228169|gb|ABM50687.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|225930115|gb|EEH26128.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
          Length = 85

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PG-LELWLKINSEYATQWPNI 80
          +DCF EG NFLAI PDECIDC VC  ECP +AI  + + PG  + +  +N+E A  WP+I
Sbjct: 1  MDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEEDVPGDQQHFTALNAELAKDWPSI 60

Query: 81 TTKKESLPSAAKMDGVKQK 99
          T  K +   A +   V++K
Sbjct: 61 TKTKPAPADADEWKDVQEK 79


>gi|312140996|ref|YP_004008332.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311890335|emb|CBH49653.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 578

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY----EGE----NFLAIHPDECIDCGVCEPECPV 52
           M YV+T+ C  C    CV  CPV+C +    E E      L I P  CIDCG C   CPV
Sbjct: 15  MAYVITQTC--CNDASCVSACPVNCIHPTPEEAEFATTEMLYIEPQACIDCGACVDACPV 72

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWP 78
           +AI P+ +    L+ + +IN++Y T+ P
Sbjct: 73  NAIFPEDQLSESLQRYREINADYYTRHP 100


>gi|261338294|ref|ZP_05966178.1| ferredoxin [Bifidobacterium gallicum DSM 20093]
 gi|270276957|gb|EFA22811.1| ferredoxin [Bifidobacterium gallicum DSM 20093]
          Length = 107

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI   D 
Sbjct: 1  MAYVIAQPCVDVKDKACVDECPVDCIYEGVRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 60 EPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           P    W K   + A Q+ +    K    +A   D
Sbjct: 61 LPEEWAWYK---DAAVQFFDEVGDKGGASAAGPFD 92


>gi|17942775|pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
          Ferredoxins: High Resolution Crystal Structure Of The
          Seven-Iron Ferredoxin From Thermus Thermophilus
          Length = 78

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 41/58 (70%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P+ +
Sbjct: 2  HVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEED 59


>gi|229818391|ref|ZP_04448672.1| hypothetical protein BIFANG_03696 [Bifidobacterium angulatum DSM
          20098]
 gi|229784261|gb|EEP20375.1| hypothetical protein BIFANG_03696 [Bifidobacterium angulatum DSM
          20098]
          Length = 111

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 7  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 61


>gi|171741293|ref|ZP_02917100.1| hypothetical protein BIFDEN_00369 [Bifidobacterium dentium ATCC
          27678]
 gi|283455347|ref|YP_003359911.1| fdxC Ferredoxin [Bifidobacterium dentium Bd1]
 gi|306823586|ref|ZP_07456961.1| ferredoxin [Bifidobacterium dentium ATCC 27679]
 gi|309803019|ref|ZP_07697120.1| ferredoxin [Bifidobacterium dentium JCVIHMP022]
 gi|171276907|gb|EDT44568.1| hypothetical protein BIFDEN_00369 [Bifidobacterium dentium ATCC
          27678]
 gi|283101981|gb|ADB09087.1| fdxC Ferredoxin [Bifidobacterium dentium Bd1]
 gi|304553293|gb|EFM41205.1| ferredoxin [Bifidobacterium dentium ATCC 27679]
 gi|308220486|gb|EFO76797.1| ferredoxin [Bifidobacterium dentium JCVIHMP022]
          Length = 106

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|312200512|ref|YP_004020573.1| ferredoxin [Frankia sp. EuI1c]
 gi|311231848|gb|ADP84703.1| ferredoxin [Frankia sp. EuI1c]
          Length = 117

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 36/60 (60%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+   C+      CVE CP+DC Y G   L IHP+ECIDCG C   CPVDAI  D +
Sbjct: 1  MAYVIGAACVDIMDQSCVEDCPIDCIYTGARKLYIHPEECIDCGACARSCPVDAISWDRD 60


>gi|291457166|ref|ZP_06596556.1| ferredoxin [Bifidobacterium breve DSM 20213]
 gi|291381001|gb|EFE88519.1| ferredoxin [Bifidobacterium breve DSM 20213]
          Length = 106

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|23466115|ref|NP_696718.1| ferredoxin [Bifidobacterium longum NCC2705]
 gi|189440546|ref|YP_001955627.1| Ferredoxin [Bifidobacterium longum DJO10A]
 gi|227546453|ref|ZP_03976502.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239620993|ref|ZP_04664024.1| ferredoxin [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454888|ref|YP_003662032.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|312133853|ref|YP_004001192.1| ferredoxin [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483015|ref|ZP_07942017.1| 4Fe-4S binding domain-containing protein [Bifidobacterium sp.
          12_1_47BFAA]
 gi|322689945|ref|YP_004209679.1| ferredoxin [Bifidobacterium longum subsp. infantis 157F]
 gi|322691886|ref|YP_004221456.1| ferredoxin [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326849|gb|AAN25354.1| ferredoxin [Bifidobacterium longum NCC2705]
 gi|189428981|gb|ACD99129.1| Ferredoxin [Bifidobacterium longum DJO10A]
 gi|227213110|gb|EEI80989.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239516094|gb|EEQ55961.1| ferredoxin [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184320|gb|ADH01202.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|311773144|gb|ADQ02632.1| Ferredoxin [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915516|gb|EFV36936.1| 4Fe-4S binding domain-containing protein [Bifidobacterium sp.
          12_1_47BFAA]
 gi|320456742|dbj|BAJ67364.1| ferredoxin [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461281|dbj|BAJ71901.1| ferredoxin [Bifidobacterium longum subsp. infantis 157F]
          Length = 106

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|213693103|ref|YP_002323689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524564|gb|ACJ53311.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459280|dbj|BAJ69901.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 106

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|15609144|ref|NP_216523.1| ferredoxin FDXA [Mycobacterium tuberculosis H37Rv]
 gi|15841489|ref|NP_336526.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31793187|ref|NP_855680.1| ferredoxin FDXA [Mycobacterium bovis AF2122/97]
 gi|121637891|ref|YP_978114.1| putative ferredoxin fdxA [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148661821|ref|YP_001283344.1| ferredoxin FdxA [Mycobacterium tuberculosis H37Ra]
 gi|148823222|ref|YP_001287976.1| ferredoxin fdxA [Mycobacterium tuberculosis F11]
 gi|167970464|ref|ZP_02552741.1| ferredoxin fdxA [Mycobacterium tuberculosis H37Ra]
 gi|215404186|ref|ZP_03416367.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|215411702|ref|ZP_03420498.1| ferredoxin fdxA [Mycobacterium tuberculosis 94_M4241A]
 gi|215427368|ref|ZP_03425287.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|215430929|ref|ZP_03428848.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|215446220|ref|ZP_03432972.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|218753724|ref|ZP_03532520.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|219557969|ref|ZP_03537045.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|224990385|ref|YP_002645072.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798941|ref|YP_003031942.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 1435]
 gi|254232177|ref|ZP_04925504.1| ferredoxin fdxA [Mycobacterium tuberculosis C]
 gi|254364826|ref|ZP_04980872.1| ferredoxin fdxA [Mycobacterium tuberculosis str. Haarlem]
 gi|254551030|ref|ZP_05141477.1| ferredoxin fdxA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186982|ref|ZP_05764456.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|260201110|ref|ZP_05768601.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|260205290|ref|ZP_05772781.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289443498|ref|ZP_06433242.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|289447624|ref|ZP_06437368.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|289554213|ref|ZP_06443423.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 605]
 gi|289570107|ref|ZP_06450334.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|289574683|ref|ZP_06454910.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289746045|ref|ZP_06505423.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|289750589|ref|ZP_06509967.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|289754113|ref|ZP_06513491.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|289758123|ref|ZP_06517501.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|289762161|ref|ZP_06521539.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|294996943|ref|ZP_06802634.1| ferredoxin fdxA [Mycobacterium tuberculosis 210]
 gi|297634582|ref|ZP_06952362.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 4207]
 gi|297731570|ref|ZP_06960688.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN R506]
 gi|298525509|ref|ZP_07012918.1| ferredoxin [Mycobacterium tuberculosis 94_M4241A]
 gi|306776244|ref|ZP_07414581.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu001]
 gi|306780027|ref|ZP_07418364.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu002]
 gi|306784775|ref|ZP_07423097.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu003]
 gi|306789133|ref|ZP_07427455.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu004]
 gi|306793467|ref|ZP_07431769.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu005]
 gi|306797851|ref|ZP_07436153.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu006]
 gi|306803731|ref|ZP_07440399.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu008]
 gi|306808305|ref|ZP_07444973.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu007]
 gi|306968129|ref|ZP_07480790.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu009]
 gi|306972354|ref|ZP_07485015.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu010]
 gi|307080063|ref|ZP_07489233.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu011]
 gi|307084638|ref|ZP_07493751.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu012]
 gi|313658903|ref|ZP_07815783.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN V2475]
 gi|54037088|sp|P64123|FER_MYCBO RecName: Full=Ferredoxin
 gi|54040765|sp|P64122|FER_MYCTU RecName: Full=Ferredoxin
 gi|1403446|emb|CAA98408.1| PROBABLE FERREDOXIN FDXA [Mycobacterium tuberculosis H37Rv]
 gi|13881731|gb|AAK46340.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31618779|emb|CAD96883.1| PROBABLE FERREDOXIN FDXA [Mycobacterium bovis AF2122/97]
 gi|121493538|emb|CAL72012.1| Probable ferredoxin fdxA [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|124601236|gb|EAY60246.1| ferredoxin fdxA [Mycobacterium tuberculosis C]
 gi|134150340|gb|EBA42385.1| ferredoxin fdxA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505973|gb|ABQ73782.1| ferredoxin FdxA [Mycobacterium tuberculosis H37Ra]
 gi|148721749|gb|ABR06374.1| ferredoxin fdxA [Mycobacterium tuberculosis F11]
 gi|224773498|dbj|BAH26304.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320444|gb|ACT25047.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 1435]
 gi|289416417|gb|EFD13657.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|289420582|gb|EFD17783.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|289438845|gb|EFD21338.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 605]
 gi|289539114|gb|EFD43692.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289543861|gb|EFD47509.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|289686573|gb|EFD54061.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|289691176|gb|EFD58605.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|289694700|gb|EFD62129.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|289709667|gb|EFD73683.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|289713687|gb|EFD77699.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|298495303|gb|EFI30597.1| ferredoxin [Mycobacterium tuberculosis 94_M4241A]
 gi|308215355|gb|EFO74754.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu001]
 gi|308327065|gb|EFP15916.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu002]
 gi|308330506|gb|EFP19357.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu003]
 gi|308334341|gb|EFP23192.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu004]
 gi|308338142|gb|EFP26993.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu005]
 gi|308341834|gb|EFP30685.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu006]
 gi|308345322|gb|EFP34173.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu007]
 gi|308349624|gb|EFP38475.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu008]
 gi|308354253|gb|EFP43104.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu009]
 gi|308358230|gb|EFP47081.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu010]
 gi|308362161|gb|EFP51012.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu011]
 gi|308365815|gb|EFP54666.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu012]
 gi|323719499|gb|EGB28626.1| ferredoxin fdxA [Mycobacterium tuberculosis CDC1551A]
 gi|326903619|gb|EGE50552.1| ferredoxin fdxA [Mycobacterium tuberculosis W-148]
 gi|328458696|gb|AEB04119.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 4207]
          Length = 114

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+      CV+ CPVDC YEG   L I+PDEC+DCG C+P C V+AI
Sbjct: 1  MTYVIGSECVDVMDKSCVQECPVDCIYEGARMLYINPDECVDCGACKPACRVEAI 55


>gi|315226089|ref|ZP_07867877.1| ferredoxin [Parascardovia denticolens DSM 10105]
 gi|315120221|gb|EFT83353.1| ferredoxin [Parascardovia denticolens DSM 10105]
          Length = 119

 Score = 67.4 bits (163), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M YV+ E C+  K   CV+ CPVDC YE    L I+P+EC+DCG CEP CP +AI   D 
Sbjct: 12 MAYVIAEPCVDVKDKACVDECPVDCIYEAPRTLYINPNECVDCGACEPVCPTEAIFYEDD 71

Query: 60 EPGLELWLKINSE 72
           P   +W K  +E
Sbjct: 72 LPDEWVWYKDAAE 84


>gi|317122522|ref|YP_004102525.1| ferredoxin [Thermaerobacter marianensis DSM 12885]
 gi|315592502|gb|ADU51798.1| ferredoxin [Thermaerobacter marianensis DSM 12885]
          Length = 82

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 39/60 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CVEVCPVDC YEGE+   IHP+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCVGTKDQSCVEVCPVDCIYEGEDQFFIHPEECIGCSACAAVCPVEAIYDEDE 60


>gi|269837836|ref|YP_003320064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphaerobacter thermophilus DSM 20745]
 gi|269787099|gb|ACZ39242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sphaerobacter thermophilus DSM 20745]
          Length = 80

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 6/78 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI-- 55
          MTYV+ + CI  K   CVEVCPVDC +   E E +  I+PDECIDCGVC   CPV+AI  
Sbjct: 1  MTYVIAQPCIGLKDASCVEVCPVDCIHSDDEAEQYF-INPDECIDCGVCAEVCPVEAIFF 59

Query: 56 KPDTEPGLELWLKINSEY 73
          + D       +L+IN EY
Sbjct: 60 EDDLPEQWADFLRINREY 77


>gi|167461806|ref|ZP_02326895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 150

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M +V+T  CI  K  DCV VCPVDC +EGE+   I PD CI+CG CE ECPV AI
Sbjct: 74  MAFVITSPCIGEKAADCVSVCPVDCIHEGEDQYYIDPDVCIECGACEVECPVTAI 128


>gi|310288040|ref|YP_003939299.1| Ferredoxin [Bifidobacterium bifidum S17]
 gi|309251977|gb|ADO53725.1| Ferredoxin [Bifidobacterium bifidum S17]
          Length = 107

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 55


>gi|294786512|ref|ZP_06751766.1| ferredoxin [Parascardovia denticolens F0305]
 gi|294485345|gb|EFG32979.1| ferredoxin [Parascardovia denticolens F0305]
          Length = 108

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M YV+ E C+  K   CV+ CPVDC YE    L I+P+EC+DCG CEP CP +AI   D 
Sbjct: 1  MAYVIAEPCVDVKDKACVDECPVDCIYEAPRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 60 EPGLELWLKINSE 72
           P   +W K  +E
Sbjct: 61 LPDEWVWYKDAAE 73


>gi|157830220|pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
          Structures
          Length = 77

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 37/54 (68%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI
Sbjct: 1  AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAI 54


>gi|224283694|ref|ZP_03647016.1| Ferredoxin [Bifidobacterium bifidum NCIMB 41171]
 gi|311064916|ref|YP_003971642.1| ferredoxin [Bifidobacterium bifidum PRL2010]
 gi|313140850|ref|ZP_07803043.1| ferredoxin [Bifidobacterium bifidum NCIMB 41171]
 gi|310867236|gb|ADP36605.1| FdxC Ferredoxin [Bifidobacterium bifidum PRL2010]
 gi|313133360|gb|EFR50977.1| ferredoxin [Bifidobacterium bifidum NCIMB 41171]
          Length = 107

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI   D 
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 60 EPGLELWLK 68
           P    W K
Sbjct: 61 LPDEWAWYK 69


>gi|226361046|ref|YP_002778824.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239531|dbj|BAH49879.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 553

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENF-----LAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +   E   F     L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQAC--CNDASCVSACPVNCIHPTPEEREFAQTEMLHIDPETCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          DAI P+ +    L  +  IN+EY T  P
Sbjct: 59 DAIFPEDKLVGSLARYKDINAEYYTTNP 86


>gi|111018949|ref|YP_701921.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110818479|gb|ABG93763.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 553

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENF-----LAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +   E   F     L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQAC--CNDASCVSACPVNCIHPTPEEREFAQTEMLHIDPETCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          DAI P+ +    L  +  IN+EY T  P
Sbjct: 59 DAIFPEDKLIGSLTRYKDINAEYYTTNP 86


>gi|15865463|emb|CAC81334.1| putative ferredoxin [Pseudomonas sp. KIE171]
          Length = 112

 Score = 67.0 bits (162), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           M YV+++ CI  +   CV+VCPVDC YE E  L I PDEC +CG CE  CPV AI   D 
Sbjct: 1   MPYVISDPCIKSRDQACVDVCPVDCIYEAEGRLWIQPDECTECGACESVCPVTAICYVDA 60

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           E   +   +    + T  P       S   A K+  +K  + +  
Sbjct: 61  ESDDQDLREAREFFDTVLPGCDGPIGSPRGAQKVGRIKSDHPRVL 105


>gi|227874543|ref|ZP_03992706.1| possible ferredoxin [Mobiluncus mulieris ATCC 35243]
 gi|269977657|ref|ZP_06184624.1| ferredoxin [Mobiluncus mulieris 28-1]
 gi|306817830|ref|ZP_07451569.1| ferredoxin [Mobiluncus mulieris ATCC 35239]
 gi|307701395|ref|ZP_07638415.1| ferredoxin [Mobiluncus mulieris FB024-16]
 gi|227844752|gb|EEJ54898.1| possible ferredoxin [Mobiluncus mulieris ATCC 35243]
 gi|269934260|gb|EEZ90827.1| ferredoxin [Mobiluncus mulieris 28-1]
 gi|304649309|gb|EFM46595.1| ferredoxin [Mobiluncus mulieris ATCC 35239]
 gi|307613410|gb|EFN92659.1| ferredoxin [Mobiluncus mulieris FB024-16]
          Length = 106

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTYV+ + C+  K   CV+ CPVDC YEG   L I+P EC+DCG CE  CP +AI  + D
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGARTLYINPLECVDCGACEAVCPTEAIFYEDD 60

Query: 59 TEPGLELWLKINSEY 73
               E +L+ N ++
Sbjct: 61 LPAEWEDYLRANRDF 75


>gi|227501607|ref|ZP_03931656.1| ferredoxin [Corynebacterium accolens ATCC 49725]
 gi|306835772|ref|ZP_07468773.1| ferredoxin [Corynebacterium accolens ATCC 49726]
 gi|227077632|gb|EEI15595.1| ferredoxin [Corynebacterium accolens ATCC 49725]
 gi|304568346|gb|EFM43910.1| ferredoxin [Corynebacterium accolens ATCC 49726]
          Length = 95

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +   E W+  N   A  
Sbjct: 5  CVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDDVPDE-WIDYNDANAAF 63

Query: 77 WPNITT 82
          + ++ +
Sbjct: 64 FDDLGS 69


>gi|269836661|ref|YP_003318889.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphaerobacter thermophilus DSM 20745]
 gi|269785924|gb|ACZ38067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sphaerobacter thermophilus DSM 20745]
          Length = 80

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 48/78 (61%), Gaps = 6/78 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI-- 55
          MTYV+ E CI  K   CVEVCPVDC +   E E +  I PDECIDCGVC   CPV+AI  
Sbjct: 1  MTYVIAEPCIGVKDASCVEVCPVDCIHSDDEAEQYY-IDPDECIDCGVCAEVCPVEAIFF 59

Query: 56 KPDTEPGLELWLKINSEY 73
          + D       +L+IN EY
Sbjct: 60 EDDLPEQWADFLRINREY 77


>gi|296165553|ref|ZP_06848081.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899092|gb|EFG78570.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 539

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 35/63 (55%), Gaps = 10/63 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTYV+T++C  CK   CV VCPVDC           G   L I P  CIDCG C   CPV
Sbjct: 1  MTYVITQSC--CKDASCVPVCPVDCIRPVGATGEITGTEMLYIDPVTCIDCGACVDACPV 58

Query: 53 DAI 55
          DAI
Sbjct: 59 DAI 61


>gi|331699698|ref|YP_004335937.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326954387|gb|AEA28084.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 112

 Score = 66.6 bits (161), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M+YV+  +C+      CV+ CPVDC Y G     ++P ECIDCG CEP CPV+AI P+++
Sbjct: 1  MSYVIGASCVDVTDRACVDECPVDCIYVGGRMAYVNPTECIDCGACEPVCPVEAIVPESD 60


>gi|226361233|ref|YP_002779011.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239718|dbj|BAH50066.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 561

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV VCPVDC +   N         L I P  CIDCG C   CPV
Sbjct: 1  MAHVVTQSC--CNDASCVAVCPVDCIHPTPNEPGYGRAEMLYIDPVGCIDCGACIDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEY 73
          DAI PD +  P    + +IN+ Y
Sbjct: 59 DAILPDYDLTPETARYEEINAAY 81


>gi|295696289|ref|YP_003589527.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          tusciae DSM 2912]
 gi|295411891|gb|ADG06383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          tusciae DSM 2912]
          Length = 78

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 38/55 (69%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T  CI  K  +CVEVCPVD  +EGE+   I PD CIDCG CEP CPV AI
Sbjct: 1  MAFVITSPCIDEKAAECVEVCPVDAIHEGEDQYYIDPDTCIDCGACEPVCPVSAI 55


>gi|157830233|pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
          Average Structure
          Length = 77

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 37/53 (69%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI
Sbjct: 2  YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAI 54


>gi|32476854|ref|NP_869848.1| ferredoxin [Rhodopirellula baltica SH 1]
 gi|32447402|emb|CAD78991.1| ferredoxin [Rhodopirellula baltica SH 1]
          Length = 84

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT VVT+ CI CK   C+ VCP DCF+E E  + I+PD+C+DC  C PECP +AI
Sbjct: 1  MTMVVTQPCIGCKDKACLTVCPADCFHEDEQMVYINPDDCVDCEACIPECPTEAI 55


>gi|207724517|ref|YP_002254914.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum MolK2]
 gi|207739155|ref|YP_002257548.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum IPO1609]
 gi|206589739|emb|CAQ36700.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum MolK2]
 gi|206592528|emb|CAQ59434.1| probable ferredoxin protein 3fe-4s [Ralstonia solanacearum IPO1609]
          Length = 96

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYATQ--WP 78
           +DCF+ G NFL I PD CIDC +C PECPV AI  + D       ++ +N++ + +  WP
Sbjct: 1   MDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAEADVPADQREFIALNAQLSRRPDWP 60

Query: 79  NITTKKESLPSAAKMDGVKQKYEKYF-SPNPGGKN 112
            +T  +  L   A+   VK K      +P PG + 
Sbjct: 61  RLTQVQPPLADHARWAQVKDKRSTLLIAPEPGTQT 95


>gi|327537530|gb|EGF24249.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Rhodopirellula baltica WH47]
          Length = 84

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT VVT+ CI CK   C+ VCP DCF+E E  + I+PD+C+DC  C PECP +AI
Sbjct: 1  MTMVVTQPCIGCKDKACLTVCPADCFHEDEQMVYINPDDCVDCEACIPECPTEAI 55


>gi|6729719|pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
          Bacillus Schlegelii Fe7s8 Ferredoxin
 gi|6729750|pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
          Bacillus Schlegelii Fe7s8 Ferredoxin
          Length = 77

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 37/54 (68%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI
Sbjct: 1  AYVITEPCIGTKCASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAI 54


>gi|119952330|ref|YP_949931.1| putative ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
 gi|119951460|gb|ABM10370.1| putative Ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
          Length = 531

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC---------FYEGENFLAIHPDECIDCGVCEPECP 51
          MTYV+T  C  C    C+ VCPV C         F   E  L I P  CIDCG C  ECP
Sbjct: 1  MTYVITHGC--CSDASCIPVCPVQCIRPRPGDPDFTTAEQ-LYIDPATCIDCGACMDECP 57

Query: 52 VDAIKP--DTEPGLELWLKINSEYATQWPNITTKKESLP 88
          V AI P  D    L  +L +N++Y    P + +     P
Sbjct: 58 VSAIHPEWDLPDELSEYLAVNADYYVDNPIVESSPVEPP 96


>gi|317122344|ref|YP_004102347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter marianensis DSM 12885]
 gi|315592324|gb|ADU51620.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter marianensis DSM 12885]
          Length = 78

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 39/60 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   C EVCPVDC YEGE+ L I+PDECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGVKDKSCQEVCPVDCIYEGEDQLYINPDECIGCSACAAVCPVEAIYDEDE 60


>gi|108804033|ref|YP_643970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108765276|gb|ABG04158.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 79

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 40/60 (66%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+TE CI  K   CVEV PVDC  +      I+P+ECIDCG CEPEC V+AI P+ E
Sbjct: 1  MPYVITEPCIGTKDQSCVEVYPVDCICDAGEQFMINPEECIDCGACEPECTVEAIYPEDE 60


>gi|262201358|ref|YP_003272566.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262084705|gb|ACY20673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 527

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 12/95 (12%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDA 54
          +V+T++C  C    CV VCPV+C         +   + L I P+ CIDCG C   CPVDA
Sbjct: 2  FVITQSC--CSDAACVSVCPVNCIHPTPEERGFGSSDILHIDPEACIDCGACADACPVDA 59

Query: 55 IKPDTEPGL--ELWLKINSEYATQWPNITTKKESL 87
          I P    G   ++++ IN+++    P + +   S+
Sbjct: 60 IYPADRLGTRDKVFIDINADFYKNNPAVKSGWSSV 94


>gi|331698058|ref|YP_004334297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326952747|gb|AEA26444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 113

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYVVT+ C+      C+E CPVDC YEG+  + I+P ECIDCG CE  CP  A   D
Sbjct: 1  MTYVVTDACVDVLDRSCLEECPVDCIYEGDRKMYINPVECIDCGACEQACPTAAAVAD 58


>gi|221633402|ref|YP_002522627.1| hypothetical protein trd_1422 [Thermomicrobium roseum DSM 5159]
 gi|221155410|gb|ACM04537.1| conserved domain protein [Thermomicrobium roseum DSM 5159]
          Length = 83

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 6/78 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI-- 55
          MTYV+ E CI  K   CVEVCPVDC     E E +  I+PDECIDCGVC   CPV+AI  
Sbjct: 1  MTYVIAEPCIGVKDASCVEVCPVDCIKSDPEAEQYF-INPDECIDCGVCAEVCPVEAIYF 59

Query: 56 KPDTEPGLELWLKINSEY 73
          + D       +L+ N EY
Sbjct: 60 EDDLPEQWRHYLQKNREY 77


>gi|145220987|ref|YP_001131665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145213473|gb|ABP42877.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 142

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 26  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 85

Query: 61  -PGLEL-WLKINSEYAT 75
            P  EL +L  N+ + T
Sbjct: 86  LPDEELAFLDDNAAFFT 102


>gi|313679357|ref|YP_004057096.1| ferredoxin [Oceanithermus profundus DSM 14977]
 gi|313152072|gb|ADR35923.1| ferredoxin [Oceanithermus profundus DSM 14977]
          Length = 82

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +++ E C+  K   CVEVCPV+C YE     + L IHP+ECIDCG C P CPV AI P
Sbjct: 1  MAHIICEPCVGVKDKACVEVCPVECIYEAPAEYDMLYIHPEECIDCGACVPACPVSAIFP 60

Query: 58 DTE 60
          + +
Sbjct: 61 EED 63


>gi|254818988|ref|ZP_05223989.1| putative ferredoxin FdxA [Mycobacterium intracellulare ATCC
          13950]
          Length = 106

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE-Y 73
          CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + D    L+  L  N+  +
Sbjct: 5  CVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDDLPEDLQPHLADNAAFF 64

Query: 74 ATQWPNITTKKESLPSAAKM 93
          A   P       S   AAK+
Sbjct: 65 AETLPGRDEPLGSPGGAAKV 84


>gi|282862944|ref|ZP_06272004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
 gi|282561926|gb|EFB67468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
          Length = 548

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENF-----LAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    C+ VCPV+C +   E  +F     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCIAVCPVNCIHPTPEERDFGSTEMLHIDPKSCIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEY 73
          DAI P       L  + +IN+ Y
Sbjct: 59 DAIFPVESLTGALREYEQINAAY 81


>gi|307323385|ref|ZP_07602595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
 gi|306890874|gb|EFN21850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
          Length = 106

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 37/60 (61%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+  +C+      C+E CPVDC YEGE  L I+P ECIDCG CE  CP  AI  D +
Sbjct: 1  MAYVIGASCVDIMDRSCMEECPVDCIYEGERKLYINPVECIDCGACEVACPEQAITVDRK 60


>gi|315442042|ref|YP_004074921.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|315260345|gb|ADT97086.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 117

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 1  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 60

Query: 61 -PGLEL-WLKINSEYATQWPNITTKKESL---PSAAKMDGV 96
           P  EL +L  N+ + T    ++ + E L     AAK+  V
Sbjct: 61 LPDEELAFLDDNAAFFTT--TLSGRDEPLGDPGGAAKLGRV 99


>gi|158318597|ref|YP_001511105.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Frankia sp. EAN1pec]
 gi|4325127|gb|AAD17275.1| ferredoxin I [Frankia sp. EuIK1]
 gi|158114002|gb|ABW16199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EAN1pec]
          Length = 113

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT  CI  K T C++ CPVD  YEG+  L I+P+EC +CG C   CP+ AI  D E
Sbjct: 1  MPYVVTSPCIDVKDTACLDECPVDAIYEGDRKLYINPNECTECGACASACPIGAIMLDLE 60

Query: 61 -PGLEL-WLKINSEYATQWPNITTKKESL--PSAAKMDG 95
           P  E  ++K   E+ T+   +  + E L  P  AK  G
Sbjct: 61 VPKAERPFVKSEKEFFTKV--LPGRDEPLGDPGGAKTVG 97


>gi|111223262|ref|YP_714056.1| ferredoxin [Frankia alni ACN14a]
 gi|111150794|emb|CAJ62498.1| Ferredoxin [Frankia alni ACN14a]
          Length = 115

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 45/87 (51%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T  CI  K   C+E CP DC YEG+  + I+PDEC +CG C   CPV A   D  
Sbjct: 5  MPYVITAACIDVKDGSCLEGCPADCIYEGDRKMYINPDECTECGACAVSCPVGAALSDDR 64

Query: 61 PGLELWLKINSEYATQWPNITTKKESL 87
             +    I+SE A     +  + E L
Sbjct: 65 VKAKDKEFIDSEAAFFTDILPGRDEPL 91


>gi|326778460|ref|ZP_08237725.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus
          XylebKG-1]
 gi|326658793|gb|EGE43639.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus
          XylebKG-1]
          Length = 554

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEY 73
          DAI P      G   +  IN+ Y
Sbjct: 59 DAIFPVDALSAGQREYADINAAY 81


>gi|182437825|ref|YP_001825544.1| putative ferredoxin reductase [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178466341|dbj|BAG20861.1| putative ferredoxin reductase [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 554

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEY 73
          DAI P      G   +  IN+ Y
Sbjct: 59 DAIFPVDALSAGQREYADINAAY 81


>gi|269784345|emb|CBH51374.1| ferredoxin [Amycolatopsis balhimycina]
          Length = 137

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 34/55 (61%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+   C+  K   CV  CP DC YEG   L IHPDEC++CG CE  CPV A+
Sbjct: 1  MAYVIGLPCVDVKDRACVAECPTDCIYEGARSLYIHPDECMECGACEVVCPVGAV 55


>gi|229541517|ref|ZP_04430577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          coagulans 36D1]
 gi|229325937|gb|EEN91612.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          coagulans 36D1]
          Length = 82

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 39/55 (70%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T+ CI  K  +CV+VCPVDC  EGE+   I PD CIDCG C+  CPV+AI
Sbjct: 5  MAFVITQPCIGEKAAECVDVCPVDCIAEGEDQYFIDPDICIDCGACQAVCPVEAI 59


>gi|120401325|ref|YP_951154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium vanbaalenii PYR-1]
 gi|119954143|gb|ABM11148.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium vanbaalenii PYR-1]
          Length = 117

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 1  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 60

Query: 61 -PGLEL-WLKINSEYATQ 76
           P  E+ +L+ N+ + T 
Sbjct: 61 LPDEEMEFLEDNAAFFTM 78


>gi|118467681|ref|YP_889914.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium smegmatis
          str. MC2 155]
 gi|118168968|gb|ABK69864.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          smegmatis str. MC2 155]
          Length = 557

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 18/103 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I PD C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPDACVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           AI PDT  EP    +++IN+ +   +P    ++  LP  +K+
Sbjct: 59 GAIAPDTRLEPRQLPFVEINAAF---YPK---REGKLPPTSKL 95


>gi|320012396|gb|ADW07246.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces flavogriseus ATCC 33331]
          Length = 556

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENF-----LAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +   E  +F     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCVSVCPVNCIHPTPEEPDFGRTEMLYIDPRSCIDCGACADACPV 58

Query: 53 DAIKP-DTEPGLEL-WLKINSEY 73
          +A+ P D+ P  +  +  IN+EY
Sbjct: 59 EAVFPVDSLPAAQAEYGPINAEY 81


>gi|56964420|ref|YP_176151.1| ferredoxin [Bacillus clausii KSM-K16]
 gi|56910663|dbj|BAD65190.1| ferredoxin [Bacillus clausii KSM-K16]
          Length = 79

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+   CI  K  +CV+VCPVDC  EGE+   I+PD CIDCG C+  CPVDAI  + E
Sbjct: 1  MAFVILSPCIGEKAGECVDVCPVDCIEEGEDQYFINPDICIDCGACQGVCPVDAIVEEYE 60

Query: 61 --PGLELWLKINSEY 73
            P  + +LK   E+
Sbjct: 61 MAPEDQKFLKKAEEF 75


>gi|296393262|ref|YP_003658146.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Segniliparus rotundus DSM 44985]
 gi|296180409|gb|ADG97315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Segniliparus rotundus DSM 44985]
          Length = 112

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 36/55 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +VV E C+      CVE CPVDC Y G+  + I+PD CIDCG CE  CPV+AI
Sbjct: 1  MAFVVAEPCVDVIDRSCVEECPVDCMYLGKRMVYINPDLCIDCGACESVCPVEAI 55


>gi|239942291|ref|ZP_04694228.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL
          15998]
 gi|239988757|ref|ZP_04709421.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL
          11379]
 gi|291445751|ref|ZP_06585141.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
 gi|291348698|gb|EFE75602.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
          Length = 556

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEY 73
          DAI P      G   +  IN+ Y
Sbjct: 59 DAIFPVDSLSAGQREYADINAAY 81


>gi|307610629|emb|CBX00217.1| hypothetical protein LPW_19621 [Legionella pneumophila 130b]
          Length = 78

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           IHPDECIDC +CEPECPV+AI  + D     + + ++N+E +  WPNIT KK++   A  
Sbjct: 2   IHPDECIDCALCEPECPVNAIVSEDDLTEEQQQFKELNAELSKTWPNITAKKDAPSDAKD 61

Query: 93  MDGVKQKYE 101
            + VK K +
Sbjct: 62  WEEVKDKLQ 70


>gi|148359470|ref|YP_001250677.1| ferredoxin I [Legionella pneumophila str. Corby]
 gi|148281243|gb|ABQ55331.1| ferredoxin I [Legionella pneumophila str. Corby]
          Length = 78

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           IHPDECIDC +CEPECPV+AI  + D     + + ++N+E +  WPNIT KK++   A  
Sbjct: 2   IHPDECIDCALCEPECPVNAIVSEDDLTDEQQQFKELNAELSKTWPNITAKKDAPSDAKD 61

Query: 93  MDGVKQKYE 101
            + VK K +
Sbjct: 62  WEEVKDKLQ 70


>gi|328887041|emb|CCA60280.1| Ferredoxin or Ferredoxin--NADP(+) reductase,actinobacterial
          (eukaryote) type [Streptomyces venezuelae ATCC 10712]
          Length = 552

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENF-----LAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +   E  +F     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEEPDFGTTEMLYIDPKSCIDCGACADACPV 58

Query: 53 DAIKP 57
          DAI P
Sbjct: 59 DAIFP 63


>gi|108799685|ref|YP_639882.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119868795|ref|YP_938747.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. KMS]
 gi|126435329|ref|YP_001071020.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|108770104|gb|ABG08826.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119694884|gb|ABL91957.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. KMS]
 gi|126235129|gb|ABN98529.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 114

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+   C+      CV  CPVDC YEG+  + I+PDEC+DCG C   C +DAI  +T+
Sbjct: 1  MTYVIGSACVDVVDKSCVPECPVDCIYEGDRVMYINPDECVDCGACRVICKMDAIFYETD 60


>gi|313902860|ref|ZP_07836256.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter subterraneus DSM 13965]
 gi|313466795|gb|EFR62313.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter subterraneus DSM 13965]
          Length = 78

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   C EVCPVDC YEG++ L I+P+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGVKDKSCQEVCPVDCIYEGDDQLYINPEECIGCSACAAVCPVEAIYDEDE 60


>gi|54024557|ref|YP_118799.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54016065|dbj|BAD57435.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 554

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPVDC         +     L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQRC--CNDASCVAECPVDCIRPRPEDPEFTSAEMLYIDPETCIDCGACFEACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNIT 81
           A+  + E    L+ + +IN+++  + P  T
Sbjct: 59 GAVYAEDELPAQLDRYREINADWFARHPMTT 89


>gi|239981284|ref|ZP_04703808.1| putative ferredoxin reductase [Streptomyces albus J1074]
 gi|291453142|ref|ZP_06592532.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
 gi|291356091|gb|EFE82993.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
          Length = 535

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRSCIDCGACADACPV 58

Query: 53 DAIKP 57
          DAI P
Sbjct: 59 DAIFP 63


>gi|23099185|ref|NP_692651.1| ferredoxin [3Fe-4S][4Fe-4S] [Oceanobacillus iheyensis HTE831]
 gi|22777413|dbj|BAC13686.1| ferredoxin [3Fe-4S][4Fe-4S] [Oceanobacillus iheyensis HTE831]
          Length = 79

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T  C   K  +CVEVCPVDC  EG++   I PD CIDCG CE  CPV+AI
Sbjct: 1  MAFVITSPCKTEKAGECVEVCPVDCIEEGKDMFYIEPDICIDCGACEAVCPVEAI 55


>gi|54027063|ref|YP_121305.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54018571|dbj|BAD59941.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 556

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPVDC         +     L I PD CIDCG C   CPV
Sbjct: 1  MAYVITQRC--CNDASCVSECPVDCIRPTPDQPEFATTEMLYIDPDTCIDCGACVDACPV 58

Query: 53 DAI--KPDTEPGLELWLKINSEYATQWP 78
          +AI  + D    L  +  +N+ Y  + P
Sbjct: 59 EAIFSEDDLTASLARFRDVNAAYFQRHP 86


>gi|300785297|ref|YP_003765588.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
 gi|299794811|gb|ADJ45186.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
          Length = 489

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C         +   + L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CTDATCVSVCPVNCIHPTPDEPDFGTTDLLYIDPVTCIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEY 73
          DAI P  D    L  + +IN+EY
Sbjct: 59 DAIFPAGDLTGPLRAYEQINAEY 81


>gi|183982996|ref|YP_001851287.1| ferredoxin FdxA_2 [Mycobacterium marinum M]
 gi|183176322|gb|ACC41432.1| ferredoxin FdxA_2 [Mycobacterium marinum M]
          Length = 114

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTYV+   C+      C + CPVDC YEG   + I+PDEC+DCG C+  C V AI
Sbjct: 1  MTYVIGRECVDVAEKSCTQECPVDCIYEGARTMYINPDECVDCGACKTTCRVGAI 55


>gi|288918987|ref|ZP_06413329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
 gi|288349633|gb|EFC83868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
          Length = 113

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT  CI  K   C++ CPVD  YEG   L I+P+EC +CG C   CP+ AI  D E
Sbjct: 1  MPYVVTSPCIDVKDGACLDECPVDAIYEGARKLYINPNECTECGACASACPIGAIMLDLE 60

Query: 61 -PGLEL-WLKINSEYATQWPNITTKKESL--PSAAKMDG 95
           P  E  ++K + E+ ++   +  + E L  P  AK  G
Sbjct: 61 VPKPERPFVKTDKEFFSKA--LPGRDEPLGDPGGAKAAG 97


>gi|226309118|ref|YP_002769078.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226188235|dbj|BAH36339.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 575

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 14/84 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLHIDPQACVDCGACVSACPV 58

Query: 53 DAIKPD---TEPGLELWLKINSEY 73
          DAI P+   T+P   ++L IN+++
Sbjct: 59 DAIVPESKLTDPQ-RVFLSINADF 81


>gi|289555333|ref|ZP_06444543.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN 605]
 gi|289439965|gb|EFD22458.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN 605]
          Length = 550

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWP 78
           AI P+T    E   +++IN+ Y  + P
Sbjct: 59 SAIAPNTRLDFEQLPFVEINASYYPKRP 86


>gi|229491834|ref|ZP_04385655.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
 gi|229321515|gb|EEN87315.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
          Length = 575

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 14/84 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLHIDPQACVDCGACVSACPV 58

Query: 53 DAIKPD---TEPGLELWLKINSEY 73
          DAI P+   T+P   ++L IN+++
Sbjct: 59 DAIVPESKLTDPQ-RVFLSINADF 81


>gi|297195797|ref|ZP_06913195.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
          25486]
 gi|297152954|gb|EFH32068.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 452

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCVAVCPVNCIHPTPEERAFGSTEMLYIDPRSCIDCGACADACPV 58

Query: 53 DAIKP-DTEPGLEL-WLKINSEY 73
          DAI P D+  G +  +  IN+ Y
Sbjct: 59 DAIFPVDSLSGSQQEYAAINAAY 81


>gi|86741719|ref|YP_482119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86568581|gb|ABD12390.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 111

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+T  CI  K   C+E CP DC YEG+  + I+PDEC +CG C   CPV A   D
Sbjct: 1  MPFVITAACIDVKDGSCLEGCPADCIYEGDRKMYINPDECTECGACAVSCPVGAAISD 58


>gi|218288541|ref|ZP_03492818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|258511869|ref|YP_003185303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|218241198|gb|EED08373.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|257478595|gb|ACV58914.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
          Length = 79

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 36/55 (65%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T  CI  K  DCVE CPVD  +EG +   I PD CIDC  CEP CPV+AI
Sbjct: 1  MPFVITSPCIGEKAADCVETCPVDAIHEGPDQYYIDPDLCIDCAACEPVCPVNAI 55


>gi|332973090|gb|EGK11025.1| ferredoxin [Desmospora sp. 8437]
          Length = 77

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          M +V+T  C   K  +CVEVCPVDC +  E    I PD CI+CG CEP CPV+AI + D 
Sbjct: 1  MAFVITSACKDEKAAECVEVCPVDCIHGDEVMYYIDPDTCIECGACEPVCPVEAIYEEDM 60

Query: 60 EPGLEL-WLKINSEY 73
           P  E  +++IN+ +
Sbjct: 61 VPEEEKEYIQINANF 75


>gi|56964940|ref|YP_176671.1| ferredoxin [Bacillus clausii KSM-K16]
 gi|56911183|dbj|BAD65710.1| ferredoxin [Bacillus clausii KSM-K16]
          Length = 79

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M++V+   CI  K  +C EVCPVDC  EG++   I+PD CIDCG C+  CPVDAI  + E
Sbjct: 1  MSFVILSPCIGEKAGECAEVCPVDCIEEGDDQYFINPDICIDCGACQGVCPVDAIVEEYE 60


>gi|326329869|ref|ZP_08196186.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325952336|gb|EGD44359.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 560

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC---------FYEGENFLAIHPDECIDCGVCEPECP 51
          M +VVT++C  C    CV  CPV+C         F E E  L +    C+DCG C   CP
Sbjct: 1  MPHVVTQSC--CADASCVVACPVNCIHPAPGEPGFGEAE-MLYVDAKSCVDCGACVTACP 57

Query: 52 VDAIKPDT--EPGLELWLKINSEYATQWPN 79
           DAI P T    G + +L IN+EY   +P+
Sbjct: 58 ADAIVPHTTLSEGQKPFLAINAEYFEVFPH 87


>gi|296120281|ref|YP_003628059.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296012621|gb|ADG65860.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 84

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
          MT VVTE C  CK   C+ VCP DCF+E    + I+P+ECIDC  C  ECPV AI   D 
Sbjct: 1  MTMVVTEPCRGCKDKACLVVCPCDCFHEDAEMVYINPEECIDCDACVSECPVSAIFHEDN 60

Query: 60 EPGL-ELWLKINSEYATQWP 78
           P   + ++++N++ +   P
Sbjct: 61 VPAQWQHFVELNAQRSRVCP 80


>gi|302547666|ref|ZP_07300008.1| ferredoxin [Streptomyces hygroscopicus ATCC 53653]
 gi|302465284|gb|EFL28377.1| ferredoxin [Streptomyces himastatinicus ATCC 53653]
          Length = 108

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 34/58 (58%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+   C+      C+E CPVDC YEG   L I+P ECIDCG CE  CP  AI  D
Sbjct: 1  MAYVIGPACVDIMDRSCMEECPVDCIYEGMRKLYINPVECIDCGACETACPEQAIAVD 58


>gi|306792261|ref|ZP_07430563.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu005]
 gi|308339184|gb|EFP28035.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu005]
          Length = 575

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWP 78
           AI P+T    E   +++IN+ Y  + P
Sbjct: 59 SAIAPNTRLDFEQLPFVEINASYYPKRP 86


>gi|15608026|ref|NP_215401.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium tuberculosis
          H37Rv]
 gi|15840300|ref|NP_335337.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
          tuberculosis CDC1551]
 gi|31792074|ref|NP_854567.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium bovis
          AF2122/97]
 gi|121636809|ref|YP_977032.1| putative NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium
          bovis BCG str. Pasteur 1173P2]
 gi|148660663|ref|YP_001282186.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          tuberculosis H37Ra]
 gi|148822094|ref|YP_001286848.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          F11]
 gi|167968347|ref|ZP_02550624.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          H37Ra]
 gi|215402685|ref|ZP_03414866.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          02_1987]
 gi|215410472|ref|ZP_03419280.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          94_M4241A]
 gi|215426152|ref|ZP_03424071.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T92]
 gi|215429743|ref|ZP_03427662.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          EAS054]
 gi|218752551|ref|ZP_03531347.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          GM 1503]
 gi|219556751|ref|ZP_03535827.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T17]
 gi|224989280|ref|YP_002643967.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253800092|ref|YP_003033093.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN 1435]
 gi|254231194|ref|ZP_04924521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          C]
 gi|254363817|ref|ZP_04979863.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          str. Haarlem]
 gi|254549863|ref|ZP_05140310.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          '98-R604 INH-RIF-EM']
 gi|260185781|ref|ZP_05763255.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          CPHL_A]
 gi|260199906|ref|ZP_05767397.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T46]
 gi|260204088|ref|ZP_05771579.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          K85]
 gi|289442296|ref|ZP_06432040.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T46]
 gi|289446451|ref|ZP_06436195.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          CPHL_A]
 gi|289568850|ref|ZP_06449077.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T17]
 gi|289573512|ref|ZP_06453739.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          K85]
 gi|289744616|ref|ZP_06503994.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          02_1987]
 gi|289749408|ref|ZP_06508786.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T92]
 gi|289752941|ref|ZP_06512319.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          EAS054]
 gi|289761017|ref|ZP_06520395.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          GM 1503]
 gi|294996366|ref|ZP_06802057.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          210]
 gi|297633403|ref|ZP_06951183.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN 4207]
 gi|297730388|ref|ZP_06959506.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN R506]
 gi|298524378|ref|ZP_07011787.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          94_M4241A]
 gi|313657715|ref|ZP_07814595.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN V2475]
 gi|54037133|sp|P65528|FPRB_MYCTU RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
          Short=FNR
 gi|54037134|sp|P65529|FPRB_MYCBO RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
          Short=FNR
 gi|1314025|emb|CAA97393.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
          REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
          [Mycobacterium tuberculosis H37Rv]
 gi|13880462|gb|AAK45151.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
          tuberculosis CDC1551]
 gi|31617661|emb|CAD93771.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
          REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
          [Mycobacterium bovis AF2122/97]
 gi|121492456|emb|CAL70924.1| Probable nadph:adrenodoxin oxidoreductase fprB [Mycobacterium
          bovis BCG str. Pasteur 1173P2]
 gi|124600253|gb|EAY59263.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          C]
 gi|134149331|gb|EBA41376.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          str. Haarlem]
 gi|148504815|gb|ABQ72624.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          tuberculosis H37Ra]
 gi|148720621|gb|ABR05246.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          F11]
 gi|224772393|dbj|BAH25199.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253321595|gb|ACT26198.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN 1435]
 gi|289415215|gb|EFD12455.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T46]
 gi|289419409|gb|EFD16610.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          CPHL_A]
 gi|289537943|gb|EFD42521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          K85]
 gi|289542604|gb|EFD46252.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T17]
 gi|289685144|gb|EFD52632.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          02_1987]
 gi|289689995|gb|EFD57424.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T92]
 gi|289693528|gb|EFD60957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          EAS054]
 gi|289708523|gb|EFD72539.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          GM 1503]
 gi|298494172|gb|EFI29466.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          94_M4241A]
 gi|323720595|gb|EGB29673.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          CDC1551A]
 gi|326904895|gb|EGE51828.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          W-148]
 gi|328459830|gb|AEB05253.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          KZN 4207]
          Length = 575

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWP 78
           AI P+T    E   +++IN+ Y  + P
Sbjct: 59 SAIAPNTRLDFEQLPFVEINASYYPKRP 86


>gi|317509391|ref|ZP_07967010.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
 gi|316252314|gb|EFV11765.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus
          ATCC BAA-974]
          Length = 548

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDGSCVFACPVNCIHPTPDEPDFLTAEMLHIDPAACVDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEY 73
          +AI PDT+  P    +L++N+ Y
Sbjct: 59 EAIVPDTKLAPKQLPFLELNASY 81


>gi|134100924|ref|YP_001106585.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL
          2338]
 gi|291003463|ref|ZP_06561436.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL
          2338]
 gi|133913547|emb|CAM03660.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL
          2338]
          Length = 508

 Score = 60.5 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M Y +T+ C  C    CV+VCPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1  MAYAITQTC--CNDASCVKVCPVNCIHPTPDEPDFGTAEMLHIDPATCIDCGACADACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEY 73
          +AI P  E    L+ + ++N+ Y
Sbjct: 59 EAIFPVEELTGPLKPYAEVNAAY 81


>gi|296169651|ref|ZP_06851269.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295895648|gb|EFG75344.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 563

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 16/103 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSAAKM 93
           AI PDT    +   +++IN+ +  + P    + E +P  +K+
Sbjct: 59 GAIAPDTRLDSKQLPFVEINASFYPERP----EGEKVPPTSKL 97


>gi|87312333|ref|ZP_01094428.1| ferredoxin [Blastopirellula marina DSM 3645]
 gi|87284955|gb|EAQ76894.1| ferredoxin [Blastopirellula marina DSM 3645]
          Length = 71

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNI 80
          ++CFYEG+  L IHP+ECIDC  C PECPV+AI  + +     + ++++N+E A Q   I
Sbjct: 1  MECFYEGDKILYIHPEECIDCEACVPECPVEAIFHEDNVPEEWQGFIELNAEMAPQCEVI 60

Query: 81 TTKKESL 87
          T KKE L
Sbjct: 61 TEKKEPL 67


>gi|284043842|ref|YP_003394182.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283948063|gb|ADB50807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 89

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ ++CI  K   CVEVCPVDC         ++  + L I+P+ECIDC  C  +CPV
Sbjct: 1  MAYVINQSCIGTKDASCVEVCPVDCIHPTPNEPGFDETDQLYINPEECIDCDACFEQCPV 60

Query: 53 DAIKPD 58
          +AI PD
Sbjct: 61 NAITPD 66


>gi|119977|sp|P03941|FER_ALIAC RecName: Full=Ferredoxin
          Length = 78

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 35/53 (66%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +V+T  CI  K  DCVE CPVD  +EG +   I PD CIDC  CEP CPV+AI
Sbjct: 2  FVITSPCIGEKAADCVETCPVDAIHEGPDQYYIDPDLCIDCAACEPVCPVNAI 54


>gi|255744608|ref|ZP_05418559.1| ferredoxin [Vibrio cholera CIRS 101]
 gi|261212100|ref|ZP_05926386.1| ferredoxin [Vibrio sp. RC341]
 gi|262161260|ref|ZP_06030371.1| ferredoxin [Vibrio cholerae INDRE 91/1]
 gi|262192462|ref|ZP_06050613.1| ferredoxin [Vibrio cholerae CT 5369-93]
 gi|255737639|gb|EET93033.1| ferredoxin [Vibrio cholera CIRS 101]
 gi|260838708|gb|EEX65359.1| ferredoxin [Vibrio sp. RC341]
 gi|262029010|gb|EEY47663.1| ferredoxin [Vibrio cholerae INDRE 91/1]
 gi|262031621|gb|EEY50208.1| ferredoxin [Vibrio cholerae CT 5369-93]
          Length = 75

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C PEC   AI  + E      +++++N+E A  WPN+T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVPECTAQAIFQEDELVGDQRIFIELNAELAEHWPNLTEVKPAMEDA 60

Query: 91  AKMDGVKQKYE 101
           AK DGV  K +
Sbjct: 61  AKWDGVPNKLD 71


>gi|319949121|ref|ZP_08023214.1| putative ferredoxin reductase [Dietzia cinnamea P4]
 gi|319437231|gb|EFV92258.1| putative ferredoxin reductase [Dietzia cinnamea P4]
          Length = 551

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 12/82 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T+ C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQAC--CADASCVHACPVNCIHPTPDEPDFATAEMLYIDPVSCVDCGACVGACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSE 72
           AI P TE  P    +L+IN+E
Sbjct: 59 GAIVPHTELAPEQHDFLQINAE 80


>gi|118616138|ref|YP_904470.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
          Agy99]
 gi|118568248|gb|ABL02999.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
          Agy99]
          Length = 561

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 16/103 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVTCVDCGACVSACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSAAKM 93
           AI PD+    +   +++IN+ Y  Q        E LP  +K+
Sbjct: 59 GAIAPDSRLDSKQLPFVEINASYYPQ----RQGGEKLPPTSKL 97


>gi|183984613|ref|YP_001852904.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
 gi|183177939|gb|ACC43049.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
          Length = 561

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 16/103 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSAAKM 93
           AI PD+    +   +++IN+ Y  Q        E LP  +K+
Sbjct: 59 GAIAPDSRLDSKQLPFVEINASYYPQ----RQGGEKLPPTSKL 97


>gi|302527244|ref|ZP_07279586.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
 gi|302436139|gb|EFL07955.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
          Length = 500

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C +   +         L + P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CNDATCVSVCPVNCIHPTPDEPDFGTTEMLYVDPASCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNI 80
          DAI P       ++++  IN+++    P +
Sbjct: 59 DAIFPVDLLTDSMKVYAGINADFFADRPAV 88


>gi|54023376|ref|YP_117618.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54014884|dbj|BAD56254.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 529

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 12/86 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YVVT++C  C    CV  CPV+C +   +         L + P  C+DCG C   CPV
Sbjct: 1  MPYVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLYVDPQACVDCGACATACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQ 76
          DAI    +   E   +++IN+++  Q
Sbjct: 59 DAITSSKKLTAEQLPFIEINADFYRQ 84


>gi|296395410|ref|YP_003660294.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM
          44985]
 gi|296182557|gb|ADG99463.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM
          44985]
          Length = 556

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFLTAETLHIDPAACVDCGACVHACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEY 73
          DAI PD++   E   +L+IN+ +
Sbjct: 59 DAIAPDSKLTAEQLPFLEINASF 81


>gi|15828144|ref|NP_302407.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae TN]
 gi|221230621|ref|YP_002504037.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae
          Br4923]
 gi|17432976|sp|O33064|FPRB_MYCLE RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
          Short=FNR
 gi|2440106|emb|CAB16679.1| ferredoxin [Mycobacterium leprae]
 gi|13093698|emb|CAC31089.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae]
 gi|219933728|emb|CAR72231.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae
          Br4923]
          Length = 555

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M Y++T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPYIITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
           AI  DT   P    +++IN+ Y    P
Sbjct: 59 GAIASDTRLAPKQLPFIEINASYYPARP 86


>gi|117164510|emb|CAJ88056.1| putative ferredoxin reductase [Streptomyces ambofaciens ATCC
          23877]
          Length = 510

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CSDATCVSVCPVNCIRPTPEEQAFGSTEMLHIDPKTCIDCGACADACPV 58

Query: 53 DAIKP 57
          DAI P
Sbjct: 59 DAIFP 63


>gi|23336655|ref|ZP_00121861.1| COG1146: Ferredoxin [Bifidobacterium longum DJO10A]
          Length = 97

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 31/43 (72%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI
Sbjct: 4  KDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAI 46


>gi|126641295|ref|YP_001084279.1| 7-Fe ferredoxin [Acinetobacter baumannii ATCC 17978]
 gi|213156378|ref|YP_002318798.1| ferredoxin-1 [Acinetobacter baumannii AB0057]
 gi|215483972|ref|YP_002326197.1| Ferredoxin 1 [Acinetobacter baumannii AB307-0294]
 gi|213055538|gb|ACJ40440.1| ferredoxin-1 [Acinetobacter baumannii AB0057]
 gi|213987413|gb|ACJ57712.1| Ferredoxin 1 [Acinetobacter baumannii AB307-0294]
 gi|322507872|gb|ADX03326.1| fdxA [Acinetobacter baumannii 1656-2]
 gi|323517469|gb|ADX91850.1| ferredoxin [Acinetobacter baumannii TCDC-AB0715]
          Length = 74

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+PDECIDC +CEPECP +AI  + E   G E+++++N+E + +WPNIT   E      +
Sbjct: 2   INPDECIDCALCEPECPANAIFSEDELPEGQEVFIELNAELSQKWPNITQIGEQPADREE 61

Query: 93  MDGVKQKYE 101
            +G   K +
Sbjct: 62  WNGKPDKLQ 70


>gi|229008434|ref|ZP_04165889.1| Ferredoxin [Bacillus mycoides Rock1-4]
 gi|228752827|gb|EEM02400.1| Ferredoxin [Bacillus mycoides Rock1-4]
          Length = 78

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+T  CI  K  DCV+VCPV+C   G +   I+P  CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITSPCISEKAADCVDVCPVNCIELGSDQYFINPALCIDCGACETACPVEAIYYEDE 60


>gi|297170989|gb|ADI22004.1| ferredoxin [uncultured myxobacterium HF0200_01L06]
          Length = 117

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 8/68 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--YEGE------NFLAIHPDECIDCGVCEPECPV 52
          MT+V+T  C       CVEVCPVDC   Y G+      N L I P+ECI+CGVCEPECP 
Sbjct: 1  MTWVITSLCRDKVDMSCVEVCPVDCIVQYTGDDTDKFPNQLYIDPEECINCGVCEPECPW 60

Query: 53 DAIKPDTE 60
          +AI  D +
Sbjct: 61 EAIFEDEQ 68


>gi|23100035|ref|NP_693501.1| ferredoxin [Oceanobacillus iheyensis HTE831]
 gi|22778266|dbj|BAC14536.1| ferredoxin [Oceanobacillus iheyensis HTE831]
          Length = 79

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ + C   K  +CV VCPVDC  EG     I PD CIDCG C+  CPV AI+   D
Sbjct: 1  MAFVILDPCRGEKAGECVSVCPVDCIEEGVKQFYIDPDICIDCGACKAVCPVSAIEEEYD 60

Query: 59 TEPGLELWLKINSEY 73
            P  E +L+   E+
Sbjct: 61 LTPNQEKYLEEAEEF 75


>gi|116620169|ref|YP_822325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Solibacter usitatus Ellin6076]
 gi|116223331|gb|ABJ82040.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 86

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC         Y     L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDEPAYADAELLYIDPVECIDCGACVPVCPV 60

Query: 53 DAI 55
           AI
Sbjct: 61 SAI 63


>gi|284033073|ref|YP_003383004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Kribbella flavida DSM 17836]
 gi|283812366|gb|ADB34205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
          flavida DSM 17836]
          Length = 499

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--GE------NFLAIHPDECIDCGVCEPECPV 52
          MTYV+  +C  C    CV  CP++C +   GE      + L I P  CIDCG C   CPV
Sbjct: 1  MTYVIAGDC--CADARCVSACPMNCIHPSPGEPGFGTTDGLFIDPRTCIDCGACAEVCPV 58

Query: 53 DAIKPDTEPGLELWLKINSEYATQWPNI 80
          DA +P  +    + + +N+ Y  + P +
Sbjct: 59 DAAQP-ADKAAPIDVALNAAYFAERPAV 85


>gi|226304299|ref|YP_002764257.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183414|dbj|BAH31518.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 574

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV VCP +C         Y     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDAACVVVCPANCIHPTPDEPDYARTEILYIDPRSCVDCGACIQACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEY 73
          DAI P  E  P    + ++N+ Y
Sbjct: 59 DAIVPHDELTPQTIRYAELNALY 81


>gi|111024041|ref|YP_707013.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110823571|gb|ABG98855.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 467

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MT+VV  +C  CK   CV VCP +C         +E    L I P  CIDC  C   CP 
Sbjct: 1  MTHVVLGHC--CKDASCVRVCPQNCIHPAPGEAGFESAETLFIDPRSCIDCTACVEACPA 58

Query: 53 DAIKPDTEPGL--ELWLKINSEYATQWP 78
           AIKP+    +    +   N+EY  Q P
Sbjct: 59 SAIKPEWTLTITERPYAARNAEYFEQTP 86


>gi|324997613|ref|ZP_08118725.1| ferredoxin--NADP+ reductase [Pseudonocardia sp. P1]
          Length = 498

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV  CPV+C         Y   + L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CTDASCVAACPVNCIHPTPDEPDYTTTDMLYIDPRACIDCGACADACPV 58

Query: 53 DAIKP 57
          DA+ P
Sbjct: 59 DAVFP 63


>gi|325121599|gb|ADY81122.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus PHEA-2]
          Length = 74

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 38/50 (76%), Gaps = 2/50 (4%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITT 82
          I+PDECIDC +CEPECP +AI  + E   G E+++++N+E + +WPNIT 
Sbjct: 2  INPDECIDCALCEPECPANAIFSEDELPEGQEVFIELNAELSQKWPNITQ 51


>gi|94969826|ref|YP_591874.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
          versatilis Ellin345]
 gi|94551876|gb|ABF41800.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
          Koribacter versatilis Ellin345]
          Length = 86

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +          E  L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDAEAHANEPMLYIDPVECIDCGACVPVCPV 60

Query: 53 DAI 55
           AI
Sbjct: 61 SAI 63


>gi|320335406|ref|YP_004172117.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
 gi|319756695|gb|ADV68452.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
          Length = 78

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDT 59
          M YV+T+ C   +   C EVCP DC ++      I P+ECIDCG C   CPV AI   D 
Sbjct: 1  MAYVITDRCAGVRDGACREVCPKDCIHDAGAQFVIDPEECIDCGACVVACPVGAIAHEDD 60

Query: 60 EPGLE-LWLKINSEY 73
            G E ++ ++N  +
Sbjct: 61 LVGAEGVFAQVNRAF 75


>gi|145222311|ref|YP_001132989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium gilvum PYR-GCK]
 gi|145214797|gb|ABP44201.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium gilvum PYR-GCK]
          Length = 557

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 10/68 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE 60
           AI PD++
Sbjct: 59 GAIAPDSK 66


>gi|315442745|ref|YP_004075624.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
          [Mycobacterium sp. Spyr1]
 gi|315261048|gb|ADT97789.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
          [Mycobacterium sp. Spyr1]
          Length = 557

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 10/68 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE 60
           AI PD++
Sbjct: 59 GAIAPDSK 66


>gi|41406923|ref|NP_959759.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395273|gb|AAS03142.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 16/103 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSAAKM 93
           AI PD     +   +++IN+ +  + P      + LP  +K+
Sbjct: 59 GAIAPDNRLDDKQLPFVEINASFYPKRP----AGQKLPPTSKL 97


>gi|284042634|ref|YP_003392974.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283946855|gb|ADB49599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 86

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 38/66 (57%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTYV+ E CI  K   C EVCPVDC +  ++         L I P+ECIDC  C   CPV
Sbjct: 1  MTYVIAEPCIGEKDHSCTEVCPVDCIHPTQDEPGFAEATMLYIDPEECIDCDACVEACPV 60

Query: 53 DAIKPD 58
          DAI P+
Sbjct: 61 DAIFPE 66


>gi|299139029|ref|ZP_07032206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidobacterium sp. MP5ACTX8]
 gi|298599183|gb|EFI55344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidobacterium sp. MP5ACTX8]
          Length = 86

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 45/86 (52%), Gaps = 11/86 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-------EGE-NFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +        GE   L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDETGHGEAEQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAI-KPDTEPGLELWLKINSEYATQW 77
           AI   D  P  + W+    + AT +
Sbjct: 61 SAIYAGDDLP--DKWVSFQEKNATHF 84


>gi|322436219|ref|YP_004218431.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321163946|gb|ADW69651.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 86

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K + CV+ CPVDC         Y     L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDSACVDACPVDCIHPKKDENGYSDATQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAI 55
           AI
Sbjct: 61 SAI 63


>gi|225872601|ref|YP_002754056.1| iron-sulfur cluster-binding protein [Acidobacterium capsulatum
          ATCC 51196]
 gi|225791610|gb|ACO31700.1| iron-sulfur cluster-binding protein [Acidobacterium capsulatum
          ATCC 51196]
          Length = 86

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC         Y     L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDEGTYGDAEQLYIDPVECIDCGACVPVCPV 60

Query: 53 DAI 55
           AI
Sbjct: 61 SAI 63


>gi|289756971|ref|ZP_06516349.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T85]
 gi|289712535|gb|EFD76547.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T85]
          Length = 179

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWP 78
           AI P+T    E   +++IN+ Y  + P
Sbjct: 59 SAIAPNTRLDFEQLPFVEINASYYPKRP 86


>gi|120405980|ref|YP_955809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958798|gb|ABM15803.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 559

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 20/123 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVYACPVNCIHPTPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            AI P+T   P    ++++N+ +   +P    +   LP  +K+  V +  E      PGG
Sbjct: 59  GAIAPETGLAPDQLPFVELNAAF---YPK---RDGKLPPTSKLAPVLEAPE--VRRRPGG 110

Query: 111 KNT 113
             T
Sbjct: 111 PLT 113


>gi|284047254|ref|YP_003397594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283951475|gb|ADB54219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 87

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K   CVEVCPVDC         Y+    L I P+ECIDC  C   CPV
Sbjct: 1  MAYVIAEPCIGAKDNSCVEVCPVDCIHPTPDEPDYDRVEMLYIDPEECIDCDACVEACPV 60

Query: 53 DA 54
          DA
Sbjct: 61 DA 62


>gi|320106410|ref|YP_004182000.1| iron-sulfur cluster-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319924931|gb|ADV82006.1| iron-sulfur cluster-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 86

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--EGENF------LAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T C + CPVDC +  +GE+       L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACADACPVDCIHPKKGEDGNEEAVQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAI 55
           AI
Sbjct: 61 SAI 63


>gi|311742320|ref|ZP_07716129.1| ferredoxin--NADP(+) reductase C-terminal domain protein
          [Aeromicrobium marinum DSM 15272]
 gi|311313948|gb|EFQ83856.1| ferredoxin--NADP(+) reductase C-terminal domain protein
          [Aeromicrobium marinum DSM 15272]
          Length = 559

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT +C  C    C   CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTRSC--CADASCTFACPVNCIHPTPDEPDFGTAEMLYIDPVSCVDCGACVRACPV 58

Query: 53 DAIKPDTEPG-LEL-WLKINSEY 73
           AI P T+ G  EL +L+IN+ +
Sbjct: 59 GAIVPHTKLGEHELPFLEINAAF 81


>gi|261407735|ref|YP_003243976.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Paenibacillus sp. Y412MC10]
 gi|261284198|gb|ACX66169.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. Y412MC10]
          Length = 78

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 33/54 (61%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI
Sbjct: 1  MYVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAI 54


>gi|329925765|ref|ZP_08280551.1| ferredoxin [Paenibacillus sp. HGF5]
 gi|328939645|gb|EGG35990.1| ferredoxin [Paenibacillus sp. HGF5]
          Length = 78

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 33/54 (61%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI
Sbjct: 1  MYVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAI 54


>gi|315647852|ref|ZP_07900953.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus vortex V453]
 gi|315276498|gb|EFU39841.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus vortex V453]
          Length = 78

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 33/54 (61%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI
Sbjct: 1  MYVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAI 54


>gi|312138771|ref|YP_004006107.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311888110|emb|CBH47422.1| putative ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 470

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLA------IHPDECIDCGVCEPECPV 52
          M +V+  +C  CK   CV VCP +C +   GE+  A      I PD CIDC  C   CP 
Sbjct: 1  MAHVILGHC--CKDASCVRVCPQNCIHPAPGEDGFASTETLYIDPDSCIDCTACVDACPA 58

Query: 53 DAIKPD--TEPGLELWLKINSEYATQWPNITTKKESL 87
           A+K +    P    +   N E+  Q P  T  +  L
Sbjct: 59 SAVKSEHALTPAELPYAARNREFFAQAPAATRTRSRL 95


>gi|325676533|ref|ZP_08156211.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|325552711|gb|EGD22395.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 470

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLA------IHPDECIDCGVCEPECPV 52
          M +V+  +C  CK   CV VCP +C +   GE+  A      I PD CIDC  C   CP 
Sbjct: 1  MAHVILGHC--CKDASCVRVCPQNCIHPAPGEDGFASTETLYIDPDSCIDCTACVDACPA 58

Query: 53 DAIKPD--TEPGLELWLKINSEYATQWPNITTKKESL 87
           A+K +    P    +   N E+  Q P  T  +  L
Sbjct: 59 SAVKSEHALTPAELPYAARNREFFAQAPAATRTRSRL 95


>gi|108801425|ref|YP_641622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119870578|ref|YP_940530.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. KMS]
 gi|108771844|gb|ABG10566.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119696667|gb|ABL93740.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. KMS]
          Length = 561

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFATAEMLYIDPAACVDCGACVSACPV 58

Query: 53 DAIKPD 58
           AI P+
Sbjct: 59 GAIAPE 64


>gi|126437410|ref|YP_001073101.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|126237210|gb|ABO00611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 561

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C         +     L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFATAEMLYIDPAACVDCGACVSACPV 58

Query: 53 DAIKPD 58
           AI P+
Sbjct: 59 GAIAPE 64


>gi|218780897|ref|YP_002432215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762281|gb|ACL04747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 3   YVVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YVV    E CI C    CVE CP+D F EGE+ +++ P  CI CG+C   CP +A+  + 
Sbjct: 272 YVVQFNEEECINC--GTCVERCPMDAFTEGEDVISVDPGRCIGCGLCTTTCPTEALSLEI 329

Query: 60  EP 61
           +P
Sbjct: 330 QP 331


>gi|126650009|ref|ZP_01722242.1| ferredoxin [3Fe-4S](4Fe-4S) [Bacillus sp. B14905]
 gi|126593181|gb|EAZ87143.1| ferredoxin [3Fe-4S](4Fe-4S) [Bacillus sp. B14905]
          Length = 78

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+TE C   K   C++VCPV+C    +    I+PD CIDCG CE  CPV+AI
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVNTDTQYVINPDICIDCGACELVCPVEAI 55


>gi|326384264|ref|ZP_08205946.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197129|gb|EGD54321.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 546

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 10/64 (15%)

Query: 20 VCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKI 69
          VCPV+C +   +         L I P+ CIDCG C  ECPV AI PD +     E +L+I
Sbjct: 3  VCPVNCIHPTPDEPDFLTAEMLYIDPETCIDCGACIDECPVSAIYPDDQLPEKEEPFLQI 62

Query: 70 NSEY 73
          N++Y
Sbjct: 63 NADY 66


>gi|312143185|ref|YP_003994631.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium sp. 'sapolanicus']
 gi|311903836|gb|ADQ14277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium sp. 'sapolanicus']
          Length = 56

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+ ++CILC    C   CPVDC  EG+    I  DECIDC  C   CPVDAI 
Sbjct: 1  MAHVINDDCILCGA--CAPECPVDCISEGDTKYEIDADECIDCAACVSVCPVDAIS 54


>gi|169827413|ref|YP_001697571.1| ferredoxin [Lysinibacillus sphaericus C3-41]
 gi|168991901|gb|ACA39441.1| Ferredoxin 7Fe (Seven-iron ferredoxin) [Lysinibacillus sphaericus
          C3-41]
          Length = 78

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+TE C   K   C++VCPV+C    +    I+PD CIDCG CE  CPV+AI
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVNTDTQYVINPDICIDCGACELVCPVEAI 55


>gi|326791937|ref|YP_004309758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium lentocellum DSM 5427]
 gi|326542701|gb|ADZ84560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium lentocellum DSM 5427]
          Length = 57

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y++ E+CI C    C   CPV C  EG++   I+ DECI+CG C   CPV A  P+ 
Sbjct: 1  MAYIINEDCISCGA--CAAECPVSCISEGDSIYVINADECIECGACAGVCPVGAPNPEA 57


>gi|296140639|ref|YP_003647882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
 gi|296028773|gb|ADG79543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
          Length = 510

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    C   CPV+C         +     L + P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDAACTFACPVNCIHPTPDEPGFATAEMLYVDPTTCVDCGACVTACPV 58

Query: 53 DAIKPDTEPGLE--LWLKINSEYATQWP 78
          DAI P      E  ++++IN   A   P
Sbjct: 59 DAIGPAHRLPEEHKVYIEINRSLAAADP 86


>gi|20807413|ref|NP_622584.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
 gi|20515935|gb|AAM24188.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
          Length = 74

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + + +TE CI C    C   CPVD  YEG+    I P++CIDCG CE  CP  AIK +
Sbjct: 19 VAHYITEECISCGA--CAAECPVDAIYEGDGKYEIDPEKCIDCGACEAVCPTGAIKAE 74



 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + EG N      +ECI CG C  ECPVDAI
Sbjct: 13 YKEGRNVAHYITEECISCGACAAECPVDAI 42


>gi|158318907|ref|YP_001511415.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Frankia sp. EAN1pec]
 gi|158114312|gb|ABW16509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EAN1pec]
          Length = 112

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 1  MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+T  CI  K   C+   CP DC YEG   + I+PDEC +CG C   CPV A   D
Sbjct: 1  MPFVITSACIDVKDGACLGGGCPADCIYEGNRKMYINPDECTECGACAVACPVGAAMID 59


>gi|323704227|ref|ZP_08115806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536293|gb|EGB26065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 56

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPVD  +EG     +  D CIDCG CEP CP  AIK +
Sbjct: 1  MAHIITDECISCGA--CAAECPVDAIHEGTGKYEVDADTCIDCGACEPVCPTGAIKAE 56


>gi|320161502|ref|YP_004174726.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319995355|dbj|BAJ64126.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 136

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAI 55
          MT+V+T  C+  +   C  VCPV+C   G+      +  I PD CIDCG C PECP +AI
Sbjct: 1  MTHVITSLCL--RDGGCATVCPVECIVPGQPVDEWPWYYIDPDTCIDCGACVPECPWEAI 58

Query: 56 KPDTE 60
           P+ E
Sbjct: 59 FPEDE 63


>gi|299536448|ref|ZP_07049760.1| ferredoxin 7Fe [Lysinibacillus fusiformis ZC1]
 gi|298727932|gb|EFI68495.1| ferredoxin 7Fe [Lysinibacillus fusiformis ZC1]
          Length = 78

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+TE C   K   C++VCPV+C    +    I PD CIDCG CE  CPV+AI
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVMTDTQYVIDPDLCIDCGACELVCPVEAI 55


>gi|307266903|ref|ZP_07548422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326389885|ref|ZP_08211449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
 gi|306918060|gb|EFN48315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325994153|gb|EGD52581.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
          Length = 56

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  AIK +
Sbjct: 1  MAHYITDECISCGA--CAAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAIKAE 56


>gi|229488683|ref|ZP_04382549.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
 gi|229324187|gb|EEN89942.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
          Length = 543

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)

Query: 20 VCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE--LWLKI 69
          +CPV+C         +     L I PD CIDCG C  ECPV+AI PD E   +   +L++
Sbjct: 1  MCPVNCIHPTPDEAPFATTEMLYIDPDTCIDCGACVDECPVEAIFPDNELDEDDAPYLQM 60

Query: 70 NSEYATQWP 78
          N+ Y  + P
Sbjct: 61 NASYFEKHP 69


>gi|167037823|ref|YP_001665401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040723|ref|YP_001663708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter sp. X514]
 gi|256752156|ref|ZP_05493022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914762|ref|ZP_07132078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X561]
 gi|307724004|ref|YP_003903755.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|320116240|ref|YP_004186399.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854963|gb|ABY93372.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X514]
 gi|166856657|gb|ABY95065.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748970|gb|EEU62008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889697|gb|EFK84843.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X561]
 gi|307581065|gb|ADN54464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|319929331|gb|ADV80016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 56

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  AIK +
Sbjct: 1  MAHYITDECISCGA--CTAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAIKAE 56


>gi|85859636|ref|YP_461838.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722727|gb|ABC77670.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 59

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T++C+ C    C +VCP     EGE+   I P  C DCG C  +CP +AI P  E
Sbjct: 1  MAYVITDDCVACGS--CQDVCPAGAISEGEDKYVIDPAVCTDCGTCAEQCPAEAIVPGEE 58


>gi|288919073|ref|ZP_06413413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
 gi|288349513|gb|EFC83750.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
          Length = 113

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 1  MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+T  CI  K   C++  CP DC Y G   + I+PDEC +CG C   CPV A   D
Sbjct: 1  MPFVITSACIDVKDGACLDGGCPADCIYTGGRKMYINPDECTECGACALRCPVGAAMLD 59


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++ E  CI C  + C +VCPVD    E +N   I PD CI CG CEPECPVDAI
Sbjct: 546 YIIDEEACIGC--SKCSKVCPVDAISGEIKNPFKIDPDVCIACGACEPECPVDAI 598


>gi|289578084|ref|YP_003476711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|297544357|ref|YP_003676659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527797|gb|ADD02149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|296842132|gb|ADH60648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 56

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  A+K +
Sbjct: 1  MAHYITDECISCGA--CAAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAVKAE 56


>gi|258649091|ref|ZP_05736560.1| conserved domain protein [Prevotella tannerae ATCC 51259]
 gi|260850732|gb|EEX70601.1| conserved domain protein [Prevotella tannerae ATCC 51259]
          Length = 56

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++C+ C    C+  CP +   EGE + +I+PD C+DCG C   CP  AI P
Sbjct: 1  MAYVISDDCVACGT--CIGECPTESISEGEKY-SINPDSCVDCGACADACPTGAIAP 54


>gi|309388856|gb|ADO76736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium praevalens DSM 2228]
          Length = 56

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V++++CILC    C   CPV+C  EG+    I  D+CIDC  C   CPVDAI 
Sbjct: 1  MAHVISDDCILCGA--CAPECPVECISEGDTQYEIAADDCIDCAACVSVCPVDAIS 54


>gi|260772955|ref|ZP_05881871.1| ferredoxin [Vibrio metschnikovii CIP 69.14]
 gi|260612094|gb|EEX37297.1| ferredoxin [Vibrio metschnikovii CIP 69.14]
          Length = 75

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C PEC   AI  + E     +L++++N+E A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVPECDAQAIFQEDELPDDQKLFIELNAELAEIWPTQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  GKWNGVPNKL 70


>gi|332285866|ref|YP_004417777.1| ferredoxin [Pusillimonas sp. T7-7]
 gi|330429819|gb|AEC21153.1| ferredoxin [Pusillimonas sp. T7-7]
          Length = 86

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 27  YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEYATQ--WPNITT 82
            EG NFL I+PDECIDC +C  ECP+ AI  D E   E   ++ +N + +    W  I+ 
Sbjct: 1   MEGPNFLVINPDECIDCSICVAECPLGAIVSDHEVADEQRHFIDLNRQLSQHPAWKRISR 60

Query: 83  KKESLPSAAKMDGVKQKY 100
            K  L        VK K 
Sbjct: 61  AKAPLSDHEHWATVKDKL 78


>gi|149925530|ref|ZP_01913794.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149825647|gb|EDM84855.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 80

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAI-KPDTEPG-LELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+P+ CIDCGVC PECP  AI + D  P   + +++IN+  A QWP I + KE L  A  
Sbjct: 2   INPEGCIDCGVCIPECPASAIFEEDNVPADQQEFIEINARLAQQWPVIDSAKEPLADADA 61

Query: 93  MDGVKQKYE 101
              V  K +
Sbjct: 62  WVDVTNKKQ 70


>gi|220932451|ref|YP_002509359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
 gi|219993761|gb|ACL70364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
          Length = 57

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+++ CI+C    C   CPVD   +G+N   I PD CIDCG C   CPV+AI 
Sbjct: 1  MAHVISDECIMCGA--CEPECPVDAISQGDNKYEIDPDTCIDCGACAEVCPVEAIS 54


>gi|310827887|ref|YP_003960244.1| hypothetical protein ELI_2298 [Eubacterium limosum KIST612]
 gi|308739621|gb|ADO37281.1| conserved domain protein [Eubacterium limosum KIST612]
          Length = 56

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y+++  CI C    CV  CPV+   +G++   I+ DEC+DCGVCE  CP  AI
Sbjct: 1  MAYIISGECIACGG--CVTECPVEAISKGDDRYIINADECVDCGVCEETCPTGAI 53


>gi|298251068|ref|ZP_06974872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297549072|gb|EFH82939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 86

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+  I  K   CVEVC VDC         +E    L+I+PDECI+CG  E  CPV
Sbjct: 1  MPYVITQLYIGSKDACCVEVCLVDCIHPTPDEEEFETTEHLSINPDECIECGAUEAACPV 60

Query: 53 DAI--KPDTEPGLELWLKINSEY 73
           AI  +P        ++ IN+ +
Sbjct: 61 TAIFEEPLVPQEWRQYIAINANF 83


>gi|319779236|ref|YP_004130149.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
 gi|317109260|gb|ADU92006.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
          Length = 201

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y++ E+CI C  T C++VCPVD       ++  + PD C  C +C   CPVD I+    
Sbjct: 82  AYILEEHCIGC--TKCIQVCPVDSIIGANKWMHTVIPDFCTGCELCVLACPVDCIQ--MN 137

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L LW + ++  A    +   K+       + D +    E  FS
Sbjct: 138 PSLALWTEDDAAIARTRFHARNKRLEDDKILEQDRLNSLSENQFS 182


>gi|225175870|ref|ZP_03729863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168794|gb|EEG77595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 57

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MT+V+ E CI C    C   CPVD   EG++   I P+ CIDCG C   CPVDAI  ++
Sbjct: 1  MTHVINEECISCGS--CEPECPVDAITEGDDKYVIDPETCIDCGACAEVCPVDAIHEES 57


>gi|326383750|ref|ZP_08205435.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197514|gb|EGD54703.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 506

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL--ELWLKINSEY 73
          +C+   P +  +   + L I P+ CIDCG C   CPVDAI P        +++++IN+ Y
Sbjct: 2  NCIHPTPEERGFGTSDILHIDPEACIDCGACADACPVDAIFPADRLSARDQIFVEINAGY 61

Query: 74 ATQWPNITT 82
              P+I++
Sbjct: 62 YRDHPDISS 70


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TYV+T E+CI C    C +VCPVD    E +    I  D CI CG CEP CPVDAI
Sbjct: 544 TYVITTEDCIGCGK--CAKVCPVDAISGEIKGIFEIDEDICIACGACEPVCPVDAI 597


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 37/56 (66%), Gaps = 6/56 (10%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           YV+ E +CI C  T CV+VCPVD   EGE   A  I  DECI+CG C  ECPVDAI
Sbjct: 545 YVIDEEDCIGC--TSCVDVCPVDAI-EGEKKEAHVIDTDECINCGSCVDECPVDAI 597


>gi|312141555|ref|YP_004008891.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325677227|ref|ZP_08156893.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|311890894|emb|CBH50213.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325551924|gb|EGD21620.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 546

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 18 VEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWL 67
          ++VCPV+C         +     L I P  CIDCG C  ECPVDAI  + E      ++ 
Sbjct: 1  MDVCPVNCIHPTPDEPEFATTEMLYIDPQTCIDCGACVDECPVDAIFGENELSEAHSMYP 60

Query: 68 KINSEY------ATQWPNITTKKE 85
          +IN+ Y         WP + + ++
Sbjct: 61 EINAAYFEKHPIGPDWPELASPRK 84


>gi|29347824|ref|NP_811327.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339726|gb|AAO77521.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
          Length = 76

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV+   EG+ + +I+PD C DCG C   CP +AI P
Sbjct: 21 MAYVISDDCIACGT--CIDECPVEAISEGDIY-SINPDVCTDCGTCADVCPSEAIHP 74


>gi|167770016|ref|ZP_02442069.1| hypothetical protein ANACOL_01358 [Anaerotruncus colihominis DSM
          17241]
 gi|167667850|gb|EDS11980.1| hypothetical protein ANACOL_01358 [Anaerotruncus colihominis DSM
          17241]
          Length = 70

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ + C+ C    C + CPV    EG+    I P  CI+CG C  +CP +AIKP+
Sbjct: 15 MAYVIGDACVSCGA--CKDTCPVGAISEGDGKYEIDPSACIECGACAADCPSEAIKPE 70


>gi|297619793|ref|YP_003707898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378770|gb|ADI36925.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 395

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 53/112 (47%), Gaps = 22/112 (19%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI----- 55
           ++ VTE CI C+   CVEVCP D   Y  E+ +   P+ C  C +CE  CPVDAI     
Sbjct: 192 SFTVTEECIGCEK--CVEVCPGDMITYNAEDLIVKLPEACPACHLCEQNCPVDAISLEVE 249

Query: 56  ----KPDTEPGLELWLKINSEY----ATQWPN-----ITTKKESLPSAAKMD 94
               KP TE GL +W +    Y    A + P      +  K   LPS  K D
Sbjct: 250 YGSAKPVTEEGL-VWYEDKCNYCGPCAIKCPTNAINLVNQKGLELPSRTKTD 300



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+ C+ C  ++CV VCPVD          I  D+CI C VC   CP +AI
Sbjct: 128 VTDACVGC--SECVPVCPVDAISIENELAVIDTDKCIYCTVCAQTCPWNAI 176


>gi|164687083|ref|ZP_02211111.1| hypothetical protein CLOBAR_00709 [Clostridium bartlettii DSM
          16795]
 gi|164603968|gb|EDQ97433.1| hypothetical protein CLOBAR_00709 [Clostridium bartlettii DSM
          16795]
          Length = 67

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ CI C    C + CP D    G++  +I+ DEC+DCG C   CP DAI
Sbjct: 12 MAYKITDECIACGS--CADECPNDAITAGDDKYSINADECLDCGSCADACPNDAI 64


>gi|332883619|gb|EGK03900.1| hypothetical protein HMPREF9456_01441 [Dysgonomonas mossii DSM
          22836]
          Length = 55

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG+ +  I PD C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIACGT--CIDECPVNAISEGDIY-KIDPDACTDCGTCADACPTEAIHP 54


>gi|302669638|ref|YP_003829598.1| ferredoxin [Butyrivibrio proteoclasticus B316]
 gi|302394111|gb|ADL33016.1| ferredoxin [Butyrivibrio proteoclasticus B316]
          Length = 56

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ CI C    C   CPV    +G+    I  + CIDCG C  +CPV AI 
Sbjct: 1  MAYVISDGCISCGS--CAAQCPVSAISQGDTQYVIDANTCIDCGSCAAQCPVSAIS 54


>gi|162453825|ref|YP_001616192.1| ferredoxin/ferredoxin--NADP reductase [Sorangium cellulosum 'So
          ce 56']
 gi|161164407|emb|CAN95712.1| Probable ferredoxin/ferredoxin--NADP reductase [Sorangium
          cellulosum 'So ce 56']
          Length = 107

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 45/94 (47%), Gaps = 21/94 (22%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------------EGEN-------FLAIHPDECI 41
          M YV+ E C+    T CV VCPVDC +            EGE         L I P+ CI
Sbjct: 1  MAYVIAEPCVATCDTACVPVCPVDCIHGPLAADEISRIPEGERKTRLAGLQLYIDPESCI 60

Query: 42 DCGVCEPECPVDAIKPDTEPGLE--LWLKINSEY 73
           CG CE ECPV AI  + E   E   + +IN+ +
Sbjct: 61 CCGACENECPVGAIFDEDELPAEWQRYREINARF 94


>gi|291533213|emb|CBL06326.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Megamonas hypermegale ART12/1]
          Length = 55

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV    EGEN   I  D C++CG C+  CP  AI+ 
Sbjct: 1  MAYKITDDCISCGA--CAGTCPVGAISEGENHYEIDADMCVECGACQAGCPAGAIEA 55


>gi|332829008|gb|EGK01676.1| hypothetical protein HMPREF9455_02031 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 55

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG+ +  I PD C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIACGT--CIDECPVNAISEGDIY-KIDPDTCTDCGTCADACPTEAIHP 54


>gi|282883119|ref|ZP_06291718.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281296931|gb|EFA89428.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 505

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y VT NC  C    C+ VCPV+    G++   I  D+CI CG C   CP +AI
Sbjct: 112 SYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKDKCIRCGRCHEACPYNAI 165


>gi|227873643|ref|ZP_03991880.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Oribacterium sinus F0268]
 gi|227840514|gb|EEJ50907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Oribacterium sinus F0268]
          Length = 56

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +VV++ C+ C    C  VCPV+   EG     + PD CIDCG CE  CP  AI 
Sbjct: 1  MAHVVSDECVSCGA--CAAVCPVEAISEGPTKYVVDPDTCIDCGACEEPCPTGAIA 54


>gi|169628027|ref|YP_001701676.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          abscessus ATCC 19977]
 gi|169239994|emb|CAM61022.1| Putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          abscessus]
          Length = 539

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEY 73
          +C+   P +  +     L I    C+DCG C   CPVDAIKPD+    E   +L+INSE+
Sbjct: 2  NCIHPTPDEPDFLKAEMLHIDASACVDCGACVAACPVDAIKPDSTLKEEQLPFLRINSEF 61


>gi|218135337|ref|ZP_03464141.1| hypothetical protein BACPEC_03242 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990722|gb|EEC56733.1| hypothetical protein BACPEC_03242 [Bacteroides pectinophilus ATCC
          43243]
          Length = 56

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M ++++++C+ C    CV  CPV+   EG+  + I  D CIDCG CE  CPV A
Sbjct: 1  MAHIISDDCVSCGA--CVAECPVNAISEGDGKMVIDADTCIDCGACEGVCPVGA 52


>gi|255014270|ref|ZP_05286396.1| ferredoxin [Bacteroides sp. 2_1_7]
 gi|256841512|ref|ZP_05547019.1| ferredoxin [Parabacteroides sp. D13]
 gi|262383318|ref|ZP_06076454.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|298376261|ref|ZP_06986217.1| hypothetical protein HMPREF0104_02443 [Bacteroides sp. 3_1_19]
 gi|301309369|ref|ZP_07215311.1| conserved domain protein [Bacteroides sp. 20_3]
 gi|256737355|gb|EEU50682.1| ferredoxin [Parabacteroides sp. D13]
 gi|262294216|gb|EEY82148.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|298267298|gb|EFI08955.1| hypothetical protein HMPREF0104_02443 [Bacteroides sp. 3_1_19]
 gi|300832458|gb|EFK63086.1| conserved domain protein [Bacteroides sp. 20_3]
          Length = 56

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+ + +I+P+ C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACGT--CIDECPVGAISEGDKY-SINPEMCTDCGTCADACPTEAIHP 54


>gi|79558|pir||S15879 electron transfer protein - Rhodopseudomonas rutila  (fragment)
          Length = 26

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 24/26 (92%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY 27
          TYVVTENCI CK+TDCVEVC VDCFY
Sbjct: 1  TYVVTENCIKCKYTDCVEVCXVDCFY 26


>gi|302387727|ref|YP_003823549.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
 gi|302198355|gb|ADL05926.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
          Length = 483

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 30/59 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC LC    C   C  +    G +   I PD+C +CG C   CP +AI   T P
Sbjct: 94  YVVTDNCQLCMGKACQSSCNFNAISMGRDRAYIDPDKCKECGKCSQACPYNAIADLTRP 152


>gi|255282942|ref|ZP_05347497.1| conserved domain protein [Bryantella formatexigens DSM 14469]
 gi|255266481|gb|EET59686.1| conserved domain protein [Bryantella formatexigens DSM 14469]
          Length = 56

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C + CP     EG+    I  D C++CG CE ECP  AI  +
Sbjct: 1  MAYVISDECVSCGT--CADACPAGAISEGDGKYVIDADACLECGTCESECPTGAISAE 56


>gi|146295776|ref|YP_001179547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409352|gb|ABP66356.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 57

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   GE    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCGA--CESECPVQCISPGEGKYVINEEECISCGACANVCPVDAPKP 55


>gi|306820054|ref|ZP_07453702.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551832|gb|EFM39775.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 503

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY VT NC  C    C++VCPV+    G+    I  ++CI CG C+  CP +AI
Sbjct: 114 TYRVTNNCRKCLAHPCIQVCPVNAISMGQYSTIIDEEKCIRCGRCKDNCPYNAI 167


>gi|302392756|ref|YP_003828576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
 gi|302204833|gb|ADL13511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
          Length = 55

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y + + C+ C    CVE CPVD   EG++   I  DEC++CG C   CPV+AI+
Sbjct: 1  MAYTINDECVDCGT--CVEECPVDAIIEGDDHFEIDEDECVECGNCLDACPVEAIE 54


>gi|41018387|sp|Q00388|VHUB_METVO RecName: Full=Polyferredoxin protein vhuB
 gi|1747410|emb|CAA43512.1| polyferredoxin [Methanococcus voltae PS]
          Length = 398

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 54/115 (46%), Gaps = 25/115 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI----- 55
           ++ VTE CI C+   CVEVCP D   Y  E+ +   P+ C  C +CE  CPVDAI     
Sbjct: 192 SFTVTEECIGCEK--CVEVCPGDMITYNREDLIVKLPEACPACHLCEQNCPVDAISLEVE 249

Query: 56  ----KPDTEPGLELWLKINSEY----ATQWP--------NITTKKESLPSAAKMD 94
               KP TE GL +W +    Y    A + P         I  K  +LPS  K D
Sbjct: 250 YGSAKPVTEEGL-VWYEDKCNYCGPCAIKCPLCPTNAINMINQKGLALPSRTKTD 303



 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VTE C+ C  ++CV VCPVD     +    I  ++CI C VC   CP +AI
Sbjct: 128 VTEACVGC--SECVPVCPVDAISIEDELAVIDTEKCIYCSVCAQTCPWNAI 176


>gi|296452544|ref|ZP_06894241.1| ferredoxin [Clostridium difficile NAP08]
 gi|296881044|ref|ZP_06904987.1| ferredoxin [Clostridium difficile NAP07]
 gi|296258649|gb|EFH05547.1| ferredoxin [Clostridium difficile NAP08]
 gi|296427910|gb|EFH13814.1| ferredoxin [Clostridium difficile NAP07]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 15 MAYKITDACISCGA--CEAECPVSCISAGDDAYVIDASSCIDCGSCAGACPVDAPQPE 70


>gi|312793989|ref|YP_004026912.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877607|ref|ZP_07737565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795617|gb|EFR11988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181129|gb|ADQ41299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 57

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCGA--CESECPVQCISAGDGKYVINEEECISCGACANVCPVDAPKP 55


>gi|73540389|ref|YP_294909.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117802|gb|AAZ60065.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 237

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
 gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
          Length = 531

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + + +T+ C+ C  T C + CPVDC    +  L  I P +CI CG CE  CPV+AI
Sbjct: 475 LEFFITDKCVGC--TKCAKACPVDCITGVQKELHVIDPSKCIKCGSCEAACPVNAI 528


>gi|153808350|ref|ZP_01961018.1| hypothetical protein BACCAC_02644 [Bacteroides caccae ATCC 43185]
 gi|160885009|ref|ZP_02066012.1| hypothetical protein BACOVA_03006 [Bacteroides ovatus ATCC 8483]
 gi|237712761|ref|ZP_04543242.1| ferredoxin [Bacteroides sp. D1]
 gi|237718010|ref|ZP_04548491.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|253572210|ref|ZP_04849614.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|255693219|ref|ZP_05416894.1| conserved domain protein [Bacteroides finegoldii DSM 17565]
 gi|260174361|ref|ZP_05760773.1| ferredoxin [Bacteroides sp. D2]
 gi|262409750|ref|ZP_06086288.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|294645353|ref|ZP_06723064.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|298387976|ref|ZP_06997524.1| hypothetical protein HMPREF9007_04780 [Bacteroides sp. 1_1_14]
 gi|298483140|ref|ZP_07001320.1| hypothetical protein HMPREF0106_03607 [Bacteroides sp. D22]
 gi|299147705|ref|ZP_07040768.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|315922629|ref|ZP_07918869.1| ferredoxin [Bacteroides sp. D2]
 gi|149129253|gb|EDM20469.1| hypothetical protein BACCAC_02644 [Bacteroides caccae ATCC 43185]
 gi|156109359|gb|EDO11104.1| hypothetical protein BACOVA_03006 [Bacteroides ovatus ATCC 8483]
 gi|229447173|gb|EEO52964.1| ferredoxin [Bacteroides sp. D1]
 gi|229452651|gb|EEO58442.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|251838390|gb|EES66477.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|260621028|gb|EEX43899.1| conserved domain protein [Bacteroides finegoldii DSM 17565]
 gi|262352403|gb|EEZ01505.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|292639291|gb|EFF57598.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|295084619|emb|CBK66142.1| 4Fe-4S binding domain. [Bacteroides xylanisolvens XB1A]
 gi|298259242|gb|EFI02118.1| hypothetical protein HMPREF9007_04780 [Bacteroides sp. 1_1_14]
 gi|298270657|gb|EFI12238.1| hypothetical protein HMPREF0106_03607 [Bacteroides sp. D22]
 gi|298513888|gb|EFI37774.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|313696504|gb|EFS33339.1| ferredoxin [Bacteroides sp. D2]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV+   EG+ + +I+PD C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACGT--CIDECPVEAISEGDIY-SINPDVCTDCGTCADVCPSEAIHP 54


>gi|291458640|ref|ZP_06598030.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291419173|gb|EFE92892.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    EGE+   +  D CIDCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSCGA--CASACPVQAISEGESKYVVDADSCIDCGACEEVCPTGAITAE 56


>gi|254823188|ref|ZP_05228189.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          intracellulare ATCC 13950]
          Length = 498

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEY 73
          +C+   P +  +     L I P  C+DCG C   CPV AI PDT  +     +++IN+ +
Sbjct: 2  NCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDTRLDTNQLPFVEINASF 61

Query: 74 ATQWPNITTKKESLPSAAKM 93
            + P    + E LP  +K+
Sbjct: 62 YPKRP----EGEKLPPTSKL 77


>gi|310658522|ref|YP_003936243.1| iron-sulfur protein [Clostridium sticklandii DSM 519]
 gi|308825300|emb|CBH21338.1| putative iron-sulfur protein [Clostridium sticklandii]
          Length = 418

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +NCI CK   CV VCPV CF    +  ++ + ++ + C+ CGVC+  C ++AI+
Sbjct: 288 DNCISCK--KCVSVCPVGCFEIKVFNDKDKVVLNSELCLGCGVCQRVCSINAIE 339


>gi|116624720|ref|YP_826876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Solibacter usitatus Ellin6076]
 gi|116227882|gb|ABJ86591.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 83

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 10/63 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C   K   CV+ CPVDC +  ++         L + PD+CIDCG C P CP 
Sbjct: 1  MAYVITDTCT--KDELCVQACPVDCIHPKQDEAGFAEAPQLYVKPDDCIDCGACVPVCPT 58

Query: 53 DAI 55
          ++I
Sbjct: 59 NSI 61


>gi|304316617|ref|YP_003851762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778119|gb|ADL68678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPV+  +EG     +  D CIDCG CE  CP  A+K +
Sbjct: 1  MAHIITDECISCGA--CAAECPVEAIHEGTGKYEVDADTCIDCGACEAVCPTGAVKAE 56


>gi|53711888|ref|YP_097880.1| ferredoxin [Bacteroides fragilis YCH46]
 gi|52214753|dbj|BAD47346.1| ferredoxin [Bacteroides fragilis YCH46]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++E+CI C    C++ CPV    EG+ + +I P++C DCG C   CP +AI P
Sbjct: 1  MAYVISEDCIACGT--CIDECPVGAISEGDIY-SIDPEQCTDCGTCADVCPSEAIHP 54


>gi|299066029|emb|CBJ37210.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|154494844|ref|ZP_02033849.1| hypothetical protein PARMER_03888 [Parabacteroides merdae ATCC
          43184]
 gi|218262678|ref|ZP_03477036.1| hypothetical protein PRABACTJOHN_02715 [Parabacteroides johnsonii
          DSM 18315]
 gi|154085394|gb|EDN84439.1| hypothetical protein PARMER_03888 [Parabacteroides merdae ATCC
          43184]
 gi|218223229|gb|EEC95879.1| hypothetical protein PRABACTJOHN_02715 [Parabacteroides johnsonii
          DSM 18315]
          Length = 56

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+ + +I P+ C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACGT--CIDECPVGAISEGDKY-SIDPEMCTDCGTCADACPTEAIHP 54


>gi|254512467|ref|ZP_05124534.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221536178|gb|EEE39166.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 169

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 23 ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 73


>gi|83746723|ref|ZP_00943772.1| Formate dehydrogenase (cytochrome b) iron-sulfur subunit [Ralstonia
           solanacearum UW551]
 gi|207721373|ref|YP_002251814.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           MolK2]
 gi|207742649|ref|YP_002259041.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum IPO1609]
 gi|83726676|gb|EAP73805.1| Formate dehydrogenase (cytochrome b) iron-sulfur subunit [Ralstonia
           solanacearum UW551]
 gi|206586532|emb|CAQ17119.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum MolK2]
 gi|206594043|emb|CAQ60970.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum IPO1609]
          Length = 228

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|300703376|ref|YP_003744978.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CFBP2957]
 gi|299071039|emb|CBJ42348.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 228

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|17547091|ref|NP_520493.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           GMI1000]
 gi|17429392|emb|CAD16079.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 231

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|229828064|ref|ZP_04454133.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
 gi|229792658|gb|EEP28772.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
          Length = 490

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TY VT+NC  C    C+  C      EG+  + I P +C +CG C   CP +AI   T P
Sbjct: 95  TYTVTDNCRFCLGKACINSCKFGAISEGDLRMHIDPAKCKECGQCAKNCPYEAIVHLTRP 154


>gi|300690757|ref|YP_003751752.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           PSI07]
 gi|299077817|emb|CBJ50455.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|282882984|ref|ZP_06291588.1| ferredoxin [Peptoniphilus lacrimalis 315-B]
 gi|300813228|ref|ZP_07093596.1| ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|281297191|gb|EFA89683.1| ferredoxin [Peptoniphilus lacrimalis 315-B]
 gi|300512681|gb|EFK39813.1| ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 56

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPVDC  +G+ +  I+PD+CIDCG C   CPV A  P+
Sbjct: 1  MAYKITDACIACGA--CQAECPVDCISDGDIY-QINPDQCIDCGSCAGVCPVGAPVPE 55


>gi|311697010|gb|ADP99883.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [marine
          bacterium HP15]
          Length = 160

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 14 ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 64


>gi|194290506|ref|YP_002006413.1| formate dehydrogenase iron-sulfur subunit [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224341|emb|CAQ70352.1| FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT [Cupriavidus taiwanensis
           LMG 19424]
          Length = 232

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|188587472|ref|YP_001919017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352159|gb|ACB86429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 56

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +TE CI C    C   CP +   EGE    I  D CIDCG C   CPVDAI
Sbjct: 1  MAYKITEECIKCGA--CEPECPTEAISEGEEMYVIDADNCIDCGACADVCPVDAI 53


>gi|296109958|ref|YP_003616907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434772|gb|ADG13943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 151

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+ + C+LC    C EVCP +C ++GE  + I+ ++C+ CG C   CP  AIK
Sbjct: 15 IYVIKDRCVLCNL--CKEVCPANCIFDGEESVEINKEKCMFCGRCVKVCPTKAIK 67


>gi|160937728|ref|ZP_02085088.1| hypothetical protein CLOBOL_02621 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439373|gb|EDP17125.1| hypothetical protein CLOBOL_02621 [Clostridium bolteae ATCC
          BAA-613]
          Length = 56

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ C+ C    C   CPV    EG++   I  D CIDCG C   CP  AI 
Sbjct: 1  MAYVISDACVSCGS--CAAECPVSAISEGDSQYVIDADTCIDCGTCAATCPTGAIS 54


>gi|126727364|ref|ZP_01743199.1| formate dehydrogenase, iron-sulfur subunit, putative
           [Rhodobacterales bacterium HTCC2150]
 gi|126703359|gb|EBA02457.1| formate dehydrogenase, iron-sulfur subunit, putative
           [Rhodobacterales bacterium HTCC2150]
          Length = 197

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQSEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|255654255|ref|ZP_05399664.1| ferredoxin [Clostridium difficile QCD-23m63]
          Length = 56

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYKITDACISCGA--CEAECPVSCISAGDDAYVIDASSCIDCGSCAGACPVDAPQPE 56


>gi|94311692|ref|YP_584902.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355544|gb|ABF09633.1| formate dehydrogenase iron-sulfur subunit [Cupriavidus
           metallidurans CH34]
          Length = 226

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  +E   
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSEGTF 111

Query: 64  ELWLKIN 70
            +  K++
Sbjct: 112 GVRGKMD 118


>gi|85704202|ref|ZP_01035305.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. 217]
 gi|149201547|ref|ZP_01878521.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|85671522|gb|EAQ26380.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. 217]
 gi|149144595|gb|EDM32624.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 198

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGIVLHSKDLCIGCGYCFYACPFGA 101


>gi|113868891|ref|YP_727380.1| formate dehydrogenase iron-sulfur subunit [Ralstonia eutropha H16]
 gi|113527667|emb|CAJ94012.1| formate dehydrogenase iron-sulfur subunit [Ralstonia eutropha H16]
          Length = 225

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|222528526|ref|YP_002572408.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|312623185|ref|YP_004024798.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455373|gb|ACM59635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|312203652|gb|ADQ46979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor kronotskyensis 2002]
          Length = 57

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCGA--CESECPVSCISPGDGKYVINEEECISCGACANVCPVDAPKP 55


>gi|145589578|ref|YP_001156175.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047984|gb|ABP34611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 218

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A + +T+   
Sbjct: 52  VSVACMHCTDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSLACPFGAPQFETKGAF 111

Query: 64  ELWLKIN 70
               K++
Sbjct: 112 GTRSKMD 118


>gi|99080243|ref|YP_612397.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036523|gb|ABF63135.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 197

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|259416768|ref|ZP_05740688.1| formate dehydrogenase iron-sulfur subunit [Silicibacter sp.
           TrichCH4B]
 gi|259348207|gb|EEW59984.1| formate dehydrogenase iron-sulfur subunit [Silicibacter sp.
           TrichCH4B]
          Length = 197

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|241663767|ref|YP_002982127.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|240865794|gb|ACS63455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 222

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|187929657|ref|YP_001900144.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|309781575|ref|ZP_07676310.1| formate dehydrogenase [Ralstonia sp. 5_7_47FAA]
 gi|187726547|gb|ACD27712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|308919680|gb|EFP65342.1| formate dehydrogenase [Ralstonia sp. 5_7_47FAA]
          Length = 222

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGA 102


>gi|56696671|ref|YP_167032.1| formate dehydrogenase, iron-sulfur subunit, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678408|gb|AAV95074.1| formate dehydrogenase, iron-sulfur subunit, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 197

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|312128363|ref|YP_003993237.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
 gi|312134414|ref|YP_004001752.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|311774465|gb|ADQ03952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|311778382|gb|ADQ07868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
          Length = 57

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCGA--CESECPVQCISPGDGKYVINEEECISCGACANVCPVDAPKP 55


>gi|197302881|ref|ZP_03167933.1| hypothetical protein RUMLAC_01610 [Ruminococcus lactaris ATCC
          29176]
 gi|197298118|gb|EDY32666.1| hypothetical protein RUMLAC_01610 [Ruminococcus lactaris ATCC
          29176]
          Length = 56

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M  V+++ C+ C    C   CPV    EGE+   +  D CIDCG CE  CPV AI 
Sbjct: 1  MARVISDECVKCGT--CEAECPVSAISEGEDTYVVDADSCIDCGACEAACPVGAIS 54


>gi|126697745|ref|YP_001086642.1| ferredoxin [Clostridium difficile 630]
 gi|254973833|ref|ZP_05270305.1| ferredoxin [Clostridium difficile QCD-66c26]
 gi|255091219|ref|ZP_05320697.1| ferredoxin [Clostridium difficile CIP 107932]
 gi|255099336|ref|ZP_05328313.1| ferredoxin [Clostridium difficile QCD-63q42]
 gi|255305170|ref|ZP_05349342.1| ferredoxin [Clostridium difficile ATCC 43255]
 gi|255312877|ref|ZP_05354460.1| ferredoxin [Clostridium difficile QCD-76w55]
 gi|255515636|ref|ZP_05383312.1| ferredoxin [Clostridium difficile QCD-97b34]
 gi|255648730|ref|ZP_05395632.1| ferredoxin [Clostridium difficile QCD-37x79]
 gi|260681952|ref|YP_003213237.1| ferredoxin [Clostridium difficile CD196]
 gi|260685550|ref|YP_003216683.1| ferredoxin [Clostridium difficile R20291]
 gi|306518850|ref|ZP_07405197.1| ferredoxin [Clostridium difficile QCD-32g58]
 gi|115249182|emb|CAJ66994.1| Ferredoxin (4Fe-4S cluster-containing protein) (fdx-like)
          [Clostridium difficile]
 gi|260208115|emb|CBA60382.1| ferredoxin [Clostridium difficile CD196]
 gi|260211566|emb|CBE01761.1| ferredoxin [Clostridium difficile R20291]
          Length = 56

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYKITDACISCGA--CEAECPVSCISAGDDAYVIDAGSCIDCGSCAGACPVDAPQPE 56


>gi|114763304|ref|ZP_01442728.1| formate dehydrogenase, iron-sulfur subunit, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114544102|gb|EAU47112.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. HTCC2601]
          Length = 197

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|149375897|ref|ZP_01893664.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
 gi|149359777|gb|EDM48234.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
          Length = 202

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 56  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGA 106


>gi|126739787|ref|ZP_01755478.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. SK209-2-6]
 gi|126719019|gb|EBA15730.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. SK209-2-6]
          Length = 197

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|110680099|ref|YP_683106.1| formate dehydrogenase Fe-S subunit [Roseobacter denitrificans OCh
           114]
 gi|163731481|ref|ZP_02138928.1| formate dehydrogenase Fe-S subunit [Roseobacter litoralis Och 149]
 gi|109456215|gb|ABG32420.1| formate dehydrogenase Fe-S subunit [Roseobacter denitrificans OCh
           114]
 gi|161394935|gb|EDQ19257.1| formate dehydrogenase Fe-S subunit [Roseobacter litoralis Och 149]
          Length = 198

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 102


>gi|166030704|ref|ZP_02233533.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
          27755]
 gi|166029496|gb|EDR48253.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
          27755]
          Length = 56

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+ ++CI C    C   CPV    EG+    I+ D CIDCG C  +CPV AI 
Sbjct: 1  MAHVIGDDCISCGS--CEAECPVSAISEGDGKYEINADACIDCGACAAQCPVGAIS 54


>gi|163736978|ref|ZP_02144396.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis BS107]
 gi|163740599|ref|ZP_02147993.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161386457|gb|EDQ10832.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161389582|gb|EDQ13933.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis BS107]
          Length = 197

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|126732914|ref|ZP_01748704.1| formate dehydrogenase, iron-sulfur subunit, putative [Sagittula
           stellata E-37]
 gi|126706620|gb|EBA05695.1| formate dehydrogenase, iron-sulfur subunit, putative [Sagittula
           stellata E-37]
          Length = 197

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|325288816|ref|YP_004264997.1| ferridoxin [Syntrophobotulus glycolicus DSM 8271]
 gi|324964217|gb|ADY54996.1| ferridoxin [Syntrophobotulus glycolicus DSM 8271]
          Length = 56

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T++CI C    CV+ CP +   EG++   I  D C DCGVC   C  +AI
Sbjct: 1  MAYVITDDCISCGA--CVDECPANAISEGDSKYVIDADSCADCGVCVDACAANAI 53


>gi|300814458|ref|ZP_07094720.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511428|gb|EFK38666.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 505

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y VT NC  C    C+ VCPV+    G++   I  ++CI CG C   CP +AI
Sbjct: 112 SYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKEKCIRCGRCHEACPYNAI 165


>gi|254474808|ref|ZP_05088194.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214029051|gb|EEB69886.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 197

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|308371790|ref|ZP_07667247.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu004]
 gi|308335377|gb|EFP24228.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu004]
          Length = 555

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEY 73
          +C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ Y
Sbjct: 2  NCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINASY 61

Query: 74 ATQWP 78
            + P
Sbjct: 62 YPKRP 66


>gi|308231662|ref|ZP_07663905.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu001]
 gi|308370526|ref|ZP_07666957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu003]
 gi|308374124|ref|ZP_07667719.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu006]
 gi|308375281|ref|ZP_07667984.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu007]
 gi|308376537|ref|ZP_07668296.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu008]
 gi|308377537|ref|ZP_07668536.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu009]
 gi|308378749|ref|ZP_07668818.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu010]
 gi|308379895|ref|ZP_07669070.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu011]
 gi|308397494|ref|ZP_07492520.2| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu012]
 gi|308216365|gb|EFO75764.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu001]
 gi|308331656|gb|EFP20507.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu003]
 gi|308342918|gb|EFP31769.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu006]
 gi|308346746|gb|EFP35597.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu007]
 gi|308350660|gb|EFP39511.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu008]
 gi|308355320|gb|EFP44171.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu009]
 gi|308359259|gb|EFP48110.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu010]
 gi|308363169|gb|EFP52020.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu011]
 gi|308366823|gb|EFP55674.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu012]
          Length = 555

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEY 73
          +C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ Y
Sbjct: 2  NCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINASY 61

Query: 74 ATQWP 78
            + P
Sbjct: 62 YPKRP 66


>gi|307243643|ref|ZP_07525786.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
 gi|306493012|gb|EFM65022.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
          Length = 55

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  EG+ +  I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIKDSCIACGA--CAAECPVSCISEGDIYT-IDASACIDCGSCAGVCPVDAPQPE 55


>gi|225386321|ref|ZP_03756085.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
          DSM 15981]
 gi|225047600|gb|EEG57846.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
          DSM 15981]
          Length = 56

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++C+ C    C   CPV    EG++   I  D CIDCG C   CP  AI 
Sbjct: 1  MAYVINDSCVSCGS--CAAECPVGAISEGDSQYVIDADTCIDCGTCAGTCPTGAIS 54


>gi|73670190|ref|YP_306205.1| hypothetical protein Mbar_A2721 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397352|gb|AAZ71625.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 369

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VV E CI C+   C+++CPV   Y       I P+ CI CG C   CPV AI  D E  
Sbjct: 190 HVVEEKCIGCQ--KCIKICPVGAPYLLGEVSMIDPNICISCGQCMEVCPVGAITIDWEHD 247

Query: 63  LELWLKINSEYA 74
           +  +L+  +EYA
Sbjct: 248 IPNFLECLTEYA 259


>gi|188586058|ref|YP_001917603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350745|gb|ACB85015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 70

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + + +TE CI C    C++ CPVD   EGE   +I  D C +CG C  ECP DAI
Sbjct: 16 VAFRITEECIACGS--CLDACPVDAIKEGEEIFSITED-CTECGSCVDECPTDAI 67


>gi|84514365|ref|ZP_01001729.1| formate dehydrogenase iron-sulfur subunit [Loktanella vestfoldensis
           SKA53]
 gi|84511416|gb|EAQ07869.1| formate dehydrogenase iron-sulfur subunit [Loktanella vestfoldensis
           SKA53]
          Length = 198

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCASVCPVDCFYTTDDAVVLHNKDTCIGCGYCSYACPFGA 101


>gi|260434033|ref|ZP_05788004.1| formate dehydrogenase iron-sulfur subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417861|gb|EEX11120.1| formate dehydrogenase iron-sulfur subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 197

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|315187269|gb|EFU21025.1| ferredoxin [Spirochaeta thermophila DSM 6578]
          Length = 56

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+T++C+ C    C+  CPV+   EG  ++ I PD+C DCG C   CP +AI P
Sbjct: 1  MAYVITDDCVACGT--CLPECPVEAISEGNPYV-IDPDKCTDCGSCAEVCPAEAIHP 54


>gi|255009761|ref|ZP_05281887.1| ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 56

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+ + +I P++C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACGT--CIDECPVGAISEGDIY-SIDPEQCTDCGTCADVCPSEAIHP 54


>gi|118591771|ref|ZP_01549167.1| formate dehydrogenase, iron-sulfur subunit, putative [Stappia
           aggregata IAM 12614]
 gi|118435764|gb|EAV42409.1| formate dehydrogenase, iron-sulfur subunit, putative [Stappia
           aggregata IAM 12614]
          Length = 197

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|313205341|ref|YP_004043998.1| ferredoxin [Paludibacter propionicigenes WB4]
 gi|312444657|gb|ADQ81013.1| ferredoxin [Paludibacter propionicigenes WB4]
          Length = 56

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++E+CI C    C+  CPV+   EG+ ++ I  D C DCG C   CP +AI P
Sbjct: 1  MAYVISEDCIACGS--CISECPVEAISEGDIYV-IDADVCTDCGTCADVCPSEAISP 54


>gi|260888301|ref|ZP_05899564.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838372|ref|YP_004412952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
 gi|260861837|gb|EEX76337.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746136|gb|AEB99492.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
          Length = 56

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y ++E CI C    C   CPV+   EGE+   I  ++CI+CG C   CPV AI 
Sbjct: 1  MAYKISEECISCG--SCAGTCPVEAISEGESQYVIDEEKCIECGACAEGCPVSAIS 54


>gi|171463322|ref|YP_001797435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192860|gb|ACB43821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 252

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           V+  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A
Sbjct: 86  VSVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSFACPFGA 136


>gi|163794797|ref|ZP_02188767.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180070|gb|EDP64595.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 197

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFYE    + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYESNEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|152981586|ref|YP_001353659.1| formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase
           beta subunit) [Janthinobacterium sp. Marseille]
 gi|151281663|gb|ABR90073.1| formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase
           beta subunit) [Janthinobacterium sp. Marseille]
          Length = 209

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY  E  + +H  D CI CG C   CP  A
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEEGVVLHDKDICIGCGYCSYACPFGA 102


>gi|317497055|ref|ZP_07955382.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895600|gb|EFV17755.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 481

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT NC  C   DC++ C       G     I P +C +CG+C   CP +AI   + P
Sbjct: 92  SYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRP 151


>gi|149194120|ref|ZP_01871218.1| formate dehydrogenase, iron-sulfur chain [Caminibacter
           mediatlanticus TB-2]
 gi|149136073|gb|EDM24551.1| formate dehydrogenase, iron-sulfur chain [Caminibacter
           mediatlanticus TB-2]
          Length = 197

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           + V+  C+ C    C +VCPVDCFY  E+ + +H  D+CI CG C   CP  A
Sbjct: 53  FSVSVACMHCTDAPCEQVCPVDCFYIREDGIVLHDKDKCIGCGYCLYACPFGA 105


>gi|229825982|ref|ZP_04452051.1| hypothetical protein GCWU000182_01346 [Abiotrophia defectiva ATCC
          49176]
 gi|229789724|gb|EEP25838.1| hypothetical protein GCWU000182_01346 [Abiotrophia defectiva ATCC
          49176]
          Length = 56

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ + CI C    C  VCPV+C  EG     +    C+DCG CE  CP  AI
Sbjct: 1  MAHVINDECISCG--ACASVCPVECISEGSVHYEVDASACVDCGACEESCPTGAI 53


>gi|167767746|ref|ZP_02439799.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|167710485|gb|EDS21064.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|291558899|emb|CBL37699.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 481

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT NC  C   DC++ C       G     I P +C +CG+C   CP +AI   + P
Sbjct: 92  SYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRP 151


>gi|34541097|ref|NP_905576.1| ferredoxin, 4Fe-4S [Porphyromonas gingivalis W83]
 gi|188994759|ref|YP_001929011.1| ferredoxin 4Fe-4S [Porphyromonas gingivalis ATCC 33277]
 gi|34397412|gb|AAQ66475.1| ferredoxin, 4Fe-4S [Porphyromonas gingivalis W83]
 gi|188594439|dbj|BAG33414.1| ferredoxin 4Fe-4S [Porphyromonas gingivalis ATCC 33277]
          Length = 56

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG +   I  D CIDCG C   CP +AI P
Sbjct: 1  MAYVINDSCVACGS--CIDECPVSAISEG-SIYKIDADTCIDCGTCAAACPSEAIHP 54


>gi|294146722|ref|YP_003559388.1| iron-sulfur protein [Sphingobium japonicum UT26S]
 gi|292677139|dbj|BAI98656.1| iron-sulfur protein [Sphingobium japonicum UT26S]
          Length = 837

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTE 60
           V  +C  C+H  C+  CP +  + G +      + CI CG C+  CP   I+    P  +
Sbjct: 698 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFIDETCIGCGNCQRNCPYGVIRMDSVPPKK 757

Query: 61  PGLELWL 67
           PGL  W+
Sbjct: 758 PGLLSWM 764


>gi|239628874|ref|ZP_04671905.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridiales bacterium 1_7_47_FAA]
 gi|239519020|gb|EEQ58886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridiales bacterium 1_7_47FAA]
          Length = 55

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++C+ C    C   CPV    EG+    I  D CIDCG C   CP  AI+
Sbjct: 1  MAYVINDSCVSCGS--CAGECPVGAISEGDGKYVIDADTCIDCGTCAATCPTGAIE 54


>gi|302871132|ref|YP_003839768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor obsidiansis OB47]
 gi|302573991|gb|ADL41782.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor obsidiansis OB47]
          Length = 57

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ ++CI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCGA--CESECPVQCISPGDGKYVINEEQCISCGACANVCPVDAPKP 55


>gi|153810606|ref|ZP_01963274.1| hypothetical protein RUMOBE_00987 [Ruminococcus obeum ATCC 29174]
 gi|149833785|gb|EDM88866.1| hypothetical protein RUMOBE_00987 [Ruminococcus obeum ATCC 29174]
 gi|295108222|emb|CBL22175.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus obeum A2-162]
          Length = 57

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+++ C+ C    C   CP +   EG     I  D C+DCG C   CP +AI P
Sbjct: 1  MAYVISDECVSCG--TCAAECPAEAISEGAEHFEIDADACLDCGTCADACPTEAIHP 55


>gi|332654077|ref|ZP_08419821.1| conserved domain protein [Ruminococcaceae bacterium D16]
 gi|332517163|gb|EGJ46768.1| conserved domain protein [Ruminococcaceae bacterium D16]
          Length = 56

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ CI C    C + CPV    +G +   I+   C+DCG C   CP+ AI 
Sbjct: 1  MAYVISDACISCG--SCADACPVGAIAQGADHYEINAGACLDCGSCADSCPMSAIS 54


>gi|171060397|ref|YP_001792746.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170777842|gb|ACB35981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  ++ + +H  D CI CG C   CP  A +  +    
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYRTDDGVVLHDKDICIGCGYCSYACPFGAPQFPSNGAF 110

Query: 64  ELWLKIN 70
            L  K++
Sbjct: 111 GLRGKMD 117


>gi|291280537|ref|YP_003497372.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
 gi|290755239|dbj|BAI81616.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
          Length = 56

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+T+ C  C    C + CPV    EG+    I PD C DCG C   CPVDAI+
Sbjct: 1  MAHVITDECTNCGA--CEDECPVGAISEGDGKRVIDPDTCTDCGACAEVCPVDAIE 54


>gi|260778119|ref|ZP_05887012.1| ferredoxin [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606132|gb|EEX32417.1| ferredoxin [Vibrio coralliilyticus ATCC BAA-450]
          Length = 75

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI-KPDTEPGLE-LWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C  EC  +AI + D  P  + L++++N++ A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVDECDANAIFQEDEVPADQTLYVELNAQLAELWPVQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  EKWNGVPDKL 70


>gi|238917868|ref|YP_002931385.1| hypothetical protein EUBELI_01949 [Eubacterium eligens ATCC
          27750]
 gi|238873228|gb|ACR72938.1| Hypothetical protein EUBELI_01949 [Eubacterium eligens ATCC
          27750]
          Length = 56

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++CI C    C   CPV+   EG     I+ D C+DCG C   CPV A  P
Sbjct: 1  MAYVINDDCISCGA--CAAGCPVEAISEGAAHYEINADVCVDCGACAGTCPVGAPNP 55


>gi|18977101|ref|NP_578458.1| mulitcopper oxidase domain-containing protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892744|gb|AAL80853.1| multi domain protein containing corrinoid/iron-sulfur region
           [Pyrococcus furiosus DSM 3638]
          Length = 388

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHP--DECIDCGVCEPECPVDAIKPDTEPG 62
           E C  C    CV+VCP  C+  +GEN   + P  D+C+ CG C  +CP +A++ +   G
Sbjct: 304 ERCTGCGV--CVDVCPRACYEVDGENHTVMMPRADKCVQCGACIVQCPFEALRFEAPDG 360


>gi|291542068|emb|CBL15178.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus bromii L2-63]
          Length = 56

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y ++++CI+C    C + CP D   EG+    I+ D C+DCG C   CPV A
Sbjct: 1  MAYTISDDCIMCGA--CADNCPCDAISEGDGKYEINADACVDCGSCAEVCPVGA 52


>gi|149920538|ref|ZP_01909005.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
 gi|149818582|gb|EDM78028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
          Length = 573

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T+ VT  C  C +  CV +CPV   Y+ ++  +    D CI C  C   CP DAI  D +
Sbjct: 51  TFQVTR-CNHCANPPCVRICPVTAMYQRDDGIVEFDKDACIGCKACMQACPYDAIHIDPD 109

Query: 61  PG 62
            G
Sbjct: 110 TG 111


>gi|160881872|ref|YP_001560840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium phytofermentans ISDg]
 gi|160430538|gb|ABX44101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 55

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ + CI C    C   CPV    EG +   I  D C+DCG C   CP  AI+
Sbjct: 1  MAYVINDGCISCGA--CASECPVGAISEGASHYEIDADACLDCGACASTCPTGAIE 54


>gi|83855227|ref|ZP_00948757.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83941749|ref|ZP_00954211.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. EE-36]
 gi|83843070|gb|EAP82237.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83847569|gb|EAP85444.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. EE-36]
          Length = 197

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ ++ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDDGIVLHSKDLCIGCGYCFYACPFGA 101


>gi|307297192|ref|ZP_07577004.1| cyclic nucleotide-binding protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877363|gb|EFN08595.1| cyclic nucleotide-binding protein [Sphingobium chlorophenolicum
           L-1]
          Length = 841

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTE 60
           V  +C  C+H  C+  CP +  + G +      + CI CG C+  CP   I+    P  +
Sbjct: 702 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFIDETCIGCGNCQRNCPYGVIRMDSVPPKK 761

Query: 61  PGLELWL 67
           PGL  W+
Sbjct: 762 PGLLSWM 768


>gi|237654364|ref|YP_002890678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237625611|gb|ACR02301.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 212

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ E+ + +H  D+CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYKTEDGVVLHDKDKCIGCGYCFYACPFGA 101


>gi|289423315|ref|ZP_06425123.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156246|gb|EFD04903.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 55

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  +G+ + +I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIKDSCIACGA--CAAECPVSCISDGDIY-SIDASACIDCGSCAGVCPVDAPQPE 55


>gi|124266363|ref|YP_001020367.1| formate dehydrogenase iron-sulfur subunit [Methylibium
           petroleiphilum PM1]
 gi|124259138|gb|ABM94132.1| formate dehydrogenase iron-sulfur subunit [Methylibium
           petroleiphilum PM1]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  T    
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSYACPFGAPQFPTNGTF 110

Query: 64  ELWLKIN 70
            L  K++
Sbjct: 111 GLRGKMD 117


>gi|87198326|ref|YP_495583.1| cyclic nucleotide-binding domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134007|gb|ABD24749.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 858

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTE 60
           V  +C  C+H  C+  CP +  + G +      D CI CG C+  CP   I+    P  +
Sbjct: 712 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFINDTCIGCGNCQRNCPYGVIRMDKVPPKK 771

Query: 61  PGLELWL 67
           P L  WL
Sbjct: 772 PSLLSWL 778


>gi|261252043|ref|ZP_05944617.1| ferredoxin [Vibrio orientalis CIP 102891]
 gi|260938916|gb|EEX94904.1| ferredoxin [Vibrio orientalis CIP 102891]
          Length = 75

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C  EC   AI  + E      L++++N+E A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVDECDAHAIFQEDEVPDDQTLFIELNAELAELWPVQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  EKWNGVPDKL 70


>gi|114567614|ref|YP_754768.1| ferredoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338549|gb|ABI69397.1| ferredoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 58

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y++T+ CI C    CV+ CPV+   EGE+   I P+ C +CG C   CPV+A  P
Sbjct: 1  MSYIITDECISCGI--CVDECPVEAISEGEDKFEIDPELCTECGSCADVCPVEAPIP 55


>gi|169333814|ref|ZP_02861007.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259379|gb|EDS73345.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
          Length = 505

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  VT NC  C    C EVCPVD  Y       I+ D+C+ CG C   CP +AI
Sbjct: 110 TVFVTNNCRGCYAHPCSEVCPVDAVYFENGKSVINKDKCVRCGRCVEACPYNAI 163


>gi|323483907|ref|ZP_08089282.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323693503|ref|ZP_08107710.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402745|gb|EGA95068.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323502460|gb|EGB18315.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
          Length = 484

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C   CP      G N   I PD+C +CG C   CP +AI     P
Sbjct: 94  SYTVTDNCRKCMGKACQSSCPFGAITMGNNKAFIDPDKCRECGKCATACPYNAIAHLERP 153



 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 17  CVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C +VCPVD   Y+      I   +CI CG C   CP  AI   T
Sbjct: 154 CKKVCPVDAITYDEYGICVIDEKKCIQCGACIHSCPFGAIGSKT 197


>gi|254485944|ref|ZP_05099149.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseobacter sp. GAI101]
 gi|214042813|gb|EEB83451.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseobacter sp. GAI101]
          Length = 197

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ ++ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|188585282|ref|YP_001916827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349969|gb|ACB84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD 58
           TY+ T  C  C H  CVEVCP D    Y+ E+ L +H   ECI C  CE  CP   +  +
Sbjct: 52  TYIPTL-CNHCDHAPCVEVCPTDPKAMYKTEHGLTLHDSKECIGCRQCEDACPYGVVYFN 110

Query: 59  TEPGLELW 66
           +E   E W
Sbjct: 111 SEKAHEFW 118


>gi|304439744|ref|ZP_07399642.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304371731|gb|EFM25339.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 79

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M +++T+ CI C    C   CPV+C  EG  +  I  D+CIDCG C   CP  A +P+ 
Sbjct: 24 MAHIITDACIACGA--CQPECPVNCISEGAIY-EIDQDQCIDCGACSSVCPTGAAQPEA 79



 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          FY G     I  D CI CG C+PECPV+ I 
Sbjct: 18 FYGGAIMAHIITDACIACGACQPECPVNCIS 48


>gi|95931411|ref|ZP_01314119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132529|gb|EAT14220.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 165

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ CI C+   CV+VCP +   EG +   ++   CI C VC+ ECPV+AI+  TE
Sbjct: 58  SQMCINCQT--CVDVCPTNAIVEGNDTCVVNATLCIGCQVCDAECPVEAIEEGTE 110



 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
           CI C+  D    CPV+   EG   +A  ++ DEC+ CG C  ECP +AI 
Sbjct: 90  CIGCQVCD--AECPVEAIEEGTEIIAPTVYTDECVACGACTNECPTNAIS 137


>gi|253996419|ref|YP_003048483.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
 gi|253983098|gb|ACT47956.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
          Length = 824

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---DTEP 61
           V  +C  C+H  C++ CP D  +   +      D CI CG C+  CP D I+      +P
Sbjct: 688 VPTSCRHCEHPHCMKDCPPDAIHRAPHGEVYIDDSCIGCGNCQQNCPYDVIQMAVIQDQP 747

Query: 62  GLELW 66
              LW
Sbjct: 748 EQSLW 752


>gi|154498692|ref|ZP_02037070.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
          29799]
 gi|150272431|gb|EDM99625.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
          29799]
          Length = 73

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +C+ C    C   CPV    +G+    I  D CIDCG C   CPV AI 
Sbjct: 18 MAYVIGNDCVSCG--SCEGACPVSAISQGDEHYVIDADTCIDCGTCAETCPVGAIA 71


>gi|28212003|ref|NP_782947.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
 gi|28204446|gb|AAO36884.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
          Length = 494

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVTE C  C    C+EVCP            I+ + C +CG+CE  CP +AI     P
Sbjct: 104 YVVTEACRGCLQHKCMEVCPAGSINRAAGKAYINHETCKECGLCESACPYNAIAEVMRP 162


>gi|149176958|ref|ZP_01855567.1| ferredoxin [Planctomyces maris DSM 8797]
 gi|148844213|gb|EDL58567.1| ferredoxin [Planctomyces maris DSM 8797]
          Length = 61

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI-KPDTEP-GLELWLKINSEYATQWPNITTKKESL 87
           + I+PDECIDC  C PECPV+AI   D  P   + + +IN++ + + P IT KKE L
Sbjct: 1  MVYINPDECIDCEACVPECPVEAIFHEDNVPEKWQEYTQINADKSQELPVITEKKEPL 58


>gi|212690928|ref|ZP_03299056.1| hypothetical protein BACDOR_00416 [Bacteroides dorei DSM 17855]
 gi|237712588|ref|ZP_04543069.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|237726898|ref|ZP_04557379.1| ferredoxin [Bacteroides sp. D4]
 gi|254882246|ref|ZP_05254956.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|265752267|ref|ZP_06088060.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|294776421|ref|ZP_06741899.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643192|ref|ZP_07997820.1| ferredoxin [Bacteroides sp. 3_1_40A]
 gi|212666160|gb|EEB26732.1| hypothetical protein BACDOR_00416 [Bacteroides dorei DSM 17855]
 gi|229435424|gb|EEO45501.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
 gi|229453909|gb|EEO59630.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|254835039|gb|EET15348.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|263237059|gb|EEZ22529.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|294449747|gb|EFG18269.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317385096|gb|EFV66047.1| ferredoxin [Bacteroides sp. 3_1_40A]
          Length = 55

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV+   EG+ + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACGT--CIDECPVEAISEGDKY-SINPDLCTECGTCADACPSEAIH 53


>gi|156742145|ref|YP_001432274.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233473|gb|ABU58256.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 565

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV +CPV   Y+  +  +   P  CI C  C   CP DAI  D E
Sbjct: 58  CNHCANPPCVRICPVTAMYQRADGIVEFDPKACIGCKACLQACPYDAIYIDPE 110


>gi|148553514|ref|YP_001261096.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
 gi|148498704|gb|ABQ66958.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
          Length = 801

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  +C  C+H  C+  CP    + G++      D CI CG C+  CP   I+ + EP
Sbjct: 662 VPTSCRHCEHPHCMADCPPTAIHRGQDGEVYIDDTCIGCGNCQRNCPYGVIRMEKEP 718


>gi|255602894|ref|XP_002537944.1| Ferredoxin 7Fe, putative [Ricinus communis]
 gi|223514472|gb|EEF24439.1| Ferredoxin 7Fe, putative [Ricinus communis]
          Length = 87

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 10/63 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+   CI      CVE+CPV+C   G N         + I+PD CIDCG C   CPV
Sbjct: 1  MAYVIAAPCI--ADYSCVEICPVNCISPGPNEEEFDDAEQMYINPDVCIDCGACRDVCPV 58

Query: 53 DAI 55
           AI
Sbjct: 59 LAI 61


>gi|159043060|ref|YP_001531854.1| formate dehydrogenase iron-sulfur subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157910820|gb|ABV92253.1| formate dehydrogenase iron-sulfur subunit [Dinoroseobacter shibae
           DFL 12]
          Length = 198

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTDDAVVLHSKDTCIGCGYCFYACPFGA 101


>gi|224373329|ref|YP_002607701.1| formate dehydrogenase subunit B [Nautilia profundicola AmH]
 gi|223588850|gb|ACM92586.1| formate dehydrogenase subunit B [Nautilia profundicola AmH]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C    C +VCPVDCFY  E+ + +H  D+CI CG C   CP  A
Sbjct: 59  CMHCTDAPCAQVCPVDCFYIREDGIVLHDKDKCIGCGYCLYACPFGA 105


>gi|92118594|ref|YP_578323.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801488|gb|ABE63863.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C  VCPV+CFY  E+ + +H  D CI CG C   CP  A +       
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTEDGVVLHSKDLCIGCGYCFYACPFGAPQ------- 103

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             + K+++  +    +  T     P A   DG K++YEKY
Sbjct: 104 --YPKVSNFGSRGKMDKCTFCAGGPEA---DGSKEEYEKY 138


>gi|126176322|ref|YP_001052471.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|153002606|ref|YP_001368287.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160877327|ref|YP_001556643.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|304412797|ref|ZP_07394399.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307461|ref|ZP_07587196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|125999527|gb|ABN63602.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
 gi|151367224|gb|ABS10224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160862849|gb|ABX51383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|304348877|gb|EFM13293.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910249|gb|EFN40682.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|315269532|gb|ADT96385.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|220927620|ref|YP_002504529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          cellulolyticum H10]
 gi|219997948|gb|ACL74549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          cellulolyticum H10]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + + CI C    C   CPV C   G++   I  D CIDCG C   CPVDA
Sbjct: 1  MAYSINDACISCGA--CESECPVSCITAGDSIYVIDEDTCIDCGACANVCPVDA 52


>gi|319764052|ref|YP_004127989.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|330823673|ref|YP_004386976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|317118613|gb|ADV01102.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|329309045|gb|AEB83460.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTEEGIVLHDKDVCIGCGYCSYACPFGA 101


>gi|134094637|ref|YP_001099712.1| formate dehydrogenase iron-sulfur subunit FdnH [Herminiimonas
           arsenicoxydans]
 gi|133738540|emb|CAL61585.1| formate dehydrogenase iron-sulfur subunit [Herminiimonas
           arsenicoxydans]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  +    
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSYACPFGAPQFPSNGAF 111

Query: 64  ELWLKIN 70
            L  K++
Sbjct: 112 GLRGKMD 118


>gi|325295518|ref|YP_004282032.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065966|gb|ADY73973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    C  VCPV     G+N++ ++ ++CIDC +C   CP  AI+P+
Sbjct: 58  QCRQCDDAPCANVCPVGALRFGKNYIEVYEEKCIDCKMCVMVCPFGAIRPE 108


>gi|313889048|ref|ZP_07822706.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844921|gb|EFR32324.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 501

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y  T+NC  C    C+ VCPV+    G++   I  D+C+ CG C   CP  AI
Sbjct: 112 AYYTTDNCRKCLAHPCINVCPVNAISMGKDRTIIDKDKCVRCGRCHDACPYSAI 165


>gi|331083579|ref|ZP_08332690.1| ferredoxin [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403790|gb|EGG83342.1| ferredoxin [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CPV+   EG++   I  D C+DCG C   CP +AI
Sbjct: 1  MAYVITDECVSCGT--CAGECPVEAISEGDDKYVIDADTCVDCGTCAGVCPTEAI 53


>gi|23014297|ref|ZP_00054120.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 196

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  LSVACMHCSDAPCMAVCPVDCFYQTSDGIVLHNKDLCIGCGYCFYACPFGA 101


>gi|167622043|ref|YP_001672337.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352065|gb|ABZ74678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 559

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V TENC LC    CV  CP     +G +  A+H    +C+ CG+CE  CP   I
Sbjct: 424 VNTENCTLC--MSCVSTCPTMALTDGGDLPALHFVEQDCVQCGLCETACPEKVI 475


>gi|225023979|ref|ZP_03713171.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
 gi|224943004|gb|EEG24213.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
          Length = 291

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD        +  +  DEC  CG+C P CPVD I+
Sbjct: 74  LAYIDETACIGC--TACIKACPVDAILGASKLMHTVLADECTGCGLCLPPCPVDCIR 128


>gi|302343580|ref|YP_003808109.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301640193|gb|ADK85515.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 1011

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV E C  C    CV  CP+   F   + +  I P++C+ CG+C  ECP  AI+
Sbjct: 939 VVGEMCAAC--LVCVRACPIGVPFINADGYSQIDPEKCLGCGICAAECPAKAIQ 990


>gi|291519873|emb|CBK75094.1| Iron only hydrogenase large subunit, C-terminal domain
           [Butyrivibrio fibrisolvens 16/4]
          Length = 492

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y VT+NC  C    C+  C       GE  + I P +C +CG+C  ECP  AI
Sbjct: 95  SYSVTDNCRFCLGKACLNSCKFGAITPGERRMHIDPTKCKECGMCAKECPYQAI 148


>gi|260437855|ref|ZP_05791671.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809880|gb|EFF69085.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV++++C+ C    C   CP      G++   I  D C+ CG CE  CPV AI  +
Sbjct: 1  MAYVISDSCVSCG--SCAGGCPAGAISLGDSHYEIDADTCLSCGACESACPVGAISAN 56


>gi|298528233|ref|ZP_07015637.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511885|gb|EFI35787.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 643

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+++C +C   +CV VCP +    GE    I   +C  CG+C  +CP  AI    EP  E
Sbjct: 474 VSQDCAVC--LNCVLVCPYNVPRPGEEKAVIDMSQCQACGICAGQCPAAAIDLGLEPRTE 531

Query: 65  L 65
           L
Sbjct: 532 L 532


>gi|77920137|ref|YP_357952.1| putative ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77546220|gb|ABA89782.1| putative ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 59

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + + +TE+CI C   D  + CP+    E  +   I  D C DCG C   CPVDAIK D
Sbjct: 4  LAHTITEDCINCGACD--DSCPLGAIEEKGDARVIDADACTDCGACVDSCPVDAIKAD 59


>gi|212637704|ref|YP_002314229.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559188|gb|ACJ31642.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 195

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|148655927|ref|YP_001276132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus sp. RS-1]
 gi|148568037|gb|ABQ90182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus
           sp. RS-1]
          Length = 565

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C +  CV +CPV   Y+  +  +   P  CI C  C   CP DAI  D E
Sbjct: 52  YFQVTRCNHCANPPCVRICPVTAMYQRSDGIVEFDPRVCIGCKACLQACPYDAIYIDPE 110


>gi|329913103|ref|ZP_08275888.1| Formate dehydrogenase-O, iron-sulfur subunit [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545421|gb|EGF30633.1| Formate dehydrogenase-O, iron-sulfur subunit [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  +     L  
Sbjct: 56  CMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCAYACPFGAPQFPSNGVFGLRG 115

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           K++            K        + DG K+++EKY
Sbjct: 116 KMD------------KCTFCAGGPEEDGSKEEFEKY 139


>gi|149915678|ref|ZP_01904204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           AzwK-3b]
 gi|149810570|gb|EDM70413.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           AzwK-3b]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|33601105|ref|NP_888665.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           bronchiseptica RB50]
 gi|33575540|emb|CAE32618.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           bronchiseptica RB50]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  +E   
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGAPQFPSEGAF 110

Query: 64  ELWLKIN 70
            +  K++
Sbjct: 111 GVRGKMD 117


>gi|33596552|ref|NP_884195.1| formate dehydrogenase iron-sulfur subunit [Bordetella parapertussis
           12822]
 gi|33566321|emb|CAE37234.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           parapertussis]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  +E   
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGAPQFPSEGAF 110

Query: 64  ELWLKIN 70
            +  K++
Sbjct: 111 GVRGKMD 117


>gi|315925900|ref|ZP_07922105.1| ferredoxin [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620721|gb|EFV00697.1| ferredoxin [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +++ CI C    C + CP +   EG  ++ I  D CIDCG C  +CP+ AI P
Sbjct: 1  MAYTISDECISCGA--CADQCPTEAISEGSPYV-IDADACIDCGSCADQCPMGAIAP 54


>gi|262276170|ref|ZP_06053979.1| formate dehydrogenase-O iron-sulfur subunit [Grimontia hollisae CIP
           101886]
 gi|262219978|gb|EEY71294.1| formate dehydrogenase-O iron-sulfur subunit [Grimontia hollisae CIP
           101886]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCLFACPFGA 103


>gi|163749870|ref|ZP_02157115.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
 gi|161330384|gb|EDQ01363.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ L +H  D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPANCFYQTEDGLTLHNKDTCIGCGYCLYACPFGA 100


>gi|114561246|ref|YP_748759.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332539|gb|ABI69921.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|261878703|ref|ZP_06005130.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334710|gb|EFA45496.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ E+C+ C    C++ CPV    EG+ + +I PDEC +CG C   CP +AI 
Sbjct: 1  MAYVINEDCVACGT--CIDECPVSAISEGDIY-SIDPDECTECGSCAAVCPQEAIS 53


>gi|169824821|ref|YP_001692432.1| ferredoxin [Finegoldia magna ATCC 29328]
 gi|297587204|ref|ZP_06945849.1| ferredoxin [Finegoldia magna ATCC 53516]
 gi|302379640|ref|ZP_07268125.1| ferredoxin [Finegoldia magna ACS-171-V-Col3]
 gi|303234546|ref|ZP_07321183.1| ferredoxin [Finegoldia magna BVS033A4]
 gi|167831626|dbj|BAG08542.1| ferredoxin [Finegoldia magna ATCC 29328]
 gi|297575185|gb|EFH93904.1| ferredoxin [Finegoldia magna ATCC 53516]
 gi|302312547|gb|EFK94543.1| ferredoxin [Finegoldia magna ACS-171-V-Col3]
 gi|302494380|gb|EFL54149.1| ferredoxin [Finegoldia magna BVS033A4]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y ++++CI C    C   CPVDC  EG+ +  I  D CIDCG C   CPVDA
Sbjct: 1  MAYKISDDCIACGQ--CKPECPVDCISEGDIY-TIDQDACIDCGSCADVCPVDA 51


>gi|309389842|gb|ADO77722.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+VT+ C  C    CV  CPVD     +N   I   +CI+CG C   C  +AI  +  P
Sbjct: 111 YIVTDACRNCVAHKCVNACPVDAIVIIQNKAYIDQHKCIECGKCAKTCSYNAILENQRP 169


>gi|119094142|gb|ABL60972.1| anaerobic dehydrogenase iron-sulfur subunit [uncultured marine
           bacterium HF10_19P19]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCPVDCFY+ +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCTAVCPVDCFYQTDQGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|121595757|ref|YP_987653.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222111960|ref|YP_002554224.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120607837|gb|ABM43577.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221731404|gb|ACM34224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTEEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|77918293|ref|YP_356108.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77544376|gb|ABA87938.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 57

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          T+ +TE+CI C    C +VCPVD   E      +    C DCG C+  CPVDAIK D
Sbjct: 3  THYITEDCINCGA--CADVCPVDAISEKGELHIVDQPTCTDCGACDEVCPVDAIKWD 57


>gi|268680689|ref|YP_003305120.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618720|gb|ACZ13085.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY  E+ + +H  E CI CG C   CP  A
Sbjct: 56  ISIACMHCSDAPCSQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 106


>gi|119899770|ref|YP_934983.1| formate dehydrogenase iron-sulfur subunit [Azoarcus sp. BH72]
 gi|119672183|emb|CAL96097.1| probable formate dehydrogenase iron-sulfur subunit [Azoarcus sp.
           BH72]
          Length = 202

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYKAEGGVVLHDKDLCIGCGYCFFACPFGA 101


>gi|95930556|ref|ZP_01313291.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133391|gb|EAT15055.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T +CI C+   CVE   CP     E      +  D CI CG C P CPV AIK
Sbjct: 552 ITSDCIGCRR--CVEAFECPALSMDEATTMAVLDQDRCIGCGTCIPVCPVHAIK 603


>gi|149176045|ref|ZP_01854662.1| ferredoxin [Planctomyces maris DSM 8797]
 gi|148845199|gb|EDL59545.1| ferredoxin [Planctomyces maris DSM 8797]
          Length = 59

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKESL 87
           L I P+ECIDC  C  ECPV+AI  + D       +++IN+E A + P IT +K  L
Sbjct: 1  MLYIDPEECIDCDACRTECPVNAIFYEDDVPDQWREYIQINAEMAAKTPPITERKAPL 58


>gi|126734222|ref|ZP_01749969.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717088|gb|EBA13952.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|256004045|ref|ZP_05429030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 2360]
 gi|281419118|ref|ZP_06250135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum JW20]
 gi|255991968|gb|EEU02065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 2360]
 gi|281407267|gb|EFB37528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum JW20]
 gi|316941711|gb|ADU75745.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 1313]
          Length = 56

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA
Sbjct: 1  MAYFITDACISCGA--CESECPVSCISPGDSVYVIDADACIECGACANVCPVDA 52


>gi|293401574|ref|ZP_06645717.1| hypothetical protein
 gi|291305212|gb|EFE46458.1| [Fe] hydrogenase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 482

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 17/101 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK---------P 57
           N I+     C++ CPVD    GE+ LA I  ++CI+CG C+ +CP  AI+          
Sbjct: 148 NAIVETQRPCMKSCPVDAISMGESGLAEIDEEKCINCGACQAKCPFGAIEDMSWMVDVIE 207

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
           + + G E++         Q+ N T     LP    M+G++Q
Sbjct: 208 ELKKGTEMYAIFAPAMQGQFDNAT-----LPQV--MEGIRQ 241



 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C+  C  D  + G +   I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGNDHAFIDYDKCKECGACKNACPFNAIVETQRP 156


>gi|322419467|ref|YP_004198690.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Geobacter sp. M18]
 gi|320125854|gb|ADW13414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M18]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +++++ CI C   D  + CPV+   E  +   I  D CIDCG C   CPV AI P
Sbjct: 1  MAHIISDECINCGACD--DSCPVNAISEAGSKRTIAADTCIDCGACVDTCPVSAIAP 55


>gi|306820590|ref|ZP_07454220.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551371|gb|EFM39332.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ +NCI C    C   CPV    +G+    I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIHDNCISCGA--CEPECPVGAISQGDTQYIIDASACIDCGACASVCPVDAPQPE 56


>gi|119996|sp|P00200|FER_CLOTS RecName: Full=Ferredoxin
          Length = 55

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +++T+ CI C    C   CPV+  +EG     +  D CIDCG CE  CP  A+K +
Sbjct: 1  AHIITDECISCGA--CAAECPVEAIHEGTGKYEVDADTCIDCGACEAVCPTGAVKAE 55


>gi|299143653|ref|ZP_07036733.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518138|gb|EFI41877.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++CI C    C   CPVDC  EG+ + +I+ D+CIDCG C   CP  A  P+
Sbjct: 1  MAYQINDSCIACGA--CKPECPVDCISEGDIY-SINADQCIDCGSCAAVCPTGAPNPE 55


>gi|224536879|ref|ZP_03677418.1| hypothetical protein BACCELL_01755 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521503|gb|EEF90608.1| hypothetical protein BACCELL_01755 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG+ + AI P+ C DCG C   CP +AI P
Sbjct: 1  MAYVINDSCVACGT--CIDECPVGAISEGDIY-AIDPETCTDCGTCADVCPSEAIHP 54


>gi|198276095|ref|ZP_03208626.1| hypothetical protein BACPLE_02282 [Bacteroides plebeius DSM
          17135]
 gi|224026834|ref|ZP_03645200.1| hypothetical protein BACCOPRO_03591 [Bacteroides coprophilus DSM
          18228]
 gi|198270907|gb|EDY95177.1| hypothetical protein BACPLE_02282 [Bacteroides plebeius DSM
          17135]
 gi|224020070|gb|EEF78068.1| hypothetical protein BACCOPRO_03591 [Bacteroides coprophilus DSM
          18228]
          Length = 55

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV    EG+ + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACGT--CIDECPVGAISEGDKY-SINPDACTECGTCADVCPSEAIH 53


>gi|125974593|ref|YP_001038503.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum
          ATCC 27405]
 gi|125714818|gb|ABN53310.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
          thermocellum ATCC 27405]
          Length = 60

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA
Sbjct: 5  MAYFITDACISCGA--CESECPVSCISPGDSVYVIDADACIECGACANVCPVDA 56


>gi|283796651|ref|ZP_06345804.1| conserved domain protein [Clostridium sp. M62/1]
 gi|291076074|gb|EFE13438.1| conserved domain protein [Clostridium sp. M62/1]
 gi|295092473|emb|CBK78580.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
          [Clostridium cf. saccharolyticum K10]
 gi|295115344|emb|CBL36191.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
          [butyrate-producing bacterium SM4/1]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+T+ C+ C    C   CPV    EG+    I    CIDCG C   CP  AI+
Sbjct: 1  MAYVITDTCVSCGA--CAGGCPVGAISEGDGKYEIDAAACIDCGACAGTCPTGAIE 54


>gi|260430249|ref|ZP_05784223.1| formate dehydrogenase iron-sulfur subunit [Citreicella sp. SE45]
 gi|260418721|gb|EEX11977.1| formate dehydrogenase iron-sulfur subunit [Citreicella sp. SE45]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+ +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDEGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|90418456|ref|ZP_01226368.1| formate dehydrogenase, iron-sulfur subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338128|gb|EAS51779.1| formate dehydrogenase, iron-sulfur subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 198

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|331002353|ref|ZP_08325871.1| ferredoxin [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410169|gb|EGG89603.1| ferredoxin [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 55

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    +G+    I  D CIDCG C   CP DAI
Sbjct: 1  MAYTITDKCVSCGT--CEGECPVSAISQGDTQFNIDADACIDCGTCASVCPTDAI 53


>gi|309389388|gb|ADO77268.1| putative iron-sulfur protein [Halanaerobium praevalens DSM 2228]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E+CI C    C++ CP+D   +  N + I  D C+ CGVC   CP  A+
Sbjct: 290 ESCINCDK--CLDACPIDAITKNNNQIKIDQDICLGCGVCVRSCPTKAL 336


>gi|303243458|ref|ZP_07329800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486019|gb|EFL48941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C++  C+ +CPV+  Y  EN   ++ + CI CG+CE  CP+ AI  + +   +  L 
Sbjct: 42  CMQCENAPCMNICPVNAIYLKENIPIVNKERCIGCGMCEIACPIGAIFIEEKVAHKCTLC 101

Query: 69  INSEYAT 75
           ++++  T
Sbjct: 102 LDTDRIT 108


>gi|90418569|ref|ZP_01226481.1| formate dehydrogenase, iron-sulfur binding subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338241|gb|EAS51892.1| formate dehydrogenase, iron-sulfur binding subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 198

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPVDCF+  E+ + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFFTTEDGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|310828126|ref|YP_003960483.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
 gi|308739860|gb|ADO37520.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
          Length = 506

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++VT+NC  C    CV VCPV+  Y  +    I  ++C+ CG C   CP +AI
Sbjct: 113 AFMVTDNCRGCLAHPCVSVCPVNAVYMKDGKSHIDKEKCVRCGRCREACPYEAI 166


>gi|266619566|ref|ZP_06112501.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288868851|gb|EFD01150.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ C+ C    C   CPV    EGE    I  D CI CG C   CPV AI 
Sbjct: 1  MAYVISDACVSCGT--CEGECPVSAISEGEGQYVIDADTCISCGTCAGACPVGAIS 54


>gi|228471147|ref|ZP_04055966.1| conserved domain protein [Porphyromonas uenonis 60-3]
 gi|228307087|gb|EEK16161.1| conserved domain protein [Porphyromonas uenonis 60-3]
          Length = 54

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+T++C+ C    C++ CPV    EG+ + +I  D CIDCG C   CP  AI+
Sbjct: 1  MAHVITDSCVACGT--CIDECPVGAISEGDIY-SIDADTCIDCGACAAACPSGAIE 53


>gi|322371908|ref|ZP_08046450.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548330|gb|EFW90002.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
          Length = 594

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C  + C +VCPV   +E E+  +   P+ CI C  C   CP DA+  D E
Sbjct: 61  CNHCDDSPCTDVCPVTALWEREDGIVDFDPERCIGCKACMQGCPYDALYIDPE 113


>gi|333029771|ref|ZP_08457832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides coprosuis DSM 18011]
 gi|332740368|gb|EGJ70850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides coprosuis DSM 18011]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG+ + +I  D C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIACGT--CIDECPVEAISEGDIY-SIDADICTDCGTCADVCPSEAIHP 54


>gi|255659932|ref|ZP_05405341.1| conserved domain protein [Mitsuokella multacida DSM 20544]
 gi|260847803|gb|EEX67810.1| conserved domain protein [Mitsuokella multacida DSM 20544]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y + ++CI C    C   CPV+   EG     I  D+C++CG C   CPV AI+
Sbjct: 1  MAYKINDDCISCG--SCAATCPVEAISEGAEHYEIDADKCVECGACAAGCPVSAIE 54


>gi|83311771|ref|YP_422035.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82946612|dbj|BAE51476.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 55  CMHCSDAPCMAVCPVDCFYQTGDGIVLHNKDLCIGCGYCFYACPFGA 101


>gi|51894235|ref|YP_076926.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857924|dbj|BAD42082.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  +   +C+ C    CV  CP D    G+   + ++ D CI CG CE  CP D I  D
Sbjct: 84  MWLMQKHSCMHCTDAGCVTACPTDALQYGDYGLVTLNQDACIGCGYCEAACPFDCIHVD 142


>gi|157963947|ref|YP_001503981.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848947|gb|ABV89446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  E+ + +H  E CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKETCIGCGYCFYACPFGA 103


>gi|85710648|ref|ZP_01041712.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
 gi|85687826|gb|EAQ27831.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
          Length = 808

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK----PDT 59
           V  +C  C+H  C+  CP +    G +  ++I+ + CI CG C+  CP   I+    P  
Sbjct: 669 VPTSCRHCEHPHCMADCPPNAIQRGPDGEVSINAETCIGCGNCKSNCPYGVIRMDPVPPK 728

Query: 60  EPGLELWLKINS-----EYATQW------PNITTKKESLPSAAKMDG 95
           +P L  WL   S     E +  W      P++  K       A +DG
Sbjct: 729 KPSLLSWLFFGSGPGPGEASYSWRKSHGDPDLAKKAIKCDMCAGIDG 775


>gi|325300099|ref|YP_004260016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides salanitronis DSM 18170]
 gi|324319652|gb|ADY37543.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides salanitronis DSM 18170]
          Length = 55

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV    EG+ + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACGT--CIDECPVGAISEGDKY-SINPDMCTECGTCADVCPSEAIH 53


>gi|86140241|ref|ZP_01058802.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. MED193]
 gi|85823044|gb|EAQ43258.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. MED193]
          Length = 197

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 55  CMHCSDAPCMAVCPVDCFYQTADGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|302390835|ref|YP_003826655.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
 gi|302202912|gb|ADL11590.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
          Length = 55

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + VT+ C+ C+   C++ CP D   EG +  +I  DECI+CG+C  ECP +AI
Sbjct: 1  MAFKVTDECVACET--CLDECPEDAIEEG-DIYSIDEDECIECGICADECPTEAI 52


>gi|300728400|ref|ZP_07061762.1| conserved domain protein [Prevotella bryantii B14]
 gi|299774319|gb|EFI70949.1| conserved domain protein [Prevotella bryantii B14]
          Length = 56

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++CI C    C++ CPV    EGE + +I PD C +CG C   CP +AI 
Sbjct: 1  MAYVIGDDCIACGT--CIDECPVGAISEGEKY-SIDPDACTECGTCASVCPNEAIA 53


>gi|317502269|ref|ZP_07960441.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089012|ref|ZP_08337919.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896330|gb|EFV18429.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406464|gb|EGG85977.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 56

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSCGS--CEAECPVGAISEGDGKYEIDADACVDCGACEAACPTGAISAE 56


>gi|239817031|ref|YP_002945941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803608|gb|ACS20675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV CFY  E  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVQCFYRTEEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|300853352|ref|YP_003778336.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300433467|gb|ADK13234.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 57

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +TE+C+ C    C   CP D   +G++   I P++CI+CG C   CPV A
Sbjct: 1  MAYKITEDCVSCGS--CASECPADAISQGDSQFVIDPEKCIECGNCANVCPVGA 52


>gi|253581030|ref|ZP_04858291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847693|gb|EES75662.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 57

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+++ C+ C    C   CP +   +G+    I  D C+DCG C   CP +AI P
Sbjct: 1  MAYVISDECVSCG--TCESECPAEAISQGDEHYVIDADACLDCGTCADACPTEAIHP 55


>gi|323485418|ref|ZP_08090766.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
          WAL-14163]
 gi|323694183|ref|ZP_08108360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium symbiosum WAL-14673]
 gi|323401281|gb|EGA93631.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
          WAL-14163]
 gi|323501760|gb|EGB17645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium symbiosum WAL-14673]
          Length = 56

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+T++C+ C    C   CPV    +G+    I  + CIDCG C   CP  AI+
Sbjct: 1  MAYVITDSCVSCGA--CAGDCPVGAISQGDGKYEIDANTCIDCGSCAGSCPTGAIE 54


>gi|167761785|ref|ZP_02433912.1| hypothetical protein BACSTE_00125 [Bacteroides stercoris ATCC
          43183]
 gi|167700291|gb|EDS16870.1| hypothetical protein BACSTE_00125 [Bacteroides stercoris ATCC
          43183]
          Length = 70

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+ + +I P+ C +CG C   CP +AI P
Sbjct: 15 MAYVISDDCIACGT--CIDECPVGAISEGDIY-SIDPETCTECGTCADVCPSEAIHP 68


>gi|313897910|ref|ZP_07831451.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312957445|gb|EFR39072.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 482

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C+  C  D  + GE+   I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGEDHAFIDYDKCKECGACKNACPFNAIVETQRP 156



 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--EPGLE 64
           N I+     C++ CPVD    GE+ LA I   +CI+CG C+ +CP  AI+  +     +E
Sbjct: 148 NAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGACQVKCPFGAIEDMSWMLDVIE 207

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
           L  K    YA   P I  + +S      M  +++
Sbjct: 208 LLKKKEEVYAVFAPAIQGQFDSATLPQIMQAMRE 241


>gi|121535881|ref|ZP_01667679.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305546|gb|EAX46490.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 368

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C  VCP +     +   +I  D+CI CG C   CPV A+  D    L ++L+
Sbjct: 195 CIGC--AKCAAVCPENAITVSDKKASIAVDKCIGCGECLTVCPVKAVGMDWATDLAVFLE 252

Query: 69  INSEYA 74
             +EYA
Sbjct: 253 RMTEYA 258


>gi|150377582|ref|YP_001314177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150032129|gb|ABR64244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 198

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPVDCFY   + + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTADAVVLHSKDLCIGCGYCFYACPFGA 101


>gi|21228665|ref|NP_634587.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20907167|gb|AAM32259.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 369

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VV E CI C   +CVE+CPV       +   I+P  CI CG C   CP +AI  + E  
Sbjct: 190 HVVEEKCIGC--GNCVEICPVGAASLEGDVSRINPGVCISCGQCMEVCPENAIDLNWEQD 247

Query: 63  LELWLKINSEYA 74
           +  +L+  +EYA
Sbjct: 248 IPEFLECMTEYA 259


>gi|309776276|ref|ZP_07671265.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915956|gb|EFP61707.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 482

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C+  C  D  + GE+   I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGEDHAFIDYDKCKECGACKNACPFNAIVETQRP 156



 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL- 65
           N I+     C++ CPVD    GE+ LA I   +CI+CG C+ +CP  AI+ D    L++ 
Sbjct: 148 NAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGACQAKCPFGAIE-DMSWMLDVI 206

Query: 66  -WLKINSE-YATQWPNITTKKESLPSAAKMDGVKQ 98
             LK   E YA   P I  + +S      M  +++
Sbjct: 207 ELLKSGEEVYAVFAPAIQGQFDSATLPQIMQAMRE 241


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV+ E+C+ C    C + CP     E      I PD C  CG C   CPV AI  +   G
Sbjct: 561 YVIGEDCVQCGW--CRDTCPHGAILEKREGFYIEPDLCQRCGACLGVCPVGAIYLEAAGG 618

Query: 63  LELWLK 68
            + W K
Sbjct: 619 EKPWSK 624


>gi|304382205|ref|ZP_07364713.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336670|gb|EFM02898.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 55

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +C+ C    C++ CPV    EGE + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCVACGT--CIDECPVSAISEGEIY-SINPDACTECGACAAVCPSEAIS 53


>gi|168702048|ref|ZP_02734325.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 917

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++V  +C  C+   C+E CPVD  +  G +   +  + CI CG+CE  CP  AI
Sbjct: 796 FLVATSCRSCQKPYCMEGCPVDAIHRRGAHLEVVIENHCIGCGLCERNCPYGAI 849


>gi|114706723|ref|ZP_01439623.1| formate dehydrogenase, iron-sulfur subunit, putative [Fulvimarina
          pelagi HTCC2506]
 gi|114537671|gb|EAU40795.1| formate dehydrogenase, iron-sulfur subunit, putative [Fulvimarina
          pelagi HTCC2506]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A
Sbjct: 48 ISVACMHCSDAPCMAVCPVDCFYQTADGVVLHSKDLCIGCGYCFYACPFGA 98


>gi|288869832|ref|ZP_06111989.2| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
 gi|288869437|gb|EFD01736.1| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
          Length = 491

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C   C       G +   I PD+C +CG C   CP +AI   T P
Sbjct: 102 YVVTDNCQKCMGKACQNSCNFGAISMGHDRAYIDPDKCKECGKCSQACPYNAIADLTRP 160


>gi|117927911|ref|YP_872462.1| putative glutamate synthase (NADPH) small subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648374|gb|ABK52476.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 543

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           NC  C   +C  VCP     + E+    AI  D C  CG+C  ECPV AI+   EPG E+
Sbjct: 484 NCFQCD--NCYAVCPDAAVLKVESGHGYAIDLDYCKGCGLCVAECPVGAIRTVPEPGTEV 541


>gi|313904957|ref|ZP_07838328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
 gi|313470214|gb|EFR65545.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
          Length = 56

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M  V++++C+ C    C   CPV    +G+    I  D C+DCG CE  CP  AI 
Sbjct: 1  MARVISDDCVSCGT--CEGECPVGAISQGDGKFVIDADSCVDCGACEAACPTGAIS 54


>gi|269798297|ref|YP_003312197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
 gi|282850535|ref|ZP_06259914.1| ferredoxin [Veillonella parvula ATCC 17745]
 gi|294792160|ref|ZP_06757308.1| conserved domain protein [Veillonella sp. 6_1_27]
 gi|294794025|ref|ZP_06759162.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|269094926|gb|ACZ24917.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
 gi|282580028|gb|EFB85432.1| ferredoxin [Veillonella parvula ATCC 17745]
 gi|294455595|gb|EFG23967.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|294457390|gb|EFG25752.1| conserved domain protein [Veillonella sp. 6_1_27]
          Length = 54

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV C  EGE    I  D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKCGS--CASVCPVSCITEGETKYEIG-DACIDCGSCESVCPVSVISAE 54


>gi|119713742|gb|ABL97791.1| ferredoxin [uncultured marine bacterium HF10_29C11]
          Length = 63

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWP 78
          + +L I PDECIDCG C PECPV+AI  DT+     E W+  N   +   P
Sbjct: 2  DTYLIIDPDECIDCGACVPECPVEAIFADTDVPDEEEEWIDKNETESADAP 52


>gi|163749866|ref|ZP_02157111.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
 gi|161330380|gb|EDQ01359.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
          Length = 196

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCFY  E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPADCFYRTEDGIVLHNKDTCIGCGYCLYACPFGA 103


>gi|219847452|ref|YP_002461885.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219541711|gb|ACL23449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 559

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV +CPV   Y+  +  +   P  CI C  C   CP DAI  D E
Sbjct: 58  CNHCANPPCVRICPVTAMYQRTDGIVEFDPKVCIGCKACMQACPYDAIYIDPE 110


>gi|110634791|ref|YP_674999.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285775|gb|ABG63834.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPVDCFY   + + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTADAVVLHSKDLCIGCGYCFYACPFGA 101


>gi|114049282|ref|YP_739832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117922353|ref|YP_871545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113890724|gb|ABI44775.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117614685|gb|ABK50139.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTEDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|299143936|ref|ZP_07037016.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518421|gb|EFI42160.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 498

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY VT+NC  C    C  VCPV+      N   I   +CI CG C+  CP +AI
Sbjct: 112 TYYVTDNCRKCMAHPCTNVCPVNAVTIERNRAHIDTTKCIKCGRCKETCPYNAI 165


>gi|145591183|ref|YP_001153185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282951|gb|ABP50533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 284

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C    C   CPV      GE  + I+ DECI CG CE  CP D  K  ++
Sbjct: 94  NCLHCVAAPCARACPVGAIKVTGEGAVVINRDECIGCGYCETACPYDVPKRGSD 147


>gi|315925580|ref|ZP_07921790.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621121|gb|EFV01092.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 493

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT+NC  C    C+  C     + GE    I  ++C +CG+C   CP +AI     P
Sbjct: 92  SYVVTDNCQNCLGKACLSACRFGAIHPGEKRSRIDANKCRECGMCATACPYNAIAHLVRP 151


>gi|157831039|pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
          Model At 1.8 Angstroms Resolution
          Length = 55

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV+ E CI C    C   CPVD   +G +   I  D CIDCG C   CPVDA
Sbjct: 1  AYVINEACISCGA--CEPECPVDAISQGGSRYVIDADTCIDCGACAGVCPVDA 51


>gi|325280763|ref|YP_004253305.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
 gi|324312572|gb|ADY33125.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C   CPV     G +   I P+ C DCG C   CPV+AIK
Sbjct: 1  MAYVISDDCISCGT--CEGECPVGAISMGADHYEIDPNACTDCGTCAGVCPVEAIK 54


>gi|294788766|ref|ZP_06754007.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483248|gb|EFG30934.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+    CI C  T C+  CPVD       F+  +  DEC  CG+C   CPVD I  D 
Sbjct: 81  LAYIDESVCIGC--TACIRACPVDAIMGASKFMHTVLTDECTGCGLCVAPCPVDCI--DL 136

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSA-AKMDGVKQKYEK 102
               + +L  N   A+Q P++  + ++   A A+ D   Q+ ++
Sbjct: 137 IDVKDEFLPRNHYLASQ-PSLAPRSQAAEHAKARYDNHTQRKQR 179


>gi|150388648|ref|YP_001318697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149948510|gb|ABR47038.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + E+CI C    C   CPVD    G++   I  D CIDCG C   CP DA +P
Sbjct: 1  MAYKINESCINCGA--CEPECPVDVITAGDDIYVIEEDGCIDCGACANVCPTDAPQP 55


>gi|118444967|ref|YP_878935.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
 gi|118135423|gb|ABK62467.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
          Length = 494

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +TE C  C    C+EVCPV    +      I+ D C +CG+C+  CP +AI     P
Sbjct: 103 YTITEACRGCVQHKCMEVCPVKAITKINGRAYINQDVCRECGMCKQVCPYNAISEVMRP 161



 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 17  CVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C +VCP +  C    +    I+ +ECI CG C   CP  AI  K    P +E        
Sbjct: 162 CKKVCPTEAICISPQDRRAEINDEECISCGACMKACPFGAISDKSYIVPVVEAIKNNKKV 221

Query: 73  YATQWPNITTK 83
           YA   P IT +
Sbjct: 222 YALVAPAITGQ 232


>gi|120600656|ref|YP_965230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291443|ref|YP_001181867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560749|gb|ABM26676.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563133|gb|ABP74068.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428326|gb|ADV56400.1| formate dehydrogenase, FeS subunit, FdhB [Shewanella putrefaciens
           200]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|193213841|ref|YP_001995040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193087318|gb|ACF12593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 547

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C  C +  CV +CPV   Y+ E+  +    + CI C  C   CP +AI  D + 
Sbjct: 51  YFQVTRCNHCANPPCVRICPVTAMYQREDGIVEFDKNVCIGCKACTQACPYNAIHVDPDS 110

Query: 62  G 62
           G
Sbjct: 111 G 111


>gi|163858981|ref|YP_001633279.1| formate dehydrogenase, iron-sulfur subunit [Bordetella petrii DSM
           12804]
 gi|163262709|emb|CAP45012.1| Formate dehydrogenase, iron-sulfur subunit [Bordetella petrii]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGA 101


>gi|113972052|ref|YP_735845.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886736|gb|ABI40788.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|149927499|ref|ZP_01915753.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
 gi|149823772|gb|EDM82998.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
          Length = 820

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-----PDT 59
           +  +C  C+   C++ CP D     E    +  D CI CG C   CP +AI+     P  
Sbjct: 690 LAHSCRHCEQPHCMKDCPPDAIRRNEKGEVMIADTCIGCGNCAKNCPYNAIELRVKPPPR 749

Query: 60  EPGLELWLKINS 71
           + GL  WL   S
Sbjct: 750 KTGLLSWLLFGS 761


>gi|291526378|emb|CBK91965.1| 4Fe-4S binding domain [Eubacterium rectale DSM 17629]
 gi|291526823|emb|CBK92409.1| 4Fe-4S binding domain [Eubacterium rectale M104/1]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++C+ C    C   CPV     G++   I  D C+DCG C   CP  AI 
Sbjct: 1  MAYVISDSCVSCGT--CAGECPVGAISAGDSQYVIDADSCLDCGTCAGVCPTGAIS 54


>gi|169335612|ref|ZP_02862805.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258350|gb|EDS72316.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+T+ CI C    C   CPV    EG+    I    CIDCG C   CP  A +P+
Sbjct: 1  MAHVITDECISCGA--CAGECPVGAISEGDGKYEIDAATCIDCGACAGACPTGAAQPE 56


>gi|163848741|ref|YP_001636785.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526688|ref|YP_002571159.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163670030|gb|ABY36396.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450567|gb|ACM54833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           sp. Y-400-fl]
          Length = 559

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV +CPV   Y+  +  +   P  CI C  C   CP DAI  D E
Sbjct: 58  CNHCANPPCVRICPVTAMYQRTDGIVEFDPKVCIGCKACLQACPYDAIYIDPE 110


>gi|301064440|ref|ZP_07204859.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441450|gb|EFK05796.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 235

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  V TE CI C+   C+E C ++     ++   I+ D CI CG+C   CP DA+  +  
Sbjct: 138 VARVDTETCIGCE--TCLERCQMEALRMEDDHAVINRDRCIGCGLCVSTCPSDALHMERR 195

Query: 61  PG 62
           PG
Sbjct: 196 PG 197


>gi|187934556|ref|YP_001884438.1| hypothetical protein CLL_A0202 [Clostridium botulinum B str.
          Eklund 17B]
 gi|188590020|ref|YP_001919636.1| hypothetical protein CLH_0200 [Clostridium botulinum E3 str.
          Alaska E43]
 gi|251778001|ref|ZP_04820921.1| ferredoxin, 4Fe-4S [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|187722709|gb|ACD23930.1| ferredoxin, 4Fe-4S [Clostridium botulinum B str. Eklund 17B]
 gi|188500301|gb|ACD53437.1| ferredoxin, 4Fe-4S [Clostridium botulinum E3 str. Alaska E43]
 gi|243082316|gb|EES48206.1| ferredoxin, 4Fe-4S [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 56

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M +V+ ++C+ C    C   CPVD   +G+ +  I  D CIDCG C   CPV A
Sbjct: 1  MAFVINDSCVSCGA--CAGECPVDAISQGDAYYVIDADTCIDCGNCANVCPVGA 52


>gi|24375987|ref|NP_720030.1| formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
 gi|24350986|gb|AAN57474.1|AE015883_5 formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|167630565|ref|YP_001681064.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
          [Heliobacterium modesticaldum Ice1]
 gi|167593305|gb|ABZ85053.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
          [Heliobacterium modesticaldum Ice1]
          Length = 60

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+++ ++C+ C    C   CP +   EG +   I  D+CIDCG C   CPV A +P+ +
Sbjct: 1  MTHIINDDCVNCGA--CAPECPTNAISEGPDKYIIDADKCIDCGACADVCPVGAPRPEGD 58


>gi|113972048|ref|YP_735841.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|114049278|ref|YP_739828.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117922349|ref|YP_871541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113886732|gb|ABI40784.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
 gi|113890720|gb|ABI44771.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117614681|gb|ABK50135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|108804450|ref|YP_644387.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765693|gb|ABG04575.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 531

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CVE CPV   Y  E+  +  + D CI C  C   CP DA+  D E
Sbjct: 58  CNHCEDAPCVEACPVTALYVREDGIVDFNWDRCIGCKACTQACPYDALYIDPE 110


>gi|268679442|ref|YP_003303873.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617473|gb|ACZ11838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +  +  C+ C    C +VCPVDCFY  E+ + +H  E CI CG C   CP  A
Sbjct: 52  FSTSVACMHCTDAPCEQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 104


>gi|297538314|ref|YP_003674083.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
 gi|297257661|gb|ADI29506.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
          Length = 833

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  +C  C+H  C++ CP D  +   +      D CI CG C+  CP D I+
Sbjct: 693 VPTSCRHCEHPHCMKDCPPDAIHRAPHGEVYIDDSCIGCGNCQQNCPYDVIQ 744


>gi|114320443|ref|YP_742126.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226837|gb|ABI56636.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 196

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
            V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 50  AVSVACMHCTDAPCAAVCPVDCFYTTDDGVVLHDKDLCIGCGYCFYACPFGA 101


>gi|157963943|ref|YP_001503977.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848943|gb|ABV89442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|304439876|ref|ZP_07399770.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371615|gb|EFM25227.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  VT+NC  C    C  VCPV+    G++   I  D+C+ CG C+  CP  AI
Sbjct: 112 TIYVTDNCRRCMAHPCTNVCPVNAVKIGKHRAEIDHDKCVKCGRCKDTCPYHAI 165


>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
 gi|164604201|gb|EDQ97666.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +TE CI C    C  VCPVDC   E +    I  + C  CG C   CPVDAI
Sbjct: 221 ITEKCIGCG--ICQRVCPVDCIAGEKKEQRRIDYNRCTHCGRCLSACPVDAI 270


>gi|297564742|ref|YP_003683714.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849191|gb|ADH62206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 83

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP- 57
          M YV+ E CI  K   C  VCP +       +  L I PD CI  G+C   CPV AI P 
Sbjct: 1  MAYVIAEPCIGHKDLSCTVVCPTEAIGGRPSDPQLYIDPDLCIHYGLCASVCPVGAIFPQ 60

Query: 58 -DTEPGLELWLKINSEYATQW 77
           D       + + N +Y  +W
Sbjct: 61 EDLPEAWAAYAEGNRDYFRRW 81


>gi|225574426|ref|ZP_03783036.1| hypothetical protein RUMHYD_02495 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038354|gb|EEG48600.1| hypothetical protein RUMHYD_02495 [Blautia hydrogenotrophica DSM
          10507]
          Length = 57

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CP +   +GE+   I  D C+DCG C   CP +AI
Sbjct: 1  MAYVITDECVSCGT--CEAECPSEAISQGEDKYVIDADACVDCGTCADACPTEAI 53


>gi|167747433|ref|ZP_02419560.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|317471162|ref|ZP_07930533.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
 gi|167652795|gb|EDR96924.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|316901377|gb|EFV23320.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ CI C    C   CP     EG+    I  D C+DCG C   CP  AI 
Sbjct: 1  MAYVISDACISCGA--CEGTCPAGAISEGDGQYVIDADTCLDCGACADGCPTGAIS 54


>gi|315452565|ref|YP_004072835.1| putative formate dehydrogenase subunit B [Helicobacter felis ATCC
           49179]
 gi|315131617|emb|CBY82245.1| putative formate dehydrogenase subunit B [Helicobacter felis ATCC
           49179]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           I C+H TD  C +VCPVDCFY  E+ + +H  E CI CG C   CP  A
Sbjct: 66  IACQHCTDAPCAQVCPVDCFYIREDGIVLHNKETCIGCGYCLYACPFGA 114


>gi|189464155|ref|ZP_03012940.1| hypothetical protein BACINT_00491 [Bacteroides intestinalis DSM
          17393]
 gi|189437945|gb|EDV06930.1| hypothetical protein BACINT_00491 [Bacteroides intestinalis DSM
          17393]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG+ + +I P+ C DCG C   CP +AI P
Sbjct: 1  MAYVINDSCVACGT--CIDECPVGAISEGDIY-SIDPETCTDCGTCADVCPSEAIHP 54


>gi|167748586|ref|ZP_02420713.1| hypothetical protein ANACAC_03359 [Anaerostipes caccae DSM 14662]
 gi|167651900|gb|EDR96029.1| hypothetical protein ANACAC_03359 [Anaerostipes caccae DSM 14662]
          Length = 216

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++TE CI C    C +VCP  C  EG+ +  I  + C+ CG+C+ +CP  AI+
Sbjct: 162 FLITEACIGC--GTCRDVCPQQCISEGKPY-KIQQEHCLHCGLCKEQCPAGAIQ 212


>gi|297616864|ref|YP_003702023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297144701|gb|ADI01458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 58

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y +T+ CI C    CV+ CPV    EG++   I P+ C +CG C   CPV+A +P  E
Sbjct: 1  MAYYITDECISCGV--CVDECPVGAISEGDDKYVIDPELCTECGACAEICPVEAPQPAEE 58


>gi|218133263|ref|ZP_03462067.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992136|gb|EEC58140.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
          Length = 483

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+NC LC    C + C       G +   I P +C +CG C   CP +AI     P
Sbjct: 95  YTVTDNCRLCMMKACKQACKFGAVSMGRDRAYIDPQKCRECGQCAKACPYNAIADLIRP 153


>gi|127510995|ref|YP_001092192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636290|gb|ABO21933.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 196

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|91786840|ref|YP_547792.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696065|gb|ABE42894.1| formate dehydrogenase beta subunit [Polaromonas sp. JS666]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|167622055|ref|YP_001672349.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352077|gb|ABZ74690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|167622051|ref|YP_001672345.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352073|gb|ABZ74686.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|24375991|ref|NP_720034.1| formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
 gi|24350990|gb|AAN57478.1|AE015883_9 formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|241765326|ref|ZP_04763303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364964|gb|EER59889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|300779506|ref|ZP_07089364.1| ferredoxin [Chryseobacterium gleum ATCC 35910]
 gi|300505016|gb|EFK36156.1| ferredoxin [Chryseobacterium gleum ATCC 35910]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 16/64 (25%)

Query: 15 TDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAI-------KPD 58
          + CV +CPV+     E +         L +  D CI CGVCEPECP +AI        P 
Sbjct: 29 SHCVNICPVEALTLVEGYVNEILNIRALYVQLDTCIMCGVCEPECPTEAIMLRLSGGSPG 88

Query: 59 TEPG 62
          T PG
Sbjct: 89 TTPG 92


>gi|291545260|emb|CBL18369.1| 4Fe-4S binding domain [Ruminococcus sp. 18P13]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M YV++++CI+C    C   CPV     G++   I  D CI+CG C   CPV A
Sbjct: 1  MAYVISDDCIMCGA--CESECPVSAISAGDSKYVIDADTCIECGACAGVCPVSA 52


>gi|326202931|ref|ZP_08192798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325987008|gb|EGD47837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +++ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA
Sbjct: 1  MAYSISDACISCGA--CESECPVSCITAGDSVYVIDEDTCIECGACANVCPVDA 52


>gi|7546410|pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
          Peptostreptococcus Asaccharolyticus
          Length = 55

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           YV+ ++CI C    C   CPV+C  EG +  AI  D CIDCG C   CPV A  P+
Sbjct: 1  AYVINDSCIACGA--CKPECPVNCIQEG-SIYAIDADSCIDCGSCASVCPVGAPNPE 54


>gi|296272511|ref|YP_003655142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096685|gb|ADG92635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 199

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           + Y ++  C+ C    C +VCPVDCFY  E+ + +H   +CI CG C   CP  A
Sbjct: 51  LEYSLSIACMHCTDAPCEKVCPVDCFYIREDGIVLHDKHKCIGCGYCLYACPFGA 105


>gi|317050998|ref|YP_004112114.1| hypothetical protein Selin_0818 [Desulfurispirillum indicum S5]
 gi|316946082|gb|ADU65558.1| hypothetical protein Selin_0818 [Desulfurispirillum indicum S5]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ C+ C    C   CPV    +G+    I  D CIDCG CE  CP  AI 
Sbjct: 1  MAYVISDACVNCGA--CEPECPVSAISQGDAIYVIDADTCIDCGACESVCPSGAIS 54


>gi|34733215|gb|AAQ81583.1| formate dehydrogenase subunit B [Sulfurospirillum multivorans]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           C+ C    C +VCPVDCFY  E+ + +H  E CI CG C   CP  A
Sbjct: 58  CMHCTDAPCEQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 104


>gi|27380587|ref|NP_772116.1| formate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum
           USDA 110]
 gi|27353752|dbj|BAC50741.1| formate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum
           USDA 110]
          Length = 198

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A +       
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADGVVLHSKDLCIGCGYCFYACPFGAPQ------- 103

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             + K+ +  +    +  T     P A   DG K++YEKY
Sbjct: 104 --YPKVGNFGSRGKMDKCTYCAGGPEA---DGSKEEYEKY 138


>gi|317470852|ref|ZP_07930233.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901679|gb|EFV23612.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 216

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++TE CI C    C +VCP  C  EG+ +  I  + C+ CG+C+ +CP  AI+
Sbjct: 162 FLITEACIGC--GTCRDVCPQQCISEGKPY-KIQQEHCLHCGLCKEQCPAGAIQ 212


>gi|254450340|ref|ZP_05063777.1| formate dehydrogenase Fe-S subunit [Octadecabacter antarcticus 238]
 gi|198264746|gb|EDY89016.1| formate dehydrogenase Fe-S subunit [Octadecabacter antarcticus 238]
          Length = 197

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+  + + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYQTADGVVLHSKDLCIGCGYCFYACPFGA 101


>gi|302562520|ref|ZP_07314862.1| ferredoxin-NADP reductase [Streptomyces griseoflavus Tu4000]
 gi|302480138|gb|EFL43231.1| ferredoxin-NADP reductase [Streptomyces griseoflavus Tu4000]
          Length = 519

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C         +     L I P  CIDCG C   CP 
Sbjct: 1  MAFAITQTC--CNDATCVSVCPVNCIHPTPEERAFGSTEMLHIDPRSCIDCGACADACPA 58

Query: 53 DAIKP--DTEPGLELWLKINSEY 73
          DAI P      G  ++ +IN+ Y
Sbjct: 59 DAILPVDRLSEGQRVYERINAAY 81


>gi|255067077|ref|ZP_05318932.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
 gi|255048673|gb|EET44137.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
          Length = 282

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CPVD       F+  +  DEC  CG+C P CPVD I
Sbjct: 80  CIGC--TACIRACPVDAIMGASKFMHTVISDECTGCGLCLPPCPVDCI 125


>gi|302336154|ref|YP_003801361.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
 gi|301319994|gb|ADK68481.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
          Length = 539

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C E+CP       +    I  D C+ CG+CE  CP  AI     P
Sbjct: 127 YTVTDQCQGCLAHPCREICPKQAISFVDKRAHIDQDLCVQCGMCERTCPYHAIHHHVRP 185


>gi|212637700|ref|YP_002314225.1| formate dehydrogenase, iron-sulfur subunit [Shewanella
           piezotolerans WP3]
 gi|212559184|gb|ACJ31638.1| Formate dehydrogenase, iron-sulfur subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISIACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|157377546|ref|YP_001476146.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319920|gb|ABV39018.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|119494011|ref|ZP_01624569.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106]
 gi|119452261|gb|EAW33459.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106]
          Length = 75

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV  CPV C ++G        ++  I  D CIDCG+C   CPV+ AI P+ +PGL+
Sbjct: 14 ADCVAACPVACIHDGPGKNAKGTDWYWIDFDTCIDCGICLTVCPVEGAILPEEQPGLQ 71


>gi|170729126|ref|YP_001763152.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814473|gb|ACA89057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|121603744|ref|YP_981073.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592713|gb|ABM36152.1| formate dehydrogenase beta subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDICIGCGYCSYACPFGA 101


>gi|261364486|ref|ZP_05977369.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567418|gb|EFC88978.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
          Length = 282

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CPVD       F+  +  DEC  CG+C P CPVD I
Sbjct: 80  CIGC--TACIRACPVDAIMGASKFMHTVISDECTGCGLCLPPCPVDCI 125


>gi|103485838|ref|YP_615399.1| cyclic nucleotide-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98975915|gb|ABF52066.1| cyclic nucleotide-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 811

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTE 60
           V  +C  C+H  C+  CP +  + G +        CI CG C   CP   I+    P  +
Sbjct: 673 VPTSCRHCEHPHCMADCPPNVIHRGPDGEVFMEPGCIGCGNCMRNCPYGVIRMEAAPPPK 732

Query: 61  PGLELWL 67
           PGL  WL
Sbjct: 733 PGLLSWL 739


>gi|218132108|ref|ZP_03460912.1| hypothetical protein BACEGG_03736 [Bacteroides eggerthii DSM
          20697]
 gi|317477110|ref|ZP_07936351.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|319900101|ref|YP_004159829.1| ferredoxin [Bacteroides helcogenes P 36-108]
 gi|329956776|ref|ZP_08297345.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|329964134|ref|ZP_08301300.1| ferredoxin [Bacteroides fluxus YIT 12057]
 gi|217985758|gb|EEC52099.1| hypothetical protein BACEGG_03736 [Bacteroides eggerthii DSM
          20697]
 gi|316906653|gb|EFV28366.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|319415132|gb|ADV42243.1| ferredoxin [Bacteroides helcogenes P 36-108]
 gi|328523815|gb|EGF50902.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|328525654|gb|EGF52683.1| ferredoxin [Bacteroides fluxus YIT 12057]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+ + +I P+ C +CG C   CP +AI P
Sbjct: 1  MAYVISDDCIACGT--CIDECPVGAISEGDIY-SIDPETCTECGTCADVCPSEAIHP 54


>gi|167630654|ref|YP_001681153.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
 gi|167593394|gb|ABZ85142.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
          Length = 484

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+E CPV    +      I+ ++CI+CG C   CP  AI     P
Sbjct: 93  FTVTEACRGCIAHPCMEACPVGAISQINRRAIINQEKCIECGRCRQACPYGAITDTQRP 151



 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C++ CPV      E+ LA I   +CI+CG C   CP  AI
Sbjct: 152 CIKACPVKAISYSEDKLATIDQKKCINCGQCAYRCPFGAI 191


>gi|291548594|emb|CBL24856.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus torques L2-14]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+++ C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI 
Sbjct: 1  MAHVISDECVSCGT--CEGECPVGAISEGDGKYEIDADACVDCGACEAACPTGAIS 54


>gi|302342304|ref|YP_003806833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301638917|gb|ADK84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 352

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C++C    C + C +D F  G++ + ++ D CI CG+C   CP +A+K    P
Sbjct: 275 EACVMCGL--CEDRCQMDVFSPGDDAMILNMDRCIGCGLCVTTCPSEALKLVRRP 327


>gi|157963939|ref|YP_001503973.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848939|gb|ABV89438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCDDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|325663172|ref|ZP_08151622.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086762|ref|ZP_08335839.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325470626|gb|EGC73856.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330409928|gb|EGG89363.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I+ D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSCGA--CEAECPVGAISQGADHYEINADACVDCGACAAQCPTGAISAE 56


>gi|302878833|ref|YP_003847397.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
 gi|302581622|gb|ADL55633.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
          Length = 796

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  +C  C+H  C++ CP D  +   N      D CI CG C+  CP   I+
Sbjct: 672 VPTSCRHCEHPHCMKDCPPDAIHRSINGEVFISDNCIGCGNCQTNCPYGVIQ 723


>gi|89902029|ref|YP_524500.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346766|gb|ABD70969.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 210

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCAYACPFGA 101


>gi|89092832|ref|ZP_01165784.1| formate dehydrogenase, iron-sulfur subunit [Oceanospirillum sp.
           MED92]
 gi|89082857|gb|EAR62077.1| formate dehydrogenase, iron-sulfur subunit [Oceanospirillum sp.
           MED92]
          Length = 201

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ ++ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYQTDDGIVLHNKDLCIGCGYCLYACPFGA 101


>gi|127510999|ref|YP_001092196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636294|gb|ABO21937.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|302384752|ref|YP_003820574.1| ferredoxin [Clostridium saccharolyticum WM1]
 gi|302195380|gb|ADL02951.1| ferredoxin [Clostridium saccharolyticum WM1]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M  V+++ C+ C    C   CPV    +G++   I  D CIDCG CE  CP  AI 
Sbjct: 1  MARVISDACVSCGS--CEAECPVSAISQGDSQFVIDADTCIDCGACEGVCPTGAIS 54


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           ++ +NCI C  T CV+VCPVD    GE   A  I PD+CI CG C  +C  +AI
Sbjct: 544 IIADNCIGC--TACVKVCPVDAI-SGEKKQAHEIDPDKCIGCGECYEKCKFEAI 594


>gi|288957573|ref|YP_003447914.1| formate dehydrogenase iron-sulfur subunit [Azospirillum sp. B510]
 gi|288909881|dbj|BAI71370.1| formate dehydrogenase iron-sulfur subunit [Azospirillum sp. B510]
          Length = 225

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
            ++  C+ C    C  VCPVDCFY+    + +H  D CI CG C   CP  A
Sbjct: 50  TISVACMHCSDAPCKAVCPVDCFYQTAEGVVLHNKDLCIGCGYCFYACPFGA 101


>gi|303257427|ref|ZP_07343440.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|331000028|ref|ZP_08323724.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859784|gb|EFL82862.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|329573176|gb|EGG54793.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 306

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            +C  C +  CV VCP  C  YE    +++ P++CI C  CE  CP D
Sbjct: 84  RSCFHCTNAGCVTVCPTGCLKYEENGVVSVSPEKCIGCRYCEMACPFD 131


>gi|34556486|ref|NP_906301.1| putative formate dehydrogenase iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|34557139|ref|NP_906954.1| formate dehydrogenase subunit [Wolinella succinogenes DSM 1740]
 gi|34557519|ref|NP_907334.1| putative formate dehydrogenase iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|119888|sp|P27273|FDHB_WOLSU RecName: Full=Formate dehydrogenase iron-sulfur subunit
 gi|48508|emb|CAA37990.1| formate dehydrogenase [Wolinella succinogenes]
 gi|34482200|emb|CAE09201.1| PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT [Wolinella
           succinogenes]
 gi|34482855|emb|CAE09854.1| FORMATE DEHYDROGENASE SUBUNIT [Wolinella succinogenes]
 gi|34483236|emb|CAE10234.1| PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT [Wolinella
           succinogenes]
          Length = 200

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           C+ C    C +VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 59  CMHCSDAPCAQVCPVDCFYVRADGIVLHDKEKCIGCGYCLYACPFGA 105


>gi|303241043|ref|ZP_07327553.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302591468|gb|EFL61206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +TE CI C    C   CPV C   G++   I    CI+CG C   CPVDA K
Sbjct: 1  MAYFITEACISCGA--CEPECPVSCISAGDSSYVIDESACIECGACANVCPVDAPK 54


>gi|254457148|ref|ZP_05070576.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207085940|gb|EDZ63224.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 202

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           M + ++  C+ C    C +VCPVDCFY  E+ + +H  E CI C  C   CP  A
Sbjct: 53  MEFSLSVACMHCTDAPCEQVCPVDCFYIREDGIVLHNKEVCIGCAYCLYACPFGA 107


>gi|297584891|ref|YP_003700671.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297143348|gb|ADI00106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 230

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  CV  CPV   Y+ E+ L +H  D CI C  C   CP   I  + +   + W 
Sbjct: 60  CNHCDHAPCVMACPVTAMYKDEDGLTLHDADRCIGCKACMTACPYGVISFNKKDPHQYWN 119

Query: 68  KINSEYATQWPNITTKKESLPSAAKMD 94
           + N+     W  ++   + +  +A  D
Sbjct: 120 ENNA-----WSELSATPKEVQESAGAD 141


>gi|253680886|ref|ZP_04861689.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
 gi|253562735|gb|EES92181.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
          Length = 494

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +TE C  C    C+EVCP     +      I+ D C +CG+C+  CP +AI     P
Sbjct: 103 YTITEACRGCVQHKCMEVCPAKAINKINGRAYINQDACRECGMCKQVCPYNAISEVMRP 161


>gi|260888766|ref|ZP_05900029.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|330839840|ref|YP_004414420.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
 gi|260861519|gb|EEX76019.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329747604|gb|AEC00961.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEP 61
           + +TE+CI C    C  VCP  C  EGE +  I    C+ CG+C   CPV+AI + D+E 
Sbjct: 152 FRITEDCIGC--GTCAAVCPQQCIAEGEPY-KIAAAHCLHCGLCFESCPVEAIERLDSEA 208


>gi|153854059|ref|ZP_01995392.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
 gi|149753441|gb|EDM63372.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+ + C+ C    C   CPV    +G +   I  D C+DCG C  +CPV AI 
Sbjct: 1  MAHVIGDECVSCG--SCEAECPVGAIAQGADHYEIDADACVDCGACAAQCPVGAIS 54


>gi|11499084|ref|NP_070318.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus DSM 4304]
 gi|6685558|sp|O28783|IORA_ARCFU RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|2649079|gb|AAB89760.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 623

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +TY VTE+C LC        CP    ++GE  ++I    C+ C VC   CP  AIKP
Sbjct: 565 VTYKVTEDCTLCMECVNTFACPA-LIFDGEK-VSIDQSLCVGCAVCAKICPNRAIKP 619


>gi|294674586|ref|YP_003575202.1| ferredoxin [Prevotella ruminicola 23]
 gi|294473796|gb|ADE83185.1| putative ferredoxin [Prevotella ruminicola 23]
          Length = 55

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++CI C    C   CPV+   EGE + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVIGDDCIACGT--CQGECPVEAISEGEKY-SINPDLCTECGTCASVCPSEAIS 53


>gi|169335902|ref|ZP_02863095.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258640|gb|EDS72606.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
          Length = 202

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + E CI CK   C  +CP    YE    + I  + C+ CG+C   CPV A++
Sbjct: 149 YFINETCINCKK--CFNLCPQSAIYELNGIMNIKNENCLHCGLCYENCPVKAVE 200


>gi|167629699|ref|YP_001680198.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592439|gb|ABZ84187.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 493

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT  C  C    C+E CPVD   +      I+  +CI+CG C   CP  AI     P
Sbjct: 110 FTVTGACRGCITHRCIEACPVDAIAQINRLAYINQQKCIECGRCHQVCPYGAITDMQRP 168



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 15/70 (21%)

Query: 1   MTYVVTENCILCKH----------TD----CVEVCPVDCFYEGENFLA-IHPDECIDCGV 45
           + Y+  + CI C            TD    C++ CPV     GE+ +A I P++C+ CG 
Sbjct: 139 LAYINQQKCIECGRCHQVCPYGAITDMQRPCIKACPVKAIQYGEDKIARIDPNKCVSCGH 198

Query: 46  CEPECPVDAI 55
           C   CP  AI
Sbjct: 199 CAVSCPFGAI 208


>gi|158321482|ref|YP_001513989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158141681|gb|ABW19993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++E+CI C    C   CPV     G+    I  D CI+CG C   CPVDA KP+
Sbjct: 1  MAYKISEDCISCGA--CEPECPVSVISAGDTQYVIDADGCIECGACANVCPVDAPKPE 56


>gi|219669808|ref|YP_002460243.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540068|gb|ACL21807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T VV   C  C+   CV+VCP    Y+ E  + ++ + CI C +C   CP  +I   TE
Sbjct: 56  TTVVLTQCRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCARACPFGSITMTTE 114


>gi|331092302|ref|ZP_08341130.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401734|gb|EGG81313.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I  D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSCGA--CEAECPVGAISQGADHYEISADACVDCGACAAQCPTGAISAE 56


>gi|319789973|ref|YP_004151606.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1]
 gi|317114475|gb|ADU96965.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1]
          Length = 505

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
          E C+ CK   CV+ C  +  Y  E+   I  H + C++C  CE  CP DAIK    P
Sbjct: 20 EKCVRCK--SCVDQCSFNATYYDEDLNRIMNHHENCVNCKRCEAFCPTDAIKVVPNP 74


>gi|292491700|ref|YP_003527139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580295|gb|ADE14752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 195

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCTDAPCAAVCPVDCFYTTDDGIVLHDKDLCIGCGYCFYACPFGA 101


>gi|300856866|ref|YP_003781850.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
 gi|300436981|gb|ADK16748.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
          Length = 495

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C+EVCP     + +    I+ D C +CG+C+  CP +AI     P
Sbjct: 104 YRVTEACRGCIQHKCMEVCPAKAISKVDGRAHINQDICKECGMCKKVCPYNAIAEVMRP 162


>gi|254773900|ref|ZP_05215416.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 546

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEY 73
          +C+   P +  +     L I P  C+DCG C   CPV AI PD     +   +++IN+ +
Sbjct: 2  NCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDNRLDDKQLPFVEINASF 61

Query: 74 ATQWPNITTKKESLPSAAKM 93
            + P      + LP  +K+
Sbjct: 62 YPKRP----AGQKLPPTSKL 77


>gi|118463699|ref|YP_880273.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium avium 104]
 gi|118164986|gb|ABK65883.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          avium 104]
          Length = 546

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEY 73
          +C+   P +  +     L I P  C+DCG C   CPV AI PD     +   +++IN+ +
Sbjct: 2  NCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDNRLDDKQLPFVEINASF 61

Query: 74 ATQWPNITTKKESLPSAAKM 93
            + P      + LP  +K+
Sbjct: 62 YPKRP----AGQKLPPTSKL 77


>gi|313157397|gb|EFR56820.1| ferredoxin [Alistipes sp. HGB5]
          Length = 55

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C+ C    C+  CPV+    G+ ++ I P+ CIDCG C   CP +AI P+
Sbjct: 1  MAYKITDSCVACGT--CIGECPVEAISAGDIYV-IDPNTCIDCGTCAGVCPSEAIIPE 55


>gi|304317899|ref|YP_003853044.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779401|gb|ADL69960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V +NC  C+   C++ CP D     +    I PD+CI CG C   C  DAIKP     ++
Sbjct: 191 VGKNCTACQ--TCIKNCPEDAITLVDGKAYIDPDKCIGCGECITMCQYDAIKPQWGTDMD 248

Query: 65  LWLKINSEYA 74
            +++  +EYA
Sbjct: 249 EFVERMTEYA 258


>gi|330828778|ref|YP_004391730.1| formate dehydrogenase iron-sulfur subunit [Aeromonas veronii B565]
 gi|328803914|gb|AEB49113.1| Formate dehydrogenase iron-sulfur subunit [Aeromonas veronii B565]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYHTDDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|119776740|ref|YP_929480.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
 gi|119769240|gb|ABM01811.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ E  + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEEGIVLHDKDTCIGCGYCLYACPFGA 103


>gi|302340131|ref|YP_003805337.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637316|gb|ADK82743.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 447

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +V   CI C H  C+  CP +          + P+ C+DCG C   CPVDAI
Sbjct: 12 IVEAKCIGCTH--CMLTCPTEAIRVFGGKAHVDPNRCVDCGNCMSVCPVDAI 61


>gi|258514612|ref|YP_003190834.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778317|gb|ACV62211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV E+ CI C    C EVCP       E    I  D+CI CG C   CPV A   D +  
Sbjct: 189 VVDEDKCIGCG--GCSEVCPEQAITMSEMKANIDLDKCIGCGECLTVCPVKANGIDWQTD 246

Query: 63  LELWLKINSEYA 74
           LE +L+  +EY 
Sbjct: 247 LEAFLERMAEYG 258


>gi|160934887|ref|ZP_02082273.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
 gi|156866340|gb|EDO59712.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +++ CI C    C   CPV+   EG+    I  D CIDCG C   CPV A
Sbjct: 1  MAYKISDECISCGA--CEAGCPVNAISEGDGKYVIDADTCIDCGACADACPVGA 52


>gi|15899475|ref|NP_344080.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
 gi|13816091|gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
          Length = 409

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           I C H D   C++VCP +   + E   + I  D+CI CG C   CP +A+K + E
Sbjct: 61  IACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 115


>gi|254490549|ref|ZP_05103735.1| hypothetical protein MDMS009_881 [Methylophaga thiooxidans
          DMS010]
 gi|224464293|gb|EEF80556.1| hypothetical protein MDMS009_881 [Methylophaga thiooxydans
          DMS010]
          Length = 63

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 45 VCEPECPVDAI-KPDTEPGLEL-WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +CEPECP +AI   D  P  ++ +L+IN E +  WP I+ KK+ LP A + DG   K
Sbjct: 1  MCEPECPAEAIFSEDDLPDEQMEFLQINEELSQVWPVISEKKDPLPDAEEWDGKSDK 57


>gi|157377550|ref|YP_001476150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319924|gb|ABV39022.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 196

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A
Sbjct: 57  CMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGA 103


>gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
 gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
          Length = 1178

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 17  CVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  +CPVD F +G  +    + PD CI C VC   CP DA++P   P
Sbjct: 261 CERLCPVD-FLDGLGQPRAGLEPDACIRCQVCVEACPTDAMRPVYGP 306


>gi|291522007|emb|CBK80300.1| 4Fe-4S binding domain [Coprococcus catus GD/7]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CPV    EG+    I  + C+DCG C   CP +AI  +
Sbjct: 1  MAYVISDACVSCGT--CAGECPVGAISEGDGKYVIDANACLDCGSCAGACPTEAISQE 56


>gi|117619514|ref|YP_857564.1| formate dehydrogenase iron-sulfur subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560921|gb|ABK37869.1| formate dehydrogenase iron-sulfur subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYHTDDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|51246839|ref|YP_066723.1| formate dehydrogenase, iron-sulfur chain [Desulfotalea psychrophila
           LSv54]
 gi|50877876|emb|CAG37716.1| probable formate dehydrogenase, iron-sulfur chain [Desulfotalea
           psychrophila LSv54]
          Length = 188

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           C+ C    C +VCPVDCFY  E+ + +H  E CI CG C   CP  A
Sbjct: 60  CMHCADAPCQKVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGA 106


>gi|310659593|ref|YP_003937314.1| ferredoxin [Clostridium sticklandii DSM 519]
 gi|322510027|sp|P80168|FER_CLOSD RecName: Full=Ferredoxin
 gi|308826371|emb|CBH22409.1| Ferredoxin [Clostridium sticklandii]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV+    G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVINDSCISCGA--CEPECPVNAITAGDDKYVIDAATCIDCGACAGVCPVDAPQPE 56


>gi|299135397|ref|ZP_07028587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589805|gb|EFI50010.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A +       
Sbjct: 51  ISMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQ------- 103

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             + K+ +  +    +  T     P A   DG K++YEKY
Sbjct: 104 --YPKLGNFGSRGKMDKCTFCAGGPEA---DGSKEEYEKY 138


>gi|268610306|ref|ZP_06144033.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ruminococcus flavefaciens FD-1]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y+++++CI C    C   CPV    EG+    I  D C++CG C   CPV A
Sbjct: 1  MAYIISDDCISCGA--CAGECPVSAISEGDGKYQIDADACVECGACAGVCPVGA 52


>gi|167622047|ref|YP_001672341.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352069|gb|ABZ74682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 195

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY  +  + +H  E CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDEGIVLHNKETCIGCGYCLYACPFGA 103


>gi|210620552|ref|ZP_03292100.1| hypothetical protein CLOHIR_00043 [Clostridium hiranonis DSM
          13275]
 gi|210155266|gb|EEA86272.1| hypothetical protein CLOHIR_00043 [Clostridium hiranonis DSM
          13275]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ C+ C    C   CPV    EG++   I  D C++CG C   CPV A
Sbjct: 1  MAYKITDACVSCGA--CAAECPVGAISEGDSIYVIDADACVECGACAEACPVGA 52


>gi|319794274|ref|YP_004155914.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315596737|gb|ADU37803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV CFY  +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVQCFYRTDEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|307265233|ref|ZP_07546791.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919677|gb|EFN49893.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 513

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C+EVCP       +    I  D+CI+CG C+  CP +AI     P
Sbjct: 100 YRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNAISDTLRP 158


>gi|225017215|ref|ZP_03706407.1| hypothetical protein CLOSTMETH_01141 [Clostridium methylpentosum
          DSM 5476]
 gi|224949990|gb|EEG31199.1| hypothetical protein CLOSTMETH_01141 [Clostridium methylpentosum
          DSM 5476]
          Length = 57

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y++ ++CI C    C   CPV+   EG+    I  D CI+CG C   CPV+A  P+ 
Sbjct: 1  MAYIINDDCISCGA--CEAECPVNAITEGDGKYCIDKDTCIECGACAGVCPVNAPNPEA 57


>gi|120600660|ref|YP_965234.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291439|ref|YP_001181863.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560753|gb|ABM26680.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563129|gb|ABP74064.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428330|gb|ADV56404.1| formate dehydrogenase, FeS subunit, FdhB [Shewanella putrefaciens
           200]
          Length = 189

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|78777018|ref|YP_393333.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497558|gb|ABB44098.1| Formate dehydrogenase beta subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 196

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY   + + +H  D+CI CG C   CP  A
Sbjct: 57  MSMACMHCTDAPCQQVCPVDCFYIRADGIVLHDKDKCIGCGYCLFACPFGA 107


>gi|291165831|gb|EFE27878.1| Fe-hydrogenase large subunit family protein [Filifactor alocis ATCC
           35896]
          Length = 498

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT  C  C    C++VCPV     GE    I  ++CI CG C+  CP +AI
Sbjct: 116 VTSTCRQCMAHPCIQVCPVGAITMGETQTHIDKEKCIKCGKCKEACPYNAI 166


>gi|154149965|ref|YP_001403583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Methanoregula boonei 6A8]
 gi|153998517|gb|ABS54940.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanoregula boonei 6A8]
          Length = 118

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C+   C EVCP   F EGE    + +P  C++CG C   CPV AI   +  G  
Sbjct: 14 AEKCINCRR--CTEVCPHGVFAEGEKTAVLGNPRACMECGACAKNCPVQAISVQSGVGCA 71

Query: 65 LWL 67
            +
Sbjct: 72 SAM 74


>gi|170729130|ref|YP_001763156.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814477|gb|ACA89061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 196

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCQAVCPADCFYRTDDGIVLHNKDTCIGCGYCLYACPFGA 103


>gi|257064392|ref|YP_003144064.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792045|gb|ACV22715.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          C+E C   C    +N + + P +CI CG C   CP DAI P      EL
Sbjct: 36 CLESCAGGCIGYEDNEITVDPTKCIGCGTCATVCPTDAIHPKKPTDAEL 84


>gi|220925126|ref|YP_002500428.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949733|gb|ACL60125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGA 101


>gi|261601245|gb|ACX90848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           I C H D   C++VCP +   + E   + I  D+CI CG C   CP +A+K + E
Sbjct: 50  IACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|313887884|ref|ZP_07821563.1| ferredoxin [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846050|gb|EFR33432.1| ferredoxin [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  EG+ + +I   +CIDCG C   CPV A  P+
Sbjct: 1  MAYVINDSCIACGA--CQPECPVGCISEGDIY-SIDESQCIDCGSCAAVCPVGAPNPE 55


>gi|288800744|ref|ZP_06406201.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
 gi|288332205|gb|EFC70686.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
          Length = 55

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++ +C+ C    C++ CPV+   EG +  +I+PD C +CG C   CP ++I 
Sbjct: 1  MAYVISNDCVACGT--CIDECPVEAISEG-SIYSINPDACTECGSCAAVCPTESIS 53


>gi|240137055|ref|YP_002961524.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           AM1]
 gi|240007021|gb|ACS38247.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           AM1]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLC--LSCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELW 66
           E W
Sbjct: 565 EAW 567



 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        T C++VCP        + +AI P  C  CG C   CP  A      P 
Sbjct: 258 LCAHSRSRITGCTRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPA 317

Query: 63  LELWLKINS 71
             L  ++ S
Sbjct: 318 DALMRRLRS 326


>gi|167756634|ref|ZP_02428761.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|237733922|ref|ZP_04564403.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702809|gb|EDS17388.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|229383003|gb|EEO33094.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 507

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V+  C  C    C+EVCP +   F +G+ +  I  D+CI CG+C+  CP DAI     
Sbjct: 113 FEVSSGCQACLAHPCIEVCPKNAISFKDGKAY--IDQDKCIKCGLCKTNCPYDAILKRER 170

Query: 61  P 61
           P
Sbjct: 171 P 171


>gi|170741277|ref|YP_001769932.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195551|gb|ACA17498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGA 101


>gi|153002610|ref|YP_001368291.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160877331|ref|YP_001556647.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971437|ref|YP_002356188.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|304412793|ref|ZP_07394395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307457|ref|ZP_07587192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|151367228|gb|ABS10228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160862853|gb|ABX51387.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496572|gb|ACK44765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|304348873|gb|EFM13289.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910245|gb|EFN40678.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|315269536|gb|ADT96389.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 189

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|323344712|ref|ZP_08084936.1| ferredoxin [Prevotella oralis ATCC 33269]
 gi|323093982|gb|EFZ36559.1| ferredoxin [Prevotella oralis ATCC 33269]
          Length = 55

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV    EG  +  I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACGS--CIDECPVGAISEGNKY-NINPDMCTECGTCADVCPNEAIS 53


>gi|289450529|ref|YP_003475312.1| ferredoxin [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185076|gb|ADC91501.1| ferredoxin [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +++ CI C    C   CP      G+    I+P+ CIDCG CE  CPV AI  +
Sbjct: 1  MAYKISDMCISCGT--CEMECPTSSISAGDTQYIINPETCIDCGACEGACPVGAISAE 56


>gi|217971441|ref|YP_002356192.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496576|gb|ACK44769.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 198

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY   + + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTVDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|126176326|ref|YP_001052475.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999531|gb|ABN63606.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 187

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY  ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGA 103


>gi|291288299|ref|YP_003505115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Denitrovibrio acetiphilus DSM 12809]
 gi|290885459|gb|ADD69159.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Denitrovibrio acetiphilus DSM 12809]
          Length = 55

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + ++C  C    C + CPV    EG++   I  D C DCG C   CPVDAI  
Sbjct: 1  MAYTINDSCTNCGV--CEDECPVGAISEGDDVRVIDADTCTDCGACAEVCPVDAIDA 55


>gi|119776748|ref|YP_929488.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
 gi|119769248|gb|ABM01819.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 580

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+NC LC    CV +CP     +G  E  L      C+ CG+CE  CP   I
Sbjct: 445 VATDNCTLC--MSCVAICPTAALKDGGDEPKLLFTEQNCVQCGLCEAACPEKVI 496


>gi|331270381|ref|YP_004396873.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
 gi|329126931|gb|AEB76876.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
          Length = 494

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +TE C  C    C+EVCP     +      I+ D C +CG+C+  CP +AI     P
Sbjct: 103 YTITEACRGCVQHKCMEVCPAKAITKINGRAYINQDVCRECGMCKQVCPYNAISEVMRP 161


>gi|188585177|ref|YP_001916722.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349864|gb|ACB84134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 284

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C+ C    CV  CP D  Y+ +     I    C++CG C   CP +AIK D + 
Sbjct: 90  YFKKNACLHCNEASCVMACPADAIYKDDLGLTQIDNSICVNCGYCVSACPYNAIKYDRKK 149

Query: 62  GL 63
           G+
Sbjct: 150 GV 151


>gi|297544478|ref|YP_003676780.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842253|gb|ADH60769.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 506

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C+EVCP       +    I  D+CI+CG C+  CP +AI     P
Sbjct: 100 YRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNAISDTLRP 158


>gi|254559063|ref|YP_003066158.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
 gi|254266341|emb|CAX22105.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLC--LSCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELW 66
           E W
Sbjct: 565 EAW 567



 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        T C++VCP        + +AI P  C  CG C   CP  A      P 
Sbjct: 258 LCAHSRSRITGCTRCLDVCPTGAISPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPA 317

Query: 63  LELWLKINS 71
             L  ++ S
Sbjct: 318 DALMRRLRS 326


>gi|301061526|ref|ZP_07202288.1| anaerobic dimethyl sulfoxide reductase chain B family protein
           [delta proteobacterium NaphS2]
 gi|300444334|gb|EFK08337.1| anaerobic dimethyl sulfoxide reductase chain B family protein
           [delta proteobacterium NaphS2]
          Length = 149

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           LC+H D   C EVCP +  Y+ ++  + + PD+CI CG C  ECP  AI  D E G+
Sbjct: 58  LCRHCDDPPCAEVCPEEIIYKRDDGIVVLDPDKCIGCGSCIDECPYGAIVFDHENGV 114


>gi|218528461|ref|YP_002419277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218520764|gb|ACK81349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLC--LSCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELW 66
           E W
Sbjct: 565 EAW 567



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        T C++VCP        + +AI P  C  CG C   CP  A      P 
Sbjct: 258 LCAHSRSRITGCTRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPA 317

Query: 63  LELWLKINS 71
             L  ++ S
Sbjct: 318 DALMRRLRS 326


>gi|119990|sp|P00195|FER_CLOPA RecName: Full=Ferredoxin
 gi|144806|gb|AAA83524.1| ferredoxin [Clostridium pasteurianum]
 gi|208373|gb|AAA73179.1| ferredoxin [synthetic construct]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + ++C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A
Sbjct: 1  MAYKIADSCVSCGA--CASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGA 52


>gi|225028182|ref|ZP_03717374.1| hypothetical protein EUBHAL_02454 [Eubacterium hallii DSM 3353]
 gi|224954494|gb|EEG35703.1| hypothetical protein EUBHAL_02454 [Eubacterium hallii DSM 3353]
          Length = 56

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C   CP     EG+    I  D C+DCG C   CP  AI 
Sbjct: 1  MAYVISDDCISCGT--CEGECPAGAISEGDGKYEIDADTCMDCGSCAGACPAGAIS 54


>gi|153956381|ref|YP_001397146.1| ferredoxin [Clostridium kluyveri DSM 555]
 gi|146349239|gb|EDK35775.1| Ferredoxin [Clostridium kluyveri DSM 555]
          Length = 57

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV+C  +G+    I    CIDCG C   CPV A+
Sbjct: 1  MAYKITDACMNCGA--CASECPVECISQGDTQFLIDDGTCIDCGSCASVCPVGAL 53


>gi|163849840|ref|YP_001637883.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|188579726|ref|YP_001923171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|218528470|ref|YP_002419286.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240137064|ref|YP_002961533.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens AM1]
 gi|254559072|ref|YP_003066167.1| formate dehydrogenase iron-sulfur subunit beta [Methylobacterium
           extorquens DM4]
 gi|27902653|gb|AAO24617.1| formate dehydrogenase beta subunit [Methylobacterium extorquens]
 gi|163661445|gb|ABY28812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
 gi|179343224|gb|ACB78636.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|218520773|gb|ACK81358.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240007030|gb|ACS38256.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens AM1]
 gi|254266350|emb|CAX22114.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens DM4]
          Length = 198

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGCGYCFYACPFGA 101


>gi|170749608|ref|YP_001755868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656130|gb|ACB25185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 198

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGCGYCFYACPFGA 101


>gi|148378067|ref|YP_001252608.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 3502]
 gi|153934228|ref|YP_001382466.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 19397]
 gi|153936953|ref|YP_001386018.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. Hall]
 gi|153941409|ref|YP_001389424.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. Langeland]
 gi|168181164|ref|ZP_02615828.1| ferredoxin, 4Fe-4S [Clostridium botulinum NCTC 2916]
 gi|168185099|ref|ZP_02619763.1| ferredoxin, 4Fe-4S [Clostridium botulinum Bf]
 gi|170755610|ref|YP_001779687.1| ferredoxin, 4Fe-4S [Clostridium botulinum B1 str. Okra]
 gi|170758331|ref|YP_001785390.1| ferredoxin, 4Fe-4S [Clostridium botulinum A3 str. Loch Maree]
 gi|187777348|ref|ZP_02993821.1| hypothetical protein CLOSPO_00900 [Clostridium sporogenes ATCC
          15579]
 gi|226947285|ref|YP_002802376.1| ferredoxin, 4Fe-4S [Clostridium botulinum A2 str. Kyoto]
 gi|237793373|ref|YP_002860925.1| ferredoxin, 4Fe-4S [Clostridium botulinum Ba4 str. 657]
 gi|148287551|emb|CAL81615.1| ferredoxin [Clostridium botulinum A str. ATCC 3502]
 gi|152930272|gb|ABS35772.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 19397]
 gi|152932867|gb|ABS38366.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. Hall]
 gi|152937305|gb|ABS42803.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. Langeland]
 gi|169120822|gb|ACA44658.1| ferredoxin, 4Fe-4S [Clostridium botulinum B1 str. Okra]
 gi|169405320|gb|ACA53731.1| ferredoxin, 4Fe-4S [Clostridium botulinum A3 str. Loch Maree]
 gi|182667994|gb|EDT79973.1| ferredoxin, 4Fe-4S [Clostridium botulinum NCTC 2916]
 gi|182671843|gb|EDT83804.1| ferredoxin, 4Fe-4S [Clostridium botulinum Bf]
 gi|187774276|gb|EDU38078.1| hypothetical protein CLOSPO_00900 [Clostridium sporogenes ATCC
          15579]
 gi|226844082|gb|ACO86748.1| ferredoxin, 4Fe-4S [Clostridium botulinum A2 str. Kyoto]
 gi|229261182|gb|ACQ52215.1| ferredoxin, 4Fe-4S [Clostridium botulinum Ba4 str. 657]
 gi|295317534|gb|ADF97911.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. 230613]
 gi|322804331|emb|CBZ01881.1| ferredoxin [Clostridium botulinum H04402 065]
          Length = 56

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A
Sbjct: 1  MAYKITDACVSCGA--CAAECPVNAISQGDSIFDIDADTCIDCGNCANVCPVGA 52


>gi|169351005|ref|ZP_02867943.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
 gi|169292067|gb|EDS74200.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
          Length = 507

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C+E+CP +   F  G+ +  I  D+CI CG+C+  CP DAI     
Sbjct: 113 YEVSNGCQACLAHPCIEICPKNAISFKNGKAY--IDQDKCIKCGLCKNNCPYDAILKKER 170

Query: 61  P 61
           P
Sbjct: 171 P 171


>gi|92114039|ref|YP_573967.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797129|gb|ABE59268.1| formate dehydrogenase beta subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 216

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCFY+ ++ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCDDAPCMAVCPTDCFYKTDDGIVLHDKDICIGCGYCLYACPFGA 101


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + CI C    C + CPVD    GE       I P++CI CG C  +CP D I   + 
Sbjct: 570 VLEDQCIACG--ICAKACPVDAI-SGERKKPPYKIDPEKCIRCGACMEKCPKDVIIRGSI 626

Query: 61  PGLE 64
           PG +
Sbjct: 627 PGFK 630



 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +  ++L +  D+CI CG+C   CPVDAI
Sbjct: 557 CPAGVCKDLLHYLVLE-DQCIACGICAKACPVDAI 590


>gi|153002602|ref|YP_001368283.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151367220|gb|ABS10220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 553

 Score = 43.1 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C +C    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + AT+    T K+E+
Sbjct: 468 VISLTPQINFDKATRQQQHTLKEEA 492


>gi|170729134|ref|YP_001763160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814481|gb|ACA89065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 560

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV  CP     +G +  A+H    +C+ CG+CE  CP  AI
Sbjct: 425 VNTQACTLC--LSCVSTCPTQALTDGGDKPALHFVEQDCVQCGLCESACPEKAI 476


>gi|218961763|ref|YP_001741538.1| putative electron transfer flavoprotein alpha-subunit (etfA and
          4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730420|emb|CAO81332.1| putative electron transfer flavoprotein alpha-subunit (etfA and
          4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
          acidaminovorans]
          Length = 398

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+ E C+ C    C+  C  D     E    I  D+C+ CG C   CP DAI
Sbjct: 3  MIEVLIEKCVGCGA--CLRACAYDAIKIEEKLAIIDSDKCVLCGACVSACPFDAI 55


>gi|288574184|ref|ZP_06392541.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569925|gb|EFC91482.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 372

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CILC    CVE+CP D     +  L    ++CI C  C   CP +AI+
Sbjct: 310 KRCILCGR--CVEICPADAITMRDRRLVFDYEKCIRCYCCHEMCPANAIR 357


>gi|163849831|ref|YP_001637874.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163661436|gb|ABY28803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
          Length = 679

 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 521 TEDCTLC--LSCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 578

Query: 64  ELW 66
           E W
Sbjct: 579 EAW 581



 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        T C++VCP        + +AI P  C  CG C   CP  A      P 
Sbjct: 272 LCAHSRSRITGCTRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPA 331

Query: 63  LELWLKINS 71
             L  ++ S
Sbjct: 332 DALMRRLRS 340


>gi|298372543|ref|ZP_06982533.1| ferredoxin, 4Fe-4S [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275447|gb|EFI16998.1| ferredoxin, 4Fe-4S [Bacteroidetes oral taxon 274 str. F0058]
          Length = 55

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T++C+ C    C+  CPV    EG+ ++ I P  C  CG C   CP +AI P+
Sbjct: 1  MAYVITDDCVACG--TCIGECPVGAISEGDIYV-IDPTACTSCGTCAEVCPSEAIHPE 55


>gi|325265960|ref|ZP_08132646.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
 gi|324982598|gb|EGC18224.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
          Length = 284

 Score = 43.1 bits (100), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+    CI C  T C+  CPVD        +  +  DEC  CG+C P CPVD I
Sbjct: 72  VAYIDEAVCIGC--TACIRACPVDAIMGASKLMHTVLADECTGCGLCVPPCPVDCI 125


>gi|212550384|ref|YP_002308701.1| ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
          genomovar. CFP2]
 gi|212548622|dbj|BAG83290.1| ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
          genomovar. CFP2]
          Length = 55

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+TE+CI C    C++ CPV+   EG+ + +I  + C +CG C   CP +AI
Sbjct: 1  MAYVITEDCIACGT--CIDECPVEAISEGDIY-SIDANNCTECGSCASVCPSEAI 52


>gi|254430471|ref|ZP_05044174.1| 4Fe-4S binding domain protein [Cyanobium sp. PCC 7001]
 gi|197624924|gb|EDY37483.1| 4Fe-4S binding domain protein [Cyanobium sp. PCC 7001]
          Length = 74

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C + G+        F  I  D CIDCG+C   CPV+ AI P+ +P L+
Sbjct: 14 ADCVDACPVACIHPGQGANSKGTGFYWIDFDTCIDCGICLQVCPVEGAILPEEKPELQ 71


>gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
 gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
          Length = 441

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 16/108 (14%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +T+ CI C  T C +VCPV C   + +    I  ++C+ CG C   CP+ A+     P
Sbjct: 25  FQITDKCIGC--TKCAKVCPVSCISGKIKEKHVIDTEKCVKCGQCISACPMGAL-----P 77

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
            ++  L +         NI  KK  L  A     ++    +YF   PG
Sbjct: 78  TIDFTLNLK--------NILNKKNKLIIAQVAPSIRATLGEYFGLEPG 117


>gi|29654985|ref|NP_820677.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coxiella burnetii RSA 493]
 gi|154707199|ref|YP_001423730.1| electron transport complex protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161830706|ref|YP_001597520.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 331]
 gi|29542254|gb|AAO91191.1| electron transport complex protein [Coxiella burnetii RSA 493]
 gi|154356485|gb|ABS77947.1| electron transport complex protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161762573|gb|ABX78215.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 331]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I  D 
Sbjct: 80  IAFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCI--DM 135

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           +    L      + A QW +   KK+   S  K +  ++  E      P
Sbjct: 136 KIIAPLTPHEKKQKAQQWRSRYEKKQKRLSRHKAEQRRKHQEAKLVNTP 184


>gi|121533839|ref|ZP_01665666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
 gi|121307830|gb|EAX48745.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
          Length = 55

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +TE C+ C    C   CPV    EG N   +  +EC++CG C   CPV AIK
Sbjct: 1  MAYKITEECVACG--SCAATCPVGAIKEG-NPTYVITEECVECGACAAVCPVGAIK 53


>gi|165918320|ref|ZP_02218406.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 334]
 gi|165917970|gb|EDR36574.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 334]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I  D 
Sbjct: 80  IAFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCI--DM 135

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           +    L      + A QW +   KK+   S  K +  ++  E      P
Sbjct: 136 KIIAPLTPHEKKQKAQQWRSRYEKKQKRLSRHKAEQRRKHQEAKLVNTP 184


>gi|119988|sp|P00198|FER_CLOAC RecName: Full=Ferredoxin
 gi|157831050|pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin
          From Clostridium Acidurici At 1.84 Angstroms Resolution
 gi|157834957|pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
          Length = 55

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV+ E CI C    C   CPV+    G++   I  D CIDCG C   CPVDA
Sbjct: 1  AYVINEACISCGA--CEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDA 51


>gi|237752044|ref|ZP_04582524.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376611|gb|EEO26702.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 209

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
            V+  C+ C    C +VCPVDCFY   + + +H  + CI CG C   CP  A
Sbjct: 62  AVSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|269121613|ref|YP_003309790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
          termitidis ATCC 33386]
 gi|268615491|gb|ACZ09859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
          termitidis ATCC 33386]
          Length = 57

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +  E CI C    C  VCPV+   E +   AI    CIDCG CE  CPV+AI  +
Sbjct: 1  MAYSINKETCIACGA--CEGVCPVEAIAEADGKYAIDGATCIDCGACEGVCPVEAISGE 57


>gi|257063357|ref|YP_003143029.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
 gi|256791010|gb|ACV21680.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
          Length = 425

 Score = 43.1 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 4  VVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +  E C++ ++ +     C   C   C    +N +AI  ++CI CG C   CP +AI P 
Sbjct: 21 ITAERCLMVRNRNARCNRCAAACVSGCINTHDNRIAIDAEKCIGCGTCATVCPTEAIAPR 80

Query: 59 TEPGLEL 65
              LE+
Sbjct: 81 NPDDLEI 87


>gi|210620595|ref|ZP_03292143.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
 gi|210155309|gb|EEA86315.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
          Length = 211

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ CI C    C+EVCP +C  E +   N + I+   C+ CG C   CPV+AI
Sbjct: 154 YFVTDKCINCGR--CIEVCPQNCIVEDQKNWNQVKINHLNCLSCGNCVEVCPVEAI 207


>gi|157737738|ref|YP_001490421.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|157737750|ref|YP_001490434.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|315637769|ref|ZP_07892966.1| formate dehydrogenase [Arcobacter butzleri JV22]
 gi|157699592|gb|ABV67752.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|157699604|gb|ABV67764.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|315477939|gb|EFU68675.1| formate dehydrogenase [Arcobacter butzleri JV22]
          Length = 197

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           + ++  C+ C    C +VCP DCFY   + + +H  D+CI CG C   CP  A
Sbjct: 56  FSLSMACMHCADAPCQQVCPTDCFYIRTDGIVLHDKDKCIGCGYCLFACPFGA 108


>gi|238917328|ref|YP_002930845.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238872688|gb|ACR72398.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 489

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+VT+NC  C    C + C         +   I PD+C +CG+C   CP +AI     P
Sbjct: 97  YIVTDNCRKCMMKACQQACKFGAVSMTRDRAYIDPDKCKECGMCAKACPYNAIADLIRP 155


>gi|224370160|ref|YP_002604324.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
 gi|223692877|gb|ACN16160.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
          Length = 511

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C++C    C   CP    +      AI P  C  CG+C  ECP+DAI+
Sbjct: 322 CVIC--LTCYRCCPHGAIFWENGVAAISPVACQGCGICASECPMDAIQ 367


>gi|215445027|ref|ZP_03431779.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T85]
          Length = 159

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSEY 73
          +C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ Y
Sbjct: 2  NCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINASY 61

Query: 74 ATQWP 78
            + P
Sbjct: 62 YPKRP 66


>gi|77919429|ref|YP_357244.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
 gi|77545512|gb|ABA89074.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
           Y     C  C  + CV  CPV      +    I P++C+ CG C   CP +A  ++ D +
Sbjct: 12  YTRETECQDC--SKCVRYCPVKAIKVADGQARIVPEKCVACGTCVRVCPANAKRVRDDLD 69

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
           P   + L  +  Y +  P+  ++   +PS   +  +++
Sbjct: 70  PTKRMLLSSDRVYVSLAPSYVSEFPDIPSTQIIAALRK 107


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+T++C  C  T CV+ CPVD  + E +    I+ D CI CG C  +CP  AI
Sbjct: 542 YVITDDCKGC--TLCVKACPVDAIHGERKAVHLINTDTCIKCGACVDKCPFKAI 593


>gi|293607054|ref|ZP_06689397.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
 gi|292814544|gb|EFF73682.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
          Length = 416

 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E CI C    C E CPVD      N   + PD C  C  C P CP  +I        + W
Sbjct: 18 EICIRC--NTCEETCPVDAITHDSNNYVVDPDICNGCMACVPPCPTGSI--------DNW 67

Query: 67 -LKINSE-YATQ----WPNITTKKESLPSAA 91
           L + SE Y+ Q    W  +  K++SLP+ A
Sbjct: 68 RLMVRSEAYSVQEQLGWEEL-PKEKSLPTPA 97



 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I P+ CI C  CE  CPVDAI  D+
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDS 39


>gi|119776744|ref|YP_929484.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
 gi|119769244|gb|ABM01815.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
          Length = 198

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP +CFY+ ++ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPANCFYKTDDGIVLHNKDTCIGCGYCFYACPFGA 103


>gi|325264637|ref|ZP_08131367.1| conserved domain protein [Clostridium sp. D5]
 gi|324030299|gb|EGB91584.1| conserved domain protein [Clostridium sp. D5]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + + C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI+ +
Sbjct: 1  MAHFINDECVSCGS--CEGECPVGAIAEGDGKYVIDADACVDCGACEGACPTGAIQAE 56


>gi|256810171|ref|YP_003127540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256793371|gb|ACV24040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C++  C E+CPVD  Y  E    +  + CI CG+C   CP+ AI
Sbjct: 42 CMQCENAPCKEICPVDAIYLKEGIPIVEKERCIACGMCAIACPIGAI 88


>gi|330997493|ref|ZP_08321342.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
 gi|329570524|gb|EGG52248.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
          Length = 54

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++C+ C    C++ CPV    EGE ++ I+ D C +CG C   CP  AI 
Sbjct: 1  MAYVIGDDCVACGT--CIDECPVGAISEGEKYV-INADACTECGTCADVCPSGAIS 53


>gi|259416523|ref|ZP_05740443.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259347962|gb|EEW59739.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 667

 Score = 42.7 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 10  ILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +LC H        T C++ CP        + +AI P  C  CG C   CP  AI  D  P
Sbjct: 284 LLCAHSRARQTGCTRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSSAITYDAPP 343

Query: 62  GLELWLKINS 71
              L+L++ +
Sbjct: 344 AESLFLRVQT 353



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI    EP L L
Sbjct: 519 CTLC--LSCVSLCPPGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAIT--YEPRLNL 573


>gi|224418325|ref|ZP_03656331.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter canadensis MIT 98-5491]
 gi|253827646|ref|ZP_04870531.1| formate dehydrogenase subunit B [Helicobacter canadensis MIT
           98-5491]
 gi|313141855|ref|ZP_07804048.1| formate dehydrogenase iron-sulfur subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253511052|gb|EES89711.1| formate dehydrogenase subunit B [Helicobacter canadensis MIT
           98-5491]
 gi|313130886|gb|EFR48503.1| formate dehydrogenase iron-sulfur subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
            V+  C+ C    C +VCPVDCFY   + + +H  + CI CG C   CP  A
Sbjct: 62  AVSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|300855183|ref|YP_003780167.1| Fe-S-cluster-containing hydrogenase component [Clostridium
           ljungdahlii DSM 13528]
 gi|300435298|gb|ADK15065.1| Fe-S-cluster-containing hydrogenase component [Clostridium
           ljungdahlii DSM 13528]
          Length = 190

 Score = 42.7 bits (99), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C  + C  VCPV      EN + +  + CI C +C   CP  A+  D  P  +    
Sbjct: 59  CRQCDDSPCANVCPVGAIVHQENKVVVKTELCIGCKICMLACPFGAM--DMAPQYK---- 112

Query: 69  INSEYATQWPNITTKKES 86
            NS   TQ  N+ TK+ES
Sbjct: 113 -NSHKQTQILNVITKEES 129


>gi|210613377|ref|ZP_03289697.1| hypothetical protein CLONEX_01904 [Clostridium nexile DSM 1787]
 gi|210151219|gb|EEA82227.1| hypothetical protein CLONEX_01904 [Clostridium nexile DSM 1787]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I  D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSCGA--CEAECPVGAISQGADHYEIDKDACVDCGACAAQCPTGAISAE 56


>gi|281422556|ref|ZP_06253555.1| conserved domain protein [Prevotella copri DSM 18205]
 gi|281403380|gb|EFB34060.1| conserved domain protein [Prevotella copri DSM 18205]
          Length = 55

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++CI C    C++ CP     EGE + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVIGDDCIACGT--CIDECPSGAISEGEKY-SINPDLCTECGTCADVCPNEAIS 53


>gi|219851494|ref|YP_002465926.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219545753|gb|ACL16203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 203

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 12  CKHTD---CVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+H D   C++VCP +  Y       +AIH + CIDC VC   CP   I+      ++L 
Sbjct: 59  CRHCDPAPCMQVCPTEALYRDLSTGSVAIHYNRCIDCAVCAMACPFGVIRFQRVRQVDLP 118

Query: 67  LKINSE 72
             +N++
Sbjct: 119 RDVNAK 124


>gi|212211971|ref|YP_002302907.1| electron transport complex protein [Coxiella burnetii CbuG_Q212]
 gi|212010381|gb|ACJ17762.1| electron transport complex protein [Coxiella burnetii CbuG_Q212]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I  D 
Sbjct: 80  IAFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCI--DM 135

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           +    L      + A QW +   KK+   S  K +  ++  E      P
Sbjct: 136 KIIAPLTPHEKKQKAQQWRSRYEKKQKRLSRHKAEQRRKHQEAKLVNTP 184


>gi|309390025|gb|ADO77905.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 501

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + VT NC  C    C  VCPVD     E    I  ++CI+CG C+  CP +AI
Sbjct: 115 AHFVTNNCRKCLAHPCSIVCPVDAITIEEKAAVIDQEKCINCGKCKKACPYEAI 168


>gi|242309248|ref|ZP_04808403.1| fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter pullorum MIT 98-5489]
 gi|239524289|gb|EEQ64155.1| fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter pullorum MIT 98-5489]
          Length = 209

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
            V+  C+ C    C +VCPVDCFY   + + +H  + CI CG C   CP  A
Sbjct: 62  AVSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|296533719|ref|ZP_06896269.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957]
 gi|296265941|gb|EFH12016.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957]
          Length = 198

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCPV CFY   + + +H  D CI CG C   CP  A
Sbjct: 51  ISMACMHCTDAPCAAVCPVSCFYTTADAIVLHDKDLCIGCGYCFYACPFGA 101


>gi|317478673|ref|ZP_07937828.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905184|gb|EFV26983.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG+ +  I P+ C +CG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEGDIY-HIDPETCTECGTCADVCPSEAIHP 54


>gi|315651987|ref|ZP_07904989.1| ferredoxin [Eubacterium saburreum DSM 3986]
 gi|315485816|gb|EFU76196.1| ferredoxin [Eubacterium saburreum DSM 3986]
          Length = 55

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    +G+    I  D CIDCG C   CP +AI
Sbjct: 1  MAYTITDKCVSCGT--CEGECPVSAISQGDTQYNIDADACIDCGTCASVCPTEAI 53


>gi|153207582|ref|ZP_01946265.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212217980|ref|YP_002304767.1| electron transport complex protein [Coxiella burnetii CbuK_Q154]
 gi|120576550|gb|EAX33174.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212012242|gb|ACJ19622.1| electron transport complex protein [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I  D 
Sbjct: 80  IAFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCI--DM 135

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           +    L      + A QW +   KK+   S  K +  ++  E      P
Sbjct: 136 KIIAPLTPHEKKQKAQQWRSRYEKKQKRLSLHKAEQRRKHQEAKLVNTP 184


>gi|226323506|ref|ZP_03799024.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
 gi|225208190|gb|EEG90544.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV     G + + I    C+DCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSCGA--CESECPVGAISMGADHMQIDASACVDCGACESACPTGAISAE 56


>gi|308271987|emb|CBX28595.1| hypothetical protein N47_G39190 [uncultured Desulfobacterium sp.]
          Length = 1029

 Score = 42.7 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            V ++ C  C    CV VCP    F   + +  I P +C  CGVC  ECP  AI+
Sbjct: 956  VDSKKCAAC--LICVRVCPFGVPFINADGYSEIDPSKCHGCGVCASECPAKAIQ 1007


>gi|212696414|ref|ZP_03304542.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
          7454]
 gi|256545289|ref|ZP_05472653.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325849213|ref|ZP_08170664.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676586|gb|EEB36193.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
          7454]
 gi|256398970|gb|EEU12583.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325480213|gb|EGC83280.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 58

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI P
Sbjct: 1  MAYRIDENTCISCGS--CEGECPVQAIEQGDAAYEIDEDACIDCGSCAAVCPVEAISP 56


>gi|119992|sp|P00197|FER_CLOSM RecName: Full=Ferredoxin
 gi|65699|pir||FECLCE ferredoxin 2[4Fe-4S] - Clostridium sp
          Length = 55

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C    C   CPV+   E +    I  D+CIDCG C   CPVDAI
Sbjct: 1  AYKITDGCINCGA--CEPECPVEAISESDAVRVIDADKCIDCGACANTCPVDAI 52


>gi|288925659|ref|ZP_06419591.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|315606445|ref|ZP_07881460.1| ferredoxin [Prevotella buccae ATCC 33574]
 gi|288337597|gb|EFC75951.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|315251851|gb|EFU31825.1| ferredoxin [Prevotella buccae ATCC 33574]
          Length = 55

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C++ CPV    EG+ + +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CIDECPVGAISEGDIY-SINPDACTECGTCADVCPNEAIS 53


>gi|238018929|ref|ZP_04599355.1| hypothetical protein VEIDISOL_00789 [Veillonella dispar ATCC
          17748]
 gi|313892975|ref|ZP_07826552.1| ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
 gi|237864413|gb|EEP65703.1| hypothetical protein VEIDISOL_00789 [Veillonella dispar ATCC
          17748]
 gi|313442328|gb|EFR60743.1| ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
          Length = 54

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV    EGE    I+ D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKCGS--CASVCPVSAISEGETKYEIN-DTCIDCGSCESVCPVSVISAE 54


>gi|254166869|ref|ZP_04873723.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289596256|ref|YP_003482952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aciduliprofundum boonei T469]
 gi|197624479|gb|EDY37040.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289534043|gb|ADD08390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aciduliprofundum boonei T469]
          Length = 62

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CV  CPV+C +  E  + I  D+CI CG C   CPV AI  D
Sbjct: 17 CVGSCPVNCMFLDETIVRIDEDKCIKCGFCIRACPVGAISAD 58


>gi|254167532|ref|ZP_04874384.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197623795|gb|EDY36358.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
          Length = 62

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 24/42 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CV  CPV+C +  E  + I  D+CI CG C   CPV AI  D
Sbjct: 17 CVGSCPVNCMFLDETIVRIDEDKCIKCGFCIRACPVGAISAD 58


>gi|224371439|ref|YP_002605603.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
 gi|223694156|gb|ACN17439.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
          Length = 122

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 22/115 (19%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++  E C  C+   C++ C V+     E+   I  DECI CGVC   CP +A++ D E
Sbjct: 1   MPWINKELCTGCQ--TCIDECSVEAISMEEDIAFIDEDECIRCGVCHDVCPENAVRHDGE 58

Query: 61  PGLE------LWLK--INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
              E      +W K  +  EY   + N  TK++ L          ++ +++F+ N
Sbjct: 59  RIPEEVQSNLIWAKKLLTHEY---YSNDKTKQKQLI---------ERLQRFFTKN 101


>gi|291535976|emb|CBL09088.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis M50/1]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAHLKRP 151


>gi|317133102|ref|YP_004092416.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ethanoligenens harbinense YUAN-3]
 gi|315471081|gb|ADU27685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ethanoligenens harbinense YUAN-3]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +   CI C    C   CPV C  EG+    I    C+DCG C   CPV A K
Sbjct: 1  MAYKIGSECISCGA--CASECPVSCISEGDGIYVIDEATCVDCGTCATVCPVAAPK 54


>gi|289191613|ref|YP_003457554.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938063|gb|ADC68818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 151

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C++  C E+CPVD  Y  E    +  + CI CG+C   CP+ AI
Sbjct: 42 CMQCENAPCKEICPVDAIYLKEGIPIVDKERCIACGMCAIACPIGAI 88


>gi|167768244|ref|ZP_02440297.1| hypothetical protein CLOSS21_02800 [Clostridium sp. SS2/1]
 gi|317497791|ref|ZP_07956103.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167709768|gb|EDS20347.1| hypothetical protein CLOSS21_02800 [Clostridium sp. SS2/1]
 gi|291560258|emb|CBL39058.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [butyrate-producing bacterium
          SSC/2]
 gi|316894904|gb|EFV17074.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 56

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+++ CI C    C   CP     EG+    I  D C++CG C   CP  AI 
Sbjct: 1  MAYVISDACISCGA--CEGTCPAGAISEGDGQYVIDADTCMECGACADGCPAGAIS 54


>gi|145218852|ref|YP_001129561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205016|gb|ABP36059.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 522

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C  C+   CV++CPV+  ++ ++  +      CI C  C   CP +A+  D E 
Sbjct: 51  YFTVLRCNHCEEPPCVDICPVEALHKRDDGIVDFDSRRCIGCKACAQACPYNAVYIDPES 110

Query: 62  G 62
           G
Sbjct: 111 G 111


>gi|39996541|ref|NP_952492.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|39983422|gb|AAR34815.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|298505557|gb|ADI84280.1| ferredoxin family protein [Geobacter sulfurreducens KN400]
          Length = 94

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + E C+ C    CVEVCP   F  EG     +  D+C++CG C   CP  AI+ D   G
Sbjct: 16 IGEKCVGCGM--CVEVCPHQVFRLEGSKAEVVARDDCMECGACAVNCPASAIRVDAGVG 72


>gi|240171952|ref|ZP_04750611.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium kansasii
          ATCC 12478]
          Length = 527

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSA 90
          L I P  C+DCG C   CPV AI PD+  E     +++IN+ Y  + P        LP  
Sbjct: 2  LYIDPVACVDCGACVSACPVGAIAPDSRLESRQLPFVEINASYYPKRP----ADAKLPPT 57

Query: 91 AKM 93
          +K+
Sbjct: 58 SKL 60


>gi|77460730|ref|YP_350237.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77384733|gb|ABA76246.1| putative electron transpor-related protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 404

 Score = 42.7 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+    CI C  T C++ CP+D        +  +  DEC  C +C   CPVD I+   
Sbjct: 73  VAYIREAECIGC--TKCIQACPIDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIEMHP 130

Query: 60  EP--------GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
            P        GL + L                +E    AAK D  +Q++E+
Sbjct: 131 LPLGTLPVVGGLAISL----------------EEQQARAAKRDHARQRFER 165


>gi|291538469|emb|CBL11580.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis XB6B4]
          Length = 482

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAHLKRP 151


>gi|254424789|ref|ZP_05038507.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196192278|gb|EDX87242.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 74

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C +EG        ++  I  D CIDCG+C   CPV+ AI P+ +P L+
Sbjct: 14 ADCVDACPVACIHEGPGKNKKGTDWYWIDFDTCIDCGICLQVCPVEGAILPEEKPELQ 71


>gi|257792589|ref|YP_003183195.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476486|gb|ACV56806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    CV+ CP  C +  +  + +HPD+CI C  C   CP  A++  TE
Sbjct: 57  GCHHCAEAPCVDACPTGCLFTDDEHVGVHPDKCIGCRNCVLACPYGAVEIVTE 109


>gi|212637708|ref|YP_002314233.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559192|gb|ACJ31646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 559

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V TE+C LC    CV  CP     +G +  A+H    +C+ CG+C+  CP   I
Sbjct: 424 VNTESCTLC--MSCVATCPTGALTDGGDLPALHFVEQDCVQCGLCDAGCPEKVI 475


>gi|253582598|ref|ZP_04859819.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
 gi|251835468|gb|EES64008.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C + CPVD      N   I P++CI CG+C  +CP +AIK + +
Sbjct: 224 CKKACPVDAITVENNLAKIDPEKCIQCGLCAAKCPTNAIKSEIK 267



 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 14  HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           H DC  VCPV+     +  +A ++ D+CI CG+C+  CP   I
Sbjct: 146 HGDCERVCPVNAIKVNDKGIAEVNEDKCISCGLCQKACPKKVI 188


>gi|257470438|ref|ZP_05634529.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064646|ref|ZP_07929131.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313690322|gb|EFS27157.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C + CPVD      N   I P++CI CG+C  +CP +AIK + +
Sbjct: 224 CKKACPVDAITVENNLAKIDPEKCIQCGLCAAKCPTNAIKSEIK 267



 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 14  HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           H DC  VCPV+     +  +A +  D+CI CG+C+  CP   I
Sbjct: 146 HGDCERVCPVNAIKVNDKGIAEVDEDKCISCGLCQKACPKKVI 188


>gi|167752846|ref|ZP_02424973.1| hypothetical protein ALIPUT_01107 [Alistipes putredinis DSM
          17216]
 gi|167659915|gb|EDS04045.1| hypothetical protein ALIPUT_01107 [Alistipes putredinis DSM
          17216]
          Length = 56

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++ + C+ C    C++ CPV+    G+ ++ I PD+CIDCG C   CP +AIKP+
Sbjct: 1  MAYKISPDLCVACGT--CIDECPVEAISAGDVYV-IDPDKCIDCGTCAGVCPSEAIKPE 56


>gi|148657272|ref|YP_001277477.1| cyclic nucleotide-binding protein [Roseiflexus sp. RS-1]
 gi|148569382|gb|ABQ91527.1| cyclic nucleotide-binding protein [Roseiflexus sp. RS-1]
          Length = 482

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK------P 57
           + + C  C+   +CVE CP D     E+      D C  CG C P CP  A+       P
Sbjct: 357 IADACRQCRVGAECVEACPEDAIVWNESGALFITDACNGCGACVPACPYHAVDMRSIAPP 416

Query: 58  DTEPGLELWLKI 69
              P   LW ++
Sbjct: 417 HQSPLWGLWQRL 428


>gi|163749862|ref|ZP_02157107.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
 gi|161330376|gb|EDQ01355.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
          Length = 561

 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V T++C LC    CV  CP     +G +  A++    +C+ CG+CE  CP +AI   ++ 
Sbjct: 426 VNTDSCTLC--LSCVSTCPTQALTDGGDKPALNFLEQDCVQCGLCEKACPENAISLTSQM 483

Query: 62  GLE 64
            L+
Sbjct: 484 NLD 486


>gi|89074879|ref|ZP_01161329.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           sp. SKA34]
 gi|90578566|ref|ZP_01234376.1| putative formate dehydrogenase, iron-sulfur subunit [Vibrio
           angustum S14]
 gi|89049276|gb|EAR54839.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           sp. SKA34]
 gi|90439399|gb|EAS64580.1| putative formate dehydrogenase, iron-sulfur subunit [Vibrio
           angustum S14]
          Length = 205

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK-PDTEPG 62
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A + P  E  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSQTEDGIVQHDKDLCIGCGYCLFACPFGAPQFPKQEAF 112

Query: 63  LELWLKINSEYATQWPN 79
            E        Y +  PN
Sbjct: 113 AERGKMDKCTYCSGGPN 129


>gi|295094467|emb|CBK83558.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           sp. ART55/1]
          Length = 484

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C + C       G +   I P +C +CG C   CP +AI     P
Sbjct: 94  YVVTDNCQKCMGRACQQACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAIADLMRP 152



 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 17  CVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAI 55
           C++ CPV      EN      I  D+CIDCG C  +CP  AI
Sbjct: 153 CIKSCPVGAISVAENGTGIAVIDKDKCIDCGSCIHKCPFGAI 194


>gi|296137382|ref|YP_003644624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|294341676|emb|CAZ90095.1| formate dehydrogenase iron-sulfur subunit [Thiomonas sp. 3As]
 gi|295797504|gb|ADG32294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPV CFY     + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCMAVCPVSCFYRTPEGVVLHDKDVCIGCGYCSYACPFGA 101


>gi|219856694|ref|YP_002473816.1| hypothetical protein CKR_3351 [Clostridium kluyveri NBRC 12016]
 gi|219570418|dbj|BAH08402.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 57

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ C+ C    C   CPV+C  +G+    I    CIDCG C   CPV A
Sbjct: 1  MAYKITDACMNCGA--CASECPVECISQGDTQFLIDDGTCIDCGSCASVCPVGA 52


>gi|257065142|ref|YP_003144814.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792795|gb|ACV23465.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C +  C++VCP    ++ +N  + ++ + CI CG C   CP +A K D E
Sbjct: 61  VYYVSTSCQHCGNPACIKVCPTGAMHKEDNGAVLVNTERCIGCGYCHLSCPYNAPKVDRE 120

Query: 61  PG 62
            G
Sbjct: 121 AG 122


>gi|153005941|ref|YP_001380266.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029514|gb|ABS27282.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 263

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
           ++ V + C  CK T CV+VCPV   Y  ++ L  +  D CI CG C   CP  +  + P+
Sbjct: 129 SFFVPKMCNHCKETPCVQVCPVGASYRTQDGLVLVDGDRCIGCGYCVQACPYGSRFLSPE 188

Query: 59  TE 60
           T 
Sbjct: 189 TH 190


>gi|298245739|ref|ZP_06969545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553220|gb|EFH87085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 601

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 22/67 (32%)

Query: 9   CILCKHTDCVEVCPVDCF--------------------YEGENFLAIHPDECIDCGVCEP 48
           CILC  + CV++CP DC                     +EG   + I  ++CI CG+C  
Sbjct: 513 CILC--SGCVDICPYDCISMEGLSRVVKGDPMHQGTSTWEGGADMIIDEEKCIRCGLCVV 570

Query: 49  ECPVDAI 55
            CP DAI
Sbjct: 571 RCPTDAI 577


>gi|254458516|ref|ZP_05071941.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084824|gb|EDZ62111.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 202

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           + Y ++  C+ C    C +VCP DCFY  E+ + +H  E CI C  C   CP  A
Sbjct: 51  LEYSLSIACMHCTDAPCEQVCPTDCFYIREDGIVLHDKEKCIGCAYCLYACPFGA 105


>gi|89895375|ref|YP_518862.1| iron-sulfur protein [Desulfitobacterium hafniense Y51]
 gi|89334823|dbj|BAE84418.1| iron-sulfur protein [Desulfitobacterium hafniense Y51]
          Length = 162

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T V    C  C+   CV+VCP    Y+ E  + ++ + CI C +C   CP  +I   TE
Sbjct: 56  TTVALTQCRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCARACPFGSITMTTE 114


>gi|260437208|ref|ZP_05791024.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810521|gb|EFF69726.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
          Length = 481

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C+  C       GE+   I   +C +CG+C   CP +AI     P
Sbjct: 92  SYTVTDNCQNCPGKACINACKFGAISTGEHHSKIDGSKCKECGMCAKACPYNAIAHLKRP 151


>gi|188579717|ref|YP_001923162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179343215|gb|ACB78627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 665

 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I        
Sbjct: 507 TEDCTLC--LSCVGACPTHALTDSADRPLLAFEESLCVQCGLCAATCPEDVIDLTPRIDF 564

Query: 64  ELW 66
           E W
Sbjct: 565 EAW 567



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        T C++VCP        + +AI P  C  CG C   CP  A      P 
Sbjct: 258 LCAHSRSRITGCTRCLDVCPTGAIASAGDSVAIDPYICAGCGSCAAVCPTGAANYALPPA 317

Query: 63  LELWLKINS 71
             L  ++ S
Sbjct: 318 DALMRRLRS 326


>gi|189485409|ref|YP_001956350.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170287368|dbj|BAG13889.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 57

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN C+ C    C   CPV    + E+   I+ D+C  CGVCE  CPV AI
Sbjct: 1  MAYQINENACVGCGA--CAGSCPVSAIEQKEDKYTINSDKCKGCGVCESTCPVSAI 54


>gi|121535200|ref|ZP_01667015.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306191|gb|EAX47118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 356

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+T+NC  C+   C++ CP +   E +    I  ++CI CG C   C  DA+K D
Sbjct: 191 VLTDNCRFCQK--CLKWCPQEAIIEKDGKAYIMTEKCIGCGECLAVCRFDAVKYD 243


>gi|115523011|ref|YP_779922.1| thiamine pyrophosphate binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115516958|gb|ABJ04942.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Rhodopseudomonas palustris BisA53]
          Length = 605

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +VTE C  C+   C+ + CP     D ++EG + + I P  CI C +C   C +D IKP
Sbjct: 543 IVTEQCTACQ--SCMNLGCPALTWSDQWFEGRHRVQIDPALCIGCTLCAQVCTIDCIKP 599


>gi|317056017|ref|YP_004104484.1| ferredoxin [Ruminococcus albus 7]
 gi|315448286|gb|ADU21850.1| ferredoxin [Ruminococcus albus 7]
          Length = 56

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y ++++CI C    C   CPV    EG+    I    C+DCG C   CPV A
Sbjct: 1  MAYKISDDCIGCGA--CAAECPVGAISEGDGKYVIDASACLDCGACAGTCPVGA 52


>gi|156742845|ref|YP_001432974.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234173|gb|ABU58956.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 482

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C+   +CVE CP D     ++   +  D C  CG C P CP DA+
Sbjct: 357 VANACRQCRVGAECVEACPEDAIVWNDSGALMITDACTGCGECVPACPYDAV 408


>gi|294632939|ref|ZP_06711498.1| ferredoxin-NADP reductase [Streptomyces sp. e14]
 gi|292830720|gb|EFF89070.1| ferredoxin-NADP reductase [Streptomyces sp. e14]
          Length = 514

 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/25 (64%), Positives = 16/25 (64%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKP 57
          L I P  CIDCG C   CPVDAI P
Sbjct: 2  LYIDPKSCIDCGACADACPVDAISP 26


>gi|290967991|ref|ZP_06559540.1| ferredoxin [Megasphaera genomosp. type_1 str. 28L]
 gi|290781897|gb|EFD94476.1| ferredoxin [Megasphaera genomosp. type_1 str. 28L]
          Length = 54

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +V+++ C++C    C   CP     EGE+   I  D CIDCG CE  CP  AI  +
Sbjct: 2  HVISDECVMCG--SCAATCPTGAIEEGESKYVI-TDSCIDCGACESVCPTGAISAE 54


>gi|78184657|ref|YP_377092.1| ferredoxin [Synechococcus sp. CC9902]
 gi|78168951|gb|ABB26048.1| ferredoxin [Synechococcus sp. CC9902]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C  +G        +F  I+ D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCVDACPVACIDQGSGKNSKGTDFYVINFDTCIDCGICLQVCPVEGAILAEERPDLQ 71


>gi|300245949|gb|ADJ94032.1| putative benzoate-degrading protein BamI [Clostridia bacterium
           enrichment culture clone BF]
          Length = 365

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           CVEVCPV+      +F  +    CI CGVC P+CP +A K      L L   +N      
Sbjct: 297 CVEVCPVNALTMEGDFPVVDEGWCIGCGVCIPKCPTEAAK------LRLRTDVNQSPTAT 350

Query: 77  WPNITTK 83
           +  + TK
Sbjct: 351 FKELYTK 357


>gi|24375983|ref|NP_720026.1| iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
 gi|24350982|gb|AAN57470.1|AE015883_1 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 558

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 423 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACP--------EK 472

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 473 VISLTPQINFDKAARQQQHTLKEEA 497


>gi|163814709|ref|ZP_02206098.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
 gi|158450344|gb|EDP27339.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
          Length = 484

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C + C       G +   I P +C +CG C   CP +AI     P
Sbjct: 94  YVVTDNCQKCMGRACQQACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAIADLMRP 152



 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 17  CVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAI 55
           C++ CPV      EN      I  D+CIDCG C  +CP  AI
Sbjct: 153 CIKSCPVGAISVAENGTGIAVIDKDKCIDCGSCIHKCPFGAI 194


>gi|77918639|ref|YP_356454.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM
           2380]
 gi|77544722|gb|ABA88284.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 1180

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 27  YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI--NSEYATQWPNITTK 83
           +EG  F L + P++C+ CG+C   CPV   +  +   L +  K+    + A  W      
Sbjct: 733 FEGNKFTLQVAPEDCVGCGICVEVCPVKDRQDASRKALNMQFKVPLREQEAVNWDFFMAL 792

Query: 84  KESLPSAAKMDGVK 97
            E+ P+  K D +K
Sbjct: 793 PETDPAKVKRDTLK 806


>gi|99080237|ref|YP_612391.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036517|gb|ABF63129.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 652

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 10  ILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +LC H        T C++ CP        + +AI P  C  CG C   CP  AI  D  P
Sbjct: 269 LLCAHSRARQTGCTRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSGAITYDAPP 328

Query: 62  GLELWLKINS 71
              L+L+I +
Sbjct: 329 TESLFLRIQT 338



 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     + E+   L    D C+ CG+C   CP DAI
Sbjct: 499 VDTDACTLC--LSCVSLCPSGALGDNEDLPQLRFQEDACLQCGLCANACPEDAI 550


>gi|317405896|gb|EFV86178.1| ferredoxin-NADP oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 415

 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D      N   + PD C  C  C P CP  +I
Sbjct: 18 EICIRC--NTCEETCPIDAITHDSNNYVVDPDICNSCMACVPPCPTGSI 64



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I P+ CI C  CE  CP+DAI  D+
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDS 39


>gi|302670217|ref|YP_003830177.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
 gi|302394690|gb|ADL33595.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
          Length = 490

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT+NC  C    C+  C       G+  + I P +C +CG C   CP  AI
Sbjct: 95  AYSVTDNCRFCMGKACLNSCAFGAISPGDTHMHIDPAKCKECGKCAAACPYSAI 148


>gi|291548248|emb|CBL21356.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus sp. SR1/5]
          Length = 56

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CP +   +G+    I  D C+DCG C   CPV AI  +
Sbjct: 1  MAYVISDECVSCGT--CEGECPNEAISQGDEHYVIDADACVDCGTCAEACPVGAISAE 56


>gi|317488877|ref|ZP_07947407.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832690|ref|ZP_08165453.1| putative electron transport protein HydN [Eggerthella sp. HGA1]
 gi|316911951|gb|EFV33530.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485829|gb|EGC88290.1| putative electron transport protein HydN [Eggerthella sp. HGA1]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    CV+ CP  C +  +  + +HPD+CI C  C   CP  A++  TE
Sbjct: 51  GCHHCAEAPCVDACPTGCLFTDDEHVGVHPDKCIGCRNCVLACPYGAVEIVTE 103


>gi|291530322|emb|CBK95907.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Eubacterium siraeum 70/3]
 gi|291557135|emb|CBL34252.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Eubacterium siraeum V10Sc8a]
          Length = 56

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y ++++CI C    C   CPV+   EG+    I  D C+ CG C   CPV A
Sbjct: 1  MAYKISDDCISCGA--CAAQCPVEAISEGDGKYVIDADTCVSCGACAGVCPVGA 52


>gi|197118659|ref|YP_002139086.1| ferredoxin-like protein [Geobacter bemidjiensis Bem]
 gi|253700567|ref|YP_003021756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
 gi|197088019|gb|ACH39290.1| ferredoxin-related protein [Geobacter bemidjiensis Bem]
 gi|251775417|gb|ACT17998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
          Length = 55

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M + +++ CI C   D  + CPV+   E  +   I  D CIDCG C   CPV AI  
Sbjct: 1  MAHTISDECINCGACD--DSCPVNAISEAGDKRTIAADTCIDCGACVDTCPVSAISA 55


>gi|116070524|ref|ZP_01467793.1| ferredoxin [Synechococcus sp. BL107]
 gi|116065929|gb|EAU71686.1| ferredoxin [Synechococcus sp. BL107]
          Length = 74

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C  +G        +F  I+ D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCVDACPVACIDQGNGKNTKGTDFYVINFDTCIDCGICLQVCPVEGAILAEERPDLQ 71


>gi|332879175|ref|ZP_08446873.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682833|gb|EGJ55732.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 267

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++ T +CI C    C++VCP+  F + +  L ++ + CI C +C   CP D+I
Sbjct: 184 VVFLNTTSCIKC--GKCMKVCPMSIFQKSDVLLPMNEENCIQCQLCTKHCPTDSI 236


>gi|18311429|ref|NP_563363.1| ferredoxin [Clostridium perfringens str. 13]
 gi|110800097|ref|YP_697135.1| putative ferredoxin [Clostridium perfringens ATCC 13124]
 gi|168206841|ref|ZP_02632846.1| putative ferredoxin [Clostridium perfringens E str. JGS1987]
 gi|168211231|ref|ZP_02636856.1| putative ferredoxin [Clostridium perfringens B str. ATCC 3626]
 gi|168214736|ref|ZP_02640361.1| putative ferredoxin [Clostridium perfringens CPE str. F4969]
 gi|168217940|ref|ZP_02643565.1| putative ferredoxin [Clostridium perfringens NCTC 8239]
 gi|169344118|ref|ZP_02865101.1| putative ferredoxin [Clostridium perfringens C str. JGS1495]
 gi|182626000|ref|ZP_02953763.1| putative ferredoxin [Clostridium perfringens D str. JGS1721]
 gi|20141076|sp|P22846|FER_CLOPE RecName: Full=Ferredoxin
 gi|18146113|dbj|BAB82153.1| ferredoxin [Clostridium perfringens str. 13]
 gi|110674744|gb|ABG83731.1| putative ferredoxin [Clostridium perfringens ATCC 13124]
 gi|169297729|gb|EDS79828.1| putative ferredoxin [Clostridium perfringens C str. JGS1495]
 gi|170661735|gb|EDT14418.1| putative ferredoxin [Clostridium perfringens E str. JGS1987]
 gi|170710749|gb|EDT22931.1| putative ferredoxin [Clostridium perfringens B str. ATCC 3626]
 gi|170713813|gb|EDT25995.1| putative ferredoxin [Clostridium perfringens CPE str. F4969]
 gi|177908707|gb|EDT71218.1| putative ferredoxin [Clostridium perfringens D str. JGS1721]
 gi|182380036|gb|EDT77515.1| putative ferredoxin [Clostridium perfringens NCTC 8239]
          Length = 56

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A
Sbjct: 1  MAYKILDTCVSCGA--CAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGA 52


>gi|296109957|ref|YP_003616906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434771|gb|ADG13942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 252

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CVE CP+DC Y+    + I  D+C+ C +CE  CP  AIK
Sbjct: 201 CVEECPIDCIYDIGGVVEIDNDKCVLCRICEEVCPTKAIK 240



 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 10 ILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
          I CK   C + CPVD     +   A+   D CI C +C   CPVDAI
Sbjct: 42 ICCKCNLCYKECPVDAIERAKVKRAVKIKDNCIKCEICAKTCPVDAI 88


>gi|32265726|ref|NP_859758.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter hepaticus ATCC 51449]
 gi|32261774|gb|AAP76824.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter hepaticus ATCC 51449]
          Length = 209

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
            V+  C+ C    C +VCPVDCFY   + + +H  + CI CG C   CP  A
Sbjct: 62  AVSIACMHCADAPCAKVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 113


>gi|310830102|ref|YP_003962459.1| Ferredoxin [Eubacterium limosum KIST612]
 gi|308741836|gb|ADO39496.1| Ferredoxin [Eubacterium limosum KIST612]
          Length = 56

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C + CPV+   EG +   I    C DCG C  +CPV+AI P+
Sbjct: 1  MAYKITDECIACGS--CADQCPVEAISEG-SIYEIDEALCTDCGACADQCPVEAIVPE 55


>gi|119872881|ref|YP_930888.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674289|gb|ABL88545.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    CV  CP   F Y     + +  D CIDCG+C   CPV+A+K  + P
Sbjct: 84  CIWCGM--CVRSCPATAFEYVERKSIRVRYDRCIDCGLCNAVCPVEAVKMPSLP 135



 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V   C LC    CV VCP D        L + P  CI CGVC  +CP   IK
Sbjct: 252 VAGGCTLCGA--CVNVCPTDALSIKGFELRLTPALCIACGVCVEKCPEKVIK 301


>gi|291515570|emb|CBK64780.1| 4Fe-4S binding domain [Alistipes shahii WAL 8301]
          Length = 55

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T++C+ C    C+  CPV+    G+ ++ I  D+CIDCG C   CP +AI
Sbjct: 1  MAYKITDSCVACGS--CIGECPVEAISAGDIYV-IDADKCIDCGTCAGVCPSEAI 52


>gi|257466098|ref|ZP_05630409.1| hydrogenase, Fe-only [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917255|ref|ZP_07913495.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691130|gb|EFS27965.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 652

 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C     +  +FL      C  CG C   CPV AI
Sbjct: 217 LKFKITEKCIGC--TACARVCPVQCITGAPKKRHFL--DTSRCTHCGQCVSACPVGAI 270


>gi|225018512|ref|ZP_03707704.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
 gi|224948713|gb|EEG29922.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
          Length = 203

 Score = 42.4 bits (98), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +T++CI C    C  +CP  C   G  ++ I    C+ CG+C+ +CPV AI+   E
Sbjct: 149 FQITDSCIECGR--CRRICPQQCIEPGSPYV-IRQQNCLHCGLCQEQCPVQAIERKGE 203


>gi|260772826|ref|ZP_05881742.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio metschnikovii
           CIP 69.14]
 gi|260611965|gb|EEX37168.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio metschnikovii
           CIP 69.14]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF + E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVKTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|320640863|gb|EFX10351.1| putative polyferredoxin [Escherichia coli O157:H7 str. G5101]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69


>gi|257452106|ref|ZP_05617405.1| hydrogenase, Fe-only [Fusobacterium sp. 3_1_5R]
 gi|317058652|ref|ZP_07923137.1| hydrogenase [Fusobacterium sp. 3_1_5R]
 gi|313684328|gb|EFS21163.1| hydrogenase [Fusobacterium sp. 3_1_5R]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C     +  +FL      C  CG C   CPV AI
Sbjct: 217 LKFKITEKCIGC--TACARVCPVQCITGAPKKRHFL--DTSRCTHCGQCVSACPVGAI 270


>gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
 gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
          Length = 526

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y + E+CI C    C  +CP +    E      I+ D+CI CG C+  CP++AI
Sbjct: 470 LNYTIGEDCIGCG--KCKRLCPNEAIAGEARKKHEINQDKCIKCGQCKDNCPINAI 523


>gi|87302718|ref|ZP_01085529.1| ferredoxin [Synechococcus sp. WH 5701]
 gi|87282601|gb|EAQ74559.1| ferredoxin [Synechococcus sp. WH 5701]
          Length = 74

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C + G+       +F  I+ D CIDCG+C   CPV  AI P+    L+
Sbjct: 14 ADCVDACPVACIHPGQGANSKGTSFYWINFDTCIDCGICLQVCPVSGAILPEERADLQ 71


>gi|229588699|ref|YP_002870818.1| putative electron transpor-like protein [Pseudomonas fluorescens
           SBW25]
 gi|229360565|emb|CAY47422.1| putative electron transpor-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 387

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 73  VAYIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIIDECTGCDLCVAPCPVDCIE 127


>gi|325833701|ref|ZP_08166116.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325485241|gb|EGC87711.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  YVVTENCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+ ++ C++ ++       C + CP    +   N L +  + C+ CG C   CPV+A+ P
Sbjct: 20 YLASDRCVVVRNRHASCAKCADACPTGSVFAANNVLELDGEGCVACGACTTVCPVEALIP 79


>gi|320667607|gb|EFX34522.1| putative polyferredoxin [Escherichia coli O157:H7 str. LSU-61]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69


>gi|261403301|ref|YP_003247525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370294|gb|ACX73043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 154

 Score = 42.0 bits (97), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C++  C E+CPVD  Y  +    +  ++CI CG+C   CP+ AI
Sbjct: 42 CMQCENAPCKEICPVDAIYLKDGIPIVSKEKCIACGMCALACPIGAI 88


>gi|257790390|ref|YP_003180996.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|257474287|gb|ACV54607.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  YVVTENCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+ ++ C++ ++       C + CP    +   N L +  + C+ CG C   CPV+A+ P
Sbjct: 20 YLASDRCVVVRNRHASCAKCADACPTGSVFAANNVLELDGEGCVACGACTTVCPVEALIP 79


>gi|310777828|ref|YP_003966161.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747151|gb|ADO81813.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CV  CPVD      N   I P++CI CG+C  +CP +AI  + +
Sbjct: 224 CVRACPVDAIDLNNNLAKIDPEKCIQCGLCAIKCPTNAITSEVK 267


>gi|295111792|emb|CBL28542.1| Uncharacterized Fe-S center protein [Synergistetes bacterium SGP1]
          Length = 370

 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V  E CI C    CV +C  D  +      A I  D C+ CG C   CPVDA+ PD + 
Sbjct: 192 HVEQEKCICCGR--CVRICAHDAPHVTPGRGATIDHDRCVGCGRCIGACPVDAVAPDYDE 249

Query: 62  GLEL 65
             ++
Sbjct: 250 AFDI 253


>gi|149194135|ref|ZP_01871233.1| HYDROGENASE-3 SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
 gi|149136088|gb|EDM24566.1| HYDROGENASE-3 SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
          Length = 187

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+   C  C    C  VCPV     GE+ + ++ + CI C +C   CP  AI+P  E
Sbjct: 48  MYGVMPNQCRQCDDAPCANVCPVGALRFGEDEIELYEEICIGCKLCSIACPFGAIRPAAE 107


>gi|164687084|ref|ZP_02211112.1| hypothetical protein CLOBAR_00710 [Clostridium bartlettii DSM
          16795]
 gi|164603969|gb|EDQ97434.1| hypothetical protein CLOBAR_00710 [Clostridium bartlettii DSM
          16795]
          Length = 56

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y++ + CI C    C   CPV+C   G++   I  D CI+CG C   CPV+A
Sbjct: 1  MAYIIGDACISCGA--CESECPVECISAGDDKYVIDADSCIECGSCADVCPVEA 52


>gi|320646306|gb|EFX15233.1| putative polyferredoxin [Escherichia coli O157:H- str. 493-89]
 gi|320651811|gb|EFX20191.1| putative polyferredoxin [Escherichia coli O157:H- str. H 2687]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69


>gi|303229419|ref|ZP_07316209.1| ferredoxin [Veillonella atypica ACS-134-V-Col7a]
 gi|303231397|ref|ZP_07318131.1| ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302513993|gb|EFL56001.1| ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302515955|gb|EFL57907.1| ferredoxin [Veillonella atypica ACS-134-V-Col7a]
          Length = 54

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV    EGE    I+ D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKCGS--CASVCPVAAISEGETKYEIN-DTCIDCGSCESVCPVSVISAE 54


>gi|269102696|ref|ZP_06155393.1| formate dehydrogenase-O iron-sulfur subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162594|gb|EEZ41090.1| formate dehydrogenase-O iron-sulfur subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK-PDTEPG 62
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A + P  +  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSQTEDGIVQHNKDLCIGCGYCLFACPFGAPQFPKQQAF 112

Query: 63  LELWLKINSEYATQWPNI--TTKKESL 87
            E        Y +  PN    ++KE L
Sbjct: 113 AERGKMDKCTYCSGGPNTEPGSEKERL 139


>gi|317488807|ref|ZP_07947340.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316912112|gb|EFV33688.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 3  YVVTENCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+ ++ C++ ++       C + CP    +   N L +  + C+ CG C   CPV+A+ P
Sbjct: 20 YLASDRCVVVRNRHASCAKCADACPTGSVFAANNVLELDGEGCVACGACTTVCPVEALIP 79


>gi|307729116|ref|YP_003906340.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1003]
 gi|307583651|gb|ADN57049.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1003]
          Length = 412

 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     EN   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAITHDENNYVVKADVCNGCMACVPPCPTGAI 64



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|240145814|ref|ZP_04744415.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
 gi|257202092|gb|EEV00377.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
          Length = 348

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAHLKRP 151


>gi|16330286|ref|NP_441014.1| ferredoxin [Synechocystis sp. PCC 6803]
 gi|1652775|dbj|BAA17694.1| ferredoxin [Synechocystis sp. PCC 6803]
          Length = 75

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-------ECIDCGVCEPECPVD-AI 55
          +VTE C      DCVE CPV C + G+    I  D        CIDCG+C   CPV+ AI
Sbjct: 5  IVTETCE--GVADCVEACPVACIHPGDGKNTIGTDWYWIDFATCIDCGICLQVCPVEGAI 62

Query: 56 KPDTEPGLE 64
           P+  P L+
Sbjct: 63 LPEERPDLQ 71


>gi|225181373|ref|ZP_03734817.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225167954|gb|EEG76761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 54

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MTY +T+ C+ C    C++ CP D   EG+ +     D+C +CG+C  ECP DAI
Sbjct: 1  MTYKITDECVACGA--CLDSCPSDAIVEGDVYTI--NDDCAECGLCVDECPSDAI 51


>gi|254491904|ref|ZP_05105083.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224463382|gb|EEF79652.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 194

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCTDAPCQAVCPVDCFYTTDDGVVLHDKDICIGCGYCFYACPFGA 101


>gi|327310505|ref|YP_004337402.1| 4Fe-4S ferredoxin [Thermoproteus uzoniensis 768-20]
 gi|326946984|gb|AEA12090.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoproteus uzoniensis 768-20]
          Length = 100

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLEL 65
           E C LC+   C  +CP  C+ +  + + +  + C++CG C   CP + I  +    G+ +
Sbjct: 36  EKCRLCEKKPCTYMCPAKCYVQQGDIVVLSTEACLECGTCRVVCPYENIDWNYPRSGMGV 95

Query: 66  WLKIN 70
           W + +
Sbjct: 96  WYRFS 100


>gi|257463022|ref|ZP_05627425.1| hydrogenase, Fe-only [Fusobacterium sp. D12]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C     +  +FL      C  CG C   CPV AI
Sbjct: 217 LKFKITEKCIGC--TACARVCPVKCIAGAPKKRHFL--DTSRCTHCGQCVSACPVGAI 270


>gi|238795930|ref|ZP_04639442.1| hypothetical protein ymoll0001_23270 [Yersinia mollaretii ATCC
           43969]
 gi|238720135|gb|EEQ11939.1| hypothetical protein ymoll0001_23270 [Yersinia mollaretii ATCC
           43969]
          Length = 533

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C H  CV+VCP    Y  +    + ++PD C+ C  C   CP  V  I P T+
Sbjct: 80  SCQHCDHAPCVDVCPTGASYRDKATGIIDVNPDLCVGCQYCIAACPYRVRFIHPVTK 136


>gi|20089906|ref|NP_615981.1| hypothetical protein MA1031 [Methanosarcina acetivorans C2A]
 gi|19914861|gb|AAM04461.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 377

 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ T NC LCK   CV  C V    E  + L I+ ++CI C  C   CP DA++      
Sbjct: 311 FINTSNCKLCKA--CVLNCSVHAIEETGSALKINQEKCIQCYCCRELCPSDAVEIKKSML 368

Query: 63  LELWLKI 69
           L+L  +I
Sbjct: 369 LKLVTRI 375


>gi|150389480|ref|YP_001319529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149949342|gb|ABR47870.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 370

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 5   VTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V EN CI C+   CVE CPVD  +  +    I P+ CI CG C   CP  AI+   +   
Sbjct: 191 VMENLCIGCQM--CVENCPVDAIHMEDKKAVIDPEVCIGCGECITVCPKRAIEVQWKTDA 248

Query: 64  ELWLKINSEYA 74
            ++++  +EYA
Sbjct: 249 NIFVEKMAEYA 259


>gi|126698470|ref|YP_001087367.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|260682591|ref|YP_003213876.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686191|ref|YP_003217324.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|260208754|emb|CBA61609.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212207|emb|CBE02898.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 509

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 17  CVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C  VCP +   ++ EN  A IH D+C++CG C   CP  AI  K    P     ++    
Sbjct: 177 CKSVCPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKM 236

Query: 73  YATQWPNITTKKES 86
           YA   P IT + E+
Sbjct: 237 YAVVAPAITGQVEA 250


>gi|295110160|emb|CBL24113.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus obeum A2-162]
          Length = 501

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+V+  C  C    C++ CP       +    I  D+CI CG C+  CP DAI  +  P
Sbjct: 115 YIVSNMCRGCVAHPCMQACPKGAISMKDGKSYIDQDKCIKCGKCKASCPYDAISHNVRP 173


>gi|318041465|ref|ZP_07973421.1| ferredoxin [Synechococcus sp. CB0101]
          Length = 74

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C         +G  F  I  D CIDCG+C   CPV+ AI P+ +P L+
Sbjct: 14 ADCVDACPVACINPGSGANAKGTGFYWIDFDTCIDCGICLQVCPVEGAIVPEEKPDLQ 71


>gi|254974515|ref|ZP_05270987.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255091906|ref|ZP_05321384.1| iron-dependent hydrogenase [Clostridium difficile CIP 107932]
 gi|255100005|ref|ZP_05328982.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305892|ref|ZP_05350064.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|255313640|ref|ZP_05355223.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516324|ref|ZP_05384000.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649423|ref|ZP_05396325.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|306519504|ref|ZP_07405851.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|328887576|emb|CAJ67726.2| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 496

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 17  CVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C  VCP +   ++ EN  A IH D+C++CG C   CP  AI  K    P     ++    
Sbjct: 164 CKSVCPTNALGFDRENMKAMIHEDKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKM 223

Query: 73  YATQWPNITTKKES 86
           YA   P IT + E+
Sbjct: 224 YAVVAPAITGQVEA 237


>gi|86609930|ref|YP_478692.1| iron-sulfur cluster-binding protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86558472|gb|ABD03429.1| iron-sulfur cluster-binding protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
          Length = 75

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCVE CPV C +       +G ++  I    CIDCG+C   CPV+ AI P+ +P L+
Sbjct: 14 ADCVEACPVACIHPGDTKNAKGTDYFWIEFSTCIDCGICLQVCPVEGAILPEEKPHLQ 71


>gi|237736266|ref|ZP_04566747.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421614|gb|EEO36661.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 329

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 23/45 (51%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C + CPV       N   I P +CI CG+C  +CP  AI  D EP
Sbjct: 224 CAKNCPVGAITVENNLAKIDPAKCISCGICATKCPTKAIVSDVEP 268



 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 14  HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP--VDAIKPDTE 60
           H DC +VCPV      E  +A +  D+CI CG+C+  CP  V A+ P ++
Sbjct: 146 HGDCEKVCPVGAIKVNEKGIAEVDEDKCISCGLCQKACPKKVIAMLPQSK 195


>gi|302339374|ref|YP_003804580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
 gi|301636559|gb|ADK81986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
          Length = 56

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C  C    C   CPV+   E ++   I PD+C  CG C   CPV+AI  D
Sbjct: 1  MAYKITDDCTNCGA--CEAECPVEAISEKDDHRWIDPDQCTSCGTCAEVCPVEAILAD 56


>gi|150015010|ref|YP_001307264.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium beijerinckii NCIMB 8052]
 gi|149901475|gb|ABR32308.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium beijerinckii NCIMB 8052]
          Length = 56

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A
Sbjct: 1  MAFVINDSCVSCGA--CAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGA 52


>gi|289675306|ref|ZP_06496196.1| ferredoxin [Pseudomonas syringae pv. syringae FF5]
          Length = 58

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          G+E ++++N+E A  WPNIT KK+++P AA+ DG
Sbjct: 15 GMENFIELNAELAEVWPNITEKKDAMPDAAEWDG 48


>gi|262402193|ref|ZP_06078754.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC586]
 gi|262350975|gb|EEZ00108.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC586]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|15832635|ref|NP_311408.1| polyferredoxin [Escherichia coli O157:H7 str. Sakai]
 gi|168748422|ref|ZP_02773444.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4113]
 gi|168756291|ref|ZP_02781298.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4401]
 gi|168761129|ref|ZP_02786136.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4501]
 gi|168768611|ref|ZP_02793618.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4486]
 gi|168773567|ref|ZP_02798574.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4196]
 gi|168778485|ref|ZP_02803492.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4076]
 gi|168787865|ref|ZP_02812872.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC869]
 gi|168798890|ref|ZP_02823897.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC508]
 gi|195936661|ref|ZP_03082043.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4024]
 gi|208809392|ref|ZP_03251729.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4206]
 gi|208812703|ref|ZP_03254032.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4045]
 gi|208821200|ref|ZP_03261520.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4042]
 gi|209398407|ref|YP_002271989.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4115]
 gi|217327417|ref|ZP_03443500.1| putative polyferredoxin [Escherichia coli O157:H7 str. TW14588]
 gi|261223049|ref|ZP_05937330.1| putative polyferredoxin [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259400|ref|ZP_05951933.1| putative polyferredoxin [Escherichia coli O157:H7 str. FRIK966]
 gi|13362851|dbj|BAB36804.1| putative polyferredoxin [Escherichia coli O157:H7 str. Sakai]
 gi|187770682|gb|EDU34526.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4196]
 gi|188017040|gb|EDU55162.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4113]
 gi|189003633|gb|EDU72619.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4076]
 gi|189356572|gb|EDU74991.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4401]
 gi|189362196|gb|EDU80615.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4486]
 gi|189368440|gb|EDU86856.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4501]
 gi|189372305|gb|EDU90721.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC869]
 gi|189378670|gb|EDU97086.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC508]
 gi|208729193|gb|EDZ78794.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4206]
 gi|208733980|gb|EDZ82667.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4045]
 gi|208741323|gb|EDZ89005.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4042]
 gi|209159807|gb|ACI37240.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4115]
 gi|217319784|gb|EEC28209.1| putative polyferredoxin [Escherichia coli O157:H7 str. TW14588]
 gi|320188852|gb|EFW63511.1| Putative polyferredoxin [Escherichia coli O157:H7 str. EC1212]
 gi|326340317|gb|EGD64121.1| Putative polyferredoxin [Escherichia coli O157:H7 str. 1125]
 gi|326345001|gb|EGD68745.1| Putative polyferredoxin [Escherichia coli O157:H7 str. 1044]
          Length = 284

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CIDC VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIRGVNSP 69


>gi|187932652|ref|YP_001884615.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
 gi|187720805|gb|ACD22026.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
          Length = 494

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC        E    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAITYVEGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162


>gi|186476296|ref|YP_001857766.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phymatum STM815]
 gi|184192755|gb|ACC70720.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phymatum STM815]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +    + PD C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAIQHDDTNYVVMPDVCNGCMACVPPCPTGAI 64



 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI+ D
Sbjct: 15 IDPEICIRCNTCEETCPIDAIQHD 38


>gi|317485201|ref|ZP_07944082.1| dimethylsulfoxide reductase [Bilophila wadsworthia 3_1_6]
 gi|316923492|gb|EFV44697.1| dimethylsulfoxide reductase [Bilophila wadsworthia 3_1_6]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y V+ +C  C++  C E CP    ++ EN  +++ PD C+ C  CE  CP  A + D 
Sbjct: 59  FAYYVSLSCNHCENPVCAEACPTQAMHKDENGIVSVDPDRCVGCRYCEWNCPYGAPQFDP 118

Query: 60  E 60
           E
Sbjct: 119 E 119


>gi|224437316|ref|ZP_03658288.1| putative formate dehydrogenase iron-sulfur subunit [Helicobacter
           cinaedi CCUG 18818]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY   + + +H  + CI CG C   CP  A
Sbjct: 66  ISIACMHCADAPCAKVCPVDCFYIRADGIVLHNKKTCIGCGYCLYACPFGA 116


>gi|319428322|gb|ADV56396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQHTLKEEA 492


>gi|146291447|ref|YP_001181871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563137|gb|ABP74072.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQNTLKEEA 492


>gi|229529447|ref|ZP_04418837.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           12129(1)]
 gi|229333221|gb|EEN98707.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           12129(1)]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|158520200|ref|YP_001528070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509026|gb|ABW65993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 386

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 14/75 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAI 55
           + TE C LC    CV+ CPV+  Y          +NF+A++  EC+ CGVC   C  +AI
Sbjct: 302 IKTEECNLC--MACVDKCPVNALYHHKPHKDDGSDNFIALNESECLGCGVCVMACDNEAI 359

Query: 56  K----PDTEPGLELW 66
           +     DT P +++ 
Sbjct: 360 QLVKVRDTVPEIDVL 374


>gi|33865811|ref|NP_897370.1| ferredoxin [Synechococcus sp. WH 8102]
 gi|33632981|emb|CAE07792.1| ferredoxin [Synechococcus sp. WH 8102]
          Length = 74

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C  +G+       +F  I+ D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCVDACPVACIDQGQGKNKKGTDFYWINFDTCIDCGICLQVCPVEGAILAEERPDLQ 71


>gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 527

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + Y +TE CI C  T C  VCPV C     +    I   +CI CG C   CPV AI+
Sbjct: 471 LKYYITEKCIGC--TKCANVCPVKCIDGSIKKRHVITAQQCIKCGQCYEACPVHAIE 525


>gi|119872161|ref|YP_930168.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum islandicum DSM 4184]
 gi|119673569|gb|ABL87825.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum islandicum DSM 4184]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLEL 65
          E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP + I+ +    G+ +
Sbjct: 32 EQCRKCEKKPCTYMCPAKCYVQQGDYVVLSTEACVECGTCRVVCPYNNIEWNYPRSGMGI 91

Query: 66 WLKI 69
          W + 
Sbjct: 92 WYRF 95


>gi|57169093|ref|ZP_00368220.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter coli
           RM2228]
 gi|305432302|ref|ZP_07401465.1| formate dehydrogenase [Campylobacter coli JV20]
 gi|57019551|gb|EAL56242.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter coli
           RM2228]
 gi|304444650|gb|EFM37300.1| formate dehydrogenase [Campylobacter coli JV20]
          Length = 213

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|296272270|ref|YP_003654901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096445|gb|ADG92395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 186

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCPV     G++ + +H + CI C +C   CP  AI+P+ E
Sbjct: 56  CRQCDDAPCANVCPVGALEFGKDSILVHEELCIGCKMCTLVCPFGAIRPEAE 107


>gi|288560652|ref|YP_003424138.1| energy-converting hydrogenase A subunit Q EhaQ
          [Methanobrevibacter ruminantium M1]
 gi|288543362|gb|ADC47246.1| energy-converting hydrogenase A subunit Q EhaQ
          [Methanobrevibacter ruminantium M1]
          Length = 483

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI---KPDTEP 61
           E CI C    C+ VCP+D  Y+ EN   I  DE C  C +C   CP DAI   K  +EP
Sbjct: 22 NEKCINCSDKPCLGVCPIDAVYQDENTKLIKLDEHCFGCVLCSNACPYDAIHIKKTLSEP 81

Query: 62 GLELWLKINSE 72
            E    IN +
Sbjct: 82 IRENVPNINKK 92



 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C++ CPVD     ++ + ++ DECI C  CE  CPV+A +  T
Sbjct: 436 CIKNCPVDAMSVEDDMITVNHDECISCRNCEGICPVNAARVST 478


>gi|325294718|ref|YP_004281232.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum
          DSM 11699]
 gi|325065166|gb|ADY73173.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum
          DSM 11699]
          Length = 505

 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
          C+ CK   CV+ C  D  Y  E+   I    + C++C  CE  CP DAIK    P
Sbjct: 22 CVRCK--SCVDQCSFDATYYDEDLEMIVNRNENCVNCKRCEAFCPTDAIKVVKNP 74


>gi|304317218|ref|YP_003852363.1| ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778720|gb|ADL69279.1| Ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 504

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP       +    I  D+CI+CG C+  CP +AI  +  P
Sbjct: 100 YRVTEACRGCITHRCTEVCPKGAISIIDRKSHIDYDKCIECGRCKEACPYNAISDNLRP 158


>gi|33862969|ref|NP_894529.1| ferredoxin, 4Fe-4S [Prochlorococcus marinus str. MIT 9313]
 gi|33634886|emb|CAE20872.1| ferredoxin, 4Fe-4S [Prochlorococcus marinus str. MIT 9313]
          Length = 74

 Score = 41.6 bits (96), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DC + CPV C         +G NF  I+ D CIDCG+C   CPV+ A+ P+    L+
Sbjct: 14 ADCAQACPVGCIQPGQGKNNKGRNFYLINFDICIDCGICLQVCPVEGAVLPEERRDLQ 71


>gi|238924739|ref|YP_002938255.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|238876414|gb|ACR76121.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|291526109|emb|CBK91696.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 485

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEAGRLRSHIDPQKCKECGRCAQACPYNAIAHLKRP 151


>gi|15641521|ref|NP_231153.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587191|ref|ZP_01676965.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           2740-80]
 gi|121726940|ref|ZP_01680141.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V52]
 gi|147675071|ref|YP_001217065.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|153214795|ref|ZP_01949624.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 1587]
 gi|153801187|ref|ZP_01955773.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-3]
 gi|153818524|ref|ZP_01971191.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae NCTC
           8457]
 gi|153822821|ref|ZP_01975488.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae B33]
 gi|153824883|ref|ZP_01977550.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-2]
 gi|153829769|ref|ZP_01982436.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 623-39]
 gi|227081670|ref|YP_002810221.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae M66-2]
 gi|229508540|ref|ZP_04398043.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae BX
           330286]
 gi|229511389|ref|ZP_04400868.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae B33]
 gi|229514918|ref|ZP_04404378.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TMA
           21]
 gi|229518528|ref|ZP_04407971.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC9]
 gi|229520548|ref|ZP_04409972.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TM
           11079-80]
 gi|229523595|ref|ZP_04413000.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229607945|ref|YP_002878593.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           MJ-1236]
 gi|254226566|ref|ZP_04920148.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V51]
 gi|254848633|ref|ZP_05237983.1| formate dehydrogenase [Vibrio cholerae MO10]
 gi|255745047|ref|ZP_05418997.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholera CIRS
           101]
 gi|261211641|ref|ZP_05925928.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC341]
 gi|262161666|ref|ZP_06030684.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae INDRE
           91/1]
 gi|262169544|ref|ZP_06037235.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC27]
 gi|262190850|ref|ZP_06049070.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae CT
           5369-93]
 gi|297579081|ref|ZP_06941009.1| formate dehydrogenase [Vibrio cholerae RC385]
 gi|9656016|gb|AAF94667.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548534|gb|EAX58588.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           2740-80]
 gi|121630702|gb|EAX63089.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V52]
 gi|124115137|gb|EAY33957.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 1587]
 gi|124123307|gb|EAY42050.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-3]
 gi|125620902|gb|EAZ49254.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V51]
 gi|126510927|gb|EAZ73521.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae NCTC
           8457]
 gi|126519680|gb|EAZ76903.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae B33]
 gi|146316954|gb|ABQ21493.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|148874748|gb|EDL72883.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 623-39]
 gi|149741601|gb|EDM55631.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-2]
 gi|227009558|gb|ACP05770.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae M66-2]
 gi|227013426|gb|ACP09636.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|229337176|gb|EEO02193.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229342372|gb|EEO07366.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TM
           11079-80]
 gi|229343217|gb|EEO08192.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC9]
 gi|229347623|gb|EEO12582.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TMA
           21]
 gi|229351354|gb|EEO16295.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae B33]
 gi|229354494|gb|EEO19417.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae BX
           330286]
 gi|229370600|gb|ACQ61023.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           MJ-1236]
 gi|254844338|gb|EET22752.1| formate dehydrogenase [Vibrio cholerae MO10]
 gi|255737518|gb|EET92913.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholera CIRS
           101]
 gi|260838991|gb|EEX65623.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC341]
 gi|262021778|gb|EEY40488.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC27]
 gi|262028398|gb|EEY47053.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae INDRE
           91/1]
 gi|262033269|gb|EEY51787.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae CT
           5369-93]
 gi|297536675|gb|EFH75508.1| formate dehydrogenase [Vibrio cholerae RC385]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|262165716|ref|ZP_06033453.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus VM223]
 gi|262171469|ref|ZP_06039147.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus MB-451]
 gi|261892545|gb|EEY38531.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus MB-451]
 gi|262025432|gb|EEY44100.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus VM223]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|120600652|ref|YP_965226.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560745|gb|ABM26672.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQHTLKEEA 492


>gi|78043298|ref|YP_360068.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995413|gb|ABB14312.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 893

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E C  C    CV VCP  V     G+N   I P  C  CG+C  ECP  AI  +  P
Sbjct: 820 VIEEKCAAC--LTCVRVCPYSVPVVINGKNVAYIDPISCQGCGICASECPNKAIVQNNRP 877


>gi|291527156|emb|CBK92742.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 485

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEAGRLRSHIDPQKCKECGRCAQACPYNAIAHLKRP 151


>gi|298498401|ref|ZP_07008208.1| formate dehydrogenase [Vibrio cholerae MAK 757]
 gi|297542734|gb|EFH78784.1| formate dehydrogenase [Vibrio cholerae MAK 757]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|254286426|ref|ZP_04961384.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           AM-19226]
 gi|150423593|gb|EDN15536.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           AM-19226]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|145591121|ref|YP_001153123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282889|gb|ABP50471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V E C LC    CV VCP D      + L + P  CI CGVC  +CP   I+   +P
Sbjct: 255 VKEGCTLCGA--CVNVCPTDALSIKGHELRLVPALCIACGVCAEKCPEGVIEIRQQP 309



 Score = 40.4 bits (93), Expect = 0.070,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK----PD 58
           V  + CI C    C   CP   F Y     + +  D C+DCG+C   CPVDAIK    PD
Sbjct: 82  VRQDKCIWCGL--CAGYCPASAFEYVERAVVRVKYDLCVDCGLCNSVCPVDAIKMPSLPD 139

Query: 59  T 59
           T
Sbjct: 140 T 140


>gi|110802368|ref|YP_699704.1| ferredoxin (fdxA) [Clostridium perfringens SM101]
 gi|110682869|gb|ABG86239.1| putative ferredoxin [Clostridium perfringens SM101]
          Length = 69

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A
Sbjct: 14 MAYKILDTCVSCGA--CAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGA 65


>gi|45359065|ref|NP_988622.1| hypothetical protein MMP1502 [Methanococcus maripaludis S2]
 gi|45047940|emb|CAF31058.1| conserved archaeal protein, pyruvate oxidoreductase-associated
           [Methanococcus maripaludis S2]
          Length = 138

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 14/99 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--------- 58
            C+ C+   C+ VCP D   +  + + +HP++C+ C +C   CPV AI+ D         
Sbjct: 34  RCMHCEDAPCLNVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQIDRGTKVAVKC 93

Query: 59  ---TEPGLELWLKINSEYATQW--PNITTKKESLPSAAK 92
               E G E+ L++    A  +    I  K+  L S  K
Sbjct: 94  DGCIERGSEVCLEVCPTKALDYYENTIENKRAELVSKLK 132


>gi|149908806|ref|ZP_01897466.1| putative formate dehydrogenase, iron-sulfur subunit [Moritella sp.
           PE36]
 gi|149808080|gb|EDM68021.1| putative formate dehydrogenase, iron-sulfur subunit [Moritella sp.
           PE36]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK-PDTEPG 62
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A + P  +  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFERTEDGIVLHDKDLCIGCGYCLFACPFGAPQFPKQDAF 112

Query: 63  LELWLKINSEYATQWPNITTKKE 85
            E        +    PN+    E
Sbjct: 113 AERGKMDKCTFCAGGPNVENGSE 135


>gi|121535575|ref|ZP_01667382.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305815|gb|EAX46750.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 499

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C+  CP       +N   I  + C++CG+C+  CP  AI   + P
Sbjct: 106 FIVTDACRNCVAHHCINSCPKKAIAVVQNRAFIDKNRCVECGLCKRSCPYGAIIEVSRP 164


>gi|317060630|ref|ZP_07925115.1| hydrogenase [Fusobacterium sp. D12]
 gi|313686306|gb|EFS23141.1| hydrogenase [Fusobacterium sp. D12]
          Length = 599

 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C     +  +FL      C  CG C   CPV AI
Sbjct: 164 LKFKITEKCIGC--TACARVCPVKCIAGAPKKRHFL--DTSRCTHCGQCVSACPVGAI 217


>gi|258622879|ref|ZP_05717895.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM573]
 gi|258625040|ref|ZP_05719961.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM603]
 gi|258582673|gb|EEW07501.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM603]
 gi|258584818|gb|EEW09551.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM573]
          Length = 199

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 100


>gi|11465802|ref|NP_053946.1| hypothetical protein PopuCp151 [Porphyra purpurea]
 gi|1723405|sp|P51336|YCXI_PORPU RecName: Full=Uncharacterized protein in rpl9-rpl11 intergenic
          region; AltName: Full=ORF75
 gi|1276802|gb|AAC08222.1| ORF75 [Porphyra purpurea]
          Length = 75

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-------ECIDCGVCEPECPVD-AI 55
          +VTE CI     +CV  CPV C ++GE    I+ D        CIDC +C   CP   AI
Sbjct: 5  IVTEKCI--GVAECVNACPVSCIHKGEGKNTINKDWYWIDFAACIDCSICIQVCPTKGAI 62

Query: 56 KPDTEPGLELWLK 68
              EP L+  L+
Sbjct: 63 LDKEEPSLQRKLR 75


>gi|300857164|ref|YP_003782148.1| putative electron transfer flavoprotein subunit alpha
          [Clostridium ljungdahlii DSM 13528]
 gi|300437279|gb|ADK17046.1| predicted electron transfer flavoprotein alpha subunit
          [Clostridium ljungdahlii DSM 13528]
          Length = 429

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  ++T++CI C+   C+ +CP D     GE  L    ++C +CG C   CPV A+
Sbjct: 1  MAVIITDSCIGCE--SCIPICPFDALGINGEGKLVASKEKCTECGKCVSVCPVSAL 54


>gi|260768419|ref|ZP_05877353.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio furnissii CIP
           102972]
 gi|260616449|gb|EEX41634.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio furnissii CIP
           102972]
 gi|315180130|gb|ADT87044.1| formate dehydrogenase, iron-sulfur subunit [Vibrio furnissii NCTC
           11218]
          Length = 202

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T+ CI C  T C + CPV C  EGE      I   +CI CG CE  CPV A+
Sbjct: 570 LSYEITDKCIGC--TKCAKNCPVSCI-EGEVKKQHVIDKSQCIKCGNCETVCPVHAV 623


>gi|182420065|ref|ZP_02951299.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237666800|ref|ZP_04526785.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376102|gb|EDT73689.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237657999|gb|EEP55554.1| ferredoxin, 4Fe-4S [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 56

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A
Sbjct: 1  MAFVINDSCVSCGA--CAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGA 52


>gi|330445947|ref|ZP_08309599.1| formate dehydrogenase iron-sulfur subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490138|dbj|GAA04096.1| formate dehydrogenase iron-sulfur subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK-PDTEPG 62
           ++  C+ C    C+ VCP DCF   E+ +  H  D CI CG C   CP  A + P  E  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSHTEDGIVQHNKDLCIGCGYCLFACPFGAPQFPKQEAF 112

Query: 63  LELWLKINSEYATQWPN 79
            E        Y +  PN
Sbjct: 113 AERGKMDKCTYCSGGPN 129


>gi|150401595|ref|YP_001325361.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014298|gb|ABR56749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 151

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C++  C  +CPVD  Y  +    +  + CI CG+CE  CPV +I  D     +  L 
Sbjct: 42  CMQCENAPCYNICPVDAIYLKDGIPLVKKERCIGCGMCEIVCPVGSIFIDKLYAHKCSLC 101

Query: 69  INSEYATQWPNITTKKESLPSAAK--MDGVKQKYEKYF 104
           ++++  T       K ++L       +D +K++  K  
Sbjct: 102 LDTDRITPACLEACKDKALKLVCDECIDSIKEERRKKL 139


>gi|91773531|ref|YP_566223.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
          DSM 6242]
 gi|91712546|gb|ABE52473.1| 4Fe-4S ferredoxin, iron-sulfur protein [Methanococcoides burtonii
          DSM 6242]
          Length = 58

 Score = 41.6 bits (96), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 17 CVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CV+ CP +    +GEN   ++ DECIDCG C   CP DAI 
Sbjct: 16 CVDDCPSEAISMDGENIAVVNADECIDCGACVDSCPTDAIS 56


>gi|317489682|ref|ZP_07948186.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911276|gb|EFV32881.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 237

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C++  CV VCPV   Y GE+  + I  D CI C  C   CP  A   D
Sbjct: 85  CMQCENPACVSVCPVSATYRGEDGIVVIDADRCIGCKYCIAACPYGARSAD 135


>gi|313143772|ref|ZP_07805965.1| formate dehydrogenase iron-sulfur subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313128803|gb|EFR46420.1| formate dehydrogenase iron-sulfur subunit [Helicobacter cinaedi
           CCUG 18818]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C +VCPVDCFY   + + +H  + CI CG C   CP  A
Sbjct: 59  ISIACMHCADAPCAKVCPVDCFYIRADGIVLHNKKTCIGCGYCLYACPFGA 109


>gi|296184817|ref|ZP_06853228.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|296050599|gb|EFG90022.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 495

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y VT+ C  C    C+EVCP +          I+ + C +CG+C   CP  AI     P 
Sbjct: 104 YTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIAEVMRPC 163

Query: 63  LEL----WLKINSE 72
             +     L+INS+
Sbjct: 164 KRVCPTGALEINSD 177


>gi|262382202|ref|ZP_06075340.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B]
 gi|262297379|gb|EEY85309.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B]
          Length = 415

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDE--CIDCGVCEPECPV 52
          +T+    C    CV+ CP  C     + E FL    DE  CIDCG+CE  CPV
Sbjct: 4  ITDKRDCCGCNSCVQRCPKSCIRMREDDEGFLYPEVDESVCIDCGLCEKVCPV 56


>gi|167758102|ref|ZP_02430229.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
 gi|167663999|gb|EDS08129.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
          Length = 503

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP D          I  D+CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCIEVCPKDAISMVGGKSYIDQDKCIKCGKCKSVCPYDAISKKERP 175


>gi|167629547|ref|YP_001680046.1| 4fe-4S ferredoxin, pshb protein [Heliobacterium modesticaldum
          Ice1]
 gi|119675287|gb|ABL89193.1| PshB [Heliobacterium modesticaldum]
 gi|167592287|gb|ABZ84035.1| 4fe-4S ferredoxin, pshb protein [Heliobacterium modesticaldum
          Ice1]
          Length = 54

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T+ C  C    C++ C V    EG+ + +I  D C+DCGVC  +CPVDAI P
Sbjct: 1  MAYKITDACTACGA--CMDGCCVGAIVEGKKY-SITSD-CVDCGVCADKCPVDAIIP 53


>gi|21226713|ref|NP_632635.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
 gi|20905001|gb|AAM30307.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
          Length = 376

 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ T  C LCK   CV  C      E    L I+P++CI C  C   CP DA++
Sbjct: 310 FINTSKCALCKA--CVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAVE 361


>gi|255525714|ref|ZP_05392646.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|255510616|gb|EET86924.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y VT+ C  C    C+EVCP +          I+ + C +CG+C   CP  AI     P 
Sbjct: 67  YTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIAEVMRPC 126

Query: 63  LEL----WLKINSE 72
             +     L+INS+
Sbjct: 127 KRVCPTGALEINSD 140


>gi|260881286|ref|ZP_05404060.2| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
 gi|260849026|gb|EEX69033.1| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y V++ C+ C+   C+ VCP  C   GEN  A I    C+ CG C   CPV AI
Sbjct: 150 YQVSKACVGCRR--CLSVCPQACITMGENDCAHIEDSHCLSCGRCAEVCPVQAI 201


>gi|222054720|ref|YP_002537082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
 gi|221564009|gb|ACM19981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
          Length = 55

 Score = 41.6 bits (96), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M + +++ CI C   D  E CPV+   E  +   I  D CIDCG C   CPV AI  
Sbjct: 1  MAHKISDECINCGACD--ESCPVNAISEEGSKRTISADTCIDCGACVDTCPVSAISA 55


>gi|309792281|ref|ZP_07686753.1| cyclic nucleotide-binding protein [Oscillochloris trichoides DG6]
 gi|308225822|gb|EFO79578.1| cyclic nucleotide-binding protein [Oscillochloris trichoides DG6]
          Length = 476

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
           +CVE CP   F   E  + +    C  CG C P CP   +   T+   E       E  +
Sbjct: 366 ECVEACPEHAFERTEEGVLLITQRCTGCGACIPACPYQVVSSITQEHFE------PEALS 419

Query: 76  QWPNITTKKESLPSA 90
            W  +  + +  PSA
Sbjct: 420 LWKRLLRRFQPQPSA 434


>gi|308049780|ref|YP_003913346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631970|gb|ADN76272.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 233

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGLELW 66
           LC H D   CVEVCP    Y+ +N L +H +E CI C  C   CP   I  +       W
Sbjct: 56  LCNHCDNAACVEVCPTGAMYKADNGLTLHRNEDCIGCQRCVRACPYQVIGMNRSAPHRHW 115


>gi|304412801|ref|ZP_07394403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307465|ref|ZP_07587200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304348881|gb|EFM13297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910253|gb|EFN40686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C +C    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQHTLKEEA 492


>gi|160894561|ref|ZP_02075337.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
 gi|156863872|gb|EDO57303.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
          Length = 483

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C   C       G +   I P +C +CG C   CP +AI     P
Sbjct: 94  YVVTDNCQKCMGKACQAACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAIADLVRP 152



 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 17  CVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C++ CPVD     +N      I+ D+CI CG C  +CP  AI   T
Sbjct: 153 CMKSCPVDAISVADNGTGIAVINQDKCIQCGSCVHKCPFGAIGSKT 198


>gi|217971445|ref|YP_002356196.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496580|gb|ACK44773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C +C    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQHTLKEEA 492


>gi|126176318|ref|YP_001052467.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999523|gb|ABN63598.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 553

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C +C    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQHTLKEEA 492


>gi|251799429|ref|YP_003014160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. JDR-2]
 gi|247547055|gb|ACT04074.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. JDR-2]
          Length = 110

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKP 57
          M  VV+E+ C+ C    CV VCP + F  G++ + +    D+C  C +CE  CPVDA+  
Sbjct: 1  MIEVVSESRCVSCNQ--CVSVCPTNVFDRGDDGIPVIARQDDCQTCFMCELYCPVDALY- 57

Query: 58 DTEPGLELWLKINSEYATQWPNITTKKESL 87
             P  E  + I+ E A Q   +   +E +
Sbjct: 58 -VAPDSEQVIGISEEEAEQQGLLGGYREKV 86


>gi|148242469|ref|YP_001227626.1| ferredoxin [Synechococcus sp. RCC307]
 gi|147850779|emb|CAK28273.1| Ferredoxin [Synechococcus sp. RCC307]
          Length = 74

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C + G+        F  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 14 ADCVDACPVACIHPGQGANTKGTGFYWIDFQTCIDCGICLQVCPVEGAIVPEERPDLQ 71


>gi|118580644|ref|YP_901894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pelobacter propionicus DSM 2379]
 gi|118503354|gb|ABK99836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
          propionicus DSM 2379]
          Length = 56

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + ++CI C   D  + CPV+   E +    I  D CIDCG C   CPV+AI
Sbjct: 1  MAHSINDDCINCGACD--DSCPVNAISEQDGKRVIDADTCIDCGACVDTCPVNAI 53


>gi|330811333|ref|YP_004355795.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379441|gb|AEA70791.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  I  DEC  C +C   CPVD I+
Sbjct: 73  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTILIDECTGCDLCVAPCPVDCIE 127


>gi|255100494|ref|ZP_05329471.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ENC+ C    C+  CP+D       +G+ ++ I  D C+ CGVC   C  ++I
Sbjct: 293 ENCVKCGK--CITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSI 343



 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+ + C+ CG C   CP+DAI    E G E ++KI+ +
Sbjct: 290 INHENCVKCGKCITACPIDAISKVKEDGKE-YIKIDED 326


>gi|126699072|ref|YP_001087969.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|254975022|ref|ZP_05271494.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092411|ref|ZP_05321889.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255306435|ref|ZP_05350606.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|255314150|ref|ZP_05355733.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516828|ref|ZP_05384504.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649929|ref|ZP_05396831.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683084|ref|YP_003214369.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686682|ref|YP_003217815.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520014|ref|ZP_07406361.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|115250509|emb|CAJ68333.1| putative iron-sulfur protein [Clostridium difficile]
 gi|260209247|emb|CBA62547.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212698|emb|CBE03782.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 424

 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ENC+ C    C+  CP+D       +G+ ++ I  D C+ CGVC   C  ++I
Sbjct: 293 ENCVKCGK--CITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSI 343



 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+ + C+ CG C   CP+DAI    E G E ++KI+ +
Sbjct: 290 INHENCVKCGKCITACPIDAISKVKEDGKE-YIKIDED 326


>gi|126459993|ref|YP_001056271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249714|gb|ABO08805.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 369

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V + C LC    CV VCP D     E  L I P  CI CG+C  +CP   ++    P
Sbjct: 255 VLQGCTLCGA--CVNVCPTDALSLREFELRIVPALCIGCGLCAEKCPEGVMRVSESP 309



 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C + CP     Y    ++ +    C DCG+C   CPV+AI+  + P
Sbjct: 87  CIWCG--ICAKACPFSAVKYAERKYVEVDYGLCADCGLCNAVCPVEAIQMPSLP 138


>gi|119717157|ref|YP_924122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119537818|gb|ABL82435.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 505

 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           C  C    CV++CP    ++ E+ +    +E CI C  C   CP DAI  D E
Sbjct: 57  CNHCTDAPCVKICPTQALFKREDGIVDFDNERCIGCKSCMQACPYDAIYIDAE 109


>gi|124023226|ref|YP_001017533.1| ferredoxin 4Fe-4S [Prochlorococcus marinus str. MIT 9303]
 gi|123963512|gb|ABM78268.1| ferredoxin, 4Fe-4S [Prochlorococcus marinus str. MIT 9303]
          Length = 74

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DC + CPV C         +G NF  I+ D CIDCG+C   CPV+ A+ P+    L+
Sbjct: 14 ADCAQACPVGCIQPGQGKNDKGRNFYLINFDICIDCGICLQVCPVEGAVLPEERRDLQ 71


>gi|160877323|ref|YP_001556639.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862845|gb|ABX51379.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269528|gb|ADT96381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C +C    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  +IN + A +    T K+E+
Sbjct: 468 VISLTPQINFDKAARQQQHTLKEEA 492


>gi|153812810|ref|ZP_01965478.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
 gi|149831170|gb|EDM86259.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
          Length = 501

 Score = 41.2 bits (95), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+V+  C  C    C++ CP       +    I  D+CI CG C+  CP DAI  +  P
Sbjct: 115 YIVSNMCRGCVAHPCMQACPKGAISMKDGKSYIDQDKCIKCGKCKAACPYDAISHNIRP 173


>gi|239625212|ref|ZP_04668243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519442|gb|EEQ59308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 507

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V + N I+ +   C   C +DC +  EN  A I  D+C+ CG+C   CP  AI   ++
Sbjct: 163 VCSYNAIIIQERPCAAACGMDCIHSDENGKADIDYDKCVSCGMCLVNCPFGAIADKSQ 220



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT+ C  C    CVEVCP D            I  D CI CG C   C  +AI     P
Sbjct: 116 VVTDGCQGCLAHPCVEVCPKDAVSIDRSNGRSHIDQDRCIRCGRCADVCSYNAIIIQERP 175


>gi|9651775|gb|AAF91267.1|AF230199_9 pyruvate oxidoreductase cysteine-rich subunit 2 [Methanococcus
           maripaludis]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 14/99 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--------- 58
            C+ C+   C+ VCP D   +  + + +HP++C+ C +C   CPV AI+ D         
Sbjct: 34  RCMHCEDAPCLNVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQIDRCTKVAVKC 93

Query: 59  ---TEPGLELWLKINSEYATQW--PNITTKKESLPSAAK 92
               E G E+ L++    A  +    I  K+  L S  K
Sbjct: 94  DGCIERGSEVCLEVCPTKALDYYENTIENKRAELVSKLK 132


>gi|70732171|ref|YP_261927.1| RnfABCDGE type electron transport complex subunit B [Pseudomonas
           fluorescens Pf-5]
 gi|68346470|gb|AAY94076.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 401

 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C++ CPVD        + ++  DEC  C +C   CPVD I
Sbjct: 73  IAHIREAECIGC--TKCIQACPVDAIVGAAKLMHSVLIDECTGCDLCVAPCPVDCI 126


>gi|218245586|ref|YP_002370957.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 8801]
 gi|257058632|ref|YP_003136520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 8802]
 gi|218166064|gb|ACK64801.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 8801]
 gi|256588798|gb|ACU99684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 8802]
          Length = 75

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DCV+ CPV C +EG        ++  I  + CIDCG+C   CPV+ AI
Sbjct: 5  IVTETCE--GVADCVDACPVACIHEGPGKNSKGTDWYWIDFNTCIDCGICLNVCPVEGAI 62

Query: 56 KPDTEPGLE 64
           P+  P L+
Sbjct: 63 IPEERPDLQ 71


>gi|15668327|ref|NP_247123.1| formate dehydrogenase, iron-sulfur subunit [Methanocaldococcus
          jannaschii DSM 2661]
 gi|2833496|sp|Q57619|FER8_METJA RecName: Full=Uncharacterized ferredoxin MJ0155
 gi|1498926|gb|AAB98137.1| formate dehydrogenase, iron-sulfur subunit [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 151

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C++  C E+CPVD  Y  +    +  + CI CG+C   CP+ AI
Sbjct: 42 CMQCENAPCKEICPVDAIYLKDGIPIVDKERCIACGMCAIACPIGAI 88


>gi|226952541|ref|ZP_03823005.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
 gi|226836723|gb|EEH69106.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK-- 56
           M  ++ E+ CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I   
Sbjct: 87  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCIDLI 144

Query: 57  PDTEP 61
           PDT+P
Sbjct: 145 PDTKP 149


>gi|149926436|ref|ZP_01914697.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149824799|gb|EDM84013.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 200

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCPV+CFY+ +  + +H  D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCQAVCPVNCFYKTDEGVVLHDKDLCIGCGYCFYACPFGA 101


>gi|308049671|ref|YP_003913237.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307631861|gb|ADN76163.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C +  CVEVCPV   +    +  + + P  CI C  C   CP DA + D 
Sbjct: 63  SYYVSIGCNHCDNPVCVEVCPVGSMHKRRSDGLVHVDPAVCIGCEACAFACPYDAPQFDR 122

Query: 60  EPGL 63
           E G+
Sbjct: 123 ERGI 126


>gi|294649835|ref|ZP_06727237.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824318|gb|EFF83119.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 267

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK-- 56
           M  ++ E+ CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I   
Sbjct: 87  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCIDLI 144

Query: 57  PDTEP 61
           PDT+P
Sbjct: 145 PDTKP 149


>gi|254502148|ref|ZP_05114299.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438219|gb|EEE44898.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 134

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 18 VEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          + VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 1  MAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 38


>gi|260778688|ref|ZP_05887580.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604852|gb|EEX31147.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|188585464|ref|YP_001917009.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350151|gb|ACB84421.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YV+TE C  C    CV  CPV      ++   I   +CI+CG C+  CP +AI     P
Sbjct: 89  YVITEACRGCLANHCVSYCPVGAIEFVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRP 147


>gi|296272504|ref|YP_003655135.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096678|gb|ADG92628.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 198

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C +VCP DCFY   + + +H  D CI CG C   CP  A
Sbjct: 59  ISMACMHCADAPCQQVCPTDCFYIRTDGIVLHNKDICIGCGYCLFACPFGA 109


>gi|227871720|ref|ZP_03990129.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
 gi|227842429|gb|EEJ52650.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
          Length = 488

 Score = 41.2 bits (95), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC LC    C   C        +    I P +C +CG+C   CP  AI   T P
Sbjct: 95  SYSVTDNCRLCLGKACQNSCHFGAITMTDQRAHIDPMKCKECGMCATACPYSAIAQLTRP 154


>gi|323499043|ref|ZP_08104023.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sinaloensis DSM
           21326]
 gi|323315878|gb|EGA68909.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sinaloensis DSM
           21326]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|117922345|ref|YP_871537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614677|gb|ABK50131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C+  CPV+C   + +    I   +CI CG C   CPVDAI
Sbjct: 575 LKYEITDKCIGC--TKCLRNCPVNCINGKVKQVHTIDQSKCIKCGACCSGCPVDAI 628


>gi|257065418|ref|YP_003145090.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256793071|gb|ACV23741.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 414

 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 4  VVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V TE C+  ++       CVE C        +  L +HP +CI CG C   CP  AI+
Sbjct: 21 VHTERCVTVRNRHAACLRCVEACTSGAIIYEDGELQVHPKKCIGCGTCATACPTSAIE 78


>gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 526

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y++ E CI C    C  +CPV     E  N   I  D+CI CG C   CP++AI
Sbjct: 470 LSYLIGEKCIGCGK--CKMLCPVGAISGEKRNRHEIDHDKCIKCGQCMENCPIEAI 523


>gi|254461199|ref|ZP_05074615.1| formate dehydrogenase Fe-S subunit [Rhodobacterales bacterium
          HTCC2083]
 gi|206677788|gb|EDZ42275.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 134

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 18 VEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          + VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 1  MAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGA 38


>gi|18312131|ref|NP_558798.1| ferredoxin like protein [Pyrobaculum aerophilum str. IM2]
 gi|18159564|gb|AAL62980.1| ferredoxin like protein [Pyrobaculum aerophilum str. IM2]
          Length = 96

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLEL 65
          E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP  +I+ +    G+ +
Sbjct: 32 EKCRKCEKKPCTYMCPAKCYVQQGDYVVLSTEACVECGTCRVVCPHGSIEWNYPRSGMGI 91

Query: 66 WLKIN 70
          W +  
Sbjct: 92 WYRFT 96


>gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 526

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y++ E CI C    C  +CPV     E  N   I  D+CI CG C   CP++AI
Sbjct: 470 LSYLIGEKCIGCGK--CKMLCPVGAISGEKRNRHEIDHDKCIKCGQCMENCPIEAI 523


>gi|223041221|ref|ZP_03611471.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
 gi|222877513|gb|EEF12644.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C+   C  VCPVDCFY   + + +H  D CI CG C   CP  A
Sbjct: 62  CMHCEDAPCSLVCPVDCFYIRADGVVLHDKDICIGCGYCLYACPFGA 108


>gi|150005462|ref|YP_001300206.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|149933886|gb|ABR40584.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 427

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPV 52
          +T+    C  + CV+ CP  C       EG  +  +   +CIDCG+CE  CP+
Sbjct: 4  ITDKQSCCGCSSCVQKCPRQCISLHEDTEGFLYPVVDKGDCIDCGLCEKVCPL 56


>gi|78212933|ref|YP_381712.1| ferredoxin [Synechococcus sp. CC9605]
 gi|260436274|ref|ZP_05790244.1| conserved domain protein [Synechococcus sp. WH 8109]
 gi|78197392|gb|ABB35157.1| ferredoxin [Synechococcus sp. CC9605]
 gi|260414148|gb|EEX07444.1| conserved domain protein [Synechococcus sp. WH 8109]
          Length = 74

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C  +G+       +F  I+ D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCVDACPVACIDQGKGKNKKGTDFYWINFDTCIDCGICLQVCPVEGAIVAEERPDLQ 71


>gi|326424045|ref|NP_761415.2| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           CMCP6]
 gi|319999422|gb|AAO10942.2| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           CMCP6]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|313903955|ref|ZP_07837335.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
 gi|313471104|gb|EFR66426.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
          Length = 513

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y VT+NC  C    C   C  D    G +   I P +C +CG C   CP +AI
Sbjct: 95  SYSVTDNCRKCMGQACKNACKFDAISIGNHRSHIDPTKCRECGKCAQACPYNAI 148


>gi|302873024|ref|YP_003841657.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
 gi|307688817|ref|ZP_07631263.1| ferredoxin, 4Fe-4S [Clostridium cellulovorans 743B]
 gi|302575881|gb|ADL49893.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
          Length = 56

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M YV+ ++CI C    C   CPV    +G+    I+   CIDCG C   CPV A
Sbjct: 1  MAYVINDSCISCGA--CASECPVSAINQGDAQYEINDSSCIDCGNCANVCPVGA 52


>gi|163736984|ref|ZP_02144402.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|161389588|gb|EDQ13939.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
          Length = 649

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V ++NC LC    CV +CP     +  +   L    D C+ CG+C   CP DAI    EP
Sbjct: 496 VSSDNCTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCATICPEDAIT--YEP 551

Query: 62  GLEL 65
            L L
Sbjct: 552 RLNL 555



 Score = 40.0 bits (92), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 3   YVVTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV TE  +LC H        T C+++CP        + ++I P  C  CG C   CP  A
Sbjct: 260 YVRTEP-LLCAHSRAGQTGCTRCLDICPTGAISPAGDHVSIDPMICAGCGSCASLCPSGA 318

Query: 55  IKPDTEPGLELWLKINS 71
           I  D  P   L  +I +
Sbjct: 319 ITYDAPPTDALMRRIQT 335


>gi|153832374|ref|ZP_01985041.1| formate dehydrogenase iron-sulfur subunit [Vibrio harveyi HY01]
 gi|156974561|ref|YP_001445468.1| hypothetical protein VIBHAR_02279 [Vibrio harveyi ATCC BAA-1116]
 gi|269963064|ref|ZP_06177400.1| formate dehydrogenase, iron-sulfur subunit [Vibrio harveyi 1DA3]
 gi|148871403|gb|EDL70266.1| formate dehydrogenase iron-sulfur subunit [Vibrio harveyi HY01]
 gi|156526155|gb|ABU71241.1| hypothetical protein VIBHAR_02279 [Vibrio harveyi ATCC BAA-1116]
 gi|269832196|gb|EEZ86319.1| formate dehydrogenase, iron-sulfur subunit [Vibrio harveyi 1DA3]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|157164783|ref|YP_001467446.1| cytoplasmic membrane protein [Campylobacter concisus 13826]
 gi|112800981|gb|EAT98325.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C+   C  VCPVDCFY   + + +H  D CI CG C   CP  A
Sbjct: 62  CMHCEDAPCSLVCPVDCFYIRADGIVLHDKDICIGCGYCLYACPFGA 108


>gi|113972044|ref|YP_735837.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886728|gb|ABI40780.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKESLP 88
            + L  +IN + A +   + T KE  P
Sbjct: 468 VISLTPQINFDKAAR-QQLQTLKEEAP 493


>gi|114049274|ref|YP_739824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890716|gb|ABI44767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV +CP     +G +  A+H     C+ CG+CE  CP        E 
Sbjct: 418 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACP--------EK 467

Query: 62  GLELWLKINSEYATQWPNITTKKESLP 88
            + L  +IN + A +   + T KE  P
Sbjct: 468 VISLTPQINFDKAAR-QQLQTLKEEAP 493


>gi|293401784|ref|ZP_06645925.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304736|gb|EFE45984.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NCI C    C+  CP  C  +G+ +  +    C+ CG+C   CPV AI+  TE
Sbjct: 152 YQIQTNCIGC--NKCLSSCPQQCIKQGKPYHIVQ-SHCLHCGLCYELCPVHAIRKITE 206


>gi|94266820|ref|ZP_01290483.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93452521|gb|EAT03113.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 345

 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP--VDAIK 56
           +T +CI C    CV VCP +   E      I  ++CI CG CE  CP  VDA++
Sbjct: 105 ITADCIKCG--KCVHVCPTEAISEDNR---IAREKCIGCGNCEAICPPKVDAVR 153


>gi|37679883|ref|NP_934492.1| formate dehydrogenase, iron-sulfur subunit [Vibrio vulnificus
           YJ016]
 gi|320156342|ref|YP_004188721.1| formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           MO6-24/O]
 gi|37198628|dbj|BAC94463.1| formate dehydrogenase, iron-sulfur subunit [Vibrio vulnificus
           YJ016]
 gi|319931654|gb|ADV86518.1| formate dehydrogenase-O, iron-sulfur subunit / Putative formate
           dehydrogenase iron-sulfur subunit [Vibrio vulnificus
           MO6-24/O]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|254508923|ref|ZP_05121031.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           16]
 gi|219548162|gb|EED25179.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           16]
          Length = 199

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 100


>gi|163800919|ref|ZP_02194819.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. AND4]
 gi|159175268|gb|EDP60065.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. AND4]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|320449774|ref|YP_004201870.1| NrfC protein [Thermus scotoductus SA-01]
 gi|320149943|gb|ADW21321.1| NrfC protein [Thermus scotoductus SA-01]
          Length = 195

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           E C+ C+ + CV VCP    Y+  E  + + P +CI CG C   CP DA
Sbjct: 56  EQCLHCETSPCVPVCPTGASYQTQEGLVLVDPKKCIACGACIAACPYDA 104


>gi|296158465|ref|ZP_06841296.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          Ch1-1]
 gi|295891409|gb|EFG71196.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          Ch1-1]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CPVD     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPVDAITHDDNNYVVKADICNGCMACVPPCPTGAI 64



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPVDAI  D
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHD 38


>gi|295094175|emb|CBK83266.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Coprococcus sp. ART55/1]
          Length = 56

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+ ++CI C    C   CPV    +      I   +CI CG C   CPV  I 
Sbjct: 1  MAFVIGDSCIGCGS--CAGACPVGAISDNGGVFVIDGSQCISCGACAGSCPVGTIA 54


>gi|255322093|ref|ZP_05363240.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
 gi|255300791|gb|EET80061.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
          Length = 213

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C+   C  VCPVDCFY   + + +H  D CI CG C   CP  A
Sbjct: 62  CMHCEDAPCSLVCPVDCFYIRADGVVLHDKDICIGCGYCLYACPFGA 108


>gi|160933096|ref|ZP_02080485.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
 gi|156868170|gb|EDO61542.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
          Length = 546

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 26/62 (41%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + VT NC  C    CV  CP        +   I P +C +CG C   CP +AI     P 
Sbjct: 160 FTVTANCQRCMAKKCVAACPFGAITVTGSGAYIDPAKCKECGRCAAACPYNAISDTMRPC 219

Query: 63  LE 64
           L 
Sbjct: 220 LR 221



 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE--- 72
           C+  CPVD     EN  A I  + CI CG C  +CP  AI  DT   +E+  ++  +   
Sbjct: 219 CLRSCPVDAITMDENKQASIKYERCIGCGACTMDCPFGAIS-DTSSIVEVIEQLKGKKQV 277

Query: 73  YATQWPNI-----TTKKESLPSAAKMDGVKQKYE 101
           YA   P I     T     L +A K  G    +E
Sbjct: 278 YAMFAPAIEGQFGTATVGMLKAALKKLGFDDSFE 311


>gi|91784376|ref|YP_559582.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
 gi|91688330|gb|ABE31530.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CPVD     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPVDAITHDDNNYVVKADICNGCMACVPPCPTGAI 64



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPVDAI  D
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHD 38


>gi|84385483|ref|ZP_00988514.1| formate dehydrogenase, iron-sulfur subunit [Vibrio splendidus
           12B01]
 gi|86145998|ref|ZP_01064325.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. MED222]
 gi|84379463|gb|EAP96315.1| formate dehydrogenase, iron-sulfur subunit [Vibrio splendidus
           12B01]
 gi|85836203|gb|EAQ54334.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. MED222]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|295111871|emb|CBL28621.1| Uncharacterized conserved protein [Synergistetes bacterium SGP1]
          Length = 203

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + ENCI C    C  VCP D    G  F AI    C+ CG C   CPV AI+
Sbjct: 151 YHIMENCIGCG--TCQAVCPQDAISSGTPF-AIDESHCLQCGNCAENCPVKAIE 201


>gi|160915963|ref|ZP_02078171.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
 gi|158432439|gb|EDP10728.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    CV  C  D  + G     I  D+C +CG C+  CP +AI
Sbjct: 100 VTDNCRKCMAKACVASCKFDAIHIGNERAYIDYDKCKECGACKNACPFNAI 150



 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEY 73
           C   CPVD    GEN LA I  ++CI+CG C+ +CP  AI+  +     +E   K    Y
Sbjct: 157 CKLSCPVDAITIGENKLAYIDEEKCINCGACQAKCPFGAIEDISWMVNVIEELNKGTKMY 216

Query: 74  ATQWPNITTKKESLPSAAKMDGVKQ 98
           A   P I  + ++      ++G++Q
Sbjct: 217 AIFAPAIQGQFDNATLPQIIEGIRQ 241


>gi|95930133|ref|ZP_01312872.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas
          acetoxidans DSM 684]
 gi|95133827|gb|EAT15487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas
          acetoxidans DSM 684]
          Length = 60

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
          M+Y ++ E+C  C   +C  VCPVDC    +N    I+ +ECIDCG C   CPVD I
Sbjct: 1  MSYRILEEDCTACG--ECEPVCPVDCISAKDNGKRLINEEECIDCGACADACPVDCI 55


>gi|296125226|ref|YP_003632478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
          murdochii DSM 12563]
 gi|296017042|gb|ADG70279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
          murdochii DSM 12563]
          Length = 55

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+  +C+ C    C   C  D   EG+ ++ I PD+C DCG CEP CP +AI
Sbjct: 1  MPRVINNDCVACGS--CKPECAFDAISEGDIYV-IDPDKCTDCGACEPVCPSNAI 52


>gi|261252991|ref|ZP_05945564.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio orientalis CIP
           102891]
 gi|260936382|gb|EEX92371.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio orientalis CIP
           102891]
          Length = 202

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|91223723|ref|ZP_01258987.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           12G01]
 gi|254229547|ref|ZP_04922960.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. Ex25]
 gi|262394264|ref|YP_003286118.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. Ex25]
 gi|91191215|gb|EAS77480.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           12G01]
 gi|151937920|gb|EDN56765.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. Ex25]
 gi|262337858|gb|ACY51653.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. Ex25]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|225175583|ref|ZP_03729577.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
          alkaliphilus AHT 1]
 gi|225168912|gb|EEG77712.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
          alkaliphilus AHT 1]
          Length = 400

 Score = 40.8 bits (94), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPG 62
          ++ + CI C+   C++ CP     E ++ +A+  D+C  CG C   CP DAI+  +TE  
Sbjct: 5  IIVDECIGCEA--CIDACPFPGAVEMKDDVAVLTDKCTGCGACADACPSDAIEVEETEVK 62

Query: 63 LELWLKINSEYATQWPNITTKKESLPSAA 91
          +++ +K   +Y   W  I  + + +   A
Sbjct: 63 VDVDIK---DYRGVWVFIEQRDKHIAGVA 88


>gi|328952489|ref|YP_004369823.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452813|gb|AEB08642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 352

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C +C+     E CP+D   EGE    +  + CI CGVC   CP +AI
Sbjct: 281 QACGVCRD----ERCPMDAIEEGEGVYQVIDNRCIGCGVCVITCPGEAI 325


>gi|218709475|ref|YP_002417096.1| formate dehydrogenase iron-sulfur subunit [Vibrio splendidus LGP32]
 gi|218322494|emb|CAV18651.1| Formate dehydrogenase iron-sulfur subunit [Vibrio splendidus LGP32]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|158520577|ref|YP_001528447.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
 gi|158509403|gb|ABW66370.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
          Length = 589

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CVE C        EN  A+H D+C  CG CE  CP  A++
Sbjct: 514 VTDACVGCG--TCVEFCGFGAI-TIENGKAVHNDQCRGCGRCETRCPNHAVR 562


>gi|28898288|ref|NP_797893.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837744|ref|ZP_01990411.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361862|ref|ZP_05774871.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           K5030]
 gi|260878625|ref|ZP_05890980.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260896157|ref|ZP_05904653.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899667|ref|ZP_05908062.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28806505|dbj|BAC59777.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748849|gb|EDM59684.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308086168|gb|EFO35863.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091052|gb|EFO40747.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109456|gb|EFO46996.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308111412|gb|EFO48952.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           K5030]
 gi|328473703|gb|EGF44538.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           10329]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|169830611|ref|YP_001716593.1| hydrogenase large subunit [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637455|gb|ACA58961.1| hydrogenase large subunit domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 485

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C   CP       +N   I  D C++CG+C   CP  AI   + P
Sbjct: 94  YFVTDACQNCVAHSCRNSCPKKAISVLQNRAYIDNDSCVECGICAKNCPYYAIVEISRP 152


>gi|163731475|ref|ZP_02138922.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
 gi|161394929|gb|EDQ19251.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
          Length = 678

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T C++VCP        + +AI P  C  CG C   CP  AI  D  P
Sbjct: 307 TKCLDVCPTGAITSAGDHVAIDPLICAGCGACSALCPSGAITYDAPP 353



 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI
Sbjct: 525 VDTDACTLC--LSCVSLCPSGALGDNPDNPQLRFQEDACLQCGLCSNICPEQAI 576


>gi|148976175|ref|ZP_01812918.1| formate dehydrogenase, iron-sulfur subunit [Vibrionales bacterium
           SWAT-3]
 gi|145964570|gb|EDK29824.1| formate dehydrogenase, iron-sulfur subunit [Vibrionales bacterium
           SWAT-3]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|57505242|ref|ZP_00371171.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Campylobacter upsaliensis RM3195]
 gi|315639207|ref|ZP_07894369.1| formate dehydrogenase, oxidoreductase [Campylobacter upsaliensis
           JV21]
 gi|57016378|gb|EAL53163.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Campylobacter upsaliensis RM3195]
 gi|315480533|gb|EFU71175.1| formate dehydrogenase, oxidoreductase [Campylobacter upsaliensis
           JV21]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCAIVCPVDCFYIRGDGVVLHDKEICIGCGYCLYACPFGA 112


>gi|323706136|ref|ZP_08117705.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534580|gb|EGB24362.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 504

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP            I  D+CI+CG C+  CP +AI  +  P
Sbjct: 100 YRVTEACRGCITHRCTEVCPKGAITIINKKANIDYDKCIECGRCKDACPYNAISDNLRP 158


>gi|288932883|ref|YP_003436943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288895131|gb|ADC66668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 196

 Score = 40.8 bits (94), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 25/55 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y     C  C    C+E CP       EN + +  D CI+CG+C   CP   I+
Sbjct: 55  SYAFPSKCRHCDPAPCLEACPTSAINREENIVFVEVDRCINCGMCAMVCPFGVIR 109


>gi|163857881|ref|YP_001632179.1| ferredoxin-NADP oxidoreductase [Bordetella petrii DSM 12804]
 gi|163261609|emb|CAP43911.1| ferredoxin-NADP oxidoreductase [Bordetella petrii]
          Length = 416

 Score = 40.8 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D      N   + PD C  C  C P CP  +I
Sbjct: 18 EICIRC--NTCEETCPIDAITHDGNNYVVDPDICNGCMACVPPCPTGSI 64



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|313679989|ref|YP_004057728.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Oceanithermus
           profundus DSM 14977]
 gi|313152704|gb|ADR36555.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Oceanithermus
           profundus DSM 14977]
          Length = 257

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    CVE CP     Y     + +  D CI C  C   CP DAI  D E G+
Sbjct: 75  DSCMHCSSAACVEACPTGAVGYREGGVVTVDQDWCIGCRNCVQACPYDAIHYDEEKGV 132


>gi|154483804|ref|ZP_02026252.1| hypothetical protein EUBVEN_01508 [Eubacterium ventriosum ATCC
          27560]
 gi|149735295|gb|EDM51181.1| hypothetical protein EUBVEN_01508 [Eubacterium ventriosum ATCC
          27560]
          Length = 56

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV       +   I  D CI+CG C   CP D+I  D
Sbjct: 1  MAYKITDGCIGCGA--CEGTCPVGAISNDGSVCVIDADTCIECGACAGACPTDSITLD 56


>gi|172040506|ref|YP_001800220.1| dimethyl sulfoxide reductase chain B [Corynebacterium urealyticum
           DSM 7109]
 gi|171851810|emb|CAQ04786.1| dimethyl sulfoxide reductase chain B [Corynebacterium urealyticum
           DSM 7109]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
            TY  + +C  C+   C +VCP    ++GE+  + + PD+CI C  CE  CP  A
Sbjct: 67  FTYYTSISCNHCEDPICAKVCPTTAMHKGEDGIVTVDPDKCIGCRYCEWACPYSA 121


>gi|153950968|ref|YP_001398811.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938414|gb|ABS43155.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|269968574|ref|ZP_06182576.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           40B]
 gi|269826785|gb|EEZ81117.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           40B]
          Length = 199

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 100


>gi|283953866|ref|ZP_06371396.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794645|gb|EFC33384.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|160940737|ref|ZP_02088079.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436257|gb|EDP14024.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
          Length = 505

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y+VT+NC  C    C   C       G     I P +C +CG C   CP +AI     P
Sbjct: 115 SYIVTDNCRKCMGKACQNSCNFGAISMGRERAYIEPGKCKECGKCSQACPYNAIAHLERP 174


>gi|149191930|ref|ZP_01870162.1| formate dehydrogenase, iron-sulfur subunit [Vibrio shilonii AK1]
 gi|148834235|gb|EDL51240.1| formate dehydrogenase, iron-sulfur subunit [Vibrio shilonii AK1]
          Length = 202

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|307323188|ref|ZP_07602398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306890677|gb|EFN21653.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    E G
Sbjct: 148 MASDVCKHCTHAACLDVCPTGALFRTEFGTVVVQDDICNGCGYCVPACPYGVIDVRPEDG 207


>gi|323526712|ref|YP_004228865.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1001]
 gi|323383714|gb|ADX55805.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1001]
          Length = 414

 Score = 40.8 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAITHDDNNYVVRADVCNGCMACVPPCPTGAI 64



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|255502232|gb|ACU11597.1| HfsD [Thermoanaerobacterium saccharolyticum]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP            I  D+CI+CG C+  CP +AI  +  P
Sbjct: 91  YRVTEACRGCITHRCTEVCPKGAITIINKKANIDYDKCIECGRCKDACPYNAISDNLRP 149


>gi|172039435|ref|YP_001805936.1| ferredoxin [Cyanothece sp. ATCC 51142]
 gi|171700889|gb|ACB53870.1| ferredoxin [Cyanothece sp. ATCC 51142]
          Length = 75

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DCV+ CPV C +EG        ++  I    CIDCG+C   CPV+ AI
Sbjct: 5  IVTETCE--GVADCVDACPVACIHEGPGKNVKGTDWYWIDFATCIDCGICLQVCPVEGAI 62

Query: 56 KPDTEPGLE 64
           P+  P L+
Sbjct: 63 VPEERPDLQ 71


>gi|118445132|ref|YP_879222.1| ferredoxin [Clostridium novyi NT]
 gi|253680812|ref|ZP_04861615.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|331270643|ref|YP_004397135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
          [Clostridium botulinum BKT015925]
 gi|118135588|gb|ABK62632.1| ferredoxin [Clostridium novyi NT]
 gi|253562661|gb|EES92107.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|329127193|gb|AEB77138.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium botulinum BKT015925]
          Length = 57

 Score = 40.8 bits (94), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + ++C+ C    C   CPV    +G++   I  + CIDCG C   CPV AI  +
Sbjct: 1  MAFKIGDSCVSCGS--CASECPVGAISQGDSQFEIDANSCIDCGNCANVCPVGAIAAE 56


>gi|225619304|ref|YP_002720530.1| hypothetical protein BHWA1_00357 [Brachyspira hyodysenteriae WA1]
 gi|225214123|gb|ACN82857.1| hypothetical protein BHWA1_00357 [Brachyspira hyodysenteriae WA1]
          Length = 55

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M  V+  +C+ C    C+  C  D   EG N   I PD+C DC  CE  CP +AI P
Sbjct: 1  MPRVINNDCVACGS--CLPECAFDAISEG-NIYVIDPDKCTDCAACEAVCPSNAINP 54


>gi|84488976|ref|YP_447208.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
 gi|84372295|gb|ABC56565.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
          Length = 59

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          Y + +NC+ C    CV  CP+D   EG  ++ I  ++C+ CGVC   CP  AI+
Sbjct: 6  YKINDNCVACGL--CVNACPIDAIAEGNPYV-IDEEKCVGCGVCAEACPTQAIE 56


>gi|295677023|ref|YP_003605547.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1002]
 gi|295436866|gb|ADG16036.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1002]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAI 64



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|189424812|ref|YP_001951989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          lovleyi SZ]
 gi|189421071|gb|ACD95469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          lovleyi SZ]
          Length = 55

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M + +T++C  C    C + CPV+   E  +   I  D CIDCG C   CPV+AI  
Sbjct: 1  MAHTITDDCTNCAA--CEDSCPVNAISEQGSKRVIDADTCIDCGACVDTCPVNAIHA 55


>gi|157963951|ref|YP_001503985.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848951|gb|ABV89450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 559

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V TENC LC    CV  CP     +G +  A+H    +C+ CG+CE  CP        E 
Sbjct: 424 VNTENCTLC--MSCVATCPTMALTDGGDRPALHFVEQDCVQCGLCETACP--------EK 473

Query: 62  GLELWLKINSEYATQWPNITTKKES 86
            + L  ++N + A +    T  +E+
Sbjct: 474 VISLTPQVNFDKAARQERQTLHEEA 498


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C  VCPV     + +    I  D+CI CG C   CPV+AI
Sbjct: 541 LEYFITDKCIGC--TKCARVCPVTAISGKVKEKHVIDTDKCIKCGACMDACPVNAI 594


>gi|57238533|ref|YP_179664.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           RM1221]
 gi|57167337|gb|AAW36116.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           RM1221]
 gi|315058963|gb|ADT73292.1| Formate dehydrogenase-O, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|86149326|ref|ZP_01067557.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152455|ref|ZP_01070660.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88596633|ref|ZP_01099870.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613584|ref|YP_001001157.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|148925675|ref|ZP_01809363.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157415732|ref|YP_001482988.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167006050|ref|ZP_02271808.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205356647|ref|ZP_03223409.1| putative formate dehydrogenase iron sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218563110|ref|YP_002344889.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|283956886|ref|ZP_06374359.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|85840108|gb|EAQ57366.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843340|gb|EAQ60550.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87249822|gb|EAQ72781.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88191474|gb|EAQ95446.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360816|emb|CAL35616.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|145845685|gb|EDK22776.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157386696|gb|ABV53011.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205345504|gb|EDZ32145.1| putative formate dehydrogenase iron sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|283791612|gb|EFC30408.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|284926716|gb|ADC29068.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307748373|gb|ADN91643.1| Formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315927458|gb|EFV06796.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930114|gb|EFV09241.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|317497525|ref|ZP_07955844.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895208|gb|EFV17371.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V E C  C    C+EVCP       + +  I  ++CI CG C+  CP  AI     P
Sbjct: 112 AFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCPYGAIYERKRP 171



 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+  E CI C    C +VCP    YE +   A                 I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKCGQ--CKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCG 200

Query: 45  VCEPECPVDAIKPDTE 60
           +C   CP  AI   ++
Sbjct: 201 MCMVNCPFGAIADKSQ 216


>gi|157830634|pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
          Length = 55

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y + ++C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A
Sbjct: 1  AYKIADSCVSCGA--CASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGA 51


>gi|269468926|gb|EEZ80510.1| electron transport complex protein RnfB [uncultured SUP05 cluster
           bacterium]
          Length = 147

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-D 58
           + +V  + CI C  T C++ CPVD F      +  +  DEC  C +C P CPVD I   +
Sbjct: 72  VVFVDEQICIGC--TLCIQACPVDAFVGASKVMTTVIADECTGCDLCIPVCPVDCIHVLE 129

Query: 59  TEPGLELWLKINSEYA 74
            +P L  ++   SE A
Sbjct: 130 VQPTLNTYVPDLSEVA 145


>gi|257066615|ref|YP_003152871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Anaerococcus prevotii DSM 20548]
 gi|256798495|gb|ACV29150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaerococcus prevotii DSM 20548]
          Length = 57

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI
Sbjct: 1  MAYRIDENTCISCGS--CEGECPVGAISQGDAAYEIDADACIDCGSCAAVCPVEAI 54


>gi|227499762|ref|ZP_03929862.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
 gi|227218148|gb|EEI83414.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
          Length = 57

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI
Sbjct: 1  MAYRIDENTCISCGS--CEGECPVGAIAQGDAAYEIDADACIDCGSCAAVCPVEAI 54


>gi|126664787|ref|ZP_01735771.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
 gi|126631113|gb|EBA01727.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           LC H        T C++VCP +  +   + + I+ D C  CG C   CP  A+  +  P
Sbjct: 280 LCAHSRANQPGCTRCLDVCPTEAIFSAGDHVEINSDICAGCGSCAAVCPTSAVTMNETP 338



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 18/59 (30%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           ++ C LC    CV +CP          L  HPD          C+ CGVCE  CP  AI
Sbjct: 512 SDKCTLC--LACVSLCPTGA-------LGDHPDRPEVQFTENACVQCGVCESTCPETAI 561


>gi|86605090|ref|YP_473853.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86553632|gb|ABC98590.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
          Length = 75

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCVE CPV C + G+       ++  I    CIDCG+C   CPV+ AI P+ +P L+
Sbjct: 14 ADCVEACPVACIHPGDGKNAKGTDYFWIDFATCIDCGICLQVCPVEGAILPEEKPHLQ 71


>gi|86151949|ref|ZP_01070162.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124937|ref|YP_004066941.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841057|gb|EAQ58306.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315018659|gb|ADT66752.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 213

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 112


>gi|257469186|ref|ZP_05633280.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
 gi|317063434|ref|ZP_07927919.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313689110|gb|EFS25945.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 644

 Score = 40.8 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C   + +    +    C  CG C   CPV AI
Sbjct: 215 LKFRITEKCIGC--TACARVCPVKCISGKIKERHILDTSRCTHCGQCVAACPVGAI 268


>gi|295106095|emb|CBL03638.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Gordonibacter pamelaeae 7-10-1-b]
          Length = 382

 Score = 40.8 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C + CP D     +N LA+  + C+ CG C   CP +A+ P
Sbjct: 39 CTDACPTDAVGAKDNVLALDNERCVACGACTTVCPTEALIP 79


>gi|22299637|ref|NP_682884.1| ferredoxin-like protein [Thermosynechococcus elongatus BP-1]
 gi|22295821|dbj|BAC09646.1| ferredoxin-like protein [Thermosynechococcus elongatus BP-1]
          Length = 75

 Score = 40.8 bits (94), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCVE CPV C +       +G ++  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 14 ADCVEACPVACIHPGPGKNAKGTDWFWIDFATCIDCGICLQVCPVEGAIVPEERPDLQ 71


>gi|291279714|ref|YP_003496549.1| formate dehydrogenase subunit beta [Deferribacter desulfuricans
           SSM1]
 gi|290754416|dbj|BAI80793.1| formate dehydrogenase, beta subunit [Deferribacter desulfuricans
           SSM1]
          Length = 195

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCPVD  Y+ E+  + ++ D CI CG C   CP  A
Sbjct: 51  ISVACMHCSDAPCIAVCPVDALYQREDGIVLVNKDVCIGCGYCFFACPFGA 101


>gi|331006635|ref|ZP_08329919.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
 gi|330419550|gb|EGG93932.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
          Length = 216

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP-D 58
           + Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I    
Sbjct: 114 VAYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVDECTGCDLCVEPCPVDCIDMLP 171

Query: 59  TEPGLELWL-----KINSEYATQWPNITTKKESLPSA 90
            E  L+ W      K+++  AT    + +K +S PS+
Sbjct: 172 VEQTLQEWKWTAPNKMSNLIATDRAPLISKSDSAPSS 208


>gi|261378107|ref|ZP_05982680.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
 gi|269145561|gb|EEZ71979.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C+  CP D       F+  +  DEC  CG+C   CPVD I
Sbjct: 71  LAWIDESACIGC--TACIRACPTDAIMGASKFMHTVIADECTGCGLCIAPCPVDCI 124


>gi|114561242|ref|YP_748755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332535|gb|ABI69917.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 559

 Score = 40.8 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           M  + +E C LC    CV  CP     +G +  A+     +C+ CG+CE  CP + I
Sbjct: 421 MVSINSEKCTLC--LSCVATCPTQALKDGGDAPALKFVEQDCVQCGLCEAACPENVI 475


>gi|303236983|ref|ZP_07323558.1| ferredoxin [Prevotella disiens FB035-09AN]
 gi|302482848|gb|EFL45868.1| ferredoxin [Prevotella disiens FB035-09AN]
          Length = 55

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++ +CI C    C++ CPV    EG+ +  I  D C +CG C   CP +AI 
Sbjct: 1  MAYVISNDCIACGT--CIDECPVGAISEGDIY-NIDADACTECGTCASVCPSEAIS 53


>gi|296108767|ref|YP_003615716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295433581|gb|ADG12752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 150

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C+   C+E+CPVD  Y  E    ++ ++CI C +C   CP+ AI
Sbjct: 42 CMQCEKAPCMEICPVDAIYLEEGIPIVNKEKCIGCAMCVIACPIGAI 88


>gi|296110006|ref|YP_003616955.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434820|gb|ADG13991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 166

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C EVCPV+  Y  ++++ +  ++CI CG+C   CP  AI
Sbjct: 44 CQHCRSAPCKEVCPVEAIYFKDSYVYLDLEKCIGCGLCALACPFGAI 90


>gi|224368236|ref|YP_002602399.1| IorA1 [Desulfobacterium autotrophicum HRM2]
 gi|223690952|gb|ACN14235.1| IorA1 [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + VT+ C    H DC++      F+  E  + I P+ C+ C +C   CP +AI P
Sbjct: 561 FTVTDRCK--NHRDCMDSIACPSFFIEEGRVKIDPNTCVGCALCAQICPENAIVP 613


>gi|158634532|gb|ABW76118.1| Fe-hydrogenase 3 [Trimastix pyriformis]
          Length = 445

 Score = 40.8 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 116 YFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPYHAI 168


>gi|167766696|ref|ZP_02438749.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|167711633|gb|EDS22212.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|291558362|emb|CBL37162.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V E C  C    C+EVCP       + +  I  ++CI CG C+  CP  AI     P
Sbjct: 112 AFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCPYGAIYERKRP 171



 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+  E CI C    C +VCP    YE +   A                 I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKCGQ--CKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCG 200

Query: 45  VCEPECPVDAIKPDTE 60
           +C   CP  AI   ++
Sbjct: 201 MCMVNCPFGAIADKSQ 216


>gi|298244772|ref|ZP_06968578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297552253|gb|EFH86118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 263

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++++ C  C H  C+E CP       E   + + PD C  CG C P CP   +  +   G
Sbjct: 74  MLSDVCKHCTHAGCMEACPTGAIVRNEFGDVYVQPDICNGCGYCVPSCPFGVVDRNETTG 133

Query: 63  L 63
           L
Sbjct: 134 L 134


>gi|160893574|ref|ZP_02074358.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|163814830|ref|ZP_02206218.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC
          27759]
 gi|156864559|gb|EDO57990.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|158449769|gb|EDP26764.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC
          27759]
          Length = 56

 Score = 40.8 bits (94), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+ ++CI C    C   CPV    +      I   +CI CG C   CPV  I 
Sbjct: 1  MAFVIGDSCIGCGS--CAGSCPVGAISDNGGVFVIDGSQCISCGACAGSCPVGTIS 54


>gi|251780311|ref|ZP_04823231.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084626|gb|EES50516.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 494

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC        +    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAITYVDGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162


>gi|253581620|ref|ZP_04858845.1| hydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725]
          Length = 644

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C   + +    +    C  CG C   CPV AI
Sbjct: 215 LKFRITEKCIGC--TACARVCPVKCISGKIKERHILDTSRCTHCGQCVAACPVGAI 268


>gi|209516646|ref|ZP_03265499.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          H160]
 gi|209502921|gb|EEA02924.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          H160]
          Length = 412

 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAI 64



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|218961482|ref|YP_001741257.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
          bidirectional hydrogenase), subunit alpha (hymC-like)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730139|emb|CAO81051.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
          bidirectional hydrogenase), subunit alpha (hymC-like)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 435

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          ++ +NC  C  T CV VCP +     ++   I P  C+DCG C   C   AI P ++P L
Sbjct: 12 ILADNCTGC--TACVRVCPTEAIRVRDHKANIDPYRCVDCGNCVNVCRFHAIIPLSDP-L 68

Query: 64 ELWLKINSEYA 74
          E+  K   + A
Sbjct: 69 EIIHKFKYKLA 79


>gi|83950402|ref|ZP_00959135.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
          nubinhibens ISM]
 gi|83838301|gb|EAP77597.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
          nubinhibens ISM]
          Length = 134

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 18 VEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          + VCPVDCFY+ E  + +H  D CI CG C   CP  A
Sbjct: 1  MAVCPVDCFYQTEEGVVLHSKDLCIGCGYCFYACPFGA 38


>gi|315931016|gb|EFV09991.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
          subsp. jejuni 327]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
          +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A
Sbjct: 52 SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGA 99


>gi|294340543|emb|CAZ88928.1| Putative Electron transport complex, RnfABCDGE type, B subunit
           (RnfB) [Thiomonas sp. 3As]
          Length = 210

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 21/103 (20%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPGLEL 65
           CI C  T C++ CPVD      +    +  D C  C +C P CPVD I+ +  T+P L  
Sbjct: 88  CIGC--TLCIQACPVDAIAGVSKRMHTVIEDWCTGCALCLPPCPVDCIRMEALTDPALAT 145

Query: 66  WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
               N+     W           S A+ D  +Q+Y ++   +P
Sbjct: 146 RSGWNA-----W-----------SPAQADEARQRYARHLERHP 172


>gi|169831040|ref|YP_001717022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637884|gb|ACA59390.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 995

 Score = 40.8 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    CV VCP +      N   I P +C  CG+C  ECP  AI
Sbjct: 919 VTPEKCAAC--LGCVRVCPFNVPVIAGNISWIEPVQCQGCGICVAECPNAAI 968


>gi|332973049|gb|EGK10986.1| iron-sulfur cluster-binding protein [Kingella kingae ATCC 23330]
          Length = 285

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPVDAIMGASKLMHTVLADECTGCGLCVAPCPVDCI 124


>gi|255322980|ref|ZP_05364116.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
 gi|255299842|gb|EET79123.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           I C+H TD  C +VCPVDCFY   + + +H  ++CI CG C   CP  A
Sbjct: 54  IACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|194474799|gb|ACF74512.1| arsenate respiratory reductase iron sulfur subunit
           [Halarsenatibacter silvermanii]
          Length = 229

 Score = 40.4 bits (93), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 9   CILCKHTDCVEVCPVD---CFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C +  CVE CPVD    F + E N + +  D CI C  CE ECP   I  + E    
Sbjct: 58  CNHCDNAPCVEACPVDPKAIFKDSESNLVLMDADRCIGCRNCENECPYGVISYNAEEAHP 117

Query: 65  LW 66
            W
Sbjct: 118 FW 119


>gi|225374841|ref|ZP_03752062.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
 gi|225213302|gb|EEG95656.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEPGRLRSHIDPQKCKECGKCAQACPYNAIAHLKRP 151


>gi|307266193|ref|ZP_07547736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918797|gb|EFN49028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 126

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 29/65 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y+    CI CK+  C+ VCP          + I  ++C+ CG+C   CP   IK  +   
Sbjct: 44  YLEVVTCIQCKNAVCIRVCPSKAIKRQNGIVKIDKEKCVGCGICAQYCPQSVIKVISGKA 103

Query: 63  LELWL 67
            +  L
Sbjct: 104 FKCEL 108


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 40.4 bits (93), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           + YV+ + CI C  T C  VCPV C  EG+      I  D+CI CG C  +C   AI
Sbjct: 558 LKYVINDKCIGC--TACARVCPVSCI-EGKVKEKHVIEQDKCIKCGACYDKCKFSAI 611


>gi|149201541|ref|ZP_01878515.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149144589|gb|EDM32618.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 651

 Score = 40.4 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V TE+C LC    CV +CP     + E+   L    D C+ CG+C   CP  AI    EP
Sbjct: 498 VNTESCTLC--LSCVSLCPSGALMDNEDKPQLRFQEDACLQCGICATICPEKAIT--LEP 553

Query: 62  GLEL 65
            + L
Sbjct: 554 RMNL 557



 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C+++CP        + ++I P  C  CG C   CP  AI  D  P
Sbjct: 280 SKCLDICPTGAISPDGDHVSIDPMICAGCGACAARCPSGAITYDAPP 326


>gi|188587767|ref|YP_001919801.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498048|gb|ACD51184.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 494

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC        +    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAITYVDGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162


>gi|134299648|ref|YP_001113144.1| hydrogenase large subunit [Desulfotomaculum reducens MI-1]
 gi|134052348|gb|ABO50319.1| hydrogenase large subunit domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+ C  C    C   CP       +N   I  + C++CG C   CP +AI   T P
Sbjct: 93  YVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDQNSCVECGKCANACPYNAIIEVTRP 151


>gi|127510991|ref|YP_001092188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636286|gb|ABO21929.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 558

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V T+NC LC    CV  CP     +G    A++  E  C+ CG+CE  CP   I
Sbjct: 423 VNTDNCTLC--LSCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVI 474


>gi|325958243|ref|YP_004289709.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329675|gb|ADZ08737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 143

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           C+ VCP D   E +  + I  D CI CG+C   CP+ AI  D E G+     +  +  T 
Sbjct: 46  CMTVCPEDAIVEIDGAIVIMEDSCIGCGLCRDSCPIGAIHMD-EYGIAKKCNLCIDKETP 104

Query: 77  WPNITTKKESLPSAAKMDGVKQKYEKY 103
              +T  K++L   ++ D + QK +K 
Sbjct: 105 ACVLTCPKDALKVDSE-DILAQKRDKI 130


>gi|262066053|ref|ZP_06025665.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380303|gb|EFE87821.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    CVEVCP +C         I  + C+ CG C   CPV A++
Sbjct: 153 YFITDKCIGCNK--CVEVCPQNCIITDSVPYVIEQNHCLHCGNCFTVCPVGAVE 204


>gi|284988958|ref|YP_003407512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062203|gb|ADB73141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 355

 Score = 40.4 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C H  C++VCP    +  E   + +  D C  CG C P CP   I+
Sbjct: 177 CKHCTHAGCLDVCPTGALFRTEFGTVVVQGDICNGCGYCVPSCPYGVIE 225


>gi|154483117|ref|ZP_02025565.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
 gi|149735925|gb|EDM51811.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
          Length = 504

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 26/57 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +T  C  C    C+EVCP D     +    I  D+CI CG C   CP +A+     P
Sbjct: 115 ITNACQGCLEHPCIEVCPKDAIKMVKGRSVIDQDKCIKCGKCASACPYNAVVKQERP 171


>gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
 gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
          Length = 526

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y + E CI C    C  +CP      E  N   I+ D+CI CG C+  CP+DAI
Sbjct: 470 LNYDIGEACIGCGK--CKRLCPAQAISGEVRNKHEINQDKCIKCGQCKENCPIDAI 523


>gi|223040716|ref|ZP_03610984.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
 gi|222878000|gb|EEF13113.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           I C+H TD  C +VCPVDCFY   + + +H  ++CI CG C   CP  A
Sbjct: 54  IACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|15893595|ref|NP_346944.1| ferredoxin [Clostridium acetobutylicum ATCC 824]
 gi|15023146|gb|AAK78284.1|AE007545_1 Ferredoxin [Clostridium acetobutylicum ATCC 824]
 gi|325507715|gb|ADZ19351.1| Ferredoxin [Clostridium acetobutylicum EA 2018]
          Length = 56

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ C+ C    C   CPV    +G+    I  D CI+CG C   CPV A
Sbjct: 1  MAYKITDACVSCGS--CASECPVSAISQGDTQFVIDADTCIECGNCANVCPVGA 52


>gi|227828791|ref|YP_002830571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238620983|ref|YP_002915809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|227460587|gb|ACP39273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238382053|gb|ACR43141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 6   TENCILCKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T   I C H D   C++VCP +   + E   + I  D+CI CG C   CP +A+K + E
Sbjct: 46  TALSIACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|157165264|ref|YP_001466214.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
 gi|112801511|gb|EAT98855.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           I C+H TD  C +VCPVDCFY   + + +H  ++CI CG C   CP  A
Sbjct: 54  IACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|317969911|ref|ZP_07971301.1| iron-sulfur cluster-binding protein [Synechococcus sp. CB0205]
          Length = 74

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           DCV+ CPV C         +G  F  I  D CIDCG+C   CPV  AI P+ +P L+
Sbjct: 14 ADCVDACPVACINPGTGANAKGTEFYWIDFDTCIDCGICLQVCPVAGAIVPEEKPELQ 71


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T++C  C  T CV+ CP D    E +    I  DECI CG C   CP DAI
Sbjct: 542 LDYKITDDCEGC--TKCVDECPADAISGEAKEQHTIDVDECIKCGACVDVCPFDAI 595


>gi|293376326|ref|ZP_06622563.1| ferredoxin [Turicibacter sanguinis PC909]
 gi|292645015|gb|EFF63088.1| ferredoxin [Turicibacter sanguinis PC909]
          Length = 55

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M   + + CI C    C   CPV+C  EG+ + +I  D CIDCG CE  CP ++I
Sbjct: 1  MPRKILDTCIACGS--CAAECPVECISEGDIY-SIDADVCIDCGACEAVCPTESI 52


>gi|167757175|ref|ZP_02429302.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402]
 gi|167703350|gb|EDS17929.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402]
          Length = 202

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+++  CI C    C   CP  C   G  +  I  D C+ CG+C   CPV AI
Sbjct: 149 YLISNRCIACDR--CKRECPQQCIKSGSKY-KIMQDHCLHCGLCYENCPVRAI 198


>gi|147676934|ref|YP_001211149.1| ferredoxin-like protein [Pelotomaculum thermopropionicum SI]
 gi|146273031|dbj|BAF58780.1| ferredoxin-like protein [Pelotomaculum thermopropionicum SI]
          Length = 91

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 6  TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          TE C  C H  C+  CP  C+    EN +A H + C++CG C   C   A+K
Sbjct: 25 TEKCRACLHRACLAACPARCYLPHPENGVAFHYEHCLECGTCFLICDHGALK 76


>gi|71279765|ref|YP_268923.1| electron transport complex protein RnfB [Colwellia psychrerythraea
           34H]
 gi|71145505|gb|AAZ25978.1| electron transport complex, RnfABCDGE type, B subunit [Colwellia
           psychrerythraea 34H]
          Length = 189

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK--- 56
           + +V+ E+CI C  T C++ CPVD      +    I  DEC  C +C   CPVD I+   
Sbjct: 111 VAFVIEEDCIGC--TKCIQACPVDAIIGAAKQMHTIIIDECTGCDLCVAPCPVDCIEMRE 168

Query: 57  -PDT 59
            PDT
Sbjct: 169 LPDT 172


>gi|257460010|ref|ZP_05625114.1| formate dehydrogenase iron-sulfur subunit [Campylobacter gracilis
           RM3268]
 gi|257442451|gb|EEV17590.1| formate dehydrogenase iron-sulfur subunit [Campylobacter gracilis
           RM3268]
          Length = 185

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           I C+H TD  C +VCPV CFY   + + +H  D+CI CG C   CP  A
Sbjct: 55  IACQHCTDAPCAQVCPVQCFYIRTDGVVLHDKDKCIGCGYCLYACPFGA 103


>gi|90413855|ref|ZP_01221842.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum 3TCK]
 gi|90325166|gb|EAS41669.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum 3TCK]
          Length = 205

 Score = 40.4 bits (93), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFEQTEDGIVRHDKDLCIGCGYCLFACPFGA 103


>gi|296109053|ref|YP_003616002.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295433867|gb|ADG13038.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 62

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 12 CKHTDCVEV---CPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          CK  DC E    CP++ F  EG+  +  +PDEC  CGVCE  CP  A+K + E
Sbjct: 10 CKGPDCAECVNNCPMEVFEIEGDKVVVANPDECTYCGVCEDVCPTSAVKVEPE 62


>gi|257065141|ref|YP_003144813.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256792794|gb|ACV23464.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 209

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
            TY V+  C  C    CVE CPV    + E+   ++  P+ CI CG C   CP  A + D
Sbjct: 59  FTYYVSSACNHCATPACVEACPVGTMTKHEDTGLVYNDPETCIGCGSCVNACPYGAPQVD 118

Query: 59  TE 60
           TE
Sbjct: 119 TE 120


>gi|227831524|ref|YP_002833304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|229580472|ref|YP_002838872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284999076|ref|YP_003420844.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227457972|gb|ACP36659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228011188|gb|ACP46950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284446972|gb|ADB88474.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|323475826|gb|ADX86432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
 gi|323478601|gb|ADX83839.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 6   TENCILCKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T   I C H D   C++VCP +   + E   + I  D+CI CG C   CP +A+K + E
Sbjct: 46  TALSIACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|170696011|ref|ZP_02887149.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          graminis C4D1M]
 gi|170139091|gb|EDT07281.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          graminis C4D1M]
          Length = 413

 Score = 40.4 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAI 64



 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|282859228|ref|ZP_06268350.1| ferredoxin [Prevotella bivia JCVIHMP010]
 gi|282588047|gb|EFB93230.1| ferredoxin [Prevotella bivia JCVIHMP010]
          Length = 55

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C++ CPV+   EG+ + +I  D C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CIDECPVEAISEGDIY-SIDADACTECGTCASVCPNEAIS 53


>gi|229585998|ref|YP_002844500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228021048|gb|ACP56455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 6   TENCILCKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T   I C H D   C++VCP +   + E   + I  D+CI CG C   CP +A+K + E
Sbjct: 46  TALSIACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|54309047|ref|YP_130067.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum SS9]
 gi|46913479|emb|CAG20265.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum SS9]
          Length = 205

 Score = 40.4 bits (93), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFEQTEDGIVRHDKDLCIGCGYCLFACPFGA 103


>gi|291283740|ref|YP_003500558.1| putative polyferredoxin [Escherichia coli O55:H7 str. CB9615]
 gi|290763613|gb|ADD57574.1| Putative polyferredoxin [Escherichia coli O55:H7 str. CB9615]
 gi|320657197|gb|EFX25006.1| putative polyferredoxin [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320662803|gb|EFX30135.1| putative polyferredoxin [Escherichia coli O55:H7 str. USDA 5905]
          Length = 284

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CI+C VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIECAVCQFICPQEAIRGVNSP 69


>gi|163740593|ref|ZP_02147987.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386451|gb|EDQ10826.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 629

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 3   YVVTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV TE  +LC H        T C+++CP        + ++I P  C  CG C   CP  A
Sbjct: 240 YVRTEP-LLCAHSRAGQTGCTRCLDICPTGAISPAGDHVSIDPMICAGCGSCASLCPSGA 298

Query: 55  IKPDTEPGLELWLKINS 71
           I  D  P   L  +I +
Sbjct: 299 ITYDAPPTDALMRRIQT 315



 Score = 40.4 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V ++NC LC    CV +CP     +  +   L    D C+ CG+C   CP DAI
Sbjct: 476 VSSDNCTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCATICPEDAI 527


>gi|92118585|ref|YP_578314.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801479|gb|ABE63854.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 674

 Score = 40.4 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C LC    CV  CP    Y+      L    D C+ CG+C+  CP   IK
Sbjct: 516 VDVEGCTLC--LSCVSACPTGALYDDPERPVLRFTEDACVQCGLCQATCPEKVIK 568


>gi|39997802|ref|NP_953753.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|39984694|gb|AAR36080.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|298506743|gb|ADI85466.1| ferredoxin-related protein [Geobacter sulfurreducens KN400]
          Length = 56

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M++ ++++C  C    CV+ CPV+      +   I  D CIDCG C   CPV AI 
Sbjct: 1  MSHAISDDCTNCGA--CVDSCPVNAIAPAGDKHKIDADTCIDCGACVDTCPVSAIS 54


>gi|229580878|ref|YP_002839277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228011594|gb|ACP47355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 6   TENCILCKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T   I C H D   C++VCP +   + E   + I  D+CI CG C   CP +A+K + E
Sbjct: 46  TALSIACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|254520968|ref|ZP_05133023.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|219718559|gb|EED37084.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 137

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           +  +V  +CI C  T C++ CPVD    G  ++  +  D C  C +C P CPVD I+
Sbjct: 79  VALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIE 133


>gi|158334537|ref|YP_001515709.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acaryochloris marina MBIC11017]
 gi|158304778|gb|ABW26395.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Acaryochloris
          marina MBIC11017]
          Length = 75

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPD-------ECIDCGVCEPECPVDA 54
           DCV+ CPV C +EG     I  D        CIDCG+C+  CPVD 
Sbjct: 14 ADCVDACPVACIHEGPGKNVIGTDWYWIDFSTCIDCGICQQVCPVDG 60


>gi|162605692|ref|XP_001713361.1| RNase L inhibitor [Guillardia theta]
 gi|13794293|gb|AAK39670.1|AF083031_27 RNase L inhibitor [Guillardia theta]
          Length = 598

 Score = 40.4 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 16 DCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +C + CPV+     C    +  N + IH   CI CG+C  +CP DAIK
Sbjct: 29 ECKKNCPVEKAGKLCIKIEDSNNIVNIHEINCIGCGICVKKCPYDAIK 76


>gi|330836748|ref|YP_004411389.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta coccoides DSM 17374]
 gi|329748651|gb|AEC02007.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta coccoides DSM 17374]
          Length = 55

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +T+ CI C    C   CPV+   EG+ ++ I  D CIDCG C   CP  AI
Sbjct: 1  MAHKITDACIACGT--CQPECPVNAISEGDIYV-IDADACIDCGACASACPTSAI 52


>gi|126656100|ref|ZP_01727484.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cyanothece sp.
          CCY0110]
 gi|126622380|gb|EAZ93086.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cyanothece sp.
          CCY0110]
          Length = 75

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C +EG        ++  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 14 ADCVDACPVACIHEGPGKNVKGTDWYWIDFATCIDCGICLQVCPVEGAILPEERPDLQ 71


>gi|124027372|ref|YP_001012692.1| putative ATPase RIL [Hyperthermus butylicus DSM 5456]
 gi|123978066|gb|ABM80347.1| RNase L inhibitor, ATPase [Hyperthermus butylicus DSM 5456]
          Length = 613

 Score = 40.4 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 11 LCK----HTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          LCK    H +C+  CPV+        F E      I+ + C+ CG+C  +CP  AI
Sbjct: 11 LCKPSKCHRECIAFCPVNLTGGKAIEFDEARRKPVIYEETCVGCGICVKKCPFKAI 66


>gi|293415783|ref|ZP_06658426.1| polyferredoxin [Escherichia coli B185]
 gi|291433431|gb|EFF06410.1| polyferredoxin [Escherichia coli B185]
          Length = 284

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CI+C VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIECAVCQFICPQEAIRGVNSP 69


>gi|237735737|ref|ZP_04566218.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381482|gb|EEO31573.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 203

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+++  CI C    C   CP  C   G  +  I  D C+ CG+C   CPV AI
Sbjct: 150 YLISNRCIACDR--CKRECPQQCIKSGSKY-KIMQDHCLHCGLCYENCPVRAI 199


>gi|157377554|ref|YP_001476154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319928|gb|ABV39026.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 563

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           ++ C LC    CV  CP     +G +  A+H    +C+ CG+CE  CP   I
Sbjct: 430 SDKCTLC--LSCVSTCPTQALTDGGDKPALHFVEQDCVQCGLCESACPEKVI 479


>gi|86748357|ref|YP_484853.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris HaA2]
 gi|86571385|gb|ABD05942.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris HaA2]
          Length = 607

 Score = 40.4 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VVT  C  C+   C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 544 VVTSQCTACQ--SCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 601

Query: 59  TEP 61
           T P
Sbjct: 602 TPP 604


>gi|298375682|ref|ZP_06985639.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
 gi|298268182|gb|EFI09838.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
          Length = 459

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGL 63
           + CI C H  C++ CP       +    IH D C+DCG C   CP +AI   + D +   
Sbjct: 15  DRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72

Query: 64  ELWLKIN---SEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           +   ++    + +  Q+   TT+KE + +  ++ G    ++  F+ +
Sbjct: 73  DYRCRVALMPTVFIGQFSKYTTEKEIISAVMEL-GFTHVFQVEFTAD 118


>gi|241759531|ref|ZP_04757634.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
 gi|241320088|gb|EER56449.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
          Length = 283

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 81  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMVPVSQSFL 136

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                ++T          + P  A  +  + ++E++
Sbjct: 137 PSARRFST---------SAEPRFAAAEHAQSRFERH 163


>gi|20092258|ref|NP_618333.1| hypothetical protein MA3446 [Methanosarcina acetivorans C2A]
 gi|19917495|gb|AAM06813.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 360

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VV   CI C    CVE+CPV       +   I P  CI CG C   CP  AI  + E  
Sbjct: 181 HVVEAKCIGCGR--CVEICPVGAASLEGDVSRIDPGICISCGQCMEVCPEGAIDINWEED 238

Query: 63  LELWLKINSEYA 74
           +  +L+  +EYA
Sbjct: 239 IPEFLECLTEYA 250


>gi|111018602|ref|YP_701574.1| Fe-S ferredoxin-type protein [Rhodococcus jostii RHA1]
 gi|110818132|gb|ABG93416.1| probable Fe-S ferredoxin-type protein [Rhodococcus jostii RHA1]
          Length = 110

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          VV + C+ C    C++VCP D F  G + + +  H ++C  C +CE  CP DA+
Sbjct: 5  VVADRCVQCDI--CIKVCPTDVFRRGTDGVPVVAHQEDCQTCFMCEANCPTDAL 56


>gi|17230406|ref|NP_486954.1| hypothetical protein asl2914 [Nostoc sp. PCC 7120]
 gi|75907209|ref|YP_321505.1| 4Fe-4S ferredoxin [Anabaena variabilis ATCC 29413]
 gi|17132008|dbj|BAB74613.1| asl2914 [Nostoc sp. PCC 7120]
 gi|75700934|gb|ABA20610.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anabaena
          variabilis ATCC 29413]
          Length = 74

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C +EG        ++  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 14 ADCVDACPVACIHEGPGKNVKGTDWYWIDFSTCIDCGICLQVCPVEKAIVPEERPDLQ 71


>gi|67925387|ref|ZP_00518736.1| 4Fe-4S ferredoxin, iron-sulfur binding [Crocosphaera watsonii WH
          8501]
 gi|67852761|gb|EAM48171.1| 4Fe-4S ferredoxin, iron-sulfur binding [Crocosphaera watsonii WH
          8501]
          Length = 75

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DC + CPV C ++G        ++  I  D CIDCG+C   CPV+ AI
Sbjct: 5  IVTEVCE--GIADCADACPVACIHDGPGKNIKGTDWYWIDFDTCIDCGICLQVCPVEGAI 62

Query: 56 KPDTEPGLE 64
           P+  P L+
Sbjct: 63 APEERPDLQ 71


>gi|331653947|ref|ZP_08354948.1| putative polyferredoxin [Escherichia coli M718]
 gi|331048796|gb|EGI20872.1| putative polyferredoxin [Escherichia coli M718]
          Length = 284

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CVE CP       E  +A+  ++CI+C VC+  CP +AI+    P
Sbjct: 25 CVEACPAQALTLTEEGIAVDAEQCIECAVCQFICPQEAIRGVNSP 69


>gi|126664781|ref|ZP_01735765.1| formate dehydrogenase, iron-sulfur subunit, putative
          [Marinobacter sp. ELB17]
 gi|126631107|gb|EBA01721.1| formate dehydrogenase, iron-sulfur subunit, putative
          [Marinobacter sp. ELB17]
          Length = 134

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 18 VEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
          + VCP DCFY+ E+ + +H  D CI CG C   CP  A
Sbjct: 1  MAVCPTDCFYQTEDGIVLHSKDLCIGCGYCFYACPFGA 38


>gi|325478783|gb|EGC81894.1| ferredoxin [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 57

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI
Sbjct: 1  MAYRIDENTCISCGT--CEGECPVGAISQGDAAYEIDADACIDCGSCAAVCPVEAI 54


>gi|255993975|ref|ZP_05427110.1| conserved domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993643|gb|EEU03732.1| conserved domain protein [Eubacterium saphenum ATCC 49989]
          Length = 55

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C+  CPV+   EG  + +I P+ CIDCG C   C   AI
Sbjct: 1  MAYEITDACVACGA--CISECPVEAISEGSPY-SIDPNTCIDCGACASVCGAAAI 52


>gi|218887758|ref|YP_002437079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758712|gb|ACL09611.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 180

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C   CP   + + +   + ++ D CI CG C   CPVDAI  D E GL
Sbjct: 54  CLACNPAPCALACPTGAYVQRKGGGVKVNRDLCIRCGNCAAACPVDAIHLDGETGL 109


>gi|253702471|ref|YP_003023660.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251777321|gb|ACT19902.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. M21]
          Length = 759

 Score = 40.4 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +T++C  C    CV  CPV      +++  I P+ CI CG C   CP  A
Sbjct: 7  ITDHCRKC--YSCVRSCPVKAIKVEKSYTEIIPERCIGCGNCMSHCPQHA 54


>gi|89897355|ref|YP_520842.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336803|dbj|BAE86398.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 228

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           LC H D   CV+ CP    Y+ +  L +H P++CI C  C   CP + I  +++    +W
Sbjct: 57  LCNHCDNAACVKACPTKAMYKDDKGLTLHNPNKCIGCKSCMQACPYEVINYNSKEPHGIW 116


>gi|219670089|ref|YP_002460524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219540349|gb|ACL22088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 56

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+   CI C    C   CPV     G++   I  D C DCG C   CP  A  P
Sbjct: 1  MAYVINSECISCGA--CEAECPVGAISAGDDLYVIDADTCTDCGSCAGVCPTGAPNP 55


>gi|210615774|ref|ZP_03290755.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
 gi|210150110|gb|EEA81119.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
          Length = 502

 Score = 40.0 bits (92), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V++ C  C    C EVCPV      +    I  ++CI CG C+  CP DAI     P
Sbjct: 116 YEVSDMCKGCVAHPCREVCPVGAISMKKGRSYIDQEKCIKCGKCKSVCPYDAISKKERP 174



 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 31/136 (22%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E   A                 I  D+C+ CG
Sbjct: 146 SYIDQEKCIKC--GKCKSVCPYDAISKKERPCAKACGVNAIGSDKMGRAHIDNDKCVSCG 203

Query: 45  VCEPECPVDAIKPDTE---------PGLELWLKINSEYATQW-PNITTKKESLPSAAKMD 94
           +C   CP  AI   ++          G E+  +I   +  Q+ PNIT +   + +A +  
Sbjct: 204 MCMVSCPFGAISDKSQIFQLGRALKEGGEIIAEIAPAFVGQFGPNITPR--HIKAALQEL 261

Query: 95  GVKQKYEKYFSPNPGG 110
           G  + YE     + G 
Sbjct: 262 GFAEVYEVALGADIGA 277


>gi|323968658|gb|EGB64063.1| DMSO reductase anchor subunit protein [Escherichia coli M863]
 gi|327252703|gb|EGE64357.1| dimethylsulfoxide reductase, chain B [Escherichia coli STEC_7v]
          Length = 489

 Score = 40.0 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E 
Sbjct: 61  YYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEK 120

Query: 62  G 62
           G
Sbjct: 121 G 121


>gi|225570648|ref|ZP_03779671.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
 gi|225160566|gb|EEG73185.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
          Length = 274

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP D     +    I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKDAVSMVKGRSYIDQEKCIKCGKCKSVCPYDAISRKERP 175



 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 31/127 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D     E                     I+ ++C+ CG
Sbjct: 147 SYIDQEKCIKCGK--CKSVCPYDAISRKERPCQKACGVGAIESDNCGRARINNEKCVSCG 204

Query: 45  VCEPECPVDAIKPDTE---------PGLELWLKINSEYATQWP-NITTKKESLPSAAKMD 94
           +C   CP  AI   ++          G E+  +I   +A Q+  NIT +  +L +A +  
Sbjct: 205 MCMVSCPFGAISDKSQIFQLARALTEGDEIVAEIAPAFAGQFGDNITPR--NLKAALQEL 262

Query: 95  GVKQKYE 101
           G  + YE
Sbjct: 263 GFSEVYE 269


>gi|145592563|ref|YP_001154565.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum arsenaticum DSM 13514]
 gi|145284331|gb|ABP51913.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum arsenaticum DSM 13514]
          Length = 96

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLEL 65
          E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP   I+ +    G+ +
Sbjct: 32 ERCKKCEKKPCTYMCPAKCYVQQGDYIVLSTEACVECGTCRVVCPHGNIEWNYPRSGMGI 91

Query: 66 WLKI 69
          W + 
Sbjct: 92 WYRF 95


>gi|15668371|ref|NP_247167.1| ferredoxin [Methanocaldococcus jannaschii DSM 2661]
 gi|1590944|gb|AAB98183.1| ferredoxin [Methanocaldococcus jannaschii DSM 2661]
          Length = 65

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 11 LCKHTDCVEV---CPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          LCK  +C E    CP++ F  EG+  +   PD+C  CGVCE  CP  A+K + E
Sbjct: 12 LCKGAECAECVNNCPMEVFEIEGDKVVVARPDDCTYCGVCEDVCPTGAVKVEPE 65


>gi|325661658|ref|ZP_08150282.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472185|gb|EGC75399.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I   +CI CG C+  CP DAI     P
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNGHSYIDQSKCIKCGKCKSACPYDAIAKKERP 176


>gi|190575367|ref|YP_001973212.1| ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|190013289|emb|CAQ46923.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           +  +V  +CI C  T C++ CPVD    G  ++  +  D C  C +C P CPVD I+
Sbjct: 79  VALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIE 133


>gi|254459827|ref|ZP_05073243.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676416|gb|EDZ40903.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 648

 Score = 40.0 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H+        +C++VCP          ++I P  C  CG C   CP  AI  D  P 
Sbjct: 265 LCAHSRAEQAACSNCLDVCPTGAITPAGEHVSIDPMICAGCGSCSAVCPSGAISSDAPPV 324

Query: 63  LELWLKINSEYAT 75
             ++ ++N+  +T
Sbjct: 325 DAIFSRLNTLSST 337



 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI--KPDT 59
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI  KP  
Sbjct: 495 VDTDACTLC--LSCVSLCPSGALGDNSDLPQLRFQEDACLQCGLCSNICPEKAITLKPQV 552

Query: 60  E 60
           +
Sbjct: 553 D 553


>gi|331084747|ref|ZP_08333835.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410841|gb|EGG90263.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 504

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I   +CI CG C+  CP DAI     P
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNGHSYIDQSKCIKCGKCKSACPYDAIAKKERP 176


>gi|194366700|ref|YP_002029310.1| ferredoxin [Stenotrophomonas maltophilia R551-3]
 gi|194349504|gb|ACF52627.1| electron transport complex, RnfABCDGE type, B subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           +  +V  +CI C  T C++ CPVD    G  ++  +  D C  C +C P CPVD I+
Sbjct: 79  VALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIE 133


>gi|120022|sp|P00194|FER1_RHORU RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|351273|prf||0905209A ferredoxin
          Length = 55

 Score = 40.0 bits (92), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y + E CI C    C   CPV+   +G+    ++ D CIDCG C   CPV A
Sbjct: 1  AYKIEETCISCGA--CAAECPVNAIEQGDTIFVVNADTCIDCGNCANVCPVGA 51


>gi|258515175|ref|YP_003191397.1| Electron transfer flavoprotein alpha/beta- subunit
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257778880|gb|ACV62774.1| Electron transfer flavoprotein alpha/beta- subunit
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 441

 Score = 40.0 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          MT  V+  CI C+   C+  CP    Y  +N L  +    CI+CG C   CPV AI
Sbjct: 1  MTVNVSNTCIGCQA--CISACPHGALYIDDNGLCKVIAKNCIECGGCIGVCPVGAI 54


>gi|253579276|ref|ZP_04856546.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849374|gb|EES77334.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 505

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 26/58 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++TE C  C    CVEVCP    +       I  D CI CG C   CP +AI     P
Sbjct: 114 MITEGCQGCLEHPCVEVCPKKAVHMEGGRSHIDEDACIKCGKCLEACPYNAIIKQERP 171


>gi|148239575|ref|YP_001224962.1| ferredoxin [Synechococcus sp. WH 7803]
 gi|147848114|emb|CAK23665.1| Ferredoxin [Synechococcus sp. WH 7803]
          Length = 74

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVDA 54
           DCV+ CPV C         +G +F  I  D CIDCG+C   CPVD 
Sbjct: 14 ADCVDACPVACIQPGKGKNKKGTDFYWIDFDTCIDCGICLQVCPVDG 60


>gi|295107121|emb|CBL04664.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 253

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E+C  C+   C+  CPV   Y  E   A  +  D CI CG+C   CP +    D+E G+ 
Sbjct: 150 EHCKQCEDPACMNYCPVHAIYADEKSGARKVDADRCIGCGMCSQACPWNMPVVDSETGVS 209

Query: 65  LWLKINSEYATQWPNITTK 83
                    A Q PN   K
Sbjct: 210 TKCISCGRCAEQCPNGAIK 228


>gi|154148560|ref|YP_001406021.1| formate dehydrogenase iron-sulfur subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153804569|gb|ABS51576.1| formate dehydrogenase iron-sulfur subunit [Campylobacter hominis
           ATCC BAA-381]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           Y  T  C  C    C +VCPV CFY   + + +H   +CI CG C   CP  A
Sbjct: 50  YSSTLACQHCTDAPCAQVCPVKCFYIRADGIVLHDKKKCIGCGYCLYACPFGA 102


>gi|150399566|ref|YP_001323333.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanococcus vannielii SB]
 gi|150012269|gb|ABR54721.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanococcus vannielii SB]
          Length = 85

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E C++C+  +C   CP  C  E      I  D C  C +CE ECPV AIK + E
Sbjct: 32 EKCVMCE--NCYIFCPEGCIQEKNGKFEIDYDYCKGCLICERECPVKAIKAERE 83


>gi|54309051|ref|YP_130071.1| iron-sulfur cluster-binding protein [Photobacterium profundum SS9]
 gi|46913483|emb|CAG20269.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum SS9]
          Length = 581

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKP 57
           T++C LC    CV VCP   F+   G   L +  ++CI CG+CE  CP  V  +KP
Sbjct: 446 TDDCTLC--MSCVAVCPTRAFHAVGGRPGLQLIEEDCIQCGLCEKACPEKVLTLKP 499


>gi|288802958|ref|ZP_06408394.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|302345157|ref|YP_003813510.1| ferredoxin [Prevotella melaninogenica ATCC 25845]
 gi|288334475|gb|EFC72914.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|302149382|gb|ADK95644.1| ferredoxin [Prevotella melaninogenica ATCC 25845]
          Length = 55

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C++ CPV+   EG+ +  I  D C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CIDECPVEAISEGDIY-KIDADACTECGTCASVCPSEAIS 53


>gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
 gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C H  C++VCP       ++ + +H ++CI C  C  ECP  A+K + E
Sbjct: 59  KKCIGCHH--CIDVCPSKAISLIQDHIRVHAEKCIGCRQCVLECPGKALKSEGE 110


>gi|255656166|ref|ZP_05401575.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-23m63]
 gi|296450400|ref|ZP_06892156.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP08]
 gi|296879477|ref|ZP_06903471.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP07]
 gi|296260661|gb|EFH07500.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP08]
 gi|296429623|gb|EFH15476.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP07]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C++VCP +CF + E F+ +    CI C +CE  C   A+
Sbjct: 66  CIHCDEPKCLDVCPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGAL 112


>gi|311697015|gb|ADP99888.1| protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup
           domains [marine bacterium HP15]
          Length = 637

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP- 61
           LC H        T C++VCP +  +   + + I  D C  CG C   CP  A+  +  P 
Sbjct: 258 LCAHSRANKPGCTRCLDVCPTEAIFSFGDHIQIDSDICAGCGSCAAVCPTSAVTMNETPF 317

Query: 62  -----GLELWLKINSEYATQWPNI 80
                 +E+  K+  E+  + P +
Sbjct: 318 EAITKAVEVMAKVYREHTHESPRL 341



 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 18/59 (30%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           ++ C LC    CV +CP          L  HPD          C+ CG+CE  CP  AI
Sbjct: 490 SDKCTLC--LACVSLCPTGA-------LGDHPDRPEVQFTENACVQCGICESTCPETAI 539


>gi|308051293|ref|YP_003914859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633483|gb|ADN77785.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 193

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF +  + +  H  D+CI CG C   CP  A
Sbjct: 54  ISVACMHCSDAPCMAVCPADCFEQTADGIIRHSKDKCIGCGYCLYACPFGA 104


>gi|239628141|ref|ZP_04671172.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518287|gb|EEQ58153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 483

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y+VT+NC  C    C   C       G     I P +C +CG C   CP +AI     P
Sbjct: 93  SYIVTDNCRKCMGKACQNSCNFGAISMGRERAYIDPAKCKECGKCSQACPYNAIAHLERP 152


>gi|320353396|ref|YP_004194735.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320121898|gb|ADW17444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 253

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 17/88 (19%)

Query: 9   CILCKHTDCVEVCPVDC-------FYEG--ENFLAIHPDECIDCGVCEPECPVDA----- 54
           C+ C +  CV  CPV           EG     + I+ ++CI CG C P CP DA     
Sbjct: 81  CMQCDNPPCVAACPVKGKDGATWKSTEGLSAGLVMINYEQCIGCGACVPACPYDARTMDQ 140

Query: 55  --IKPDTEPGLELWLKINS-EYATQWPN 79
             +  D  P ++ +  + S EY  +WP 
Sbjct: 141 GGMHGDGTPAIQKYETMASYEYGKKWPR 168


>gi|296449690|ref|ZP_06891460.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877993|ref|ZP_06902012.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261414|gb|EFH08239.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431061|gb|EFH16889.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 509

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 17  CVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C  VCP +   ++ EN  A IH ++C++CG C   CP  AI  K    P     ++    
Sbjct: 177 CKSVCPTNALGFDRENMKAMIHEEKCLNCGACMSACPFGAISDKSLIAPVARKLVQKEKM 236

Query: 73  YATQWPNITTKKES 86
           YA   P IT + E+
Sbjct: 237 YAVVAPAITGQVEA 250


>gi|294495829|ref|YP_003542322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666828|gb|ADE36677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 369

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 17  CVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           CVEVCP D      +N   I  D+CI CG C   CPV+AI  + E  +  ++++ +EYA
Sbjct: 202 CVEVCPCDAMEINNDNISTIDDDKCIGCGECMTVCPVEAIGFNYE-NIPDFMEMMTEYA 259


>gi|262381755|ref|ZP_06074893.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
 gi|262296932|gb|EEY84862.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15  DRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72

Query: 67  ------LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                   + + +  Q+   TT+KE + +  ++ G    ++  F+ +
Sbjct: 73  DYKCRVALMPTVFIGQFSKYTTEKEIISAVMEL-GFTHVFQVEFTAD 118


>gi|150007737|ref|YP_001302480.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|301310227|ref|ZP_07216166.1| ferredoxin 2 [Bacteroides sp. 20_3]
 gi|149936161|gb|ABR42858.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|300831801|gb|EFK62432.1| ferredoxin 2 [Bacteroides sp. 20_3]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15  DRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72

Query: 67  ------LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                   + + +  Q+   TT+KE + +  ++ G    ++  F+ +
Sbjct: 73  DYKCRVALMPTVFIGQFSKYTTEKEIISAVMEL-GFTHVFQVEFTAD 118


>gi|225405722|ref|ZP_03760911.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
 gi|225042746|gb|EEG52992.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
          Length = 484

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVT+NC  C    C   C       G +   I P +C  CG C   CP +AI     P
Sbjct: 93  AYVVTDNCQKCMGKACQNSCNFGAISMGRDRAYIDPAKCKSCGKCSQACPYNAIAHLERP 152


>gi|154498762|ref|ZP_02037140.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
          29799]
 gi|150272152|gb|EDM99356.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
          29799]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          T C++ CP +         AI    CIDCGVC   CP  AIK  ++P
Sbjct: 19 TTCIKSCPTEAIRVRNGKAAILNARCIDCGVCIQVCPHKAIKSISDP 65


>gi|2494421|sp|Q57652|FER4_METJA RecName: Full=Uncharacterized ferredoxin MJ0199
          Length = 62

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 11 LCKHTDCVEV---CPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          LCK  +C E    CP++ F  EG+  +   PD+C  CGVCE  CP  A+K + E
Sbjct: 9  LCKGAECAECVNNCPMEVFEIEGDKVVVARPDDCTYCGVCEDVCPTGAVKVEPE 62


>gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C H  C++VCP       ++ + +H ++CI C  C  ECP  A+K + E
Sbjct: 59  KKCIGCHH--CIDVCPSKAISLIQDHIRVHAEKCIGCRQCVLECPGKALKSEGE 110


>gi|126739780|ref|ZP_01755471.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719012|gb|EBA15723.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 653

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 2   TYVVTENCILCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           T  +  + +LC H+         C++ CP        + + I P  C  CG C   CP  
Sbjct: 258 TLYLKNDPVLCAHSRASQAGCSKCLDHCPTSAISPKGDHVTIDPMICAGCGACASLCPSG 317

Query: 54  AIKPDTEPGLELWLKINS 71
           AI  D  P   L+L++ +
Sbjct: 318 AITYDAPPASALFLRVQT 335



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    C  +CP     +  +   L    D C+ CG+C   CP  AIK   EP L
Sbjct: 502 TESCTLC--LSCASLCPSGALGDNPDLPQLRFQEDACLQCGICANLCPEQAIK--LEPRL 557

Query: 64  EL 65
            L
Sbjct: 558 NL 559


>gi|256840003|ref|ZP_05545512.1| ferredoxin 2 [Parabacteroides sp. D13]
 gi|256738933|gb|EEU52258.1| ferredoxin 2 [Parabacteroides sp. D13]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15  DRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72

Query: 67  ------LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                   + + +  Q+   TT+KE + +  ++ G    ++  F+ +
Sbjct: 73  DYKCRVALMPTVFIGQFSKYTTEKEIISAVMEL-GFTHVFQVEFTAD 118


>gi|255013558|ref|ZP_05285684.1| ferredoxin 2 [Bacteroides sp. 2_1_7]
          Length = 459

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C H  C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15  DRCIGCTH--CMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72

Query: 67  ------LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                   + + +  Q+   TT+KE + +  ++ G    ++  F+ +
Sbjct: 73  DYKCRVALMPTVFIGQFSKYTTEKEIISAVMEL-GFTHVFQVEFTAD 118


>gi|169334477|ref|ZP_02861670.1| hypothetical protein ANASTE_00880 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259194|gb|EDS73160.1| hypothetical protein ANASTE_00880 [Anaerofustis stercorihominis DSM
           17244]
          Length = 207

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C LC    C++VC  +   E E    I  D C++CG C   CP  A+
Sbjct: 154 YEITDDCFLCGK--CIKVCSFNAIEEAEEKYKITEDNCLECGNCYSVCPAGAV 204


>gi|83589885|ref|YP_429894.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83572799|gb|ABC19351.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 56

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M++ +TE C+ C    C + CP     EGE+   I P+ C DCG C   CP +AI
Sbjct: 1  MSHRITEECLACGV--CADECPNGAISEGEDKYEIDPELCTDCGTCMEACPNEAI 53


>gi|167991837|ref|ZP_02572936.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205329900|gb|EDZ16664.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|332989454|gb|AEF08437.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A+++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALARLNLALRRY 132


>gi|149374620|ref|ZP_01892394.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893]
 gi|149361323|gb|EDM49773.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893]
          Length = 182

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC    +GE         F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVDCISLQKGEQEDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQ 117

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 118 LTPDFEMG 125


>gi|297618232|ref|YP_003703391.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297146069|gb|ADI02826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 58

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M+YV+T+ C+ C    CV+ CPV    E E+   I P+ C +CG C   CP  A K
Sbjct: 1  MSYVITDECVACGV--CVDECPVGAITEHEDKYIIDPELCTECGSCVDACPTGAPK 54


>gi|46198462|ref|YP_004129.1| nrfC protein [Thermus thermophilus HB27]
 gi|190016225|pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
 gi|190016228|pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
 gi|190016231|pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (Uq1)
 gi|190016234|pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (Uq1)
 gi|190016237|pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 gi|190016240|pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 gi|190016243|pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
 gi|190016246|pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
 gi|46196084|gb|AAS80502.1| nrfC protein [Thermus thermophilus HB27]
          Length = 195

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           E C+ C++  CV VCP    Y+ ++ L  + P +CI CG C   CP DA
Sbjct: 56  EQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDA 104


>gi|313667518|ref|YP_004047802.1| ferredoxin [Neisseria lactamica ST-640]
 gi|313004980|emb|CBN86408.1| putative ferredoxin [Neisseria lactamica 020-06]
          Length = 279

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D       F+  +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKFMHTVIADECTGCGLCVAPCPVDCI 124


>gi|313672580|ref|YP_004050691.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939336|gb|ADR18528.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
          Length = 56

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M + +T+ C  C    C + CPV    E +    I  D C DCG C   CPVDAI+ 
Sbjct: 1  MAHFITDACTNCGA--CEDECPVGAISEADGKRVIDADTCTDCGACAEVCPVDAIEA 55


>gi|302343184|ref|YP_003807713.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Desulfarculus baarsii DSM 2075]
 gi|301639797|gb|ADK85119.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 632

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 12  CK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CK H DC+       FY   +  AI+  +CI C +C   CP +AI P  E
Sbjct: 582 CKNHRDCINTVACPAFYIAGDQPAINASQCIGCALCAQICPENAITPVKE 631


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T+ CI C  T C + CPV C  EG  +    I   +CI CG CE  CPV A+
Sbjct: 570 LSYEITDKCIGC--TKCAKNCPVSCI-EGAVKKQHVIDKSQCIKCGNCETVCPVHAV 623


>gi|168187953|ref|ZP_02622588.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|169294213|gb|EDS76346.1| conserved domain protein [Clostridium botulinum C str. Eklund]
          Length = 57

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M + + ++C+ C    C   CPV    +G++   I    CIDCG C   CPV AI  
Sbjct: 1  MAFKIGDSCVSCGS--CASECPVGAISQGDSQFDIDASACIDCGNCANVCPVGAIAA 55


>gi|167760379|ref|ZP_02432506.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
 gi|167662052|gb|EDS06182.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
          Length = 382

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV  ENCI C   +C+ VC  D     +    I  D+C+ CG C   CP DA+ P  +  
Sbjct: 205 YVEVENCIGC--GNCIRVCAHDAPKITDRKAFIDHDKCVGCGRCIGVCPKDAVCPPNDES 262

Query: 63  LELWLKINSEYA 74
            ++  K  +EY+
Sbjct: 263 NDILNKKIAEYS 274


>gi|118602190|ref|YP_903405.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567129|gb|ABL01934.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 179

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + +V    CI C  T C++VCPVD F      +  +  DEC  C +C P CPVD I
Sbjct: 110 VVFVDEAVCIGC--TLCIQVCPVDAFLGASKMMTQVIIDECTGCDLCIPVCPVDCI 163


>gi|298490238|ref|YP_003720415.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          ['Nostoc azollae' 0708]
 gi|298232156|gb|ADI63292.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein ['Nostoc
          azollae' 0708]
          Length = 75

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV  CPV C +EG        ++  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 14 ADCVSACPVACIHEGPGKNIKGTDWYWIDVATCIDCGICLQVCPVEGAILPEERPELQ 71


>gi|62181094|ref|YP_217511.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128727|gb|AAX66430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715581|gb|EFZ07152.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAIIGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A+++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALARLNLALRRY 132


>gi|312143460|ref|YP_003994906.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904111|gb|ADQ14552.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 331

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI C  + CV+ CPVD     +N   I  ++C+DCG+C  +CP   I+   E
Sbjct: 216 GCIAC--SLCVKACPVDAIEMKDNLAVIDYEKCVDCGICAEKCPTGTIEFQGE 266



 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + +NC+ C  T C + CPVD   EGE      I  + CI CG+C   C VDA+    E  
Sbjct: 273 INDNCVGC--TLCAKACPVD-AVEGEIKKLHKIDQNLCIQCGLCYEACNVDAVDLFYESD 329

Query: 63  LE 64
           L+
Sbjct: 330 LD 331


>gi|257790220|ref|YP_003180826.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830340|ref|ZP_08163797.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|257474117|gb|ACV54437.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487807|gb|EGC90245.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 215

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C++  CV VCPV   Y G++  + I  D CI C  C   CP  A   D
Sbjct: 63  CMQCENPACVSVCPVSATYRGDDGIVVIDADRCIGCKYCIAACPYGARSAD 113


>gi|16765847|ref|NP_461462.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197262713|ref|ZP_03162787.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|16421071|gb|AAL21421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240968|gb|EDY23588.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|261247723|emb|CBG25551.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994646|gb|ACY89531.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159076|emb|CBW18590.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913514|dbj|BAJ37488.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222772|gb|EFX47843.1| Putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130855|gb|ADX18285.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A+++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALARLNLALRRY 132


>gi|325294634|ref|YP_004281148.1| iron sulfur cluster binding protein (4Fe-4S ferredoxin family
          protein) [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325065082|gb|ADY73089.1| iron sulfur cluster binding protein (4Fe-4S ferredoxin family
          protein) [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 64

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++Y+    CI CK   C+EVCP+  F   GE  + ++P++C  C +C   CPVDAI
Sbjct: 4  VSYIDQGLCIGCKI--CIEVCPMGVFVMSGEKAVVMNPEKCNGCEICVENCPVDAI 57


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T+ CI C  T C + CPV C  EG  +    I   +CI CG CE  CPV A+
Sbjct: 570 LSYEITDKCIGC--TKCAKNCPVSCI-EGAVKKQHVIDKSQCIKCGNCETVCPVHAV 623


>gi|291165527|gb|EFE27577.1| ferredoxin [Filifactor alocis ATCC 35896]
 gi|320120475|gb|ADW16160.1| hypothetical protein HMPREF0389_01715 [Filifactor alocis ATCC
          35896]
          Length = 56

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV    +G+    I    CIDCG C   CPV A K +
Sbjct: 1  MAYKISDSCIGCGA--CEGECPVGAISQGDTQYIIDASACIDCGACAGVCPVGAPKAE 56


>gi|167549451|ref|ZP_02343210.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168466721|ref|ZP_02700575.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821497|ref|ZP_02833497.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|195630838|gb|EDX49430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205325401|gb|EDZ13240.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205342030|gb|EDZ28794.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087023|emb|CBY96792.1| NADH-quinone oxidoreductase subunits H/I NADH dehydrogenase I
           subunits H/I; NDH-1 subunit H/I [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAIIGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A+++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALARLNLALRRY 132


>gi|298369582|ref|ZP_06980899.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298282139|gb|EFI23627.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 284

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I
Sbjct: 72  LAWIDETACIGC--TACIRACPVDAIMGARKLMHTVIADECTGCGLCVAPCPVDCI 125


>gi|327400962|ref|YP_004341801.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316470|gb|AEA47086.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VTENCI C+   C EVC  +     E      I  + C  CG C   CPVDAI
Sbjct: 554 VTENCIGCRL--CAEVCRFNAVVIDERSGKAKIDANACAMCGACVAACPVDAI 604


>gi|323492673|ref|ZP_08097817.1| formate dehydrogenase, iron-sulfur subunit [Vibrio brasiliensis LMG
           20546]
 gi|323313048|gb|EGA66168.1| formate dehydrogenase, iron-sulfur subunit [Vibrio brasiliensis LMG
           20546]
          Length = 202

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCF   E+ + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCKAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E+CI C+   CV+ CP+D    E      I P  C+ CG C   CPVD I+
Sbjct: 580 IIAEDCIGCQQ--CVDACPIDAISGEPGEVHEIDPAACVGCGQCVDPCPVDTIE 631


>gi|224582936|ref|YP_002636734.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224467463|gb|ACN45293.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 287

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAIIGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A+++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALARLNLALRRY 132


>gi|171186440|ref|YP_001795359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoproteus neutrophilus V24Sta]
 gi|170935652|gb|ACB40913.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoproteus neutrophilus V24Sta]
          Length = 96

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLELWL 67
          C  C+   C  +CP  C+ +  + + +  + C++CG C   CP D I  D    G+ +W 
Sbjct: 34 CKRCEKKPCTYMCPAKCYVQQGDGVVLSTEACVECGTCRVVCPYDNIDWDYPRSGMGIWY 93

Query: 68 K 68
          +
Sbjct: 94 R 94


>gi|21226237|ref|NP_632159.1| ferredoxin oxidoreductase [Methanosarcina mazei Go1]
 gi|20904473|gb|AAM29831.1| Ferredoxin oxidoreductase [Methanosarcina mazei Go1]
          Length = 438

 Score = 40.0 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI CK     E CP+    +GEN    +P+ C +CG+C   C  +A + +
Sbjct: 333 CINCKVCPVAEACPMGAVSKGENGAEHNPELCFNCGLCISRCRGEAFRAN 382


>gi|288929911|ref|ZP_06423753.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
 gi|288328730|gb|EFC67319.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
          Length = 55

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C+  CPV+   EG+ +  I  D C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACGT--CLPECPVEAISEGDIY-KIDADACTECGTCASVCPSEAIS 53


>gi|218778029|ref|YP_002429347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759413|gb|ACL01879.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C E C +D     E+   ++PD CI CGVC  +CP DA+
Sbjct: 276 EKCIAC--GACAEACHMDAITV-EDAAFVNPDRCIGCGVCVSQCPSDAM 321


>gi|297620125|ref|YP_003708230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379102|gb|ADI37257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 419

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 6   TENCILCKHTDCV--EVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVDAIK 56
           TENC +     C+   +C   C  E         N   I+PD C+ CG+C  ECPVDAI 
Sbjct: 308 TENCYIINEDKCIGCRICSKACNVENAISISSETNMPYINPDYCVRCGLCHRECPVDAID 367

Query: 57  -PDTEPGLEL 65
            P+T    +L
Sbjct: 368 FPETSESEKL 377



 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 11  LCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLELWLK 68
           LC   D C  +CPV+      N   I  ++C+ C  C   CPV +AIK   E   EL  K
Sbjct: 127 LCVKCDSCRRICPVNAITYENNVYRIKSNDCVGCNRCATACPVENAIKSYNE--YELSEK 184

Query: 69  IN 70
           IN
Sbjct: 185 IN 186


>gi|113954804|ref|YP_730603.1| iron-sulfur cluster-binding protein [Synechococcus sp. CC9311]
 gi|113882155|gb|ABI47113.1| iron-sulfur cluster-binding protein [Synechococcus sp. CC9311]
          Length = 74

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           DCV+ CPV C         +G +F  I  D CIDCG+C   CPV +AI P+    L+
Sbjct: 14 ADCVDACPVACIKPGSGANKKGTDFYWIDFDTCIDCGICLQVCPVANAIVPEERADLQ 71


>gi|327484141|gb|AEA78548.1| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio cholerae
           LMA3894-4]
          Length = 202

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF    + + +H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTADGIVLHNKDLCIGCGYCLFACPFGA 103


>gi|323484215|ref|ZP_08089584.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323692097|ref|ZP_08106344.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402457|gb|EGA94786.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323503897|gb|EGB19712.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 368

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +V+T+ CI C    C   C  D     E   +I PD+C  CG C   CPVDA+    +  
Sbjct: 191 FVLTDKCIGC--GACKRNCAHDAISIAEKKASIAPDKCAGCGRCIGVCPVDAVANHCDES 248

Query: 63  LELWLKINSEYA 74
            ++  K  +EY+
Sbjct: 249 NDILNKKIAEYS 260


>gi|312959250|ref|ZP_07773768.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
 gi|311286510|gb|EFQ65073.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
          Length = 320

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 73  VAYIREAECIGC--TKCIQACPVDAIVGAAKLMHTVISDECTGCDLCVAPCPVDCI 126


>gi|147677591|ref|YP_001211806.1| ferredoxin [Pelotomaculum thermopropionicum SI]
 gi|146273688|dbj|BAF59437.1| ferredoxin [Pelotomaculum thermopropionicum SI]
          Length = 58

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + Y +++ C+ C    C+E CP D   EG+ +  I PD+C +CG C   CP  AI
Sbjct: 4  VAYKISDECLACGS--CMEACPNDAISEGDIY-KIDPDKCAECGACVDACPTGAI 55


>gi|308184080|ref|YP_003928213.1| ferrodoxin [Helicobacter pylori SJM180]
 gi|308060000|gb|ADO01896.1| ferrodoxin [Helicobacter pylori SJM180]
          Length = 83

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+   +I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYSIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD---TEPGLELWLKINS 71
          I PD    E   EL  K  S
Sbjct: 59 ILPDPNNAESKEELEYKYES 78


>gi|73667819|ref|YP_303834.1| hypothetical protein Mbar_A0270 [Methanosarcina barkeri str.
           Fusaro]
 gi|72394981|gb|AAZ69254.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 377

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T NC LCK   CV  C      E    L I+ ++CI C  C   CP DA++
Sbjct: 314 TSNCALCKA--CVSNCSAHAIEEINRTLKINEEKCIHCYCCRELCPNDAVE 362


>gi|289207331|ref|YP_003459397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288942962|gb|ADC70661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 231

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T  +  +C+ C++ DCV VCP    Y+   +  + +  D+C+ C  C   CP  A + D 
Sbjct: 65  TVNIPMSCMHCQYADCVNVCPTGASYKRPEDGIVLVDQDKCMGCNYCAWACPYGARELDR 124

Query: 60  EPGL 63
           E G+
Sbjct: 125 EDGV 128


>gi|197248415|ref|YP_002147480.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212118|gb|ACH49515.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 287

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A+++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALARLNLALRRY 132


>gi|171186294|ref|YP_001795213.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170935506|gb|ACB40767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 368

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V E C LC    CV VCP D        L + P  CI CGVC  +CP   ++
Sbjct: 252 VAEGCTLCGA--CVNVCPTDALSIKGFELRLTPALCIACGVCAEKCPERVVR 301



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C + CP   F Y     + +  D C+DCG+C   CPV+A+K  + P
Sbjct: 84  CIWCGM--CAKSCPATAFEYVERRSIRVMYDRCVDCGLCNALCPVEAVKMPSLP 135


>gi|149375891|ref|ZP_01893658.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
 gi|149359771|gb|EDM48228.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
          Length = 659

 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           LC H        T C++VCP +  +   + + I  D C  CG C   CP  AI  +  P
Sbjct: 280 LCAHSRANKPGCTRCLDVCPTEAIFSFGDHVQIDSDICAGCGSCAAVCPTSAITMNESP 338



 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 20/69 (28%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAIK 56
           ++ C LC    CV +CP          L  HPD          C+ CGVCE  CP  AI 
Sbjct: 512 SDKCTLC--LACVSLCPTGA-------LGDHPDRPEVQFTENACVQCGVCESTCPETAI- 561

Query: 57  PDTEPGLEL 65
            + +P L+L
Sbjct: 562 -NLKPQLDL 569


>gi|330835594|ref|YP_004410322.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera cuprina Ar-4]
 gi|329567733|gb|AEB95838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera cuprina Ar-4]
          Length = 87

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  CK   C++VCP   +    + + +H + C++CG     CP DAI
Sbjct: 27 CRTCKEKPCIKVCPAGTYERSGDVIEVHYERCLECGAALVACPFDAI 73


>gi|331091265|ref|ZP_08340106.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404712|gb|EGG84251.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 502

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCPV      +    I   +CI CG C+  CP DAI     P
Sbjct: 116 YEVSNMCKGCVAHPCKEVCPVGAISMKDGHSFIDQTKCIKCGKCKANCPYDAIAKKERP 174


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + Y +T+ CI C  T C   CPV C     +G++   I  ++CI CG C   CPV AIK
Sbjct: 574 VRYEITDECIGC--TKCSRACPVRCISGKIKGKHI--IDQEKCIKCGTCFEGCPVKAIK 628


>gi|261379385|ref|ZP_05983958.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
 gi|284797832|gb|EFC53179.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
          Length = 283

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 81  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVAPCPVDCI--DMVPVSQPFL 136

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                ++T          + P  A  +  + ++E++
Sbjct: 137 PSARRFST---------SAEPRFAAAEHAQSRFERH 163


>gi|118474652|ref|YP_892674.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261885445|ref|ZP_06009484.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|118413878|gb|ABK82298.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 184

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           I C+H TD  C +VCPV CFY   + + +H  ++CI CG C   CP  A
Sbjct: 54  IACQHCTDAPCAQVCPVSCFYIRADGIVLHDKNKCIGCGYCLYACPFGA 102


>gi|119983|sp|P14073|FER_BUTME RecName: Full=Ferredoxin
          Length = 55

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +T+ CI C    C + CPV+   EG +   I    C DCG C  +CPV+AI P+
Sbjct: 1  AYKITDECIACGS--CADQCPVEAISEG-SIYEIDEALCTDCGACADQCPVEAIVPE 54


>gi|218779004|ref|YP_002430322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760388|gb|ACL02854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 403

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           V  + CI C    CVE+CP++     ++   I+   CI CG+C P+C
Sbjct: 290 VDADKCIGCNQ--CVEICPMEALSLVDDKAVINHTRCIGCGLCVPKC 334


>gi|114763310|ref|ZP_01442734.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544108|gb|EAU47118.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 638

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 3   YVVTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV TE  +LC H        T C+++CP        + +++ P  C  CG C   CP  A
Sbjct: 251 YVRTEP-LLCAHSRAGQVGCTSCLDLCPTGAISPDGDHVSVDPMICAGCGACSSACPSGA 309

Query: 55  IKPDTEP 61
           I  D  P
Sbjct: 310 ISYDAPP 316



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI
Sbjct: 492 CTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAI 538


>gi|317484980|ref|ZP_07943864.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316923785|gb|EFV44987.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 622

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C HT CV+   CP     +G+  ++I P +CI C VC   CP +AI+P
Sbjct: 572 ERCVNC-HT-CVDTFGCPAFQLRDGK--VSIDPVQCIGCAVCAQVCPNNAIRP 620


>gi|308049209|ref|YP_003912775.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631399|gb|ADN75701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
           +T +C+ C +  C+ VCP   F   ++ L +   E C  CG+C   CP DAI  D   G
Sbjct: 57  LTHSCMHCGNPACLMVCPAGAFTTRDDGLVVLDRERCTSCGLCVSACPYDAIAVDPRDG 115


>gi|255527518|ref|ZP_05394386.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255508788|gb|EET85160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 195

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLEL 65
            C  C+   C + CPVD       ++ +   +CI C  C   CP+ AI   P+ + G  +
Sbjct: 59  QCRQCEDALCAKACPVDAISTKNGYVQVEEGKCIGCKTCTVACPIGAIDMIPEFKDGKRV 118

Query: 66  W---LKINSEYATQ 76
           +   +K+N E ++Q
Sbjct: 119 FQAKIKVNDENSSQ 132


>gi|220932266|ref|YP_002509174.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
 gi|219993576|gb|ACL70179.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  VCPVD     +N   I  D+CI+CG+C  +CP  AI+
Sbjct: 223 CARVCPVDAITIEDNLAVIDYDKCINCGLCAEKCPTGAIE 262


>gi|48675342|dbj|BAD22818.1| ferredoxin1 [Heliobacillus mobilis]
          Length = 55

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +++ C+ C    CV+ CPV    +G +   I+ D CIDCG C   CP  AI 
Sbjct: 1  MAYKISDACVNCGS--CVDACPVGAIEKGSDIYCIN-DTCIDCGSCVDTCPAGAIS 53


>gi|227143|prf||1615261A ferredoxin
          Length = 55

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A
Sbjct: 1  AYKILDTCVSCGA--CAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGA 51


>gi|99081333|ref|YP_613487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99037613|gb|ABF64225.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 247

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           +T+ C LC+H  CV  CP D  + G+  N L I    C  CG+C   CP
Sbjct: 185 LTDGCTLCQH--CVWSCPTDAMHLGDTGNTLEIRDQACTGCGLCASACP 231


>gi|150019920|ref|YP_001305274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermosipho melanesiensis BI429]
 gi|149792441|gb|ABR29889.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosipho melanesiensis BI429]
          Length = 97

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M ++   +CI CK   CV VCPV+     + + F  I+ + C  CG+C  +CP +AI+P+
Sbjct: 1  MPWIRESDCIKCKF--CVNVCPVEGAIIMKEDGFPYINNEICTRCGLCMEKCPKNAIRPN 58

Query: 59 TE 60
           E
Sbjct: 59 YE 60


>gi|85860769|ref|YP_462971.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85723860|gb|ABC78803.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 132

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 7   ENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C+EVCP  V    +G   ++ + D CI+CG C   CPVDA    T PG  
Sbjct: 43  EKCIGCGM--CLEVCPRTVLSLEKGRARIS-NRDACIECGACSRNCPVDAFAVGTGPGCA 99

Query: 65  LWLKINSEYATQW 77
             + INS    + 
Sbjct: 100 TAV-INSMLGRRG 111


>gi|317133838|ref|YP_004089749.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
 gi|315450300|gb|ADU23863.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
          Length = 478

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C +VCP        N +A I   +CI+CG C   CP  AI     P
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAHIDKSKCIECGRCSKVCPYSAITNRVRP 153


>gi|242239680|ref|YP_002987861.1| dimethylsulfoxide reductase, chain B [Dickeya dadantii Ech703]
 gi|242131737|gb|ACS86039.1| dimethylsulfoxide reductase, chain B [Dickeya dadantii Ech703]
          Length = 205

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    + +G+NF+ +    CI C  CE  CP  A + D 
Sbjct: 59  FAYYLSVSCNHCSDPACTKVCPTGAMHKQGDNFVVVDESICIGCRYCEMACPYGAPQFDA 118

Query: 60  EPG 62
             G
Sbjct: 119 AKG 121


>gi|83950408|ref|ZP_00959141.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83838307|gb|EAP77603.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 672

 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 3   YVVTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV TE  +LC H        T C+++CP        + + I P  C  CG C   CP  A
Sbjct: 284 YVRTEP-LLCAHSRAEQTGCTRCLDLCPTGAITPDGDHVTIDPMVCAGCGACSAACPSGA 342

Query: 55  IKPDTEP 61
           I  D  P
Sbjct: 343 ISYDAPP 349



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI    EP
Sbjct: 520 VDTDACTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANICPEDAIT--YEP 575

Query: 62  GLEL 65
            L+L
Sbjct: 576 RLDL 579


>gi|328951909|ref|YP_004369243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452233|gb|AEB08062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 181

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 23/52 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C+   CV VCP    Y  E + A+    CI C +C   CP  AI   T
Sbjct: 63  QCRQCQDAPCVRVCPTGATYRTETYTAVDQARCIGCRLCMMVCPFGAIHVAT 114


>gi|253580083|ref|ZP_04857350.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848602|gb|EES76565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 303

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +E C  CK     + CPV      +  L I P+ECI CG C+ +CP  A+ P+ + G ++
Sbjct: 180 SEKCRGCKKCQIEKSCPVHVPKLVDGKLYIDPEECIHCGRCKGKCPFGAV-PEYQNGYKI 238

Query: 66  WLKINSEYATQWPNITTKKESL 87
           ++        +W    +  ++L
Sbjct: 239 YI------GGRWGKRVSHGQAL 254


>gi|121534846|ref|ZP_01666666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306641|gb|EAX47563.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 118

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + Y +T+NC  C    C+E CP      G++   ++ D C  CG CE  CP  AI  +T+
Sbjct: 37  IRYFITKNCKKCDA--CLEHCPEGAVSAGKDGNIVN-DNCTGCGECEAVCPNGAIVRETD 93

Query: 61  PGLELWLKINSEY-ATQWP 78
           P   +  +++S +    WP
Sbjct: 94  PYRTINREMDSFFGGGAWP 112


>gi|118467237|ref|YP_884190.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
 gi|118168524|gb|ABK69421.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
          Length = 511

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          L I P  C+DCG C   CPVDAI+ + E
Sbjct: 12 LYIDPQACVDCGACVEVCPVDAIRHEDE 39


>gi|251778159|ref|ZP_04821079.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082474|gb|EES48364.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 273

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V  E CI CK   C+  CPV      E    I  + CI CG C   CP  A+  D  
Sbjct: 1   MFEVNKEKCISCKQ--CINDCPVSDILLIEGKANIKNESCIKCGHCIAICPTKAVSTDDY 58

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
              E+     SE++ +  N+    +   S  K   +K + EK       G+ T
Sbjct: 59  NMDEVKEYNKSEFSIEADNLLNFIKFRRSVRKFKDIKVEKEKISKIIEAGRFT 111


>gi|167761070|ref|ZP_02433197.1| hypothetical protein CLOSCI_03468 [Clostridium scindens ATCC 35704]
 gi|167661304|gb|EDS05434.1| hypothetical protein CLOSCI_03468 [Clostridium scindens ATCC 35704]
          Length = 159

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+   C+EVCPV   +  E + + I+PD+CI C +C   CP+  I  +TE
Sbjct: 53  CMQCEEPCCMEVCPVGAIFRDEKDAVIINPDKCIGCKMCMNACPLGNIGFNTE 105


>gi|37521054|ref|NP_924431.1| ferredoxin like protein [Gloeobacter violaceus PCC 7421]
 gi|35212050|dbj|BAC89426.1| ferredoxin like protein [Gloeobacter violaceus PCC 7421]
          Length = 75

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C         +G N+  I    CIDCG+C   CPV+ AI P+ +P L+
Sbjct: 14 ADCVDACPVSCIDQGPGKNAKGTNWYWIDFATCIDCGICLQVCPVNGAILPEEKPELQ 71


>gi|320104680|ref|YP_004180271.1| cyclic nucleotide-binding protein [Isosphaera pallida ATCC 43644]
 gi|319751962|gb|ADV63722.1| cyclic nucleotide-binding protein [Isosphaera pallida ATCC 43644]
          Length = 790

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECP 51
           ++V  +C  C    C+  CPVD        L I   D CI CG C   CP
Sbjct: 647 FLVASSCRSCLDPTCLPACPVDAINRNGKSLEIRIKDHCIGCGKCAENCP 696


>gi|282857225|ref|ZP_06266469.1| ferredoxin [Pyramidobacter piscolens W5455]
 gi|282585011|gb|EFB90335.1| ferredoxin [Pyramidobacter piscolens W5455]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T  CI C+   CV+VCP            I P  C++CG+C  +CPV AI
Sbjct: 214 VCTVGCIGCQM--CVKVCPKQTISMKGALAVIDPSNCVNCGLCAAKCPVHAI 263


>gi|21672444|ref|NP_660511.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008868|sp|Q8K9Y0|NUOI_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21623057|gb|AAM67722.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 180

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 21/91 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC      E +N      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKKNGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESL 87
               P  EL     S++  Q  N+  +KE L
Sbjct: 116 --LMPDFEL-----SDFNRQ--NLVYEKEDL 137


>gi|161870852|ref|YP_001600026.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442]
 gi|161596405|gb|ABX74065.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+ VCP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|329914674|ref|ZP_08276144.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545089|gb|EGF30386.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 547

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK------ 56
           LC H        T C++VC  D      N + + P+ C+ CG C   CP  A+       
Sbjct: 160 LCAHGRNGQIGCTSCIDVCSADAIRHDGNLVKVVPNLCVGCGACTTVCPSGALTYAYPRA 219

Query: 57  PDT 59
           PDT
Sbjct: 220 PDT 222



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T  C LC    CV  CP     +  +   L      C+ CG+CE  CP +AI
Sbjct: 412 TSACTLC--MSCVGACPESALMDNADLPQLRFVEKNCVQCGLCETTCPENAI 461


>gi|78189918|ref|YP_380256.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           chlorochromatii CaD3]
 gi|78172117|gb|ABB29213.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium chlorochromatii CaD3]
          Length = 517

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C    CV++CPV+  ++ E+  +      CI C  C   CP  A+  D E
Sbjct: 51  YFTVLRCNHCAEPPCVDICPVEALHKREDGIVDFDKRRCIGCKACAQACPYGALYIDPE 109


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C    C +VCPVD   + E    I  D+CI CG C  +CP +A++
Sbjct: 541 IIAEECRNCGL--CAKVCPVDAITKEEEAHVIDLDKCIKCGSCLDKCPFNAVQ 591


>gi|307243639|ref|ZP_07525782.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493008|gb|EFM65018.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 516

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y  T+ C  C    CVEVCP        G++F  I  D CI CG C+  CP DAI    
Sbjct: 115 VYKTTDICRGCLARPCVEVCPKKAVSMVNGKSF--IDQDLCIKCGRCKAVCPYDAIAKLE 172

Query: 60  EP 61
            P
Sbjct: 173 RP 174


>gi|218782352|ref|YP_002433670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763736|gb|ACL06202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 287

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ +CI C    CVEVCP+     GE    I    CI CG+C   CP DA++
Sbjct: 217 VSGDCIAC--GKCVEVCPMHAIVLGEEKAEIQ-GRCIGCGLCASNCPTDAME 265


>gi|78355772|ref|YP_387221.1| hydrogenase-like [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218177|gb|ABB37526.1| hydrogenase-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 483

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y  T  C  C    CV+ CP D     +    I PD+C+ CG C   CP  AI
Sbjct: 112 YEATSACRGCLAEACVQHCPKDAVRIVDGKSRIDPDKCVQCGKCMNVCPYHAI 164


>gi|13541825|ref|NP_111513.1| ferredoxin subunit of tungsten formylmethanofuran dehydrogenase
          [Thermoplasma volcanium GSS1]
 gi|14325262|dbj|BAB60166.1| ferredoxin [Thermoplasma volcanium GSS1]
          Length = 70

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          CV +CP D  +  E  + IH ++CI+CG C   CP  AI  +   G
Sbjct: 23 CVGMCPTDAIWLDETVIKIHEEKCIECGFCIVGCPTGAINAEWFHG 68


>gi|310777929|ref|YP_003966262.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
 gi|309747252|gb|ADO81914.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
          Length = 366

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V  E CI C    C ++CP    +  EN LA I  D+C  CGVC  +CP DA+
Sbjct: 312 VSKEKCIGC--GICADLCPYHAIHINENKLAVIDADKCFGCGVCVSKCPKDAM 362


>gi|149915672|ref|ZP_01904198.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810564|gb|EDM70407.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 632

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V T+ C LC    CV +CP     E  +   L    D C+ CG+C   CP DAI    EP
Sbjct: 479 VDTDACTLC--LSCVSLCPSGALLENPDKPQLRFQEDACLQCGLCANVCPEDAIT--YEP 534

Query: 62  GLEL 65
            L L
Sbjct: 535 RLNL 538



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 14/70 (20%)

Query: 3   YVVTENCILCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP--- 51
           YV  E  +LC H+        +C+++CP          + I P  C  CG C   CP   
Sbjct: 241 YVAMEP-LLCAHSRAGKVGCSNCLDICPTGAIIPAGEHVTIDPMICAGCGACAARCPSGA 299

Query: 52  --VDAIKPDT 59
              DA  PDT
Sbjct: 300 ITYDAPSPDT 309


>gi|308051285|ref|YP_003914851.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
 gi|307633475|gb|ADN77777.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C++VCPV+ F + E+ + +H  E CI CG C   CP  A
Sbjct: 53  ISVACMHCSDAPCMKVCPVNVFSKTEDGIVLHDKERCIGCGYCLYACPFGA 103


>gi|222055574|ref|YP_002537936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
 gi|221564863|gb|ACM20835.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
          Length = 95

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG----- 62
          CI C    C+EVCP   F   +    +   D C++CG C+  CP DAI+ D   G     
Sbjct: 20 CIGCGR--CLEVCPHQVFTLADKRARMADRDTCMECGACQRNCPADAIRVDAGVGCASGI 77

Query: 63 LELWLK 68
          +  WLK
Sbjct: 78 INEWLK 83


>gi|299141262|ref|ZP_07034399.1| hypothetical protein HMPREF0665_00832 [Prevotella oris C735]
 gi|298577222|gb|EFI49091.1| hypothetical protein HMPREF0665_00832 [Prevotella oris C735]
          Length = 56

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C++ CP     EG+ + +I+P+ C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CIDECPAGAISEGDIY-SINPEACTECGTCADVCPNEAIS 53


>gi|150015217|ref|YP_001307471.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
 gi|149901682|gb|ABR32515.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
          Length = 496

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C   C        +    I PD+C +CG+C+  CP DA+  D  P
Sbjct: 104 FQVTDACRNCIAHKCQSACNFGAITYVDGRAYIDPDKCKECGMCKKACPYDAVAEDMRP 162


>gi|149908810|ref|ZP_01897470.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
 gi|149808084|gb|EDM68025.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
          Length = 566

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKP---- 57
           T++C LC    CV VCP    +   G   L     +C+ CG+CE  CP  V  +KP    
Sbjct: 431 TDDCTLC--MGCVAVCPTRALHAVGGRPGLQFKEQDCVQCGLCEKACPEQVLTLKPGVNW 488

Query: 58  DTE 60
           DTE
Sbjct: 489 DTE 491


>gi|225076878|ref|ZP_03720077.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
 gi|224951764|gb|EEG32973.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 81  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMVPVSQPFL 136

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                ++T          + P  A  +  + ++E++
Sbjct: 137 PSARRFST---------SAEPRFAAAEHAQNRFERH 163


>gi|171059653|ref|YP_001792002.1| RnfABCDGE type electron transport complex subunit B [Leptothrix
           cholodnii SP-6]
 gi|170777098|gb|ACB35237.1| electron transport complex, RnfABCDGE type, B subunit [Leptothrix
           cholodnii SP-6]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD-TEPGLELW 66
           CI C  T C++ CPVDC   G   + ++   +C  C +C P CPVD I+ +   PG   W
Sbjct: 89  CIGC--TLCIKACPVDCIVGGHKRMHSVIEADCTGCELCLPACPVDCIQVEVVTPGASGW 146


>gi|82702149|ref|YP_411715.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
 gi|110287762|sp|Q2YA98|NUOI1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|82410214|gb|ABB74323.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
          Length = 171

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E E+      F  I+   CI CG CE  CP DAI+
Sbjct: 49  ERCVACYL--CAAACPVDCIALQATEDEHERRYPEFFRINFSRCIFCGFCEEACPTDAIQ 106

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 107 LTPDFEMG 114


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++T++C+ C  T C + CP D   Y      +I  ++C+ CG+C  EC  DAI+
Sbjct: 723 MITDDCVGC--TKCSKACPSDAIPYTPYEKHSIDIEKCVLCGLCIDECSFDAIR 774


>gi|282900139|ref|ZP_06308096.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
          raciborskii CS-505]
 gi|281195021|gb|EFA69961.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
          raciborskii CS-505]
          Length = 75

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C +EG        ++  I    CIDCG+C   CPV+ AI P   P L+
Sbjct: 14 ADCVDACPVACIHEGPGKNIKGTDWYWIDFTTCIDCGICLQVCPVEGAIVPQERPELQ 71


>gi|255527286|ref|ZP_05394166.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296188356|ref|ZP_06856748.1| ferredoxin [Clostridium carboxidivorans P7]
 gi|255509024|gb|EET85384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296047482|gb|EFG86924.1| ferredoxin [Clostridium carboxidivorans P7]
          Length = 56

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + ++C+ C    C   CPV+   +G++   I    CIDCG C   CPV A
Sbjct: 1  MAYKIEDSCVSCGT--CASECPVNAISQGDSIFVIDESTCIDCGNCANVCPVGA 52


>gi|219852666|ref|YP_002467098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219546925|gb|ACL17375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 368

 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + CI C+   C+ VCP       E    I  D CI C  C   CP  AI  D E  +
Sbjct: 190 VVRDLCIGCQ--TCLPVCPQQAIGMDEGAALISKDRCIGCFECMTVCPERAIDVDWETDI 247

Query: 64  ELWLKINSEYA 74
             + +   EYA
Sbjct: 248 PTFTERMVEYA 258


>gi|56750734|ref|YP_171435.1| ferredoxin-like protein [Synechococcus elongatus PCC 6301]
 gi|81299625|ref|YP_399833.1| ferredoxin-like protein [Synechococcus elongatus PCC 7942]
 gi|56685693|dbj|BAD78915.1| ferredoxin-like protein [Synechococcus elongatus PCC 6301]
 gi|81168506|gb|ABB56846.1| ferredoxin-like protein [Synechococcus elongatus PCC 7942]
          Length = 74

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 8/57 (14%)

Query: 16 DCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
          DCV+ CPV C  EG         +  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 15 DCVDACPVACIQEGPGRNQKGTTWYWIDFSTCIDCGICLQVCPVEGAILPEERPELQ 71


>gi|291561240|emb|CBL40039.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 490

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +VVT+NC  C    C   C       G +   I P  C +CG C   CP +AI     P
Sbjct: 94  FVVTDNCQKCMGKACQNACNFGAISIGRDRAHIDPSVCKECGRCAQSCPYNAIAELIRP 152


>gi|224373083|ref|YP_002607455.1| iron-sulfur cluster-binding protein CooF [Nautilia profundicola
           AmH]
 gi|223589422|gb|ACM93158.1| iron-sulfur cluster-binding protein CooF [Nautilia profundicola
           AmH]
          Length = 172

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   CV  CP+D      N++ I+ D+CI C  C   CP  AI
Sbjct: 63  CMQCEDAPCVNACPIDIIKYENNYVKIYEDDCIGCRSCAMVCPFGAI 109


>gi|218440077|ref|YP_002378406.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
 gi|218172805|gb|ACK71538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
          Length = 74

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DCV+ CPV C +       +G ++  I    CIDCG+C   CPV+ AI
Sbjct: 5  IVTETCE--GVADCVDACPVACIHPGPGKNMKGTDWYWIDFTTCIDCGICLQVCPVEGAI 62

Query: 56 KPDTEPGLE 64
           P+  P L+
Sbjct: 63 VPEERPDLQ 71


>gi|188585138|ref|YP_001916683.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349825|gb|ACB84095.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 268

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C +VCPVD      N   I   EC++CG C+ +CP D I  D E
Sbjct: 220 CAKVCPVDAITIENNLAYIDSHECVNCGKCKEKCPRDCITSDLE 263


>gi|110834471|ref|YP_693330.1| electron transport complex protein RnfB [Alcanivorax borkumensis
           SK2]
 gi|122959433|sp|Q0VP40|RNFB_ALCBS RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|110647582|emb|CAL17058.1| electron transport complex protein rnfB, putative [Alcanivorax
           borkumensis SK2]
          Length = 194

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP-D 58
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I   +
Sbjct: 108 VAYIREDECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVEPCPVDCIDMLE 165

Query: 59  TEPGLELW 66
            +P L+ W
Sbjct: 166 VKPTLQTW 173


>gi|317125936|ref|YP_004100048.1| polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
 gi|315590024|gb|ADU49321.1| Polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
          Length = 508

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV++CP    ++ ++  +    D CI C  C   CP DAI  D
Sbjct: 57  CNHCTDAPCVKICPTQALFKRDDGIVDFDGDRCIGCKSCMQACPYDAIYID 107


>gi|209694971|ref|YP_002262900.1| formate dehydrogenase iron-sulfur subunit [Aliivibrio salmonicida
           LFI1238]
 gi|208008923|emb|CAQ79139.1| formate dehydrogenase iron-sulfur subunit [Aliivibrio salmonicida
           LFI1238]
          Length = 202

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C+ VCP DCF   E+ +  H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVRHNKDLCIGCGYCLFACPFGA 103


>gi|34558205|ref|NP_908020.1| ferredoxin [Wolinella succinogenes DSM 1740]
 gi|34483924|emb|CAE10920.1| FERREDOXIN [Wolinella succinogenes]
          Length = 83

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++TE CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLMITEECIACDA--CREECPNEAIDEGDPTYMIDPDRCTECVGYYDEPSCVGACPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IIPD 62


>gi|87124438|ref|ZP_01080287.1| ferredoxin [Synechococcus sp. RS9917]
 gi|86168010|gb|EAQ69268.1| ferredoxin [Synechococcus sp. RS9917]
          Length = 74

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVDA 54
           DCV+ CPV C         +G  F  I  D CIDCG+C   CPVD 
Sbjct: 14 ADCVDACPVACIQPGRGRNKKGTEFYWIDFDTCIDCGICLQVCPVDG 60


>gi|212634958|ref|YP_002311483.1| Fe-S-cluster-containing hydrogenase components 1 [Shewanella
           piezotolerans WP3]
 gi|212556442|gb|ACJ28896.1| Fe-S-cluster-containing hydrogenase components 1 [Shewanella
           piezotolerans WP3]
          Length = 231

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  V   C  C +  CV+VCP +  Y+ E    + I  DECI C +C   CP  A + D
Sbjct: 81  TLAVPNQCNQCDNPPCVDVCPAEATYKREEDGIVVIDHDECIHCQLCVDACPYGARRKD 139


>gi|158520317|ref|YP_001528187.1| iron-sulfur cluster-binding protein [Desulfococcus oleovorans Hxd3]
 gi|158509143|gb|ABW66110.1| iron-sulfur cluster-binding protein [Desulfococcus oleovorans Hxd3]
          Length = 328

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C+ C++  C ++CP    Y+ +N  +AI PD C+    C+  CP     P+ + G+
Sbjct: 124 IPRRCMHCENPPCSKLCPFGAAYQQDNGIVAISPDICMGGAKCKAVCPWHI--PERQSGV 181

Query: 64  ELWLKINSEYA 74
            L L +  +YA
Sbjct: 182 GLHLNLMPQYA 192


>gi|282896688|ref|ZP_06304696.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphidiopsis brookii D9]
 gi|281198406|gb|EFA73294.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphidiopsis brookii D9]
          Length = 75

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DCV  CPV C +EG        ++  I    CIDCG+C   CPV+ AI
Sbjct: 5  IVTEICQ--GVADCVAACPVACIHEGPGKNIQGTDWYWIDFTTCIDCGICLQVCPVEGAI 62

Query: 56 KPDTEPGLE 64
           P   P L+
Sbjct: 63 VPQERPELQ 71


>gi|237712153|ref|ZP_04542634.1| F420H2:quinone oxidoreductase [Bacteroides sp. 9_1_42FAA]
 gi|229453474|gb|EEO59195.1| F420H2:quinone oxidoreductase [Bacteroides sp. 9_1_42FAA]
          Length = 407

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 12 CKHTDCVEVCPVDC---FYEGENFL--AIHPDECIDCGVCEPECP 51
          C  + CV+ CP  C   + + E FL   +  ++CIDCG+CE  CP
Sbjct: 11 CGCSSCVQKCPKKCISMYEDDEGFLYPVVDKEKCIDCGLCEIVCP 55


>gi|158520457|ref|YP_001528327.1| thiamine pyrophosphate binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509283|gb|ABW66250.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Desulfococcus oleovorans Hxd3]
          Length = 620

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 12  CK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CK H DC+       FY  +  + I+P+ C  C VC   CP  AI P
Sbjct: 568 CKNHRDCINTLACPAFYVADGRVQINPNLCAGCAVCVQVCPEKAIVP 614


>gi|16081628|ref|NP_393993.1| ferredoxin 2[4Fe-4S] related protin [Thermoplasma acidophilum DSM
          1728]
 gi|13124198|sp|P82853|FER2_THEAC RecName: Full=Probable ferredoxin TA0517
 gi|10639685|emb|CAC11657.1| ferredoxin 2[4Fe-4S] related protin [Thermoplasma acidophilum]
          Length = 70

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          CV +CP D  +  E  + IH ++CI+CG C   CP  AI  +   G
Sbjct: 23 CVGMCPTDAIWLDETVIKIHEEKCIECGFCIVGCPTGAITAEWFHG 68


>gi|126734228|ref|ZP_01749975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717094|gb|EBA13958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 643

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 10  ILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +LC H        T+C+++CP        + ++I P  C  CG C   CP  AI  D  P
Sbjct: 263 LLCAHSRAGQTGCTNCLDLCPTGAISPEGDHVSIDPMICAGCGACSAGCPSGAISYDAPP 322



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T++C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI
Sbjct: 491 VNTDSCTLC--LSCVSLCPSGALGDNPDKPQLRFQEDACLQCGLCVQICPEDAI 542


>gi|308051289|ref|YP_003914855.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
 gi|307633479|gb|ADN77781.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++  C+ C    C++VCPV+ F + E+ + +H  E CI CG C   CP  A
Sbjct: 53  ISVACMHCADAPCMKVCPVNVFSKTEDGIVLHDKERCIGCGYCLYACPFGA 103


>gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 533

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C VC+P CP DAIKP++E
Sbjct: 7  ENCIACDVCQPLCPQDAIKPNSE 29


>gi|109947128|ref|YP_664356.1| hypothetical protein Hac_0535 [Helicobacter acinonychis str.
          Sheeba]
 gi|109714349|emb|CAJ99357.1| fdx [Helicobacter acinonychis str. Sheeba]
          Length = 83

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYYDEPSCVSVCPVDA 58

Query: 55 IKPD---TEPGLELWLKINS 71
          I PD   TE   EL  K  S
Sbjct: 59 ILPDPNNTESIEELKYKYES 78


>gi|304413378|ref|ZP_07394851.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella
           insecticola LSR1]
 gi|304284221|gb|EFL92614.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella
           insecticola LSR1]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 61  ERCVACNL--CAAVCPVDCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTLAIQ 118

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 119 LTPDFEMG 126


>gi|260592587|ref|ZP_05858045.1| conserved domain protein [Prevotella veroralis F0319]
 gi|260535357|gb|EEX17974.1| conserved domain protein [Prevotella veroralis F0319]
          Length = 56

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C++ CPV+   EG+ +  I  D C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CIDECPVEAISEGDIY-KIDADACTECGTCASVCPNEAIS 53


>gi|255655479|ref|ZP_05400888.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451471|ref|ZP_06893208.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880180|ref|ZP_06904146.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259738|gb|EFH06596.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428769|gb|EFH14650.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 424

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E+C+ C    C+  CP+D       +G+ ++ I  D C+ CGVC   C  ++I
Sbjct: 293 ESCVKCGK--CIAACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNCHKNSI 343



 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+ + C+ CG C   CP+DAI    E G E ++KI+ +
Sbjct: 290 INHESCVKCGKCIAACPIDAISKVKEDGKE-YIKIDED 326


>gi|152991554|ref|YP_001357276.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
 gi|151423415|dbj|BAF70919.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
          Length = 346

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + +NC  C+  DCV+ CP    +  +   AI      CIDC +C   C VDA+K   +  
Sbjct: 232 IDQNCTNCR--DCVQFCPTGALFYAKEGTAIWFMSGRCIDCDICNDICKVDAVKNKEQID 289

Query: 63  LELW 66
           +  W
Sbjct: 290 IVSW 293



 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          T+C+++CP + F+     L++   +C +CGVC   CP +A+
Sbjct: 28 TECMDICPKEAFFFDRGRLSLDAQKCTNCGVCLGVCPSEAL 68


>gi|319638998|ref|ZP_07993756.1| ferredoxin [Neisseria mucosa C102]
 gi|317399902|gb|EFV80565.1| ferredoxin [Neisseria mucosa C102]
          Length = 282

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 80  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMVPVSQPFL 135

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                ++T          + P  A  +  + ++E++
Sbjct: 136 PSARRFST---------SAEPRFAAAEHAQSRFERH 162


>gi|306835751|ref|ZP_07468755.1| 4Fe-4S ferredoxin [Corynebacterium accolens ATCC 49726]
 gi|304568382|gb|EFM43943.1| 4Fe-4S ferredoxin [Corynebacterium accolens ATCC 49726]
          Length = 352

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   + G+ L
Sbjct: 125 CKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGGVSL 182


>gi|167625914|ref|YP_001676208.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355936|gb|ABZ78549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 231

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  V   C  C +  CV VCPV+  Y+   +  + I+ DECI C +C   CP  A + D
Sbjct: 81  TLAVPNQCNQCDNPACVYVCPVEATYKRKEDGIVVINHDECIHCQLCVDACPYGARRKD 139


>gi|119989|sp|P00196|FER_CLOBU RecName: Full=Ferredoxin
          Length = 55

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A
Sbjct: 1  AFVINDSCVSCGA--CAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGA 51


>gi|257790263|ref|YP_003180869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|325830362|ref|ZP_08163819.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257474160|gb|ACV54480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
 gi|325487829|gb|EGC90267.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 394

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C +VC   C    +N L I P+ CI CG C   CP  A++
Sbjct: 39 CADVCTSGCISYDDNELVIEPERCIGCGTCATVCPTCALE 78


>gi|313906031|ref|ZP_07839384.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
 gi|313469144|gb|EFR64493.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
          Length = 601

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI------ 55
           +V  + C+ CK   C+++ CP     +G++   I P++C+ CGVC+  C +DAI      
Sbjct: 526 HVEEDKCVGCK--SCMKIGCPSLSMKDGKS--VIDPNQCVGCGVCQQMCKLDAILDSDNN 581

Query: 56  -KPDTEPGLELW 66
                 PG+  W
Sbjct: 582 PHASIRPGISRW 593


>gi|298676082|ref|YP_003727832.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methanohalobium evestigatum Z-7303]
 gi|298289070|gb|ADI75036.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalobium evestigatum Z-7303]
          Length = 58

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +  +++ENC+ C    CV+ CPV+    +GEN   +   EC DCG C   CP +AI+
Sbjct: 2  VAVIISENCVGCAT--CVDECPVEAISLDGENIAVVDEGECSDCGECVDVCPTEAIE 56


>gi|300087166|ref|YP_003757688.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526899|gb|ADJ25367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 275

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIK 56
           + V++ C+ C H  CV VCPV    + EN   +  + +CI C  C+  CP D  K
Sbjct: 68  HFVSKRCMHCIHPACVSVCPVGALQKLENGRVVWEEGKCIGCRYCQNACPFDIPK 122


>gi|237736591|ref|ZP_04567072.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 642

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C  VCPV C  +G+      I  D C  CG C   CPV AI
Sbjct: 215 LKFRITEKCIGC--TACARVCPVKCI-DGKLKEKHTIDTDRCTHCGQCVAACPVGAI 268


>gi|120009|sp|P00201|FER_MEGEL RecName: Full=Ferredoxin
 gi|229468|prf||732190A ferredoxin
          Length = 54

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +V+++ C+ C    C   CP     EGE    +  D CIDCG CE  CP  AI  +
Sbjct: 2  HVISDECVKCGA--CASTCPTGAIEEGETKYVV-TDSCIDCGACEAVCPTGAISAE 54


>gi|323701313|ref|ZP_08112988.1| nitrite and sulphite reductase 4Fe-4S region [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533915|gb|EGB23779.1| nitrite and sulphite reductase 4Fe-4S region [Desulfotomaculum
           nigrificans DSM 574]
          Length = 232

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +   C +C    CV  CP DC   GE    I    C++CG C  +CP  AIK
Sbjct: 94  IGAGCTMCGL--CVAACPDDCIVLGEAGPIIDRQVCLNCGKCAAKCPTGAIK 143


>gi|126699794|ref|YP_001088691.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           630]
 gi|115251231|emb|CAJ69062.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 140

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C+ VCP +CF + E F+ +    CI C +CE  C   A+
Sbjct: 55  CIHCNEPKCLGVCPKNCFKKEEGFIVLDNQNCIGCKLCEKACEYGAL 101


>gi|193084380|gb|ACF10036.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote AD1000-18-D2]
          Length = 483

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
           C  C+ + C  +CP    +  E+ +    DE CI C  C   CP DA+  D   G
Sbjct: 71  CNHCEDSPCTTICPTTALFTREDGIVDFDDERCIGCKSCMQACPYDALYIDPNKG 125


>gi|78043167|ref|YP_360674.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995282|gb|ABB14181.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 213

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    CV+VCPV   Y+ EN  +AI  D CI C  C   CP  A   D
Sbjct: 61  CMQCDRPACVQVCPVKATYKMENGIVAIDYDRCIGCRYCVVSCPYGARSFD 111


>gi|15611332|ref|NP_222983.1| ferredoxin [Helicobacter pylori J99]
 gi|4154783|gb|AAD05841.1| Ferredoxin [Helicobacter pylori J99]
 gi|307636971|gb|ADN79421.1| 4Fe-4S ferredoxin [Helicobacter pylori 908]
 gi|317013722|gb|ADU81158.1| ferredoxin [Helicobacter pylori Gambia94/24]
 gi|325995562|gb|ADZ50967.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Helicobacter
          pylori 2018]
 gi|325997158|gb|ADZ49366.1| 4Fe-4S ferredoxin/ iron-sulfur binding protein [Helicobacter
          pylori 2017]
          Length = 84

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECPVD 53
          M+ +V + CI C    C E CP +   EG+   +I PD C +C         C   CPVD
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYSIDPDRCTECYGYDDDEPRCVSVCPVD 58

Query: 54 AIKPD 58
          AI PD
Sbjct: 59 AILPD 63


>gi|227501590|ref|ZP_03931639.1| possible formate dehydrogenase beta subunit [Corynebacterium
           accolens ATCC 49725]
 gi|227077615|gb|EEI15578.1| possible formate dehydrogenase beta subunit [Corynebacterium
           accolens ATCC 49725]
          Length = 352

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   + G+ L
Sbjct: 125 CKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGGVSL 182


>gi|254488903|ref|ZP_05102108.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
 gi|214045772|gb|EEB86410.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
          Length = 650

 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H+        +C+++CP          +AI P  C  CG C   CP  AI  D  P 
Sbjct: 268 LCAHSRAEQAACSNCLDLCPTGAITSAGEHVAIDPLICAGCGSCSAVCPSGAITYDAPPV 327

Query: 63  LELWLKINSEYAT 75
             L+ ++++  +T
Sbjct: 328 DTLFRRLSTLAST 340



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI
Sbjct: 497 VDTDACTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANICPEQAI 548


>gi|139437063|ref|ZP_01771223.1| Hypothetical protein COLAER_00198 [Collinsella aerofaciens ATCC
           25986]
 gi|133776710|gb|EBA40530.1| Hypothetical protein COLAER_00198 [Collinsella aerofaciens ATCC
           25986]
          Length = 205

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C EVCPV+      + + +   ECI C +C   CP  AI PD
Sbjct: 51  CHHCEGAPCAEVCPVNAIEHDGDRIHVKEQECIGCRLCAIACPFGAIHPD 100


>gi|150018760|ref|YP_001311014.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149905225|gb|ABR36058.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 271

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 17 CVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECP---VDAIKPDTEPGLEL 65
          C  VCP       EN  +AIHPD CI CG C   CP   +D IK      L+L
Sbjct: 17 CSNVCPSGVLSMNENGPIAIHPDNCISCGHCVAICPSSSIDNIKTPLSNQLDL 69


>gi|256810436|ref|YP_003127805.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256793636|gb|ACV24305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 82

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 11 LCKHTDCVEV---CPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          LCK  +C E    CP++ F  EG+  +   P++C  CGVCE  CP  A+K + E
Sbjct: 29 LCKGAECAECANNCPMEVFEIEGDKVVVARPEDCSYCGVCEDVCPTGAVKVEPE 82


>gi|307130319|ref|YP_003882335.1| hydrogenase 4, 4Fe-4S subunit [Dickeya dadantii 3937]
 gi|306527848|gb|ADM97778.1| hydrogenase 4, 4Fe-4S subunit [Dickeya dadantii 3937]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +LC+H +   C  VCPV+     +N + +  + CI C +C   CP  AI P 
Sbjct: 49  VLCRHCEDAPCARVCPVNAIRHQDNAVLLDENTCIGCKLCAIACPFGAITPS 100


>gi|255654945|ref|ZP_05400354.1| iron-dependent hydrogenase [Clostridium difficile QCD-23m63]
 gi|296449691|ref|ZP_06891461.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877992|ref|ZP_06902011.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261415|gb|EFH08240.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431060|gb|EFH16888.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 498

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 17  CVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C  VCP        N +   IH D CI+CG C   CP  AI  K    P  +   K  + 
Sbjct: 166 CKSVCPTGALDFNRNTMKAMIHEDNCINCGACMSACPFGAISDKSLIAPVAKKLAKKENM 225

Query: 73  YATQWPNITTKKES 86
           YA   P IT + +S
Sbjct: 226 YAIVAPAITGQIDS 239


>gi|20089624|ref|NP_615699.1| hypothetical protein MA0739 [Methanosarcina acetivorans C2A]
 gi|19914545|gb|AAM04179.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 219

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +TE C  C    C E+CP     +GE +  I    C++CG C   CP DAI+P
Sbjct: 164 YKITEKCTAC--GICKELCPSRAISKGEIY-KIDGSICLECGRCAENCPYDAIEP 215


>gi|322832975|ref|YP_004213002.1| glutamate synthase, small subunit [Rahnella sp. Y9602]
 gi|321168176|gb|ADW73875.1| glutamate synthase, small subunit [Rahnella sp. Y9602]
          Length = 659

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCP + F    + + +  + CI C  C   CP  AI
Sbjct: 55  CRQCEDAPCLQVCPTNAFVRRNDSIQLLEERCIGCKTCAVACPFGAI 101


>gi|259416891|ref|ZP_05740811.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259348330|gb|EEW60107.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 192

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP--VDAIKP 57
           ++E C LC+H  C+  CP D  + GE  + L I    C  CG+C   CP  V AI P
Sbjct: 130 ISEGCTLCQH--CIWSCPSDAIHLGEQGDTLEIRDRHCTGCGLCASACPERVLAILP 184


>gi|126698471|ref|YP_001087368.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|255100006|ref|ZP_05328983.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305893|ref|ZP_05350065.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|115249908|emb|CAJ67727.1| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 498

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 17  CVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C  VCP        N +   IH D CI+CG C   CP  AI  K    P  +   K  + 
Sbjct: 166 CKSVCPTGALDFNRNTMKAMIHEDNCINCGACMSACPFGAISDKSLIAPVAKKLAKKENM 225

Query: 73  YATQWPNITTKKES 86
           YA   P IT + +S
Sbjct: 226 YAIVAPAITGQIDS 239


>gi|325505030|dbj|BAJ83592.1| putative selenate reductase subunit B [Bacillus selenatarsenatis]
          Length = 292

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C+ C+H  C +VCP+   Y+ E+  +AI  D+CI C  C   CP  A
Sbjct: 138 CMQCEHPPCTKVCPIGATYKSEDGIVAIDYDKCIGCRYCITACPYGA 184


>gi|309379085|emb|CBX22216.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 279

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D       F+  +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRSCPADAIMGAGKFMHTVIADECTGCGLCVAPCPVDCI 124


>gi|296126619|ref|YP_003633871.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
 gi|296018435|gb|ADG71672.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
          Length = 315

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 11  LCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C H + CV+ CPV   Y  E       ++C+ C  C   CPVDAI   T   L  W ++
Sbjct: 199 ICTHCNLCVKKCPVHNIYNDEKGDIKFKNKCVMCTSCSFRCPVDAI---TIGILNGW-RV 254

Query: 70  NSEYATQWPNITTKKESLPSAAKMDGV-KQKYEKYFS 105
           N  Y  + P +  K        K D   K+ YE+YF+
Sbjct: 255 NGVYKFENPPVGIK-------TKHDNYCKKAYERYFA 284


>gi|171185525|ref|YP_001794444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934737|gb|ACB39998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 284

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL---ELWLKINSEY 73
           CV+VCP    Y    F+   P  C+ CGVC   CP         P +   E  + IN   
Sbjct: 23  CVDVCPAGALYVEGRFVKAEPSLCVGCGVCMSACPTGVFTAQLGPYISCREGGVCINGLR 82

Query: 74  ATQWPNITTKKESLPSAAKMD 94
           A  +  +  K   +   A+ D
Sbjct: 83  AEDYLRLVEKYGEVTVDARCD 103


>gi|257076190|ref|ZP_05570551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroplasma
          acidarmanus fer1]
          Length = 88

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          V TE C +C    C++VCP   + E  EN +++H + C++CG     CP  A++
Sbjct: 22 VNTEMCKICVDKPCIKVCPAGTYEEDKENGISVHYERCLECGAALYACPFGALQ 75


>gi|152979186|ref|YP_001344815.1| dimethylsulfoxide reductase chain B [Actinobacillus succinogenes
           130Z]
 gi|150840909|gb|ABR74880.1| Dimethylsulfoxide reductase chain B [Actinobacillus succinogenes
           130Z]
          Length = 205

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++ E  F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSVSCNHCDDPACVKVCPTGAMHKNEEGFVIVNEETCIGCRYCHMACPYDAPQFDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 KKG 121


>gi|223985317|ref|ZP_03635393.1| hypothetical protein HOLDEFILI_02699 [Holdemania filiformis DSM
          12042]
 gi|223962718|gb|EEF67154.1| hypothetical protein HOLDEFILI_02699 [Holdemania filiformis DSM
          12042]
          Length = 563

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE------- 60
          NC  C    CV VCP        +   I  DECI CG C   CP  A K  ++       
Sbjct: 10 NCRNCLR--CVRVCPTKAMTYQNHQPTILEDECILCGKCYAICPHSAKKVHSDGDQVRAW 67

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPS 89
             G  L L I   +A+ WP+    K  L +
Sbjct: 68 IAQGQPLALSIAPSFASVWPDYPRLKRQLKA 98


>gi|88602166|ref|YP_502344.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88187628|gb|ABD40625.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 102

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI CK   C EVCP   F  G++ +  ++   C++CG C   CPV AI+ ++  G   W
Sbjct: 16 RCINCKR--CTEVCPHGVFSAGKSHVNLVYQVRCMECGACALNCPVQAIEVESGVGCA-W 72

Query: 67 LKINS 71
            I++
Sbjct: 73 AMISA 77


>gi|188587191|ref|YP_001918736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351878|gb|ACB86148.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 275

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y   + C+ C    C+ VCP    Y  E+  + +  D CI C  C   CP + I  D   
Sbjct: 70  YFSKQGCMHCTDAGCLTVCPTGAIYRTESGTVNVDFDRCIGCNYCAANCPFNVISFDRRT 129

Query: 62  GL 63
            +
Sbjct: 130 NV 131


>gi|193084277|gb|ACF09936.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-130-D10]
          Length = 483

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
           C  C+ + C  +CP    +  E+ +    DE CI C  C   CP DA+  D   G
Sbjct: 71  CNHCEDSPCTTICPTTALFTREDGIVDFDDERCIGCKSCMQACPYDALYIDPNKG 125


>gi|119505634|ref|ZP_01627705.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
 gi|119458577|gb|EAW39681.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
          Length = 200

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I  D 
Sbjct: 113 VAYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIADECTGCDLCVEPCPVDCI--DM 168

Query: 60  EP---GLELW 66
            P   G+E W
Sbjct: 169 LPRKGGIEHW 178


>gi|126727358|ref|ZP_01743193.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703353|gb|EBA02451.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 650

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++C+ VCP          +AI P  C  CG C   CP  AI  D  P
Sbjct: 279 SNCLNVCPTGAIVSAGEHVAIDPMICAGCGACSAVCPSGAISYDAPP 325



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E+C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI
Sbjct: 500 ESCTLC--LSCVSLCPSGALADNPDMPQLRFQEDACLQCGLCSNICPENAI 548


>gi|323700521|ref|ZP_08112433.1| hypothetical protein DND132_3115 [Desulfovibrio sp. ND132]
 gi|323460453|gb|EGB16318.1| hypothetical protein DND132_3115 [Desulfovibrio desulfuricans
           ND132]
          Length = 239

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTE 60
           LC H +   CV VCPV   Y+ EN L  +  D+C+ CG C   CP DA  I P T 
Sbjct: 88  LCNHCEEPACVPVCPVHATYKDENGLVLVDSDKCLACGFCVQACPYDARYINPVTH 143


>gi|329119761|ref|ZP_08248439.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464124|gb|EGF10431.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 281

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 16/98 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI--KP 57
           + ++    CI C  T C+  CPVD        +  +   EC  CG+C   CPVD I  +P
Sbjct: 76  LAWIDEAACIGC--TACIRACPVDAIMGASKLMHTVIAAECTGCGLCVAPCPVDCIHMRP 133

Query: 58  D-----------TEPGLELWLKINSEYATQWPNITTKK 84
                         PGL       +    +W N  T+K
Sbjct: 134 SENSVLPQACSLAAPGLAPRFAAAAHARARWQNRETRK 171


>gi|315651089|ref|ZP_07904123.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315486679|gb|EFU77027.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 207

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++CI C    CVEVCP DC  +      I    C+ CG C   C V A+
Sbjct: 154 YFITDDCIGCGR--CVEVCPQDCINQENIPYVIENKHCLHCGNCLTVCSVGAV 204


>gi|313157716|gb|EFR57127.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 384

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 12 CKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C    CV+ CP  C  + E+     +  +    C+ CG+CE  CPV    P ++P
Sbjct: 11 CGCNACVQKCPQQCIGQSEDAEGFIYPQVDKARCVGCGLCEKVCPVINQNPKSKP 65


>gi|225620406|ref|YP_002721663.1| hypothetical protein BHWA1_01487 [Brachyspira hyodysenteriae WA1]
 gi|225215225|gb|ACN83959.1| hypothetical ferrotoxin domain protein [Brachyspira hyodysenteriae
           WA1]
          Length = 316

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 11  LCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C H + CV+ CPV+  Y  E       ++C+ C  C   CPVDAI       L  W ++
Sbjct: 200 ICTHCNLCVKKCPVNNIYNDEKGNIKFKNKCVMCTSCAFRCPVDAISIGI---LNFW-RV 255

Query: 70  NSEYATQWPNITTKKESLPSAAKMDGV-KQKYEKYFS 105
           N  Y  + P    K        K D   K+ Y++YF+
Sbjct: 256 NGVYKFENPPTGIK-------GKHDNYCKKAYDRYFA 285


>gi|126178175|ref|YP_001046140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125860969|gb|ABN56158.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 367

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV  E C  C    C  VCP       +    ++P+ C+ CG C   CP  AI+ D    
Sbjct: 188 YVEIERCGGCG--KCTTVCPQAAMTLADGRAVLNPEHCVGCGDCMRACPEGAIEFDWTTE 245

Query: 63  LELWLKINSEYA 74
           +  +++   EYA
Sbjct: 246 IRPFIERLCEYA 257


>gi|317489724|ref|ZP_07948227.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316911190|gb|EFV32796.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 394

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C +VC   C    +N L I P+ CI CG C   CP  A++
Sbjct: 39 CADVCTSGCISYDDNELVIEPERCIGCGTCATVCPTCALE 78


>gi|300728139|ref|ZP_07061510.1| nitroreductase family protein [Prevotella bryantii B14]
 gi|299774565|gb|EFI71186.1| nitroreductase family protein [Prevotella bryantii B14]
          Length = 269

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          T+ CI+C    C +VCP   F + E         P+ CIDCG C   CP  +I+    P
Sbjct: 8  TDTCIMCG--KCTQVCPPHIFMQREKKTPIRVFKPERCIDCGHCVDVCPTHSIEHSNIP 64


>gi|227486762|ref|ZP_03917078.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
 gi|227235232|gb|EEI85247.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
          Length = 57

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN CI C    C   CPV    +G+    I  + CIDCG C   CPV+AI
Sbjct: 1  MAYKIDENTCISCGS--CEGECPVGAISQGDAAYEIDANACIDCGSCSAVCPVEAI 54


>gi|167748877|ref|ZP_02421004.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|317470283|ref|ZP_07929677.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167651847|gb|EDR95976.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|316902256|gb|EFV24176.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 495

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V   C  C    C+EVCP +     + +  I  ++CI CG C+  CP  AI     P
Sbjct: 112 AFIVGGECQGCMAHPCMEVCPKNAISFVDGYSYIDQEKCIKCGQCQKVCPYSAIHERKRP 171



 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C +VCP    +E +                     I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKCGQ--CQKVCPYSAIHERKRPCEVACGVGAIETDYAGRATINPDKCVSCG 200

Query: 45  VCEPECPVDAIKPDTE 60
           +C   CP  AI   ++
Sbjct: 201 MCMVNCPFGAIADKSQ 216


>gi|328955718|ref|YP_004373051.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
 gi|328456042|gb|AEB07236.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
          Length = 517

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C E+CP       +    I  D CI+CG C   CP  AI     P
Sbjct: 121 YEVTNMCQGCLAHPCREICPTGAVTFVDKKAHIDKDACINCGRCASICPYTAIAHRERP 179


>gi|89092828|ref|ZP_01165780.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
 gi|89082853|gb|EAR62073.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
          Length = 555

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGL 63
           C LC    CV VCP      G    A++     C+ CG+C+  CP +AI+ +T   L
Sbjct: 424 CTLC--LSCVAVCPTQALTAGGETPALNFVEQSCVQCGLCDSACPENAIQLETRLSL 478



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T C++VCP D      + + I P  C   G C   CP  AI
Sbjct: 195 TRCLDVCPADAISSINDLVNIDPHMCHGAGGCATACPTGAI 235


>gi|89519313|gb|ABD75790.1| iron-sulfur cluster-binding protein [uncultured bacterium]
          Length = 380

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV+E CI C    C + CPV      E    I    CI C  C   CP DAI+
Sbjct: 318 VVSEKCIGCGF--CRDACPVQVISMVEKHAEIKQRHCIHCYCCHEMCPHDAIE 368


>gi|317010558|gb|ADU84305.1| ferrodoxin [Helicobacter pylori SouthAfrica7]
          Length = 83

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYSDEPSCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 7    ENCILCKHTDCVEVCPV-------DCFYEGENFLA---IHPDECIDCGVCEPECPVDAIK 56
            E CI CK   C  VCP        D   +G        I   +CI CG CE  CPVD+IK
Sbjct: 1218 ERCIACKL--CEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSIK 1275


>gi|283768793|ref|ZP_06341704.1| 4Fe-4S binding domain protein [Bulleidia extructa W1219]
 gi|283104579|gb|EFC05952.1| 4Fe-4S binding domain protein [Bulleidia extructa W1219]
          Length = 288

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
           TE CI CK   CV  CPV+ F   +N + +   P  CI C  C  +CPV A+
Sbjct: 211 TEKCIGCK--RCVAACPVNMFAYIDNTIQMVREPKHCILCAECYHQCPVKAV 260


>gi|158634530|gb|ABW76117.1| Fe-hydrogenase 2 [Trimastix pyriformis]
          Length = 292

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI   T P
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGSCQKVCPYHAIVKLTVP 174


>gi|260772822|ref|ZP_05881738.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
 gi|260611961|gb|EEX37164.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
          Length = 553

 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECP 51
           +++C LC    CV VCP    +   +  A+H  E  C+ CG+C   CP
Sbjct: 417 SQDCTLC--MSCVAVCPTRALHHSGDIPALHFTEQDCVQCGLCVTACP 462


>gi|34557118|ref|NP_906933.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Wolinella succinogenes DSM 1740]
 gi|34482833|emb|CAE09833.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Wolinella succinogenes]
          Length = 187

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +   C  C++  C EVCP +  +Y+   F+++ P +CI C  C   CP DA   D
Sbjct: 60  IPSQCQHCENAPCQEVCPTNATYYDERGFVSVDPKKCIMCTYCMTACPYDARYVD 114


>gi|218134605|ref|ZP_03463409.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989990|gb|EEC56001.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    CV+ CP  C         G    +I  + C+ CG C   CPV A+K
Sbjct: 156 YHITDACIGCG--TCVQHCPQSCISCVEDAETGNTHFSIRQEHCLHCGACYEHCPVGAVK 213


>gi|187251887|ref|YP_001876369.1| electron transfer flavoprotein subunit alpha [Elusimicrobium
          minutum Pei191]
 gi|186972047|gb|ACC99032.1| Electron transfer flavoprotein alpha subunit [Elusimicrobium
          minutum Pei191]
          Length = 397

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  NCI C  T CV +CP      +G+   A+    C  CG C PECPV  I
Sbjct: 4  IGSNCIGC--TKCVRICPFGALSMDGKK--AVVNSACTLCGACIPECPVKCI 51


>gi|11499056|ref|NP_070290.1| iron-sulfur cluster binding protein, putative [Archaeoglobus
          fulgidus DSM 4304]
 gi|2649108|gb|AAB89787.1| iron-sulfur cluster binding protein, putative [Archaeoglobus
          fulgidus DSM 4304]
          Length = 77

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            CI C    CVEVCP D F  EG   +  +P++C  C +C   CPVDAI    E  L
Sbjct: 15 SGCIGCG--TCVEVCPTDVFRLEGGRAVIKYPEDCQICHLCRLYCPVDAITISPEKSL 70


>gi|15679840|ref|NP_276958.1| indolepyruvate oxidoreductase, alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6685555|sp|O27880|IORA_METTH RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|2622988|gb|AAB86318.1| indolepyruvate oxidoreductase, alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 618

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C LC   +C+    CP     EGE F  I P +C  C VC   CP  AIKP+
Sbjct: 566 EKCDLC--LECIRDLACPAMVTREGEVF--IDPLKCRGCSVCLQICPAGAIKPE 615


>gi|330835620|ref|YP_004410348.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567759|gb|AEB95864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 405

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           I C H D   C+  CP +   + +N  + I+ ++CI CG C+  CP +A+
Sbjct: 57  ISCNHCDNPVCLSSCPANAITKDKNGIVKINSEKCIGCGYCQWACPYEAL 106


>gi|323701729|ref|ZP_08113400.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
 gi|323533265|gb|EGB23133.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
          Length = 467

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+ C  C    C   CP       +N   I    CI+CG C   CP  AI   T P
Sbjct: 93  YVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDHTVCIECGKCAKACPYHAIIEITRP 151


>gi|294634056|ref|ZP_06712612.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Streptomyces sp.
           e14]
 gi|292830052|gb|EFF88405.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Streptomyces sp.
           e14]
          Length = 327

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    E G
Sbjct: 145 MASDVCKHCTHAACLDVCPTGALFRTEFGTVVVQEDVCNGCGYCVPACPYGVIDQRKEDG 204

Query: 63  LELW 66
             +W
Sbjct: 205 -RVW 207


>gi|110680105|ref|YP_683112.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456221|gb|ABG32426.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 651

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C++VCP          +AI P  C  CG C   CP  AI  D  P
Sbjct: 280 SKCLDVCPTGAITSAGEHVAIDPLICAGCGACSALCPSGAITYDAPP 326



 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI    +P
Sbjct: 498 VDTDACTLC--LSCVSLCPSGALGDNPDNPQLRFQEDACLQCGLCSNICPEQAIT--LKP 553

Query: 62  GLEL 65
            L+L
Sbjct: 554 QLDL 557


>gi|282864084|ref|ZP_06273141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282561162|gb|EFB66707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 302

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           M ++++ + C  C H  C++VCP    +  E   + +  D C  CGVC P CP   I+
Sbjct: 109 MRWLMSSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGVCVPACPYGVIE 166


>gi|15679252|ref|NP_276369.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2622353|gb|AAB85730.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 448

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+E+CI C    C E+CPVD        + +  D CI C  C   CPVDAI   T
Sbjct: 324 VSEDCISCG--ICSELCPVDAITLRRGSIEVDTDRCILCEKCGIHCPVDAIPRTT 376



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CILC+   C   CPVD               F  I P  CI CG+C   CP DAI
Sbjct: 352 VDTDRCILCEK--CGIHCPVDAIPRTTMKKRSIKGGFTLIDPRLCIGCGLCLDVCPEDAI 409

Query: 56  KPDTEPGL 63
             D E GL
Sbjct: 410 SRD-ESGL 416


>gi|294085673|ref|YP_003552433.1| DMSO reductase subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665248|gb|ADE40349.1| DMSO reductase chain B [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+ E    + ++PD CI C +C   CP  A + D   G+
Sbjct: 79  RSCLHCEEPACVTVCPTGASYKREEDGIVLVNPDTCIGCKLCSWACPYGAREYDPSHGV 137


>gi|255101316|ref|ZP_05330293.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-63q42]
 gi|255307192|ref|ZP_05351363.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           ATCC 43255]
          Length = 140

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C+ VCP +CF + E F+ +    CI C +CE  C   A+
Sbjct: 55  CIHCNEPKCLGVCPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGAL 101


>gi|219852244|ref|YP_002466676.1| nitroreductase [Methanosphaerula palustris E1-9c]
 gi|219546503|gb|ACL16953.1| nitroreductase [Methanosphaerula palustris E1-9c]
          Length = 272

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 24/119 (20%)

Query: 2   TYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIK- 56
           T V+ E NC  C  + C  +CP     E ++  +I P+    CI CG CE  CP  A+K 
Sbjct: 3   TIVIDETNCTHC--STCATICPSGIIEETDSIPSIRPENEGSCIACGQCEATCPTGALKV 60

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
             PD +P         S      P +T      P A  +    ++  ++F P P  + T
Sbjct: 61  QDPDGQP---------SALPAGRPAMT------PGALGLYLQSRRSVRHFKPEPVPRET 104


>gi|292491704|ref|YP_003527143.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580299|gb|ADE14756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 557

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV VCP     +G     L      C+ CGVC+  CP DAI
Sbjct: 433 QTCTLC--LACVSVCPASALLDGGERPQLRFIEANCVQCGVCQAACPEDAI 481


>gi|90418565|ref|ZP_01226477.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338237|gb|EAS51888.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 576

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V T+ C LC    CV  CP       E+   L+     C+ CG+CE  CP   I    E
Sbjct: 416 HVQTDGCTLCHA--CVTACPTGALSASEDRPLLSFSHGACVQCGLCESTCPEQVIT--LE 471

Query: 61  PGLEL 65
           P L+ 
Sbjct: 472 PTLDF 476


>gi|219667285|ref|YP_002457720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537545|gb|ACL19284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           LC H D   CV  CP    Y+ +  L +H P++CI C  C   CP + I  +++     W
Sbjct: 57  LCNHCDNAACVRACPTKAMYKDDKGLTLHDPNKCIGCKSCMQACPYEVINYNSKEPHGYW 116


>gi|94311696|ref|YP_584906.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355548|gb|ABF09637.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus
           metallidurans CH34]
          Length = 726

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T  C LC    CV  CP     +      LA     C+ CG+CE  CP DAI
Sbjct: 590 VDTARCTLC--MACVGACPTQALRDNAERPVLAFVERNCVQCGLCEKTCPEDAI 641


>gi|296136307|ref|YP_003643549.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
 gi|295796429|gb|ADG31219.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 21/103 (20%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLEL 65
           CI C  T C++ CPVD      +    +  D C  C +C P CPVD I+ + +  P L  
Sbjct: 88  CIGC--TLCIQACPVDAIAGVSKRMHTVIDDWCTGCALCLPPCPVDCIRMEAQADPALAT 145

Query: 66  WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
               N+     W           S A+ D  +Q+Y ++   +P
Sbjct: 146 RSGWNA-----W-----------SPAQADEARQRYARHLERHP 172


>gi|55378119|ref|YP_135969.1| ferridoxin protein [Haloarcula marismortui ATCC 43049]
 gi|55230844|gb|AAV46263.1| putative ferridoxin protein [Haloarcula marismortui ATCC 43049]
          Length = 711

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 17  CVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
           C  +CP D     GE  LA +  +C++CG+CE  CP  AI      GL+L L   +    
Sbjct: 587 CTNLCPTDAIQRTGEGELAFNHADCVNCGLCEEGCPETAIT--MHDGLDLSLLPENRGGE 644

Query: 76  QWPNI 80
            W  +
Sbjct: 645 AWVTV 649


>gi|255324416|ref|ZP_05365533.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311740730|ref|ZP_07714557.1| 4Fe-4S ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
 gi|255298322|gb|EET77622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311304250|gb|EFQ80326.1| 4Fe-4S ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 352

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   + G+ L
Sbjct: 125 CKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGGVAL 182


>gi|167630112|ref|YP_001680611.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
 gi|167592852|gb|ABZ84600.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
          Length = 373

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C +C    C+  CPVD    GE  + I  + CI CG C   CP  AI  + +    
Sbjct: 189 VNDKCKVCGK--CLRWCPVDAISLGERAV-IAGERCIGCGECTVTCPHKAIAVNWKTDAG 245

Query: 65  LWLKINSEYATQWPNITTKKE 85
           L  +  +EYA  + ++  K+E
Sbjct: 246 LLQEKMAEYA--YASVKEKRE 264


>gi|116074820|ref|ZP_01472081.1| ferredoxin [Synechococcus sp. RS9916]
 gi|116068042|gb|EAU73795.1| ferredoxin [Synechococcus sp. RS9916]
          Length = 74

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DC++ CPV C         +G  F  I  D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCLDACPVACIQPGKGRNKKGTEFFWIDFDTCIDCGICLQVCPVEGAILAEERPDLQ 71


>gi|159900206|ref|YP_001546453.1| cyclic nucleotide-binding protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893245|gb|ABX06325.1| cyclic nucleotide-binding protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 454

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---- 59
           +T++C  C+   +CVE CP       +N      D C  C  C   CP DA++  T    
Sbjct: 335 ITQSCRQCRVGAECVEACPEAAIQWDDNGALRITDACTGCNECVLACPYDAVESQTIFLQ 394

Query: 60  ---EPGLELWLKINSEYATQWPNITTKK 84
               P  +LW ++  +     P     K
Sbjct: 395 NQQGPLWQLWQRMRQQSHQIQPKTVASK 422


>gi|83941743|ref|ZP_00954205.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83847563|gb|EAP85438.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 650

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H+        +C+++CP          +AI P  C  CG C   CP  AI  D  P 
Sbjct: 268 LCAHSRAGQAACSNCLDLCPTGAITSAGEHVAIDPMICAGCGSCSAVCPSGAITYDAPPV 327

Query: 63  LELWLKINSEYAT 75
             L+ ++++  +T
Sbjct: 328 DTLFRRLSTLAST 340



 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI
Sbjct: 497 VDTDACTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAI 548


>gi|83855221|ref|ZP_00948751.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83843064|gb|EAP82231.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 650

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H+        +C+++CP          +AI P  C  CG C   CP  AI  D  P 
Sbjct: 268 LCAHSRAGQPACSNCLDLCPTGAITSAGEHVAIDPMICAGCGSCSAVCPSGAITYDAPPV 327

Query: 63  LELWLKINSEYAT 75
             L+ ++++  +T
Sbjct: 328 DTLFRRLSTLAST 340



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI
Sbjct: 497 VDTDACTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPENAI 548


>gi|119995|sp|P07508|FER_CLOTM RecName: Full=Ferredoxin
 gi|225169|prf||1210220A ferredoxin
          Length = 55

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y +T+ CI C    C   CPV     G++   I  D CI+CG C   CPVDA
Sbjct: 1  AYFITDACISCGA--CESECPVSPISPGDSVYVIDADACIECGACANVCPVDA 51


>gi|271501139|ref|YP_003334164.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Dickeya dadantii Ech586]
 gi|270344694|gb|ACZ77459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech586]
          Length = 208

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +LC+H +   C +VCPV+     +N + +  + CI C +C   CP  AI P
Sbjct: 49 VLCRHCEDAPCAKVCPVNAITHQDNAVLLDENTCIGCKLCAIACPFGAITP 99


>gi|78222251|ref|YP_383998.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
          metallireducens GS-15]
 gi|78193506|gb|ABB31273.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
          metallireducens GS-15]
          Length = 74

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + +V++++C  C    CV+ CPV+      +   I  D CIDCG C   CP  AI 
Sbjct: 19 VAHVISDDCTNCGS--CVDSCPVNAIAPAGDKHKIDGDTCIDCGACVDTCPTSAIS 72


>gi|325958954|ref|YP_004290420.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325330386|gb|ADZ09448.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 777

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 26/119 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C LC+   C+++C     +  EN L I P  C  CG C  EC  +AI    +   +L+  
Sbjct: 588 CNLCQK--CIDICSFKAAFIQENVLKIDPIACNGCGACIAECETNAIDIIGQTDEQLFAM 645

Query: 69  INSEYATQWP------------------NITTKKESLPSAAK------MDGVKQKYEKY 103
           I+     + P                  NI   K S+PS+ +      M+ V  K+ +Y
Sbjct: 646 IDGMLINKKPDEKRIIAFLDSVGYVSADNIGINKISVPSSIRIIKVPYMNRVMYKHIRY 704


>gi|258516509|ref|YP_003192731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780214|gb|ACV64108.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 947

 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V T +C  C    C+  CP       E+ + I+P +C  CG+C  ECP++A++
Sbjct: 880 VNTGDCAAC--LTCLRTCPYSVPKIVEHKVFINPVQCRGCGICTSECPLNALE 930


>gi|257052556|ref|YP_003130389.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Halorhabdus utahensis DSM 12940]
 gi|256691319|gb|ACV11656.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Halorhabdus utahensis DSM 12940]
          Length = 97

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C   CP       EGE+F A   D C  CG+CE  CPVDAI
Sbjct: 41 AETCIACGQ--CDTFCPDQAAKPVEGEDFYAFDLDYCKGCGICEEVCPVDAI 90


>gi|227485286|ref|ZP_03915602.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236746|gb|EEI86761.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 508

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CV VCP +          I  D+CI CG C   CP +AI     P
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVSYSSKGAKIDQDKCIKCGKCVEACPYNAINHQKRP 171


>gi|171185513|ref|YP_001794432.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934725|gb|ACB39986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 279

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC+ C    C   CPV       E  + I  DECI CG C+  CP D  K
Sbjct: 94  NCMHCVEAPCARACPVGAIKVSPEGAVVIEKDECIGCGYCQMACPYDVPK 143


>gi|78043320|ref|YP_359720.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995435|gb|ABB14334.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 349

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CV VCP +  ++    +AI  +EC +CG C+  CP  AI
Sbjct: 33 CVTVCPANAIFKDGEKIAIKKEECTNCGFCKAVCPTGAI 71


>gi|332981894|ref|YP_004463335.1| electron transfer flavoprotein subunit alpha [Mahella
          australiensis 50-1 BON]
 gi|332699572|gb|AEE96513.1| Electron transfer flavoprotein alpha subunit [Mahella
          australiensis 50-1 BON]
          Length = 397

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ ENC  C    CV  CP     + EN  A+  D C  CG C   C  DAI    E G
Sbjct: 5  IIEENCTGC--AVCVRACPFGAI-KMENDKAVILDNCTLCGSCADACKFDAIDFQAERG 60


>gi|270158204|ref|ZP_06186861.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|289163539|ref|YP_003453677.1| Electron transport complex protein [Legionella longbeachae NSW150]
 gi|269990229|gb|EEZ96483.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|288856712|emb|CBJ10523.1| Electron transport complex protein [Legionella longbeachae NSW150]
          Length = 204

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++ CPVD     G+   A+   EC  CG+C   CPVD I+
Sbjct: 84  CIGC--TKCIKACPVDAIIGSGKLMHAVMTHECTGCGLCVAPCPVDCIE 130


>gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+NC  C    C   CPV     E +   +I P+ CI CG CE  C  DA+K
Sbjct: 530 YEITDNCKGCGA--CARKCPVGAISGEKKKVHSIDPNVCIKCGKCEESCKFDAVK 582


>gi|108562704|ref|YP_627020.1| ferrodoxin [Helicobacter pylori HPAG1]
 gi|207108360|ref|ZP_03242522.1| ferrodoxin [Helicobacter pylori HPKX_438_CA4C1]
 gi|107836477|gb|ABF84346.1| ferrodoxin [Helicobacter pylori HPAG1]
 gi|261839133|gb|ACX98898.1| ferrodoxin [Helicobacter pylori 52]
 gi|308063139|gb|ADO05026.1| ferrodoxin [Helicobacter pylori Sat464]
 gi|317181620|dbj|BAJ59404.1| ferredoxin [Helicobacter pylori F57]
          Length = 83

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62


>gi|332798543|ref|YP_004460042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696278|gb|AEE90735.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
          Length = 139

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C+LC +  C+  CP     + E    + ++   C  CG+CE  CP  AI+  T P +
Sbjct: 55  EQCMLCTNPRCIAACPTGALSKDEESGIIKVNKMACTGCGLCEDACPFGAIELHTFPTM 113


>gi|325270555|ref|ZP_08137155.1| ferredoxin [Prevotella multiformis DSM 16608]
 gi|324987131|gb|EGC19114.1| ferredoxin [Prevotella multiformis DSM 16608]
          Length = 55

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C++ CPV    EG+ +  I  D C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CIDECPVGAISEGDIY-KIDADACTECGTCASVCPNEAIS 53


>gi|152982452|ref|YP_001353663.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
 gi|151282529|gb|ABR90939.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M  V  ++C LC    CV  CP     +  N   L      C+ CG+CE  CP +AI
Sbjct: 560 MVMVNKDSCTLC--MSCVGACPESALTDNANMPQLRFIEKNCVQCGLCEKTCPENAI 614



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H        T C++VC  +      + + ++P+ C+ CG C   CP  A+
Sbjct: 313 LCAHGRNGKVGCTACIDVCSAEAVSHHGDQIKVNPNLCVGCGACTTVCPSGAL 365


>gi|120600350|ref|YP_964924.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560443|gb|ABM26370.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|319424953|gb|ADV53027.1| sulfur reductase, FeS subunit, PhsB [Shewanella putrefaciens 200]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHADKCVGCMYCVAACPYKVRFMNPETK 114


>gi|46203868|ref|ZP_00050860.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 153

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECP--VDAIKPDTE 60
           V+  C+ C    C  VCPV+CFY   + + +H  D CI  G C   CP    AI P  +
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGFGYCFYACPFGAHAISPRRQ 109


>gi|192358977|ref|YP_001981503.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
 gi|190685142|gb|ACE82820.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP-D 58
           + ++  + CI C  T C++ CP+D      +    I  DEC  C +C   CPVD I+   
Sbjct: 114 VAFIREDECIGC--TKCIQACPMDAILGAAKQMHTIIADECTGCDLCVEPCPVDCIEMIP 171

Query: 59  TEPGLELW 66
             PGL+ W
Sbjct: 172 VVPGLDTW 179


>gi|297619597|ref|YP_003707702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297378574|gb|ADI36729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 139

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C+   C++VCP +   +  + + +  D+CI C +C   CP+ AI+ D   G+
Sbjct: 34 RCMHCESAPCIQVCPENALKKVGDRVILDNDKCIGCSLCTEVCPIGAIRIDGATGI 89


>gi|170077855|ref|YP_001734493.1| ferredoxin-like protein [Synechococcus sp. PCC 7002]
 gi|169885524|gb|ACA99237.1| ferredoxin-like protein [Synechococcus sp. PCC 7002]
          Length = 74

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCVE CPV C ++G        ++  I  D CIDCG+C   CPV+ AI P+    L+
Sbjct: 14 ADCVEACPVACIHDGPGKNAKGTDWYWIDFDVCIDCGICIQVCPVEGAIIPEENATLQ 71


>gi|323702453|ref|ZP_08114117.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532592|gb|EGB22467.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfotomaculum nigrificans DSM 574]
          Length = 448

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          M   V+  C+ C+   C+  CP +  +  +N +  +  D+C++CG C   CPV+A+
Sbjct: 1  MAVNVSPACMGCQA--CITTCPYEALFINDNGVCEVIKDKCVECGKCVEVCPVEAL 54


>gi|291520273|emb|CBK75494.1| 4Fe-4S binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 56

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++C+ C    C   CPV    +G++   I    C++CG C   CP  AI 
Sbjct: 1  MAYVISDSCVSCGT--CEPECPVGAISQGDSQFQIDETACVECGTCAGVCPTGAIS 54


>gi|253701687|ref|YP_003022876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
 gi|251776537|gb|ACT19118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
          Length = 97

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--- 62
          E C+ C    C+EVCP   F  EG+  +    D C++CG C   CP  A+  D   G   
Sbjct: 18 ELCVGCGR--CIEVCPHQVFQLEGKRAIVADRDACMECGACALNCPAAALNVDAGVGCAS 75

Query: 63 --LELWLK 68
            +  WL+
Sbjct: 76 GLINEWLR 83


>gi|157376057|ref|YP_001474657.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318431|gb|ABV37529.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
             Y  +  C  C    CV+ CPV   ++ +    +H   D CI C  C   CP DA  P 
Sbjct: 62  FAYYTSIGCNHCSEPACVKACPVGAMHKRKQDGLVHVASDLCIGCESCARACPYDA--PQ 119

Query: 59  TEPGLELWLKINS--EYATQWPNITTKKESLPSAA----KMDGVKQKYEKYFSPN 107
            +   ++  K +   E   +  N T   ES P  A     MD +K+KY     PN
Sbjct: 120 IDKARKVMTKCDGCFERLAEGKNPTC-VESCPMRAIDFGTMDALKEKYPDAVKPN 173


>gi|90413851|ref|ZP_01221838.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
 gi|90325162|gb|EAS41665.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
          Length = 566

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKP 57
           +++C LC    CV VCP   F+   G   L +  ++CI CG+CE  CP  V  +KP
Sbjct: 431 SDDCTLC--MSCVAVCPTRAFHAVGGRPGLQLIEEDCIQCGLCEKACPEKVLTLKP 484


>gi|261403738|ref|YP_003247962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370731|gb|ACX73480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 62

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 11 LCKHTDCVEV---CPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          LCK  +C E    CP++ F  +G+  +   PD+C  CGVCE  CP  A+K + E
Sbjct: 9  LCKGAECAECANNCPMEVFEIDGDKVVVARPDDCTYCGVCEDVCPTGAVKVEPE 62


>gi|15616781|ref|NP_239993.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133970|sp|P57259|NUOI_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282723|pir||G84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain I [imported] -
           Buchnera sp. (strain APS)
 gi|10038844|dbj|BAB12879.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 180

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC    ++          F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKTDGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  --PDTE 60
             PD E
Sbjct: 116 LMPDFE 121


>gi|146291718|ref|YP_001182142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563408|gb|ABP74343.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHADKCVGCMYCVAACPYKVRFMNPETK 114


>gi|260434027|ref|ZP_05787998.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417855|gb|EEX11114.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 651

 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H+        +C+++CP        + +AI P  C  CG C   CP  AI  +  P 
Sbjct: 268 LCAHSRAGQVGCSNCLDICPTGAITPAGDHVAIDPMVCAGCGECAALCPSTAISYEDPPV 327

Query: 63  LELWLKINSEYAT 75
             L  ++ +  AT
Sbjct: 328 AALLARMQTLAAT 340



 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V TE C LC    CV +CP     +  +   L    D C+ CG+C+  CP  AI
Sbjct: 498 VDTEACTLC--LSCVSLCPSGALIDNPDLPQLNYQQDACLQCGLCKTICPESAI 549


>gi|150399059|ref|YP_001322826.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150011762|gb|ABR54214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 165

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C +VCPVD   E E  L ++ D CI C +C   CP+ A+  + E
Sbjct: 51 CRQVCPVDAIEEMEGVLIVNEDACILCRLCMIACPIGALVINNE 94


>gi|238021504|ref|ZP_04601930.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
 gi|237868484|gb|EEP69490.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
          Length = 324

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CPVD      +    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPVDAIMGASKQMHTVLADECTGCGLCVAPCPVDCI 124


>gi|163747832|ref|ZP_02155170.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161378904|gb|EDQ03335.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 654

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 3   YVVTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV TE  +LC H        T C+++CP        + + + P  C  CG C   CP  A
Sbjct: 266 YVRTEP-LLCAHSRAGQTGCTACLDLCPTGAIVPDGDHVTVDPMICAGCGACSSACPSGA 324

Query: 55  IKPDTEP 61
           I  D  P
Sbjct: 325 ISYDAPP 331



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV +CP     +  +   L    D C+ CG+CE  CP DAI
Sbjct: 507 CTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCEHICPEDAI 553


>gi|90426047|ref|YP_534417.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90108061|gb|ABD90098.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 205

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 2   TYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY +T    C  C+   C  VCPVD     +  + ++   CI C +C   CP  AI P  
Sbjct: 42  TYEITAPVQCRHCEDAPCARVCPVDAIKLTDGQVVLNEQTCIGCKMCAIACPFGAITPSG 101

Query: 60  EP 61
            P
Sbjct: 102 TP 103


>gi|302348244|ref|YP_003815882.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
 gi|302328656|gb|ADL18851.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
          Length = 601

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 17 CVEVCPV-----DCFYEGENFL----AIHPDECIDCGVCEPECPVDAI 55
          C+ VCP+     D   E +        IH D CI CG+C   CP DAI
Sbjct: 21 CISVCPINKSKKDVAIEADTKARAKPVIHEDVCIGCGLCVKACPFDAI 68


>gi|238912647|ref|ZP_04656484.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 287

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|219681536|ref|YP_002467921.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682092|ref|YP_002468476.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471217|ref|ZP_05635216.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621825|gb|ACL29981.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624379|gb|ACL30534.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085903|gb|ADP65985.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086476|gb|ADP66557.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087057|gb|ADP67137.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087614|gb|ADP67693.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 180

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC    ++          F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKTDGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  --PDTE 60
             PD E
Sbjct: 116 LMPDFE 121


>gi|114046018|ref|YP_736568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113887460|gb|ABI41511.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHSDKCVGCMYCVAACPYKVRFMNPETK 114


>gi|332289260|ref|YP_004420112.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432156|gb|AEC17215.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 205

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C++  C +VCP    ++ E+ F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYLSISCNHCENPACTKVCPTGAMHKNEDGFVIVNEEVCIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 KKG 121


>gi|300871807|ref|YP_003786680.1| ferredoxin, 4Fe-4S [Brachyspira pilosicoli 95/1000]
 gi|300689508|gb|ADK32179.1| ferredoxin, 4Fe-4S [Brachyspira pilosicoli 95/1000]
          Length = 55

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+  +C+ C    C+  C  D   EG+ +  I PD+C DCG CE  CP +AI
Sbjct: 1  MPRVINNDCVACGS--CLPECAFDAISEGDIY-KIDPDKCTDCGACEAVCPSNAI 52


>gi|325677740|ref|ZP_08157388.1| ferredoxin [Ruminococcus albus 8]
 gi|324110563|gb|EGC04731.1| ferredoxin [Ruminococcus albus 8]
          Length = 56

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y + ++CI C    C+  CPV    E +    I    C+DCG C   CPV A
Sbjct: 1  MAYKINDDCIGCGA--CMAECPVGAISEADGKCVIDASACLDCGACAGTCPVGA 52


>gi|188585512|ref|YP_001917057.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350199|gb|ACB84469.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 507

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+E CP D          I+ ++CI+CG C+  CP +AI     P
Sbjct: 110 FTVTEACRGCVAHYCMESCPKDAISFINRQAYINQEKCIECGKCKNMCPFNAISDVMRP 168


>gi|78185918|ref|YP_373961.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           luteolum DSM 273]
 gi|78165820|gb|ABB22918.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C+   CV++CPV+  ++  +  +      CI C  C   CP +++  D E
Sbjct: 51  YFTVLRCNHCEEPPCVDICPVEALHKRPDGIVDFDSRRCIGCKACAQACPYNSVYIDPE 109


>gi|326422552|gb|EGD71947.1| ABC transporter related protein [Candidatus Parvarchaeum
          acidophilus ARMAN-5_'5-way FS']
          Length = 572

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 17 CVEVCP------VDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
          C EVCP       +  Y  EN   AI    CI CG+C   CP DAIK
Sbjct: 21 CAEVCPRVREGAKETVYARENGKAAITESLCISCGICVKRCPFDAIK 67


>gi|302342956|ref|YP_003807485.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfarculus baarsii DSM 2075]
 gi|301639569|gb|ADK84891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfarculus baarsii DSM 2075]
          Length = 550

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          ++ E C  C    C++ CP       +    I  D C+ CG C   CP DAI+P
Sbjct: 17 ILPEKCTGC--VLCMKACPNQAIRVHDGKAVIRFDHCVACGACYRVCPADAIEP 68


>gi|297543698|ref|YP_003676000.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841473|gb|ADH59989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 372

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK+ +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKDKI 269


>gi|134045117|ref|YP_001096603.1| pyruvate ferredoxin oxidoreductase subunit delta [Methanococcus
          maripaludis C5]
 gi|132662742|gb|ABO34388.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanococcus
          maripaludis C5]
          Length = 85

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E C+ C++  C   CP  C  E +    I  D C  C +CE ECPV AIK + E
Sbjct: 32 EKCVKCEN--CYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKTERE 83


>gi|327309967|ref|YP_004336864.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20]
 gi|326946446|gb|AEA11552.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20]
          Length = 441

 Score = 38.9 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CV+VCP       +  +++ P +C +CG+C   CP  A+
Sbjct: 117 SECVDVCPTGALKLADRSVSVDPSKCTECGLCISSCPTGAL 157


>gi|119720028|ref|YP_920523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525148|gb|ABL78520.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 187

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y++   C  C++  CV VCP    Y + +  + I+PD CI C  C   CP      D + 
Sbjct: 56  YILLVQCQHCENAPCVAVCPTGASYIDRDGLVKINPDLCIGCKYCMTACPYGMRWLDPDF 115

Query: 62  GL 63
           GL
Sbjct: 116 GL 117


>gi|251790292|ref|YP_003005013.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Dickeya zeae Ech1591]
 gi|247538913|gb|ACT07534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          zeae Ech1591]
          Length = 208

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +LC+H +   C +VCPV+     +N + +  + CI C +C   CP  AI P
Sbjct: 49 VLCRHCEDAPCAKVCPVNTIRHQDNAVLLDENTCIGCKLCAIACPFGAITP 99


>gi|256826506|ref|YP_003150465.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582649|gb|ACU93783.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y V+ +C  C +  C  VCP    ++      ++++ D+CI CG C   CP +A K D
Sbjct: 59  FVYHVSVSCNHCDNPACTGVCPTGAMHKNPETGLVSVNTDKCIGCGYCHMACPYNAPKVD 118

Query: 59  TEPG 62
              G
Sbjct: 119 RALG 122


>gi|189345592|ref|YP_001942121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189339739|gb|ACD89142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 517

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA--IKPDT 59
           Y     C  C    CV++CPV+   +  +  +      CI C  C   CP +A  I PDT
Sbjct: 51  YFTVLRCNHCAEPPCVDICPVEALQKRPDGIVDFDSRRCIGCKACAQACPYNALYIDPDT 110


>gi|257454853|ref|ZP_05620104.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
 gi|257447786|gb|EEV22778.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E+CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I+
Sbjct: 114 EDCIGC--TKCIPACPVDAIIGSGKRMHTIFTDLCTGCELCLPPCPVDCIE 162


>gi|257792649|ref|YP_003183255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488937|ref|ZP_07947467.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831018|ref|ZP_08164342.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|257476546|gb|ACV56866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912011|gb|EFV33590.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486939|gb|EGC89385.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 253

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPGLE 64
           E+C  C    C+  CPV   Y  E   A   D  +CI CG+C   CP +  + D+E G+ 
Sbjct: 150 EHCKQCADPACMNYCPVHAIYADEESGARTVDTKKCIGCGMCSQACPWNMPRVDSETGVS 209

Query: 65  LWLKINSEYATQWPNITTK 83
                    A Q PN   K
Sbjct: 210 TKCISCGRCAEQCPNGAIK 228


>gi|188586890|ref|YP_001918435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351577|gb|ACB85847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 333

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 4  VVTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ E CI  K        C   CP +     +  + + P++C  CG+C   CP  AIKP+
Sbjct: 19 VIQERCISYKMRLMDCDKCSRKCPQNAIKVRKGKVLLSPEDCSGCGICAGACPTHAIKPE 78

Query: 59 TEPGLELWLKINSEYATQWPNITTKKE 85
                     N  Y T++  I  K++
Sbjct: 79 -----------NLNYHTKFKEIVQKEQ 94


>gi|254974516|ref|ZP_05270988.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255313641|ref|ZP_05355224.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516325|ref|ZP_05384001.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649424|ref|ZP_05396326.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|260682592|ref|YP_003213877.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686192|ref|YP_003217325.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|306519505|ref|ZP_07405852.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|260208755|emb|CBA61611.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212208|emb|CBE02900.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 498

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 17  CVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE 72
           C  VCP        N +   IH D CI+CG C   CP  AI  K    P  +   K  + 
Sbjct: 166 CKSVCPTGALDFNRNTMKAMIHEDNCINCGACISACPFGAISDKSLIAPVAKKLAKKENM 225

Query: 73  YATQWPNITTKKES 86
           YA   P IT + +S
Sbjct: 226 YAIVAPAITGQIDS 239


>gi|89897363|ref|YP_520850.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336811|dbj|BAE86406.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 193

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CVEVCPV   Y+ E+  + +   +CI CG C   CP +A
Sbjct: 63  LCNHCDNAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYCVASCPYNA 110


>gi|290559230|gb|EFD92577.1| ABC transporter related protein [Candidatus Parvarchaeum
          acidophilus ARMAN-5]
          Length = 482

 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 17 CVEVCP------VDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
          C EVCP       +  Y  EN   AI    CI CG+C   CP DAIK
Sbjct: 21 CAEVCPRVREGAKETVYARENGQAAITESLCISCGICVKRCPFDAIK 67


>gi|27904653|ref|NP_777779.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372472|sp|Q89AT9|NUOI_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|27904050|gb|AAO26884.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 180

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C    ++          F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACGL--CSVVCPVSCISLKKSTLKNNKWYPKFFRINLSRCIFCGLCEEACPTLAIQ 115

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             ++  L       SEY  Q  ++  +K+ L  + +   +   + K+     G KN
Sbjct: 116 LISDVEL-------SEYKRQ--DLVYEKDDLLISGQGKYLDYDFYKFSGVEVGTKN 162


>gi|325972119|ref|YP_004248310.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
 gi|324027357|gb|ADY14116.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
          Length = 445

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          Y+V   C  C H  C++ CP       +    I  D CI+CG C   CP +AI
Sbjct: 11 YIVESACKGCTH--CMKRCPTQAIRIAKGKARIDNDLCIECGQCMAVCPNNAI 61


>gi|317180082|dbj|BAJ57868.1| ferredoxin [Helicobacter pylori F32]
          Length = 83

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62


>gi|317177092|dbj|BAJ54881.1| ferredoxin [Helicobacter pylori F16]
          Length = 83

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62


>gi|260170367|ref|ZP_05756779.1| flavodoxin [Bacteroides sp. D2]
 gi|315918726|ref|ZP_07914966.1| flavodoxin [Bacteroides sp. D2]
 gi|313692601|gb|EFS29436.1| flavodoxin [Bacteroides sp. D2]
          Length = 267

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    C++ CP++ F   +N    L +    CI CG CE ECP DA+
Sbjct: 188 TSRCIACGK--CMKSCPMNVFTLKDNAKTPLPVDEMNCIMCGKCEKECPADAV 238


>gi|33240385|ref|NP_875327.1| ferredoxin [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237912|gb|AAP99979.1| Ferredoxin [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 73

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYE-------GENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
          ++CV+ CPVDC  +       G  +  I    CIDCGVC   CP+ +A+  +  P L+
Sbjct: 14 SECVKACPVDCIKQASGTNKKGTTYYFIDFSTCIDCGVCLSVCPIKNAVVSEERPDLQ 71


>gi|330828774|ref|YP_004391726.1| iron-sulfur cluster-binding protein [Aeromonas veronii B565]
 gi|328803910|gb|AEB49109.1| Iron-sulfur cluster-binding protein [Aeromonas veronii B565]
          Length = 588

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 12/61 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAI--KPDTE 60
           +C LC    CV VCP    +      G NF+     +CI CG+CE  CP  AI   P  +
Sbjct: 455 DCTLC--MGCVAVCPSRALHAVGHAPGLNFIE---QDCIQCGMCEKACPEQAIVLTPRLQ 509

Query: 61  P 61
           P
Sbjct: 510 P 510



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLELWLKINSEY 73
           C++VCP D        + I P  C   G C   CP  AI   +PD     +  L++   Y
Sbjct: 233 CLDVCPTDALKPINGRIQIDPHLCQGFGSCASACPTGAIGYHQPDANTSGDYLLRLLKHY 292


>gi|332654222|ref|ZP_08419966.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
 gi|332517308|gb|EGJ46913.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
          Length = 505

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C    C+EVCP D     +G++F  I   +CI CG C   CP  AI     P 
Sbjct: 116 VTNMCQGCLAHPCMEVCPKDAISLVQGKSF--IDQTKCIKCGKCADACPYGAILKLERPC 173

Query: 63  LE 64
            E
Sbjct: 174 AE 175


>gi|124027636|ref|YP_001012956.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
 gi|123978330|gb|ABM80611.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
          Length = 494

 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  V  E C LC    C + CP          EG   L +H D CI CG C   CP DAI
Sbjct: 341 LVIVDQERCTLCGA--CAKECPTGALKLREEAEGSALLFLH-DRCIACGWCREVCPEDAI 397


>gi|291563047|emb|CBL41863.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 513

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP D            I PD+CI CG C   C   AI     P
Sbjct: 123 VTDGCQGCLAHPCVEVCPKDAVSLDRTNGRSRIDPDKCIKCGQCANVCAYHAIIIQERP 181



 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V   + I+ +   C   C +D  +  EN  A I+ D+C+ CG C   CP  AI   ++
Sbjct: 169 VCAYHAIIIQERPCAAACGMDAIHSDENGKADINYDKCVSCGQCLVNCPFGAIADKSQ 226


>gi|85704196|ref|ZP_01035299.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85671516|gb|EAQ26374.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 653

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V T+ C LC    CV +CP     + E+   L    D C+ CG+C   CP  AI    EP
Sbjct: 500 VNTDACTLC--LSCVSLCPSGALMDNEDKPQLRFQEDACLQCGICATICPEKAIT--LEP 555

Query: 62  GLEL 65
            + L
Sbjct: 556 RMNL 559



 Score = 37.7 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 3   YVVTENCILCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV  E  ++C H+         C+++CP        + ++I P  C  CG C   CP  A
Sbjct: 261 YVALEP-LICAHSRAEQTGCSKCLDICPTGAITPDGDHVSIDPMICAGCGACAARCPSGA 319

Query: 55  IKPDTEP 61
           I  D  P
Sbjct: 320 ITYDAPP 326


>gi|204929685|ref|ZP_03220759.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321404|gb|EDZ06604.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613728|gb|EFY10667.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619529|gb|EFY16405.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625034|gb|EFY21863.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629523|gb|EFY26299.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634046|gb|EFY30783.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635516|gb|EFY32227.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639808|gb|EFY36487.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644430|gb|EFY40971.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648575|gb|EFY45024.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655205|gb|EFY51514.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658252|gb|EFY54518.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664253|gb|EFY60450.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669420|gb|EFY65569.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673147|gb|EFY69253.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676539|gb|EFY72607.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683289|gb|EFY79303.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685825|gb|EFY81818.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194768|gb|EFZ79956.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199544|gb|EFZ84635.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204681|gb|EFZ89679.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208129|gb|EFZ93074.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210147|gb|EFZ95048.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217015|gb|EGA01737.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221813|gb|EGA06217.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225008|gb|EGA09263.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229297|gb|EGA13421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235388|gb|EGA19472.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237426|gb|EGA21489.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245180|gb|EGA29181.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248883|gb|EGA32809.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253170|gb|EGA37002.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255404|gb|EGA39172.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262037|gb|EGA45602.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266348|gb|EGA49836.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269821|gb|EGA53271.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|158634528|gb|ABW76116.1| Fe-hydrogenase 1 [Trimastix pyriformis]
          Length = 439

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPYHAI 168


>gi|147918998|ref|YP_687275.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110622671|emb|CAJ37949.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 370

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C+ C    C  VCP    +  ++   +  + CI CG C   CPV +I  + E  +  +
Sbjct: 194 KGCVGCGR--CAAVCPRIAVHMEQDIAVVDDEVCIGCGECMTVCPVGSISFNWEKDIVPF 251

Query: 67  LKINSEYA 74
           +++ +EYA
Sbjct: 252 MEMMTEYA 259


>gi|18313615|ref|NP_560282.1| polyferredoxin [Pyrobaculum aerophilum str. IM2]
 gi|18161161|gb|AAL64464.1| polyferredoxin [Pyrobaculum aerophilum str. IM2]
          Length = 370

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C + CP     Y     + +  + CIDCG+C   CPVDA+K  + P
Sbjct: 87  CIWCGL--CADYCPASAIEYVERKNVKVKYESCIDCGLCNSVCPVDAVKMPSLP 138



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           + E C LC    CV  CP D        L + P  CI CGVC  +CP
Sbjct: 255 IREGCTLCGA--CVNACPTDALSVRGYELRLVPALCIACGVCVAKCP 299


>gi|288930542|ref|YP_003434602.1| methyl-viologen-reducing hydrogenase subunit delta [Ferroglobus
           placidus DSM 10642]
 gi|288892790|gb|ADC64327.1| methyl-viologen-reducing hydrogenase delta subunit [Ferroglobus
           placidus DSM 10642]
          Length = 777

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV  E CI C+   C EVC  +          I P+ C+ CGVC   CP DAI
Sbjct: 569 AYVNEEKCIGCRI--CEEVCNFNAVTFENKKAKIDPNACVMCGVCAASCPADAI 620


>gi|238752180|ref|ZP_04613661.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
 gi|238709551|gb|EEQ01788.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  ENCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|159027686|emb|CAO89551.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV  CPV C +       +G ++  I    CIDCG+C   CPV+ AI P+  P L+
Sbjct: 14 ADCVSACPVACIHPGLGKNVKGTDWYWIDFATCIDCGICLQVCPVEGAILPEERPDLQ 71


>gi|160943469|ref|ZP_02090702.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445148|gb|EDP22151.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103736|emb|CBL01280.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Faecalibacterium prausnitzii SL3/3]
          Length = 56

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCGA--CEGACPVGAITIENGAAVVNADSCIDCGACEGACPTGAIAAE 56


>gi|152988215|ref|YP_001347022.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PA7]
 gi|150963373|gb|ABR85398.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PA7]
          Length = 776

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 12/55 (21%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECPVD 53
           CI C   DC +VCP         F+    E E  LA H  +CI+CG C   CP D
Sbjct: 369 CIRCG--DCAQVCPASLLPQQLHFFALGGEHEQLLAHHLFDCIECGACAYICPSD 421


>gi|194445567|ref|YP_002041785.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404230|gb|ACF64452.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 26/107 (24%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----------KPDTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDAI          + DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKSVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES--LPSAAKMDGVKQKY 100
                  L LW   +S+Y  ++ +I  ++ +  L + A ++   ++Y
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMALAGLNLALRRY 132


>gi|119511224|ref|ZP_01630340.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
          CCY9414]
 gi|119464102|gb|EAW45023.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
          CCY9414]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYE-------GENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           DCV+ CPV C +E       G ++  I    CIDCG+C   CPV DAI P+    L+
Sbjct: 14 ADCVDACPVACIHEGPGKNVKGTDWYWIDFATCIDCGICIEVCPVADAIVPEERSDLQ 71


>gi|194476648|ref|YP_002048827.1| ferredoxin [Paulinella chromatophora]
 gi|171191655|gb|ACB42617.1| ferredoxin [Paulinella chromatophora]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           DCV  CPV C +       +G NF  I  + CIDCG+C   CP+ +AI  +    L+
Sbjct: 14 ADCVNACPVACIHMGNGINKKGTNFYWIDFNTCIDCGICLQVCPLENAILAEERSELQ 71


>gi|200388028|ref|ZP_03214640.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605126|gb|EDZ03671.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|150402670|ref|YP_001329964.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033700|gb|ABR65813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 138

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--------- 58
            C+ C+   C+  CP D   + ++ + I P++CI C +C   CPV AI+ D         
Sbjct: 34  RCMHCEDAPCLNACPEDAIKKIDDKVIIEPEKCIGCALCAEVCPVGAIQIDKCTKVAVKC 93

Query: 59  ---TEPGLELWLKINSEYATQW--PNITTKKESLPSAAK 92
               E G E+ L++    A  +    I  K+  L S  K
Sbjct: 94  DGCIERGSEICLEVCPTKALDYYENTIENKRAELVSKLK 132


>gi|300690753|ref|YP_003751748.1| 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
 gi|299077813|emb|CBJ50451.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
          Length = 708

 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV  CP     +      L++    C+ CG+CE  CP DAI
Sbjct: 578 ERCTLC--MACVSACPSQALRDQAERPVLSMIERNCVQCGLCETTCPEDAI 626


>gi|238919983|ref|YP_002933498.1| hypothetical protein NT01EI_2087 [Edwardsiella ictaluri 93-146]
 gi|259646560|sp|C5BDE6|RNFB_EDWI9 RecName: Full=Electron transport complex protein rnfB
 gi|238869552|gb|ACR69263.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 191

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        L  +  D+C  CG+C P CP   I+
Sbjct: 115 NCIGC--TKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQ 162


>gi|238762649|ref|ZP_04623619.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
 gi|238699294|gb|EEP92041.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
          Length = 207

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  ENCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|168243307|ref|ZP_02668239.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449267|ref|YP_002046585.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|198245772|ref|YP_002216591.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205353626|ref|YP_002227427.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857935|ref|YP_002244586.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|194407571|gb|ACF67790.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197940288|gb|ACH77621.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205273407|emb|CAR38382.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205337655|gb|EDZ24419.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|206709738|emb|CAR34090.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326624347|gb|EGE30692.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628726|gb|EGE35069.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|163784935|ref|ZP_02179692.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Hydrogenivirga
          sp. 128-5-R1-1]
 gi|159879794|gb|EDP73541.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Hydrogenivirga
          sp. 128-5-R1-1]
          Length = 338

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 17 CVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
          C++VCP+ D  Y   + + I+ D+CI CG C   CP +A   +     +L+ K+  E   
Sbjct: 24 CIDVCPIEDTLYIENDKIQINEDKCISCGACVGVCPTEAFSLNGFNPSDLYKKMVEENQ- 82

Query: 76 QWPNITTKKESLPSAAKMDG 95
             N+ + K ++P A+  D 
Sbjct: 83 ---NLISCKLNVPCASSFDS 99


>gi|150401392|ref|YP_001325158.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014095|gb|ABR56546.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 63

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 16 DCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +C + CP++ F  +GE  +  H DEC  CGVCE  CP  A+K
Sbjct: 19 ECEKNCPMEVFEVDGEKVVVAHEDECTGCGVCEDVCPTGAVK 60


>gi|24375548|ref|NP_719591.1| polysulfide reductase, subunit B [Shewanella oneidensis MR-1]
 gi|24350427|gb|AAN57035.1|AE015837_7 polysulfide reductase, subunit B [Shewanella oneidensis MR-1]
          Length = 188

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPETK 114


>gi|253572693|ref|ZP_04850094.1| quinone oxidoreductase [Bacteroides sp. 1_1_6]
 gi|251837825|gb|EES65915.1| quinone oxidoreductase [Bacteroides sp. 1_1_6]
          Length = 389

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDC---FYEGENFL--AIHPDECIDCGVCEPECPV 52
          E+C  C  + CV++CP  C   + + E FL   I+ D C++C +CE  CPV
Sbjct: 8  EDC--CGCSACVQICPKCCISMYEDNEGFLYPEINKDICVNCHLCENVCPV 56


>gi|167770334|ref|ZP_02442387.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
 gi|167667656|gb|EDS11786.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
          Length = 513

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C EVCP D          I  ++CI CG C   CP  AI
Sbjct: 124 YRVTDCCQGCLAHPCKEVCPRDAVSIVHGKSVIDQEKCIKCGRCAEVCPYGAI 176


>gi|325971008|ref|YP_004247199.1| hypothetical protein SpiBuddy_1180 [Spirochaeta sp. Buddy]
 gi|324026246|gb|ADY13005.1| protein of unknown function DUF362 [Spirochaeta sp. Buddy]
          Length = 372

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C+   C+++CP +        + I P  CI C  C   CP  AI  D
Sbjct: 320 CIQCR--KCIDICPANALTMEHKRIIIDPSVCIRCYCCHEVCPASAIAVD 367


>gi|323669543|gb|ABI30020.2| CarE [Acetobacterium woodii]
          Length = 396

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V+ E CI C  + C + CP D     EN +A+  D C +CG C   CP +AI    + G 
Sbjct: 5  VIEEKCIGC--SKCQKSCPFDAITI-ENKIAVIGDACTNCGTCIDVCPTEAI---LQEGT 58

Query: 64 ELWLKINSEYATQW 77
          E  ++  S Y   W
Sbjct: 59 EKIVRDLSMYKGVW 72


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E+C+ C    C   CPV     E     ++ P  CI CG C   CP  A+ P  + G
Sbjct: 561 VTPESCVGCGA--CKRACPVGAISGETRQAHSVDPTACIGCGACLDTCPFGALSPAPKEG 618


>gi|307721539|ref|YP_003892679.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Sulfurimonas autotrophica DSM 16294]
 gi|306979632|gb|ADN09667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sulfurimonas autotrophica DSM 16294]
          Length = 366

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CVEVCPV+  +   + ++  P EC+ CG C+  CP  A   D
Sbjct: 24 CVEVCPVETIHLENSTISFTPSECVGCGGCDAVCPTAAYTLD 65


>gi|302387337|ref|YP_003823159.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
          saccharolyticum WM1]
 gi|302197965|gb|ADL05536.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
          saccharolyticum WM1]
          Length = 393

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V+ E C  C  + CV+ CP D     EN LA+    C  CGVC  +CP DAI+   E   
Sbjct: 5  VIKEKCRGC--SICVKNCPFDAITM-ENKLAVIGTACTGCGVCVEKCPFDAIEKTEEEKE 61

Query: 64 ELWLKINSEYATQWPNITTKKESLPSAAK 92
           + L   SEY   W     ++ +L    K
Sbjct: 62 TVDL---SEYRDVWVFAEQREGALMPVVK 87


>gi|296387990|ref|ZP_06877465.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAb1]
          Length = 188

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+   
Sbjct: 105 VAYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMRA 162

Query: 60  EP 61
            P
Sbjct: 163 TP 164


>gi|117922054|ref|YP_871246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614386|gb|ABK49840.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 188

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPETK 114


>gi|311108198|ref|YP_003981051.1| benzoyl-CoA oxygenase/reductase BoxA [Achromobacter xylosoxidans
          A8]
 gi|310762887|gb|ADP18336.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Achromobacter
          xylosoxidans A8]
          Length = 412

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+       N   + P+ C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEETCPIKAITHDSNNYVVDPEICNGCMACVPPCPTGAI 64


>gi|285019250|ref|YP_003376961.1| ferredoxin protein [Xanthomonas albilineans GPE PC73]
 gi|283474468|emb|CBA16969.1| putative ferredoxin protein [Xanthomonas albilineans]
          Length = 136

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  V+  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I
Sbjct: 80  VALVIEADCIGC--TKCIQACPVDAIVGGAKHMHTVLAPLCTGCALCLPACPVDCI 133


>gi|256824301|ref|YP_003148261.1| formate dehydrogenase subunit beta [Kytococcus sedentarius DSM
           20547]
 gi|256687694|gb|ACV05496.1| formate dehydrogenase beta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 391

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+  T+
Sbjct: 196 SDVCKHCTHAGCLDVCPTGALFRSEFGTVVVQADICNGCGYCVGACPFGVIERRTD 251


>gi|224370172|ref|YP_002604336.1| HdrL3 [Desulfobacterium autotrophicum HRM2]
 gi|223692889|gb|ACN16172.1| HdrL3 [Desulfobacterium autotrophicum HRM2]
          Length = 1487

 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 7    ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ENC  C    CV  CP +      E    I P  C  CGVC  ECP   IK
Sbjct: 1418 ENCAAC--LICVRSCPYNVPVINAEGVSYIDPALCQGCGVCAAECPAKTIK 1466


>gi|15644905|ref|NP_207075.1| ferredoxin [Helicobacter pylori 26695]
 gi|188527083|ref|YP_001909770.1| ferredoxin [Helicobacter pylori Shi470]
 gi|208434223|ref|YP_002265889.1| ferrodoxin [Helicobacter pylori G27]
 gi|210134475|ref|YP_002300914.1| ferredoxin [Helicobacter pylori P12]
 gi|217031497|ref|ZP_03437002.1| hypothetical protein HPB128_21g55 [Helicobacter pylori B128]
 gi|217033432|ref|ZP_03438862.1| hypothetical protein HP9810_1g46 [Helicobacter pylori 98-10]
 gi|254778980|ref|YP_003057085.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori B38]
 gi|298736776|ref|YP_003729306.1| ferredoxin [Helicobacter pylori B8]
 gi|308182451|ref|YP_003926578.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          PeCan4]
 gi|2313367|gb|AAD07340.1| ferredoxin [Helicobacter pylori 26695]
 gi|188143323|gb|ACD47740.1| ferredoxin [Helicobacter pylori Shi470]
 gi|208432152|gb|ACI27023.1| ferrodoxin [Helicobacter pylori G27]
 gi|210132443|gb|ACJ07434.1| ferredoxin [Helicobacter pylori P12]
 gi|216944137|gb|EEC23565.1| hypothetical protein HP9810_1g46 [Helicobacter pylori 98-10]
 gi|216946697|gb|EEC25293.1| hypothetical protein HPB128_21g55 [Helicobacter pylori B128]
 gi|254000891|emb|CAX28827.1| Putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori B38]
 gi|261837723|gb|ACX97489.1| ferrodoxin [Helicobacter pylori 51]
 gi|297379499|gb|ADI34386.1| Ferredoxin [Helicobacter pylori v225d]
 gi|298355970|emb|CBI66842.1| ferredoxin [Helicobacter pylori B8]
 gi|308061630|gb|ADO03518.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          Cuz20]
 gi|308064636|gb|ADO06528.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          PeCan4]
 gi|315586271|gb|ADU40652.1| ferredoxin [Helicobacter pylori 35A]
 gi|317012119|gb|ADU82727.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          Lithuania75]
 gi|317179328|dbj|BAJ57116.1| ferredoxin [Helicobacter pylori F30]
 gi|332673118|gb|AEE69935.1| ferredoxin [Helicobacter pylori 83]
          Length = 84

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECPVD 53
          M+ +V + CI C    C E CP +   EG+    I PD C +C         C   CPVD
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVD 58

Query: 54 AIKPD 58
          AI PD
Sbjct: 59 AILPD 63


>gi|325265417|ref|ZP_08132141.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
 gi|324029418|gb|EGB90709.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
          Length = 503

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C EVCP     F  G++F  I  ++CI CG C+  CP DAI     
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKGAISFVNGKSF--IDQEKCIKCGKCKSVCPYDAIAKKER 174

Query: 61  P 61
           P
Sbjct: 175 P 175



 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 31/136 (22%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  E CI C    C  VCP D   + E                     I P++C+ CG
Sbjct: 147 SFIDQEKCIKC--GKCKSVCPYDAIAKKERPCKNACGVSAIGSDKYGRAFIDPEKCVSCG 204

Query: 45  VCEPECPVDAIKPDT---------EPGLELWLKINSEYATQWP-NITTKKESLPSAAKMD 94
           +C   CP  AI   +         + G E+  +I   +  Q+  NIT +  ++ +A +  
Sbjct: 205 MCMVSCPFGAISDKSQIFQLTNALQEGGEIVAEIAPAFVGQFGDNITPR--NIKAALQEL 262

Query: 95  GVKQKYEKYFSPNPGG 110
           G  + YE     + G 
Sbjct: 263 GFSEVYEVALGADIGA 278


>gi|307133273|ref|YP_003885289.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
 gi|306530802|gb|ADN00733.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
          Length = 664

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+ + C +VCP       ++ + +  ++CI C  C   CP  AI  +T+
Sbjct: 56  CRHCEDSPCAKVCPTQALVRKQDGIQLVAEKCIGCKTCVLACPFGAISVETQ 107


>gi|269139048|ref|YP_003295749.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984709|gb|ACY84538.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|304558980|gb|ADM41644.1| Electron transport complex protein RnfB [Edwardsiella tarda FL6-60]
          Length = 191

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        L  +  D+C  CG+C P CP   I+
Sbjct: 115 NCIGC--TKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQ 162


>gi|168238265|ref|ZP_02663323.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194738104|ref|YP_002115589.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713606|gb|ACF92827.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288840|gb|EDY28213.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|330829820|ref|YP_004392772.1| hydrogenase 4 Fe-S subunit [Aeromonas veronii B565]
 gi|328804956|gb|AEB50155.1| Hydrogenase 4 Fe-S subunit [Aeromonas veronii B565]
          Length = 221

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C+H D   C++VCPV+   +  + + ++   CI C +C   CP  AI    + G    
Sbjct: 49  VQCRHCDDAPCIKVCPVEAIRQTGDCVQLNESLCIGCNLCAVACPFGAI----QSGGSRP 104

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           + + + Y T  P   + + S PS +   G++   E   S  PG ++
Sbjct: 105 VAVATSYDTYIP--CSIRSSNPSTSA--GLRCFGEDLLSWEPGVRS 146


>gi|323484489|ref|ZP_08089855.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323692550|ref|ZP_08106783.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402267|gb|EGA94599.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323503416|gb|EGB19245.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 439

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------EGENF----LAIHPDECIDCGVCEPECP 51
           V  E CI C    C +VCPV            EGE        +  D C+ CGVC   CP
Sbjct: 290 VNMETCIGCGK--CAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKDICLGCGVCVRNCP 347

Query: 52  VDAIKPDTEPGLELWLKINSEY 73
           V AI+ +  P +++   +NS +
Sbjct: 348 VSAIRLEKRP-VQIITPVNSTH 368


>gi|260430223|ref|ZP_05784197.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
 gi|260418695|gb|EEX11951.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
          Length = 461

 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           V T  C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  D
Sbjct: 309 VDTGACTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGICATVCPEDAITLD 363



 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 10  ILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +LC H        T C+++CP        + + I P  C  CG C   CP  A+  D  P
Sbjct: 79  LLCAHSRAGQTGCTRCLDLCPTGAILPDGDHVTIDPMICAGCGACSAACPSGAVSYDAPP 138


>gi|168704743|ref|ZP_02737020.1| Ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 67

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +  ++   CI C   DCV VCPV C    G       P +C+ C +CE  CP DAI+
Sbjct: 7  LPVLLDARCIGCG--DCVAVCPVGCLAMAGPRPWLPRPRDCVSCSLCELVCPADAIE 61


>gi|168261433|ref|ZP_02683406.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349505|gb|EDZ36136.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|168232096|ref|ZP_02657154.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472499|ref|ZP_03078483.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458863|gb|EDX47702.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333575|gb|EDZ20339.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQEDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|326402930|ref|YP_004283011.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
 gi|325049791|dbj|BAJ80129.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 39/90 (43%), Gaps = 20/90 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        EG     F  I+   CI CG CE  CP  AI+ 
Sbjct: 49  ERCVSCYL--CAVACPVDCISLQKTEAEGRWYPEFFRINFSRCIFCGFCEEACPTYAIQ- 105

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESL 87
              P  E+     SEY  Q  N+  +KE L
Sbjct: 106 -LTPDFEM-----SEYDRQ--NLVYEKEHL 127


>gi|317008927|gb|ADU79507.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          India7]
          Length = 84

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECPVD 53
          M+ +V + CI C    C E CP +   EG+    I PD C +C         C   CPVD
Sbjct: 1  MSLLVNDECIACDA--CREECPSEAIEEGDPIYHIDPDRCTECYGYDDDEPRCVSVCPVD 58

Query: 54 AIKPD---TEPGLELWLKINS 71
          AI PD    E   EL  K  S
Sbjct: 59 AILPDPNNAESKEELKYKYES 79


>gi|317483797|ref|ZP_07942737.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924900|gb|EFV46046.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 419

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 17  CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C +VCPV+  +      G+ F  + P+ CI CGVC   C    +  +  P
Sbjct: 296 CEKVCPVNAIHMEDGPAGKRFAFVDPERCIGCGVCVRSCAFGQLTLEARP 345



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           NF+A   ++C  CG CE  CPV+AI  +  P 
Sbjct: 281 NFIARAGNDCRGCGKCEKVCPVNAIHMEDGPA 312


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y++ E  CI C  T C +VCPV C   + +    I  ++CI CG C   CPV+AI
Sbjct: 568 LKYMINEEKCIGC--TKCAKVCPVSCISGKVKEKHVIDQNQCIKCGACFDACPVNAI 622


>gi|317055121|ref|YP_004103588.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
          domain-containing protein [Ruminococcus albus 7]
 gi|315447390|gb|ADU20954.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Ruminococcus albus 7]
          Length = 410

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDE--CIDCGVCEPECPV-DAIKPD 58
          V ++C  C  + C+  CP +C     +GE FL  + DE  C+DCG C   CPV    K D
Sbjct: 7  VKKDC--CGCSACMNSCPRNCITMQPDGEGFLYPNVDEKLCVDCGRCVNVCPVLKEKKTD 64

Query: 59 TEP 61
           +P
Sbjct: 65 NKP 67


>gi|134299396|ref|YP_001112892.1| electron transfer flavoprotein subunit beta [Desulfotomaculum
          reducens MI-1]
 gi|134052096|gb|ABO50067.1| electron transfer flavoprotein beta-subunit [Desulfotomaculum
          reducens MI-1]
          Length = 439

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M   V+  C+ C+   C+  CP +  F        + P++C+DCG C   CPV+A+
Sbjct: 1  MAVKVSSACMGCQA--CITSCPHEALFMNDAGVCQVIPEKCVDCGECVEVCPVEAL 54


>gi|260913421|ref|ZP_05919900.1| anaerobic dimethyl sulfoxide reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632495|gb|EEX50667.1| anaerobic dimethyl sulfoxide reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 205

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +Y ++ +C  C +  CV VCP    ++  + F+ ++ D CI C  C   CP DA + D 
Sbjct: 59  FSYYMSISCNHCDNPACVTVCPTGAMHKNADGFVIVNEDICIGCRYCHMACPYDAPQYDV 118

Query: 60  EPG 62
             G
Sbjct: 119 VKG 121


>gi|255525440|ref|ZP_05392378.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296187867|ref|ZP_06856261.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510907|gb|EET87209.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296047824|gb|EFG87264.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 268

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          E CI C    CV  CP+     GEN    I+ D C+ CG C   CP +AI     P   L
Sbjct: 9  EKCIKC--GACVMECPISILRMGENGPEEIYEDRCMSCGHCVAVCPKEAIDNKKSP---L 63

Query: 66 WLKINSEYATQ 76
           +++N++  T+
Sbjct: 64 SMQVNAKNLTR 74


>gi|254517435|ref|ZP_05129491.1| ferredoxin [Clostridium sp. 7_2_43FAA]
 gi|226911184|gb|EEH96385.1| ferredoxin [Clostridium sp. 7_2_43FAA]
          Length = 56

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M + + ++C+ C    C   CPV+   +G+    I  D CIDCG C   CPV A
Sbjct: 1  MAFKIEDSCVNCGA--CAAECPVNAISQGDTQFVIDEDTCIDCGNCANVCPVGA 52


>gi|91978474|ref|YP_571133.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91684930|gb|ABE41232.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C +  C  +   D ++EG + + I P  CI C +C   C +D IK  T P
Sbjct: 552 CQSCMNLGCPALTWSDEWFEGRHRVKIDPASCIGCTLCAQVCTIDCIKIATPP 604


>gi|166712771|ref|ZP_02243978.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 142

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 83  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIQ 137


>gi|56412594|ref|YP_149669.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361529|ref|YP_002141165.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126851|gb|AAV76357.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093005|emb|CAR58438.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 287

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 25/118 (21%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P    K+ 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPGWSFKHV 142


>gi|83590042|ref|YP_430051.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
            39073]
 gi|83572956|gb|ABC19508.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
            thermoacetica ATCC 39073]
          Length = 1487

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 4    VVTEN-CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
            VV EN C  C    CV VCP +     E N   I+  +C+ CG C  ECP  AI+
Sbjct: 1415 VVDENKCAAC--LTCVRVCPFNVPRINERNVAEINAVQCMGCGTCAGECPAKAIQ 1467


>gi|88808579|ref|ZP_01124089.1| ferredoxin [Synechococcus sp. WH 7805]
 gi|88787567|gb|EAR18724.1| ferredoxin [Synechococcus sp. WH 7805]
          Length = 74

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVDA 54
           DCV+ CPV C         +G +F  I  + CIDCG+C   CPVD 
Sbjct: 14 ADCVDACPVACIQPGKGKNKKGTDFYWIDFETCIDCGICLQVCPVDG 60


>gi|113971773|ref|YP_735566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886457|gb|ABI40509.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 188

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPYKVRFMNPETK 114


>gi|296313314|ref|ZP_06863255.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296840194|gb|EFH24132.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 279

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|161170223|gb|ABX59194.1| FeS cluster containing hydrogenase components 1 [uncultured marine
           group II euryarchaeote EF100_57A08]
          Length = 470

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+ + C  +CP    +  E+  +    D CI C  C   CP DA+  D   G
Sbjct: 58  CNHCEDSPCTTICPTTALFTREDGIVDFDDDRCIGCKSCMQACPYDALYIDPNKG 112


>gi|254361807|ref|ZP_04977942.1| tetrathionate reductase subunit B [Mannheimia haemolytica PHL213]
 gi|261491590|ref|ZP_05988173.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261494950|ref|ZP_05991419.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153093342|gb|EDN74338.1| tetrathionate reductase subunit B [Mannheimia haemolytica PHL213]
 gi|261309359|gb|EEY10593.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312716|gb|EEY13836.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 242

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + I+ ++CI CG C   CP DA
Sbjct: 97  LCNHCDQPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDA 144


>gi|158520473|ref|YP_001528343.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509299|gb|ABW66266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 361

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C+   C ++CP++     ++   +    CI CGVC   CP DA+
Sbjct: 295 VDADTCTGCEA--CADICPMEAIEMKDDIAHVSDSRCIGCGVCAYHCPADAL 344


>gi|54298873|ref|YP_125242.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
 gi|53752658|emb|CAH14093.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
          Length = 204

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C  T C++ CPVD        + AI   EC  CG+C   CPVD I+  + P 
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIIAHECTGCGLCVDPCPVDCIEMVSLPA 136


>gi|148260117|ref|YP_001234244.1| NADH-quinone oxidoreductase, chain I [Acidiphilium cryptum JF-5]
 gi|146401798|gb|ABQ30325.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
          Length = 170

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 39/90 (43%), Gaps = 20/90 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        EG     F  I+   CI CG CE  CP  AI+ 
Sbjct: 49  ERCVSCYL--CAVACPVDCISLQKTEAEGRWYPEFFRINFSRCIFCGFCEEACPTYAIQ- 105

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESL 87
              P  E+     SEY  Q  N+  +KE L
Sbjct: 106 -LTPDFEM-----SEYDRQ--NLVYEKEHL 127


>gi|307822808|ref|ZP_07653039.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum
           SV96]
 gi|307736412|gb|EFO07258.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum
           SV96]
          Length = 171

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E EN      F  I+   CI CG CE  CP +AI+
Sbjct: 49  ERCVACNL--CAVACPVDCIVLQKAEDENGRWYPEFFRINFSRCIMCGFCEEACPTNAIQ 106

Query: 57  --PDTE 60
             PD E
Sbjct: 107 LTPDFE 112


>gi|262372076|ref|ZP_06065355.1| electron transport complex protein [Acinetobacter junii SH205]
 gi|262312101|gb|EEY93186.1| electron transport complex protein [Acinetobacter junii SH205]
          Length = 266

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK-- 56
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I   
Sbjct: 86  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLV 143

Query: 57  PDTEP 61
           PD  P
Sbjct: 144 PDNNP 148


>gi|256810211|ref|YP_003127580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793411|gb|ACV24080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 390

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C    CVEVCP D    + EN + + P  C  CG+C   CPV+A++ D +
Sbjct: 202 VEAEKCIYC--LKCVEVCPGDMIKVDNENMIVVPPKSCPACGLCVNICPVNALELDVK 257


>gi|213579914|ref|ZP_03361740.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 259

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|124028465|ref|YP_001013785.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
 gi|123979159|gb|ABM81440.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
          Length = 651

 Score = 38.5 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV  E C  C        CP       +    + P  C  CGVC   CP  A KP ++P 
Sbjct: 580 YVDEEKCTACGICYTAFNCPA-IRRRPDGKAMVDPALCTGCGVCAQVCPFGAFKP-SQPP 637

Query: 63  LELWLKI 69
            E WLKI
Sbjct: 638 SEEWLKI 644


>gi|160872682|ref|ZP_02062814.1| iron-sulfur cluster binding protein [Rickettsiella grylli]
 gi|159121481|gb|EDP46819.1| iron-sulfur cluster binding protein [Rickettsiella grylli]
          Length = 217

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           MT  + E+ CI C  T C++ CPVD      +    +   EC  CG+C   CPVD I
Sbjct: 88  MTARIRESECIGC--TKCIQACPVDAIVGAAKQLHVVLKQECTGCGLCIAPCPVDCI 142


>gi|15644044|ref|NP_229093.1| ferredoxin [Thermotoga maritima MSB8]
 gi|170289313|ref|YP_001739551.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermotoga sp. RQ2]
 gi|4981847|gb|AAD36363.1|AE001784_5 ferredoxin [Thermotoga maritima MSB8]
 gi|170176816|gb|ACB09868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
          sp. RQ2]
          Length = 95

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
          V   C+ C   +CV+VCPV+     EN  A+  + +CI CG C   CPV AI+P+ E
Sbjct: 4  VNSKCVGC--GNCVKVCPVEGAIRIENGKAVIDNYKCIRCGKCFDACPVGAIRPNYE 58


>gi|224588326|gb|ACN58950.1| iron-sulfur cluster-binding protein [uncultured bacterium BLR10]
          Length = 245

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI--KP 57
           + Y+    CI C  T C++ CPVD        +  + PD C  C +C   CPVD I   P
Sbjct: 79  VAYIDESLCIGC--TLCIQACPVDAIIGAAKLMHTVVPDLCTGCDLCVNPCPVDCIVMHP 136

Query: 58  DTE-PGLELWLKINSEYATQ 76
            TE  G   W + +++ A +
Sbjct: 137 VTETTGWNAWRQADADAARE 156


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|52549490|gb|AAU83339.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27E7]
          Length = 267

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           C E+C VD          I  D+CI CG C   CP +A+  +TE G  +W+  N
Sbjct: 126 CAELCRVDAISIVLGKSVIDSDKCISCGWCIRGCPHEAV-IETERGYTMWIGGN 178


>gi|227496205|ref|ZP_03926509.1| formate dehydrogenase beta subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834258|gb|EEH66641.1| formate dehydrogenase beta subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 348

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 152 SDVCKHCTHAGCLDVCPTGALFRSEFGSVVVQADVCNGCGYCVAACPFGVI 202


>gi|188587655|ref|YP_001920981.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188497936|gb|ACD51072.1| nitroreductase family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 273

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 2/113 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V  E CI CK   C+  CPV      +    I  + CI CG C   CP  A+  D  
Sbjct: 1   MFEVNKEKCISCKQ--CINDCPVSDILLIDGKANIKNESCIKCGHCIAICPTKAVSTDDY 58

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
              E+     SE++ +  N+    +   S  K   +K + EK       G+ T
Sbjct: 59  NMDEVKEYNKSEFSIESDNLLNFIKFRRSVRKFKDIKVEKEKIRKIIEAGRFT 111


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|160942972|ref|ZP_02090210.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445666|gb|EDP22669.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
          Length = 538

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI     P
Sbjct: 142 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQDKCIKCGRCVTVCPYNAIVKTERP 198


>gi|119873478|ref|YP_931485.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674886|gb|ABL89142.1| formate dehydrogenase beta subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 278

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC+ C    C   CPV       E  + I+ DEC+ CG C+  CP D  K
Sbjct: 94  NCMHCVEAPCARACPVGAIKVTPEGAVVINRDECVGCGYCQMACPYDVPK 143


>gi|325205297|gb|ADZ00750.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M04-240196]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|254805750|ref|YP_003083971.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254669291|emb|CBA08254.1| putative ferredoxin [Neisseria meningitidis alpha14]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|159905551|ref|YP_001549213.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanococcus maripaludis C6]
 gi|159887044|gb|ABX01981.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanococcus maripaludis C6]
          Length = 85

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + C+ C++  C   CP  C  E +    I  D C  C +CE ECPV AIK + E
Sbjct: 32 DKCVKCEN--CYIFCPEGCIQEKDGKFEIDYDYCKGCRICEKECPVKAIKTERE 83


>gi|20089354|ref|NP_615429.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19914246|gb|AAM03909.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 59

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C  C    CVE CPV+     E      +  DEC+DCG CE  CPV AIK
Sbjct: 8  EECTACGT--CVEECPVEAIVIDEDAGCAVVDEDECVDCGACEEACPVGAIK 57


>gi|304314083|ref|YP_003849230.1| HycB-related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587542|gb|ADL57917.1| HycB-related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 10  ILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I C H       C+ +CP D   E +  + I  D+CI CG+C   CP+ AI  + E G+ 
Sbjct: 34  IFCMHCAPERAPCLNICPEDAIVEVDGAVVILEDKCIGCGLCRDACPIGAITIN-ERGVA 92

Query: 65  LWLKINSEYATQWPNITTKKESLPS------AAKMDGVKQKYEKY 103
           +   +  +       +   K++L        AAK D +  ++++ 
Sbjct: 93  VKCDLCVDREKPLCVMVCPKKALSESSEDIMAAKRDKITGEFKRL 137


>gi|41582337|gb|AAS07951.1| NADH-quinone oxidoreductase, chain I [uncultured marine bacterium
           463]
          Length = 175

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC    +           F  I+   CI CG+CE  CP +AI+
Sbjct: 53  ERCVACNL--CAVACPVDCIALQQGVKEDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQ 110

Query: 57  --PDTE 60
             PD E
Sbjct: 111 LTPDFE 116


>gi|325145280|gb|EGC67558.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240013]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|289676762|ref|ZP_06497652.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae FF5]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGASRLMHTVIIDECTGCDLCVAPCPVDCIE 137


>gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 310

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 7   ENCILCKHTDCV------EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E+ +L  H  C+      E+CP +  +  +N   I+ ++C  C +C+  CPV+AI+
Sbjct: 54  ESQLLIHHNSCMDCGLCQEICPENAIFTEQNSTQINQEKCKKCSICQESCPVNAIE 109


>gi|163858985|ref|YP_001633283.1| iron-sulfur cluster-binding protein [Bordetella petrii DSM 12804]
 gi|163262713|emb|CAP45016.1| iron-sulfur cluster-binding protein [Bordetella petrii]
          Length = 698

 Score = 38.1 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP DAI+
Sbjct: 564 VDAQACTLC--MSCVSACPAHALQDNPQLPQLRFIEKNCVQCGLCEKTCPEDAIQ 616


>gi|120603320|ref|YP_967720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120563549|gb|ABM29293.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 170

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C + CP   + + +   + +    CI CG C   CPVDA+  D E GL
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 109


>gi|254481086|ref|ZP_05094332.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine
           gamma proteobacterium HTCC2148]
 gi|214038881|gb|EEB79542.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine
           gamma proteobacterium HTCC2148]
          Length = 175

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC    +           F  I+   CI CG+CE  CP +AI+
Sbjct: 53  ERCVACNL--CAVACPVDCIALQQGVKEDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQ 110

Query: 57  --PDTE 60
             PD E
Sbjct: 111 LTPDFE 116


>gi|154148497|ref|YP_001407281.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           hominis ATCC BAA-381]
 gi|153804506|gb|ABS51513.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter hominis ATCC
           BAA-381]
          Length = 188

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T     +C++C+++ CVEVCP    ++ EN +  I+ + C+ C  C   CP DA
Sbjct: 51  TDFTRHSCVMCENSPCVEVCPTGASFKTENGITLINHNLCVSCKYCILACPYDA 104


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|158522835|ref|YP_001530705.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158511661|gb|ABW68628.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 699

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 14  HTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + DC++ C  D    GE+ +  + P +C+ CG CE  CP + I+  T
Sbjct: 140 YGDCIKACAFDAIVMGEDGYPVVDPAKCVGCGACEAVCPKNIIRVKT 186


>gi|119719691|ref|YP_920186.1| thiamine pyrophosphate binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524811|gb|ABL78183.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Thermofilum
           pendens Hrk 5]
          Length = 623

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           YV  E C+ C    CV+   CP     E +  + I P+ C+ CGVC   CP  AI P
Sbjct: 564 YVDQERCVRCG--ICVDKFSCPA-IVREEDGRVVILPEVCVGCGVCATICPAKAIHP 617


>gi|52843076|ref|YP_096875.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630187|gb|AAU28928.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 204

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C  T C++ CPVD        + AI   EC  CG+C   CPVD I+  + P 
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEMVSLPA 136


>gi|89896878|ref|YP_520365.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336326|dbj|BAE85921.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 231

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           LC H D   CV  CP    Y+ +  L +H P++CI C  C   CP + I  + +     W
Sbjct: 57  LCNHCDQAACVRACPTKAMYKDDKGLTLHNPNKCIGCKSCMLACPYEVINYNAKEPHGHW 116

Query: 67  ---LKINSEYATQWPNITTK-KESLP-----SAAKMDGVKQK 99
              + + ++  T       K  E +P      AA  DG++ K
Sbjct: 117 RDKISVIAQCTTNGAETAEKVGEKIPYYNPDRAATYDGIRPK 158


>gi|308270150|emb|CBX26762.1| Ferredoxin-2 [uncultured Desulfobacterium sp.]
          Length = 95

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG-- 62
          T+ CI C    C+EVCP   F   G+  +  + D C++CG C   CP  AI  D+  G  
Sbjct: 17 TKKCIGCGR--CLEVCPHQVFSLAGKKAIITNFDACMECGACAINCPSTAIFVDSGVGCA 74

Query: 63 ---LELWLKINSEYATQ 76
             +  W++    + T 
Sbjct: 75 TGLINEWIRDQKFFRTH 91


>gi|134100101|ref|YP_001105762.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291002905|ref|ZP_06560878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912724|emb|CAM02837.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 300

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  D  PG  
Sbjct: 120 SDVCKHCTHAACLDVCPTGALFRTEYGTVVVQDDVCNGCGYCVPACPYGVI--DIRPGDG 177

Query: 65  LWLKINSEYATQWPNIT 81
              K    Y  Q   + 
Sbjct: 178 GAFKCTMCYDRQGARLA 194


>gi|15922102|ref|NP_377771.1| anaerobic dimethyl sulfoxide reductase [Sulfolobus tokodaii str. 7]
 gi|15622890|dbj|BAB66880.1| 391aa long hypothetical anaerobic dimethyl sulfoxide reductase
           [Sulfolobus tokodaii str. 7]
          Length = 391

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C++VCP +  ++ +   + I+ +ECI CG C+  CP +  K + E
Sbjct: 51  CNHCENPLCMKVCPANAIHKDDMGIVYINGNECIGCGYCQWACPYEEPKFNHE 103


>gi|329936419|ref|ZP_08286184.1| ferredoxin iron-sulfur binding domain protein [Streptomyces
           griseoaurantiacus M045]
 gi|329304215|gb|EGG48096.1| ferredoxin iron-sulfur binding domain protein [Streptomyces
           griseoaurantiacus M045]
          Length = 337

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  +PD
Sbjct: 148 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQEDVCNGCGYCVPACPYGVIEQRPD 203


>gi|254496015|ref|ZP_05108918.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
 gi|254354764|gb|EET13396.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
          Length = 204

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD     G+   A+   EC  CG+C   CPVD I
Sbjct: 84  CIGC--TKCIKACPVDAIIGSGKLMHAVIAHECTGCGLCVAPCPVDCI 129


>gi|254491482|ref|ZP_05104661.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224462960|gb|EEF79230.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 517

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV VCPV    +G +   L    D C+ CG+C+  CP DAI
Sbjct: 393 QACTLC--MSCVSVCPVGAVVDGVDKPQLNFIEDLCVQCGICDTACPEDAI 441


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|257437704|ref|ZP_05613459.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257200011|gb|EEU98295.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 56

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCGA--CEGACPVGAVTIENGVAVVNADACIDCGACEGACPTGAIAAE 56


>gi|16761442|ref|NP_457059.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29140861|ref|NP_804203.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213026884|ref|ZP_03341331.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213163416|ref|ZP_03349126.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213649659|ref|ZP_03379712.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213857323|ref|ZP_03384294.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25512770|pir||AF0822 probable polyferredoxin STY2772 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503742|emb|CAD02730.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136486|gb|AAO68052.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 287

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 25/118 (21%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P    K+ 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPGWSFKHV 142


>gi|307155160|ref|YP_003890544.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 7822]
 gi|306985388|gb|ADN17269.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7822]
          Length = 75

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 10/66 (15%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DCV+ CPV C +       +G ++  I    CIDCG+C   CPV+ AI
Sbjct: 5  IVTETCE--GVADCVKACPVACIHPGPGKNIKGTDWFWIDFATCIDCGICLSVCPVEGAI 62

Query: 56 KPDTEP 61
           P+  P
Sbjct: 63 IPEERP 68


>gi|55378121|ref|YP_135971.1| formate dehydrogenase-O iron-sulfur subunit [Haloarcula marismortui
           ATCC 43049]
 gi|55230846|gb|AAV46265.1| formate dehydrogenase-O iron-sulfur subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 220

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK-PDTEP 61
            V   C  C +  CV VCP D     EN F+ +  D CI C  C   CP  A + PD + 
Sbjct: 84  AVPMQCYHCSNAPCVSVCPTDSLISKENGFVRVRDDLCIGCQYCLSACPFGAPQFPDEDS 143

Query: 62  GL 63
           G+
Sbjct: 144 GV 145


>gi|261391743|emb|CAX49192.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|325197493|gb|ADY92949.1| iron-sulfur cluster-binding protein [Neisseria meningitidis G2136]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|147920950|ref|YP_685242.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured
          methanogenic archaeon RC-I]
 gi|110620638|emb|CAJ35916.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured
          methanogenic archaeon RC-I]
          Length = 95

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 4  VVTENCILCKHT--DCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +  E CI CK     C +  P +C ++G+     I+ D C  CGVC  ECPVDAI+   E
Sbjct: 34 ISQEKCIGCKRCADSCPDGAPFECAHDGKKKKFCINYDYCKGCGVCAYECPVDAIEMVVE 93


>gi|59711966|ref|YP_204742.1| formate dehydrogenase N, beta subunit [Vibrio fischeri ES114]
 gi|197334851|ref|YP_002156159.1| formate dehydrogenase iron-sulfur subunit [Vibrio fischeri MJ11]
 gi|59480067|gb|AAW85854.1| formate dehydrogenase N, beta subunit [Vibrio fischeri ES114]
 gi|197316341|gb|ACH65788.1| formate dehydrogenase iron-sulfur subunit [Vibrio fischeri MJ11]
          Length = 202

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           ++  C+ C    C  VCP DCF   E+ +  H  D CI CG C   CP  A
Sbjct: 53  ISVACMHCTDAPCKAVCPADCFEHTEDGIVRHNKDLCIGCGYCLFACPFGA 103


>gi|328952049|ref|YP_004369383.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452373|gb|AEB08202.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1014

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 17  CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CV  CP D  F   + +  I P +C  CGVC  ECP  AI+
Sbjct: 953 CVRACPFDVPFINDKGYSEIDPAKCHGCGVCAAECPAKAIQ 993


>gi|319411308|emb|CBY91719.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325130942|gb|EGC53669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           OX99.30304]
 gi|325135016|gb|EGC57644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M13399]
 gi|325137038|gb|EGC59634.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M0579]
 gi|325202960|gb|ADY98414.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240149]
 gi|325207242|gb|ADZ02694.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           NZ-05/33]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|304389020|ref|ZP_07371066.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
 gi|304337001|gb|EFM03189.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|254670133|emb|CBA05130.1| putative ferredoxin [Neisseria meningitidis alpha153]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|121634081|ref|YP_974326.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|120865787|emb|CAM09516.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|325133026|gb|EGC55699.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M6190]
 gi|325139098|gb|EGC61644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           ES14902]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|160878251|ref|YP_001557219.1| ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
 gi|160426917|gb|ABX40480.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
          Length = 484

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+NC  C    C + C         +   I P +C +CG+C   CP +AI     P
Sbjct: 95  FLVTDNCQKCMGKRCQKACNFQAISMSHDRAHIDPAKCKECGMCASACPYNAIADLKRP 153


>gi|15676135|ref|NP_273266.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|7225430|gb|AAF40665.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|316985127|gb|EFV64079.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           meningitidis H44/76]
 gi|325199417|gb|ADY94872.1| iron-sulfur cluster-binding protein [Neisseria meningitidis H44/76]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|325129008|gb|EGC51858.1| iron-sulfur cluster-binding protein [Neisseria meningitidis N1568]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|310825956|ref|YP_003958313.1| hypothetical protein ELI_0331 [Eubacterium limosum KIST612]
 gi|308737690|gb|ADO35350.1| hypothetical protein ELI_0331 [Eubacterium limosum KIST612]
          Length = 139

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +TE CI C  T C   CPV     E +    ++   CIDCGVC   CP  AI
Sbjct: 1  MAYTITEKCIGC--TICARNCPVMAITGEKKKQHVVNDKRCIDCGVCGRSCPQAAI 54


>gi|292492181|ref|YP_003527620.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
 gi|291580776|gb|ADE15233.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
          Length = 180

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCIALQKAEDEQGRWYPEFFRINFSRCIFCGLCEEACPTYAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 116 LTPDFEMG---------EYERQ--NLVYEKEDL 137


>gi|260910260|ref|ZP_05916937.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260635764|gb|EEX53777.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 55

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+  +CI C    C+  CPV+   EG+ +  I  D C +CG C   CP +AI 
Sbjct: 1  MAYVIGNDCIACGT--CLPECPVEAISEGDIY-KIDADACTECGTCASVCPSEAIS 53


>gi|254673479|emb|CBA08875.1| putative ferredoxin [Neisseria meningitidis alpha275]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|92114035|ref|YP_573963.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797125|gb|ABE59264.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 552

 Score = 38.1 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           T+NC LC    CV VCP           A++  E  C+ CG+CE  CP   I
Sbjct: 417 TDNCTLC--MACVAVCPTQALSSPGQSPALNFQESACVQCGLCETACPEQVI 466



 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           LC H        T C++VCP D     +  + I P  C   G C   CP  AI+
Sbjct: 182 LCAHAGRGQSGCTRCLDVCPADAISSVKQEIVIDPFRCHGAGSCTSACPTGAIR 235


>gi|218767102|ref|YP_002341614.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051110|emb|CAM07381.1| putative ferredoxin [Neisseria meningitidis Z2491]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|328952814|ref|YP_004370148.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453138|gb|AEB08967.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1029

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD--TE 60
            + + NC  C    C+ +CP      GE     IH + C  CG+C  +CP  AI     TE
Sbjct: 952  IRSPNCRRC--LSCLAICPFGAVSLGEKGRPTIHVELCRGCGLCAAQCPAQAISMSRLTE 1009

Query: 61   PGLE 64
            P LE
Sbjct: 1010 PELE 1013


>gi|325141137|gb|EGC63638.1| iron-sulfur cluster-binding protein [Neisseria meningitidis CU385]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|317500246|ref|ZP_07958476.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087521|ref|ZP_08336454.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898372|gb|EFV20413.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404066|gb|EGG83615.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 503

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNGRSYIDQEKCIKCGKCKSVCPYDAIAKKERP 175


>gi|308388428|gb|ADO30748.1| putative ferredoxin [Neisseria meningitidis alpha710]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|311232944|gb|ADP85798.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C + CP   + + +   + +    CI CG C   CPVDA+  D E GL
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 109


>gi|323141624|ref|ZP_08076506.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
 gi|322413889|gb|EFY04726.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
          Length = 459

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
            CV++CP +          I  D CIDCG C   CP  A  +K DT  GL
Sbjct: 23 VSCVKLCPTEAIRVRNGKAEILGDRCIDCGACAAGCPYHAFNVKTDTLEGL 73


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSACPVGAI 628


>gi|325203327|gb|ADY98780.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240355]
          Length = 279

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCI 124


>gi|83312388|ref|YP_422652.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947229|dbj|BAE52093.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 242

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           TYV+   C  C    CV VCPV   F + +  + +  D C+ C  C   CP DA
Sbjct: 90  TYVLPRLCNHCSDPPCVGVCPVGATFQQKDGAVMVDSDRCVGCAYCVQACPYDA 143


>gi|327400970|ref|YP_004341809.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316478|gb|AEA47094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 127

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C+ +CPV+     GE  + I+  +CI CG C   CPV A+K
Sbjct: 77  EKCIHC--GACISICPVEAIELNGEKKVVINASKCIHCGNCVNVCPVKALK 125


>gi|254475789|ref|ZP_05089175.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214030032|gb|EEB70867.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 649

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 3   YVVTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           YV +E  +LC H        T C++VCP        + ++I P  C  CG C   CP  A
Sbjct: 260 YVRSEP-LLCAHSRAGQTGCTRCLDVCPTGAISPDGDHVSIDPMICAGCGSCASLCPSGA 318

Query: 55  IKPDTEP 61
           I  D  P
Sbjct: 319 ITYDAPP 325



 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V ++ C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI    EP
Sbjct: 496 VASDKCTLC--LSCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPENAIS--YEP 551

Query: 62  GLEL 65
            L L
Sbjct: 552 RLNL 555


>gi|219853264|ref|YP_002467696.1| glutamate synthase (NADPH) [Methanosphaerula palustris E1-9c]
 gi|219547523|gb|ACL17973.1| Glutamate synthase (NADPH) [Methanosphaerula palustris E1-9c]
          Length = 502

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
          ++ C+LC    CV+ C    F + E  +AI +P  C  C  C   CP DAI    +P
Sbjct: 15 SDQCMLCGR--CVDNCSYGVFQKEEERIAIVNPRNCTACHRCIAMCPRDAISLKEKP 69


>gi|153814717|ref|ZP_01967385.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
 gi|145847748|gb|EDK24666.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
          Length = 503

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNGRSYIDQEKCIKCGKCKSVCPYDAIAKKERP 175


>gi|327400615|ref|YP_004341454.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316123|gb|AEA46739.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 184

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C++VCP+D  Y+  +  + ++ D CI CG C   CP  A
Sbjct: 55  CMHCSDPACLKVCPMDAIYKRSDGIVLVNKDNCIGCGYCSYACPFGA 101


>gi|225181056|ref|ZP_03734503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168253|gb|EEG77057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 416

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E C  C    CV+ CPVD      + E    I  + C+ CGVC  +CP  A+
Sbjct: 286 VLEGCTGCGK--CVQACPVDAIGVTDKEEKKAQIDTEYCLGCGVCTVQCPTKAL 337


>gi|15679728|ref|NP_276846.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622867|gb|AAB86206.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ +CP D   E +  + I  D CI CG+C   CPV AI
Sbjct: 46 CLNICPEDAIVEVDGAVVILEDRCIGCGLCRDACPVGAI 84


>gi|110634782|ref|YP_674990.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285766|gb|ABG63825.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 680

 Score = 38.1 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV  CP     + E+  A++  E  C+ CG+C   CP   I    + 
Sbjct: 519 VDVEGCTLC--LSCVSACPTGALSDSEDRPALYFSESACVQCGLCAATCPEQVITLVPQV 576

Query: 62  GLELW 66
             + W
Sbjct: 577 DFQAW 581



 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDT 59
           LC H        T C+++CP        N +AI  + C  CG C   CP  A     PD 
Sbjct: 276 LCAHSRSRITGCTRCLDLCPTGAITPAGNHVAIDAEICAGCGNCAAVCPTGAAAYAIPDA 335

Query: 60  EPGLE 64
           E  L+
Sbjct: 336 ETLLQ 340


>gi|71274587|ref|ZP_00650875.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71898126|ref|ZP_00680312.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|170730849|ref|YP_001776282.1| ferredoxin [Xylella fastidiosa M12]
 gi|71164319|gb|EAO14033.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71732100|gb|EAO34156.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|167965642|gb|ACA12652.1| ferredoxin II [Xylella fastidiosa M12]
          Length = 139

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 81  VAWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIE 135


>gi|213425327|ref|ZP_03358077.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 281

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 19/109 (17%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DT------- 59
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT       
Sbjct: 29  CTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGDTLVGPFSL 88

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             P ++  L  +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLWHSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|323486564|ref|ZP_08091886.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14163]
 gi|323694298|ref|ZP_08108472.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14673]
 gi|323400157|gb|EGA92533.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14163]
 gi|323501644|gb|EGB17532.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14673]
          Length = 454

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +NC  CK    V+ CPV      +  + I  +EC +CG C  +CP DA+  +T+
Sbjct: 308 ADNCKGCKSCVVVDACPVSAAAVEDGTVRIPEEECNNCGRCTSKCPFDAVTEETK 362


>gi|312898191|ref|ZP_07757582.1| ferredoxin [Megasphaera micronuciformis F0359]
 gi|310620688|gb|EFQ04257.1| ferredoxin [Megasphaera micronuciformis F0359]
          Length = 54

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +VV++ C+ C    C   CP     EGE    +  D CIDCG CE  CP  AI  +
Sbjct: 2  HVVSDECVKCGA--CEATCPTGAITEGETKYVVG-DACIDCGACESVCPTGAIAAE 54


>gi|303328543|ref|ZP_07358979.1| tetrathionate reductase complex, subunit B [Desulfovibrio sp.
           3_1_syn3]
 gi|302861374|gb|EFL84312.1| tetrathionate reductase complex, subunit B [Desulfovibrio sp.
           3_1_syn3]
          Length = 245

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C  CK   C+ VCPV   Y+ +N  + I    CI CG C   CP DA
Sbjct: 95  CNHCKEPACLPVCPVKATYQHDNGIVVIDASACIGCGFCVQACPYDA 141


>gi|289422669|ref|ZP_06424509.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
 gi|289156848|gb|EFD05473.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
          Length = 515

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  T  C  C    CVEVCP +      G++F  I  ++CI CG C+  CP  AI     
Sbjct: 116 FFTTNTCRGCLARPCVEVCPKNAISMVNGKSF--IDQEKCIKCGRCKSSCPYGAIAKLER 173

Query: 61  P 61
           P
Sbjct: 174 P 174


>gi|328951931|ref|YP_004369265.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452255|gb|AEB08084.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 526

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 20/67 (29%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVD----CFYEGE-----------NFLAIHPDECIDCGV 45
           + Y    +C++C+     E CP       F+EGE               ++PD+CI CG+
Sbjct: 449 IPYTEGRDCLVCE-----EHCPTAPKAITFHEGEVQDLNGKRMPVKLPRVNPDQCIGCGI 503

Query: 46  CEPECPV 52
           CE +CPV
Sbjct: 504 CENKCPV 510


>gi|295103488|emb|CBL01032.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 517

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI     P
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQDKCIKCGRCVTVCPYNAIVKTERP 177


>gi|261403277|ref|YP_003247501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370270|gb|ACX73019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 164

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          I+C+H     C EVCPV      + ++ ++ D CI CG+C   CP  AI
Sbjct: 42 IICQHCASAPCKEVCPVSAIEHKDGYVYLNEDICIGCGLCALACPFGAI 90


>gi|256827734|ref|YP_003151693.1| 4Fe-4S protein [Cryptobacterium curtum DSM 15641]
 gi|256583877|gb|ACU95011.1| 4Fe-4S protein [Cryptobacterium curtum DSM 15641]
          Length = 384

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 17 CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CV +CP+D     E N L I  + C+ CG C   CP +A+ P   P
Sbjct: 39 CVAICPIDETITIEKNNLLIDFERCVSCGACTTACPTNALAPLDPP 84


>gi|190192132|dbj|BAG48267.1| 4Fe-4S type iron-sulfur protein [Microcystis aeruginosa NIES-843]
          Length = 74

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV  CPV C +       +G ++  I    CIDCG+C   CPV+ AI P   P L+
Sbjct: 14 ADCVSACPVACIHPGPGKNVKGTDWYWIDFATCIDCGICLQVCPVEGAILPQERPDLQ 71


>gi|157377341|ref|YP_001475941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319715|gb|ABV38813.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 231

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  V   C  C +  CV VCPV+  Y+ E    + I  +ECI C +C   CP  A + D
Sbjct: 81  TLAVPNQCNQCDNPACVYVCPVEATYKREEDGIVVIDHEECIHCQLCVDACPYGARRKD 139


>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
 gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
          Length = 443

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +TE C+ C  T C  VCPV C   + +    I   +C+ CG C   CP+ A+      
Sbjct: 27  FQITEKCVGC--TKCARVCPVSCISGKVKERHVIDTTKCVKCGQCISACPMGALP----- 79

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                 KIN  + ++      +K+ L        ++    +YF   PG
Sbjct: 80  ------KIN--FISEAKKALNQKDKLVITQVAPAIRATLGEYFGLEPG 119


>gi|224368549|ref|YP_002602712.1| iron-sulfur cluster-binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691265|gb|ACN14548.1| iron-sulfur cluster-binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 422

 Score = 38.1 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA--IKPD 58
           C+ C+   C+  CPV    +G++  + I+P  C  CG+C   CP  A  I PD
Sbjct: 76  CLHCQEPLCIPACPVRAIEKGKDGIVRINPALCTGCGICALACPEAAPMITPD 128


>gi|161612713|ref|YP_001586678.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161362077|gb|ABX65845.1| hypothetical protein SPAB_00411 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 287

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 25/112 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFSLAKGQVSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P 
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEPG 136


>gi|308051326|ref|YP_003914892.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307633516|gb|ADN77818.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
            +Y V+  C  C +  CV+ CP    ++  +   +H D+  C+ C  C   CP DA + D
Sbjct: 62  FSYYVSIGCNHCSNPVCVKACPTGAMHKRRSDGLVHVDQGICVGCEACARACPYDAPQID 121

Query: 59  TEPGL 63
            + G+
Sbjct: 122 KDRGV 126


>gi|291550262|emb|CBL26524.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus torques L2-14]
          Length = 434

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C EVCP        G++F  I  D+CI CG C+  CP DAI     
Sbjct: 48  YEVSNVCKGCLAHPCQEVCPRGAISMVNGKSF--IDQDKCIKCGKCKSVCPYDAIAKKER 105

Query: 61  P 61
           P
Sbjct: 106 P 106


>gi|325680883|ref|ZP_08160420.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324107347|gb|EGC01626.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 405

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV-DA 54
          ++ +V ++C  C  + C+  CP DC       EG ++      +CIDCG C   CPV + 
Sbjct: 3  ISELVKKDC--CGCSACMNSCPKDCIKMKPDKEGFSYPVTDAAKCIDCGRCTKVCPVLNK 60

Query: 55 IKPDTEP 61
           K D  P
Sbjct: 61 NKTDDRP 67


>gi|260888133|ref|ZP_05899396.1| putative polyferredoxin [Selenomonas sputigena ATCC 35185]
 gi|260862162|gb|EEX76662.1| putative polyferredoxin [Selenomonas sputigena ATCC 35185]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 17  CVEVCPVDCF---YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CV +CP        EGE+F LA  P  C  CG+C   CP  A++    P  + W
Sbjct: 333 CVRLCPHGALAAEIEGEDFVLAFTPQLCTACGLCTARCPKSALRLAASPTAKRW 386



 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C +VCP   F  G      HPD CI+CG+C   CP  A++
Sbjct: 81  CEDVCPAGAFRWG----VPHPDLCIECGLCTAVCPAAAVE 116


>gi|222823395|ref|YP_002574969.1| formate dehydrogenase, beta (iron-sulfur) subunit [Campylobacter
           lari RM2100]
 gi|222538617|gb|ACM63718.1| formate dehydrogenase, beta (iron-sulfur) subunit [Campylobacter
           lari RM2100]
          Length = 189

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +  T  C  C    C +VCPV CFY   + + +H  + CI CG C   CP  A
Sbjct: 50  FSTTLACQHCTDAPCEQVCPVKCFYIRADGIVLHDKKTCIGCGYCLYACPFGA 102


>gi|308272512|emb|CBX29116.1| hypothetical protein N47_J00970 [uncultured Desulfobacterium sp.]
          Length = 822

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           C  +CP +     +N+   I  D C  CG+C   CP +AI   +E G     KI SE
Sbjct: 647 CYRICPHNAVTIRDNYQPVISTDACFGCGICVSHCPANAISVISESGSVSSGKIASE 703


>gi|198283943|ref|YP_002220264.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667094|ref|YP_002426577.1| sulfur reductase, iron-sulfur binding subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248464|gb|ACH84057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519307|gb|ACK79893.1| sulfur reductase, iron-sulfur binding subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 207

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 20/104 (19%)

Query: 11  LCKHTD---CVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP----DTEPG 62
           LC H D   CV VCP    + E    + ++PD C+ C  C   CP DA  P    D + G
Sbjct: 60  LCNHCDNPPCVSVCPTGATWKEANGIVRVNPDICMGCQACAMACPYDARYPADSNDIDKG 119

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
           L  + K               K ++PS  K D    + ++   P
Sbjct: 120 LGYYGK------------DFLKRTVPSIDKCDFCYDRLQQGLEP 151


>gi|119719130|ref|YP_919625.1| putative ATPase RIL [Thermofilum pendens Hrk 5]
 gi|119524250|gb|ABL77622.1| ABC transporter related [Thermofilum pendens Hrk 5]
          Length = 601

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 11/56 (19%)

Query: 11 LCK----HTDCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
          LC+    + +CV+ CP++     C +  E EN   I  + C+ CG+C  +CP  AI
Sbjct: 10 LCRPSKCNQECVKFCPINRSGSKCVWIDEVENKARISEELCVGCGICVKKCPFSAI 65


>gi|28199470|ref|NP_779784.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|182682201|ref|YP_001830361.1| ferredoxin [Xylella fastidiosa M23]
 gi|28057585|gb|AAO29433.1| ferredoxin II [Xylella fastidiosa Temecula1]
 gi|182632311|gb|ACB93087.1| electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa M23]
 gi|307578471|gb|ADN62440.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 139

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 81  VAWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIE 135


>gi|297570515|ref|YP_003691859.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926430|gb|ADH87240.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 682

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C+ C   +CV +CP    Y+    E    I+ + C+ CG+C   CP  AIK
Sbjct: 488 VTADRCVKC--LNCVRLCP----YQAPRIEQVALINRERCLACGICHGACPTGAIK 537


>gi|149191926|ref|ZP_01870158.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
 gi|148834231|gb|EDL51236.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
          Length = 553

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           T+ C LC    CV VCP    +   +  A+     +CI CG+CE  CP  A+
Sbjct: 417 TDKCTLC--MACVAVCPTKALHNDGDRPALDFIEQDCIQCGMCEKACPESAL 466


>gi|108799547|ref|YP_639744.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119868660|ref|YP_938612.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. KMS]
 gi|108769966|gb|ABG08688.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119694749|gb|ABL91822.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. KMS]
          Length = 135

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          V T  C+ C    CV+VCP D F  GE+ + +     +C  C +CE  CPVDA+
Sbjct: 5  VHTAACVACDV--CVKVCPTDVFERGEDGVPVIARQSDCQTCFMCEAYCPVDAL 56


>gi|51247051|ref|YP_066934.1| related to F420H2-dehydrogenase, beta subunit [Desulfotalea
           psychrophila LSv54]
 gi|50878088|emb|CAG37944.1| related to F420H2-dehydrogenase, beta subunit [Desulfotalea
           psychrophila LSv54]
          Length = 443

 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
           E+C  C    C+ +CP  C     + E FL    DE  C +CG+CE  CPV  I P  + 
Sbjct: 63  EDCCGCHA--CLSICPAKCIQMLPDTEGFLYPMVDESLCPECGLCESVCPV--INPPRQE 118

Query: 62  G 62
           G
Sbjct: 119 G 119


>gi|150389144|ref|YP_001319193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149949006|gb|ABR47534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 358

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+E+CPV+   + E  + I  + C  CG+C   CP  A+
Sbjct: 36 CIEICPVEAIKQKETIIVIDKNSCNGCGICNVVCPSQAL 74


>gi|307611754|emb|CBX01462.1| hypothetical protein LPW_31501 [Legionella pneumophila 130b]
          Length = 204

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        + AI   EC  CG+C   CPVD I+
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIE 130


>gi|300114500|ref|YP_003761075.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii
           C-113]
 gi|299540437|gb|ADJ28754.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113]
          Length = 180

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCIALQKTEDEQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  + PN+  +KE L
Sbjct: 116 LTPDFEMG---------EY--ERPNLVYEKEDL 137


>gi|254449088|ref|ZP_05062540.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
          HTCC5015]
 gi|198261280|gb|EDY85573.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
          HTCC5015]
          Length = 93

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC--GVCEPE----CPVDA 54
          M   +T+ CI C    C  VCP    Y+GE    I PD C +C     EP+    CPVD 
Sbjct: 1  MALKITDECINCDV--CEPVCPNQAIYQGEEIFEIDPDLCTECVGHYGEPQCVEICPVDC 58

Query: 55 I-----KPDTEPGLELWLKINSEYATQWPNITTKK 84
          I     KP+TE  L L  +   E     P  +T+ 
Sbjct: 59 IPKDENKPETEAELMLKYERLIELGQTTPTQSTES 93


>gi|88601919|ref|YP_502097.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88187381|gb|ABD40378.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 425

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 20/80 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-------HP-----------DECIDCG 44
           YV   +C  C   DCVEVCPV+ +   +  + +       HP           + CIDCG
Sbjct: 98  YVRAADCTGCG--DCVEVCPVEVYNRFDAGIGVRKAIYKAHPQVVPNVVIRDKEHCIDCG 155

Query: 45  VCEPECPVDAIKPDTEPGLE 64
           +C   C   A+  D+E   E
Sbjct: 156 LCYDICGKQAVLRDSEDAEE 175


>gi|330949992|gb|EGH50252.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae Cit 7]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGASKLMHTVIIDECTGCDLCVAPCPVDCIE 137


>gi|317493923|ref|ZP_07952340.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918250|gb|EFV39592.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 185

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E CI C    C   CP +         EG    ++H   CI C  CE  CP  AIK   E
Sbjct: 38  EQCIACG--ACTAACPANALTMETNAREGTRTWSLHLGRCIFCARCEEVCPTAAIKLTPE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  FELAVWNK 103


>gi|238059197|ref|ZP_04603906.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
 gi|237881008|gb|EEP69836.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
          Length = 294

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 112 MMSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCIPACPYGVI 164


>gi|159043786|ref|YP_001532580.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911546|gb|ABV92979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 248

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREMDAAAGV 138


>gi|114770214|ref|ZP_01447752.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114549051|gb|EAU51934.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 248

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGARELDQAAGV 138


>gi|90417027|ref|ZP_01224956.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
 gi|90331374|gb|EAS46618.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
          Length = 209

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 114 VAYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIADECTGCDLCVEPCPVDCI 167


>gi|11095245|gb|AAG29808.1|AF249899_1 carbon monoxide dehydrogenase subunit CooF [Carboxydothermus
           hydrogenoformans]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+
Sbjct: 95  ITIEQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIR 148


>gi|54295706|ref|YP_128121.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
 gi|53755538|emb|CAH17037.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
          Length = 204

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        + AI   EC  CG+C   CPVD I+
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIE 130


>gi|322835428|ref|YP_004215454.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
 gi|321170629|gb|ADW76327.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
          Length = 206

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  CK   C + CP    ++  G+  + ++ D+C+ CG C   CP  A + +T
Sbjct: 71  AYTLSISCNHCKDPVCTKNCPTTAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQLNT 130

Query: 60  EPG 62
           + G
Sbjct: 131 QTG 133


>gi|226324119|ref|ZP_03799637.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
 gi|225207668|gb|EEG90022.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
          Length = 482

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I   +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEPGHYRSHIDASKCKECGQCAKACPYNAIAHLKRP 151


>gi|148361193|ref|YP_001252400.1| electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|296108529|ref|YP_003620230.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282966|gb|ABQ57054.1| Electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|295650431|gb|ADG26278.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 204

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        + AI   EC  CG+C   CPVD I+
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIE 130


>gi|145495946|ref|XP_001433965.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401086|emb|CAK66568.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3119

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 31/81 (38%)

Query: 5   VTENCILCKHTDCVE-----------------VCPVDCFYEGENFLAIHPD--------- 38
           V  NC  C    CVE                 +CP DC ++G  F  +  D         
Sbjct: 644 VNSNCDSCDQDKCVECSLGYALYQNECYKCPVLCPNDCMFDGSKFGCLKCDLGYYLDKVN 703

Query: 39  -ECIDCG----VCEPECPVDA 54
            EC+ CG    +CEP  P+D 
Sbjct: 704 NECLQCGANCIICEPGIPMDG 724


>gi|91773344|ref|YP_566036.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91712359|gb|ABE52286.1| conserved methanogen protein with ferredoxin domains
           [Methanococcoides burtonii DSM 6242]
          Length = 540

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           H  ECI CG CE ECP DAIK     G EL+   NSE
Sbjct: 477 HAPECIRCGQCEVECPEDAIKIIERDG-ELYANYNSE 512


>gi|193083887|gb|ACF09566.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-72-G3]
          Length = 490

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  +CP    +  E+  +    D CI C  C   CP DA+  D   G
Sbjct: 78  CNHCEDAPCTTICPTTALFTREDGIVDFDDDRCIGCKSCMQACPYDALYIDPNKG 132


>gi|114320439|ref|YP_742122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226833|gb|ABI56632.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 566

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V T+ C LC    C +VCP     +    + +    D C+ CG+C+  CP +A+
Sbjct: 425 VNTDACTLC--MACAQVCPSSALTDNPESVQLRFIEDNCVQCGLCQTACPEEAV 476


>gi|167038468|ref|YP_001666046.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116862|ref|YP_004187021.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857302|gb|ABY95710.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929953|gb|ADV80638.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 372

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV+      +   I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVNAISLVNSSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK  +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKGKI 269


>gi|330937551|gb|EGH41492.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGASKLMHTVIIDECTGCDLCVAPCPVDCIE 137


>gi|332289789|ref|YP_004420641.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
 gi|330432685|gb|AEC17744.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
          Length = 202

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD- 58
           + ++  E CI C  T C++ CPVD        L  + PD C  C +C   CP D I  + 
Sbjct: 111 VAFIHEEMCIGC--TKCIQACPVDAIIGANKALHTVIPDLCTGCELCVAPCPTDCITMEK 168

Query: 59  TEPGLELW 66
            +P L+ W
Sbjct: 169 VKPSLDSW 176


>gi|327401132|ref|YP_004341971.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316640|gb|AEA47256.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 184

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C++VCP+D  Y+  +  + ++ D+CI CG C   CP  A
Sbjct: 55  CMHCSDPACLKVCPMDAIYKRPDGIVLVNKDKCIGCGYCSYACPFGA 101


>gi|283787036|ref|YP_003366901.1| anaerobic reductase component [Citrobacter rodentium ICC168]
 gi|282950490|emb|CBG90155.1| putative anaerobic reductase component [Citrobacter rodentium
           ICC168]
          Length = 209

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + D
Sbjct: 70  FAYTMSISCNHCADPICTKNCPTTAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMD 129

Query: 59  TEPG 62
           T+ G
Sbjct: 130 TQAG 133


>gi|117925397|ref|YP_866014.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Magnetococcus sp. MC-1]
 gi|117609153|gb|ABK44608.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 504

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 35  IHPDECIDCGVCEPECPVD 53
           + PD+CI CG+CE +CPVD
Sbjct: 460 VEPDQCIGCGICENQCPVD 478


>gi|117617793|ref|YP_857568.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559200|gb|ABK36148.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 576

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +      G NF+     +CI CG+CE  CP  AI
Sbjct: 443 DCTLC--MGCVAVCPSRALHAVGHAPGLNFIE---QDCIQCGMCEKACPEQAI 490


>gi|77164629|ref|YP_343154.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|254433116|ref|ZP_05046624.1| NADH-quinone oxidoreductase, chain I subfamily, putative
           [Nitrosococcus oceani AFC27]
 gi|110287763|sp|Q3JC22|NUOI1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|76882943|gb|ABA57624.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|207089449|gb|EDZ66720.1| NADH-quinone oxidoreductase, chain I subfamily, putative
           [Nitrosococcus oceani AFC27]
          Length = 180

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCIALQKTEDEQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  + PN+  +KE L
Sbjct: 116 LTPDFEMG---------EY--ERPNLVYEKEDL 137


>gi|86140247|ref|ZP_01058808.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823050|gb|EAQ43264.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 657

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++C LC    CV +CP     +  +   L    + C+ CG+C   CP DAI    EP L 
Sbjct: 507 DSCTLC--LSCVSLCPSGALGDNPDLPQLRFQEEACLQCGICANTCPEDAIS--FEPRLN 562

Query: 65  L 65
           L
Sbjct: 563 L 563



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 10  ILCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +LC H+         C++ CP        + ++I P  C  CG C   CP  AI  D
Sbjct: 274 LLCAHSRASQSGCSKCLDHCPTSAISSAGDHVSIDPMICAGCGACAALCPSGAITYD 330


>gi|283853706|ref|ZP_06370936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570916|gb|EFC18946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 378

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C   +CV VCPV      +   AI    CI CG C   CP  A+  D    +
Sbjct: 199 VDAKKCIGCG--ECVAVCPVGAATMADRKAAIDKSSCIGCGECLTVCPKKAMSIDWHTEI 256

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 257 VPFMERMVEYA 267


>gi|73668816|ref|YP_304831.1| formylmethanofuran dehydrogenase subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|1124960|emb|CAA63629.1| molybdenum formylmethanofuran dehydrogenase subunit fmdF
           [Methanosarcina barkeri]
 gi|72395978|gb|AAZ70251.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|1587237|prf||2206350E formylmethanofuran dehydrogenase
          Length = 346

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query: 14  HTDCVEVCPVDCFYE-----GENFLAI--HPDECIDCGVCEPECPVDAI 55
           HT CVEVCP +  +      GE    I   PD CI CG C   CPVDAI
Sbjct: 185 HT-CVEVCPANAIFNKKAKPGERVEKITHRPDACIYCGACAVACPVDAI 232


>gi|219667265|ref|YP_002457700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537525|gb|ACL19264.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CVEVCPV   Y+ E+  + +   +CI CG C   CP +A
Sbjct: 64  CNHCENAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYCVASCPYNA 110


>gi|325479615|gb|EGC82707.1| 4Fe-4S binding domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 509

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CV VCP +          I  D+CI CG C   CP +AI     P
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVSACPYNAINHQKRP 171


>gi|296109959|ref|YP_003616908.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434773|gb|ADG13944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 365

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ E+CI C+   C +VC        +      I PD+CI CG+CE ECPVD IK
Sbjct: 267 VLEEDCIGCRA--CYKVCKFGAITISKKTKLPYILPDKCIVCGLCERECPVDTIK 319


>gi|240015030|ref|ZP_04721943.1| putative ferredoxin [Neisseria gonorrhoeae DGI18]
 gi|240081619|ref|ZP_04726162.1| putative ferredoxin [Neisseria gonorrhoeae FA19]
 gi|240113900|ref|ZP_04728390.1| putative ferredoxin [Neisseria gonorrhoeae MS11]
 gi|240116632|ref|ZP_04730694.1| putative ferredoxin [Neisseria gonorrhoeae PID18]
 gi|240118855|ref|ZP_04732917.1| putative ferredoxin [Neisseria gonorrhoeae PID1]
 gi|240122098|ref|ZP_04735060.1| putative ferredoxin [Neisseria gonorrhoeae PID24-1]
 gi|240124392|ref|ZP_04737348.1| putative ferredoxin [Neisseria gonorrhoeae PID332]
 gi|240124736|ref|ZP_04737622.1| putative ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|240129069|ref|ZP_04741730.1| putative ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|254494652|ref|ZP_05107823.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|260439607|ref|ZP_05793423.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|268597712|ref|ZP_06131879.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268599961|ref|ZP_06134128.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602297|ref|ZP_06136464.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604560|ref|ZP_06138727.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683016|ref|ZP_06149878.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683315|ref|ZP_06150177.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687445|ref|ZP_06154307.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042849|ref|ZP_06568590.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513692|gb|EEH63037.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|268551500|gb|EEZ46519.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584092|gb|EEZ48768.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586428|gb|EEZ51104.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588691|gb|EEZ53367.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623300|gb|EEZ55700.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623599|gb|EEZ55999.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627729|gb|EEZ60129.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291013283|gb|EFE05249.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 279

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVITDECTGCGLCVAPCPVDCI 124


>gi|154150339|ref|YP_001403957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998891|gb|ABS55314.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 368

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 26/58 (44%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C EVCP            I  D CI C  C   CPV AI+ D E  + L+ +   EYA
Sbjct: 201 CTEVCPKSAITLRNKKSVIDKDLCIGCFECMTVCPVHAIEVDWETEIPLFTERMVEYA 258


>gi|56696676|ref|YP_167037.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678413|gb|AAV95079.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 649

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI
Sbjct: 496 VNTDACTLC--LSCVSLCPSGALIDNPDLPQLNFQEDACLQCGICRTICPEQAI 547



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H+        +C+++CP        + +AI P  C  CG C   CP  AI
Sbjct: 267 LCAHSRAGQRGCSNCLDICPTGAITSAGDHVAIDPMVCAGCGACAALCPSTAI 319


>gi|310780590|ref|YP_003968921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309749913|gb|ADO84573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 59

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y + E+ CI C    C  VCPV+C  E E     I    CIDCG C   CPVD I P
Sbjct: 1  MSYRINEDECIACGA--CEPVCPVECISEVEGGKRRIDEAVCIDCGACAGVCPVDCIAP 57


>gi|153853057|ref|ZP_01994466.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
 gi|149753843|gb|EDM63774.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
          Length = 503

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 31/136 (22%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E   A                 ++PD+C+ CG
Sbjct: 147 SYIDQEKCIKC--GKCKSVCPYDAISKKERPCAKACGVNAIENDKVGRAYVNPDKCVSCG 204

Query: 45  VCEPECPVDAIKPDTE---------PGLELWLKINSEYATQWP-NITTKKESLPSAAKMD 94
           +C   CP  AI   ++          G ++  +I   +  Q+  NI  +  +L +A +  
Sbjct: 205 MCMVNCPFGAISDKSQIFQLARALSEGEQIIAEIAPAFTGQFGDNINAR--NLKAALEEL 262

Query: 95  GVKQKYEKYFSPNPGG 110
           G  Q YE     + G 
Sbjct: 263 GFSQVYEVALGADIGA 278



 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKGAISMVNGKSYIDQEKCIKCGKCKSVCPYDAISKKERP 175


>gi|332295972|ref|YP_004437895.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179075|gb|AEE14764.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 259

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
            C  C    CV+VCP    ++ EN  +A   ++CI CG C   CP
Sbjct: 72  QCFHCGDPACVKVCPSGALFQAENGIVAFDENKCIACGYCHSACP 116


>gi|331270137|ref|YP_004396629.1| transcriptional regulator [Clostridium botulinum BKT015925]
 gi|329126687|gb|AEB76632.1| transcriptional regulator [Clostridium botulinum BKT015925]
          Length = 629

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + Y + ENC+ C    C+  CP+       F +G+N + ++ D+CI CG C   C  +A
Sbjct: 6  LIYTIEENCVGCNQ--CIRYCPIFDANTAYFSKGQNKVKVNIDKCIHCGKCIDVCEHEA 62


>gi|260597862|ref|YP_003210433.1| anaerobic dimethyl sulfoxide reductase subunit B [Cronobacter
           turicensis z3032]
 gi|260217039|emb|CBA30749.1| Anaerobic dimethyl sulfoxide reductase chain B [Cronobacter
           turicensis z3032]
          Length = 209

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C    C   CP    +  EG+  + ++ D+C+ CG C   CP  A + +
Sbjct: 70  FAYTLSISCNHCADPICTRNCPTTAMHKREGDGIVRVNTDKCVGCGYCAWSCPYGAPQRN 129

Query: 59  TEPG 62
           T+ G
Sbjct: 130 TQTG 133


>gi|159905555|ref|YP_001549217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887048|gb|ABX01985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 138

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--------- 58
            C+ C+   C+  CP D   + ++ + I P++CI C +C   CPV AI  D         
Sbjct: 34  RCMHCEDAPCLNACPEDAIKKIDDKVVIEPEKCIGCALCAEVCPVGAIVIDKCKKVAVKC 93

Query: 59  ---TEPGLELWLKINSEYATQW--PNITTKKESLPSAAK 92
               E G E+ L++    A  +    I  K+  L S  K
Sbjct: 94  DGCVERGSEICLEVCPTKALDYYENTIENKRAELVSKLK 132


>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
 gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
          Length = 644

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +NCI C    C +VCPVDC    ++ +++  I    C  CG C   CPV+AI
Sbjct: 220 IMDNCIGCDK--CTKVCPVDCIVGDFKEQHY--IDYTRCTHCGACLSTCPVNAI 269


>gi|89893344|ref|YP_516831.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219666616|ref|YP_002457051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332792|dbj|BAE82387.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219536876|gb|ACL18615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 189

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVD 53
           ++  C  C++ +C+ VCPV  + + E+ + IH  E CI C +C   CP D
Sbjct: 55  ISVACNHCQNPECLRVCPVKAYTKREDGIVIHDQERCIGCKLCTMACPYD 104


>gi|325288996|ref|YP_004265177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964397|gb|ADY55176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++ C+ C    C EVCPV         EG   + +  + C+ CGVC   CP +A++
Sbjct: 290 ISQECVGCGK--CAEVCPVLAISRPDNKEGRTAVQVDHEVCLGCGVCVRSCPKNAVE 344


>gi|293401032|ref|ZP_06645177.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306058|gb|EFE47302.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 504

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 25/58 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT+ C  C    C EVCP D          I  D+CI CG C   CP  AI     P
Sbjct: 115 VVTDTCQGCLAHPCKEVCPKDAISIINGKSVIDQDKCIKCGRCMDVCPYGAINKLERP 172


>gi|119355969|ref|YP_910613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119353318|gb|ABL64189.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 517

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C    CV +CPV+   + E+  +      CI C  C   CP +A+  D E
Sbjct: 51  YFTVLRCNHCAEPPCVAICPVEALQKREDGIVDFDGRRCIGCKACAQACPYNALYIDPE 109


>gi|242241404|ref|YP_002989585.1| oxidoreductase Fe-S binding subunit [Dickeya dadantii Ech703]
 gi|242133461|gb|ACS87763.1| glutamate synthase, small subunit [Dickeya dadantii Ech703]
          Length = 671

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  VCP          + +  ++CI C  C   CP  AI  +T+ G
Sbjct: 56  CRHCEDAPCASVCPTQALVRKNESIQLIQEKCIGCKTCVLACPFGAISVETQQG 109


>gi|29348365|ref|NP_811868.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|253569265|ref|ZP_04846675.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
          1_1_6]
 gi|29340269|gb|AAO78062.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|251841284|gb|EES69365.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
          1_1_6]
          Length = 299

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + + CI C    C+ VC  +  +   N L+IH + C DCG C   C   A+
Sbjct: 50 IEDKCIHC--FSCITVCEYEVLFIDSNRLSIHRERCTDCGKCTERCTSGAL 98


>gi|21242137|ref|NP_641719.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107549|gb|AAM36255.1| ferredoxin II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 168

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 109 VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 163


>gi|86139798|ref|ZP_01058364.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823427|gb|EAQ43636.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 268

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 86  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEGV 144


>gi|283797938|ref|ZP_06347091.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291074405|gb|EFE11769.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091868|emb|CBK77975.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Clostridium cf. saccharolyticum K10]
          Length = 209

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ CI CK   C   CP  C    +  +AI  + C+ CG C   CP  A++    P
Sbjct: 153 YFVTDKCIGCKL--CYSKCPQKCIDITQKPVAIEQEHCLHCGNCFEICPAGAVERRQSP 209


>gi|268591053|ref|ZP_06125274.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313858|gb|EFE54311.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 205

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +Y ++ +C  C+   CV+VCP    ++ E+ F+ +    CI C  C   CP  A + D+
Sbjct: 59  FSYYLSISCNHCEDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQFDS 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           E CI C    C   CP      G+  + AI P++CI CG C   C  DA+
Sbjct: 544 EKCIGCDM--CARGCPASAISGGKKEIHAIDPEKCIACGSCREACKFDAV 591


>gi|59802094|ref|YP_208806.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|194099985|ref|YP_002003124.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997992|ref|ZP_04717916.1| putative ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|240017478|ref|ZP_04724018.1| putative ferredoxin [Neisseria gonorrhoeae FA6140]
 gi|268593845|ref|ZP_06128012.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|293398133|ref|ZP_06642338.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|59718989|gb|AAW90394.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|193935275|gb|ACF31099.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|268547234|gb|EEZ42652.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|291611396|gb|EFF40466.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|317165435|gb|ADV08976.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 279

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C+  CP D     G+    +  DEC  CG+C   CPVD I
Sbjct: 79  CIGC--TACIRACPADAIMGAGKLMHTVITDECTGCGLCVAPCPVDCI 124


>gi|254466651|ref|ZP_05080062.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium Y4I]
 gi|206687559|gb|EDZ48041.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium Y4I]
          Length = 258

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDHCIGCGLCAWSCPYGARELDLAEGV 138


>gi|148244307|ref|YP_001219001.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326134|dbj|BAF61277.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 181

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + +V  + CI C  T C++ CPVD F      +  +  +EC  C +C P CPVD I
Sbjct: 107 VVFVDEQACIGC--TLCIQACPVDAFVGASKMMTQVIINECTGCDLCIPVCPVDCI 160


>gi|90418463|ref|ZP_01226375.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
 gi|90338135|gb|EAS51786.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
          Length = 680

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C LC    CV  CP D   +  G+  L      C+ CG+C   CP  AI  D
Sbjct: 520 ERCTLC--MACVSACPADALRDTPGKPELRFVEAACVQCGICAATCPETAITLD 571


>gi|323699753|ref|ZP_08111665.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459685|gb|EGB15550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 242

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    CVE CP    Y+ G+  + +  D CI CG C   CP +A
Sbjct: 57  CMHCDKPSCVEACPTGATYKAGDGSVVVDHDRCIGCGGCVAACPYNA 103


>gi|225572042|ref|ZP_03780906.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040477|gb|EEG50723.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
          Length = 501

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+ +CP       + +  I   +CI CG C+  CP DAI   T P
Sbjct: 115 YEVSNICKGCVAHPCMLICPKGAISMVDGYSHIDQTKCIKCGKCKSVCPYDAISHKTRP 173


>gi|218780382|ref|YP_002431700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761766|gb|ACL04232.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 302

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +NC  C+   C   CP++     +    I  D C+ CG+C  +CP D I+
Sbjct: 233 KNCGACRV--CTTACPLEAISNTDGRAEIREDRCMGCGICAAQCPNDKIR 280


>gi|157363272|ref|YP_001470039.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga lettingae TMO]
 gi|157313876|gb|ABV32975.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           lettingae TMO]
          Length = 356

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V +E C+ C+   C   CPV+     + F AI+ D CI CG C   C   A+ P  +   
Sbjct: 189 VASEKCVACRM--CERNCPVNAITVSK-FAAINYDVCIGCGQCIAMCNYGAMVPKWDSSS 245

Query: 64  ELWLKINSEY 73
           E+  K  +EY
Sbjct: 246 EILSKKMAEY 255


>gi|13474673|ref|NP_106242.1| DMSO reductase chain B [Mesorhizobium loti MAFF303099]
 gi|14025428|dbj|BAB52028.1| DMSO reductase chain B [Mesorhizobium loti MAFF303099]
          Length = 244

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+   +  + I  D+CI C +C   CP  A + DT+ G+
Sbjct: 79  RSCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVGV 137


>gi|2127911|pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jannaschii
          Length = 168

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          I+C+H     C EVCPV      + ++ ++ D CI CG+C   CP  AI
Sbjct: 46 IVCQHCASAPCKEVCPVSAIEHKDGYVYLNEDVCIGCGLCALACPFGAI 94


>gi|49082640|gb|AAT50720.1| PA3490 [synthetic construct]
          Length = 189

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 105 VAYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIE 159


>gi|325970932|ref|YP_004247123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
 gi|324026170|gb|ADY12929.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
          Length = 55

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CP     EG+ ++ I  D CIDCG C   CP  AI
Sbjct: 1  MAYKITDACVACGT--CQPECPTGAISEGDIYV-IDADACIDCGTCADVCPTAAI 52


>gi|319787565|ref|YP_004147040.1| electron transport complex, RnfABCDGE type subunit beta
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466077|gb|ADV27809.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 141

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           +  V+  +CI C  T C++ CPVD    G   + +  D  C  C +C P CPVD I
Sbjct: 80  VAVVIEADCIGC--TKCIQACPVDAIIGGAKLMHVVLDPLCTGCELCVPACPVDCI 133


>gi|257460510|ref|ZP_05625611.1| electron transport protein HydN [Campylobacter gracilis RM3268]
 gi|257441841|gb|EEV16983.1| electron transport protein HydN [Campylobacter gracilis RM3268]
          Length = 199

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP        N++ +H + CI C +C   CP  AI  + E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFDNNYIELHEEICIGCKMCTLACPYGAISSNAE 104


>gi|256751333|ref|ZP_05492212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749715|gb|EEU62740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 372

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK  +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKGKI 269


>gi|212633603|ref|YP_002310128.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212555087|gb|ACJ27541.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 214

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+  +  C  C    CV  CPV   ++ ++   +  + D+CI C +C   CP DA + DT
Sbjct: 71  THYTSIGCNHCSEPVCVSTCPVGAMHKEQDTGLVKTNDDKCIGCNMCAQACPYDAPQMDT 130

Query: 60  E 60
           E
Sbjct: 131 E 131


>gi|220929030|ref|YP_002505939.1| electron transfer flavoprotein subunit alpha [Clostridium
          cellulolyticum H10]
 gi|219999358|gb|ACL75959.1| Electron transfer flavoprotein alpha subunit [Clostridium
          cellulolyticum H10]
          Length = 399

 Score = 37.7 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++++ C+ C    C+ VCP +     +N + I  + C  CG+C P+C   AI
Sbjct: 6  ILSDKCVKC--LQCINVCPCNAIKNDKNVVYID-NTCTLCGICIPKCSFSAI 54


>gi|167038788|ref|YP_001661773.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|300913627|ref|ZP_07130944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307723358|ref|YP_003903109.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|166853028|gb|ABY91437.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X514]
 gi|300890312|gb|EFK85457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307580419|gb|ADN53818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X513]
          Length = 372

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK  +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKGKI 269


>gi|291441974|ref|ZP_06581364.1| formate dehydrogenase beta subunit [Streptomyces ghanaensis ATCC
           14672]
 gi|291344869|gb|EFE71825.1| formate dehydrogenase beta subunit [Streptomyces ghanaensis ATCC
           14672]
          Length = 333

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           + ++ C  C H  C++VCP    +  E   + + PD C  CG C   CP   I  +PD
Sbjct: 150 MSSDVCKHCTHAGCLDVCPTGALFRTEFGSVVVQPDICNGCGYCVSGCPYGVIDRRPD 207


>gi|89893274|ref|YP_516761.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219666548|ref|YP_002456983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332722|dbj|BAE82317.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219536808|gb|ACL18547.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 203

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           +T  C  C++  CV+VCPV   Y+ E+  + I+ D CI C  C   CP +A
Sbjct: 61  LTVACQHCENAPCVKVCPVGATYKAEDGRVLINYDRCIGCRYCMAACPYNA 111


>gi|269986447|gb|EEZ92733.1| ABC transporter related protein [Candidatus Parvarchaeum
          acidiphilum ARMAN-4]
          Length = 572

 Score = 37.7 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 17 CVEVCP------VDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
          C EVCP       +  Y  EN   AI    CI CG+C   CP DAI+
Sbjct: 21 CAEVCPRVRQGAKETVYARENGKAAITESLCISCGICVKRCPFDAIR 67


>gi|149193850|ref|ZP_01870948.1| iron-sulfur cluster-binding protein CooF [Caminibacter
           mediatlanticus TB-2]
 gi|149135803|gb|EDM24281.1| iron-sulfur cluster-binding protein CooF [Caminibacter
           mediatlanticus TB-2]
          Length = 172

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C+ C++  CVE CP+D   YEG +++ I+ ++CI C  C   CP  A+     P
Sbjct: 62  QCMQCENAPCVEACPIDIIKYEG-DYVKIYEEDCIGCRSCAIVCPFGAVVMAESP 115


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T CV+ CP D    E +    I  D+CI CG C   CP DAI
Sbjct: 559 YQITDDCQGC--TKCVDECPGDAISGEAKEQHTIDEDDCIKCGSCINVCPFDAI 610


>gi|291435505|ref|ZP_06574895.1| 4Fe-4S ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|291338400|gb|EFE65356.1| 4Fe-4S ferredoxin [Streptomyces ghanaensis ATCC 14672]
          Length = 266

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  +PD
Sbjct: 174 MSSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDQRPD 231


>gi|289577411|ref|YP_003476038.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|289527124|gb|ADD01476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
          Length = 372

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK  +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKGKI 269


>gi|225016098|ref|ZP_03705331.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
 gi|224951095|gb|EEG32304.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
          Length = 490

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+NC  C    C++ CP       +    I   +C +CG C   CP +AI
Sbjct: 103 VTQNCRGCLAKKCIKACPFGAISTSDGHAVIDKKKCRECGKCVAACPYNAI 153


>gi|219851773|ref|YP_002466205.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
 gi|219546032|gb|ACL16482.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
          Length = 288

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           CV +CP        +  ++  D+CI+C +C   CP  +           W+ +   Y   
Sbjct: 174 CVNICPTGAISREGSSYSLDLDKCINCSICTASCPTGS-----------WVAVQKGYIL- 221

Query: 77  WPNITTKKESLPS-AAKMDGVKQKYEKYF 104
           W   T  K  +P  A+++DGV +  E+ +
Sbjct: 222 WIGGTMGK--IPRLASRLDGVIESKERLY 248


>gi|194332908|ref|YP_002014768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194310726|gb|ACF45121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 515

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C+   CV +CPV+   + E+  +      CI C  C   CP  A+  D E
Sbjct: 51  YFTVLRCNHCEDPPCVNICPVEALQKREDGIVDFDKRRCIGCKACGQACPYGALYIDPE 109


>gi|9651771|gb|AAF91263.1|AF230199_5 pyruvate oxidoreductase gamma subunit [Methanococcus maripaludis]
          Length = 85

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + C+ C++  C   CP  C  E +    I  D C  C +CE ECPV AIK + E
Sbjct: 32 DKCVKCEN--CYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKAERE 83


>gi|323704847|ref|ZP_08116424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535773|gb|EGB25547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C  C+   C++ CP D     +    I P++CI CG C   C  DAI P     ++
Sbjct: 191 VGKKCTACQ--TCIKNCPEDAISLVDGKAYIDPEKCIGCGECITMCQYDAINPQWGTDMD 248

Query: 65  LWLKINSEYA 74
            +++  +EYA
Sbjct: 249 EFVERMTEYA 258


>gi|255261730|ref|ZP_05341072.1| 4Fe-4S binding domain protein [Thalassiobium sp. R2A62]
 gi|255104065|gb|EET46739.1| 4Fe-4S binding domain protein [Thalassiobium sp. R2A62]
          Length = 252

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D E G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQEEGV 138


>gi|126435201|ref|YP_001070892.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|126235001|gb|ABN98401.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 135

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          V T  C+ C    CV+VCP D F  GE+ + +     +C  C +CE  CPVDA+
Sbjct: 5  VHTAACVACDV--CVKVCPTDVFERGEDGVPVIARQSDCQTCFMCEAYCPVDAL 56


>gi|114564835|ref|YP_752349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336128|gb|ABI73510.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 220

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y  + +C  C    CV+ CP    ++   +  + +H D CI C  C   CP DA  P 
Sbjct: 76  FSYYTSISCNHCNEPVCVKACPTGAMHKRREDGLVLVHTDLCIGCNSCAEACPYDA--PQ 133

Query: 59  TEPGLELWLKINSEY 73
            +P  ++  K +  Y
Sbjct: 134 LDPQRKVMTKCDGCY 148


>gi|320101426|ref|YP_004177018.1| ABC transporter-like protein [Desulfurococcus mucosus DSM 2162]
 gi|319753778|gb|ADV65536.1| ABC transporter related protein [Desulfurococcus mucosus DSM
          2162]
          Length = 602

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 12/61 (19%)

Query: 3  YVVTENCILCKHTDCVEVCPVD-------CFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
          Y   + C L    +C+  CPV+           G+N ++ I  D CI CG+C  +CP  A
Sbjct: 11 YCKPDKCSL----ECIRFCPVNRGRRKKAIELSGDNKYVVISEDACIGCGICVKKCPFHA 66

Query: 55 I 55
          I
Sbjct: 67 I 67


>gi|299135388|ref|ZP_07028578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589796|gb|EFI50001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 658

 Score = 37.7 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           + C LC    CV VCP     +  +   L    D C+ CG+CE  CP   I+
Sbjct: 503 DGCTLC--LSCVSVCPTGALSDDPDRPMLRFAEDACVQCGLCEATCPEKVIE 552


>gi|295115164|emb|CBL36011.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [butyrate-producing bacterium SM4/1]
          Length = 209

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ CI CK   C   CP  C    +  +AI  + C+ CG C   CP  A++    P
Sbjct: 153 YFVTDKCIGCKL--CYSKCPQKCIDITQKPVAIEQEHCLHCGNCFEICPAGAVERRQSP 209


>gi|121534183|ref|ZP_01666008.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307286|gb|EAX48203.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C   CP    YE + F+ I+   CI C VC   CP  AI
Sbjct: 63  QCRQCEDAPCAHACPTGAIYEEDRFVKINESNCIGCKVCTMVCPFGAI 110


>gi|152989151|ref|YP_001347023.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PA7]
 gi|166991043|sp|A6V1T8|RNFB_PSEA7 RecName: Full=Electron transport complex protein rnfB
 gi|150964309|gb|ABR86334.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 188

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 105 VAYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIE 159


>gi|325929561|ref|ZP_08190675.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
 gi|325540071|gb|EGD11699.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
          Length = 142

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 83  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 137


>gi|295689414|ref|YP_003593107.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caulobacter segnis ATCC 21756]
 gi|295431317|gb|ADG10489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
          segnis ATCC 21756]
          Length = 128

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          VV + C  C   DCV+ CP D    GE   A+  H  +C  C +CE  CP DA+
Sbjct: 5  VVEDRCTGCG--DCVQACPSDVLRVGEGGKAVIAHQVDCQTCLLCELYCPADAL 56


>gi|239933594|ref|ZP_04690547.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces ghanaensis
           ATCC 14672]
          Length = 338

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           + ++ C  C H  C++VCP    +  E   + + PD C  CG C   CP   I  +PD
Sbjct: 155 MSSDVCKHCTHAGCLDVCPTGALFRTEFGSVVVQPDICNGCGYCVSGCPYGVIDRRPD 212


>gi|288549934|ref|ZP_05968681.2| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
 gi|288317249|gb|EFC56187.1| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 5  VTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          VT+ C+  +        C +VCP   F   +  + I P  CI+CG C   CP DAI 
Sbjct: 11 VTQACVRRRFRHASCHACADVCPAQAFSVTDGQVTIDPSRCIECGDCLFVCPTDAIS 67



 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TE CILC    C   CP       +N L +    C  CG CE  CP  AIK
Sbjct: 189 TEKCILCG--ACWRSCPEKAIRFEDNALVMENARCTGCGGCEAVCPSHAIK 237


>gi|242280658|ref|YP_002992787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123552|gb|ACS81248.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 304

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C+E CP    +  +  + I P +C+ CGVC  +C  DA++
Sbjct: 241 QKCIGC--GQCMEYCPFGAMHLRDKRMRIDPKKCMGCGVCTNKCRKDALR 288


>gi|74317757|ref|YP_315497.1| putative tetrathionate reductase subunit B [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057252|gb|AAZ97692.1| putative tetrathionate reductase subunit B [Thiobacillus
           denitrificans ATCC 25259]
          Length = 245

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           TY++   C  C++  CV VCPV   F   +  + +  D C+ C  C   CP DA
Sbjct: 89  TYMLPRLCNHCENPPCVPVCPVGATFKRDDGIVVVDGDRCVGCAYCVQACPYDA 142


>gi|15837149|ref|NP_297837.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9105406|gb|AAF83357.1|AE003902_2 ferredoxin II [Xylella fastidiosa 9a5c]
          Length = 159

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 101 VAWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIE 155


>gi|85059572|ref|YP_455274.1| NADH dehydrogenase subunit I [Sodalis glossinidius str.
           'morsitans']
 gi|110287775|sp|Q2NSK6|NUOI_SODGM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84780092|dbj|BAE74869.1| NADH dehydrogenase I subunit I [Sodalis glossinidius str.
           'morsitans']
          Length = 180

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|332796874|ref|YP_004458374.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1]
 gi|332694609|gb|AEE94076.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1]
          Length = 164

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C  +CP D      Y+G+    I+   C+ CG C   CPVDA+K
Sbjct: 61  CIGC--TLCAMICPADAMKMMTYQGKKLPTINYGRCVFCGFCVDICPVDALK 110


>gi|331015678|gb|EGH95734.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIE 137


>gi|315453072|ref|YP_004073342.1| ferredoxin, 4Fe-4S [Helicobacter felis ATCC 49179]
 gi|315132124|emb|CBY82752.1| ferredoxin, 4Fe-4S [Helicobacter felis ATCC 49179]
          Length = 84

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V++ CI C    C E CP +   E +    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVSQECIACDA--CREECPTEAIDENDPIYNIDPDRCTECIGYSDEPNCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IMPD 62


>gi|116051507|ref|YP_789657.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108854|ref|ZP_07794838.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
 gi|122260647|sp|Q02QX9|RNFB_PSEAB RecName: Full=Electron transport complex protein rnfB
 gi|115586728|gb|ABJ12743.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310881340|gb|EFQ39934.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
          Length = 188

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 105 VAYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIE 159


>gi|258515754|ref|YP_003191976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779459|gb|ACV63353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 369

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + CI C    C  VCP       +N  A I PD CI CG C   CP  AI+ D E  
Sbjct: 190 VNQDKCIGCAQ--CSTVCPEKASTLNDNNKAEISPDSCIGCGECLTTCPEKAIEMDWETE 247

Query: 63  LELWLKINSEYA 74
           +   L+  +EYA
Sbjct: 248 IPALLERMTEYA 259


>gi|254283716|ref|ZP_04958684.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B]
 gi|219679919|gb|EED36268.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B]
          Length = 175

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC    +           F  I+   CI CG+CE  CP +AI+
Sbjct: 53  ERCVACNL--CAVACPVDCIALQQATKEDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQ 110

Query: 57  --PDTE 60
             PD E
Sbjct: 111 LTPDFE 116


>gi|15668439|ref|NP_247237.1| carbon monoxide dehydrogenase iron sulfur subunit CooF2
          [Methanocaldococcus jannaschii DSM 2661]
 gi|37078241|sp|Q57713|FER9_METJA RecName: Full=Uncharacterized ferredoxin MJ0265
 gi|2826268|gb|AAB98252.1| carbon monoxide dehydrogenase, iron sulfur subunit CooF-1 (cooF2)
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 166

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          I+C+H     C EVCPV      + ++ ++ D CI CG+C   CP  AI
Sbjct: 44 IVCQHCASAPCKEVCPVSAIEHKDGYVYLNEDVCIGCGLCALACPFGAI 92


>gi|326389280|ref|ZP_08210848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994643|gb|EGD53067.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 372

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK  +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKGKI 269


>gi|262368735|ref|ZP_06062064.1| electron transport complex protein [Acinetobacter johnsonii SH046]
 gi|262316413|gb|EEY97451.1| electron transport complex protein [Acinetobacter johnsonii SH046]
          Length = 264

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCI 137


>gi|197285065|ref|YP_002150937.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|194682552|emb|CAR42565.1| putative anaerobic dimethyl sulfoxide reductase chain B [Proteus
           mirabilis HI4320]
          Length = 209

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y +T +C  C    CV+ CP    ++  G+  + +   +C+ CG C   CP  A + +
Sbjct: 70  FAYTLTISCNHCNDPICVKNCPTTAMHKRPGDGIVRVDTSKCVGCGYCSWSCPYGAPQMN 129

Query: 59  TEPG 62
           TE G
Sbjct: 130 TETG 133


>gi|187776781|ref|ZP_02993254.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
 gi|187775440|gb|EDU39242.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
          Length = 497

 Score = 37.7 bits (86), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FTVTEACRGCIQHKCMEVCSAKALARINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|284165623|ref|YP_003403902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284015278|gb|ADB61229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 224

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPG 62
            C  C++  CV VCP +    E + F+++H D C+ C  C   CP  A + PD+  G
Sbjct: 91  QCYHCENAPCVSVCPTNALQKEDDGFVSVHEDLCVGCQYCLSGCPFGAPQFPDSNDG 147


>gi|152990158|ref|YP_001355880.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
 gi|151422019|dbj|BAF69523.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
          Length = 84

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C E CP +   EG+    I PD C +C        C   CPVD 
Sbjct: 1  MSLMITDECIACDA--CREECPTEAIEEGDPIYIIDPDRCTECVGFYDEPACIAVCPVDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IVPD 62


>gi|94676609|ref|YP_588818.1| NADH dehydrogenase subunit I [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|110287758|sp|Q1LT96|NUOI_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|94219759|gb|ABF13918.1| NADH-quinone oxidoreductase, chain I [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 180

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         EG     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCISLQKTESKEGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTE 60
             PD E
Sbjct: 116 LTPDFE 121


>gi|45359069|ref|NP_988626.1| pyruvate oxidoreductase (synthase) subunit delta [Methanococcus
          maripaludis S2]
 gi|45047944|emb|CAF31062.1| pyruvate oxidoreductase (synthase) subunit delta [Methanococcus
          maripaludis S2]
          Length = 85

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + C+ C++  C   CP  C  E +    I  D C  C +CE ECPV AIK + E
Sbjct: 32 DKCVKCEN--CYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKAERE 83


>gi|167392731|ref|XP_001740273.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895662|gb|EDR23298.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 504

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C   CP  C   GE+  A I+ ++CI CG C   CP  AI
Sbjct: 113 YFVTQSCEGCTSRPCSVNCPKKCISFGEDGRALINQNDCIKCGRCFKFCPYGAI 166


>gi|46579100|ref|YP_009908.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448513|gb|AAS95167.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 162

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C + CP   + + +   + +    CI CG C   CPVDA+  D E GL
Sbjct: 46  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 101


>gi|313672549|ref|YP_004050660.1| electron transport complex, rnfabcdge type, b subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939305|gb|ADR18497.1| electron transport complex, RnfABCDGE type, B subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 260

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CPVD      N   I P++CI+CG C+  CP  AI
Sbjct: 213 CIACKL--CQKNCPVDAITVENNLAYIDPNKCINCGKCKEVCPTKAI 257


>gi|291530236|emb|CBK95821.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum 70/3]
          Length = 560

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSEYA 74
           C+  CPV      +    I  DECI CG+C   CP +A  I+ D     EL +     Y 
Sbjct: 17  CIRHCPVKSIRFSDGQANIVEDECILCGMCFVACPQNAKQIRNDVGKAKELIVSGTPVYV 76

Query: 75  TQWPNITTKKESLPSAAKMDGVKQ 98
           +  P+     + +   A  D +K+
Sbjct: 77  SIAPSFVANYDGIGITALNDALKK 100


>gi|21230794|ref|NP_636711.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769208|ref|YP_243970.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992355|ref|YP_001904365.1| ferredoxin [Xanthomonas campestris pv. campestris str. B100]
 gi|21112394|gb|AAM40635.1| ferredoxin II [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574540|gb|AAY49950.1| ferredoxin II [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734115|emb|CAP52321.1| Putative ferredoxin [Xanthomonas campestris pv. campestris]
          Length = 139

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 80  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCVPACPVDCIE 134


>gi|319785595|ref|YP_004145071.1| DMSO reductase chain B [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171483|gb|ADV15021.1| DMSO reductase chain B [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 244

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+   +  + I  D+CI C +C   CP  A + DT+ G+
Sbjct: 79  RSCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVGV 137


>gi|294635459|ref|ZP_06713947.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291091192|gb|EFE23753.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 218

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           + C  C    C++VCP    +  EN  + ++P +CI CG C   CP  A
Sbjct: 88  QACQHCDQAPCIDVCPTGASWRDENGIVRVNPADCIGCGYCVSACPYQA 136


>gi|257066859|ref|YP_003153115.1| hydrogenase large subunit domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798739|gb|ACV29394.1| hydrogenase large subunit domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 508

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CV VCP +          I  D+CI CG C   CP  AI     P
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVAACPYQAINHQKRP 171


>gi|225575176|ref|ZP_03783786.1| hypothetical protein RUMHYD_03265 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037609|gb|EEG47855.1| hypothetical protein RUMHYD_03265 [Blautia hydrogenotrophica DSM
           10507]
          Length = 317

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  CK    ++ CPV+     +    I PD C +CG C   C  DA++ + +PG +++
Sbjct: 172 DECNGCKKCSVIDACPVNAVKMVDGVAEIDPDICTNCGRCIGHCHFDALE-EGKPGFKIY 230

Query: 67  L 67
           +
Sbjct: 231 I 231


>gi|53804530|ref|YP_113813.1| NADH dehydrogenase subunit I [Methylococcus capsulatus str. Bath]
 gi|81682188|sp|Q608Y4|NUOI_METCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|53758291|gb|AAU92582.1| NADH dehydrogenase I, I subunit [Methylococcus capsulatus str.
           Bath]
          Length = 171

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAVCPVDCIALQKTEDVDGRWYPEFFRINFSRCILCGLCEEACPTYAIQ 106

Query: 57  --PDTE 60
             PD E
Sbjct: 107 LTPDFE 112


>gi|15598686|ref|NP_252180.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAO1]
 gi|107103020|ref|ZP_01366938.1| hypothetical protein PaerPA_01004089 [Pseudomonas aeruginosa PACS2]
 gi|218890265|ref|YP_002439129.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           LESB58]
 gi|254242171|ref|ZP_04935493.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|17369007|sp|Q9HYB9|RNFB_PSEAE RecName: Full=Electron transport complex protein rnfB
 gi|226735423|sp|B7UWJ3|RNFB_PSEA8 RecName: Full=Electron transport complex protein rnfB
 gi|9949636|gb|AAG06878.1|AE004770_3 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|126195549|gb|EAZ59612.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|218770488|emb|CAW26253.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 188

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 105 VAYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIE 159


>gi|300712349|ref|YP_003738163.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
 gi|299126032|gb|ADJ16371.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
          Length = 712

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C L     C  +CP D     E  L  + ++C++CG+CE  CP  AI
Sbjct: 571 VSDACTLTP--TCSNLCPTDAIRRTEWGLEFNHEKCVNCGLCEEGCPESAI 619


>gi|163740485|ref|ZP_02147879.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386343|gb|EDQ10718.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 264

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 86  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEGV 144


>gi|50123378|ref|YP_052545.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613904|emb|CAG77357.1| anaerobically expressed oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 674

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP     + +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCASVCPTQALIKKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNP 108


>gi|308049947|ref|YP_003913513.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632137|gb|ADN76439.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + Y+    CI C  T C++ CPVD     G+    +  D+C  C +C   CPVD I+
Sbjct: 106 VAYIREAECIGC--TKCIQACPVDAIIGTGKQMHTVLADQCTGCDLCVEPCPVDCIE 160


>gi|295697039|ref|YP_003590277.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
 gi|295412641|gb|ADG07133.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
          Length = 519

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA--IKPD 58
           C  C+   CV +CPV   ++  + +     E CI C  C   CP DA  I PD
Sbjct: 70  CNQCEDPPCVAICPVSAMFQRPDGIVDFDREVCIGCKACMAACPYDAIYIHPD 122


>gi|295394365|ref|ZP_06804589.1| formate dehydrogenase-N, beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972717|gb|EFG48568.1| formate dehydrogenase-N, beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 356

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK----------P 57
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+          P
Sbjct: 161 CKHCTHAGCLDVCPTGALFRTEFGTVVVQNDVCNGCGTCVAGCPFGVIERRDDGTVNTNP 220

Query: 58  DTEP 61
           D EP
Sbjct: 221 DREP 224


>gi|171185318|ref|YP_001794237.1| thiamine pyrophosphate binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934530|gb|ACB39791.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 9   CILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C LC     C  + P      G+    I P  C  CG+C   CP  AIK + E  LE+W
Sbjct: 534 CSLCYGLLRCSAIAP-----RGDRKAYIDPALCTGCGMCAEVCPTGAIKGERERWLEIW 587


>gi|28871290|ref|NP_793909.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970874|ref|ZP_03398997.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301383775|ref|ZP_07232193.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059917|ref|ZP_07251458.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130516|ref|ZP_07256506.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854540|gb|AAO57604.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924397|gb|EEB57969.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 291

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIE 137


>gi|71735100|ref|YP_273634.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555653|gb|AAZ34864.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 280

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 73  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 127


>gi|51245620|ref|YP_065504.1| formate dehydrogenase, beta subunit (iron-sulfur subunit)
           [Desulfotalea psychrophila LSv54]
 gi|50876657|emb|CAG36497.1| probable formate dehydrogenase, beta subunit (iron-sulfur subunit)
           [Desulfotalea psychrophila LSv54]
          Length = 197

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           ++ +C+ C    C+ VCPVD  Y+ ++ + +    +CI CG C   CP  A
Sbjct: 51  ISISCMHCADAPCIAVCPVDAIYQRDDGIVLADKKKCIGCGYCFMACPFGA 101


>gi|298528790|ref|ZP_07016194.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512442|gb|EFI36344.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 374

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV+  CI C    C   CPV       +   +  D+CI+C  C+  CP DAI+
Sbjct: 308 VVSSRCISCG--ICAGHCPVGAMSMSSSGPVLDRDKCINCYCCQEMCPEDAIR 358


>gi|126666311|ref|ZP_01737290.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17]
 gi|126629112|gb|EAZ99730.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17]
          Length = 179

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    +GE         F  I+   CI CG+CE  CP  AI+
Sbjct: 57  ERCVACNL--CAVACPVACISLEKGEREDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQ 114

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 115 LTPDFEMG 122


>gi|260461936|ref|ZP_05810181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032183|gb|EEW33449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 244

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+   +  + I  D+CI C +C   CP  A + DT+ G+
Sbjct: 79  RSCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVGV 137


>gi|256810831|ref|YP_003128200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256794031|gb|ACV24700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 164

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          I+C+H     C EVCPV      + ++ ++ + CI CG+C   CP  AI  D
Sbjct: 42 IICQHCASAPCKEVCPVSAIEHKDGYVYLNEEVCIGCGLCALACPFGAITLD 93


>gi|20093899|ref|NP_613746.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886840|gb|AAM01676.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 379

 Score = 37.7 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  + CI C+   C +VCPVD     E      I PD C+ CG+C   CP  A+
Sbjct: 236 YIQPDMCIGCR--ICYDVCPVDAIRIEEITRMPVIMPDLCVRCGLCADACPTSAV 288



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C   +CV  CP +     ++            I PD CI C +C   CPVDAI+
Sbjct: 202 ERCLGC--YNCVAYCPTEALKRPDHRPRPKCTDEVFYIQPDMCIGCRICYDVCPVDAIR 258


>gi|145223743|ref|YP_001134421.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium gilvum PYR-GCK]
 gi|315444069|ref|YP_004076948.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|145216229|gb|ABP45633.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium gilvum PYR-GCK]
 gi|315262372|gb|ADT99113.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 135

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          V T  CI C    C+ VCP D F  G++ + +     +C  C +CE  CPVDA+
Sbjct: 5  VSTSACIACDV--CITVCPTDVFDRGDDGIPVIARQSDCQTCFMCEAYCPVDAL 56


>gi|294626911|ref|ZP_06705502.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665011|ref|ZP_06730320.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598771|gb|EFF42917.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605230|gb|EFF48572.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 142

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 83  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 137


>gi|158321169|ref|YP_001513676.1| hypothetical protein Clos_2144 [Alkaliphilus oremlandii OhILAs]
 gi|158141368|gb|ABW19680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 220

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECP 51
           E C  C++  C   CPVD     E + A   DE  CI CGVC+  CP
Sbjct: 123 ETCKQCENPKCASACPVDAISLNERWGAWMVDESKCIGCGVCKRACP 169


>gi|254975776|ref|ZP_05272248.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-66c26]
 gi|255093163|ref|ZP_05322641.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CIP 107932]
 gi|255314905|ref|ZP_05356488.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-76w55]
 gi|255517579|ref|ZP_05385255.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-97b34]
 gi|255650690|ref|ZP_05397592.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-37x79]
 gi|260683777|ref|YP_003215062.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CD196]
 gi|260687437|ref|YP_003218571.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           R20291]
 gi|306520615|ref|ZP_07406962.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-32g58]
 gi|260209940|emb|CBA63916.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CD196]
 gi|260213454|emb|CBE05132.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           R20291]
          Length = 140

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C+  CP +CF + E F+ +    CI C +CE  C   A+
Sbjct: 55  CIHCNEPKCLGACPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGAL 101


>gi|73670092|ref|YP_306107.1| sulfite reductase subunit beta [Methanosarcina barkeri str. Fusaro]
 gi|72397254|gb|AAZ71527.1| sulfite reductase, beta subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 285

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  +V ENC+ CK   C + C V      E+  +I  ++CI CG C   C  DA+K +
Sbjct: 160 MPKIVEENCVGCKL--CEKACKVGAIKVLEDKASIDTEKCILCGACIAACRKDALKAE 215


>gi|78046995|ref|YP_363170.1| ferredoxin [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035425|emb|CAJ23070.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 156

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 97  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 151


>gi|50085926|ref|YP_047436.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter sp. ADP1]
 gi|49531902|emb|CAG69614.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter sp. ADP1]
          Length = 87

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +TE CI C    C  VCP +  Y GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITEECINCDV--CEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|325847091|ref|ZP_08169917.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481063|gb|EGC84108.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 502

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI     P
Sbjct: 115 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNAISHTKRP 171


>gi|313898382|ref|ZP_07831919.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956764|gb|EFR38395.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 504

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T VVT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 113 TVVVTDTCQGCLAHPCKEVCPKDAISMVNGKSYIDQEKCIKCGRCMDVCPYGAINKLERP 172


>gi|309775984|ref|ZP_07670976.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916266|gb|EFP62014.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 504

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T VVT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 113 TVVVTDTCQGCLAHPCKEVCPKDAISMVNGKSYIDQEKCIKCGRCMDVCPYGAINKLERP 172


>gi|325921027|ref|ZP_08182908.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325548476|gb|EGD19449.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 143

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+  T
Sbjct: 84  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIELHT 141


>gi|288961311|ref|YP_003451650.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288913619|dbj|BAI75106.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 23/50 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPVD    G + + +    CI C +C   CP  AI P 
Sbjct: 51  CHQCEDAPCARVCPVDAITFGADAILLDEQTCIGCKMCALACPFGAITPS 100


>gi|163752014|ref|ZP_02159224.1| TtrB [Shewanella benthica KT99]
 gi|161328119|gb|EDP99287.1| TtrB [Shewanella benthica KT99]
          Length = 231

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +T  V   C  C +  CV VCPV   Y+   +  + I  DECI C +C   CP  A + D
Sbjct: 80  VTLAVPNQCNQCDNPACVYVCPVGATYKRKEDGIVVIDHDECIYCQLCVDACPYGARRKD 139


>gi|330889574|gb|EGH22235.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|302336899|ref|YP_003802105.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
 gi|301634084|gb|ADK79511.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
          Length = 671

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 17/78 (21%)

Query: 9   CILCKHTDCVEVC-------PVDCFYEGENFL-------AIHPDECIDCGVCEPECPVDA 54
           C+LC   DCV  C        +D  + GE+         +I   +CI+CG C   CP  A
Sbjct: 146 CVLCG--DCVRYCHEIQGIGAIDFAFRGEHVQVTPAFGRSIGEVDCINCGQCAAVCPTGA 203

Query: 55  IKPDTEPGLELWLKINSE 72
           I P +E   E+W  +  E
Sbjct: 204 IIPKSEIN-EVWNDLQDE 220


>gi|284006928|emb|CBA72199.1| hydrogenase-4 component H [Arsenophonus nasoniae]
          Length = 180

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +         +G+ F  ++   CI CG CE  CP  AI+   E
Sbjct: 38  QQCIGC--GACVNACPSNALTAEIDLPKGQLFWQLNLGRCIFCGRCEEVCPTAAIRLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWRK 103


>gi|271965199|ref|YP_003339395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270508374|gb|ACZ86652.1| 4Fe-4S ferredoxin iron-sulfur binding domain- containing protein
           [Streptosporangium roseum DSM 43021]
          Length = 288

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 87  SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQADVCNGCGYCVPACPYGVI 137


>gi|212696805|ref|ZP_03304933.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676095|gb|EEB35702.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 502

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI     P
Sbjct: 115 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNAISHTKRP 171


>gi|114777067|ref|ZP_01452087.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
 gi|114552588|gb|EAU55048.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
          Length = 194

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +V  + CI C  T C++ CPVD      + +  +  D C  C +C   CPVD I    
Sbjct: 105 LAFVREDECIGC--TLCIKACPVDAIIGAPKQYHTVLADHCTGCELCVEPCPVDCIDMLV 162

Query: 60  EPGL-ELWLKINSEYATQWPNITTKKESL 87
           +P L E W          WP   T++  L
Sbjct: 163 KPELIEHW---------SWPLPETRRSRL 182


>gi|78221282|ref|YP_383029.1| sigma-54 dependent trancsriptional regulator [Geobacter
          metallireducens GS-15]
 gi|78192537|gb|ABB30304.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          metallireducens GS-15]
          Length = 756

 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V E C  C    CV  CPV      +++  I  D CI CG C   CP  A
Sbjct: 7  VKEKCRKCYC--CVRSCPVKAIKVAKSYTEIIVDRCIGCGNCLSNCPQQA 54


>gi|37526970|ref|NP_930314.1| NADH dehydrogenase subunit I [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81707635|sp|Q7N2J4|NUOI_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|36786403|emb|CAE15456.1| NADH dehydrogenase I chain I (NADH-ubiquinone oxidoreductase chain
           9) (NUO9) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 180

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|330984846|gb|EGH82949.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|320325636|gb|EFW81698.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327081|gb|EFW83095.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876899|gb|EGH11048.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|282165282|ref|YP_003357667.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
 gi|282157596|dbj|BAI62684.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
          Length = 94

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 4  VVTENCILCKH--TDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +  E CI CK     C +  P +C ++G+     I  D C  CG+C  ECPVDAI  + E
Sbjct: 33 ISHEKCIGCKRCADSCPDGAPYECAHDGKKKKFCIDYDYCKGCGICAYECPVDAINMEKE 92


>gi|289829884|ref|ZP_06547372.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
          Length = 185

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|188587487|ref|YP_001919032.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352174|gb|ACB86444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA-IKPDTEPGLE 64
           ENC LC+   CV+VCP D  Y   E+ + I+ + C+ CG C   C  +A I P +E   +
Sbjct: 198 ENCTLCER--CVDVCPHDAIYRTEEDQIEINYEICVKCGRCARVCKEEALIVPQSEERFQ 255

Query: 65  LWLKINSEYATQ 76
             L   +  A Q
Sbjct: 256 KGLSEAAYAAVQ 267


>gi|187250889|ref|YP_001875371.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
 gi|186971049|gb|ACC98034.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
          Length = 478

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+VTE C  C    C+  CP +          I P +C +CG C+  CP  AI
Sbjct: 112 NYMVTEVCQGCVARQCIYDCPFNAISMQNGRAYIEPAKCKNCGKCKSACPYGAI 165


>gi|126460106|ref|YP_001056384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249827|gb|ABO08918.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 187

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C++  CV VCP    Y   +  + I+P  CI C  C   CP +A   D E GL +
Sbjct: 61  QCQHCENAPCVTVCPTGASYRDVDGLVKINPALCIGCKYCMVACPYEARWLDEETGLPM 119


>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
          subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +E C  C    CVE CP + +     +G+ +L +   +C+ CG+CE  CP  AI+
Sbjct: 37 SEKCKAC--NVCVETCPTNAYTWIEEQGKRYLQLSHAKCVFCGMCEEVCPYKAIR 89


>gi|296242973|ref|YP_003650460.1| ABC transporter-like protein [Thermosphaera aggregans DSM 11486]
 gi|296095557|gb|ADG91508.1| ABC transporter related protein [Thermosphaera aggregans DSM
          11486]
          Length = 602

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 12/61 (19%)

Query: 3  YVVTENCILCKHTDCVEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y   + C L    +C+  CPV+           E +    I  D+CI CG+C  +CP +A
Sbjct: 11 YCKPDKCTL----ECIRFCPVNRTKKVKAIDLSEDKTHSVIFEDKCIGCGICVKKCPFNA 66

Query: 55 I 55
          I
Sbjct: 67 I 67


>gi|220925117|ref|YP_002500419.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949724|gb|ACL60116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H        T C+EVCP        + +A+ P  C  CG C   CP  A
Sbjct: 272 LCAHSRSRITGCTRCLEVCPTGAIAPAGDHVAVDPFVCAGCGACASVCPTGA 323



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C LC    CV  CP     +  +   L      C+ CG+C   CP D I    EP L
Sbjct: 521 TEACTLCHA--CVGACPTSALSDDPDRPVLTFSESLCVQCGLCAATCPEDVIT--LEPRL 576

Query: 64  EL 65
           + 
Sbjct: 577 DF 578


>gi|126736831|ref|ZP_01752566.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126721416|gb|EBA18119.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 254

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEGV 138


>gi|134045121|ref|YP_001096607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662746|gb|ABO34392.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 138

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--------- 58
            C+ C+   C+ VCP D   + ++ + I  ++CI C +C   CPV AI+ D         
Sbjct: 34  RCMHCEDAPCLNVCPEDAIKKIDDKVVIESEKCIGCALCAEVCPVGAIQIDKCKKVAVKC 93

Query: 59  ---TEPGLELWLKINSEYATQW--PNITTKKESLPSAAK 92
               E G E+ +++    A  +    I  K+  L S  K
Sbjct: 94  DGCVERGSEICMEVCPTKALDYYENTIENKRAELVSKLK 132


>gi|134045694|ref|YP_001097180.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132663319|gb|ABO34965.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 397

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 22/107 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------- 55
           V ++ CI C   DC + CP D     E  +A+ P  C  CG+C+  CPVDAI        
Sbjct: 198 VDSDLCIGC--GDCTDKCPKDLIVLNE-MIAVPPKGCPACGLCKAACPVDAIDLVVEYAP 254

Query: 56  -KPDTEPGLELWLKINSEY----ATQWPN-----ITTKKESLPSAAK 92
            KP T+ G+ +W +    Y    A + PN     +  K   LPS AK
Sbjct: 255 PKPVTDEGI-VWDEEKCAYCGPCALKCPNNAITVVNPKGLELPSRAK 300


>gi|120014|sp|P00193|FER_PEPAS RecName: Full=Ferredoxin
          Length = 54

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           YV+ ++CI C    C   CPV+   +  +  AI  D CIDCG C   CPV A  P+
Sbjct: 1  AYVINDSCIACGA--CKPECPVN--IQQGSIYAIDADSCIDCGSCASVCPVGAPNPE 53


>gi|332526726|ref|ZP_08402828.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
 gi|332111129|gb|EGJ11161.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
          Length = 219

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           VV E+ CI C  T C++ CPVDC       +    D  C  CG+C P CPVD I
Sbjct: 79  VVDESWCIGC--TLCLKACPVDCIVGANKRMHTVIDALCTGCGLCLPACPVDCI 130


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T+ CI C  T C   CPV C     + ++F  I+ ++CI CG C   CPV AI
Sbjct: 575 LHYEITDKCIGC--TKCARGCPVSCIIGKVKEKHF--INQEKCIKCGNCYSVCPVGAI 628


>gi|318604983|emb|CBY26481.1| formate hydrogenlyase subunit 2 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 215

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ILC+H +   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 51  ILCRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 101


>gi|289626586|ref|ZP_06459540.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647568|ref|ZP_06478911.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867251|gb|EGH01960.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|330840005|ref|YP_004414585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Selenomonas sputigena ATCC 35185]
 gi|329747769|gb|AEC01126.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Selenomonas sputigena ATCC 35185]
          Length = 357

 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 17  CVEVCPVDCF---YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CV +CP        EGE+F LA  P  C  CG+C   CP  A++    P  + W
Sbjct: 275 CVRLCPHGALAAEIEGEDFVLAFTPQLCTACGLCTARCPKSALRLAASPTAKRW 328



 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C +VCP   F  G      HPD CI+CG+C   CP  A++
Sbjct: 23 CEDVCPAGAFRWG----VPHPDLCIECGLCTAVCPAAAVE 58


>gi|309776266|ref|ZP_07671256.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915985|gb|EFP61735.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 308

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +CI C+   CV +CP       E  + I P +CI C  C   CPV A+  + E
Sbjct: 54  DCIQCQ--SCVNICPKHAISLSEQRIQIDPRQCIGCMQCLSFCPVHALSNEGE 104


>gi|190151004|ref|YP_001969529.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249916|ref|ZP_07336118.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253741|ref|ZP_07339877.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248722|ref|ZP_07530735.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250968|ref|ZP_07532894.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253340|ref|ZP_07535212.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255583|ref|ZP_07537388.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307260034|ref|ZP_07541746.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262162|ref|ZP_07543813.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264361|ref|ZP_07545949.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189916135|gb|ACE62387.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647397|gb|EFL77617.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650979|gb|EFL81133.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854649|gb|EFM86839.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856996|gb|EFM89126.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859204|gb|EFM91245.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861432|gb|EFM93421.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865870|gb|EFM97746.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868139|gb|EFM99964.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870313|gb|EFN02069.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 205

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++  + F+ ++ D CI C  C   CP DA +   
Sbjct: 59  FAYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEDTCIGCRYCSMACPYDAPQYSA 118

Query: 60  EPG 62
             G
Sbjct: 119 SKG 121


>gi|121535868|ref|ZP_01667666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305533|gb|EAX46477.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 235

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP-------VDAIKPDTE 60
           C  C++  CV VCPV   Y+G++  + I   +CI C  C   CP         A   D  
Sbjct: 81  CFQCENPPCVPVCPVKATYKGDDGIVVIDYTKCIGCRSCVAACPYGARTFDAGAYYTDGT 140

Query: 61  PGLELWLKINS-EYATQWPNITTKKESLPSAAK 92
           P ++ + K  + EY   W   +     + SA K
Sbjct: 141 PAVQEYEKAAAFEYGKAWRRDSKHASIVGSARK 173


>gi|331010114|gb|EGH90170.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|304315261|ref|YP_003850408.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin
           [Methanothermobacter marburgensis str. Marburg]
 gi|313104135|sp|P60232|MVHB_METTM RecName: Full=Polyferredoxin protein mvhB
 gi|302588720|gb|ADL59095.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin
           [Methanothermobacter marburgensis str. Marburg]
          Length = 412

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           E CI C    CVE CP D      + L +  P  C  CG+CE  CPVDAI  D E G
Sbjct: 214 EACIGCNT--CVEACPGDFIVPKSSNLTVELPAICTACGLCEQLCPVDAIDLDVELG 268



 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 20/61 (32%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C+   CV++CPV                  EG  F+A    +C+ CG+C PECPVDA
Sbjct: 107 CVMCQK--CVDICPVGVIGVEGIKEPAKVELEIEGPIFIA----DCVGCGMCVPECPVDA 160

Query: 55  I 55
           I
Sbjct: 161 I 161


>gi|291278907|ref|YP_003495742.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
 gi|290753609|dbj|BAI79986.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
          Length = 260

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +  CI C+   C + CP D      N   IH ++CI+CG CE  CP  AI
Sbjct: 208 VCSVGCIGCRL--CAKNCPEDAITVENNLAYIHAEKCINCGKCEEVCPTKAI 257


>gi|265751809|ref|ZP_06087602.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|263236601|gb|EEZ22071.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
          Length = 309

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           +CI C    CV+VCP +      N   I P +C  C  CEPECP  AI+    P  +P +
Sbjct: 223 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCEPECPKGAIQAINFPPRKPKV 280

Query: 64  E 64
           E
Sbjct: 281 E 281


>gi|218778937|ref|YP_002430255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760321|gb|ACL02787.1| OhcB1 (iron-sulfur binding domain protein with TAT signal)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 325

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           T  V   C+ C +  C ++CP     + +N +  IHPD C+    C+  CP D   P+ +
Sbjct: 117 TITVPRRCMHCTNPPCADLCPFGAARKLKNGITRIHPDICLGGAKCKLVCPWDI--PERQ 174

Query: 61  PGLELWLKINSEYA 74
            G+  +L++   +A
Sbjct: 175 TGVGPYLQVLPNFA 188


>gi|325679199|ref|ZP_08158790.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109128|gb|EGC03353.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 478

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C +VCP        N +A I   +C++CG C   CP  AI     P
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAHIDKSKCVECGRCSKVCPYSAITNRVRP 153


>gi|284050914|ref|ZP_06381124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrospira platensis str. Paraca]
 gi|291569756|dbj|BAI92028.1| ferredoxin-like protein [Arthrospira platensis NIES-39]
          Length = 75

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV  CPV C +       +G ++  I  D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCVGACPVACIHPGPGKNTKGTDWYWIDFDTCIDCGICLQVCPVEGAIVAEERPELQ 71


>gi|260428995|ref|ZP_05782972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Citreicella
           sp. SE45]
 gi|260419618|gb|EEX12871.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Citreicella
           sp. SE45]
          Length = 249

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVPVCPTGASYKRVEDGIVLVNEDACIGCGLCAWACPYGAREMDLAAGV 138


>gi|150402674|ref|YP_001329968.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanococcus maripaludis C7]
 gi|150033704|gb|ABR65817.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanococcus maripaludis C7]
          Length = 85

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + C+ C++  C   CP  C  E +    I  D C  C +CE ECPV AIK + E
Sbjct: 32 DKCVKCEN--CYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKTERE 83


>gi|145298799|ref|YP_001141640.1| hydrogenase 4 Fe-S subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851571|gb|ABO89892.1| hydrogenase 4 Fe-S subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 231

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C+H D   C++VCPV+   +  + + ++   CI C +C   CP  AI    + G    
Sbjct: 49  VQCRHCDDAPCIKVCPVEAIAQTGDCVQLNESLCIGCNLCAVACPFGAI----QSGGSRP 104

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           + + + Y T  P   + + S PS +   G++   E   S  PG ++
Sbjct: 105 VAMANSYDTYIP--CSIRSSNPSTSA--GLRCFGEDLLSWEPGVRS 146


>gi|21227754|ref|NP_633676.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20906156|gb|AAM31348.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 59

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 17 CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CV+ CPV+     E E    +  DEC+DCG CE  CP+ AIK
Sbjct: 16 CVDECPVEAIIIDEDEGCAVVDEDECVDCGACEDVCPIGAIK 57


>gi|154174046|ref|YP_001408940.1| formate dehydrogenase iron-sulfur subunit [Campylobacter curvus
           525.92]
 gi|112804000|gb|EAU01344.1| formate dehydrogenase iron-sulfur subunit [Campylobacter curvus
           525.92]
          Length = 190

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 10  ILCKH-TD--CVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           I C+H TD  C +VCPVDCFY   + + +H   +CI C  C   CP  A
Sbjct: 54  IACQHCTDAPCEQVCPVDCFYIRADGIVLHDKHKCIGCAYCLYACPFGA 102


>gi|170727211|ref|YP_001761237.1| NADH-quinone oxidoreductase subunit I [Shewanella woodyi ATCC
           51908]
 gi|226737416|sp|B1KJV5|NUOI_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|169812558|gb|ACA87142.1| NADH-quinone oxidoreductase, chain I [Shewanella woodyi ATCC 51908]
          Length = 171

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 23/92 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCF-----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C   CPVDC            +E E+F  I+   CI CG CE  CP  AI
Sbjct: 49  ERCVACNL--CSVACPVDCISVVKTEKEDGRWEAESF-TINFSRCIMCGFCEEACPTHAI 105

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESL 87
           +    P +E+     +EY  Q  N+  +KE L
Sbjct: 106 Q--LTPDVEM-----AEYDRQ--NLVFEKEHL 128


>gi|330966554|gb|EGH66814.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 310

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 102 VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIE 156


>gi|307257755|ref|ZP_07539512.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863661|gb|EFM95587.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 205

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++  + F+ ++ D CI C  C   CP DA +   
Sbjct: 59  FAYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEDTCIGCRYCSMACPYDAPQYSA 118

Query: 60  EPG 62
             G
Sbjct: 119 SKG 121


>gi|266621852|ref|ZP_06114787.1| ferredoxin, 4Fe-4S [Clostridium hathewayi DSM 13479]
 gi|288866485|gb|EFC98783.1| ferredoxin, 4Fe-4S [Clostridium hathewayi DSM 13479]
          Length = 83

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C  T C ++CP+D +    +G+    ++P+EC  C  CE +CPV AI
Sbjct: 8  SKCISC--TTCAQICPLDVYGPVIKGQKPEVLYPNECWHCRACEFDCPVGAI 57


>gi|332161103|ref|YP_004297680.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325665333|gb|ADZ41977.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 213

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          ILC+H +   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 49 ILCRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 99


>gi|164686864|ref|ZP_02210892.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
          16795]
 gi|164604254|gb|EDQ97719.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
          16795]
          Length = 273

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  V  E CI C  + CV+ CPV      +N   I+ + C  CG C   CPV+A+  D
Sbjct: 1  MFSVNKEKCIGC--SQCVKDCPVSTISLVDNKAEINNERCFKCGHCIAICPVEAVSTD 56


>gi|18314097|ref|NP_560764.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
 gi|18161681|gb|AAL64946.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
          Length = 390

 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPD--TEPGLELW 66
           + P  C+ CG+C   CP +A KP+   E  LELW
Sbjct: 354 VDPALCVGCGICAEVCPFNAFKPEGKREAWLELW 387


>gi|312136492|ref|YP_004003829.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224211|gb|ADP77067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 164

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  CK+  CVE CP            +  D+CI CG C  ECP  AI        +  L 
Sbjct: 44  CHHCKNAPCVEACPTG----AMKINYVDTDKCIGCGSCALECPFGAISIKNNVAHKCNLC 99

Query: 69  INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
            N +Y        TK  +L    K   +K+K E+Y +
Sbjct: 100 DNLDYPACVRACPTKALTLIDVEKF--IKRKKEEYLN 134


>gi|303243651|ref|ZP_07329992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485893|gb|EFL48816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 426

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVD--CFYEGENFL-AIHPDECIDCGVCEPECPVDAI--- 55
           Y++ EN CI C+   C +VC VD       E  L  I+P+ C+ CG+C  ECPVDAI   
Sbjct: 312 YIIDENKCIGCRI--CYKVCNVDNAISISSETRLPYINPEYCVRCGLCYRECPVDAIGLT 369

Query: 56  KPDTEPGLELWLKINSEYAT 75
           K +   G     KI  E+ +
Sbjct: 370 KTEEVFGRYKLRKIRDEFES 389


>gi|298488743|ref|ZP_07006772.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156816|gb|EFH97907.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 290

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|261403798|ref|YP_003248022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370791|gb|ACX73540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 64

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          + +NC+ C    CV  CP     +      I+ ++C++CG+C   CP+DAIK DT
Sbjct: 6  ILKNCVGC--GTCVVFCPKKAI-KTYGVAIINKEKCVNCGICVKYCPIDAIKVDT 57


>gi|111027053|ref|YP_709031.1| polysulphide reductase [Rhodococcus jostii RHA1]
 gi|110825592|gb|ABH00873.1| probable polysulphide reductase [Rhodococcus jostii RHA1]
          Length = 509

 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPD 58
           C  C    CV++CP    ++ ++ +    +E CI C  C   CP DA+  D
Sbjct: 60  CNHCTDAPCVKICPTQALFKRDDGIVDFDNERCIGCKSCMQACPYDALYID 110


>gi|253989007|ref|YP_003040363.1| NADH dehydrogenase subunit I [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780457|emb|CAQ83619.1| NADH-quinone oxidoreductase subunit I [Photorhabdus asymbiotica]
          Length = 180

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|240948525|ref|ZP_04752898.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor NM305]
 gi|240297033|gb|EER47604.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor NM305]
          Length = 205

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYLSISCNHCSDPACTKVCPTGAMHKNEDGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 KKG 121


>gi|281358774|ref|ZP_06245249.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
 gi|281314729|gb|EFA98767.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
          Length = 582

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y +   C  C    CV  CPV      +   A+ P+ C+ CG C   CPV A +     G
Sbjct: 8   YTIEAECQDC--YKCVRHCPVKAIRVRDGHAAVIPELCVACGKCVEVCPVKAKQVRNGTG 65

Query: 63  -LELWLKINSE-YATQWPNITTKKESLPSAAKMDGVKQ 98
            L L L   +  YA+  P+  ++ +++ S   +  +KQ
Sbjct: 66  RLRLLLSEPAPVYASLAPSWVSEFKNVASGQLIRALKQ 103


>gi|167629546|ref|YP_001680045.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein, putative
          [Heliobacterium modesticaldum Ice1]
 gi|119675286|gb|ABL89192.1| ferredoxin-like protein [Heliobacterium modesticaldum]
 gi|167592286|gb|ABZ84034.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein, putative
          [Heliobacterium modesticaldum Ice1]
          Length = 54

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +++ C+ C    C + CPV+   +G+ +     D CIDCG C   CP  AI 
Sbjct: 1  MVYKISDACVACGA--CEDACPVNAIIKGDVYSI--TDACIDCGTCADTCPAGAIS 52


>gi|257063524|ref|YP_003143196.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256791177|gb|ACV21847.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 447

 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 17  CVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+++CP    +    +GE      P  C++CGVC   CP +AIK
Sbjct: 324 CMQMCPTGSIHHTLGDGEFVYEFSPGTCVNCGVCVASCPKEAIK 367


>gi|237752820|ref|ZP_04583300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376309|gb|EEO26400.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTE 60
           V  +C +C+HT CV VCP    +  EN +  I   +C+ C  C   CP +A  + P+T+
Sbjct: 55  VRHSCEMCEHTPCVTVCPTHASFMDENGIVDIDASQCVGCLYCVVACPYNARYVNPETK 113


>gi|320101259|ref|YP_004176851.1| hypothetical protein Desmu_1067 [Desulfurococcus mucosus DSM
          2162]
 gi|319753611|gb|ADV65369.1| protein of unknown function DUF362 [Desulfurococcus mucosus DSM
          2162]
          Length = 61

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          MT ++ +   C LC    CVE CP   F   E  + +  + C++C  CEP CP  A+K
Sbjct: 1  MTRILLDESKCTLCML--CVEYCPAFVFTLREGRIVVEAERCVECYACEPLCPAGAVK 56


>gi|91780908|ref|YP_556115.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
 gi|91693568|gb|ABE36765.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
          Length = 414

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C   CP  AI
Sbjct: 18 EICIRC--NTCEETCPIDAITHDDNNYVVKADVCNGCMACVSPCPTGAI 64



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|15679144|ref|NP_276261.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|41017307|sp|Q50784|MVHB_METTH RecName: Full=Polyferredoxin protein mvhB
 gi|2622237|gb|AAB85622.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 412

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 20/69 (28%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C+   CV++CPV                  EG  F+A    +C+ CG+C PECPVDA
Sbjct: 107 CVMCQK--CVDICPVGVIGVEGIKEPAKVELEIEGPIFIA----DCVGCGMCVPECPVDA 160

Query: 55  IKPDTEPGL 63
           I  D   G+
Sbjct: 161 ITLDKVGGV 169



 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 13/84 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI---------K 56
           + CI C    CVE CP D      + L +  P  C  CG+CE  CPVDAI         K
Sbjct: 214 DACIGCNT--CVEACPGDFIVPRTSNLTVELPAICTACGLCEQLCPVDAIDLEVELGPAK 271

Query: 57  PDTEPGLELWLKINSEYATQWPNI 80
           P +E GL +W +   ++     NI
Sbjct: 272 PASEEGL-VWDEEKCDFIGACANI 294


>gi|330973101|gb|EGH73167.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 291

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCIAPCPVDCIE 137


>gi|330877327|gb|EGH11476.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 291

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCVAPCPVDCIE 137


>gi|312137196|ref|YP_004004533.1| formylmethanofuran dehydrogenase, subunit h [Methanothermus
           fervidus DSM 2088]
 gi|311224915|gb|ADP77771.1| formylmethanofuran dehydrogenase, subunit H [Methanothermus
           fervidus DSM 2088]
          Length = 154

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
           +  NF  +  D CI CG C  +CP+DAIK        L  K+NS+ 
Sbjct: 88  QNRNFKVLVKDSCIGCGTCSEKCPMDAIKISG-----LKAKVNSKL 128


>gi|91975987|ref|YP_568646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
 gi|91682443|gb|ABE38745.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C +  CVEVCP       E+  + I  D CI C  C   CP DA   + +P      
Sbjct: 59  CMHCANPPCVEVCPTTATRRREDGLVTIDYDICIGCANCIMACPYDARSIEHQPRYAFGK 118

Query: 68  KINSEYATQWP 78
            +  E A   P
Sbjct: 119 AMTHEIARSSP 129


>gi|163847096|ref|YP_001635140.1| cyclic nucleotide-binding protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524931|ref|YP_002569402.1| cyclic nucleotide-binding protein [Chloroflexus sp. Y-400-fl]
 gi|163668385|gb|ABY34751.1| cyclic nucleotide-binding [Chloroflexus aurantiacus J-10-fl]
 gi|222448810|gb|ACM53076.1| cyclic nucleotide-binding protein [Chloroflexus sp. Y-400-fl]
          Length = 477

 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI------KP 57
           V ++C  C    +CVEVCP D     +       + C  CG C   CP DA+      + 
Sbjct: 353 VLDHCRQCSVGAECVEVCPEDAIERVDTGALRITNRCTGCGECVSACPYDAVTSVPRTRH 412

Query: 58  DTEPGLELWLKINSEYATQWP 78
            T P  EL+ ++        P
Sbjct: 413 STGPLWELFRRLQQRVRPSIP 433


>gi|312138684|ref|YP_004006020.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodococcus
           equi 103S]
 gi|311888023|emb|CBH47335.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodococcus
           equi 103S]
          Length = 315

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI----KPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I     P  +
Sbjct: 126 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQNDICNGCGYCLPACPYGVIDRREGPAGD 185

Query: 61  PGLELWLK 68
           P + L  K
Sbjct: 186 PAVGLAQK 193


>gi|254448470|ref|ZP_05061930.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
 gi|198261853|gb|EDY86138.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
          Length = 200

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPGLE 64
           E CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I   D +P  +
Sbjct: 115 EGCIGC--TLCIQACPVDAILGAAKQMHTVITDECTGCELCVEPCPVDVITMEDIQPTTQ 172

Query: 65  LW 66
            W
Sbjct: 173 TW 174


>gi|149734|gb|AAB02352.1| mvhB [Methanothermobacter thermautotrophicus]
          Length = 412

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 20/69 (28%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C+   CV++CPV                  EG  F+A    +C+ CG+C PECPVDA
Sbjct: 107 CVMCQK--CVDICPVGVIGVEGIKEPAKVELEIEGPIFIA----DCVGCGMCVPECPVDA 160

Query: 55  IKPDTEPGL 63
           I  D   G+
Sbjct: 161 ITLDKVGGV 169



 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 13/84 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI---------K 56
           + CI C    CVE CP D      + L +  P  C  CG+CE  CPVDAI         K
Sbjct: 214 DACIGCNT--CVEACPGDFIVPRTSNLTVELPAICTACGLCEQLCPVDAIDLEVELGPAK 271

Query: 57  PDTEPGLELWLKINSEYATQWPNI 80
           P +E GL +W +   ++     NI
Sbjct: 272 PASEEGL-VWDEEKCDFIGACANI 294


>gi|260905039|ref|ZP_05913361.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Brevibacterium linens BL2]
          Length = 381

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 183 CKHCTHAGCLDVCPTGALFRTEFDTVVVQNDVCNGCGTCVAGCPFGVIE 231


>gi|257457555|ref|ZP_05622722.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
 gi|257444941|gb|EEV20017.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
          Length = 56

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +++ C+ C    C   CPV    E      I  D CI CG C   CP +AI 
Sbjct: 1  MAYKISDACVNCGA--CEGECPVGAISEANGARVIDADACISCGACAGVCPTEAIS 54


>gi|207721377|ref|YP_002251818.1| ferredoxin protein [Ralstonia solanacearum MolK2]
 gi|206586536|emb|CAQ17123.1| ferredoxin protein [Ralstonia solanacearum MolK2]
          Length = 708

 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +   +  L++    C+ CG+CE  CP DAI
Sbjct: 580 CTLC--MACVSACPSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAI 626


>gi|159905554|ref|YP_001549216.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887047|gb|ABX01984.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 167

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C+H   + C+EVCPV      +  + +  + CI CG+C   CP  AI
Sbjct: 42 VVCQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAI 90


>gi|154148996|ref|YP_001406324.1| ferredoxin [Campylobacter hominis ATCC BAA-381]
 gi|153805005|gb|ABS52012.1| ferredoxin [Campylobacter hominis ATCC BAA-381]
          Length = 82

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C + CPV   YE E    I PD C +C        C  ECPV+ 
Sbjct: 1  MSLMITKDCICCDA--CKDECPVGAIYEDEPIYVIDPDLCCECVNDYSEPACIVECPVEC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IVPD 62


>gi|302184712|ref|ZP_07261385.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae 642]
          Length = 291

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIIDECTGCDLCIAPCPVDCIE 137


>gi|300865547|ref|ZP_07110328.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oscillatoria sp. PCC
          6506]
 gi|300336453|emb|CBN55478.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oscillatoria sp. PCC
          6506]
          Length = 75

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           DCV+ CPV C +EG        ++  I    CIDCG+C   CPV  AI  +  P L+
Sbjct: 14 ADCVDACPVACIHEGPGKNVKGTDWYWIDFQTCIDCGICLQVCPVAGAIVAEERPELQ 71


>gi|262279872|ref|ZP_06057657.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260223|gb|EEY78956.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 263

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|227328564|ref|ZP_03832588.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 674

 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTSP 108


>gi|126725238|ref|ZP_01741081.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126706402|gb|EBA05492.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 249

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL- 63
           ++C+ C    CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+ 
Sbjct: 80  KSCLHCDDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREMDQAEGVM 139

Query: 64  -ELWLKINSEYATQWPNITTKK---ESLPSAAKMDG 95
            +  L ++  Y    P +  +     + PS A+  G
Sbjct: 140 KKCTLCVDRIYNENLPEVDREPACVRTCPSGARHFG 175


>gi|327310274|ref|YP_004337171.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermoproteus uzoniensis 768-20]
 gi|326946753|gb|AEA11859.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus uzoniensis 768-20]
          Length = 595

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 3   YVVTENCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVV + C  C     V  C  +    +G+ +  I P  C  C +C   CP DAIKP TEP
Sbjct: 526 YVVADKCRSCGICYNVLKCYAIAKLPDGKAW--IDPSLCSGCSMCAQVCPYDAIKP-TEP 582

Query: 62  G-----LELW 66
                 LELW
Sbjct: 583 EKVGKWLELW 592


>gi|312881025|ref|ZP_07740825.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
 gi|310784316|gb|EFQ24714.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
          Length = 576

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y  T NC  C    C+  CPV      E    + P+ C+ CG+C   CP  A
Sbjct: 8  YTQTNNCHDC--FKCLRQCPVKAIRLEEGHARVLPELCVSCGLCVEVCPAKA 57


>gi|268609516|ref|ZP_06143243.1| hypothetical protein RflaF_08470 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C    C+  CP  C    E  L I  + C+ CG C   CPV A+
Sbjct: 153 YFVTDDCIRCG--SCLSDCPQSCIELKEKAL-IRQENCLHCGNCAAVCPVGAV 202


>gi|227501325|ref|ZP_03931374.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227216558|gb|EEI81964.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 508

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CV VCP +          I  D+CI CG C   CP  AI     P
Sbjct: 115 VTDQCHACIGHPCVNVCPKNAVSYSAKGAYIDQDKCIKCGKCVDACPYHAINHQKRP 171


>gi|268591456|ref|ZP_06125677.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313110|gb|EFE53563.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 212

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA--IK 56
             Y ++ +C  C    CV+ CP    +  EG+  + ++ D+C+ CG C   CP  A  + 
Sbjct: 70  FAYTLSISCNHCADPMCVKNCPTTAMHKREGDGIVMVNTDKCVGCGTCAWSCPYGAPQMN 129

Query: 57  PDTE 60
           P+T+
Sbjct: 130 PETK 133


>gi|207742645|ref|YP_002259037.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|206594039|emb|CAQ60966.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
          Length = 708

 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +   +  L++    C+ CG+CE  CP DAI
Sbjct: 580 CTLC--MACVSACPSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAI 626


>gi|123443013|ref|YP_001006988.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122089974|emb|CAL12831.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 213

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          ILC+H +   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 49 ILCRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 99


>gi|304411591|ref|ZP_07393204.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307306633|ref|ZP_07586375.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304350118|gb|EFM14523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910601|gb|EFN41030.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 188

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH ++C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPYKVRFMNPETK 114


>gi|56477086|ref|YP_158675.1| formate dehydrogenase iron-sulfur subunit [Aromatoleum aromaticum
           EbN1]
 gi|56313129|emb|CAI07774.1| Formate dehydrogenase iron-sulfur subunit [Aromatoleum aromaticum
           EbN1]
          Length = 201

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C+ C    C+ VCP +  Y  E  + +H  D CI CG C   CP  A
Sbjct: 55  CMHCSDAPCIAVCPTNVIYHTEEGVVLHDKDGCIGCGYCFYACPFGA 101


>gi|253690638|ref|YP_003019828.1| glutamate synthase, small subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757216|gb|ACT15292.1| glutamate synthase, small subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 674

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNP 108


>gi|206901578|ref|YP_002250818.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740681|gb|ACI19739.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 266

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 16  DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           DCV+VCP D  Y GE+ L  I  ++C  CG+C   CP
Sbjct: 147 DCVKVCPFDAIYMGEDGLPKIDIEKCTGCGLCVKACP 183


>gi|154500597|ref|ZP_02038635.1| hypothetical protein BACCAP_04270 [Bacteroides capillosus ATCC
           29799]
 gi|150270486|gb|EDM97795.1| hypothetical protein BACCAP_04270 [Bacteroides capillosus ATCC
           29799]
          Length = 557

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSEYA 74
           C+  CPV      ++   I PDECI CG C   CP +A  ++ D      L       YA
Sbjct: 18  CIRNCPVKSIRFSDHQANIVPDECILCGRCFVACPQNAKEVRDDLPAARALLASGAPVYA 77

Query: 75  TQWPNITTKKESLPSAAKMDGVKQ 98
           +  P+     E +  ++    +KQ
Sbjct: 78  SVAPSFVAAWEGVTISSMEAALKQ 101


>gi|83590757|ref|YP_430766.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
          pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
          39073]
 gi|83573671|gb|ABC20223.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
          pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
          39073]
          Length = 96

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C   CP  CF  GE  + ++ D C  CG+C  ECP  A+
Sbjct: 43 CWLFCPEGCFRRGEEAVTLNLDFCKGCGICVTECPRQAL 81


>gi|146304360|ref|YP_001191676.1| thiamine pyrophosphate binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145702610|gb|ABP95752.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Metallosphaera sedula DSM 5348]
          Length = 607

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I+P +CI CG C P CP +AIK + E
Sbjct: 571 INPQDCIGCGACVPVCPFNAIKLEGE 596


>gi|114566570|ref|YP_753724.1| signal transduction histidine kinase regulating C4-dicarboxylate
          transport system-like protein [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337505|gb|ABI68353.1| Signal transduction histidine kinase regulating C4-dicarboxylate
          transport system-like protein [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
          Length = 696

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPEC 50
          ENCI C    C+ VCPV    +G  N +  H   CI CG C   C
Sbjct: 13 ENCINCHQ--CIAVCPVKICSDGSGNVVKFHNHLCIGCGRCIEAC 55


>gi|325916606|ref|ZP_08178869.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537160|gb|EGD08893.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 139

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 80  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 134


>gi|323978823|gb|EGB73904.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 162

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q    +   ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGSACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|307299220|ref|ZP_07579021.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915016|gb|EFN45402.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 359

 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CVEVCP       E  + +   EC  CG+CE  CPV AI
Sbjct: 317 CVEVCPYFALSLQEK-VEVDSAECFGCGLCESICPVAAI 354


>gi|302344389|ref|YP_003808918.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301641002|gb|ADK86324.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 356

 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C++ C +     G++ LA I  D CI CG+C   CP +A+    +P  +L
Sbjct: 280 CTGCE--TCLDRCQMKAIVMGDDGLARIDLDRCIGCGLCVTTCPTEALTLQAKPSAQL 335


>gi|256838495|ref|ZP_05544005.1| flavodoxin [Parabacteroides sp. D13]
 gi|256739414|gb|EEU52738.1| flavodoxin [Parabacteroides sp. D13]
          Length = 268

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + ++ T  CI C+   C+++CP+  F   +  L      CI C +C   CP  +I     
Sbjct: 183 VVFLNTSTCINCE--KCIKICPMHIFARRDTVLPTDEKNCIQCRLCADNCPTSSIYIHES 240

Query: 61  PGLELWLKINSEYATQWPN 79
               L + I   ++ +  N
Sbjct: 241 FLNGLRIAIRESFSDKLQN 259


>gi|313114957|ref|ZP_07800452.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622717|gb|EFQ06177.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 516

 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI     P
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSIIDQDKCIKCGRCVGVCPYNAIVKTERP 177


>gi|307266103|ref|ZP_07547648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918885|gb|EFN49114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 372

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V + C  C+   C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 IVGKGCTACQM--CIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYATQWPNITTKKESL 87
           + +++  +EYA  +   +TKK  +
Sbjct: 248 DAFVERMTEYA--YGAYSTKKGKI 269


>gi|266623462|ref|ZP_06116397.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
 gi|288864757|gb|EFC97055.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
          Length = 203

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++CI C    C E CP  C   G     I    C+ CG+C+  CPV A+
Sbjct: 149 YFITDDCIGCGQ--CTESCPQKCIAPGVP-CRIDGSHCLRCGLCQEVCPVGAV 198


>gi|227355469|ref|ZP_03839865.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|227164456|gb|EEI49340.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 209

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y +T +C  C    CV+ CP    ++  G+  + +   +C+ CG C   CP  A + +
Sbjct: 70  FAYTLTISCNHCDDPICVKNCPTTAMHKRPGDGIVRVDTSKCVGCGYCSWSCPYGAPQMN 129

Query: 59  TEPG 62
           TE G
Sbjct: 130 TETG 133


>gi|148262563|ref|YP_001229269.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Geobacter uraniireducens Rf4]
 gi|146396063|gb|ABQ24696.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
          uraniireducens Rf4]
          Length = 96

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPG----- 62
          CI C    CVEVCP   F   E    I   D C++CG C   CP  AIK D   G     
Sbjct: 20 CIGCGR--CVEVCPHKVFSLAEKRSRIVDFDGCMECGACAKNCPTAAIKVDAGVGCASGL 77

Query: 63 LELWLK 68
          +  WL+
Sbjct: 78 ITEWLR 83


>gi|88706625|ref|ZP_01104328.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
 gi|88699121|gb|EAQ96237.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
          Length = 202

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +++ E+CI C  T C++ CPVD      +    +   EC  C +C   CPVD I+
Sbjct: 113 VAFIIEEDCIGC--TKCIQACPVDAILGAAKQMHTVIASECTGCDLCVDPCPVDCIE 167


>gi|289662868|ref|ZP_06484449.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 139

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 80  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 134


>gi|291286605|ref|YP_003503421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883765|gb|ADD67465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 248

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           ++  C  C +  CVE CP+   Y+ E +  + ++ + CI CG C+  CP DA
Sbjct: 104 ISLACNHCTNPACVEACPMGIIYKEEEYGLVLVNNETCISCGKCKEACPWDA 155


>gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
 gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
          Length = 629

 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA----------IHPDECIDCGVCEPECP 51
           NCI C  + C + CPVD   +   + A           H D CI+CGVC   CP
Sbjct: 378 NCIRC--SSCSDACPVDLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP 429


>gi|149909813|ref|ZP_01898464.1| putative oxidoreductase [Moritella sp. PE36]
 gi|149807145|gb|EDM67101.1| putative oxidoreductase [Moritella sp. PE36]
          Length = 134

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 12/63 (19%)

Query: 8  NCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIKP 57
          NC+ C+   C ++CP DC     YE E          I    C+ CG+CE  CP DAIK 
Sbjct: 10 NCVGCEL--CAKICPCDCITVVPYEDEKGNRRPKVFDIDLARCLYCGLCEDACPADAIKL 67

Query: 58 DTE 60
            E
Sbjct: 68 GQE 70


>gi|148266186|ref|YP_001232892.1| sigma-54 dependent trancsriptional regulator [Geobacter
          uraniireducens Rf4]
 gi|146399686|gb|ABQ28319.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          uraniireducens Rf4]
          Length = 755

 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +TE C  C    CV  CPV      +N+  I  + CI CG C   CP  A
Sbjct: 7  LTEKCRKC--YSCVRSCPVKAIKVEKNYSEIIFERCIGCGNCLSNCPQHA 54


>gi|67474180|ref|XP_652839.1| Fe-hydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|27652439|gb|AAO17820.1| putative long iron-dependent hydrogenase 2 [Entamoeba histolytica]
 gi|56469743|gb|EAL47464.1| Fe-hydrogenase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 504

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C   CP  C   GE+  A I+ + CI CG C   CP  AI   + P
Sbjct: 113 YFVTQACEGCTSRPCSVNCPKKCISFGEDGRAVINQNNCIKCGRCYKFCPYGAIISKSVP 172



 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 10  ILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           I+ K   CV+ CP     +  E    I  ++CI+CG C   CP  AI P +
Sbjct: 166 IISKSVPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRACPFGAILPRS 216


>gi|330957741|gb|EGH58001.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 291

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIIDECTGCDLCIAPCPVDCI 136


>gi|299771076|ref|YP_003733102.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
 gi|298701164|gb|ADI91729.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
          Length = 263

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|289670256|ref|ZP_06491331.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 139

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 80  VAWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 134


>gi|284049221|ref|YP_003399560.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953442|gb|ADB48245.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 418

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           K  DCV+VC  D  +   + + I PD+C+ C  C   C ++++K
Sbjct: 63  KQADCVKVCQWDAMHPSADGVQIDPDKCVGCQACVDACKLESLK 106


>gi|258516351|ref|YP_003192573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257780056|gb|ACV63950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 55

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M+Y +TE C  C    C + CP D   EG +   I  ++C +CG C  ECP  AI
Sbjct: 1  MSYRITEACEACGT--CKDACPNDAIIEG-DIYKIDAEKCAECGACVEECPTGAI 52


>gi|170758777|ref|YP_001788618.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405766|gb|ACA54177.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
          Length = 497

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|152999082|ref|YP_001364763.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160873678|ref|YP_001552994.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971766|ref|YP_002356517.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|151363700|gb|ABS06700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160859200|gb|ABX47734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496901|gb|ACK45094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|315265908|gb|ADT92761.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 188

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH ++C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPYKVRFMNPETK 114


>gi|294643271|ref|ZP_06721097.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294806465|ref|ZP_06765306.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC
          1b]
 gi|292641394|gb|EFF59586.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446328|gb|EFG14954.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC
          1b]
          Length = 402

 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

Query: 11 LCKHTDC------VEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +C+H +C      V VC  +  +  E+     +  ++ D CIDCG+C+  CP +     +
Sbjct: 5  ICQHNECTGCSACVNVCGKNAIFYCEDKIGFRYPVVNLDLCIDCGLCQKVCPNNVEVDKS 64

Query: 60 EPGL 63
          EP L
Sbjct: 65 EPTL 68


>gi|313112714|ref|ZP_07798363.1| ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624970|gb|EFQ08276.1| ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 55

 Score = 37.0 bits (84), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV      +   +++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCGA--CEGACPVGAITV-DGVASVNADACIDCGACEGACPTGAITAE 55


>gi|307594911|ref|YP_003901228.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Vulcanisaeta distributa DSM 14429]
 gi|307550112|gb|ADN50177.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 616

 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV  + C  C     +  CP     E      I P+ C+ C VC   CP +AIKP  E  
Sbjct: 549 YVDLDACKACGICYNLIACPAIVPLENRKAW-IDPNMCVGCSVCAQVCPYNAIKP--EGN 605

Query: 63  LELWLK 68
           ++ WLK
Sbjct: 606 VKDWLK 611


>gi|302528270|ref|ZP_07280612.1| formate dehydrogenase, beta subunit [Streptomyces sp. AA4]
 gi|302437165|gb|EFL08981.1| formate dehydrogenase, beta subunit [Streptomyces sp. AA4]
          Length = 276

 Score = 37.0 bits (84), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C P CP   I+
Sbjct: 96  SDVCKHCTHAACLDVCPTGALFRTEFDTVVVQQDICNGCGYCVPACPYGVIE 147


>gi|48477969|ref|YP_023675.1| ferredoxin [Picrophilus torridus DSM 9790]
 gi|48430617|gb|AAT43482.1| ferredoxin [Picrophilus torridus DSM 9790]
          Length = 70

 Score = 37.0 bits (84), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          CV +CP D  +  E  + I+ ++CI CG C   CP  AI  +   G +L
Sbjct: 22 CVGMCPTDAIFMDETVIDINEEKCIKCGFCVVGCPTGAITAEWFHGSKL 70


>gi|48675343|dbj|BAD22819.1| ferredoxin2 [Heliobacillus mobilis]
          Length = 54

 Score = 37.0 bits (84), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CV  C  +   E      I  D+C+DCGVC+  CPVDAIK 
Sbjct: 15 CVSGCYTNAIVEANGKYTI-TDDCVDCGVCQDSCPVDAIKA 54


>gi|302339991|ref|YP_003805197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637176|gb|ADK82603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 292

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI CK   C+  CPVD F   +  + +H D   CI C  C   CP  AI+    P +E+
Sbjct: 215 KCIKCK--KCISACPVDMFTYADGEIVMHRDNSSCILCAECFHTCPAGAIE---HPYIEM 269

Query: 66  WLK-INSEYA 74
             K +N  +A
Sbjct: 270 GRKRLNDGFA 279


>gi|317050799|ref|YP_004111915.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945883|gb|ADU65359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurispirillum indicum S5]
          Length = 176

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC----FYEGENFL-------------AIHPDECIDCGV 45
           Y + E CI C    CV+ CP+D     F+  +  +              +   ECI CG+
Sbjct: 68  YFIEEKCIACNM--CVKACPIDVIQLEFHREDREVDGKVKKVPVIDKYTVDIGECISCGL 125

Query: 46  CEPECPVDAIKPDTEPGL-----ELWLKINSEYATQWPNITTKK 84
           C   CP DA+    E        EL++    E A  +P    KK
Sbjct: 126 CAEHCPTDAVFQSQEYETAYYYKELFVMNKDELAMTFPEYIEKK 169


>gi|260576503|ref|ZP_05844492.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259021226|gb|EEW24533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 245

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+   +  + ++   CI CG+C   CP  A + D   G+
Sbjct: 80  RSCLHCQDAPCVPVCPTGASYKRAEDGIVLVNAAACIGCGLCAWACPYGARELDAAAGV 138


>gi|226327317|ref|ZP_03802835.1| hypothetical protein PROPEN_01184 [Proteus penneri ATCC 35198]
 gi|225204535|gb|EEG86889.1| hypothetical protein PROPEN_01184 [Proteus penneri ATCC 35198]
          Length = 188

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +LC+H +   C  VCPV+     +N + ++   CI C +C   CP  AI P
Sbjct: 31 MLCRHCEDAPCARVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAITP 81


>gi|206890889|ref|YP_002248948.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742827|gb|ACI21884.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 187

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E C+ C  T C +VCP  C Y         G   L    I    CI CG CE  CPV+AI
Sbjct: 59  ERCVAC--TKCAQVCPSQCIYIDYSINPETGARVLTKYEIDALRCIFCGYCEEVCPVNAI 116


>gi|313681563|ref|YP_004059301.1| 4fe-4S ferredoxin [Sulfuricurvum kujiense DSM 16994]
 gi|313154423|gb|ADR33101.1| 4Fe-4S ferredoxin [Sulfuricurvum kujiense DSM 16994]
          Length = 84

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ + CI C    C E CP+D   EG+    I PD C +C        C   CPVD 
Sbjct: 1  MPLLIVDECIACDA--CREECPMDAIEEGDPIYIIDPDRCTECVGTYDEPACIAVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDKD 64


>gi|262406391|ref|ZP_06082940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. 2_1_22]
 gi|262355094|gb|EEZ04185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. 2_1_22]
          Length = 401

 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%)

Query: 11 LCKHTDC------VEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +C+H +C      V VC  +  +  E+     +  ++ D CIDCG+C+  CP +     +
Sbjct: 4  ICQHNECTGCSACVNVCGKNAIFYCEDKIGFRYPVVNLDLCIDCGLCQKVCPNNVEVDKS 63

Query: 60 EPGL 63
          EP L
Sbjct: 64 EPTL 67


>gi|330859342|emb|CBX69688.1| formate hydrogenlyase subunit 2 [Yersinia enterocolitica W22703]
          Length = 257

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ILC+H +   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 93  ILCRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 143


>gi|302548559|ref|ZP_07300901.1| 4Fe-4S ferredoxin, iron-sulfur binding [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302466177|gb|EFL29270.1| 4Fe-4S ferredoxin, iron-sulfur binding [Streptomyces
          himastatinicus ATCC 53653]
          Length = 138

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDA--IK 56
          +  V  E CI C    CV+VCP + F  G + + +    ++C  C  CE  CPVDA  + 
Sbjct: 18 IELVSAERCIACDK--CVKVCPTNVFDRGPDGVPLLSRQEDCQTCFQCEANCPVDALFVA 75

Query: 57 PDTEP 61
          P T P
Sbjct: 76 PVTHP 80


>gi|229829818|ref|ZP_04455887.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
 gi|229791807|gb|EEP27921.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
          Length = 219

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    C  VCP +C         I  + C+ CG C   CPV A++
Sbjct: 166 YFITDACIGCG--SCAAVCPQNCIVTDSIPYIIEQEHCLHCGNCLTACPVGAVE 217


>gi|145628000|ref|ZP_01783801.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.1-21]
 gi|145630136|ref|ZP_01785918.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|145634201|ref|ZP_01789912.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittAA]
 gi|145636509|ref|ZP_01792177.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittHH]
 gi|145638142|ref|ZP_01793752.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittII]
 gi|260581897|ref|ZP_05849693.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|319776718|ref|YP_004139206.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3047]
 gi|319897467|ref|YP_004135664.1| oxidoreductase, fe-s subunit [Haemophilus influenzae F3031]
 gi|329123894|ref|ZP_08252448.1| anaerobic dimethyl sulfoxide reductase subunit B [Haemophilus
           aegyptius ATCC 11116]
 gi|144979775|gb|EDJ89434.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.1-21]
 gi|144984417|gb|EDJ91840.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|145268645|gb|EDK08638.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittAA]
 gi|145270334|gb|EDK10269.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittHH]
 gi|145272471|gb|EDK12378.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittII]
 gi|260095090|gb|EEW78982.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|309751304|gb|ADO81288.1| Anaerobic dimethyl sulfoxide reductase, subunit B [Haemophilus
           influenzae R2866]
 gi|309973477|gb|ADO96678.1| Anaerobic dimethyl sulfoxide reductase, subunit B [Haemophilus
           influenzae R2846]
 gi|317432973|emb|CBY81342.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3031]
 gi|317451309|emb|CBY87547.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3047]
 gi|327468501|gb|EGF13982.1| anaerobic dimethyl sulfoxide reductase subunit B [Haemophilus
           aegyptius ATCC 11116]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|332702842|ref|ZP_08422930.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552991|gb|EGJ50035.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 698

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 17  CVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECP 51
           CV+VCP D  + G +N   ++P EC  CG C   CP
Sbjct: 144 CVKVCPFDAIHMGPDNLPHVNPAECRACGKCVAVCP 179


>gi|310779216|ref|YP_003967549.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748539|gb|ADO83201.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 480

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y  T+ C  C   +C  VCP D     +    I P++CI CG+C   C   AI
Sbjct: 119 YYATDLCRNCIAHNCTNVCPRDAIVFDDGRAKIIPEKCIGCGLCAKSCDYYAI 171


>gi|300703372|ref|YP_003744974.1| 4fe-4S ferredoxin [Ralstonia solanacearum CFBP2957]
 gi|299071035|emb|CBJ42344.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum CFBP2957]
          Length = 719

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +   +  L++    C+ CG+CE  CP DAI
Sbjct: 591 CTLC--MACVSACPSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAI 637


>gi|257486634|ref|ZP_05640675.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 211

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|163794803|ref|ZP_02188773.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180076|gb|EDP64601.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 676

 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 5   VTENCILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  N  LC H        T C+++CP        + +++ P  C  CG+C   CP  AI 
Sbjct: 269 VNVNDSLCAHSRNRKTGCTRCLDLCPASAIAPAGDVVSVDPALCGGCGLCAGTCPTSAIT 328

Query: 57  ---PDTEPGLELWLKINSEY 73
              PD +   +  + + S Y
Sbjct: 329 YAYPDVQSVHQRIMALASAY 348



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V TE C LC    CV  CP     +  +   L    D C+ CG+C   CP   I
Sbjct: 517 VDTEGCTLC--LACVSACPASALQDNPDKPQLLFQEDACVQCGLCAATCPEKVI 568


>gi|78044791|ref|YP_360645.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996906|gb|ABB15805.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 187

 Score = 37.0 bits (84), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C+   C   CP    Y+ + F+ I+   CI C VC   CP  AI
Sbjct: 63  QCRQCEDAPCAHACPTGAIYQEDKFVRINEGNCIGCKVCTMVCPFGAI 110


>gi|327401016|ref|YP_004341855.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Archaeoglobus veneficus SNP6]
 gi|327316524|gb|AEA47140.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus veneficus SNP6]
          Length = 621

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + VT++C LC        CP      G+    I    CI CGVC   CP  AIKP
Sbjct: 567 FTVTDDCNLCMKCVTEFACPALYVINGKP--VIDAALCIACGVCSRICPEKAIKP 619


>gi|227113131|ref|ZP_03826787.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 626

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTSP 108


>gi|209527856|ref|ZP_03276346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrospira
          maxima CS-328]
 gi|209491713|gb|EDZ92078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrospira
          maxima CS-328]
          Length = 75

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV  CPV C +       +G ++  I  D CIDCG+C   CPV+ AI  +  P L+
Sbjct: 14 ADCVGACPVACIHPGPGKNTKGTDWYWIDFDTCIDCGICLQVCPVEGAIVAEERPELQ 71


>gi|150391494|ref|YP_001321543.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149951356|gb|ABR49884.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 157

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C  C+   C+++CP     + +  + I+ D+C  CG+CE  CP   I
Sbjct: 65  HCRHCQEAFCLQLCPTKAITQEKKVVVINDDKCTGCGICEQGCPYGVI 112


>gi|326383779|ref|ZP_08205464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197543|gb|EGD54732.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 460

 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKP 57
          L I P  C+DCG C   CPV AI P
Sbjct: 2  LYIDPSTCVDCGACVSACPVGAIVP 26


>gi|296119426|ref|ZP_06837984.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295967309|gb|EFG80576.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 358

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   + G+   L
Sbjct: 131 CKHCTNAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERREDGGVS--L 188

Query: 68  KINSEYATQWPN 79
           K N   A + P+
Sbjct: 189 KANHVEAQEVPD 200


>gi|188577211|ref|YP_001914140.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521663|gb|ACD59608.1| ferredoxin II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C+  CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 83  VAWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 137


>gi|16272978|ref|NP_439205.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae Rd KW20]
 gi|145632412|ref|ZP_01788147.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 3655]
 gi|229843915|ref|ZP_04464056.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 6P18H1]
 gi|260580135|ref|ZP_05847965.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|1169361|sp|P45003|DMSB_HAEIN RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|1574080|gb|AAC22705.1| anaerobic dimethyl sulfoxide reductase, chain B (dmsB) [Haemophilus
           influenzae Rd KW20]
 gi|144987319|gb|EDJ93849.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 3655]
 gi|229812909|gb|EEP48597.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 6P18H1]
 gi|260093419|gb|EEW77352.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|301169793|emb|CBW29394.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae 10810]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|325968088|ref|YP_004244280.1| Fe-S-cluster-containing hydrogenase components 1 [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707291|gb|ADY00778.1| Fe-S-cluster-containing hydrogenase components 1 [Vulcanisaeta
           moutnovskia 768-28]
          Length = 263

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  CK+  CV VCP    Y+   +  + I+ + CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFQCKNPACVTVCPTGAIYKRREDGVVVINYEVCIGCRYCENACPYGNIIFDP 129

Query: 60  EPGLE 64
             G+ 
Sbjct: 130 VEGVS 134


>gi|313894091|ref|ZP_07827657.1| putative ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441655|gb|EFR60081.1| putative ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
          Length = 75

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG     I    CI CG C   CPV A+K
Sbjct: 4  LKFTIDDTCVKCGA--CAEDCPVQCITEGMTRFNIGTG-CIGCGDCYSICPVGAVK 56


>gi|257439152|ref|ZP_05614907.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257198403|gb|EEU96687.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 528

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  ++CI CG C   CP +AI     P
Sbjct: 132 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQEKCIKCGRCATVCPYNAIVKTERP 188


>gi|256544643|ref|ZP_05472015.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256399532|gb|EEU13137.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 489

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI     P
Sbjct: 102 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVEACPYNAIAHTKRP 158


>gi|227111751|ref|ZP_03825407.1| nitrite reductase complex component [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 223

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
            +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  HSCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCLAACPYQVRFIHPQTK 147


>gi|161502318|ref|YP_001569430.1| putative polyferredoxin [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863665|gb|ABX20288.1| hypothetical protein SARI_00350 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 287

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 25/111 (22%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +   +I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CADVCPAQAFLLTQGQASIDMARCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                  L LW   +S+Y  ++ +I  ++ +    A + G+     +Y  P
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSAQWLMA-LAGLNLALRRYGEP 135


>gi|150402671|ref|YP_001329965.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033701|gb|ABR65814.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 167

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C+H   + C+EVCPV      +  + +  + CI CG+C   CP  AI
Sbjct: 42 VVCQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAI 90


>gi|68249608|ref|YP_248720.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 86-028NP]
 gi|68057807|gb|AAX88060.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 86-028NP]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|257064390|ref|YP_003144062.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792043|gb|ACV22713.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 450

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP---VDAIKPDTE 60
          C  VC      + E  + + PD+CI CG C   CP   ++A+ P  E
Sbjct: 32 CASVCTTGAISKSEAGVTVDPDKCIGCGTCATACPSCCLEAMNPSDE 78


>gi|254509887|ref|ZP_05121954.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533598|gb|EEE36586.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 631

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           LC H        ++C+++CP        + +AI P  C  CG C   CP  AI  +  P
Sbjct: 248 LCAHARAGQTGCSNCLDICPTGAITPAGDHVAIDPMICAGCGECSALCPSTAITYEDPP 306



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           +C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI+
Sbjct: 482 SCTLC--LSCVSLCPSGALIDNPDKPQLNFQQDACLQCGICRTICPEQAIE 530


>gi|168182073|ref|ZP_02616737.1| [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|182674775|gb|EDT86736.1| [Fe] hydrogenase [Clostridium botulinum Bf]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|310827326|ref|YP_003959683.1| hypothetical protein ELI_1734 [Eubacterium limosum KIST612]
 gi|308739060|gb|ADO36720.1| hypothetical protein ELI_1734 [Eubacterium limosum KIST612]
          Length = 223

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C E+C  D   EGE +  I+ + C +CG C   CPV+AI
Sbjct: 172 ITDACISC--GKCTELCYFDAVEEGEPY-KINGNRCDECGNCYHHCPVNAI 219


>gi|296533711|ref|ZP_06896262.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296265958|gb|EFH12032.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 666

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           LC H        T C+++CP      G+  + I  + C  CG C   CP  A + D  P
Sbjct: 273 LCAHARNKRTGCTRCLDLCPTGAITPGKESVQISAEICAGCGACAAICPTGAAQYDLPP 331



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 10/101 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    C  VCP   F    +   L+   D C+ CG+C   CP   I      
Sbjct: 513 VAVEGCTLC--LACTMVCPTGAFAANPDRPELSFLEDACVQCGLCATTCPEKVIS----- 565

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
            L   L +  E AT+      +    PS +K  G +   ++
Sbjct: 566 -LTPRLNLAPEAATRRVVKQEEPAICPSCSKAFGTRASIDR 605


>gi|270308716|ref|YP_003330774.1| reductive dehalogenase [Dehalococcoides sp. VS]
 gi|270154608|gb|ACZ62446.1| reductive dehalogenase [Dehalococcoides sp. VS]
          Length = 429

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI CG+C   CPV AI  + EP  ++W
Sbjct: 346 CIKCGICANICPVSAINSNPEPSWDIW 372


>gi|145640720|ref|ZP_01796303.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|148828211|ref|YP_001292964.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittGG]
 gi|145274646|gb|EDK14509.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.4-21]
 gi|148719453|gb|ABR00581.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittGG]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|158321164|ref|YP_001513671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158141363|gb|ABW19675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 362

 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 4  VVTENCIL-CKHTD----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ E C+L C   D    C ++CP D        +++  + CI CG+C+  CP  AI+
Sbjct: 18 ILQERCLLNCSSMDPCTKCRDICPKDAMLLNSGKISMDENLCIGCGLCKAVCPTQAIQ 75


>gi|104780426|ref|YP_606924.1| lectron transport complex protein RnfB [Pseudomonas entomophila
           L48]
 gi|95109413|emb|CAK14113.1| putative lectron transport complex protein RnfB [Pseudomonas
           entomophila L48]
          Length = 254

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +   EC  C +C P CPVD I
Sbjct: 81  CIGC--TKCIQACPVDAIVGASKLMHTVIAIECTGCDLCLPACPVDCI 126


>gi|255319168|ref|ZP_05360386.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262379300|ref|ZP_06072456.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
 gi|255303814|gb|EET83013.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262298757|gb|EEY86670.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
          Length = 266

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  V+ E+ CI C  T C+  CPVD     G+    +  D C  C +C P CPVD I
Sbjct: 83  MKAVIREDECIGC--TKCISACPVDAIIGSGKLMHTVLTDLCTGCELCIPPCPVDCI 137


>gi|192289827|ref|YP_001990432.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
 gi|192283576|gb|ACE99956.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
          Length = 607

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+T  C  C+   C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 544 VITSQCTACQ--SCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 601

Query: 59  T 59
           T
Sbjct: 602 T 602


>gi|67906754|gb|AAY82817.1| predicted iron-sulfur cluster-binding protein [uncultured bacterium
           MedeBAC46A06]
          Length = 672

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T+NC +C    CV  CP     +  +   L    D C+ CG+C   CP   I
Sbjct: 527 TDNCTIC--LSCVSACPAGALQDNPDAPQLLFREDACLQCGICMATCPEKVI 576


>gi|6644291|gb|AAF20994.1|AF208000_2 ferrodoxin [Pseudomonas syringae pv. syringae]
          Length = 38

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 68 KINSEYATQWPNITTKKESLPSAAKMDG 95
          ++N+E A  WPNIT KK+++P AA+ DG
Sbjct: 1  ELNAELAEIWPNITEKKDAMPDAAEWDG 28


>gi|152965569|ref|YP_001361353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151360086|gb|ABS03089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 376

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 200 CKHCTHAACLDVCPTGALFRTEFGTVVVQQDVCNGCGYCVSACPYGVI 247


>gi|224535649|ref|ZP_03676188.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522722|gb|EEF91827.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 486

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP    +  E+  A I  DECI CG+C   CP  AI
Sbjct: 114 INYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDECISCGICHKSCPYHAI 169


>gi|171914161|ref|ZP_02929631.1| putative anaerobic reductase component [Verrucomicrobium spinosum
           DSM 4136]
          Length = 534

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C    C E CPV  + + E    +    D+CI C  C  +CP D  K + + G
Sbjct: 108 VTTACHHCTDPACAEGCPVLAYEKDEETGIVRHLDDQCIGCSYCILKCPYDVPKYNPKRG 167

Query: 63  L 63
           +
Sbjct: 168 I 168


>gi|251799425|ref|YP_003014156.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. JDR-2]
 gi|247547051|gb|ACT04070.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. JDR-2]
          Length = 129

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          +  V  E CI C  + CV+VCP + F +GE+ + +     +C  C +CE  CP DA+
Sbjct: 2  IELVSEERCISC--SICVKVCPTNVFDKGEDGIPVIARQSDCQTCFICEVYCPADAL 56


>gi|84623478|ref|YP_450850.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367418|dbj|BAE68576.1| ferredoxin II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 142

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C+  CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 83  VAWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 137


>gi|83746719|ref|ZP_00943768.1| Formate hydrogenlyase subunit 6 [Ralstonia solanacearum UW551]
 gi|83726672|gb|EAP73801.1| Formate hydrogenlyase subunit 6 [Ralstonia solanacearum UW551]
          Length = 719

 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +   +  L++    C+ CG+CE  CP DAI
Sbjct: 591 CTLC--MACVSACPSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAI 637


>gi|269217312|ref|ZP_06161166.1| iron-sulfur cluster-binding protein [Slackia exigua ATCC 700122]
 gi|269129449|gb|EEZ60534.1| iron-sulfur cluster-binding protein [Slackia exigua ATCC 700122]
          Length = 259

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPG 62
             E+C  CK   C+  CPV   Y      A  +  D CI CG+C   CP +  + D   G
Sbjct: 153 TVEHCKQCKEAACMRNCPVHAIYADPKTGARVVDTDACIGCGLCHEACPWNMPQIDPASG 212

Query: 63  LELWLKINSEYATQWPNITTK 83
                      A Q PN   K
Sbjct: 213 KSTKCIACGRCAVQCPNGAIK 233


>gi|239927159|ref|ZP_04684112.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces ghanaensis
           ATCC 14672]
          Length = 235

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  +PD
Sbjct: 143 MSSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDQRPD 200


>gi|254500510|ref|ZP_05112661.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222436581|gb|EEE43260.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 245

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    CV VCP    Y+   +  + ++ D CI CG+C   CP  A + D   G+
Sbjct: 77  KSCLHCDDAPCVTVCPTGASYKRREDGIVLVNEDACIGCGLCAWACPYGARELDQAEGV 135


>gi|197120163|ref|YP_002140590.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC/FeS domain-containing protein
          [Geobacter bemidjiensis Bem]
 gi|197089523|gb|ACH40794.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC and FeS domain-containing protein
          [Geobacter bemidjiensis Bem]
          Length = 759

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +T++C  C    CV  CPV      +++  I  + CI CG C   CP  A
Sbjct: 7  ITDHCRKC--YSCVRSCPVKAIKVEKSYTEIIAERCIGCGNCMSHCPQHA 54


>gi|322831881|ref|YP_004211908.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rahnella sp. Y9602]
 gi|321167082|gb|ADW72781.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rahnella sp. Y9602]
          Length = 209

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      N + ++   C+ C +C   CP  AI       L++ + 
Sbjct: 57  CHQCEDAPCAQVCPVNAITRENNAIHLNESLCVSCKLCGLACPFGAITFSGSTPLDMPVD 116

Query: 69  INSEYATQWPN 79
            N+  A   P 
Sbjct: 117 CNTSKALPAPR 127


>gi|221194389|ref|ZP_03567446.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
 gi|221185293|gb|EEE17683.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
          Length = 532

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + V+  C  C    C E+CP       +    I  ++CI CG+CE  CP  AI     P 
Sbjct: 123 FRVSNACQGCLAHPCREICPKGAISFVDKKAFIDQEKCIKCGMCEKVCPYHAILHHLRPC 182

Query: 63  LE 64
            E
Sbjct: 183 AE 184


>gi|170756783|ref|YP_001782925.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
 gi|169121995|gb|ACA45831.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|134045120|ref|YP_001096606.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132662745|gb|ABO34391.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 167

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C+H   + C+EVCPV      +  + +  + CI CG+C   CP  AI
Sbjct: 42 VVCQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAI 90


>gi|288561161|ref|YP_003424647.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
 gi|288543871|gb|ADC47755.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
          Length = 410

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            + CI C    CV+ CP D      +     P+ C  CG+C   CPVDAI  D E G   
Sbjct: 211 ADACIGCNS--CVDACPGDFISPKSDLTVALPEACAACGLCVNVCPVDAIDLDVEYGAS- 267

Query: 66  WLKINSEYATQW 77
             K +S     W
Sbjct: 268 --KFDSTEGICW 277



 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 16/59 (27%)

Query: 9   CILCKHTDCVEVCPVDCF------------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C++C+   CV++CPVD               E E   A++ D+C  CGVC  ECPVDAI
Sbjct: 104 CVMCQK--CVDICPVDVIGVPGIKEPASRVIEPEG--AVYIDDCKGCGVCVAECPVDAI 158


>gi|229846080|ref|ZP_04466192.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 7P49H1]
 gi|229811084|gb|EEP46801.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 7P49H1]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|74316589|ref|YP_314329.1| DMSO reductase subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|74056084|gb|AAZ96524.1| DMSO reductase chain B [Thiobacillus denitrificans ATCC 25259]
          Length = 231

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+  DCV VCP    Y+   +  + I  D+C+ C  C   CP  A + D   G
Sbjct: 71  SCMHCEDADCVTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGARELDRSSG 127


>gi|15603620|ref|NP_246694.1| DmsB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722171|gb|AAK03839.1| DmsB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 206

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C +  CV VCP    ++ E+ F+ ++   CI C  C   CP DA + D 
Sbjct: 60  FAYYLSISCNHCDNPACVSVCPTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDA 119

Query: 60  EPG 62
             G
Sbjct: 120 MKG 122


>gi|51246231|ref|YP_066115.1| hydrogenase [Desulfotalea psychrophila LSv54]
 gi|50877268|emb|CAG37108.1| related to hydrogenase [Desulfotalea psychrophila LSv54]
          Length = 483

 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C++ CP D     +    I  + CI+CG C   CP  AI
Sbjct: 113 YEVTNACQGCLAQACIQSCPKDAITMVQGKSHIDSNLCINCGKCLKVCPYHAI 165


>gi|304312861|ref|YP_003812459.1| hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
 gi|301798594|emb|CBL46824.1| Hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
          Length = 296

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           +  +  + CI C  T C++ CPVD        +  +  D+C  C +C   CPVD I    
Sbjct: 85  LAVIREDECIGC--TKCIQACPVDAILGAAQLMHTVIGDQCTGCNLCVEPCPVDCIDMVA 142

Query: 60  EPGLEL 65
            P L +
Sbjct: 143 MPELPM 148


>gi|298530425|ref|ZP_07017827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509799|gb|EFI33703.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfonatronospira thiodismutans ASO3-1]
          Length = 99

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 16 DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           CV+VCP   F  GE   + + P  C++CG C   CP  AIK    PG+     I + + 
Sbjct: 25 SCVQVCPHRVFDVGEQKAVLLDPGGCMECGACALNCPAGAIK--VRPGVGCAQAILNSWL 82

Query: 75 TQWPNI 80
             P +
Sbjct: 83 AGMPVL 88


>gi|254452377|ref|ZP_05065814.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 238]
 gi|198266783|gb|EDY91053.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 238]
          Length = 268

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D E
Sbjct: 85  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDAE 140


>gi|194289253|ref|YP_002005160.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193223088|emb|CAQ69093.1| FERREDOXIN [4FE-4S] PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 273

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD      +    + PD C  C +C P CPVD I
Sbjct: 88  CIGC--TLCIQACPVDAIAGAAKQMHTVIPDLCTGCDLCVPPCPVDCI 133


>gi|189467136|ref|ZP_03015921.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
 gi|189435400|gb|EDV04385.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
          Length = 486

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP    +  E+  A I  DECI CG+C   CP  AI
Sbjct: 114 INYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDECISCGICHKSCPYHAI 169


>gi|148381245|ref|YP_001255786.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|148290729|emb|CAL84860.1| putative iron-dependent hydrogenase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 498

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 105 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 163


>gi|146303119|ref|YP_001190435.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera sedula DSM 5348]
 gi|145701369|gb|ABP94511.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Metallosphaera sedula DSM 5348]
          Length = 87

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C  C    CV+VCP   +    + + +H + C++CG     CP  AI
Sbjct: 22 VNLEVCRTCAEKPCVKVCPAGTYERSGDVIEVHYERCLECGAALVACPFGAI 73


>gi|11498785|ref|NP_070014.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649398|gb|AAB90058.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 131

 Score = 37.0 bits (84), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    CV +CP +  Y  G+  +AI+ ++C+ CG C   CP  A+
Sbjct: 80  EKCVHCGA--CVSICPTEAIYINGDKRVAINTEKCVHCGSCVKVCPTRAL 127


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 8   NCILCKH-TDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  +CK  + C  VCPV     E +    I+PD+CI CG C   CP  A+K
Sbjct: 572 DATVCKGCSKCSRVCPVGAISGEIKKPFTINPDKCIKCGACVEACPFKAVK 622


>gi|237796742|ref|YP_002864294.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
 gi|229262438|gb|ACQ53471.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|193077843|gb|ABO12720.2| putative 4Fe-4S ferredoxin [Acinetobacter baumannii ATCC 17978]
          Length = 87

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCDM--CLPECPNTAIFEGSKVYQIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|126460737|ref|YP_001057015.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum calidifontis JCM 11548]
 gi|126250458|gb|ABO09549.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum calidifontis JCM 11548]
          Length = 96

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLELWL 67
          C  C+   C  +CP  C+ +  + + +  + C++CG C   CP   I+ +    G+ +W 
Sbjct: 34 CRKCEKKPCTYMCPAKCYVQQGDIIVLSTEACVECGTCRVVCPHGNIEWNYPRSGMGIWY 93

Query: 68 KIN 70
          +  
Sbjct: 94 RFT 96


>gi|126175973|ref|YP_001052122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999178|gb|ABN63253.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 188

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  ++IH ++C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPYKVRFMNPETK 114


>gi|262376638|ref|ZP_06069866.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308348|gb|EEY89483.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 87

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  Y GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCD--VCEPVCPNEAIYMGELIYEIHPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKES 86
          I  D        ++   +   ++  +T +K S
Sbjct: 59 IPLDPN-----HVETQEQLQAKYEKLTAQKTS 85


>gi|224540171|ref|ZP_03680710.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518205|gb|EEF87310.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 600

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPV 52
          +T+  + C    C +VC  D        EG  +  +  D+C DCG+CE  CP+
Sbjct: 4  ITDKAMCCGCNACGDVCAHDAITFRTDIEGFWYPEVDKDKCTDCGLCERVCPI 56


>gi|222053655|ref|YP_002536017.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221562944|gb|ACM18916.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. FRC-32]
          Length = 754

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +TE C  C    CV  CPV      + F  I  + CI CG C   CP  A
Sbjct: 7  LTEKCRKC--YSCVRSCPVKAIKVEKTFTEIIFERCIGCGNCLSNCPQHA 54


>gi|254427723|ref|ZP_05041430.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
 gi|196193892|gb|EDX88851.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
          Length = 194

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 108 VAYIREDECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVEPCPVDCI 161


>gi|168179051|ref|ZP_02613715.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|182670135|gb|EDT82111.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|315187127|gb|EFU20884.1| hydrogenase large subunit domain protein [Spirochaeta thermophila
           DSM 6578]
          Length = 527

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VTE C  C    C   CP           +I  + CI+CG+CE  CP  AI
Sbjct: 158 FMVTEVCQGCVARPCKTGCPKGAISIVRGRASIDYERCINCGLCERVCPFHAI 210



 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 8   NCILCKHT-----------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           NC LC+              C EVCPV    +GE+ +A I    CI CG C   CP  A
Sbjct: 197 NCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKACPFGA 255


>gi|197286794|ref|YP_002152666.1| anaerobic reductase component B [Proteus mirabilis HI4320]
 gi|227355015|ref|ZP_03839426.1| anaerobic reductase component B [Proteus mirabilis ATCC 29906]
 gi|194684281|emb|CAR45833.1| putative anaerobic reductase component B [Proteus mirabilis HI4320]
 gi|227164802|gb|EEI49649.1| anaerobic reductase component B [Proteus mirabilis ATCC 29906]
          Length = 213

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C    CV+ CP    +  EG+  + +  D+C+ CG C   CP  A + D
Sbjct: 70  FAYTLSISCNHCDDPICVKNCPTTAMHKREGDGIVMVDTDKCVGCGACAWSCPYGAPQMD 129

Query: 59  TE 60
            E
Sbjct: 130 PE 131


>gi|319794270|ref|YP_004155910.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315596733|gb|ADU37799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 692

 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV  CP     + +    L      C+ CG+CE  CP DA+
Sbjct: 561 EKCTLC--LACVSACPSGALLDSQTAPQLRFIEKNCVQCGLCEITCPEDAV 609


>gi|301062599|ref|ZP_07203231.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300443279|gb|EFK07412.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 249

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
           NC+ C+   CVE CP    Y+   +  + I    CI CG C P CP  A
Sbjct: 60  NCMQCEKPTCVEACPTGATYKDPLDGTVRIDRRLCIGCGQCLPACPYGA 108


>gi|289191512|ref|YP_003457453.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
 gi|288937962|gb|ADC68717.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
          Length = 238

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y + +N C LC    C+ VCP     + ++F+ I   +C+ CG C+  CP +AI    E 
Sbjct: 144 YAIDKNKCKLC--LKCINVCPNGAIAKRDDFVEISLPKCLGCGNCKKVCPYNAIIEGKEI 201

Query: 62  GLELWLKINSE 72
            + +  KI++E
Sbjct: 202 KMRVR-KIDAE 211


>gi|269216392|ref|ZP_06160246.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Slackia exigua ATCC 700122]
 gi|269130651|gb|EEZ61729.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Slackia exigua ATCC 700122]
          Length = 170

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 12 CKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C+H D   C+EVCPV    + E+  + +  D CI C  C   CP DA   D + G+
Sbjct: 42 CQHCDTPSCIEVCPVGATSKREDGVVVVDKDICIGCASCVSACPYDARAIDADAGV 97


>gi|184157307|ref|YP_001845646.1| NADH:ubiquinone oxidoreductase subunit RnfB [Acinetobacter
           baumannii ACICU]
 gi|332873434|ref|ZP_08441387.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
 gi|183208901|gb|ACC56299.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Acinetobacter baumannii ACICU]
 gi|322507192|gb|ADX02646.1| RnfB [Acinetobacter baumannii 1656-2]
 gi|323517170|gb|ADX91551.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738380|gb|EGJ69254.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
          Length = 263

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|158522522|ref|YP_001530392.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158511348|gb|ABW68315.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 672

 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           CV  CP      GEN L  +  ++C  CG CE  CP   IK
Sbjct: 149 CVRACPFGALTMGENGLPVVDREKCTGCGTCERVCPKHIIK 189


>gi|50084303|ref|YP_045813.1| putative iron-sulfur protein [Acinetobacter sp. ADP1]
 gi|49530279|emb|CAG67991.1| conserved hypothetical protein; putative iron-sulfur protein
           [Acinetobacter sp. ADP1]
          Length = 250

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK-- 56
           M  ++ E+ CI C  T C+  CPVD     G+    +  D C  C +C P CPVD I   
Sbjct: 69  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHTVLTDLCTGCELCIPPCPVDCIDLV 126

Query: 57  PDTEP 61
            D EP
Sbjct: 127 EDREP 131


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + +T+ CI C  T C +VCP +      +    I+ D CI CG C   C  +AIK
Sbjct: 542 IQFTITDKCIGC--TACAKVCPTEAILGRVKEKHYIYQDRCIKCGACYNACRFNAIK 596


>gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 436

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T++C  C  T C+ VC VD    +  +   I  D+CI CG C   C  DAI
Sbjct: 380 VKYYITDDCKGC--TKCMNVCAVDAINGQVRSRHIIDADKCIRCGACRKICSFDAI 433


>gi|307718915|ref|YP_003874447.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
 gi|306532640|gb|ADN02174.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
          Length = 527

 Score = 37.0 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VTE C  C    C   CP           +I  + CI+CG+CE  CP  AI
Sbjct: 158 FMVTEVCQGCVARPCKTGCPRGAISIVRGRASIDYERCINCGLCERVCPFHAI 210



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 8   NCILCKHT-----------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           NC LC+              C EVCPV    +GE+ +A I    CI CG C   CP  A
Sbjct: 197 NCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKACPFGA 255


>gi|290475910|ref|YP_003468805.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related
           [Xenorhabdus bovienii SS-2004]
 gi|289175238|emb|CBJ82041.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Xenorhabdus bovienii SS-2004]
          Length = 180

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|254503333|ref|ZP_05115484.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439404|gb|EEE46083.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 652

 Score = 37.0 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 11  LCKHTD--------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H+         C+++CP        + + I P  C  CG+C   CP  A+  D    
Sbjct: 271 LCAHSRAQKTGCNRCLDLCPTGAITPAGDHITIDPMVCAGCGMCSAACPSGAVSYDAPTP 330

Query: 63  LELWLKINSEYATQW 77
             ++ +I +  AT W
Sbjct: 331 QHVFKRIET-LATTW 344


>gi|213612664|ref|ZP_03370490.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 119

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 24/91 (26%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA---IKP-------DTEPG---- 62
           C +VCP   F   +  ++I    CI CG C   CPVDA   IKP       DT  G    
Sbjct: 29  CTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAITDIKPVKRFVQGDTLVGPFSL 88

Query: 63  -------LELWLKINSEYATQWPNITTKKES 86
                  L LW   +S+Y  ++ +I  ++ +
Sbjct: 89  QAPTVDELLLW---HSQYGIRFIDIAVERSA 116


>gi|205355049|ref|YP_002228850.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274830|emb|CAR39890.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
          Length = 223

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKP--DTE 60
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P   T 
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTA 149

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
              +   KIN +   Q   +    ES P+ A M G
Sbjct: 150 DKCDFCRKINLKAGKQPACV----ESCPTKALMFG 180


>gi|89896469|ref|YP_519956.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335917|dbj|BAE85512.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 206

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI-----KPDTEPG 62
           C  C++  CV+VCPV   Y+ E   + I+ D CI C  C   CP +A      +P  +PG
Sbjct: 66  CQHCENAACVKVCPVGATYKDELGRVVINYDRCIGCRFCMAACPYNARVFNWEEPVRDPG 125

Query: 63  L 63
            
Sbjct: 126 F 126


>gi|293608863|ref|ZP_06691166.1| electron transport complex [Acinetobacter sp. SH024]
 gi|292829436|gb|EFF87798.1| electron transport complex [Acinetobacter sp. SH024]
          Length = 263

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y +T++C  C  T C+ VC VD    +  +   I  D+CI CG C   C  DAI
Sbjct: 557 VKYYITDDCKGC--TKCMNVCAVDAINGQVRSRHIIDADKCIRCGACRKICSFDAI 610


>gi|226327475|ref|ZP_03802993.1| hypothetical protein PROPEN_01346 [Proteus penneri ATCC 35198]
 gi|225204001|gb|EEG86355.1| hypothetical protein PROPEN_01346 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA--IK 56
             Y ++ +C  C    CV+ CP    ++  G+  + +  D+C+ CG C   CP  A  + 
Sbjct: 70  FAYTLSISCNHCDDPICVKNCPTTAMHKRKGDGIVMVDTDKCVGCGACAWSCPYGAPQMN 129

Query: 57  PDTEPG------LELWLKINSEYAT 75
           P+T+        ++L  K+N+ + +
Sbjct: 130 PETKQMSKCDFCIDLQQKVNNRFVS 154


>gi|254439365|ref|ZP_05052859.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
 gi|198254811|gb|EDY79125.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
          Length = 242

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D E
Sbjct: 58  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDAE 113


>gi|147678456|ref|YP_001212671.1| hypothetical protein PTH_2121 [Pelotomaculum thermopropionicum SI]
 gi|146274553|dbj|BAF60302.1| Uncharacterized Fe-S center protein [Pelotomaculum
           thermopropionicum SI]
          Length = 367

 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPG 62
           E C  C+   C + CP            +  ++CI CG C   CPV AI  +  TEPG
Sbjct: 193 EKCTGCER--CSQWCPAQAIGVRGRVSVVDENKCIGCGECTVTCPVHAISVNWKTEPG 248


>gi|117625117|ref|YP_854105.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli APEC O1]
 gi|218559878|ref|YP_002392791.1| oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli
           S88]
 gi|227888433|ref|ZP_04006238.1| 4Fe-4S binding protein [Escherichia coli 83972]
 gi|300980322|ref|ZP_07174976.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301049332|ref|ZP_07196302.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|306812213|ref|ZP_07446411.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli NC101]
 gi|115514241|gb|ABJ02316.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli APEC O1]
 gi|218366647|emb|CAR04401.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli S88]
 gi|227834702|gb|EEJ45168.1| 4Fe-4S binding protein [Escherichia coli 83972]
 gi|281179891|dbj|BAI56221.1| putative oxidoreductase [Escherichia coli SE15]
 gi|294493750|gb|ADE92506.1| 4Fe-4S binding protein [Escherichia coli IHE3034]
 gi|300298931|gb|EFJ55316.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300409330|gb|EFJ92868.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|305854251|gb|EFM54689.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli NC101]
 gi|307554862|gb|ADN47637.1| putative electron transport protein YgfS [Escherichia coli ABU
           83972]
 gi|307625542|gb|ADN69846.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli UM146]
 gi|315289453|gb|EFU48848.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|315293883|gb|EFU53235.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|323951676|gb|EGB47551.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957394|gb|EGB53116.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 162

 Score = 37.0 bits (84), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+     S NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASSENP 161


>gi|325676247|ref|ZP_08155926.1| formate dehydrogenase beta subunit [Rhodococcus equi ATCC 33707]
 gi|325552808|gb|EGD22491.1| formate dehydrogenase beta subunit [Rhodococcus equi ATCC 33707]
          Length = 315

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI----KPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I     P  +
Sbjct: 126 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQNDICNGCGYCIPACPYGVIDRRDGPAGD 185

Query: 61  PGLELWLK 68
           P + L  K
Sbjct: 186 PAVGLAQK 193


>gi|197286375|ref|YP_002152247.1| hydrogenase-4 component A [Proteus mirabilis HI4320]
 gi|227357429|ref|ZP_03841783.1| hydrogenase-4 component A [Proteus mirabilis ATCC 29906]
 gi|194683862|emb|CAR45000.1| hydrogenase-4 component A [Proteus mirabilis HI4320]
 gi|227162387|gb|EEI47387.1| hydrogenase-4 component A [Proteus mirabilis ATCC 29906]
          Length = 206

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +LC+H +   C  VCPV+     +N + ++   CI C +C   CP  AI P
Sbjct: 49 MLCRHCEDAPCASVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAITP 99


>gi|153938019|ref|YP_001392647.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|152933915|gb|ABS39413.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|295320632|gb|ADG01010.1| [Fe] hydrogenase [Clostridium botulinum F str. 230613]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|170741268|ref|YP_001769923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195542|gb|ACA17489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 670

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C LC    CV  CP     +  +   L+     C+ CG+C   CP D I    EP L
Sbjct: 521 TEACTLCHA--CVGACPTGALSDDPDRPLLSFSESLCVQCGLCAATCPEDVIT--LEPRL 576

Query: 64  EL 65
           + 
Sbjct: 577 DF 578



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        + C++VCP        + +A+ P  C  CG C   CP  A      P 
Sbjct: 272 LCAHARSRITGCSRCLDVCPTGAIAPAGDHVAVDPFVCAGCGSCASVCPTGAAAATLPPA 331


>gi|153932223|ref|YP_001385620.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|153936790|ref|YP_001389026.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
 gi|152928267|gb|ABS33767.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|152932704|gb|ABS38203.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|26249298|ref|NP_755338.1| putative electron transport protein ygfS [Escherichia coli CFT073]
 gi|91212263|ref|YP_542249.1| putative electron transport protein YgfS [Escherichia coli UTI89]
 gi|237706472|ref|ZP_04536953.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|26109705|gb|AAN81908.1|AE016765_310 Putative electron transport protein ygfS [Escherichia coli CFT073]
 gi|91073837|gb|ABE08718.1| putative electron transport protein YgfS [Escherichia coli UTI89]
 gi|226899512|gb|EEH85771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 163

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 115

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+     S NP
Sbjct: 116 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASSENP 162


>gi|20089203|ref|NP_615278.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
 gi|19914078|gb|AAM03758.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
          Length = 346

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query: 14  HTDCVEVCPVDCFY-----EGENFLAI--HPDECIDCGVCEPECPVDAI 55
           HT C++VCP +  +      GE    I   PD CI CG C   CPVDAI
Sbjct: 185 HT-CIDVCPANAIFNKKAKSGERVEKITHRPDACIYCGACAVSCPVDAI 232


>gi|325121371|gb|ADY80894.1| putative iron-sulfur protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 263

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|307596266|ref|YP_003902583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551467|gb|ADN51532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 445

 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CV  CP +      N + I+   CI+CG+C   CP  A+
Sbjct: 118 ECVNACPANAISIVNNRVTINESACIECGLCVSRCPTGAL 157


>gi|298530775|ref|ZP_07018177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510149|gb|EFI34053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 307

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C   +C + CP            +  D C+ CGVC   CPV  +K   +      
Sbjct: 239 ELCIKC--GECAQACPFQAIAMSREGPVVSQDLCMGCGVCVSRCPVQGLKLKRQKDKSPP 296

Query: 67  LKINS 71
           L++NS
Sbjct: 297 LEVNS 301


>gi|157737741|ref|YP_001490425.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018]
 gi|157699595|gb|ABV67755.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018]
          Length = 557

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           NC LC    CV  C VD  +  E +  L I+P  C  CG CE  CP       T+  +EL
Sbjct: 428 NCTLC--LSCVGACNVDALFANEADFTLRINPSLCTACGYCEVSCPEADCLTITKDEIEL 485

Query: 66  ---WLKIN 70
              W K N
Sbjct: 486 QPSWFKEN 493


>gi|157373499|ref|YP_001472099.1| anaerobic dimethyl sulfoxide reductase, subunit B [Shewanella
           sediminis HAW-EB3]
 gi|157315873|gb|ABV34971.1| anaerobic dimethyl sulfoxide reductase, subunit B [Shewanella
           sediminis HAW-EB3]
          Length = 205

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y  + +C  C    C + CP    ++   +  + IH D CI C  CE  CP DA + D
Sbjct: 58  FAYYTSISCNHCDTPACTKACPTGAMHKRSEDGLVMIHDDICIGCSSCEQACPYDAPQLD 117

Query: 59  TEPG 62
              G
Sbjct: 118 EARG 121


>gi|83591098|ref|YP_431107.1| thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
 gi|83574012|gb|ABC20564.1| Thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
          Length = 631

 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  +NC+ C++  C+++ CP   F +G     I P  C  CG+C   CP +AI+   E
Sbjct: 575 VSPDNCLSCRY--CLDLGCPAISFSDGHG--VIDPVLCNGCGLCTQVCPGEAIRKAGE 628


>gi|288932304|ref|YP_003436364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894552|gb|ADC66089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 127

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           TE C+ C    C+ VCP   F  GE+  + ++  +CI CG C   CP+ A++
Sbjct: 75  TEKCVDCGA--CISVCPTGVFERGEDDRIVVNEVKCIRCGFCVGVCPLKALR 124


>gi|215484255|ref|YP_002326482.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260555960|ref|ZP_05828180.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332853651|ref|ZP_08434881.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332870830|ref|ZP_08439475.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
 gi|193076747|gb|ABO11457.2| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
 gi|213987984|gb|ACJ58283.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260410871|gb|EEX04169.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332728475|gb|EGJ59849.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332731931|gb|EGJ63209.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
          Length = 263

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|58581545|ref|YP_200561.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426139|gb|AAW75176.1| ferredoxin II [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 156

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++V  +CI C  T C+  CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 97  VAWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAPLCTGCELCLPACPVDCIE 151


>gi|125972856|ref|YP_001036766.1| hydrogenase large subunit-like protein [Clostridium thermocellum
           ATCC 27405]
 gi|256005726|ref|ZP_05430681.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281417055|ref|ZP_06248075.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|125713081|gb|ABN51573.1| hydrogenase large subunit-like protein [Clostridium thermocellum
           ATCC 27405]
 gi|255990299|gb|EEU00426.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281408457|gb|EFB38715.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|316940906|gb|ADU74940.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 1313]
          Length = 448

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 3   YVVTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT + + CK  T+C++ CP +     ++   I  + CIDCG C   CP  A K  T+P
Sbjct: 6   HSVTLDEVKCKGCTNCIKRCPTEAIRVRKSKARIINERCIDCGECIRVCPYHAKKAITDP 65

Query: 62  GLELWLKINSEYATQWPNITTKKESLPS------AAKMDGVKQKYE 101
            + L      + A   P++  + +S PS      A KM G    +E
Sbjct: 66  -IGLINDYKYKVAIPAPSLYGQLKSAPSRDHILTALKMCGFDDVFE 110


>gi|315637523|ref|ZP_07892731.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri
           JV22]
 gi|315478182|gb|EFU68907.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri
           JV22]
          Length = 557

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           NC LC    CV  C VD  +  E +  L I+P  C  CG CE  CP       T+  +EL
Sbjct: 428 NCTLC--LSCVGACNVDALFANEADFTLRINPSLCTACGYCEVSCPEADCLTITKDEIEL 485

Query: 66  ---WLKIN 70
              W K N
Sbjct: 486 QPSWFKEN 493


>gi|302335002|ref|YP_003800209.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
 gi|301318842|gb|ADK67329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
          Length = 423

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C++VCPVD    GE+ + +  D C  CG+C   CP +A+
Sbjct: 72  CLDVCPVDAIEIGESSVRV-ADGCRKCGLCTMVCPTEAL 109


>gi|300785105|ref|YP_003765396.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
 gi|299794619|gb|ADJ44994.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
          Length = 346

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I  +PD
Sbjct: 161 MASDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIDRRPD 218


>gi|222480730|ref|YP_002566967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453632|gb|ACM57897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 109

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLA-IHPDECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F         E E   + +  D+CIDC +C   CPV
Sbjct: 37  THVAVDFDICLADGACLEDCPVDVFEWVDTPGHPESERKASPVDEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPGLE 64
           DAI  D +PG E
Sbjct: 97  DAI--DVDPGRE 106


>gi|303257710|ref|ZP_07343722.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302859680|gb|EFL82759.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 192

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           C  C++  CV+ CP    Y  EN L  + PD+C+ C  C   CP DA
Sbjct: 67  CQQCENAPCVKTCPFGANYYDENGLVRNDPDKCVGCNYCIASCPYDA 113


>gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
          Length = 926

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C+EVCP DC    + +++ I   +C  CG+C  ECP +AI
Sbjct: 334 CLEVCPEDCIEAKKGYISMIDEFDCTKCGICIDECPNNAI 373


>gi|262276174|ref|ZP_06053983.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
 gi|262219982|gb|EEY71298.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
          Length = 570

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V T +C LC    CV VCP            +     +C+ CG+CE  CP   I      
Sbjct: 433 VKTHDCTLC--MGCVAVCPTGALSSIGSRPGITFREQDCVQCGLCESSCPESVIT----- 485

Query: 62  GLELWLKINSEYATQ 76
            LE     NSE   Q
Sbjct: 486 -LEPRFNWNSEQRQQ 499



 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDTEPGLELWLKINS 71
           T C++ CP +        + I+P  C   G C   CP +AI    PD E        +  
Sbjct: 212 TRCIDACPAEALSTINQTITINPYLCQGIGSCATVCPTEAISYALPDPENTQHFVFDLIQ 271

Query: 72  EYATQWPNITT 82
            Y  Q   + T
Sbjct: 272 HYRQQGGEVPT 282


>gi|253570623|ref|ZP_04848031.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
 gi|251839572|gb|EES67655.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
          Length = 387

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 8  NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVD--AIKPDT 59
          NC  C    C EVCP  C       +G  +  +    CIDCG CE  CP     IK DT
Sbjct: 11 NCSGCNA--CAEVCPKHCIEMVPDKKGFFYPKVDAVTCIDCGACEKVCPFQDGNIKLDT 67


>gi|226950727|ref|YP_002805818.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|226844550|gb|ACO87216.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|322807610|emb|CBZ05185.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 497

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162


>gi|221636035|ref|YP_002523911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157849|gb|ACM06967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
          Length = 510

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV +CP    F   +  +    D CI C  C   CP DA+  D
Sbjct: 58  CNHCDDAPCVTICPTKALFRRPDGIVDFDADRCIGCKSCMQACPYDALYID 108


>gi|162456775|ref|YP_001619142.1| putative anaerobic reductase component [Sorangium cellulosum 'So ce
           56']
 gi|161167357|emb|CAN98662.1| putative anaerobic reductase component [Sorangium cellulosum 'So ce
           56']
          Length = 580

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C+  CPV   YE +    I     D+CI C  C   CP DA K + E 
Sbjct: 127 VTTACHHCLDPACMSGCPVKA-YEKDPITGIVKHLDDQCIGCQYCILMCPYDAPKFNAER 185

Query: 62  GL 63
           G+
Sbjct: 186 GI 187


>gi|310780615|ref|YP_003968946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309749938|gb|ADO84598.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 104

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           + CI C+   CVEVCP +     + F A    P EC DC  C  ECPV AI
Sbjct: 7  AKRCIGCRL--CVEVCPGNLISLDKKFKAEIYDPRECWDCTACMKECPVQAI 56


>gi|22298281|ref|NP_681528.1| hypothetical protein tlr0739 [Thermosynechococcus elongatus BP-1]
 gi|22294460|dbj|BAC08290.1| tlr0739 [Thermosynechococcus elongatus BP-1]
          Length = 342

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CP +     E    +  D C  CG C P CP   I  D +P +
Sbjct: 105 CERICPAEAIRFHEQVQGVVRDRCYGCGRCLPLCPWGLISTDEQPAV 151


>gi|332971171|gb|EGK10135.1| NADH-quinone oxidoreductase subunit I [Psychrobacter sp.
           1501(2011)]
          Length = 182

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVACISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 117

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 118 LTPDFELG---------EYVRQ--NLVYEKEHL 139


>gi|332305736|ref|YP_004433587.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173065|gb|AEE22319.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 188

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 110 VAYIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVDPCPVDCI 163


>gi|257791615|ref|YP_003182221.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257475512|gb|ACV55832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 206

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCPV   Y+ +   + IH D+CI C +C   CP +A
Sbjct: 65  CQHCENPACLKVCPVGATYKDDMGRVEIHYDKCIGCRICMAACPYNA 111


>gi|171058834|ref|YP_001791183.1| putative glutamate synthase (NADPH) small subunit [Leptothrix
           cholodnii SP-6]
 gi|170776279|gb|ACB34418.1| Glutamate synthase (NADH) [Leptothrix cholodnii SP-6]
          Length = 571

 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           NC  C   +C  VCP +   +   G  F  I+ D C  CG+C  ECP  AI+   E G
Sbjct: 517 NCFECD--NCYGVCPDNAVIKLGPGRRF-EINLDYCKGCGMCAAECPCGAIEMVAETG 571


>gi|169796778|ref|YP_001714571.1| hypothetical protein ABAYE2765 [Acinetobacter baumannii AYE]
 gi|213156829|ref|YP_002318490.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
 gi|239502943|ref|ZP_04662253.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB900]
 gi|301345598|ref|ZP_07226339.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB056]
 gi|301510039|ref|ZP_07235276.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB058]
 gi|301597671|ref|ZP_07242679.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB059]
 gi|169149705|emb|CAM87596.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213055989|gb|ACJ40891.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
          Length = 263

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|170717615|ref|YP_001784697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haemophilus somnus 2336]
 gi|168825744|gb|ACA31115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haemophilus
           somnus 2336]
          Length = 245

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           LC H D   CV+VCPV   Y+ ++  + I    CI C  C   CP DA   ++E
Sbjct: 98  LCNHCDNPPCVQVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSE 151


>gi|284929331|ref|YP_003421853.1| NADH:ubiquinone oxidoreductase chain I-like protein
          [cyanobacterium UCYN-A]
 gi|284809775|gb|ADB95472.1| NADH:ubiquinone oxidoreductase chain I-like protein
          [cyanobacterium UCYN-A]
          Length = 80

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 15 TDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPV-DAIKPDTEP 61
           DC E CPV C +EG        ++  I    CIDCG+C   CPV  AI  +  P
Sbjct: 20 ADCAEACPVACIHEGPGKNLKGTSWYWIDFSVCIDCGICLQVCPVKGAIIAEERP 74


>gi|254284151|ref|ZP_04959119.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
 gi|219680354|gb|EED36703.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
          Length = 200

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 113 VAYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIVDECTGCDLCVEPCPVDCI 166


>gi|197285613|ref|YP_002151485.1| NADH dehydrogenase subunit I [Proteus mirabilis HI4320]
 gi|227356116|ref|ZP_03840506.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906]
 gi|226737407|sp|B4EZC3|NUOI_PROMH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|194683100|emb|CAR43657.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis HI4320]
 gi|227163761|gb|EEI48673.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906]
          Length = 180

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C      E E+      F  I+   CI CG+CE  CP  A++
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|89074883|ref|ZP_01161333.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
 gi|89049280|gb|EAR54843.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
          Length = 551

 Score = 37.0 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   N   L    ++C+ CG+CE  CP   I
Sbjct: 416 TTDCTLC--MSCVAVCPTRALHAIGNRPGLLFIEEDCVQCGMCEKACPEKVI 465


>gi|238790208|ref|ZP_04633984.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
 gi|238721746|gb|EEQ13410.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
          Length = 207

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           +++ +TE CI C    C   CP +C   GE  +   I   +C+ CG CE  C  +AI
Sbjct: 537 ISFFITEKCIGCGA--CARQCPANCI-TGEKKMRHTIEQSKCLKCGACETTCKFNAI 590


>gi|317489694|ref|ZP_07948198.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316911288|gb|EFV32893.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 216

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 59  FSYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118

Query: 59  TEPG 62
              G
Sbjct: 119 RVKG 122


>gi|325968086|ref|YP_004244278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707289|gb|ADY00776.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
          Length = 444

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           DCV  CP +      N + I+ + CI+CG+C  +CP  A+
Sbjct: 117 DCVNACPTNATSIVNNRVVINENACIECGLCVSKCPTGAL 156


>gi|218283672|ref|ZP_03489633.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
 gi|218215661|gb|EEC89199.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
          Length = 505

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C EVCP D  +       I  ++CI CG C   CP  AI     P
Sbjct: 117 VTNACQGCLSHQCTEVCPKDAIHIVNGKSCIDQEKCIKCGRCMDACPYHAITKLERP 173


>gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
          Length = 646

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC   E +    I  ++C  CG C   CPVDAI
Sbjct: 220 ITKKCIGC--GSCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269


>gi|297617763|ref|YP_003702922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145600|gb|ADI02357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 354

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CPV      E+   ++ D CI CG+C  +CP +AI
Sbjct: 286 ERCPVKAIEMIEDIAVLNNDRCIGCGLCVSKCPTNAI 322


>gi|226327874|ref|ZP_03803392.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198]
 gi|225203578|gb|EEG85932.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198]
          Length = 180

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C      E E+      F  I+   CI CG+CE  CP  A++
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|148653489|ref|YP_001280582.1| NADH dehydrogenase subunit I [Psychrobacter sp. PRwf-1]
 gi|148572573|gb|ABQ94632.1| NADH-quinone oxidoreductase, chain I [Psychrobacter sp. PRwf-1]
          Length = 182

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVACISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 117

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 118 LTPDFELG---------EYVRQ--NLVYEKEHL 139


>gi|238785613|ref|ZP_04629592.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
 gi|238713500|gb|EEQ05533.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|317406714|gb|EFV86874.1| tetrathionate reductase subunit B [Achromobacter xylosoxidans C54]
          Length = 255

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA--IKPDTE 60
           LC H D   CV VCPV   ++ E+ + +  +E C+ CG C   CP DA  I  DT+
Sbjct: 110 LCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHDTQ 165


>gi|205351901|ref|YP_002225702.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207856078|ref|YP_002242729.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|205271682|emb|CAR36512.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707881|emb|CAR32169.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626939|gb|EGE33282.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 185

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|182414463|ref|YP_001819529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177841677|gb|ACB75929.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 538

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 7   ENCIL-CKHTDCV---EVCP---VDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           E CI+  K TDC    E CP   VD    G+N     +H + CI CG CE  CP D
Sbjct: 449 EKCIVKTKGTDCAACSEHCPTKAVDTKPYGDNLRLPWVHGESCIGCGACEFACPAD 504


>gi|156934092|ref|YP_001438008.1| hypothetical protein ESA_01918 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532346|gb|ABU77172.1| hypothetical protein ESA_01918 [Cronobacter sakazakii ATCC BAA-894]
          Length = 209

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C    C   CP    +  +G+  + ++ D+C+ CG C   CP  A + +
Sbjct: 70  FAYTLSISCNHCADPICTRNCPTTAMHKRDGDGIVRVNTDKCVGCGYCAWSCPYGAPQRN 129

Query: 59  TEPG 62
           T+ G
Sbjct: 130 TQTG 133


>gi|219667677|ref|YP_002458112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537937|gb|ACL19676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 206

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI-----KPDTEPG 62
           C  C++  CV+VCPV   Y+ E+  + I+ D CI C  C   CP +A      +P  +PG
Sbjct: 66  CQHCENAACVKVCPVGATYKDESGRVVINYDRCIGCRFCMAACPYNARVFNWEEPVRDPG 125

Query: 63  L 63
            
Sbjct: 126 F 126


>gi|297617551|ref|YP_003702710.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145388|gb|ADI02145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 582

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M YV  E C  C+   C+++ C    + E E    I+P+ C+ CG+C   C +DAI
Sbjct: 523 MYYVDEEACKGCRL--CIKIGCTGIYWIEEERIARINPNLCVGCGLCAQICKLDAI 576


>gi|218130737|ref|ZP_03459541.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM
          20697]
 gi|217987081|gb|EEC53412.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM
          20697]
          Length = 427

 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 11 LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          +C+H D +++   +C      F+ I  D+CI+CG+C+  CP+
Sbjct: 23 ICRH-DAIKIVERNCL----PFVQIDADKCINCGLCQKACPI 59


>gi|169633882|ref|YP_001707618.1| hypothetical protein ABSDF2362 [Acinetobacter baumannii SDF]
 gi|169152674|emb|CAP01675.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 263

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|126733437|ref|ZP_01749184.1| 4Fe-4S binding domain protein [Roseobacter sp. CCS2]
 gi|126716303|gb|EBA13167.1| 4Fe-4S binding domain protein [Roseobacter sp. CCS2]
          Length = 253

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D + G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRAEDGIVLVNESDCIGCGLCAWACPYGARELDAKEGV 138


>gi|16763989|ref|NP_459604.1| hydrogenase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56414251|ref|YP_151326.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62179213|ref|YP_215630.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615182|ref|YP_001589147.1| hypothetical protein SPAB_02950 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550859|ref|ZP_02344615.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168231615|ref|ZP_02656673.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168240451|ref|ZP_02665383.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168260879|ref|ZP_02682852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465779|ref|ZP_02699661.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818769|ref|ZP_02830769.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194444851|ref|YP_002039852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449002|ref|YP_002044643.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194470652|ref|ZP_03076636.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249684|ref|YP_002145585.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197262291|ref|ZP_03162365.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363174|ref|YP_002142811.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|198245238|ref|YP_002214603.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390569|ref|ZP_03217180.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|238911563|ref|ZP_04655400.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|16419123|gb|AAL19563.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56128508|gb|AAV78014.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62126846|gb|AAX64549.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364546|gb|ABX68314.1| hypothetical protein SPAB_02950 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403514|gb|ACF63736.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194407306|gb|ACF67525.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194457016|gb|EDX45855.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195632027|gb|EDX50547.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197094651|emb|CAR60175.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213387|gb|ACH50784.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197240546|gb|EDY23166.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197939754|gb|ACH77087.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603014|gb|EDZ01560.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205324243|gb|EDZ12082.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334041|gb|EDZ20805.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205340164|gb|EDZ26928.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344169|gb|EDZ30933.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349919|gb|EDZ36550.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261245885|emb|CBG23686.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|301157213|emb|CBW16700.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911643|dbj|BAJ35617.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320084879|emb|CBY94669.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226189|gb|EFX51240.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713677|gb|EFZ05248.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128928|gb|ADX16358.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326622355|gb|EGE28700.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 185

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|332161836|ref|YP_004298413.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605661|emb|CBY27159.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666066|gb|ADZ42710.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|315180126|gb|ADT87040.1| iron-sulfur cluster-binding protein [Vibrio furnissii NCTC 11218]
          Length = 553

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    + EGE   L     +C+ CG+C   CP +A+
Sbjct: 417 TTDCTLC--MSCVAVCPTRALHHEGELPSLKFVEQDCVQCGLCVKACPENAL 466


>gi|317487970|ref|ZP_07946553.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833273|ref|ZP_08165779.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|316912919|gb|EFV34445.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485655|gb|EGC88123.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 206

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCPV   Y+ +   + IH D+CI C +C   CP +A
Sbjct: 65  CQHCENPACLKVCPVGATYKDDMGRVEIHYDKCIGCRICMAACPYNA 111


>gi|291557048|emb|CBL34165.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 560

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSEYA 74
           C+  CPV      +    I  DECI CG+C   CP +A  I+ D     EL       Y 
Sbjct: 17  CIRHCPVKSIRFSDGQANIVEDECILCGMCFVACPQNAKQIRNDVGKAKELIASGTPVYV 76

Query: 75  TQWPNITTKKESLPSAAKMDGVKQ 98
           +  P+     + +   A  D +K+
Sbjct: 77  SIAPSFVANYDGIGITALNDALKK 100


>gi|271502701|ref|YP_003335727.1| glutamate synthase small subunit [Dickeya dadantii Ech586]
 gi|270346256|gb|ACZ79021.1| glutamate synthase, small subunit [Dickeya dadantii Ech586]
          Length = 667

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+ + C +VCP       ++ + +  ++CI C  C   CP  AI  + +
Sbjct: 56  CRHCEDSPCAKVCPTQALVRKQDGIQLIAEKCIGCKTCVLACPFGAISVENQ 107


>gi|51893221|ref|YP_075912.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856910|dbj|BAD41068.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
          Length = 256

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           V   C+ C    C  VCPV   Y+GE+  + I  D CI C  C   CP  A
Sbjct: 101 VPRPCMQCDSPPCAGVCPVGATYKGESGIVVIDDDRCIGCRYCIAACPYGA 151


>gi|260550717|ref|ZP_05824925.1| electron transport complex [Acinetobacter sp. RUH2624]
 gi|260406223|gb|EEW99707.1| electron transport complex [Acinetobacter sp. RUH2624]
          Length = 263

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  MKAIIREDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|288931637|ref|YP_003435697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893885|gb|ADC65422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 235

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            Y V + C+ C+   CV+VCPV+  +   + F+ I  D CI C  C   CP  A
Sbjct: 103 AYFVPKLCMHCEKPPCVKVCPVNATWLTDDGFVLIDEDHCIGCKYCIQACPYGA 156


>gi|315231407|ref|YP_004071843.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
 gi|315184435|gb|ADT84620.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
          Length = 616

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V+ + C+ CK    +  CP   +    N + I P  C  CG+C   CP +AIK  +E G
Sbjct: 555 VIEDKCVGCKACILLTGCPALVYDPETNKVRIDPLICTGCGICNQLCPFEAIKFPSEIG 613


>gi|123442265|ref|YP_001006246.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089226|emb|CAL12072.1| putative iron-sulfur protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|118471643|ref|YP_889770.1| 4Fe-4S ferredoxin iron-sulfur binding [Mycobacterium smegmatis
          str. MC2 155]
 gi|118172930|gb|ABK73826.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mycobacterium smegmatis
          str. MC2 155]
          Length = 133

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDA--I 55
          M  +V+ + CI C    CV+VCP D F  G++ + +     +C  C +CE  CP DA  +
Sbjct: 1  MIEIVSRSACIACDV--CVKVCPTDVFDRGDDGIPVIARQSDCQTCFMCEAYCPTDALYV 58

Query: 56 KPDTEP 61
           P +EP
Sbjct: 59 APVSEP 64


>gi|332298933|ref|YP_004440855.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
 gi|332182036|gb|AEE17724.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
          Length = 491

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT  C  C    C+  C        E    I P++C++CG+C   CP  AI
Sbjct: 112 YMVTNACQACLARPCMMNCAKKAIAITEGRARIDPEKCVNCGLCMQNCPYHAI 164


>gi|322613255|gb|EFY10198.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621325|gb|EFY18182.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623744|gb|EFY20582.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322629016|gb|EFY25795.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631738|gb|EFY28492.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637526|gb|EFY34228.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641866|gb|EFY38496.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322646711|gb|EFY43217.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322651411|gb|EFY47791.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653138|gb|EFY49472.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322658858|gb|EFY55113.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322664872|gb|EFY61065.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322668874|gb|EFY65026.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322670620|gb|EFY66753.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322675361|gb|EFY71437.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322682168|gb|EFY78193.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322685001|gb|EFY80998.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193939|gb|EFZ79141.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197969|gb|EFZ83091.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201984|gb|EFZ87044.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323207117|gb|EFZ92070.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211672|gb|EFZ96506.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323214356|gb|EFZ99107.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221507|gb|EGA05921.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225551|gb|EGA09781.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323231109|gb|EGA15225.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234059|gb|EGA18148.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238246|gb|EGA22304.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242520|gb|EGA26544.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248503|gb|EGA32437.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251281|gb|EGA35153.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323259209|gb|EGA42852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261520|gb|EGA45099.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264799|gb|EGA48300.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272364|gb|EGA55771.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 185

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|289523847|ref|ZP_06440701.1| conserved domain protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289502503|gb|EFD23667.1| conserved domain protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 57

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + CI C+   CV VCP +     +    + PD CI+CG C   CPV AI 
Sbjct: 9  DTCIGCEA--CVGVCPAEAISIEDGKAKVDPDTCIECGACVSTCPVSAIS 56


>gi|307267356|ref|ZP_07548851.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917614|gb|EFN47893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 154

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +CV VCP D     +    I P++C DCG C   CPV AI
Sbjct: 109 CIGC--GNCVRVCPFDAIELKDGIAYIDPNKCRDCGRCIDICPVGAI 153


>gi|288931276|ref|YP_003435336.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Ferroglobus placidus DSM 10642]
 gi|288893524|gb|ADC65061.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Ferroglobus placidus DSM 10642]
          Length = 97

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V  E CI C    CV+ CP  C      +G     +  D C  CG+C   CPV+AI+ 
Sbjct: 29 AFVDEEKCIGCGR--CVKFCPEPCIELVEKDGNKVAKVDHDYCKGCGICASVCPVNAIRM 86

Query: 58 DTE 60
          +T+
Sbjct: 87 ETK 89


>gi|297568110|ref|YP_003689454.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924025|gb|ADH84835.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 12/53 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECP 51
           +C LC+  DC  +C   C Y         EGE    + PD CI CG C   CP
Sbjct: 621 SCGLCR--DC-HICENTCHYGAISRRDLGEGEFEYVVDPDRCIGCGFCAGTCP 670


>gi|257790196|ref|YP_003180802.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474093|gb|ACV54413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 209

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             + V+  C  C    C+EVCP     + E   +++    CI CG C   CP  A K D 
Sbjct: 59  FAFYVSSACNHCASPACMEVCPTGAMGKNELGLVSVDEHRCIGCGYCALSCPYHAPKVDR 118

Query: 60  EPG 62
             G
Sbjct: 119 TVG 121


>gi|168236599|ref|ZP_02661657.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736674|ref|YP_002113729.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712176|gb|ACF91397.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290426|gb|EDY29782.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 185

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|150402886|ref|YP_001330180.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033916|gb|ABR66029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 68

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 11/69 (15%)

Query: 1  MTYVVTENCILCKHTD-CVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECP 51
          M  ++ EN   CK  D C+EVCP D + + E          + ++P EC +C +C  +CP
Sbjct: 1  MKIIIDEN--YCKGCDICIEVCPKDVYKKSETLNKKGIYPPIPVNPKECTNCQLCILQCP 58

Query: 52 VDAIKPDTE 60
            AI  +TE
Sbjct: 59 DQAITVETE 67


>gi|1353257|gb|AAB06234.1| dimethyl sulphoxide reductase subunit B [Haemophilus influenzae]
          Length = 205

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D + 
Sbjct: 61  YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQK 120

Query: 62  G 62
           G
Sbjct: 121 G 121


>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 646

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC   E +    I  ++C  CG C   CPVDAI
Sbjct: 220 ITKKCIGC--GSCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269


>gi|283832974|ref|ZP_06352715.1| putative polyferredoxin [Citrobacter youngae ATCC 29220]
 gi|291071581|gb|EFE09690.1| putative polyferredoxin [Citrobacter youngae ATCC 29220]
          Length = 290

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CV +CPV+          I+ DECI CG C   CPVDA++
Sbjct: 31 CVSICPVNAISLSPAGPEINDDECIRCGNCLFACPVDALQ 70


>gi|271498826|ref|YP_003331851.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270342381|gb|ACZ75146.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 184

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
           C  C+H  C++ CPV+ + + E+ + +H P  CI C  C   CP  A K
Sbjct: 57  CNHCEHPACLDACPVEAYTKREDGIVVHDPARCIGCKNCLRSCPYGAPK 105


>gi|254513803|ref|ZP_05125864.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
 gi|219676046|gb|EED32411.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
          Length = 202

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +++ E+CI C  T C++ CPVD      +    +   EC  C +C   CPVD I+
Sbjct: 113 VAFIIEEDCIGC--TKCIQACPVDAIVGAAKQMHTVIAAECTGCDLCVDPCPVDCIE 167


>gi|238792134|ref|ZP_04635769.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
 gi|238728371|gb|EEQ19890.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|304391506|ref|ZP_07373448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303295735|gb|EFL90093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 273

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + +  D+CI CG+C   C   A + D   G+
Sbjct: 97  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVDEDKCIGCGLCAWSCAYGAREMDAAAGV 155


>gi|260913866|ref|ZP_05920340.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
 gi|260631953|gb|EEX50130.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
          Length = 197

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  E CI C  T C++ CPVD        +  I PD C  C +C P CP D I 
Sbjct: 106 VAFIDEEMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCIS 160


>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC   E +    I  + C  CG C   CPVDAI
Sbjct: 218 ITKKCIGCGA--CKRACPVDCINGELKKKHEIDYNRCTHCGACVSACPVDAI 267


>gi|224369388|ref|YP_002603552.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692105|gb|ACN15388.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 519

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 17  CVEVCPVDCFYE-GENFL---AIHPDECIDCGVCEPECPV 52
           C EVCP    Y   EN +    + PD CI CG C+  CPV
Sbjct: 439 CAEVCPTHAVYTIKENNVHHPRLAPDACIGCGACQQVCPV 478


>gi|218780883|ref|YP_002432201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762267|gb|ACL04733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 354

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E+C  C+   C+E C +      ++   I+ D CI CG+C   CP +AI        
Sbjct: 274 VSDEDCTGCE--TCLERCQMGAIDMKDDVAQINLDRCIGCGLCVTTCPTEAIT------- 324

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAK 92
              L   SE A + P  +  ++ +  A K
Sbjct: 325 ---LAAKSENAMRLPPASMMEQMMGMAQK 350


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +TE CI C  T C   CPV C   + +    I  + CI CG C   CPV A+
Sbjct: 575 LEFYITEKCIGC--TKCARNCPVSCISGKVKERHVIDTEACIKCGNCMAVCPVGAV 628


>gi|20092114|ref|NP_618189.1| hypothetical protein MA3299 [Methanosarcina acetivorans C2A]
 gi|19917334|gb|AAM06669.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 438

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK     E CP+    +GEN    +P+ C +CG+C   C  +A 
Sbjct: 331 EKCIDCKICCVAEACPMGAVSKGENGAVHNPELCFNCGLCISRCKGEAF 379


>gi|16759572|ref|NP_455189.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142655|ref|NP_805997.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213023991|ref|ZP_03338438.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213051862|ref|ZP_03344740.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213419294|ref|ZP_03352360.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|213425125|ref|ZP_03357875.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581054|ref|ZP_03362880.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213622427|ref|ZP_03375210.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647695|ref|ZP_03377748.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|289812473|ref|ZP_06543102.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
 gi|25285330|pir||AG0577 molybdopterin-containing oxidoreductase iron-sulfur chain STY0660
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501864|emb|CAD05089.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138286|gb|AAO69857.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 185

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|238796520|ref|ZP_04640028.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
 gi|238719725|gb|EEQ11533.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|330508939|ref|YP_004385367.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
 gi|328929747|gb|AEB69549.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
          Length = 811

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV  + CI CK   CV+VCP       ++   +    C  CG C   CPVDAIK
Sbjct: 573 YVDPDLCIKCKL--CVDVCPQKAI-SVKSPAYVDEAACKGCGSCAAACPVDAIK 623


>gi|325830302|ref|ZP_08163759.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|325487769|gb|EGC90207.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 216

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 59  FSYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118

Query: 59  TEPG 62
              G
Sbjct: 119 RVKG 122


>gi|313905672|ref|ZP_07839033.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
 gi|313469496|gb|EFR64837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
          Length = 206

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+NC  C    C+ VCP  C         I  + C+ CG C   CP  A+
Sbjct: 153 YFVTDNCTGCG--SCLSVCPQSCIITTRIPYVIEQEHCLHCGNCLNTCPAGAV 203


>gi|242238729|ref|YP_002986910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242130786|gb|ACS85088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 208

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +LC+H +   C +VCPV+     ++ + +  + C+ C +C   CP  AI P 
Sbjct: 49  VLCRHCEDAPCAKVCPVNAIRHEDHAVMLDENACVGCKLCAIACPFGAITPS 100


>gi|224582445|ref|YP_002636243.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466972|gb|ACN44802.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 179

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 51  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 103


>gi|193215552|ref|YP_001996751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089029|gb|ACF14304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 199

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C++T C+  CP    Y+ E+  + I+ D CI C  C   CP DA  P
Sbjct: 60  CMHCENTPCLSACPTGATYKTEDGIVRINYDRCIGCYACMIACPYDARYP 109


>gi|15668438|ref|NP_247236.1| carbon monoxide dehydrogenase iron sulfur subunit CooF1
          [Methanocaldococcus jannaschii DSM 2661]
 gi|2494449|sp|Q57712|Y264_METJA RecName: Full=Uncharacterized protein MJ0264
 gi|1592278|gb|AAB98251.1| carbon monoxide dehydrogenase, iron sulfur subunit CooF-1 (cooF1)
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 153

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C+  CP +      N + +  D+C+ CG+C   CP  AI+ D
Sbjct: 49 CMHCDRNPCLYACPENAIERINNKVVVIKDKCVGCGLCALACPFGAIRID 98


>gi|309781571|ref|ZP_07676306.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA]
 gi|308919676|gb|EFP65338.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA]
          Length = 708

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV  CP     +      LA+    C+ CG+CE  CP  AI
Sbjct: 578 ERCTLC--MACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAI 626



 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 17  CVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CV+VC        + +G   + + P+ C+ CG C   CP  AI
Sbjct: 328 CVDVCSASAIASQWKDGRGSVHVTPNLCVGCGACTTACPTGAI 370


>gi|260432364|ref|ZP_05786335.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416192|gb|EEX09451.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 249

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDAAAGV 138


>gi|257790233|ref|YP_003180839.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474130|gb|ACV54450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 216

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 59  FSYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118

Query: 59  TEPG 62
              G
Sbjct: 119 RVKG 122


>gi|161504217|ref|YP_001571329.1| hypothetical protein SARI_02324 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865564|gb|ABX22187.1| hypothetical protein SARI_02324 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 185

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|126732920|ref|ZP_01748710.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126706626|gb|EBA05701.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 649

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 10  ILCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +LC H        T C+++CP          +++ P  C  CG C   CP  AI  D  P
Sbjct: 267 LLCAHSRAEQTGCTRCLDLCPTGAITPDGEHVSVDPLICAGCGACSAVCPSGAISYDAPP 326



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI    +P L+L
Sbjct: 503 CTLC--LSCVSLCPSGALGDNPDRPELRFQEDACLQCGLCANVCPEEAIS--LQPQLDL 557


>gi|150377591|ref|YP_001314186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150032138|gb|ABR64253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 679

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEP 61
           V  + C LC    CV  CP     + E   A++  E  C+ CG+C   CP  AI    + 
Sbjct: 519 VNVDACTLC--LSCVSACPTGALSDSEERPALYFAESACVQCGLCAATCPEKAIALVPQL 576

Query: 62  GLELW 66
             + W
Sbjct: 577 DFQAW 581


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV+E C  C    C + CPVDC    +G+    I  ++CI CG C   CP  AI
Sbjct: 544 VVSELCKKCGI--CAKKCPVDCISGVKGKEVYLIDQEKCIKCGACLEACPFKAI 595


>gi|260769053|ref|ZP_05877987.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|260617083|gb|EEX42268.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|315180794|gb|ADT87708.1| electron transport complex protein RnfB [Vibrio furnissii NCTC
           11218]
          Length = 199

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|94968068|ref|YP_590116.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
          versatilis Ellin345]
 gi|94550118|gb|ABF40042.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
          Koribacter versatilis Ellin345]
          Length = 84

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 10/63 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M +V+ + C   K   C++ CP +  +        E  + L I+P+EC+DCG C   CP 
Sbjct: 1  MAHVIVDTCE--KDMLCIDSCPSNAIHPLKEETEWEAASQLYINPEECMDCGACISTCPT 58

Query: 53 DAI 55
          ++I
Sbjct: 59 NSI 61


>gi|308051297|ref|YP_003914863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633487|gb|ADN77789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 562

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           V  + C LC    C  +CP     +G +  A+   E  C+ CG+CE  CP  AI
Sbjct: 425 VDVDKCTLC--MSCAALCPSRALMDGGDSPALKFTEQACVQCGLCERACPEKAI 476



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T C+ VCP D     ++ + + P  C   G C   CP  A+  D
Sbjct: 199 TRCLNVCPADAIESVDHKITVDPHLCHGAGSCTAACPTGALSYD 242


>gi|291280349|ref|YP_003497184.1| NADH-quinone oxidoreductase subunit I [Deferribacter desulfuricans
           SSM1]
 gi|290755051|dbj|BAI81428.1| NADH-quinone oxidoreductase, I subunit [Deferribacter desulfuricans
           SSM1]
          Length = 153

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 17  CVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           C  VCP +C +        GE  +    I  D CI CG CE  CPVDAI
Sbjct: 69  CERVCPSECIHIETDAGPNGERLIRKYEIELDRCIYCGFCEEACPVDAI 117


>gi|227832792|ref|YP_002834499.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182719|ref|ZP_06042140.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453808|gb|ACP32561.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 347

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   + G+ L
Sbjct: 120 CKHCTNAGCLDVCPTGALFRSEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGGVTL 177


>gi|89896541|ref|YP_520028.1| hypothetical protein DSY3795 [Desulfitobacterium hafniense Y51]
 gi|89335989|dbj|BAE85584.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 93

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++  E C  CK  +C+ VCP   + E    + +    C++CG C   CP  AI+
Sbjct: 24 IHLHNELCKSCKEKNCLLVCPAGLYSEQNGEIIVEWAGCLECGTCRAVCPQKAIE 78


>gi|320183165|gb|EFW58023.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           CDC 796-83]
 gi|332097171|gb|EGJ02154.1| anaerobic dimethyl sulfoxide reductase chain B domain protein
           [Shigella boydii 3594-74]
          Length = 122

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A+    
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGALNRPG 118

Query: 60  EPG 62
            PG
Sbjct: 119 NPG 121


>gi|225175530|ref|ZP_03729524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168859|gb|EEG77659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 107

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          V + C   K   C+ VCP D   +   G+  +A+ P++C DC  C  ECP DAI
Sbjct: 9  VCDGCPHAKEAPCMRVCPGDLLTKDSSGKAAIAM-PEDCWDCAACVKECPRDAI 61


>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 646

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C   CPVDC   E +    I  ++C  CG C   CPVDAI
Sbjct: 220 ITKKCIGC--GSCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269


>gi|182417446|ref|ZP_02948773.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium butyricum 5521]
 gi|237665843|ref|ZP_04525831.1| 4Fe-4S binding domain protein [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182378615|gb|EDT76142.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium butyricum 5521]
 gi|237658790|gb|EEP56342.1| nitroreductase family protein [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 278

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  V  + CI C    CV+ CPV      +N   I+ + C+ CG C   CPV+A+  D
Sbjct: 1  MFKVNKDKCIGCSQ--CVKDCPVRVISLIDNKAEINNNNCMKCGHCIAICPVNAVSTD 56


>gi|220909526|ref|YP_002484837.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 7425]
 gi|219866137|gb|ACL46476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7425]
          Length = 75

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DCV+ CPV C +       +G ++  I    CIDCG+C   CPV+ AI P+    L+
Sbjct: 14 ADCVDACPVACIHPGPAKNLKGTDWYWIDFATCIDCGICLQVCPVEGAIIPEERSDLQ 71


>gi|197117572|ref|YP_002137999.1| ferredoxin family protein [Geobacter bemidjiensis Bem]
 gi|197086932|gb|ACH38203.1| ferredoxin family protein [Geobacter bemidjiensis Bem]
          Length = 97

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--- 62
          E C+ C    C+EVCP   F  E +  L    D C++CG C   CP  AI  D   G   
Sbjct: 18 ELCVGCGR--CIEVCPHQVFQLEEKRALLADRDACMECGACALNCPAAAINVDAGVGCAS 75

Query: 63 --LELWLK 68
            +  WL+
Sbjct: 76 GLINEWLR 83


>gi|159903401|ref|YP_001550745.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
 gi|159888577|gb|ABX08791.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
          Length = 73

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 15 TDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLEL 65
            C + CPV+C         +G N+  I  + CIDCGVC   CPV  A+  +  P L++
Sbjct: 14 ASCFQACPVECIKPGQGGNMKGTNYYYIDFNTCIDCGVCLEVCPVKGAVIAEERPDLQI 72


>gi|332295968|ref|YP_004437891.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179071|gb|AEE14760.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 259

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           C  C    CV+ CP    ++ EN  +A   ++CI CG C   CP
Sbjct: 73  CFHCGEPACVKACPSGALFQAENGIVAFDVNKCIACGYCHSACP 116


>gi|304405134|ref|ZP_07386794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus curdlanolyticus YK9]
 gi|304346013|gb|EFM11847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus curdlanolyticus YK9]
          Length = 110

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
          V    C+ C    CV VCP + F   E  + +    D+C  C +CE  CPVDA+  + +P
Sbjct: 5  VSASRCVSCNQ--CVSVCPTNVFDMAEGGIPVIARQDDCQTCFMCELYCPVDALYVEPDP 62


>gi|293391269|ref|ZP_06635603.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951803|gb|EFE01922.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 205

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP     +  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICIGCRYCHMACPYDAPQFDA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|157375180|ref|YP_001473780.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
 gi|189043390|sp|A8FUX9|RNFB_SHESH RecName: Full=Electron transport complex protein rnfB
 gi|157317554|gb|ABV36652.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  E CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAYIREEECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|89894195|ref|YP_517682.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219668592|ref|YP_002459027.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89333643|dbj|BAE83238.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219538852|gb|ACL20591.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 190

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVD 53
             Y ++  C  C+H  C E CP    Y+ E    + +  D+CI CG C   CP +
Sbjct: 59  FAYWLSLGCNHCEHPKCAENCPTGAMYKREEDGIVLVDQDKCIGCGYCTWSCPYE 113


>gi|15922548|ref|NP_378217.1| NADH dehydrogenase subunit I [Sulfolobus tokodaii str. 7]
 gi|15623338|dbj|BAB67326.1| 169aa long hypothetical NADH-plastoquinone oxidoreductase subunit 9
           [Sulfolobus tokodaii str. 7]
          Length = 169

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  +CP D        G+ F +I+   C+ CG C   CPVDA+K
Sbjct: 57  MIRLYKDICIGC--TLCALICPADAMKMVTEGGKKFPSINYGRCVFCGFCVDVCPVDALK 114


>gi|315922949|ref|ZP_07919189.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. D2]
 gi|313696824|gb|EFS33659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. D2]
          Length = 403

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 17 CVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPV 52
          C++VC  +       Y+G  ++ I   +C+ CG+CE  CP+
Sbjct: 19 CIDVCNKNAINIVEHYDGHRYVEIDKSKCVGCGMCEQICPI 59


>gi|307546575|ref|YP_003899054.1| ferredoxin [Halomonas elongata DSM 2581]
 gi|307218599|emb|CBV43869.1| ferredoxin [Halomonas elongata DSM 2581]
          Length = 82

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/23 (73%), Positives = 18/23 (78%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP DAI P  E
Sbjct: 7  DECINCDVCEPECPNDAISPGEE 29


>gi|218782988|ref|YP_002434306.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764372|gb|ACL06838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 378

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           M  V TE C+ C    C E C      +GE+   +++ D CI CGVC   CP +AI
Sbjct: 308 MAVVDTEKCVSCG--TCAEKCGTQAMTQGEDGSPSLNKDLCIGCGVCAHFCPENAI 361


>gi|159905364|ref|YP_001549026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886857|gb|ABX01794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 395

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 13/77 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI---------K 56
           E CI C+   CVE CP     Y GE      P  C  CG+C   CPV+AI         K
Sbjct: 197 EECIGCEK--CVEACPGSMIEYNGEALGVKLPVACPACGLCVESCPVEAIGLEVEYASAK 254

Query: 57  PDTEPGLELWLKINSEY 73
           P T+ GL +WL+    Y
Sbjct: 255 PVTDEGL-VWLEEKCAY 270



 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 8   NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDE-------CIDCGVCEPECPVDAI 55
           +C+LC+   CV++CPV+        E      + P E       C+ CGVC PECPVDAI
Sbjct: 90  HCVLCEK--CVDICPVEIISLPGKAEKPKKEVVIPQEPIAVTKDCVACGVCVPECPVDAI 147

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +    ++    I     +Q    T    ++  A K+   +QK  K F+ N
Sbjct: 148 SIEDIAVIDTDKCIYCTVCSQ----TCPWNAIFVAGKLPQKRQKTIKSFTVN 195


>gi|157164593|ref|YP_001467233.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           concisus 13826]
 gi|112801850|gb|EAT99194.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter concisus 13826]
          Length = 187

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           T  + ++C++C+   CVEVCP    F   +    +    C+ C  C   CP DA  + PD
Sbjct: 51  TDFLRQSCVMCEDAPCVEVCPTGASFKTADGVTLLDHRICVSCKYCILACPYDARYVLPD 110

Query: 59  TEPG 62
            E G
Sbjct: 111 GEIG 114


>gi|39934299|ref|NP_946575.1| putative indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Rhodopseudomonas palustris CGA009]
 gi|39648147|emb|CAE26667.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 608

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++T  C  C+   C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 545 IITSQCTACQ--SCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 602

Query: 59  T 59
           T
Sbjct: 603 T 603


>gi|300723697|ref|YP_003713004.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630221|emb|CBJ90872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Xenorhabdus nematophila ATCC 19061]
          Length = 180

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C    + E+        F  ++   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHKDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|89901118|ref|YP_523589.1| RnfABCDGE type electron transport complex subunit B [Rhodoferax
           ferrireducens T118]
 gi|89345855|gb|ABD70058.1| electron transport complex, RnfABCDGE type, B subunit [Rhodoferax
           ferrireducens T118]
          Length = 232

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD- 58
           + ++  + CI C  T C+E CP D        +  +    C  C +C P CPVD IK + 
Sbjct: 76  VAFIDEDWCIGC--TLCIEACPTDAILGSNKLMHTVIEAYCTGCELCLPVCPVDCIKLEN 133

Query: 59  ---TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                 G   W +  ++ A     + + + S     +++  ++K     +P 
Sbjct: 134 VTKAATGWAAWSRQQADLAQIRYKLNSNRRSKDGGFRLEKPEEKSRMTAAPT 185


>gi|21227667|ref|NP_633589.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina
           mazei Go1]
 gi|20906059|gb|AAM31261.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina
           mazei Go1]
          Length = 346

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query: 14  HTDCVEVCPVDCFY-----EGENFLAI--HPDECIDCGVCEPECPVDAI 55
           HT C++VCP +  +      GE    I   PD CI CG C   CPVDAI
Sbjct: 185 HT-CIDVCPANAIFNKKAKSGERVEKITHRPDACIYCGACAVACPVDAI 232


>gi|330445943|ref|ZP_08309595.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490134|dbj|GAA04092.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 551

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T++C LC    CV VCP    +   +    L I  D C+ CG+CE  CP   I
Sbjct: 416 TKDCTLC--MSCVAVCPTRALHAIGDRPGLLFIEED-CVQCGMCEKACPEKVI 465


>gi|269215524|ref|ZP_06159378.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit [Slackia
           exigua ATCC 700122]
 gi|269131011|gb|EEZ62086.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit [Slackia
           exigua ATCC 700122]
          Length = 580

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V  +C  CK   CV++ CP   F    N  +I P  C+ C  C   CP   I  ++E
Sbjct: 522 YAVKPDCRGCKM--CVQIGCPSISFDLSSNVASIDPALCVGCSQCAQVCPFSVIVKESE 578


>gi|256840652|ref|ZP_05546160.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737924|gb|EEU51250.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 301

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++
Sbjct: 23 ESCIKC--GKCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSV 72


>gi|258513534|ref|YP_003189756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257777239|gb|ACV61133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 443

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
          T+CV+ CP +     E    I  + CIDCG C   CP  A K  T  GLE     +   A
Sbjct: 19 TNCVKRCPTEAIRVREGRALIIEERCIDCGECIKICPNRA-KLATTDGLEQLQNFHYTIA 77

Query: 75 TQWPNITTKKESLPSAAKMDG 95
             P++  + E   S  ++ G
Sbjct: 78 LPAPSLYAQFEPNTSPEQILG 98


>gi|198276949|ref|ZP_03209480.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM
          17135]
 gi|198270474|gb|EDY94744.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM
          17135]
          Length = 293

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++    CI CK   CV +CP   F  + +  + ++ D+CI CG C   CP ++I+
Sbjct: 13 HINQNTCIRCK--KCVRICPSALFTLQEDKGIEVNTDDCISCGHCVAVCPTNSIE 65


>gi|254445223|ref|ZP_05058699.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259531|gb|EDY83839.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 527

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C    C+  CPVD +  +  + + +H  D+CI C  C  +CP D  K   + G
Sbjct: 110 VTSACHHCVEPACMIGCPVDAYEKDAVSGIVLHLDDQCIGCQYCVLKCPYDVPKFSPKRG 169

Query: 63  L 63
           +
Sbjct: 170 I 170


>gi|11497774|ref|NP_068996.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650484|gb|AAB91070.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 180

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           +C H D   CV  CPV+  Y+ E  L +  DE CI CG C   CP  A
Sbjct: 56  ICNHCDNPSCVHACPVNATYKTEEGLVLIDDEICIGCGACIQACPYGA 103


>gi|56477160|ref|YP_158749.1| subunit B of a molybdenum enzyme, that of tetrathionate reductase
           (TTRB) [Aromatoleum aromaticum EbN1]
 gi|56313203|emb|CAI07848.1| subunit B of a molybdenum enzyme, similar to that of tetrathionate
           reductase (TTRB) [Aromatoleum aromaticum EbN1]
          Length = 246

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           TY++   C  C    CV VCPV   ++ E+  + +  D C+ C  C   CP DA
Sbjct: 93  TYMLPRLCNHCDAPPCVPVCPVGATFKREDGIVVVDGDRCVGCAYCVQACPYDA 146


>gi|325474291|gb|EGC77479.1| ferredoxin [Treponema denticola F0402]
          Length = 58

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++  C  C    C   CPV+   E      I  D CI CG C   CPV+AI  +
Sbjct: 3  MAYKISNECTNC--AACESECPVNAISEAGGKHVIDADTCISCGACAGVCPVEAISEE 58


>gi|266619158|ref|ZP_06112093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
 gi|288869304|gb|EFD01603.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
          Length = 425

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C+ C    C +VCPV      EGEN      ++ + C+ CGVC   C V AI+    P
Sbjct: 293 ERCVGCGK--CAKVCPVLAVSMEEGENGKKKAVVNKEICLGCGVCARNCAVKAIELQRRP 350


>gi|261867201|ref|YP_003255123.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412533|gb|ACX81904.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP     +  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICIGCRYCHMACPYDAPQFDA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|253688807|ref|YP_003017997.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755385|gb|ACT13461.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 223

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
            +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  HSCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYQVRFIHPKTK 147


>gi|163783460|ref|ZP_02178451.1| cytochrome b/b6-like protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881224|gb|EDP74737.1| cytochrome b/b6-like protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 651

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+ + C  C+   C E CP +  Y      E E    I  D+C  CG+C   C  +A   
Sbjct: 297 VIEDRCEGCRQ--CFEDCPYEAIYMKRISPEEEKAYVIE-DKCAGCGICVASCNYNANVI 353

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           DT P    +  I  E   Q P +   +   P +A++D  +     Y  P  G  NT
Sbjct: 354 DTVP----YEGILKEVELQRPELLVFR--CPFSAQVDE-RNGLRVYTLPCAGALNT 402


>gi|150402891|ref|YP_001330185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033921|gb|ABR66034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 395

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 13/77 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI---------K 56
           E CI C+   CVE CP     Y GE      P  C  CG+C   CPV+AI         K
Sbjct: 197 EECIGCEK--CVEACPGSMIEYNGEALGVKLPVACPACGLCVESCPVEAISLEVEYASAK 254

Query: 57  PDTEPGLELWLKINSEY 73
           P T+ GL +WL+    Y
Sbjct: 255 PVTDEGL-VWLEDKCAY 270



 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 8   NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDE-------CIDCGVCEPECPVDAI 55
           +C+LC+   CV++CP +        E      I P E       C+ CGVC PECPVDAI
Sbjct: 90  HCVLCEK--CVDICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI 147

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                  ++    I     +Q    T    ++  A KM   +QK  K F+ N
Sbjct: 148 SIKDIAVIDTDKCIYCTVCSQ----TCPWNAIFVAGKMPQKRQKTIKSFTVN 195


>gi|92115240|ref|YP_575168.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043]
 gi|110287760|sp|Q1QST9|NUOI_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91798330|gb|ABE60469.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043]
          Length = 179

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    +GE         F  I+   CI CG+CE  CP  AI+
Sbjct: 57  ERCVACNL--CAVACPVACISLQKGERDDGRWYPEFFRINFSRCIFCGLCEEACPTSAIQ 114

Query: 57  --PDTE 60
             PD E
Sbjct: 115 LTPDFE 120


>gi|71892259|ref|YP_277993.1| NADH dehydrogenase subunit I [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|110287759|sp|Q492I3|NUOI_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71796365|gb|AAZ41116.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 181

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    +GE+        F  I+   CI CG+CE  CP  AI+
Sbjct: 59  ERCVACNL--CAVACPVGCISLKKGESTDGRWYPKFFRINFSRCIFCGMCEEACPTAAIQ 116

Query: 57  --PDTE 60
             PD E
Sbjct: 117 LTPDFE 122


>gi|89893295|ref|YP_516782.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332743|dbj|BAE82338.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 201

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C  VCPV   ++ E   + + PD+CI C  C   CP DA   + E G+
Sbjct: 63  CNQCQDAPCQTVCPVKATHKDEGGVIVVDPDKCIGCRYCIAACPYDARFLNKETGM 118


>gi|295106206|emb|CBL03749.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 117

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPE 49
          C+ C++  CV VCPV   Y+G++  + I  D CI C  C P 
Sbjct: 53 CMQCENPPCVSVCPVQATYKGDDGIVVIDADRCIGCKYCTPR 94


>gi|295094493|emb|CBK83584.1| Coenzyme F420-reducing hydrogenase, beta subunit [Coprococcus sp.
           ART55/1]
          Length = 856

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 6   TENCILCKHTD-------CVEVCPVDCF---YEGENFLA--IHPDECIDCGVCEPECP 51
           ++  + C H D       C  VCPV+     Y+ E FLA  +   +C +CG+C   CP
Sbjct: 113 SDKTVGCIHPDYCCGCGACYSVCPVNAISMKYDSEGFLAPVVDRSKCTNCGLCRKICP 170



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 35  IHPDECIDCGVCEPECPVDAI--KPDTE 60
           IHPD C  CG C   CPV+AI  K D+E
Sbjct: 120 IHPDYCCGCGACYSVCPVNAISMKYDSE 147


>gi|317133605|ref|YP_004092919.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471584|gb|ADU28188.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 482

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C   CP       ++   I P++C +CG C   CP  AI     P
Sbjct: 90  FSVTDACRGCIAHKCHAACPFGAISYEKHRAVIDPEKCRECGRCMKACPYHAIIERQRP 148


>gi|260913909|ref|ZP_05920383.1| tetrathionate reductase subunit B [Pasteurella dagmatis ATCC 43325]
 gi|260631996|gb|EEX50173.1| tetrathionate reductase subunit B [Pasteurella dagmatis ATCC 43325]
          Length = 245

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ ++  + I+ + CI C  C   CP DA
Sbjct: 98  LCNHCDNPPCVPVCPVQATYQRKDGIVVINNERCIGCAYCVQACPYDA 145


>gi|269791990|ref|YP_003316894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099625|gb|ACZ18612.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 57

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+ C+   CV VCP       +    ++PD C++CG C   CPV AI 
Sbjct: 9  DTCVGCEA--CVGVCPTSAISMVDGKAEVNPDACVECGACVATCPVSAIS 56


>gi|258655376|ref|YP_003204532.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258558601|gb|ACV81543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 332

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C H  C++VCP    +  E   + I  D C  CG C   CP   ++
Sbjct: 129 CKHCTHAGCLDVCPTGALFRTEFGTVVIQADVCNGCGTCVAGCPFGVVE 177


>gi|206889463|ref|YP_002248730.1| nitrate-inducible formate dehydrogenase, beta subunit
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741401|gb|ACI20458.1| nitrate-inducible formate dehydrogenase, beta subunit
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 243

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPD 58
           V++ C+ C    CV++CPV    + +    ++ D  +CI C  C+  CP D  + D
Sbjct: 70  VSQRCMHCGEPACVQICPVGALMKDKETGIVYYDKNKCIACHACKSACPFDVPRYD 125


>gi|9909124|dbj|BAB12024.1| pyruvate: NADP+ oxidoreductase [Euglena gracilis]
          Length = 1803

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 27  YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
           Y+G NF + + P++C  C VC   CP DA++           + N E+A + PN
Sbjct: 797 YQGMNFRIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQRTNWEFAIKVPN 850


>gi|189500792|ref|YP_001960262.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189496233|gb|ACE04781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 199

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C++T C+  CP    Y+ E+  + I+ D C+ C  C   CP DA  P
Sbjct: 60  CMHCENTPCLSACPSGATYKTEDGIIRINYDRCMGCYACSIACPYDARYP 109


>gi|288559598|ref|YP_003423084.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF
           [Methanobrevibacter ruminantium M1]
 gi|288542308|gb|ADC46192.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF
           [Methanobrevibacter ruminantium M1]
          Length = 367

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E CI C    C E+CP +        GE  + I  ++C+ C VC+  CPVDAIK 
Sbjct: 175 EECIYCGA--CAELCPAEAIVVDKATGEESIVIDKEKCVYCLVCKKACPVDAIKA 227


>gi|261823787|ref|YP_003261893.1| oxidoreductase Fe-S binding subunit [Pectobacterium wasabiae
           WPP163]
 gi|261607800|gb|ACX90286.1| glutamate synthase, small subunit [Pectobacterium wasabiae WPP163]
          Length = 674

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCAGVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNP 108


>gi|238750629|ref|ZP_04612129.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
 gi|238711277|gb|EEQ03495.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
          Length = 205

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D 
Sbjct: 59  FAYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|121535727|ref|ZP_01667530.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305692|gb|EAX46631.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 147

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDT 59
           L+ HPD+CI CG+C   CPV AI+  +
Sbjct: 110 LSFHPDKCIVCGLCVQACPVRAIRQGS 136


>gi|93005410|ref|YP_579847.1| NADH dehydrogenase subunit I [Psychrobacter cryohalolentis K5]
 gi|110287769|sp|Q1QD90|NUOI_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|92393088|gb|ABE74363.1| NADH-quinone oxidoreductase, chain I [Psychrobacter cryohalolentis
           K5]
          Length = 182

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 118 MTPDFEMG 125


>gi|307265661|ref|ZP_07547214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919305|gb|EFN49526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 123

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CILC    C  VCP +C      E   A  P ECI CGVC   CP  ++
Sbjct: 41 DKCILC--GICQRVCPSNCIQVNRKEGTWAFQPFECIICGVCVESCPTKSL 89


>gi|270263094|ref|ZP_06191364.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Serratia odorifera 4Rx13]
 gi|270042782|gb|EFA15876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Serratia odorifera 4Rx13]
          Length = 205

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   CV+VCPV+     +N + ++   C+ C +C   CP  AI
Sbjct: 51 CRQCEDAPCVQVCPVNAITHQDNAIVLNESLCVSCKLCGIACPFGAI 97


>gi|238760425|ref|ZP_04621564.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
 gi|238701377|gb|EEP93955.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
          Length = 207

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|227503750|ref|ZP_03933799.1| possible formate dehydrogenase beta subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199574|gb|EEI79622.1| possible formate dehydrogenase beta subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 352

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   + G+ 
Sbjct: 122 SDVCKHCTNAGCLDVCPTGALFRSEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGGVT 181

Query: 65  L 65
           L
Sbjct: 182 L 182


>gi|51244627|ref|YP_064511.1| ferredoxin [Desulfotalea psychrophila LSv54]
 gi|50875664|emb|CAG35504.1| related to polyferredoxin [Desulfotalea psychrophila LSv54]
          Length = 291

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C + CP D     ENF  +  ++C+ CGVC   CP + I+  T
Sbjct: 152 ECADACPFDAITMVENFPVVDSNKCVSCGVCVRTCPKNIIELQT 195


>gi|33112418|sp|Q94IN5|PNO_EUGGR RecName: Full=Pyruvate dehydrogenase [NADP+], mitochondrial;
           AltName: Full=Aquacobalamin reductase [NADPH]; AltName:
           Full=EgPNOmt; AltName: Full=Pyruvate:NADP+
           oxidoreductase; Flags: Precursor
 gi|13872738|emb|CAC37628.1| pyruvate:NADP+ oxidoreductase [Euglena gracilis]
          Length = 1803

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 27  YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
           Y+G NF + + P++C  C VC   CP DA++           + N E+A + PN
Sbjct: 797 YQGMNFRIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQRTNWEFAIKVPN 850


>gi|27904613|ref|NP_777739.1| electron transport complex protein RnfC [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|46396891|sp|Q89AW8|RNFC_BUCBP RecName: Full=Electron transport complex protein rnfC
 gi|27904010|gb|AAO26844.1| electron transport complex protein RnfC [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 505

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD----------ECIDCGVCEPECPVD 53
           +NCI C    C   CP++   E   + + H +          +CI+CG+CE  CP D
Sbjct: 388 KNCIRC--AACSYSCPMNLLPEQLYWYSKHSNHEKTQIYNIQDCIECGICEQVCPSD 442


>gi|90422214|ref|YP_530584.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90104228|gb|ABD86265.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 606

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +VT  C  C+   C+ + CP     D ++EG + + I P  CI C +C   C VD IK
Sbjct: 544 IVTGQCTACQ--SCMNLGCPALTWSDQWFEGRHRVKIDPALCIGCTLCAQVCTVDCIK 599


>gi|325281676|ref|YP_004254218.1| ferredoxin-type protein [Odoribacter splanchnicus DSM 20712]
 gi|324313485|gb|ADY34038.1| ferredoxin-type protein [Odoribacter splanchnicus DSM 20712]
          Length = 505

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 13/59 (22%)

Query: 5   VTENCILCKHTD------CVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
           V ENCI+  +TD      C E CP        +  G    +++PD C+ CG CE  CPV
Sbjct: 414 VRENCIV--NTDETSCGACSEHCPTQAVTMIPYKNGLTIPSVNPDICVGCGGCEYVCPV 470


>gi|312880247|ref|ZP_07740047.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
 gi|310783538|gb|EFQ23936.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
          Length = 387

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C+   C EVCPVD     ++   +  + C+ C  C   CP  A+K    P L  W++
Sbjct: 328 CVRCRV--CQEVCPVDAL-AWDDGPVVDSNRCVQCLCCHEMCPTGAMKAAANP-LARWVQ 383


>gi|312883748|ref|ZP_07743468.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368598|gb|EFP96130.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 196

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|304313913|ref|YP_003849060.1| formate dehydrogenase, alpha chain [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587372|gb|ADL57747.1| predicted formate dehydrogenase, alpha chain [Methanothermobacter
           marburgensis str. Marburg]
          Length = 887

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 7   ENCILCKHTDCVEVC------PVDCFYEGEN-----FLA--IHPDECIDCGVCEPECPVD 53
           + CILC    CV VC       VD  Y G +     F+   I    C+ CG C   CPV 
Sbjct: 149 DKCILCG--ICVRVCRGLGAEAVDFAYRGHDTRIATFMDRDILDSSCVSCGECVEACPVG 206

Query: 54  AIKPDTE-PGLEL 65
           A+ P TE P  E+
Sbjct: 207 ALLPRTERPSTEV 219


>gi|302391326|ref|YP_003827146.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203403|gb|ADL12081.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 423

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CPVD     +N   I  +ECI+CGVC   CP+D I+ 
Sbjct: 228 CPVDAITIEDNLAVIDYEECINCGVCAEACPMDTIEA 264



 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 22/72 (30%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGE---------NFLAIHPD---------ECIDCGVC 46
           E CI C++  CVEVCP D     EGE         N  A   D         EC+ CGVC
Sbjct: 324 EVCIECEN--CVEVCPTDAIQSKEGETEEAEKTNSNDAAEEDDHECSIYITEECVGCGVC 381

Query: 47  EPECPVDAIKPD 58
             ECPVDAI  +
Sbjct: 382 VEECPVDAISGE 393



 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +TE C+ C    CVE CPVD    E      I P+ CI+C  C   CP DAI+   E   
Sbjct: 292 ITEECVGCGV--CVEECPVDAISSEDGEIHNIDPEVCIECENCVEVCPTDAIQS-KEGET 348

Query: 64  ELWLKINSEYATQ 76
           E   K NS  A +
Sbjct: 349 EEAEKTNSNDAAE 361


>gi|291276488|ref|YP_003516260.1| putative ferredoxin [Helicobacter mustelae 12198]
 gi|290963682|emb|CBG39514.1| putative ferredoxin [Helicobacter mustelae 12198]
          Length = 83

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    C E CP     EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLIDEECIACDA--CREECPNSAIEEGDPIYMIDPDLCTECVGFYDEPSCVAVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IIPD 62


>gi|241663771|ref|YP_002982131.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|240865798|gb|ACS63459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 719

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV  CP     +      LA+    C+ CG+CE  CP  AI
Sbjct: 589 ERCTLC--MACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAI 637



 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 17  CVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CV+VC        + +G   + + P+ C+ CG C   CP  AI
Sbjct: 339 CVDVCSASAIASQWKDGRGSVRVTPNLCVGCGACTTACPTGAI 381


>gi|256422828|ref|YP_003123481.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
 gi|256037736|gb|ACU61280.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
          Length = 171

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 21/91 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E EN      F  I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVGCYL--CAAACPVDCIALQATEDENGRRYPEFFRINFSRCIFCGYCEEACPTYAIQ 106

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESL 87
               P  E+     +EY  Q  ++  +KE L
Sbjct: 107 --LTPDFEM-----AEYRRQ--DLVYEKEDL 128


>gi|78222455|ref|YP_384202.1| ferredoxin family protein [Geobacter metallireducens GS-15]
 gi|78193710|gb|ABB31477.1| Ferredoxin family protein [Geobacter metallireducens GS-15]
          Length = 96

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E CI C    CV VCP   F  +G        D C++CG C   CPV AI+ D+  G
Sbjct: 18 EACIGCGM--CVAVCPHGVFALQGNKAEMQDFDACMECGACAVNCPVGAIEVDSGVG 72


>gi|324999411|ref|ZP_08120523.1| formate dehydrogenase beta subunit [Pseudonocardia sp. P1]
          Length = 346

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 169 CKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVI 216


>gi|256822167|ref|YP_003146130.1| RnfABCDGE type electron transport complex subunit B [Kangiella
           koreensis DSM 16069]
 gi|256795706|gb|ACV26362.1| electron transport complex, RnfABCDGE type, B subunit [Kangiella
           koreensis DSM 16069]
          Length = 195

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGAPKLMHTVIIDECTGCDLCVEPCPVDCI 159


>gi|163744893|ref|ZP_02152253.1| 4Fe-4S binding domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381711|gb|EDQ06120.1| 4Fe-4S binding domain protein [Oceanibulbus indolifex HEL-45]
          Length = 254

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCDDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGAREMDVAAGV 138


>gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Aeropyrum pernix K1]
 gi|116063262|dbj|BAA81623.2| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Aeropyrum pernix K1]
          Length = 233

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           V + C  C +  CV+VCPV   Y  E+ + +  D+ CI CG C   CP  A
Sbjct: 101 VPKQCNHCDNPSCVDVCPVKATYVNEDGIVLVDDDLCIGCGACIQNCPYGA 151


>gi|27366362|ref|NP_761890.1| electron transport complex protein RnfB [Vibrio vulnificus CMCP6]
 gi|37679375|ref|NP_933984.1| electron transport complex protein RnfB [Vibrio vulnificus YJ016]
 gi|320156873|ref|YP_004189252.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
 gi|33301651|sp|Q8D889|RNFB_VIBVU RecName: Full=Electron transport complex protein rnfB
 gi|71153697|sp|Q7MM82|RNFB_VIBVY RecName: Full=Electron transport complex protein rnfB
 gi|27362563|gb|AAO11417.1| Electron transport complex protein rnfB [Vibrio vulnificus CMCP6]
 gi|37198118|dbj|BAC93955.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Vibrio
           vulnificus YJ016]
 gi|319932185|gb|ADV87049.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
          Length = 198

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|323475129|gb|ADX85735.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus REY15A]
 gi|323477861|gb|ADX83099.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           HVE10/4]
          Length = 167

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K
Sbjct: 54  MIRLYKDVCIGC--TLCALICPADAMKMVTQSGKKFPQINYGRCVFCGFCVDVCPVDALK 111


>gi|258542561|ref|YP_003187994.1| glutamate synthase (NADPH) small subunit [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633639|dbj|BAH99614.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636698|dbj|BAI02667.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639751|dbj|BAI05713.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642807|dbj|BAI08762.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645862|dbj|BAI11810.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648915|dbj|BAI14856.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651902|dbj|BAI17836.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654959|dbj|BAI20886.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 584

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C   +C   CP         G+ + A+  D C  C VC  +CP  AI+ D EP
Sbjct: 508 NCFECD--NCYASCPEQAITRLGPGKGY-AVAMDMCTGCAVCAEQCPCHAIEMDPEP 561


>gi|254451106|ref|ZP_05064543.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
 gi|198265512|gb|EDY89782.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
          Length = 649

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           LC H+        +C+ VCP          ++I P  C  CG C   CP  AI  D
Sbjct: 268 LCAHSRAEKPACSNCLNVCPTGAILSAGEVVSIDPLICAGCGACSAVCPSGAISYD 323


>gi|187929661|ref|YP_001900148.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187726551|gb|ACD27716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
          Length = 719

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV  CP     +      LA+    C+ CG+CE  CP  AI
Sbjct: 589 ERCTLC--MACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAI 637


>gi|150008159|ref|YP_001302902.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
 gi|255015113|ref|ZP_05287239.1| putative nitroreductase [Bacteroides sp. 2_1_7]
 gi|149936583|gb|ABR43280.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
          Length = 286

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSV 57


>gi|134094633|ref|YP_001099708.1| putative iron-sulfur binding protein [Herminiimonas arsenicoxydans]
 gi|133738536|emb|CAL61581.1| putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 699

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 11  LCKHTD--------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDT 59
           LC H+         C+E+C  +      N + ++P+ C  CG C   CP  A+    P T
Sbjct: 317 LCAHSRNGKIGCNACIEICSAEAISHNGNHVKVNPNLCAGCGACTTVCPSGAMAYAYPRT 376

Query: 60  E 60
           E
Sbjct: 377 E 377



 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +  N   L      C+ CG+CE  CP +AI
Sbjct: 570 CTLC--MSCVGACPESALTDNANAPQLRFIEKNCVQCGLCEKTCPENAI 616


>gi|91786836|ref|YP_547788.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696061|gb|ABE42890.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 695

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV  CP     +      L      C+ CG+C   CP DAI
Sbjct: 560 VNTDTCTLC--LSCVSACPASALQDNPERPQLKFIEKNCVQCGLCAVTCPEDAI 611


>gi|332978350|gb|EGK15075.1| electron transport complex [Psychrobacter sp. 1501(2011)]
          Length = 275

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD     G++   I  D C  C +C P CPVD I
Sbjct: 113 DDCIGC--TKCIPACPVDAIVGTGKHMHTIISDLCTGCELCLPPCPVDCI 160


>gi|303244140|ref|ZP_07330478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302485525|gb|EFL48451.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 64

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 16 DCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +C + CP++ F  +GE  +  H +EC  CGVCE  CP  A+K
Sbjct: 19 ECEKNCPMEVFEIDGEKVVVAHEEECTGCGVCEDVCPTGAVK 60


>gi|227828038|ref|YP_002829818.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.14.25]
 gi|227830775|ref|YP_002832555.1| NADH dehydrogenase subunit I [Sulfolobus islandicus L.S.2.15]
 gi|229579671|ref|YP_002838070.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.G.57.14]
 gi|229581663|ref|YP_002840062.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.N.15.51]
 gi|229585307|ref|YP_002843809.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.27]
 gi|238620268|ref|YP_002915094.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.4]
 gi|284998289|ref|YP_003420057.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.D.8.5]
 gi|227457223|gb|ACP35910.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.S.2.15]
 gi|227459834|gb|ACP38520.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           M.14.25]
 gi|228010386|gb|ACP46148.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012379|gb|ACP48140.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020357|gb|ACP55764.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           M.16.27]
 gi|238381338|gb|ACR42426.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus M.16.4]
 gi|284446185|gb|ADB87687.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.D.8.5]
          Length = 167

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K
Sbjct: 54  MIRLYKDVCIGC--TLCALICPADAMKMVTQSGKKFPQINYGRCVFCGFCVDVCPVDALK 111


>gi|116515045|ref|YP_802674.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285559|sp|Q057W8|NUOI_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116256899|gb|ABJ90581.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 181

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 16/68 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCF-----------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           +E C+ C    C  VCPV+C            +  ++F  I+   CI CG+CE  CP  A
Sbjct: 57  SERCVACNL--CSAVCPVNCISLKKSEEKNGRWYAKSF-QINLSRCIFCGLCEEACPTMA 113

Query: 55  IK--PDTE 60
           I+  PD E
Sbjct: 114 IQLTPDIE 121


>gi|291546307|emb|CBL19415.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. SR1/5]
          Length = 340

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C+  CP        G++F  I  D+CI CG C+  CP DAI     
Sbjct: 115 YEVSNMCRGCVAHPCLLTCPKGAISMVNGKSF--IDQDKCIHCGRCKAVCPYDAIAHKER 172

Query: 61  P 61
           P
Sbjct: 173 P 173


>gi|281357693|ref|ZP_06244180.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
 gi|281315950|gb|EFA99976.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
          Length = 269

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +E CI C    C++ CP      GE    +  D+CI+CG C   CP +AI
Sbjct: 10 SEACIRCGF--CIDDCPTCVLEMGEAGPQVREDQCIECGHCVSVCPTEAI 57


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C+ C  T C   CPV     E +    +H ++CI CG C   C   AIK D
Sbjct: 567 VIEEKCVGC--TACKRACPVGAITGEVKQKHFVHQEKCIKCGQCFSACKFSAIKKD 620


>gi|91201718|emb|CAJ74778.1| strongly similar to ferredoxin [Candidatus Kuenenia
          stuttgartiensis]
          Length = 56

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + E CI C    C   CPV+   E  +   I    C DCG C   CPVDAI
Sbjct: 1  MAHSINEECINCAA--CESECPVEAISEAGDVRVIDESTCTDCGNCVSVCPVDAI 53


>gi|38704092|ref|NP_311370.2| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|168748463|ref|ZP_02773485.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4113]
 gi|168756250|ref|ZP_02781257.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4401]
 gi|168761087|ref|ZP_02786094.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4501]
 gi|168768570|ref|ZP_02793577.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4486]
 gi|168773608|ref|ZP_02798615.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4196]
 gi|168778444|ref|ZP_02803451.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4076]
 gi|168787824|ref|ZP_02812831.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC869]
 gi|168798849|ref|ZP_02823856.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC508]
 gi|195936624|ref|ZP_03082006.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208807942|ref|ZP_03250279.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4206]
 gi|208813253|ref|ZP_03254582.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4045]
 gi|208821290|ref|ZP_03261610.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4042]
 gi|209397372|ref|YP_002271950.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4115]
 gi|217327252|ref|ZP_03443335.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. TW14588]
 gi|254794426|ref|YP_003079263.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|261223086|ref|ZP_05937367.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261259362|ref|ZP_05951895.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          FRIK966]
 gi|187770591|gb|EDU34435.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4196]
 gi|188017141|gb|EDU55263.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4113]
 gi|189003522|gb|EDU72508.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4076]
 gi|189356587|gb|EDU75006.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4401]
 gi|189362213|gb|EDU80632.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4486]
 gi|189368471|gb|EDU86887.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4501]
 gi|189372351|gb|EDU90767.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC869]
 gi|189378564|gb|EDU96980.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC508]
 gi|208727743|gb|EDZ77344.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4206]
 gi|208734530|gb|EDZ83217.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4045]
 gi|208741413|gb|EDZ89095.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4042]
 gi|209158772|gb|ACI36205.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4115]
 gi|217319619|gb|EEC28044.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. TW14588]
 gi|254593826|gb|ACT73187.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|320188813|gb|EFW63472.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. EC1212]
 gi|320640985|gb|EFX10469.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. G5101]
 gi|320646267|gb|EFX15194.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H- str. 493-89]
 gi|320651773|gb|EFX20153.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H- str. H 2687]
 gi|320657158|gb|EFX24967.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. 3256-97
          TW 07815]
 gi|320662764|gb|EFX30096.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320667804|gb|EFX34715.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. LSU-61]
 gi|326340276|gb|EGD64080.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. 1125]
 gi|326344961|gb|EGD68705.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. 1044]
          Length = 205

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   CV+VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCVQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|84490228|ref|YP_448460.1| hypothetical protein Msp_1447 [Methanosphaera stadtmanae DSM 3091]
 gi|84373547|gb|ABC57817.1| EhbK [Methanosphaera stadtmanae DSM 3091]
          Length = 451

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           CVEVCP D     +  + ++ D+C+ C  C   CPV+AI P T P   L +KI S Y+  
Sbjct: 336 CVEVCPKDALTIEDKEVKLNFDKCVLCEKCGIYCPVNAI-PKTSP---LKMKIQSGYSMI 391

Query: 77  WPNI 80
             N+
Sbjct: 392 NNNL 395


>gi|20093897|ref|NP_613744.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886838|gb|AAM01674.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 252

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 21/40 (52%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CVEVCPVD      +   I  D CI CG C   CP  AIK
Sbjct: 205 CVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPTGAIK 244



 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ CK   C E CPVD   E    N   +  D C+ C +C   CPVDAIK
Sbjct: 47 ERCVGCKT--CYEECPVDALTEPDSTNPPEVDHDACVRCRLCAKSCPVDAIK 96



 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 11/72 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI---KPDTEP 61
           + CI C+   C ++CPV    E  N   L I  D+CI C  CE  CPVDAI   +  T P
Sbjct: 133 DRCIACRL--CEQICPV----EAPNIDKLRIDEDKCIGCKACEHACPVDAIVIERTLTPP 186

Query: 62  GLELWLKINSEY 73
             E  ++++ + 
Sbjct: 187 EFEREIELDQDM 198


>gi|116623401|ref|YP_825557.1| cyclic nucleotide-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226563|gb|ABJ85272.1| cyclic nucleotide-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 755

 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           ++V  +C  C    C+  CPV      ++   +  D CI CG C  +CP
Sbjct: 509 FLVATSCRACMDPLCMTRCPVGSIRRKDSLDIVIEDWCIGCGNCAIDCP 557


>gi|284164399|ref|YP_003402678.1| NADH-quinone oxidoreductase, chain I [Haloterrigena turkmenica
          DSM 5511]
 gi|284014054|gb|ADB60005.1| NADH-quinone oxidoreductase, chain I [Haloterrigena turkmenica
          DSM 5511]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D          +GE +  +H  +C+ C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVTNDQRQGEQY-NLHIGQCVYCRLCEEVCPVDAI 97


>gi|242281209|ref|YP_002993338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124103|gb|ACS81799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 139

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHP-DECIDCGVCEPECPVDAIKPDT 59
           T  V + C+ C    C EVCP        +    IH  D CI CG C   CPVDAI  D 
Sbjct: 47  TGFVAKVCMACSPAPCAEVCPTGAMRGRKKGGGVIHKKDLCIRCGKCAEACPVDAIYLDL 106

Query: 60  E 60
           +
Sbjct: 107 K 107


>gi|237734473|ref|ZP_04564954.1| electron transport complex [Mollicutes bacterium D7]
 gi|229382293|gb|EEO32384.1| electron transport complex [Coprobacillus sp. D7]
          Length = 442

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV+VCP+              + ENFL +H ++C++CG C   CP
Sbjct: 367 CIHCGR--CVDVCPIGLIPQLLYRYARTGDKENFLKVHGNDCMECGCCTFTCP 417


>gi|242309592|ref|ZP_04808747.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
 gi|239523593|gb|EEQ63459.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
          Length = 189

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
           V  +C +C+HT CV VCP    F + +  + I  ++C+ C  C   CP +A  + P+T+
Sbjct: 55  VRHSCEMCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNARYVNPETK 113


>gi|149176111|ref|ZP_01854727.1| molybdopterin oxidoreductase, iron sulfur subunit [Planctomyces
           maris DSM 8797]
 gi|148844978|gb|EDL59325.1| molybdopterin oxidoreductase, iron sulfur subunit [Planctomyces
           maris DSM 8797]
          Length = 581

 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--H-PDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C++ CPV+  YE +    I  H  D+C  C  C   CP D  K  ++ 
Sbjct: 133 VTTACHHCLDPGCMQACPVNA-YEKDPITGIVRHLDDQCFGCQYCTLACPYDVPKYHSKK 191

Query: 62  GL 63
           G+
Sbjct: 192 GI 193


>gi|89897348|ref|YP_520835.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336796|dbj|BAE86391.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 175

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C+   C E CPV  + + E+ + +   E CI CG+C   CP +A K + +
Sbjct: 55  LSHACMHCEKPACAEACPVKAYTKREDGIVVQDHEKCIGCGMCVSACPYEAPKLNKD 111


>gi|296186485|ref|ZP_06854888.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|296048932|gb|EFG88363.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 104

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
          + CI C    C++VCP    Y  EN  A   + DEC  C  C  EC V AIK
Sbjct: 8  DKCIKC--GKCIKVCPGSLIYADENKKAFIKYEDECWGCTACLKECGVSAIK 57


>gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 489

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV   C+ C  T C  VCPV C   + +    I  + CI CG C   C   AI
Sbjct: 435 FVVAAKCVGC--TACARVCPVSCISGKAKEVHLIDQNSCIKCGACIERCKFGAI 486


>gi|257372947|ref|YP_003175721.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257167671|gb|ACV49363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 257

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           M+Y  T  C  C++  CV+VCPV+  Y+ E+  + I  D+CI C  C   CP +A
Sbjct: 64  MSYQPTA-CQHCENAPCVKVCPVNATYKREDGIVEIDYDKCIGCRYCMAACPYNA 117


>gi|282599783|ref|ZP_06257365.1| tetrathionate reductase complex, subunit B [Providencia rustigianii
           DSM 4541]
 gi|282567821|gb|EFB73356.1| tetrathionate reductase complex, subunit B [Providencia rustigianii
           DSM 4541]
          Length = 250

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ E+ + +  +E C+ C  C   CP DA
Sbjct: 104 LCNHCDNPPCVPVCPVQATYQREDGIVVVDNERCVGCAYCVQACPYDA 151


>gi|15803004|ref|NP_289034.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933]
 gi|291283701|ref|YP_003500519.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. CB9615]
 gi|12516866|gb|AAG57591.1|AE005478_1 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
 gi|13362813|dbj|BAB36766.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|209763668|gb|ACI80146.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763670|gb|ACI80147.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763672|gb|ACI80148.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763674|gb|ACI80149.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763676|gb|ACI80150.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|290763574|gb|ADD57535.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. CB9615]
          Length = 218

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   CV+VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCVQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|238786898|ref|ZP_04630699.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
 gi|238725266|gb|EEQ16905.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
          Length = 205

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D 
Sbjct: 59  FAYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|319936847|ref|ZP_08011259.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
 gi|319808115|gb|EFW04687.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
          Length = 366

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + CI C    C+++C  D     ++  +I+ D+C+ CG C   CP DAIK   +   
Sbjct: 190 VVQDLCIGCGQ--CIKICAHDAPTITDHKASINHDKCVGCGRCIGVCPKDAIKASMDEAN 247

Query: 64  ELWLKINSEY 73
           ++     +EY
Sbjct: 248 DILNYKIAEY 257


>gi|295106199|emb|CBL03742.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 206

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C +VCP    ++      +++  D+C+ CG C   CP +A K D 
Sbjct: 60  SYPLSLSCNHCDDPACTKVCPTGAMHKDAETGLVSVDADKCVGCGYCHMACPYNAPKVDR 119

Query: 60  EPG 62
             G
Sbjct: 120 SKG 122


>gi|262381260|ref|ZP_06074398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296437|gb|EEY84367.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 286

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSV 57


>gi|150402634|ref|YP_001329928.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033664|gb|ABR65777.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 252

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          YV T  C+ C+   C EVCPV    E   +N   I P++C+ C +C   CPV AI
Sbjct: 42 YVETNKCVRCEL--CYEVCPVQAITEPSVKNPAEIIPEKCVKCEICAKTCPVGAI 94



 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           NC++C      E+CPV      +  + +   +CI CG CE  CPV AI
Sbjct: 203 NCMVCS-----EICPVGAIVYEDGSMKLDDKKCIFCGKCEKNCPVSAI 245


>gi|32266484|ref|NP_860516.1| ferredoxin [Helicobacter hepaticus ATCC 51449]
 gi|32262535|gb|AAP77582.1| ferredoxin [Helicobacter hepaticus ATCC 51449]
          Length = 83

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++   CI C    C E CP     EG+   +I PD C +C        C   CPVDA
Sbjct: 1  MSLMINNECIACDA--CAEECPNGAIEEGDPIYSIDPDVCTECVGSYDEPSCLSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IIPD 62


>gi|330997523|ref|ZP_08321371.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
          11841]
 gi|329570468|gb|EGG52195.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
          11841]
          Length = 387

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY---EGENFL--AIHPDECIDCGVCEPECPVDAIKPD 58
           +T+    C    CV++CP  C     + E FL      + CI CG+CE  CP+   K  
Sbjct: 3  AITDKAKCCGCNACVQICPQKCIEMNPDSEGFLYPKTSKENCIQCGLCERVCPLGEPKSK 62

Query: 59 TEP 61
           EP
Sbjct: 63 REP 65


>gi|225175969|ref|ZP_03729961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168557|gb|EEG77359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 369

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C +C  + C++ CP D     E    I  D+CI CG C   CP  AIK
Sbjct: 191 VKGEGCKVC--STCLKWCPADAILIMEETAEIDHDKCIGCGECTVVCPTRAIK 241


>gi|167756755|ref|ZP_02428882.1| hypothetical protein CLORAM_02302 [Clostridium ramosum DSM 1402]
 gi|167702930|gb|EDS17509.1| hypothetical protein CLORAM_02302 [Clostridium ramosum DSM 1402]
          Length = 442

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV+VCP+              + ENFL +H ++C++CG C   CP
Sbjct: 367 CIHCGR--CVDVCPIGLIPQLLYRYARTGDKENFLKVHGNDCMECGCCTFTCP 417


>gi|147920357|ref|YP_685870.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110621266|emb|CAJ36544.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 130

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 17  CVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CV VCPVD   YE +  + I    C+ CG C   CP  AI+
Sbjct: 85  CVSVCPVDAISYEHDWQVTIDKAACVQCGTCTHACPTSAIR 125


>gi|78045112|ref|YP_358958.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997227|gb|ABB16126.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 144

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+
Sbjct: 56  ITIEQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIR 109


>gi|24375838|ref|NP_719881.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
 gi|24350797|gb|AAN57325.1|AE015869_1 anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
          Length = 205

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C +  CV+ CP    Y+      + ++ D CI C  C   CP DA  P 
Sbjct: 62  FAYYISISCNHCSNPVCVKACPTGAMYKERSTGLVKVNQDLCIGCESCARACPYDA--PQ 119

Query: 59  TEPGLELWLK 68
            +P  ++  K
Sbjct: 120 IDPQRKVMTK 129


>gi|301309723|ref|ZP_07215662.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300831297|gb|EFK61928.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 286

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSV 57


>gi|149190374|ref|ZP_01868646.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
 gi|148835753|gb|EDL52718.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
          Length = 193

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|71065158|ref|YP_263885.1| NADH dehydrogenase subunit I [Psychrobacter arcticus 273-4]
 gi|110287768|sp|Q4FU57|NUOI_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71038143|gb|AAZ18451.1| NADH dehydrogenase I, subunit I [Psychrobacter arcticus 273-4]
          Length = 182

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 21/91 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESL 87
               P  E+     SEY  Q  ++  +KE L
Sbjct: 118 --MTPDFEM-----SEYVRQ--DLVYEKEHL 139


>gi|14521676|ref|NP_127152.1| formate dehydrogenase iron-sulfur subunit related protein
          [Pyrococcus abyssi GE5]
 gi|5458895|emb|CAB50382.1| Oxidoreductase iron-sulfur protein [Pyrococcus abyssi GE5]
          Length = 164

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          NC  C+   C+EVCP    Y   +N +A  P +CI C +C   CP    K D
Sbjct: 45 NCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLD 96


>gi|127511178|ref|YP_001092375.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636473|gb|ABO22116.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 231

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  V   C  C +  C +VCPV+  Y+   +  + I  +ECI C +C   CP  A + D
Sbjct: 81  TLAVPNQCNQCDNPVCTQVCPVEATYKRKEDGIVVIDHEECIHCQLCVDACPYGARRKD 139


>gi|126641075|ref|YP_001084059.1| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  ++ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 1  MKAIIREDECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 55


>gi|303256259|ref|ZP_07342275.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
 gi|302860988|gb|EFL84063.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
          Length = 450

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
          + ++  +NC+ C    C + CPVD    G   +  I  D C+ CG C   CP  AI+
Sbjct: 35 IIHINKDNCVGCD--TCRKFCPVDAISGGLGAIHKIRDDACVSCGQCLSACPFGAIE 89


>gi|294794792|ref|ZP_06759927.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|294454154|gb|EFG22528.1| conserved domain protein [Veillonella sp. 3_1_44]
          Length = 65

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG+    I    CI CG C   CPV A+K
Sbjct: 4  LKFNIDDTCVKCGA--CAEDCPVQCITEGKTRFIIGKG-CISCGDCYSICPVGAVK 56


>gi|293609588|ref|ZP_06691890.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828040|gb|EFF86403.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 87

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCDM--CLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|257453974|ref|ZP_05619250.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus
           SK60]
 gi|257448639|gb|EEV23606.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus
           SK60]
          Length = 183

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 61  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 118

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 119 MTPDFELG---------EYNRQ--NLVYEKEHL 140


>gi|152990327|ref|YP_001356049.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
 gi|151422188|dbj|BAF69692.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
          Length = 354

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  +CP D     E  +AI+ D+CI+CG C   CP +A+
Sbjct: 22 CEAICPADAIETKEAGVAIYQDKCIECGGCVGVCPTEAL 60


>gi|110667600|ref|YP_657411.1| NADH dehydrogenase-like complex, subunit I [Haloquadratum walsbyi
          DSM 16790]
 gi|109625347|emb|CAJ51769.1| NADH dehydrogenase-like complex, subunit I [Haloquadratum walsbyi
          DSM 16790]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C +VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CEKVCPNDTIQIVQDDKRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|331000390|ref|ZP_08324069.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
 gi|329571980|gb|EGG53652.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
          Length = 447

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
          + ++  +NC+ C    C + CPVD    G   +  I  D C+ CG C   CP  AI+
Sbjct: 32 IIHINKDNCVGCD--TCRKFCPVDAISGGLGAIHKIRDDACVSCGQCLSACPFGAIE 86


>gi|301027423|ref|ZP_07190760.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300394931|gb|EFJ78469.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 162

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|255523553|ref|ZP_05390521.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|255512810|gb|EET89082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
          Length = 107

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
          + CI C    C++VCP    Y  EN  A   + DEC  C  C  EC V AIK
Sbjct: 11 DKCIKC--GKCIKVCPGSLIYADENKKAFIKYEDECWGCTACLKECGVSAIK 60


>gi|288574064|ref|ZP_06392421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569805|gb|EFC91362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 354

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C+ C    C   CPV           I  D CI CG C   CP  AI  D    +  +
Sbjct: 192 EKCVGCGR--CFRNCPVKAISMTGGKAVIDKDVCIGCGECLTVCPASAISLDWRTDVVQF 249

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 250 HRRMAEYA 257


>gi|222099632|ref|YP_002534200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572022|gb|ACM22834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
          Length = 366

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YVV E C+ C    C + CPV           I  D+CI CG C   C   A+ P  +  
Sbjct: 198 YVVEEKCVACG--TCAKFCPVGAITV-TKVARIDYDKCIGCGQCIAMCSYGAMSPKWDSS 254

Query: 63  LELWLKINSEYA 74
            +   K  +EYA
Sbjct: 255 TDSLSKKMAEYA 266


>gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 533

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 37 PDECIDCGVCEPECPVDAIKPD 58
          PD C  CG C+P+CP  AI  D
Sbjct: 6  PDNCYSCGTCKPQCPTGAIHLD 27


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C + C V   Y E +    I P++C+ C  C   CP +AI
Sbjct: 574 ERCIACGL--CAKACTVQAIYGEPKKPYRIDPEKCVKCAACVARCPRNAI 621


>gi|17547095|ref|NP_520497.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17429396|emb|CAD16083.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 719

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +      L++    C+ CG+C+  CP DAI
Sbjct: 591 CTLC--MACVSACPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAI 637


>gi|294637339|ref|ZP_06715635.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda
           ATCC 23685]
 gi|291089496|gb|EFE22057.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda
           ATCC 23685]
          Length = 964

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKP-DTEPGLELWLKINSEYATQWPNITTKK 84
           F E    L ++P++C  CG+C   CPV   +P  TEP   + ++       + P++  +K
Sbjct: 738 FPETRYTLQVYPEDCTGCGLCVEACPVRHSEPGQTEPQRAISMQ------EKLPHLNAEK 791

Query: 85  ESL--------PSAAKMDGVKQKYEKYFSP 106
            +L        P  A++D    +  ++  P
Sbjct: 792 RALDWFEQLPWPDRARVDFSNVRGVQFLEP 821


>gi|269962089|ref|ZP_06176443.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
 gi|269833173|gb|EEZ87278.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
          Length = 197

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|242399111|ref|YP_002994535.1| Putative oxidoreductase, Fe-S subunit [Thermococcus sibiricus MM
           739]
 gi|242265504|gb|ACS90186.1| Putative oxidoreductase, Fe-S subunit [Thermococcus sibiricus MM
           739]
          Length = 183

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           V + C+ C    CV+ CPVD     E   A+  DE  CI+CG C   CP    +  T+ G
Sbjct: 62  VPQTCVQCPDYPCVKACPVDALSVNEKTGAVLVDEEKCIECGACITACPGKVPRIPTDKG 121


>gi|226329951|ref|ZP_03805469.1| hypothetical protein PROPEN_03864 [Proteus penneri ATCC 35198]
 gi|225200746|gb|EEG83100.1| hypothetical protein PROPEN_03864 [Proteus penneri ATCC 35198]
          Length = 154

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y +T +C  C+   CV+ CP    +  EG+  + +   +C+ CG C   CP  A + +
Sbjct: 70  FAYTLTISCNHCESPVCVKNCPTTAMHKREGDGIVRVDTSKCVGCGYCAWSCPYGAPQMN 129

Query: 59  TEPG 62
            E G
Sbjct: 130 EETG 133


>gi|871456|emb|CAA61208.1| putative alpha subunit of formate dehydrogenease
           [Methanothermobacter thermautotrophicus]
          Length = 887

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 7   ENCILCKHTDCVEVC------PVDCFYEGEN-----FLA--IHPDECIDCGVCEPECPVD 53
           + CILC    CV VC       VD  Y G +     F+   I    C+ CG C   CPV 
Sbjct: 149 DKCILCG--ICVRVCRGLGAEAVDFAYRGHDTRIATFMDRDILDSSCVSCGECVEACPVG 206

Query: 54  AIKPDTE-PGLEL 65
           A+ P TE P  E+
Sbjct: 207 ALLPRTERPSTEV 219


>gi|42527242|ref|NP_972340.1| ferredoxin, 2(4Fe-4S) [Treponema denticola ATCC 35405]
 gi|41817666|gb|AAS12251.1| ferredoxin, 2(4Fe-4S) [Treponema denticola ATCC 35405]
          Length = 56

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++  C  C    C   CPV+   E      I  D CI CG C   CPV+AI  +
Sbjct: 1  MAYKISNECTNCAA--CESECPVNAISEAGGKHVIDADTCISCGACAGVCPVEAISEE 56


>gi|54301686|ref|YP_131679.1| putative tetrathionate reductase, subunit B [Photobacterium
           profundum SS9]
 gi|46915106|emb|CAG21879.1| putative tetrathionate reductase, subunit B [Photobacterium
           profundum SS9]
          Length = 222

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV+VCPV   Y+ E+  + +    C+ C  C   CP DA
Sbjct: 109 LCNHCDNPPCVKVCPVQATYQREDGIVMVDNKRCVACAYCVQACPYDA 156


>gi|293406384|ref|ZP_06650310.1| oxidoreductase [Escherichia coli FVEC1412]
 gi|298382120|ref|ZP_06991717.1| oxidoreductase [Escherichia coli FVEC1302]
 gi|291426390|gb|EFE99422.1| oxidoreductase [Escherichia coli FVEC1412]
 gi|298277260|gb|EFI18776.1| oxidoreductase [Escherichia coli FVEC1302]
          Length = 163

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 56  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 109


>gi|284161826|ref|YP_003400449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Archaeoglobus profundus DSM 5631]
 gi|284011823|gb|ADB57776.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Archaeoglobus profundus DSM 5631]
          Length = 81

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4  VVTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VVT N   C +   CV VC  +     E FL I+ D+C  CG+C   CP+ A+
Sbjct: 22 VVTVNRFKCAYCGACVSVCKFNANELIETFLQIYEDKCTGCGICVKVCPMGAL 74


>gi|218701594|ref|YP_002409223.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218371580|emb|CAR19419.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli IAI39]
          Length = 162

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|330999804|ref|ZP_08323509.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329573807|gb|EGG55396.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 183

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +  C+ C +  C+ VCP   F +  +  + +  ++C  CG+C+  CP DAI
Sbjct: 59  SHACMHCSNPTCLAVCPAAAFTKRPDGIVVLDRNKCTSCGLCKEACPYDAI 109


>gi|319955037|ref|YP_004166304.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
 gi|319423697|gb|ADV50806.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
          Length = 378

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + +   C  C +  CVEVCPV   ++ E+ L  I  D C+ C  C   CP D  +
Sbjct: 228 FYMGTQCFHCDNPPCVEVCPVQATWKEEDGLVVIDYDWCVGCRYCMAACPYDGRR 282


>gi|298376411|ref|ZP_06986366.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266289|gb|EFI07947.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 286

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSV 57


>gi|284009327|emb|CBA76492.1| NADH-quinone oxidoreductase chain I [Arsenophonus nasoniae]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVGCISLQKAEQPDGRWYPEFFQINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|171060402|ref|YP_001792751.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170777847|gb|ACB35986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 743

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 18/60 (30%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAIK 56
           T+ C +C    CV  CP       E+ LA +P+          C+ CG+C   CP DAI+
Sbjct: 606 TQRCTMC--LSCVGACP-------ESALADNPERPQLRFIEKNCVQCGLCASTCPEDAIQ 656


>gi|152971333|ref|YP_001336442.1| putative oxidoreductase Fe-S binding subunit [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956182|gb|ABR78212.1| putative oxidoreductase, Fe-S subunit (anaerobically expressed
          gene) [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
          Length = 637

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 8  NCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          N I C+H +   CV  CP D   +  + + +  ++CI C  C   CP   ++    P
Sbjct: 29 NAITCRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFGVMQVVVTP 85


>gi|150006371|ref|YP_001301115.1| ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254881723|ref|ZP_05254433.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294776232|ref|ZP_06741717.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643688|ref|ZP_07998305.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
 gi|149934795|gb|ABR41493.1| electron transport complex protein RnfB [Bacteroides vulgatus ATCC
           8482]
 gi|254834516|gb|EET14825.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294449915|gb|EFG18430.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317384718|gb|EFV65680.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
          Length = 317

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KINSEYATQWPNITTKKESL 87
           ++ +  A   P +  +   +
Sbjct: 281 EVPAGEAAAKPAVKVEASKV 300


>gi|146303090|ref|YP_001190406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701340|gb|ABP94482.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 404

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 12  CKHTD---CVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C H D   C++ CP     + E   + I  ++CI CG C+  CP +A+
Sbjct: 59  CNHCDNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEAL 106


>gi|76801793|ref|YP_326801.1| NADH dehydrogenase-like complex, subunit I [Natronomonas
          pharaonis DSM 2160]
 gi|76557658|emb|CAI49241.1| NADH dehydrogenase-like complex, subunit I [Natronomonas
          pharaonis DSM 2160]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCP-------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP        D    GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVTDDMRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|60683111|ref|YP_213255.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
 gi|60494545|emb|CAH09344.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
          Length = 489

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y VT  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 112 VNYEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167


>gi|332969438|gb|EGK08461.1| ferredoxin [Psychrobacter sp. 1501(2011)]
          Length = 82

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C  VCP D  YEGE+   I+PD C +C        C   CP+D 
Sbjct: 1  MALMITDECINCDV--CEPVCPNDAIYEGEDIYEINPDLCTECVGHFDEPQCVEICPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPHD 62


>gi|331001428|ref|ZP_08325048.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329568310|gb|EGG50121.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 238

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDA 54
           ++  C  C    C+ VCPV    +   + A+  D  +CI CG C   CP DA
Sbjct: 101 LSIGCNHCSEPACIPVCPVKAISKEAKYGAVRVDSSKCISCGACRAACPWDA 152


>gi|260773217|ref|ZP_05882133.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
 gi|260612356|gb|EEX37559.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
          Length = 195

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|254487223|ref|ZP_05100428.1| 4Fe-4S binding domain protein [Roseobacter sp. GAI101]
 gi|214044092|gb|EEB84730.1| 4Fe-4S binding domain protein [Roseobacter sp. GAI101]
          Length = 221

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 53  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAAGV 111


>gi|156975236|ref|YP_001446143.1| electron transport complex protein RnfB [Vibrio harveyi ATCC
           BAA-1116]
 gi|166225088|sp|A7MVC6|RNFB_VIBHB RecName: Full=Electron transport complex protein rnfB
 gi|156526830|gb|ABU71916.1| hypothetical protein VIBHAR_02965 [Vibrio harveyi ATCC BAA-1116]
          Length = 197

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|53715176|ref|YP_101168.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|253566311|ref|ZP_04843765.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265767004|ref|ZP_06094833.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218041|dbj|BAD50634.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|251945415|gb|EES85853.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253381|gb|EEZ24857.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 489

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y VT  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 112 VNYEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167


>gi|113972005|ref|YP_735798.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|114045777|ref|YP_736327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113886689|gb|ABI40741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
 gi|113887219|gb|ABI41270.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 219

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y  +  C  C    CV+ CP    ++ ++   + +    CI CG C   CP DA + D
Sbjct: 75  FAYYTSIGCNHCSEPVCVKACPTGAMHKRKDNGLVLVESSICIGCGSCARACPYDAPQLD 134

Query: 59  TE 60
           T+
Sbjct: 135 TQ 136


>gi|325288954|ref|YP_004265135.1| hypothetical protein Sgly_0777 [Syntrophobotulus glycolicus DSM
          8271]
 gi|324964355|gb|ADY55134.1| hypothetical protein Sgly_0777 [Syntrophobotulus glycolicus DSM
          8271]
          Length = 89

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          MT  + +NC  C    C+ VCPV       + L ++ + CI+CG+C  +CPV  +
Sbjct: 1  MTIRILDNCPACGA--CLMVCPVKALAISGSKLTVN-ESCIECGLCIQQCPVQQL 52


>gi|322369190|ref|ZP_08043755.1| NADH-quinone oxidoreductase, chain I [Haladaptatus
          paucihalophilus DX253]
 gi|320550922|gb|EFW92571.1| NADH-quinone oxidoreductase, chain I [Haladaptatus
          paucihalophilus DX253]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVQDDQRNGEQY-NLHVGQCIYCRLCEEVCPVDAI 97


>gi|294793178|ref|ZP_06758324.1| conserved domain protein [Veillonella sp. 6_1_27]
 gi|294456123|gb|EFG24487.1| conserved domain protein [Veillonella sp. 6_1_27]
          Length = 65

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG+    I    CI CG C   CPV A+K
Sbjct: 4  LKFNIDDTCVKCGA--CAEDCPVQCITEGKTRFIIGKG-CISCGDCYSICPVGAVK 56


>gi|291528206|emb|CBK93792.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 507

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--- 59
           V + N I+ +   C + C +D     EN  A I  D+C+ CG C   CP  AI   +   
Sbjct: 163 VCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVNCPFGAIADKSQIF 222

Query: 60  ------EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
                 + G +++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 223 QTIRAIQSGEKVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|291525181|emb|CBK90768.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 507

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--- 59
           V + N I+ +   C + C +D     EN  A I  D+C+ CG C   CP  AI   +   
Sbjct: 163 VCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVNCPFGAIADKSQIF 222

Query: 60  ------EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
                 + G +++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 223 QTIRAIQSGEKVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|288957563|ref|YP_003447904.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288909871|dbj|BAI71360.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 688

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H        T C++VCP        + +AI P  C  CG C   CP  A
Sbjct: 280 LCAHSRSRKTGCTRCLDVCPTGAVTPNGDHVAIDPHVCAGCGSCAAVCPTGA 331



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV  CP     +  +   L+   D C+ CG+C   CP   I
Sbjct: 521 VDVEGCTLC--LACVGACPTGALLDNADKPMLSFAQDACVQCGLCRTTCPEKVI 572


>gi|225026051|ref|ZP_03715243.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
 gi|224956626|gb|EEG37835.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
          Length = 304

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C+ C H  C+E+CP        N + I+P  C  C  C  ECP  A++ + E
Sbjct: 59  EKCVRCHH--CMEICPKKAITFFSNEIKINPYICNGCQKCIEECPARALQAEGE 110


>gi|221633945|ref|YP_002523171.1| putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
 gi|221157195|gb|ACM06322.1| putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 282

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP--VDAIKP 57
           ++++ C  C H  C+E CP       E + + I  D C  CG C P CP  V A+ P
Sbjct: 94  MLSDVCKHCVHAGCMEACPTGAIIRTEFDTVVIQQDICNGCGYCVPACPFGVPALSP 150


>gi|239817035|ref|YP_002945945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803612|gb|ACS20679.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 713

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  ++C LC    CV  CP     + +N   L      C+ CG+C   CP +AI
Sbjct: 579 VNKDSCTLC--LACVSACPASALQDNQNAPQLRFIEKNCVQCGLCATTCPENAI 630


>gi|213861424|ref|ZP_03385894.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 133

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|212705024|ref|ZP_03313152.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
 gi|212671576|gb|EEB32059.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
          Length = 480

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C+  C             I P++C +CG+C   CP  AI
Sbjct: 116 YYVTDACQGCVARSCIGSCRFGAISFSRGRSTIDPEKCRNCGMCMDACPYHAI 168


>gi|158320132|ref|YP_001512639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158140331|gb|ABW18643.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 226

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 5   VTENCI--LCKHTD---CVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
           VT N I  LC H D   CV  CP++    Y+ +N + +H  E CI C  CE  CP   I 
Sbjct: 49  VTYNYISTLCNHCDDAPCVNACPLNPKAMYKSDNGITMHNHEACIGCRACEKACPYSVIS 108

Query: 57  -PDTEP 61
             +TEP
Sbjct: 109 FNETEP 114


>gi|15897266|ref|NP_341871.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus P2]
 gi|13813471|gb|AAK40661.1| NADH dehydrogenase subunit I (NuoI) [Sulfolobus solfataricus P2]
          Length = 188

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K
Sbjct: 75  MIRLYKDVCIGC--TLCALICPADAMKMVTESGKKFPQINYGRCVFCGFCVDVCPVDALK 132


>gi|284161789|ref|YP_003400412.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011786|gb|ADB57739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 185

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C+ C    CV+VCP+   Y+ E+  + +  D CI CG C   CP  A
Sbjct: 56  CLHCNDPLCVKVCPMKAVYKREDGIVLVDKDRCIGCGYCAFACPFGA 102


>gi|262373368|ref|ZP_06066647.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii
           SH205]
 gi|262313393|gb|EEY94478.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii
           SH205]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 21/91 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESL 87
               P  EL     +EY  Q  ++  +KE+L
Sbjct: 116 --MTPDFEL-----AEYVRQ--DLVYEKENL 137


>gi|261340669|ref|ZP_05968527.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus
           ATCC 35316]
 gi|296103962|ref|YP_003614108.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|288317083|gb|EFC56021.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus
           ATCC 35316]
 gi|295058421|gb|ADF63159.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098080|emb|CBK87170.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           +E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  SERCVACNL--CAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFELG 123


>gi|193214169|ref|YP_001995368.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroherpeton thalassium ATCC 35110]
 gi|193087646|gb|ACF12921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroherpeton thalassium ATCC 35110]
          Length = 81

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +TE+CI C    CV+ CP +     E+  AI+PD C +C        C   CP +A
Sbjct: 1  MALYITEDCISCGV--CVDECPNNAIDYAESGYAINPDLCTECVGDFDAPQCMENCPSEA 58

Query: 55 IKPD 58
          I+PD
Sbjct: 59 IQPD 62


>gi|153003731|ref|YP_001378056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027304|gb|ABS25072.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 309

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++++ C  C+   C+E CP       E   + + PD C  CG C   CP   I+   E G
Sbjct: 124 MMSDVCKHCERAGCLEACPTGAIVRTEFGSVYVQPDVCNGCGYCVSACPFGVIERREEDG 183


>gi|325122853|gb|ADY82376.1| ferredoxin [Acinetobacter calcoaceticus PHEA-2]
          Length = 87

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCDM--CLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|326402523|ref|YP_004282604.1| polysulfide reductase chain B [Acidiphilium multivorum AIU301]
 gi|325049384|dbj|BAJ79722.1| polysulfide reductase chain B [Acidiphilium multivorum AIU301]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +E C  C H  CV+ CP     ++ G N + +    C  C  C   CP D+
Sbjct: 55  SERCNHCSHATCVDACPTGASQYWNGSNIVVVDATRCTGCKACIAACPYDS 105


>gi|253999507|ref|YP_003051570.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. SIP3-4]
 gi|253986186|gb|ACT51043.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. SIP3-4]
          Length = 299

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 112 VAFIDEQTCIGC--TLCIQACPVDAILGASKQMHTVIADECTGCELCIAPCPVDCI 165


>gi|260588646|ref|ZP_05854559.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|331082003|ref|ZP_08331131.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541121|gb|EEX21690.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|330405598|gb|EGG85128.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 501

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C E+CP       +    I  ++CI CG C+  CP DAI     P
Sbjct: 115 YEVSNMCRGCVAHPCKEICPKGAISIIKGKSVIDQEKCIKCGKCKSVCPYDAIAKKERP 173


>gi|218706392|ref|YP_002413911.1| putative oxidoreductase [Escherichia coli UMN026]
 gi|300896220|ref|ZP_07114769.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300936168|ref|ZP_07151104.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|218433489|emb|CAR14392.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli UMN026]
 gi|300359954|gb|EFJ75824.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300458625|gb|EFK22118.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 162

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|94269697|ref|ZP_01291536.1| Electron-transferring-flavoprotein dehydrogenase [delta
           proteobacterium MLMS-1]
 gi|93451112|gb|EAT02047.1| Electron-transferring-flavoprotein dehydrogenase [delta
           proteobacterium MLMS-1]
          Length = 553

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C       C+  CP   + + GE     +P  C+ C  C+ +CP D I+
Sbjct: 485 ICREQCRAKYGAPCITFCPAGVYEQIGEQPRPANPSNCLHCKTCQRKCPYDNIR 538


>gi|33600231|ref|NP_887791.1| tetrathionate reductase subunit B [Bordetella bronchiseptica RB50]
 gi|33567829|emb|CAE31743.1| tetrathionate reductase subunit B [Bordetella bronchiseptica RB50]
          Length = 257

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+ + +  +E C+ CG C   CP DA
Sbjct: 112 LCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDA 159


>gi|85706216|ref|ZP_01037311.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85669380|gb|EAQ24246.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 260

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 86  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDAAEGV 144


>gi|304312247|ref|YP_003811845.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
 gi|301797980|emb|CBL46202.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
          Length = 175

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCP  C    +GE         F  I+   CI CG+CE  CP  AI+
Sbjct: 53  ERCVACNL--CASVCPPACISLQKGEREDGRWYPVFFRINFSRCIMCGMCEEACPTYAIQ 110

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 111 LTPDFEMG 118


>gi|298481197|ref|ZP_06999391.1| F420H2:quinone oxidoreductase [Bacteroides sp. D22]
 gi|298272771|gb|EFI14338.1| F420H2:quinone oxidoreductase [Bacteroides sp. D22]
          Length = 392

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 12 CKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          C  T C  +CP  C       EG  +  ++ + CI+CG+CE  CP+
Sbjct: 11 CGCTACFSICPKHCVEMKMDEEGFFYPFVNGNICIECGLCEKVCPI 56


>gi|258405760|ref|YP_003198502.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797987|gb|ACV68924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 524

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V E+C  C    C + CPV    +G    A+   EC++CG+C  +CP + I
Sbjct: 218 VGEHCTHCGR--CAQQCPVGIGEDG----AVAAGECLNCGLCVAQCPEEVI 262


>gi|226953545|ref|ZP_03824009.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244]
 gi|294649467|ref|ZP_06726891.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835723|gb|EEH68106.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244]
 gi|292824637|gb|EFF83416.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 21/91 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESL 87
               P  EL     +EY  Q  ++  +KE+L
Sbjct: 116 --MTPDFEL-----AEYVRQ--DLVYEKENL 137


>gi|223985321|ref|ZP_03635396.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
 gi|223962708|gb|EEF67145.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
          Length = 202

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           N I+     C + CPVD     EN +A I   +CI+CG C+  CP  AI
Sbjct: 153 NAIVVTERPCSQHCPVDAIRWDENGIAQIDETKCINCGACQAACPFGAI 201



 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +T+NC  C    C+  C  D    G +   I   +C +CG C   CP +AI     P
Sbjct: 105 ITDNCRKCMAKACLASCKFDAISMGLHRAQIDYTKCKECGACARSCPYNAIVVTERP 161


>gi|126460291|ref|YP_001056569.1| putative ATPase RIL [Pyrobaculum calidifontis JCM 11548]
 gi|126250012|gb|ABO09103.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
          Length = 589

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 12 CKHTDCVEVCPVD----CFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
          C H +CV+ CPV+      Y  E      I    CI CG+C  +CP DAI
Sbjct: 17 CGH-ECVKYCPVNKSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFDAI 65


>gi|114706714|ref|ZP_01439614.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
 gi|114537662|gb|EAU40786.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
          Length = 679

 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 18/56 (32%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           C LC    CV  CPVD        L  +PD+         C+ CG+C   CP +AI
Sbjct: 521 CTLC--MACVSACPVDA-------LRANPDKPQLRFVESACVQCGICSATCPENAI 567


>gi|86147960|ref|ZP_01066264.1| electron transport complex protein RnfB [Vibrio sp. MED222]
 gi|85834285|gb|EAQ52439.1| electron transport complex protein RnfB [Vibrio sp. MED222]
          Length = 197

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|84393395|ref|ZP_00992154.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|148977611|ref|ZP_01814187.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218708973|ref|YP_002416594.1| electron transport complex protein RnfB [Vibrio splendidus LGP32]
 gi|254807928|sp|B7VLT8|RNFB_VIBSL RecName: Full=Electron transport complex protein rnfB
 gi|84376004|gb|EAP92893.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|145963126|gb|EDK28394.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218321992|emb|CAV18005.1| Electron transport complex protein rnfB [Vibrio splendidus LGP32]
          Length = 197

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|323700506|ref|ZP_08112418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460438|gb|EGB16303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 185

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
           ++ +C  C++  C+ VCPV+ + + E+ + +H  E CI CG C   CP  A K
Sbjct: 55  LSLSCNHCENPACLNVCPVEAYTKREDGVVVHHQEKCIGCGNCIRSCPYGAPK 107


>gi|310657519|ref|YP_003935240.1| thiamine pyrophosphate protein domain-containing protein
           [Clostridium sticklandii DSM 519]
 gi|308824297|emb|CBH20335.1| Thiamine pyrophosphate protein domain protein TPP-binding
           [Clostridium sticklandii]
          Length = 593

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CI CK   C+   CP   F +     +I PD C+ C VC   CPV AI
Sbjct: 538 VDTDKCIGCKA--CIRTGCPAISFDKDNKKSSISPDSCVGCEVCLQVCPVKAI 588


>gi|282900998|ref|ZP_06308931.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194089|gb|EFA69053.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
           raciborskii CS-505]
          Length = 108

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDA--I 55
           M  +++E+ CI C    CV+VCP + F + E  +       +C  C +CE  CPVDA  +
Sbjct: 1   MIELISESACIQCNI--CVKVCPTNVFDKVEEGIPKIGRQSDCQTCFMCELYCPVDALYV 58

Query: 56  KPDTEPGLEL---WLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
            PD EP  ++    LK  +   +   NI   + SL S AK D   Q
Sbjct: 59  APDVEPLGKIDEQSLKEAALLGSYRKNIGWGR-SLSSTAKEDSTYQ 103


>gi|238923605|ref|YP_002937121.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
 gi|238875280|gb|ACR74987.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
          Length = 530

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--- 59
           V + N I+ +   C + C +D     EN  A I  D+C+ CG C   CP  AI   +   
Sbjct: 186 VCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVNCPFGAIADKSQIF 245

Query: 60  ------EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
                 + G +++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 246 QTIRAIQSGEKVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 292


>gi|153005757|ref|YP_001380082.1| electron-transferring-flavoprotein dehydrogenase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029330|gb|ABS27098.1| Electron-transferring-flavoprotein dehydrogenase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 606

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPEC 50
           +T+   E C  C    CVE+C  +    GE+ +     ++C+ CG C   C
Sbjct: 530 VTFRSAETCRACGRRACVEICSAEALRPGEDGVPGFDREKCVHCGACLWSC 580


>gi|83590257|ref|YP_430266.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83573171|gb|ABC19723.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 56

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C EVCP +     E  + + PDEC++CG C  ECP +AI  D
Sbjct: 16 CAEVCPAEAITLNEVAI-VDPDECLECGACVDECPNEAISLD 56


>gi|125972947|ref|YP_001036857.1| putative PAS/PAC sensor protein [Clostridium thermocellum ATCC
          27405]
 gi|256005703|ref|ZP_05430659.1| putative PAS/PAC sensor protein [Clostridium thermocellum DSM
          2360]
 gi|281417158|ref|ZP_06248178.1| putative PAS/PAC sensor protein [Clostridium thermocellum JW20]
 gi|125713172|gb|ABN51664.1| putative PAS/PAC sensor protein [Clostridium thermocellum ATCC
          27405]
 gi|255990334|gb|EEU00460.1| putative PAS/PAC sensor protein [Clostridium thermocellum DSM
          2360]
 gi|281408560|gb|EFB38818.1| putative PAS/PAC sensor protein [Clostridium thermocellum JW20]
 gi|316940817|gb|ADU74851.1| putative PAS/PAC sensor protein [Clostridium thermocellum DSM
          1313]
          Length = 556

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSEYA 74
          C+  CPV      +    I  DEC+ CG C   CP +A  I+ D E   +L LK +  YA
Sbjct: 18 CIRHCPVKSLKFTDGQAHIVRDECVLCGECYVVCPQNAKQIRSDVEKAKQLVLKYDV-YA 76

Query: 75 TQWPNITT 82
          +  P+   
Sbjct: 77 SIAPSFVA 84


>gi|323188717|gb|EFZ74002.1| hydrogenase-4 component A [Escherichia coli RN587/1]
          Length = 162

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIAASGENP 161


>gi|268610343|ref|ZP_06144070.1| hypothetical protein RflaF_12691 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C    C+  CP  C  E +    I  + C+ CG C   CPV A+
Sbjct: 153 YFVTDDCIRCGS--CLSDCPQSCI-ELKEKAVIRQENCLHCGNCAAVCPVGAV 202


>gi|222054905|ref|YP_002537267.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
 gi|221564194|gb|ACM20166.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
          Length = 442

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
          V+   CI C    C   CPVD     E     I+PD+CI C  C   CP  AI+
Sbjct: 18 VLEGKCIACG-ARCQSSCPVDAIEMNEAGEPVINPDKCIGCVKCVKVCPAQAIE 70


>gi|33595708|ref|NP_883351.1| tetrathionate reductase subunit B [Bordetella parapertussis 12822]
 gi|33565787|emb|CAE36331.1| tetrathionate reductase subunit B [Bordetella parapertussis]
          Length = 257

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+ + +  +E C+ CG C   CP DA
Sbjct: 112 LCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDA 159


>gi|255526337|ref|ZP_05393252.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296187010|ref|ZP_06855410.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509985|gb|EET86310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296048448|gb|EFG87882.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 327

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C+EVC  +     E+ + I  ++C  CG+C+ +CP  A+  D    ++L  K
Sbjct: 36 CMEVCKYEAITSSEDEIKIDNEKCKKCGLCKAQCPSQAVTIDNFGEIDLLKK 87


>gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi
           35000HP]
 gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC
 gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus
           ducreyi 35000HP]
          Length = 702

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDC-------FYEGENF---LAIHPDECIDCGVCEPECP 51
           NCI C  ++C + CPV         F   E+    +  H D CI+CGVC   CP
Sbjct: 384 NCIRC--SNCSDACPVSLLPQQLYWFARAEDHQKSMEYHLDACIECGVCAYVCP 435


>gi|311278762|ref|YP_003940993.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1]
 gi|308747957|gb|ADO47709.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           +E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  SERCVACNL--CAVACPVGCISLQKAEMQDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFELG 123


>gi|307596268|ref|YP_003902585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551469|gb|ADN51534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 263

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  C++  CV VCP    Y+   +  + I+ + CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFHCRNPACVTVCPTGAIYKRKEDGVVVINYEVCIGCRYCENACPYGNIIFDP 129

Query: 60  EPGLE 64
             G+ 
Sbjct: 130 VEGVS 134


>gi|303243653|ref|ZP_07329994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302485895|gb|EFL48818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 256

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPGLELW 66
           E ++ + P  CI CG+C  ECPVDAI KP      E+ 
Sbjct: 37 SERYIYVFPKRCIRCGLCYEECPVDAITKPSIRKPAEII 75



 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C    CV+ CPV+   E +  + I+   CI CG CE  CPV AI
Sbjct: 198 NDTCIKC--LSCVDECPVNAIKEIKEGVEINKSSCIFCGRCEKVCPVHAI 245


>gi|150399562|ref|YP_001323329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012265|gb|ABR54717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 140

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C+  CP D   + ++ + ++P++CI C +C   CPV AI
Sbjct: 34 RCMHCEDAPCIFACPKDAITKIDDKVVLNPEKCIGCALCIEACPVGAI 81


>gi|320195003|gb|EFW69632.1| putative oxidoreductase, Fe-S subunit [Escherichia coli WV_060327]
          Length = 162

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIAASGENP 161


>gi|238895928|ref|YP_002920664.1| putative oxidoreductase Fe-S binding subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548246|dbj|BAH64597.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 660

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 8   NCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           N I C+H +   CV  CP D   +  + + +  ++CI C  C   CP   ++    P
Sbjct: 52  NAITCRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFGVMQVVVTP 108


>gi|257784216|ref|YP_003179433.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
 gi|257472723|gb|ACV50842.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
          Length = 531

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y VT  C  C    C E+CP +     +    I  ++CI CG+C   CP  AI     P
Sbjct: 122 VYRVTNACQGCLAHPCREICPKEAISFVDKKAYIDQEKCIQCGMCFKVCPYQAIHHHVRP 181


>gi|90409769|ref|ZP_01217786.1| tetrathionate reductase, subunit B [Photobacterium profundum 3TCK]
 gi|90329122|gb|EAS45379.1| tetrathionate reductase, subunit B [Photobacterium profundum 3TCK]
          Length = 262

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV+VCPV   Y+ E+  + +    C+ C  C   CP DA
Sbjct: 116 LCNHCDNPPCVKVCPVQATYQREDGIVMVDNKRCVACAYCVQACPYDA 163


>gi|307153522|ref|YP_003888906.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306983750|gb|ADN15631.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 533

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 37 PDECIDCGVCEPECPVDAIKPD 58
          PD C  CG C+P+CP  AI  D
Sbjct: 6  PDNCFGCGTCQPQCPTGAIHVD 27


>gi|118431333|ref|NP_147723.2| putative ATPase RIL [Aeropyrum pernix K1]
 gi|116062656|dbj|BAA80104.2| ABCE1 homolog [Aeropyrum pernix K1]
          Length = 614

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 16 DCVEVCPVDCFYEGENFLA---------IHPDECIDCGVCEPECPVDAI 55
          +C+ VCPV+    G    A         I+ D CI C +C   CP DAI
Sbjct: 25 ECIAVCPVNKSGRGVAIDADMASRGKPVIYEDACIGCALCVKACPFDAI 73


>gi|73541017|ref|YP_295537.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
 gi|72118430|gb|AAZ60693.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
          Length = 417

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     E    +  D C  C  C   CP  AI
Sbjct: 15 EICIRC--NTCEDTCPIDAITHDERNYVVKADVCNACNACLSPCPTGAI 61



 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHD 35


>gi|309776013|ref|ZP_07671005.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916295|gb|EFP62043.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 202

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + + + C+ C    C+  CP  C   G+ ++ +  + C+ CG+C   CPV AI   T
Sbjct: 149 FQILDACVQC--GSCLRSCPQQCIETGQPYIIVQKN-CLHCGLCAEVCPVHAILKRT 202


>gi|257064912|ref|YP_003144584.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792565|gb|ACV23235.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           T  C  C +  CVEVCP    ++      + I+ D+CI CG C   CP D  +
Sbjct: 64  TMACQHCSNPACVEVCPTGASWKDTETGLVLINSDDCIGCGACLNACPYDVRR 116


>gi|226941761|ref|YP_002796835.1| ferredoxin [Laribacter hongkongensis HLHK9]
 gi|226716688|gb|ACO75826.1| Probable ferredoxin [Laribacter hongkongensis HLHK9]
          Length = 813

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELW 66
           D CI+CG CEP CP + +       + LW
Sbjct: 542 DRCIECGFCEPACPSNGLSLTPRQRIVLW 570


>gi|212223165|ref|YP_002306401.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
 gi|212008122|gb|ACJ15504.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
          Length = 638

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 27/59 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV E C  CK    +  CP   +    N + I    C  CGVC   CP DAIK  +E G
Sbjct: 578 VVEEKCTGCKACILLTGCPALVYDPDTNKVKIDELLCTGCGVCNQLCPFDAIKFPSELG 636


>gi|165977109|ref|YP_001652702.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307246598|ref|ZP_07528669.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|165877210|gb|ABY70258.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306852470|gb|EFM84704.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 205

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++  + F+ ++ + CI C  C   CP DA +   
Sbjct: 59  FAYYMSISCNHCDDPACVKVCPTGAMHKNADGFVIVNEETCIGCRYCSMACPYDAPQYSA 118

Query: 60  EPG 62
             G
Sbjct: 119 SKG 121


>gi|89893347|ref|YP_516834.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332795|dbj|BAE82390.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 190

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA--IKPDT 59
           + ++  C  C + +C+ VCP   + +  + + +H PD+C  C  C   CP  A  I P T
Sbjct: 60  FFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVASCPFGAPQINPQT 119


>gi|34556567|ref|NP_906382.1| hypothetical protein WS0117 [Wolinella succinogenes DSM 1740]
 gi|400894|sp|P31076|PSRB_WOLSU RecName: Full=Polysulfide reductase chain B; AltName: Full=Sulfur
           reductase chain B
 gi|48527|emb|CAA46177.1| psrB [Wolinella succinogenes]
 gi|34482281|emb|CAE09282.1| NRFC [Wolinella succinogenes]
          Length = 191

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           ++C+ C++T CV VCP    Y  E+  ++++ D C+ C  C   CP  A
Sbjct: 59  QSCVQCENTPCVSVCPTKASYVNEDGIVSVNVDLCVGCLYCIAACPYQA 107


>gi|301164623|emb|CBW24182.1| putative iron hydrogenase [Bacteroides fragilis 638R]
          Length = 489

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y VT  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 112 VNYEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167


>gi|262042086|ref|ZP_06015262.1| glutamate synthase subunit small chain [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330013592|ref|ZP_08307680.1| putative oxidoreductase Fe-S binding subunit [Klebsiella sp. MS
           92-3]
 gi|259040567|gb|EEW41662.1| glutamate synthase subunit small chain [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328533471|gb|EGF60204.1| putative oxidoreductase Fe-S binding subunit [Klebsiella sp. MS
           92-3]
          Length = 660

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 8   NCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           N I C+H +   CV  CP D   +  + + +  ++CI C  C   CP   ++    P
Sbjct: 52  NAITCRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFGVMQVVVTP 108


>gi|289582897|ref|YP_003481363.1| NADH-quinone oxidoreductase, chain I [Natrialba magadii ATCC
          43099]
 gi|289532450|gb|ADD06801.1| NADH-quinone oxidoreductase, chain I [Natrialba magadii ATCC
          43099]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVMDDKRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|254509402|ref|ZP_05121485.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
 gi|219547676|gb|EED24718.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
          Length = 193

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 105 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 159


>gi|218962108|ref|YP_001741883.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730765|emb|CAO81677.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 374

 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E C  C    CV+ CPV    ++ +    IH ++CI C  C   CP  AI
Sbjct: 313 VSERCKQCG--ICVKSCPVKAISWQNDTKPYIHKEQCIKCLCCHELCPYQAI 362


>gi|163802833|ref|ZP_02196722.1| electron transport complex protein RnfB [Vibrio sp. AND4]
 gi|159173373|gb|EDP58196.1| electron transport complex protein RnfB [Vibrio sp. AND4]
          Length = 197

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVSPCPTDCIE 160


>gi|331648630|ref|ZP_08349718.1| putative electron transport protein YgfS [Escherichia coli M605]
 gi|331042377|gb|EGI14519.1| putative electron transport protein YgfS [Escherichia coli M605]
          Length = 163

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 115

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 116 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIAASGENP 162


>gi|329115318|ref|ZP_08244072.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001]
 gi|326695297|gb|EGE46984.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001]
          Length = 605

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C   +C   CP         G+ + A+  D C  C VC  +CP  AI+ D EP
Sbjct: 529 NCFECD--NCYASCPEQAITRLGPGKGY-AVSMDLCTGCAVCAEQCPCHAIEMDPEP 582


>gi|323498080|ref|ZP_08103085.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
 gi|323316860|gb|EGA69866.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
          Length = 193

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 105 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 159


>gi|170726903|ref|YP_001760929.1| electron transport complex protein RnfB [Shewanella woodyi ATCC
           51908]
 gi|169812250|gb|ACA86834.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|149909449|ref|ZP_01898104.1| oxidoreductase [Moritella sp. PE36]
 gi|149807559|gb|EDM67508.1| oxidoreductase [Moritella sp. PE36]
          Length = 633

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 12  CKHTD---CVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           C H D   C++ CP   + +   + A+   PD C  CG C   CP +A  P  +P
Sbjct: 145 CNHCDDPVCLKGCPTKAYTKHVEYGAVLQDPDTCFGCGYCTWVCPYNA--PQLDP 197


>gi|37680406|ref|NP_935015.1| tetrathionate reductase, subunit B [Vibrio vulnificus YJ016]
 gi|37199153|dbj|BAC94986.1| tetrathionate reductase, subunit B [Vibrio vulnificus YJ016]
          Length = 255

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATYQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|327399634|ref|YP_004340503.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Hippea maritima DSM 10411]
 gi|327182263|gb|AEA34444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Hippea maritima DSM 10411]
          Length = 146

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C+H D   C+E C     +  E  ++ ++PD C+ C +C   CP   IK DT    E 
Sbjct: 57  VMCRHCDDAPCMEACQNGSMHRDERGYVVVNPDTCVGCWMCVMACPYGVIKTDTR--REA 114

Query: 66  W 66
           W
Sbjct: 115 W 115


>gi|323492347|ref|ZP_08097500.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
 gi|323313394|gb|EGA66505.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
          Length = 194

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|212223691|ref|YP_002306927.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
 gi|212008648|gb|ACJ16030.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
          Length = 168

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
          NC  C+   C++VCP    Y + +  + I+PD+CI C +C   CP
Sbjct: 47 NCRHCERAPCMDVCPAGAIYRDSDGAIIINPDKCIGCYMCLAVCP 91


>gi|148653804|ref|YP_001280897.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Psychrobacter sp. PRwf-1]
 gi|148572888|gb|ABQ94947.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Psychrobacter sp. PRwf-1]
          Length = 83

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C  VCP D  YEGE    I+PD C +C        C   CP+D 
Sbjct: 1  MALMITDECINCDV--CEPVCPNDAIYEGEEIYEINPDLCTECVGHFDEPQCVEICPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPND 62


>gi|15789837|ref|NP_279661.1| NADH dehydrogenase/oxidoreductase-like protein [Halobacterium sp.
          NRC-1]
 gi|169235558|ref|YP_001688758.1| NADH dehydrogenase-like complex subunit I [Halobacterium
          salinarum R1]
 gi|10580231|gb|AAG19141.1| NADH dehydrogenase/oxidoreductase-like protein [Halobacterium sp.
          NRC-1]
 gi|167726624|emb|CAP13409.1| NADH dehydrogenase-like complex subunit I [Halobacterium
          salinarum R1]
          Length = 153

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVTDNQRNGEQY-NLHVGQCIYCRLCEEVCPVDAI 97


>gi|148263632|ref|YP_001230338.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146397132|gb|ABQ25765.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 431

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 17  CVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CV  CPV         D          I  + C+ CGVC   CPV AI+ ++ P
Sbjct: 298 CVAACPVAVAELITANDPLNPARKKARIDRENCLGCGVCVRSCPVAAIRLESRP 351


>gi|150388818|ref|YP_001318867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149948680|gb|ABR47208.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 226

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   CV  CPV+    Y+ +N + +H +E CI C  CE  CP   I  + E     
Sbjct: 58  CNHCEDAPCVTACPVNPKAMYKQDNGITMHDEETCIGCRACETACPYGVIYYNDEEPFGK 117

Query: 66  W 66
           W
Sbjct: 118 W 118


>gi|330830052|ref|YP_004393004.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565]
 gi|328805188|gb|AEB50387.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKSEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|295100394|emb|CBK97939.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 517

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  ++CI CG C   CP +AI     P
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQEKCIKCGRCVGVCPYNAIVKTERP 177


>gi|256810428|ref|YP_003127797.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
 gi|256793628|gb|ACV24297.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
          Length = 247

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C LC    C++ CP     + + F+ I   +C+ CG C+  CP +AI    E  + +  K
Sbjct: 159 CKLC--LKCIDACPNGAIIKRDGFVEISIHKCLGCGNCKKICPYNAIVEGKEIKMRVR-K 215

Query: 69  INSEYATQWPNI 80
           I++E   +   +
Sbjct: 216 IDAENTRRLKEL 227


>gi|269793046|ref|YP_003317950.1| glycyl-radical enzyme activating protein family
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100681|gb|ACZ19668.1| glycyl-radical enzyme activating protein family
          [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 301

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CP      GE+ L +    C+ CG+C   CP DA++
Sbjct: 53 ERCVGCGR--CALACPAGAISYGEH-LRLDRSRCVRCGMCAQACPADAMR 99


>gi|269797247|ref|YP_003311147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
 gi|269093876|gb|ACZ23867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
          Length = 70

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG+    I    CI CG C   CPV A+K
Sbjct: 4  LKFNIDDTCVKCGA--CAEDCPVQCITEGKTRFIIGKG-CIGCGDCYSICPVGAVK 56


>gi|224437244|ref|ZP_03658221.1| ferredoxin [Helicobacter cinaedi CCUG 18818]
 gi|313143705|ref|ZP_07805898.1| ferredoxin [Helicobacter cinaedi CCUG 18818]
 gi|313128736|gb|EFR46353.1| ferredoxin [Helicobacter cinaedi CCUG 18818]
          Length = 83

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++   CI C    C E CP     EG+   +I PD C +C        C   CPVDA
Sbjct: 1  MALMINNECIACDA--CAEECPNGAIEEGDPIYSIDPDVCTECVGSYDEPSCLSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IVPD 62


>gi|89053933|ref|YP_509384.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88863482|gb|ABD54359.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 254

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D + G+
Sbjct: 86  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGARELDQDEGV 144


>gi|330864198|emb|CBX74259.1| electron transport complex protein rnfB [Yersinia enterocolitica
          W22703]
          Length = 126

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
          + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 28 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 82


>gi|327309969|ref|YP_004336866.1| sulfur reductase subunit B [Thermoproteus uzoniensis 768-20]
 gi|326946448|gb|AEA11554.1| sulfur reductase, subunit B [Thermoproteus uzoniensis 768-20]
          Length = 266

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  C++  C  VCP    ++   +  + I+ D CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFHCRNPACTTVCPTGAIFKRKEDGVVVINYDVCIGCRYCENACPYGNITFDP 129

Query: 60  EPGL--ELWLKINSEYATQWP---NITTKKESLPSAAKMDG 95
             G+  +  L I+  Y    P    I     + P+ A++ G
Sbjct: 130 VEGVSKKCTLAIDRIYDESLPEYERIPPCVRNCPAGARIFG 170


>gi|317491979|ref|ZP_07950412.1| glutamate synthase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920004|gb|EFV41330.1| glutamate synthase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 687

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +LC+H +   C  VCP     + ++ + +  ++CI C  C   CP  A++  T P 
Sbjct: 54  VLCRHCEDAPCANVCPNHAIEKRDDSIQVIQEKCIGCKTCVVACPFGAMEVITHPA 109


>gi|309389497|gb|ADO77377.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 329

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C  + C +VCPVD     +N   I  ++C++CG C  +CP   I+
Sbjct: 217 GCIAC--SLCAKVCPVDAIEIKDNLAVIDYEKCVNCGKCAEKCPTGTIQ 263



 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 16  DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           DC  VCP D  Y  EN L  I P++C  CG C  ECP
Sbjct: 148 DCESVCPFDAIYMSENGLPQIDPEKCTACGKCITECP 184



 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           + +NC+ C  T C   CPV+   EGE  N   I  D+CI CG+C   C V A+
Sbjct: 274 INDNCVGC--TLCARACPVEAI-EGEVKNRHQIDQDKCIQCGLCFEACNVKAV 323


>gi|262369340|ref|ZP_06062668.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii
           SH046]
 gi|262315408|gb|EEY96447.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii
           SH046]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  ++  +KE+L
Sbjct: 116 MTPDFELG---------EYVRQ--DLVYEKENL 137


>gi|284174515|ref|ZP_06388484.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus 98/2]
 gi|261601935|gb|ACX91538.1| NADH-quinone oxidoreductase, chain I [Sulfolobus solfataricus 98/2]
          Length = 167

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K
Sbjct: 54  MIRLYKDVCIGC--TLCALICPADAMKMVTESGKKFPQINYGRCVFCGFCVDVCPVDALK 111


>gi|258404574|ref|YP_003197316.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM
          5692]
 gi|257796801|gb|ACV67738.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM
          5692]
          Length = 285

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          FY GE   AI P +C +CGVC   C   AI  D E  LE
Sbjct: 55 FYSGE-LPAIDPQKCTECGVCASSCRFGAISEDIEIRLE 92


>gi|51595156|ref|YP_069347.1| anaerobic dimethyl sulfoxide reductase, subunit B [Yersinia
           pseudotuberculosis IP 32953]
 gi|51588438|emb|CAH20046.1| anaerobic dimethyl sulfoxide reductase, subunit B [Yersinia
           pseudotuberculosis IP 32953]
          Length = 205

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C    C +VCP    ++  + F+ ++ D CI C  C   CP  A + D 
Sbjct: 59  FAYYLSIACNHCSDPACTKVCPSGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|261253562|ref|ZP_05946135.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
 gi|260936953|gb|EEX92942.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
          Length = 194

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|251791771|ref|YP_003006492.1| putative oxidoreductase Fe-S binding subunit [Dickeya zeae Ech1591]
 gi|247540392|gb|ACT09013.1| glutamate synthase, small subunit [Dickeya zeae Ech1591]
          Length = 667

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+ + C  VCP       ++ + +  ++CI C  C   CP  AI  + +
Sbjct: 56  CRHCEDSPCANVCPTQALVRKQDGIQLVAEKCIGCKTCVLACPFGAITVENQ 107


>gi|157148258|ref|YP_001455577.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter
           koseri ATCC BAA-895]
 gi|157085463|gb|ABV15141.1| hypothetical protein CKO_04075 [Citrobacter koseri ATCC BAA-895]
          Length = 180

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 7   ENCILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +      C   GE     +   CI C  CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETCLVTGELAWQFNLGRCIFCARCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLKIN 70
             L +W K +
Sbjct: 96  YELAVWKKAD 105


>gi|281356043|ref|ZP_06242536.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
 gi|281317412|gb|EFB01433.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
          Length = 572

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSEYA 74
           C+  CP       +    +  D C+ CG+C   CP  A  I+PD      L       YA
Sbjct: 20  CIRHCPCKAIRIVDGRAGVIQDLCVACGMCVKVCPAHAKKIRPDLARARMLLGSGKRVYA 79

Query: 75  TQWPNITTKKESLPSAAKMDGVKQ 98
           +  P+  +  ++LP  A    +K+
Sbjct: 80  SLAPSFVSYFKNLPPGALAAAIKK 103


>gi|45359066|ref|NP_988623.1| pyruvate oxidoreductase-associated [Methanococcus maripaludis S2]
 gi|45047941|emb|CAF31059.1| conserved archaeal protein, pyruvate oxidoreductase-associated
          [Methanococcus maripaludis S2]
          Length = 167

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C+H   + C+EVCPV      +  + +  + CI CG+C   CP  AI
Sbjct: 42 VVCQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAI 90


>gi|186681639|ref|YP_001864835.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nostoc punctiforme PCC 73102]
 gi|186464091|gb|ACC79892.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc
          punctiforme PCC 73102]
          Length = 74

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPVD-AI 55
          +VTE C      DCV+ CPV C ++G        ++  I    CIDCG+C   CPV+ AI
Sbjct: 5  IVTEVCE--GVADCVDACPVACIHDGPGKNAKGTDWYWIDFATCIDCGICLQVCPVEGAI 62

Query: 56 KPDTEPGLE 64
            +  P L+
Sbjct: 63 LAEERPELQ 71


>gi|330448648|ref|ZP_08312296.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492839|dbj|GAA06793.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 186

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++C+H +   C  VCPV    +  + + ++   C+ C +C   CP  AI  D    + + 
Sbjct: 31  VMCRHCEDAPCAAVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFDGSRPIAMA 90

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMD 94
              ++ Y    P  +    S+PS    D
Sbjct: 91  NSYDT-YIPSTPRSSNPSTSIPSTFGQD 117


>gi|292655142|ref|YP_003535039.1| NADH dehydrogenase-like complex subunit I [Haloferax volcanii
          DS2]
 gi|291370688|gb|ADE02915.1| NADH dehydrogenase-like complex subunit I [Haloferax volcanii
          DS2]
          Length = 153

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVQDDQRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|269119596|ref|YP_003307773.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268613474|gb|ACZ07842.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 438

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 12/55 (21%)

Query: 7   ENCILCKHTDCVEVCPV-------DCFYEG---ENFLAIHPDECIDCGVCEPECP 51
           +NCILC +  C EVCPV       + FY     +  L  + + CI+CG CE  CP
Sbjct: 362 KNCILCGY--CSEVCPVYLMPMKFEEFYRKGKYKKLLEFNLNSCIECGACEYICP 414


>gi|90407583|ref|ZP_01215764.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
           [Psychromonas sp. CNPT3]
 gi|90311286|gb|EAS39390.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
           [Psychromonas sp. CNPT3]
          Length = 205

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +LC+H +   C  VCPV+        + I+   CI C +C   CP  AI      G+ L
Sbjct: 49  VLCRHCEDAPCATVCPVNAITHVNGSIHINESLCIGCTLCSIACPFGAITFSGSRGVGL 107


>gi|114563171|ref|YP_750684.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334464|gb|ABI71846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 190

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           +C  C+   CV VCP    Y  EN  ++IH D+C+ C  C   CP
Sbjct: 59  SCQQCEDAPCVSVCPTGAAYIDENGLVSIHNDKCVGCMYCVAACP 103


>gi|328952548|ref|YP_004369882.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452872|gb|AEB08701.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1503

 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 7    ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
            E C++C    C   CP       E+ F+ I P EC  CG C   CP
Sbjct: 1424 EKCVVC--MTCARTCPFGAPKVAEDGFIDIDPAECHGCGNCASACP 1467


>gi|289191965|ref|YP_003457906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938415|gb|ADC69170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 164

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          I+C+H     C EVCPV      + ++ ++ + CI CG+C   CP  AI
Sbjct: 42 IICQHCASAPCKEVCPVSAIEHKDGYVYLNEEICIGCGLCALACPFGAI 90


>gi|222479143|ref|YP_002565380.1| NADH-quinone oxidoreductase, chain I [Halorubrum lacusprofundi
          ATCC 49239]
 gi|222452045|gb|ACM56310.1| NADH-quinone oxidoreductase, chain I [Halorubrum lacusprofundi
          ATCC 49239]
          Length = 153

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVQDDQRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|90578228|ref|ZP_01234039.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
 gi|90441314|gb|EAS66494.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
          Length = 204

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++C+H +   C  VCPV    +  + + ++   C+ C +C   CP  AI  D    + + 
Sbjct: 49  VMCRHCEDAPCAAVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFDGSRPIAMA 108

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMD 94
              ++ Y    P  +    S+PS    D
Sbjct: 109 NSYDT-YIPSTPRSSNPSTSIPSTFGQD 135


>gi|15899490|ref|NP_344095.1| ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus P2]
 gi|284174261|ref|ZP_06388230.1| ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus
          98/2]
 gi|13816112|gb|AAK42885.1| Ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus P2]
 gi|261601262|gb|ACX90865.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          solfataricus 98/2]
          Length = 89

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIVVHYERCLECGAALVACPYGAIK 76


>gi|289191766|ref|YP_003457707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938216|gb|ADC68971.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 260

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CVE CP++   +  + + I+ D+CI CG C   CP +AIK
Sbjct: 215 CVEECPINAIEQEGDKVKINKDKCILCGRCADVCPANAIK 254


>gi|254162798|ref|YP_003045906.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli B str. REL606]
 gi|253974699|gb|ACT40370.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli B str. REL606]
 gi|253978865|gb|ACT44535.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BL21(DE3)]
          Length = 110

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 3   CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 62

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 63  VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 109


>gi|258405501|ref|YP_003198243.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797728|gb|ACV68665.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
          Length = 793

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 8   NCILCKHTD-CVEVCPVDCF----YEGENF-LAIHPDECIDCGVCEPECP 51
           +C  C+    C+E+CP          GE+F +   P++CI CG C   CP
Sbjct: 731 SCGACRDCGLCIEICPQTAINRRQLSGEDFEMVADPEKCIGCGFCAQACP 780


>gi|145592049|ref|YP_001154051.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145283817|gb|ABP51399.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum arsenaticum DSM 13514]
          Length = 604

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           I P  C+ CG+C   CPVDAIK D      LE+W
Sbjct: 568 IDPALCVGCGMCAEVCPVDAIKGDGARVKWLEVW 601


>gi|220931135|ref|YP_002508043.1| Ferredoxin hydrogenase [Halothermothrix orenii H 168]
 gi|219992445|gb|ACL69048.1| Ferredoxin hydrogenase [Halothermothrix orenii H 168]
          Length = 456

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 4   VVTEN---CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VVT N   C LC+     + C V C    +  L I    CI CG C P+CP++A+    E
Sbjct: 87  VVTVNRKICDLCQKKYGPDYCRVGCDINEKEGLLIEDGRCISCGKCIPKCPLEAVSDKVE 146

Query: 61  PG-LELWLKINSE-YATQWPNI 80
              L  +LK +++ YA   P I
Sbjct: 147 FFPLYKYLKNDTQVYANVAPAI 168


>gi|332981009|ref|YP_004462450.1| dihydroorotate oxidase [Mahella australiensis 50-1 BON]
 gi|332698687|gb|AEE95628.1| dihydroorotate oxidase [Mahella australiensis 50-1 BON]
          Length = 385

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           D+C  CG+C P C  DAI   TEP
Sbjct: 334 DKCTSCGICAPLCIFDAIDSSTEP 357


>gi|331270189|ref|YP_004396681.1| anaerobic sulfite reductase subunit C [Clostridium botulinum
           BKT015925]
 gi|329126739|gb|AEB76684.1| anaerobic sulfite reductase subunit C [Clostridium botulinum
           BKT015925]
          Length = 304

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C     +E C +   Y+ E+ +AI  ++CI+CG C   C   A++   E G++++
Sbjct: 170 EKCKNCGKCAVIEKCRMKAVYKVEDRVAIDREKCINCGKCIENCYFSAMEV-KEEGMKIY 228

Query: 67  L 67
           L
Sbjct: 229 L 229


>gi|90578562|ref|ZP_01234372.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
 gi|90439395|gb|EAS64576.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
          Length = 551

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +    L I  D C+ CG+CE  CP   I
Sbjct: 416 TTDCTLC--MSCVAVCPTRALHAIGDRPGLLFIEED-CVQCGMCEKACPEKVI 465


>gi|83952617|ref|ZP_00961347.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83835752|gb|EAP75051.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 264

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 86  KSCLHCEDAPCVTVCPTGASYKRTEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGV 144


>gi|332534029|ref|ZP_08409878.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036466|gb|EGI72934.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 184

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|320540447|ref|ZP_08040097.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia
           symbiotica str. Tucson]
 gi|320029378|gb|EFW11407.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia
           symbiotica str. Tucson]
          Length = 176

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVSCISLQKAEQQDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFEMG 123


>gi|315651792|ref|ZP_07904796.1| iron-sulfur cluster-binding protein [Eubacterium saburreum DSM
           3986]
 gi|315485922|gb|EFU76300.1| iron-sulfur cluster-binding protein [Eubacterium saburreum DSM
           3986]
          Length = 317

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-----PDECIDCGVCEPECPVD 53
           VV    I      C  +CP+   Y   N +  +     PD+C++CG+CE  C +D
Sbjct: 201 VVVALSIFTYRPFCKYICPLGAMYSFFNKIGFYKMEFVPDKCVNCGLCEKSCKMD 255


>gi|260779356|ref|ZP_05888248.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605520|gb|EEX31815.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 194

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|256829731|ref|YP_003158459.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578907|gb|ACU90043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 293

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           DCV  CP D  +   + + I PD+C  CG C   CP
Sbjct: 145 DCVRACPFDAMWIENDLVHIAPDKCTSCGTCVRTCP 180


>gi|218780441|ref|YP_002431759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761825|gb|ACL04291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 301

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            AI+ DECI CG CE  CPVD I    +P
Sbjct: 195 FAINQDECIQCGQCEDLCPVDGIDISADP 223


>gi|170289699|ref|YP_001736515.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173779|gb|ACB06832.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 649

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + C  C+       CP   F +  + + I P  C  CG C   CP DAI+P
Sbjct: 584 VNKDKCTYCRVCINTFACPA--FVDTGSSVEIDPAICFGCGACVQVCPYDAIEP 635


>gi|83309275|ref|YP_419539.1| ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
 gi|82944116|dbj|BAE48980.1| Ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
          Length = 393

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 9  CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CPVD   ++G N++  + D+C  C  C   CP  AI
Sbjct: 14 CIRC--NTCEEACPVDAITHDGTNYVVSY-DKCTGCRTCVSPCPTGAI 58


>gi|76666825|emb|CAJ31202.1| Adenosine-5-phosphosulfate reductase subunit B (AprB) [uncultured
           sulfate-reducing bacterium]
          Length = 152

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 18/125 (14%)

Query: 2   TYVVTENCILCKHTD---CVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
           +YV+ E C  CK  D   C  VCP D     E  +      PD C +C  C   CPV AI
Sbjct: 3   SYVIAEKCDGCKALDKTACQYVCPNDLMVLDEGQMKAFNQEPDMCWECYCCVKICPVQAI 62

Query: 56  K----PDTEPGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           +     D  P   L   + +  +  W     N   K+   P     +G  Q ++++    
Sbjct: 63  EVRGYADFVPMGALVTPLRATDSIMWTLKFRNGMLKRFKFPIRTTEEGKAQPFDQF---- 118

Query: 108 PGGKN 112
           P G N
Sbjct: 119 PTGDN 123


>gi|85708744|ref|ZP_01039810.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
 gi|85690278|gb|EAQ30281.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
          Length = 162

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 118

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        N EYAT+     T++E L   AK+     K+E+  + N
Sbjct: 119 EGP----------NFEYATE-----TREELLYDKAKLLANGDKWERAIAAN 154


>gi|219666619|ref|YP_002457054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536879|gb|ACL18618.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 185

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA--IKPDT 59
           + ++  C  C + +C+ VCP   + +  + + +H PD+C  C  C   CP  A  I P T
Sbjct: 55  FFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVASCPFGAPQINPQT 114


>gi|313201532|ref|YP_004040190.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. MP688]
 gi|312440848|gb|ADQ84954.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. MP688]
          Length = 280

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 93  VAFIDEQTCIGC--TLCIQACPVDAILGASKQMHTVIADECTGCELCIAPCPVDCI 146


>gi|303244235|ref|ZP_07330572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485362|gb|EFL48289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 170

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++C+H     C EVCPV+     +  + +   +CI CG+C   CP  AI   TE   +  
Sbjct: 42  VVCQHCASAPCKEVCPVEAIENKDGVIYLDESKCIGCGLCAMACPFGAITM-TEVAHKCS 100

Query: 67  LKINSE 72
           L I SE
Sbjct: 101 LCIESE 106


>gi|297618262|ref|YP_003703421.1| electron transfer flavoprotein alpha/beta-subunit
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297146099|gb|ADI02856.1| Electron transfer flavoprotein alpha/beta-subunit
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 394

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLE- 64
          CI C    CVE CP        N + +  D C  CG C  +CPV AI   +P+T+  +  
Sbjct: 9  CIGCG--ICVETCPFGSITLVNN-VPVVSDTCTLCGSCAHDCPVGAIVITRPETKAKVAS 65

Query: 65 ------LWLKINSEYATQ 76
                +WL+I+     Q
Sbjct: 66 EAEDVWVWLEISDNQIKQ 83


>gi|322417691|ref|YP_004196914.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18]
 gi|320124078|gb|ADW11638.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18]
          Length = 176

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 12/65 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGEN      +  I+   CI CG+C   CP  AI
Sbjct: 54  AERCVACYL--CSGACPVDCISMAAAEGENGRRYAVWFRINFSRCILCGLCAEACPTLAI 111

Query: 56  KPDTE 60
           +  +E
Sbjct: 112 QMSSE 116


>gi|237798781|ref|ZP_04587242.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021634|gb|EGI01691.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 291

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  +EC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIIEECTGCDLCVAPCPVDCIE 137


>gi|157164645|ref|YP_001466166.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Campylobacter concisus 13826]
 gi|112800391|gb|EAT97735.1| electron transport protein HydN [Campylobacter concisus 13826]
          Length = 189

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFNDNCIELHEEICIGCKMCTIACPYGAISSSAE 104


>gi|73540750|ref|YP_295270.1| ferredoxin [Ralstonia eutropha JMP134]
 gi|72118163|gb|AAZ60426.1| Electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           eutropha JMP134]
          Length = 248

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD      +    I P+ C  C +C P CPVD I
Sbjct: 87  CIGC--TLCIQACPVDAIAGAAKQMHTIIPELCTGCDLCVPPCPVDCI 132


>gi|71900626|ref|ZP_00682752.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|71729620|gb|EAO31725.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
          Length = 139

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + +++  +CI C  T C++ CPVD    G   +  +    C  C +C P CPV+ I+
Sbjct: 81  VAWIIEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVECIE 135


>gi|22124776|ref|NP_668199.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis KIM
           10]
 gi|45440219|ref|NP_991758.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808811|ref|YP_652727.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Antiqua]
 gi|108810934|ref|YP_646701.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|145600291|ref|YP_001164367.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides F]
 gi|153947293|ref|YP_001402217.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997629|ref|ZP_02022729.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CA88-4125]
 gi|162418201|ref|YP_001605488.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Angola]
 gi|165925705|ref|ZP_02221537.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936633|ref|ZP_02225200.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010127|ref|ZP_02231025.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213010|ref|ZP_02239045.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399468|ref|ZP_02304992.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421626|ref|ZP_02313379.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423573|ref|ZP_02315326.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467625|ref|ZP_02332329.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           FV-1]
 gi|170025608|ref|YP_001722113.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           YPIII]
 gi|186894170|ref|YP_001871282.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930345|ref|YP_002348220.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CO92]
 gi|229838947|ref|ZP_04459106.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896427|ref|ZP_04511595.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides A]
 gi|229899514|ref|ZP_04514655.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901149|ref|ZP_04516272.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|270489331|ref|ZP_06206405.1| dimethylsulfoxide reductase, chain B [Yersinia pestis KIM D27]
 gi|294505035|ref|YP_003569097.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Z176003]
 gi|5002127|gb|AAD37318.1|AF135170_9 dimethyl sulfoxide reductase subunit B [Yersinia pestis]
 gi|21957598|gb|AAM84450.1|AE013689_5 anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45435075|gb|AAS60635.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774582|gb|ABG17101.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|108780724|gb|ABG14782.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Antiqua]
 gi|115348956|emb|CAL21915.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CO92]
 gi|145211987|gb|ABP41394.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides F]
 gi|149289266|gb|EDM39346.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CA88-4125]
 gi|152958788|gb|ABS46249.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351016|gb|ABX84964.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           Angola]
 gi|165915282|gb|EDR33892.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922317|gb|EDR39494.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991034|gb|EDR43335.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205797|gb|EDR50277.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960545|gb|EDR56566.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051972|gb|EDR63380.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057743|gb|EDR67489.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752142|gb|ACA69660.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           YPIII]
 gi|186697196|gb|ACC87825.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681874|gb|EEO77967.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|229687006|gb|EEO79081.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695313|gb|EEO85360.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700501|gb|EEO88532.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides A]
 gi|262363098|gb|ACY59819.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           D106004]
 gi|262367026|gb|ACY63583.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           D182038]
 gi|270337835|gb|EFA48612.1| dimethylsulfoxide reductase, chain B [Yersinia pestis KIM D27]
 gi|294355494|gb|ADE65835.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Z176003]
 gi|320016518|gb|ADW00090.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 205

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D 
Sbjct: 59  FAYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|317492597|ref|ZP_07951024.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919347|gb|EFV40679.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 326

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +H  PD C  C  C   CP D  K D
Sbjct: 108 IKKQCMHCVDANCVSVCPVQALRKDPKTGIVHYDPDVCTGCRYCMVGCPFDVPKYD 163


>gi|308273606|emb|CBX30208.1| hypothetical protein N47_D30170 [uncultured Desulfobacterium sp.]
          Length = 341

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 15/59 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y   +NCILC   DC+ VC        DC       + I+ D C  CG+C  +CP  A+
Sbjct: 72  YHQPQNCILC--ADCLSVCQQGAITINDC-------VRINRDLCDGCGLCAGQCPAKAM 121


>gi|304315374|ref|YP_003850521.1| energy-converting hydrogenase B, subunit K [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588833|gb|ADL59208.1| energy-converting hydrogenase B, subunit K [Methanothermobacter
           marburgensis str. Marburg]
          Length = 447

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E+CI C    C E+CPVD        + +  D+CI C  C   CP DAI
Sbjct: 322 VSEDCISCGV--CSEICPVDAITLKRGSIEVDTDKCILCEKCGIHCPADAI 370



 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 17  CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+E+CP D   + E+  + +  D+CI CG C   CP  A+  + E GL
Sbjct: 398 CLEICPEDAISKDESGLMMVDEDKCIHCGACSNICPARAVLFEREFGL 445


>gi|258404218|ref|YP_003196960.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796445|gb|ACV67382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 144

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGLE 64
            + C+ C    C E CP     + +    ++    CI CG C   CPVDAI  D E    
Sbjct: 51  AQVCLACDPAPCAEACPTGAMRQRKGGGVVYTKSLCIQCGDCARACPVDAIYMDPETNAP 110

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMD 94
           +            P+   +  ++PSA+K D
Sbjct: 111 VVCIHCGRCVEFCPHDCLEMVTVPSASKED 140


>gi|227824723|ref|ZP_03989555.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905222|gb|EEH91140.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 411

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELWLKINSE-Y 73
           C +VC  D  + G++ ++I  D+C+ C  C   C +DA+  K D  P +E   K  +  Y
Sbjct: 60  CAQVCHWDALHPGKDGISIDNDKCVGCQACVDACKLDALKTKKDIIPVVEELKKAETPIY 119

Query: 74  ATQWPNITTKKESLPSAAKM 93
           A   P  + +  S  +A ++
Sbjct: 120 ALVAPAFSGQFGSKVTAGRL 139


>gi|189460038|ref|ZP_03008823.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
 gi|189433199|gb|EDV02184.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
          Length = 321

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P +C  C  CE ECP +AI
Sbjct: 218 TAACIGCGK--CVKVCPFEAITLENNLAYIDPAKCKSCRKCETECPQNAI 265


>gi|150018616|ref|YP_001310870.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905081|gb|ABR35914.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 184

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V   C  C++  C +VCP++     +N + I  + CI C  C   CP  AI+  T+
Sbjct: 54  FTVPVQCRHCENAPCAKVCPINAIKNEDNAIIIDEEICIGCKACAVACPFGAIEMGTK 111


>gi|262375913|ref|ZP_06069144.1| electron transport complex protein [Acinetobacter lwoffii SH145]
 gi|262309007|gb|EEY90139.1| electron transport complex protein [Acinetobacter lwoffii SH145]
          Length = 263

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  V+ E+ CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 83  IKAVIREDECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137


>gi|238756491|ref|ZP_04617796.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
 gi|238705278|gb|EEP97690.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
          Length = 207

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 109 VAFIDESNCIGC--TKCIQACPVDAIIGATRAMHTVLPDLCTGCDLCVDPCPTDCIE 163


>gi|119720719|ref|YP_921214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525839|gb|ABL79211.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 131

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C  VCP +     E   + ++P +C+ CG C   CP+ A++ D E
Sbjct: 53  CRACENPPCAAVCPTNALVRREGGGVVLNPSKCVGCGNCARACPIGAVQWDYE 105


>gi|5734562|emb|CAB52788.1| polyferredoxin [Methanothermobacter thermautotrophicus]
          Length = 447

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E+CI C    C E+CPVD        + +  D+CI C  C   CP DAI
Sbjct: 322 VSEDCISCGV--CSEICPVDAITLKRGSIEVDTDKCILCEKCGIHCPADAI 370



 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 17  CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+E+CP D   + E+  + +  D+CI CG C   CP  A+  + E GL
Sbjct: 398 CLEICPEDAISKDESGLMMVDEDKCIHCGACSNICPARAVLFEREFGL 445


>gi|15803422|ref|NP_289455.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          EDL933]
 gi|15833012|ref|NP_311785.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|217327883|ref|ZP_03443966.1| 4Fe-4S binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794837|ref|YP_003079674.1| putative oxidoreductase [Escherichia coli O157:H7 str. TW14359]
 gi|12517409|gb|AAG58014.1|AE005518_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. EDL933]
 gi|13363230|dbj|BAB37181.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7
          str. Sakai]
 gi|209760648|gb|ACI78636.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760650|gb|ACI78637.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760652|gb|ACI78638.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760654|gb|ACI78639.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760656|gb|ACI78640.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|217320250|gb|EEC28675.1| 4Fe-4S binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254594237|gb|ACT73598.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|320189228|gb|EFW63887.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|326339031|gb|EGD62846.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. 1044]
 gi|326343086|gb|EGD66854.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. 1125]
          Length = 131

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 24 CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 77


>gi|308051341|ref|YP_003914907.1| thiosulfate reductase subunit beta [Ferrimonas balearica DSM 9799]
 gi|307633531|gb|ADN77833.1| thiosulfate reductase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C++  CV VCP    Y GE+  ++I  D+C+ C  C   CP  V  I P+T 
Sbjct: 59  SCEQCENAPCVHVCPTGAAYVGEDGIVSIKEDKCVGCLYCVAACPYKVRFINPETR 114


>gi|299483498|gb|ADJ19579.1| putative Fe-S PAS/PAC sensor protein [Treponema primitia ZAS-2]
          Length = 583

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP---------VDAIKPDTEPGLELWL 67
          C+  CPV      +    I P  CI CG C   CP         VD +K     G++++ 
Sbjct: 19 CISRCPVKSIQVKDGHAEIIPKICIYCGNCVISCPARAKRVRNDVDQVKKLISRGVKVYA 78

Query: 68 KINSEYATQWPNITTKK 84
           I   YA+++  +   K
Sbjct: 79 SIAPAYASEFHGLPQAK 95


>gi|262280053|ref|ZP_06057838.1| conserved hypothetical protein [Acinetobacter calcoaceticus
          RUH2202]
 gi|262260404|gb|EEY79137.1| conserved hypothetical protein [Acinetobacter calcoaceticus
          RUH2202]
          Length = 87

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCD--VCEPVCPNEAIFMGEVIYEIHPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPDTE 60
          I  D E
Sbjct: 59 IPKDPE 64


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           +TY + E+ C+ C    C++ CPV     GE   A  I   +C+ CG C P+C  DAI
Sbjct: 560 LTYAIVEDKCVGCGV--CIKACPVGAI-TGEKKAAHTIDASKCVKCGACVPKCKFDAI 614


>gi|300711696|ref|YP_003737510.1| NADH-quinone oxidoreductase, chain I [Halalkalicoccus jeotgali
          B3]
 gi|299125379|gb|ADJ15718.1| NADH-quinone oxidoreductase, chain I [Halalkalicoccus jeotgali
          B3]
          Length = 153

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVQDEQRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|269125638|ref|YP_003299008.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermomonospora curvata DSM 43183]
 gi|268310596|gb|ACY96970.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermomonospora curvata DSM 43183]
          Length = 118

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          V+   CI C    CV+VCP+D F    G   +     +C  C +CE  CP DA+  D + 
Sbjct: 5  VIASRCIQCDK--CVQVCPMDVFDAVPGGVPVIARQSDCQTCFMCELYCPADALYVDPDC 62

Query: 62 GLELWLKINSEYATQWPNITTKKESLPSAAK 92
             + +      AT WP    +      A +
Sbjct: 63 HGPVPVDEARILATDWPEQYRRDSGWGRARR 93


>gi|89894372|ref|YP_517859.1| hypothetical protein DSY1626 [Desulfitobacterium hafniense Y51]
 gi|219668798|ref|YP_002459233.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89333820|dbj|BAE83415.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539058|gb|ACL20797.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 92

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E C+ CK   C  +CP   +   E EN +A+  + C++CG C   CP   I+ D   G
Sbjct: 26 ELCLKCKDKVCTFICPAHVYDWDEEENRIAVGYEGCLECGTCRVACPHGNIQWDYPRG 83


>gi|262280139|ref|ZP_06057924.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260490|gb|EEY79223.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus
           RUH2202]
          Length = 180

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  ++  +KE+L
Sbjct: 116 MTPDFELG---------EYVRQ--DLVYEKENL 137


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +TY +T+ CI C  T C  VCP+D      ++   I+ + CI CG C   C   AI
Sbjct: 538 ITYSITDKCIGC--TACARVCPIDAITGTVKHRHEINNEICIKCGACYETCKFGAI 591


>gi|189218491|ref|YP_001939132.1| Ferredoxin-like protein [Methylacidiphilum infernorum V4]
 gi|189185349|gb|ACD82534.1| Ferredoxin-like protein [Methylacidiphilum infernorum V4]
          Length = 99

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPEC 50
          C LC    C  +CP  C+  GE N +++  D C++CG C+  C
Sbjct: 35 CSLCHDKSCTVLCPAGCYQRGEGNTVSLVTDGCLECGTCQVIC 77


>gi|209542887|ref|YP_002275116.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530564|gb|ACI50501.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 170

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 20/90 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        +G    ++  I+   CI CG CE  CP  AI+ 
Sbjct: 49  ERCVACGL--CAVACPVDCISLQKTEQDGRWYPDYFRINFSRCIFCGFCEEACPTYAIQ- 105

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESL 87
              P  E+     SEY    P++  +KE L
Sbjct: 106 -LTPDFEM-----SEYVR--PSLVYEKEDL 127


>gi|184200425|ref|YP_001854632.1| putative formate dehydrogenase iron-sulfur subunit [Kocuria
           rhizophila DC2201]
 gi|183580655|dbj|BAG29126.1| putative formate dehydrogenase iron-sulfur protein [Kocuria
           rhizophila DC2201]
          Length = 404

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 204 CKHCTHAGCLDVCPTGALFRTEYGTVVVQEDICNGCGTCVAGCPFGVIE 252


>gi|167772620|ref|ZP_02444673.1| hypothetical protein ANACOL_04001 [Anaerotruncus colihominis DSM
           17241]
 gi|167665098|gb|EDS09228.1| hypothetical protein ANACOL_04001 [Anaerotruncus colihominis DSM
           17241]
          Length = 371

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 12  CKHTDCVEVCPVDCFYEG-----ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C   DC  +C   C   G     + F  + PD C  CG+C   CP   I+
Sbjct: 319 CTRIDC-GLCAASCLGGGIRLSSDGFYTVDPDACTGCGLCAARCPEHRIR 367


>gi|158522074|ref|YP_001529944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510900|gb|ABW67867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 385

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           CVE CPVD    G    A+  ++ CI CG+C   CP  AI
Sbjct: 328 CVERCPVDAIVLGSEGTAVREEKYCIGCGICARFCPEGAI 367


>gi|91203437|emb|CAJ71090.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 700

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV    C+ C    CV VCP D   F  GE    I  D C  CG+C  ECP  AI+  T
Sbjct: 491 AYVDEHLCVGC--ITCVRVCPFDVPEFRNGEITAYIGGD-CQSCGLCIVECPAKAIRFKT 547


>gi|87200306|ref|YP_497563.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
 gi|115502536|sp|Q2G5Z4|NUOI_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|87135987|gb|ABD26729.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
          Length = 161

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIV 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        N EYAT+     T++E L   AK+     K+E+  + N
Sbjct: 118 EGP----------NFEYATE-----TREELLYDKAKLLSNGDKWERAIAAN 153


>gi|320535768|ref|ZP_08035850.1| ferredoxin [Treponema phagedenis F0421]
 gi|320147378|gb|EFW38912.1| ferredoxin [Treponema phagedenis F0421]
          Length = 56

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++E CI C    C   CPV+   E  +   I    CI CG C   CP  AI  +
Sbjct: 1  MAYKISEECINCGA--CKSECPVNAISEQTDMHVIDAGLCISCGACAEVCPAQAISEE 56


>gi|313672609|ref|YP_004050720.1| tetrathionate reductase beta subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939365|gb|ADR18557.1| tetrathionate reductase beta subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 217

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+ CPV+  Y+G + L +  D  CI CG C   CP +A   D   G+    
Sbjct: 92  CNHCENPPCVKPCPVNATYKGPDGLVVIDDNVCIGCGKCVKACPYNARFLDPIRGIANKC 151

Query: 68  KI--NSEYATQWPNITTKKESLPSAAKMDG 95
               +  Y+ + P      E+ P+ AK+ G
Sbjct: 152 SFCDHRIYSGKLPACV---EACPTTAKIFG 178


>gi|288871693|ref|ZP_06410268.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288862395|gb|EFC94693.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 88

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ VCP +C  +G  F  I  + CI CG C   CP  AIK
Sbjct: 47 KCLSVCPSNCIEQGPPF-QIREENCIHCGTCYKTCPYAAIK 86


>gi|255322780|ref|ZP_05363922.1| electron transport protein HydN [Campylobacter showae RM3277]
 gi|255300122|gb|EET79397.1| electron transport protein HydN [Campylobacter showae RM3277]
          Length = 248

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFDDNCIELHEEICIGCKLCTIACPYGAISSSAE 104


>gi|269928392|ref|YP_003320713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787749|gb|ACZ39891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 290

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++++ C  C +  C+E CP       E + + +  D C  CG C P CP   I  D   G
Sbjct: 100 MMSDVCKHCVNAGCMEACPTGAIIRTEFDTVVVQQDVCNGCGYCVPACPFGVIALDLGDG 159


>gi|119899774|ref|YP_934987.1| iron-sulfur cluster-binding protein [Azoarcus sp. BH72]
 gi|119672187|emb|CAL96101.1| conserved hypothetical iron-sulfur cluster-binding protein
           [Azoarcus sp. BH72]
          Length = 701

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 11  LCKHT--------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H+        +C+EVC  +      N + + P  C  CG C   CP  A+
Sbjct: 315 LCAHSRAKKPGCNNCIEVCSTEAIRADGNVITVDPYLCKGCGTCSTVCPSGAL 367


>gi|110678320|ref|YP_681327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseobacter denitrificans OCh 114]
 gi|109454436|gb|ABG30641.1| 4Fe-4S binding domain protein [Roseobacter denitrificans OCh 114]
          Length = 252

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGV 138


>gi|304559052|gb|ADM41716.1| Pyridine nucleotide-disulfide oxidoreductase family protein
          [Edwardsiella tarda FL6-60]
          Length = 655

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +LC+H +   C  VCP     +  + + +  ++CI C  C   CP  AI+  T+
Sbjct: 31 LLCRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAIEVITQ 84


>gi|298571367|gb|ADI87709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [uncultured
           Nitrospirae bacterium MY3-5B]
          Length = 266

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD-------TE 60
           C+ C+   C EVCPV   ++  +  +AI  D+CI C  C   CP  A   D         
Sbjct: 112 CMQCELPPCTEVCPVGATWKRLDGVVAIDYDKCIGCRYCLSACPYGARTSDFNEYYTENT 171

Query: 61  PGLELW-LKINSEYATQW 77
           P ++ + L  N+EY   W
Sbjct: 172 PKIQPYELLPNNEYGKAW 189


>gi|296134443|ref|YP_003641690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296033021|gb|ADG83789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 190

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C+   C + CP     + +  + I+   C+ C VC   CP  AI   T P  E
Sbjct: 63  QCRQCEDAPCAQACPTGAIRQEDGLVKINEQNCVGCKVCSMVCPFGAIVVTTVPNAE 119


>gi|293609132|ref|ZP_06691435.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829705|gb|EFF88067.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 180

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|292656847|ref|YP_003536744.1| ferredoxin [Haloferax volcanii DS2]
 gi|291371411|gb|ADE03638.1| ferredoxin (3Fe-4S)(4Fe-4S) [Haloferax volcanii DS2]
          Length = 109

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-------YEGENFLA--IHPDECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F       +   +  A   H D+CIDC +C   CPV
Sbjct: 37  THVAVDFDICLADGACLEDCPVDVFTWVDTPGHPESDIKAEPTHEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPG 62
           DAI  D +PG
Sbjct: 97  DAI--DVDPG 104


>gi|227828775|ref|YP_002830555.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|229585982|ref|YP_002844484.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238620967|ref|YP_002915793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|227460571|gb|ACP39257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|228021032|gb|ACP56439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238382037|gb|ACR43125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|323475842|gb|ADX86448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus REY15A]
 gi|323478584|gb|ADX83822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus HVE10/4]
          Length = 89

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIIVHYERCLECGAALVACPYGAIK 76


>gi|206578002|ref|YP_002237195.1| AegA protein [Klebsiella pneumoniae 342]
 gi|290508337|ref|ZP_06547708.1| oxidoreductase Fe-S binding subunit [Klebsiella sp. 1_1_55]
 gi|206567060|gb|ACI08836.1| AegA protein [Klebsiella pneumoniae 342]
 gi|289777731|gb|EFD85728.1| oxidoreductase Fe-S binding subunit [Klebsiella sp. 1_1_55]
          Length = 660

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 8   NCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           N I C+H +   CV  CP D   +  + + +  ++CI C  C   CP   ++    P
Sbjct: 52  NAITCRHCEDAPCVRSCPNDAIAQSGDSVQVSQEKCIGCKSCMVACPFGVMQVVVTP 108


>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
           [Pelotomaculum thermopropionicum SI]
          Length = 530

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGL 63
           + CILC    C+EVC  V+  Y   +   +    CI+CG C   CP  AI  + DT+   
Sbjct: 91  QKCILCGQ--CLEVCKNVESVYGYYDLPVVDETICINCGQCSMACPSGAISERDDTKKVF 148

Query: 64  E 64
           E
Sbjct: 149 E 149


>gi|94498903|ref|ZP_01305441.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
 gi|94428535|gb|EAT13507.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
          Length = 195

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP- 57
           M  V+ E+ CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I   
Sbjct: 108 MVAVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIEDECTGCDLCLDPCPVDCIDML 165

Query: 58  DTEPGLELW 66
             + G++ W
Sbjct: 166 PVDQGIQAW 174


>gi|90411449|ref|ZP_01219460.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           profundum 3TCK]
 gi|90327662|gb|EAS44005.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           profundum 3TCK]
          Length = 204

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+ F+ +  D CI C  CE  CP  A + + E
Sbjct: 59  SYYLSIACNHCDEPACTKVCPSGAMHKREDGFVIVDEDVCIGCKYCEMACPYGAPQYNEE 118

Query: 61  PG 62
            G
Sbjct: 119 KG 120


>gi|91772585|ref|YP_565277.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcoides
           burtonii DSM 6242]
 gi|91711600|gb|ABE51527.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A with
           C-terminal mvhD-like electron transfer domain
           [Methanococcoides burtonii DSM 6242]
          Length = 786

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 19/71 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECIDCG 44
           YV+ +NC  C   +C  VCPVD     ++ L                   I+ D C+ CG
Sbjct: 237 YVIIDNCKGCID-ECARVCPVDISNPFDSGLGKTKAINMPIPQAIPQTAFINSDYCVGCG 295

Query: 45  VCEPECPVDAI 55
           +C+  CP DAI
Sbjct: 296 LCKQACPADAI 306


>gi|320184796|gb|EFW59587.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           CDC 796-83]
          Length = 222

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|225180960|ref|ZP_03734408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168441|gb|EEG77244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 90

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C+   C+ VCP   F+  E E  L I    C++C  CEP CP
Sbjct: 25 AKHCKTCRLRACLYVCPSAVFFWDELEEKLDIFWRRCVECAACEPACP 72


>gi|119473031|ref|ZP_01614853.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
 gi|119444609|gb|EAW25921.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
          Length = 184

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|20093747|ref|NP_613594.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing
           [Methanopyrus kandleri AV19]
 gi|19886647|gb|AAM01524.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin
           containing [Methanopyrus kandleri AV19]
          Length = 357

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 13/61 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C E CP D              E E  + +  D+C+ CGVC   CPVDAI
Sbjct: 154 EKCIYCKA--CEEACPADAITVERPKPSAADPEPEFTIEVDEDKCVYCGVCMRTCPVDAI 211

Query: 56  K 56
           K
Sbjct: 212 K 212



 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 20/83 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C+ C    CVEVCP            G+  +  HP+ C  CG C   CPV+AI     
Sbjct: 273 EECVGCGL--CVEVCPCGALEFEKGGKAGKTKIVAHPETCAYCGACARACPVNAI----- 325

Query: 61  PGLELWLKINSEYATQWPNITTK 83
                   +  E  T  P + TK
Sbjct: 326 -------TVVREGVTAMPELPTK 341


>gi|325276132|ref|ZP_08141941.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas sp. TJI-51]
 gi|324098731|gb|EGB96768.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas sp. TJI-51]
          Length = 806

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           D+CI+CG CEP CP   +       + +W  I    A Q   I T++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIQ---AKQRAGIETRE 581


>gi|225850220|ref|YP_002730454.1| 4Fe-4S binding domain protein [Persephonella marina EX-H1]
 gi|225646094|gb|ACO04280.1| 4Fe-4S binding domain protein [Persephonella marina EX-H1]
          Length = 360

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 15 TDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CV+VCPV D  Y  E  L I  ++C++CG C   CP +A 
Sbjct: 24 SKCVDVCPVKDAIYFDEGKLKIDDEKCVNCGACFGICPTEAF 65


>gi|206891168|ref|YP_002247862.1| tetrathionate reductase, subunit B [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743106|gb|ACI22163.1| tetrathionate reductase, subunit B [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 256

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +LC H D   CV VCPV   ++  + + +     CI C  C   CP  A   +  P  + 
Sbjct: 117 LLCNHCDNAPCVRVCPVKATFKRADGITMQDMHRCIGCKFCMAGCPYGARNYNFLPPRDY 176

Query: 66  WLKINSEYATQWPNITTK 83
             ++N EY T+   +  K
Sbjct: 177 IKELNPEYPTRTIGVVEK 194


>gi|163732626|ref|ZP_02140071.1| 4Fe-4S binding domain protein [Roseobacter litoralis Och 149]
 gi|161393986|gb|EDQ18310.1| 4Fe-4S binding domain protein [Roseobacter litoralis Och 149]
          Length = 252

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEGV 138


>gi|170743893|ref|YP_001772548.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168198167|gb|ACA20114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 320

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++++ C  C +  C+E CP    ++ E + + +  D C  CG C P CP   +   T  G
Sbjct: 116 MMSDVCKHCHNAPCLEACPTGALFKTEFDTVVVQQDICNGCGYCVPACPFGVVDVSTVDG 175


>gi|118443510|ref|YP_878766.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
 gi|118133966|gb|ABK61010.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
          Length = 304

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C     +E C +   Y+ +N + I  ++CI+CG C   C  +A++ + E G++++
Sbjct: 170 DKCKSCGKCGVIEKCRMKAAYKEDNKVVIDREKCINCGKCIENCYFNAMETNQE-GMKIY 228

Query: 67  L 67
           L
Sbjct: 229 L 229


>gi|304438798|ref|ZP_07398725.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372721|gb|EFM26300.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 315

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CI C    C + CP D  +  +N  AI   +CI+CG+C   CP  AI
Sbjct: 222 SNGCIGCGI--CEKKCPKDAIHVTDNLAAIDYTKCINCGICVANCPTGAI 269


>gi|269216153|ref|ZP_06160007.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130412|gb|EEZ61490.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 190

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y V+  C  C    C+EVCP    + +G   + +    CI CG C   CP  A  P  
Sbjct: 39  FAYHVSLACNHCDQPACMEVCPTGAMHKDGLGLVQVDHMRCIGCGYCTIACPYHA--PSI 96

Query: 60  EPGLE 64
           +P L 
Sbjct: 97  DPALH 101


>gi|302875371|ref|YP_003844004.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|307688950|ref|ZP_07631396.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|302578228|gb|ADL52240.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
          Length = 417

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C+ C    C + CP+      +   A+  + C+ CGVC   CP  +I
Sbjct: 287 VIKDGCVGCGK--CAKACPIGAITMKDKKAAVDEEICLGCGVCVRNCPKKSI 336


>gi|218780880|ref|YP_002432198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762264|gb|ACL04730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 366

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E+C+ C    C E C  +     E      ++PDECI CGVC   CP  A+K
Sbjct: 288 VAGEDCVGCG--TCTERCFFNALTVDEETERAVVNPDECIGCGVCALGCPTGALK 340


>gi|146304647|ref|YP_001191963.1| NADH dehydrogenase subunit I [Metallosphaera sedula DSM 5348]
 gi|145702897|gb|ABP96039.1| NADH-quinone oxidoreductase, chain I [Metallosphaera sedula DSM
           5348]
          Length = 169

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  VCP D       +G+ F  I+   C+ C  C   CPVDA+K
Sbjct: 57  MIRLYKDVCIGC--TLCAMVCPADAMKMVTDQGKKFPTINYGRCVFCAFCVDICPVDALK 114


>gi|312136489|ref|YP_004003826.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanothermus
          fervidus DSM 2088]
 gi|311224208|gb|ADP77064.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanothermus
          fervidus DSM 2088]
          Length = 80

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI C    C+  CP  C  E      I+ D C  CG+CE ECPV+AIK   E
Sbjct: 32 KKCIKC--NTCILFCPEGCIDENH---EINYDYCKGCGICEEECPVNAIKTVKE 80


>gi|262378879|ref|ZP_06072036.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
 gi|262300164|gb|EEY88076.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
          Length = 87

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCD--VCEPVCPNEAIFMGEMIYEIHPDLCTECVGHHEQPQCQLFCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKES 86
          I  D        ++   E   ++  +T +K +
Sbjct: 59 IPHDPN-----HVETEDELMQKYKMLTAQKSA 85


>gi|291612995|ref|YP_003523152.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583107|gb|ADE10765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 431

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 17  CVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+  CP       +G+  L I+P  CI  GVC P CP +AIK
Sbjct: 64  CITACPEGAIGMIKGKAVL-INPTHCIGHGVCAPACPHNAIK 104


>gi|149926238|ref|ZP_01914500.1| ferredoxin [Limnobacter sp. MED105]
 gi|149825056|gb|EDM84268.1| ferredoxin [Limnobacter sp. MED105]
          Length = 160

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++CI C  T C++ CPVD      +   A+  + C  C +C P CPVD I     P    
Sbjct: 30  QHCIGC--TLCIKACPVDAIVGSSKRRHAVLAELCTGCELCIPPCPVDCIDMVFMPEFSA 87

Query: 66  WLKINSEYA-----TQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           W +  +  A     T+   +  +KE      +   + +  E   +P+P
Sbjct: 88  WDQTQAHAARTRMQTREIRLERQKEEQAERLEAKAIHKLDELDDTPSP 135


>gi|17229800|ref|NP_486348.1| hypothetical protein alr2308 [Nostoc sp. PCC 7120]
 gi|17131400|dbj|BAB74007.1| alr2308 [Nostoc sp. PCC 7120]
          Length = 425

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 17  CVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C ++CP       ++ +NF  +   +C  CG C P CP D I
Sbjct: 116 CEKICPAQAIVFNHQKDNFSGVESQKCYGCGRCLPVCPYDII 157


>gi|331001648|ref|ZP_08325171.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413369|gb|EGG92736.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 507

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C EVCP       +   F +I+ ++CI CG C   C  +AI   T P
Sbjct: 117 VTDGCQGCLAHPCSEVCPTGAVKIDKESGFSSINQEKCIKCGRCANVCAYNAIIVQTRP 175



 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT------- 59
           N I+ +   C   C +D     EN  A I  D+C+ CG C   CP  AI   +       
Sbjct: 167 NAIIVQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVNCPFGAISDKSQIFQTIR 226

Query: 60  --EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
             + G  ++  I   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 227 AIQSGDRVYAAIAPAFVGQFGPKVTPGK--LRAAMKELGFADVFE 269


>gi|313125962|ref|YP_004036232.1| NADH:ubiquinone oxidoreductase chain i-like protein
           [Halogeometricum borinquense DSM 11551]
 gi|312292327|gb|ADQ66787.1| NADH:ubiquinone oxidoreductase chain I-like protein
           [Halogeometricum borinquense DSM 11551]
          Length = 114

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 11/70 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHP---DECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F         E+ + + P   D+CIDC +C   CPV
Sbjct: 42  THVAVDFDICIGDGACLEDCPVDVFSWVDTPGHPESEVKVQPAREDQCIDCMLCVDVCPV 101

Query: 53  DAIKPDTEPG 62
           DAI  D +PG
Sbjct: 102 DAI--DVDPG 109


>gi|299771412|ref|YP_003733438.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1]
 gi|298701500|gb|ADI92065.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1]
          Length = 180

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  ++  +KE+L
Sbjct: 116 LTPDFELG---------EYVRQ--DLVYEKENL 137


>gi|317050575|ref|YP_004111691.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945659|gb|ADU65135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurispirillum indicum S5]
          Length = 260

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CPV+    Y+ +N + +H +  CI CG+C+  CP      D +
Sbjct: 63  CNHCTDAPCVTACPVNPKAMYKKDNGITMHNEARCIGCGMCQSACPYTVASLDAD 117


>gi|288934133|ref|YP_003438192.1| glutamate synthase, small subunit [Klebsiella variicola At-22]
 gi|288888862|gb|ADC57180.1| glutamate synthase, small subunit [Klebsiella variicola At-22]
          Length = 660

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 8   NCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           N I C+H +   CV  CP D   +  + + +  ++CI C  C   CP   ++    P
Sbjct: 52  NAITCRHCEDAPCVRSCPNDAIAQSGDSVQVSQEKCIGCKSCMVACPFGVMQVVVTP 108


>gi|262376770|ref|ZP_06069998.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii
           SH145]
 gi|262308480|gb|EEY89615.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii
           SH145]
          Length = 180

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 MTPDFELG 123


>gi|260448069|gb|ACX38491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|315137485|dbj|BAJ44644.1| conserved hypothetical protein [Escherichia coli DH1]
          Length = 162

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVVSGENP 161


>gi|313126882|ref|YP_004037152.1| NADH-quinone oxidoreductase, chain i [Halogeometricum borinquense
          DSM 11551]
 gi|312293247|gb|ADQ67707.1| NADH-quinone oxidoreductase, chain I [Halogeometricum borinquense
          DSM 11551]
          Length = 153

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVQDDQRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|171463232|ref|YP_001797345.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192770|gb|ACB43731.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 228

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK--- 56
           + ++  + CI C  T C++ CPVD        +  +  D C  C +C P CPVD I    
Sbjct: 87  VAFIDPKKCIGC--TLCIQACPVDAIVGASKQMHVVLSDWCTGCNLCIPPCPVDCISMID 144

Query: 57  -PDTEPGLELWLKINSEYATQ 76
               + G + W +  +++A +
Sbjct: 145 VTGGQTGWDAWSQDLADFARK 165


>gi|304405130|ref|ZP_07386790.1| conserved hypothetical protein [Paenibacillus curdlanolyticus
          YK9]
 gi|304346009|gb|EFM11843.1| conserved hypothetical protein [Paenibacillus curdlanolyticus
          YK9]
          Length = 121

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  +V+ N CI C+   CV+VCP + F   G   +    D+C  C +CE  CPVDA+   
Sbjct: 1  MIELVSANRCIGCQL--CVKVCPTNVFDMAGMLPVIARQDDCQTCFMCEAYCPVDALY-- 56

Query: 59 TEPGLELWLKINSE 72
            P  E+ + ++ E
Sbjct: 57 VAPQAEVSVAVDEE 70


>gi|289191573|ref|YP_003457514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938023|gb|ADC68778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 62

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 11 LCKHTDCVEV---CPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          LCK  +C E    CP++ F  EG+  +    ++C  CGVCE  CP  A+K + E
Sbjct: 9  LCKGAECAECVNNCPMEVFEIEGDRVVVAREEDCTYCGVCEDVCPTGAVKVEPE 62


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y VT++CI C  T C+  CPV     +      I+ D+CI CG+C   CP  AI
Sbjct: 572 VKYEVTDSCIGC--TKCLRACPVLAIKGKIREKHIINIDKCIRCGLCYEACPTKAI 625


>gi|218780619|ref|YP_002431937.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762003|gb|ACL04469.1| Putative uncharacterized protein (contains partial HdrA and MvhD
           domains) [Desulfatibacillum alkenivorans AK-01]
          Length = 532

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V  + C +C    C   CP    Y     + I    C  CG+C  ECP DAI+
Sbjct: 333 FVDVDKCTVC--LTCYRCCPHGAIYWDSRAI-IAESACQGCGICASECPNDAIQ 383


>gi|149912662|ref|ZP_01901196.1| iron-sulfur cluster-binding protein [Roseobacter sp. AzwK-3b]
 gi|149813068|gb|EDM72894.1| iron-sulfur cluster-binding protein [Roseobacter sp. AzwK-3b]
          Length = 259

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDAAEGV 138


>gi|332280430|ref|ZP_08392843.1| 4Fe-4S binding protein [Shigella sp. D9]
 gi|332102782|gb|EGJ06128.1| 4Fe-4S binding protein [Shigella sp. D9]
          Length = 163

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMISIQSLPGDTRQQI 115

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 116 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 162


>gi|262275677|ref|ZP_06053486.1| tetrathionate reductase subunit B [Grimontia hollisae CIP 101886]
 gi|262219485|gb|EEY70801.1| tetrathionate reductase subunit B [Grimontia hollisae CIP 101886]
          Length = 255

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATYQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|256827540|ref|YP_003151499.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256583683|gb|ACU94817.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 299

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C    CV VCP    Y   +G   +    D+CI C  C   CP D  +      +
Sbjct: 79  RSCMHCTDAACVNVCPSGSLYHDPDGTGLVIYDVDKCIGCQYCRSACPFDVPRHTGIGVV 138

Query: 64  ELWLKIN 70
              +KIN
Sbjct: 139 GGGIKIN 145


>gi|154150816|ref|YP_001404434.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999368|gb|ABS55791.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 128

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T  C+ C    C+ +CP + F ++ +  LAI  D CI CG C P CP  A+
Sbjct: 74  VNTSECVDCGA--CISICPREVFSFDTDWKLAIAEDRCIVCGKCVPACPHSAL 124


>gi|160899678|ref|YP_001565260.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160365262|gb|ABX36875.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 281

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 136 LCNHCDNPPCVPVCPVQATFQRSDGIVLVDNERCVGCGYCVQACPYDA 183


>gi|120405062|ref|YP_954891.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957880|gb|ABM14885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 543

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C    C+  CP D   +   G+ +     D+C  C VC  +CPV AI+   EP
Sbjct: 489 NCFECD--GCLGACPEDAVIKLGVGQRY-RFDYDKCTGCAVCADQCPVHAIEMFGEP 542


>gi|75906350|ref|YP_320646.1| 4Fe-4S ferredoxin [Anabaena variabilis ATCC 29413]
 gi|75700075|gb|ABA19751.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anabaena variabilis
           ATCC 29413]
          Length = 383

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 17  CVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C ++CP       ++ +NF  +   +C  CG C P CP D I
Sbjct: 116 CEKICPAQAIVFNHQKDNFSGVESQKCYGCGRCLPVCPYDII 157


>gi|325957816|ref|YP_004289282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329248|gb|ADZ08310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 368

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ E C  C    C + CPV  F   +   AI+ D+CI C  C   CP + IK +    +
Sbjct: 190 IINEGCNSCGR--CADSCPVSAFEISKAGAAINYDKCIACNNCLGACPDELIKLNWST-M 246

Query: 64  ELWLKINSEYA 74
           E +++  +EYA
Sbjct: 247 EEFIERMTEYA 257


>gi|167748568|ref|ZP_02420695.1| hypothetical protein ANACAC_03341 [Anaerostipes caccae DSM 14662]
 gi|167651882|gb|EDR96011.1| hypothetical protein ANACAC_03341 [Anaerostipes caccae DSM 14662]
          Length = 416

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 4   VVTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTE 60
           + TE+C  C +   C   C  D   E +  L+I PD+C  CGVC   C +D +    D  
Sbjct: 50  IHTESCESCAYDRACKNSCIFDAIEEVDGKLSIDPDKCSGCGVCIESCRLDKLAESKDIF 109

Query: 61  PGL--------ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           P L        +++  I   +  Q+ N +  +  L SA K  G K   E
Sbjct: 110 PVLKEVRSEEKDVYALIAPAFVGQYENASPGQ--LRSALKAAGFKGMVE 156


>gi|117618050|ref|YP_856311.1| NADH dehydrogenase subunit I [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|156632700|sp|A0KJ60|NUOI_AERHH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117559457|gb|ABK36405.1| NADH-quinone oxidoreductase chain i [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 180

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKSEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|120599742|ref|YP_964316.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120559835|gb|ABM25762.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 234

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 2   TYVVTENCILCKHTD---CVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           TY+ T    LC H D   CV+VCP    ++ +  L + + DECI C  C   CP   I  
Sbjct: 51  TYIPT----LCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISF 106

Query: 58  DTEPGLELW 66
           +T      W
Sbjct: 107 NTATPHRRW 115


>gi|315651297|ref|ZP_07904325.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
 gi|315486449|gb|EFU76803.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
          Length = 507

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C EVCP       +   F +I+ ++CI CG C   C  +AI   T P
Sbjct: 117 VTNGCQGCLAHPCAEVCPTGAVKIDKESGFSSINQEKCIKCGRCANVCAYNAIIIQTRP 175



 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT------- 59
           N I+ +   C   C +D     EN  A I  D+C+ CG C   CP  AI   +       
Sbjct: 167 NAIIIQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVNCPFGAISDKSQIFQTIR 226

Query: 60  --EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
             + G  ++  I   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 227 AIQSGERVYAAIAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|312136493|ref|YP_004003830.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermus fervidus DSM 2088]
 gi|311224212|gb|ADP77068.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermus fervidus DSM 2088]
          Length = 128

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 10 ILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          I C H D     C+ +CP D      + + I  D+CI CG C   CPV AI  D E GL
Sbjct: 33 IFCLHCDPKNAPCLNICPSDAIKSINDAIVIDRDKCIGCGSCVNVCPVGAIFLD-ERGL 90


>gi|310642487|ref|YP_003947245.1| glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
 gi|309247437|gb|ADO57004.1| Glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
          Length = 209

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TYV  + C  C++  C   CPV    + +  + I  D CI C  C   CP  AI  +  P
Sbjct: 79  TYVPVQ-CRHCENAPCAHACPVQAIRQEDGVVMIDEDRCIGCTSCVLACPFGAI--EVSP 135

Query: 62  GLELWLKINSEYATQWPNITTKKESLPS 89
                  I     T   N T    +  S
Sbjct: 136 VYRAGHVITQSGLTHRANRTALPRTAAS 163


>gi|255011300|ref|ZP_05283426.1| putative hydrogenase [Bacteroides fragilis 3_1_12]
 gi|313149111|ref|ZP_07811304.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137878|gb|EFR55238.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 489

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 112 VNYEITNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167


>gi|239624842|ref|ZP_04667873.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521228|gb|EEQ61094.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 215

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDA 54
           M Y +  +C  C    CV+ CP    Y+ + +  +  +E   CI CG C+  CP +A
Sbjct: 78  MRYNMNISCNHCSKPACVDACPTGRIYKEDTYGIVLANEEIPCISCGRCQKACPWEA 134


>gi|254509840|ref|ZP_05121907.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533551|gb|EEE36539.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 69  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWSCPYGARELDQAEGV 127


>gi|188584735|ref|YP_001916280.1| Fe-S cluster domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349422|gb|ACB83692.1| Fe-S cluster domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 460

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E+CI C H  C++ CP            I  + CIDCG C   CP +A   +++  +   
Sbjct: 13  ESCIGCVH--CLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNAKIAESD-NISQI 69

Query: 67  LKINSEYATQWPNITTK--KESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + A   P++  +  K+ LP       +   ++K FS + GG+
Sbjct: 70  DNFQHKVAVVPPSVLVQFPKDVLPKEVFRAFLDLGFDKVFSISLGGE 116


>gi|154502471|ref|ZP_02039531.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
 gi|153796867|gb|EDN79287.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
          Length = 506

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 119 YEVSNMCKGCLAHPCSEVCPKGAISMVNGKSYIDQEKCIKCGKCKAVCPYDAIAKKERP 177


>gi|319425621|gb|ADV53695.1| respiratory arsenate reductase, FeS subunit, ArrB [Shewanella
           putrefaciens 200]
          Length = 234

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 2   TYVVTENCILCKHTD---CVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           TY+ T    LC H D   CV+VCP    ++ +  L + + DECI C  C   CP   I  
Sbjct: 51  TYIPT----LCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISF 106

Query: 58  DTEPGLELW 66
           +T      W
Sbjct: 107 NTATPHRRW 115


>gi|116695680|ref|YP_841256.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia
          eutropha H16]
 gi|113530179|emb|CAJ96526.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia
          eutropha H16]
          Length = 383

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CPV       N   +  + C  C  C P CP  AI
Sbjct: 19 CIRC--NSCEESCPVGAITHDHNNYVVDVERCNHCRACLPPCPTGAI 63


>gi|77360047|ref|YP_339622.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874958|emb|CAI86179.1| Electron transport complex protein rnfB [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 184

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|45359028|ref|NP_988585.1| hypothetical protein MMP1465 [Methanococcus maripaludis S2]
 gi|45047903|emb|CAF31021.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 252

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV +  CI C+   C E+CPVD   E   ++   I P++C+ C +C   CPV AI  +  
Sbjct: 42  YVESNKCIRCEL--CYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAI--NVL 97

Query: 61  PGLELWLKINSEYATQWPNITTKKESL 87
            G     + N  Y  +  ++T +K  L
Sbjct: 98  EGRAKLEEDNVVYELKEIDVTHRKIRL 124



 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           NC++C      E+CPV      +  + +    CI CG CE  CPV AI
Sbjct: 203 NCMVCS-----EICPVGAIVYEDGLMKLDDKMCIFCGKCEKNCPVTAI 245


>gi|45359255|ref|NP_988812.1| polyferredoxin, associated with F420-non-reducing hydrogenase
           [Methanococcus maripaludis S2]
 gi|45048130|emb|CAF31248.1| polyferredoxin, associated with F420-non-reducing hydrogenase
           [Methanococcus maripaludis S2]
          Length = 383

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 18/112 (16%)

Query: 8   NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDE-------CIDCGVCEPECPVDAI 55
           +C+LC+   CVE+CP +        E      I P E       C+ CGVC PECPVDAI
Sbjct: 78  HCVLCEK--CVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECPVDAI 135

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +    ++    I     +Q    T    ++  A K+   +QK  K F+ N
Sbjct: 136 SIEDIAVIDTDKCIYCTVCSQ----TCPWNAIFVAGKLPQKRQKTIKSFTVN 183



 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI---------K 56
           E CI C+   CVE CP     Y GE      P+ C  CG+C   CPV+ I         K
Sbjct: 185 EECIGCEK--CVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLEVEYASAK 242

Query: 57  PDTEPGLELWLKINSEY 73
           P T+ GL +W +    Y
Sbjct: 243 PVTDEGL-VWSEEKCAY 258


>gi|305665372|ref|YP_003861659.1| putative iron-sulfur protein [Maribacter sp. HTCC2170]
 gi|88710127|gb|EAR02359.1| probable iron-sulfur protein [Maribacter sp. HTCC2170]
          Length = 472

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI CK   CV VCP +        L     ECI+C  C  EC     K D   GL    
Sbjct: 268 DCIDCKQ--CVHVCPTNIDIRNGTQL-----ECINCTACIDECDAIMEKIDKPKGL---- 316

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDG 95
                YA++  +  TKKE      ++ G
Sbjct: 317 ---IRYASE--DEITKKEKFKFTPRLKG 339


>gi|127511541|ref|YP_001092738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636836|gb|ABO22479.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 190

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C++  CV VCP    Y G++  ++I  D+C+ C  C   CP  V  I P+T+
Sbjct: 59  SCQQCENAPCVTVCPTGAAYVGDDGLVSIKEDKCVGCMYCVAACPYKVRFINPETK 114


>gi|332086808|gb|EGI91944.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 162

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|326387453|ref|ZP_08209062.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208109|gb|EGD58917.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 161

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDA+ 
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIFCGFCQEACPVDAVV 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        N EYAT+     T++E L   AK+     K+E+  + N
Sbjct: 118 EGP----------NFEYATE-----TREELLYDKAKLLANGDKWERAIAAN 153


>gi|299131979|ref|ZP_07025174.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298592116|gb|EFI52316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 252

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+   +  + ++ D CI C +C   CP  A + D + G+
Sbjct: 78  RSCLHCEEPACVTVCPTGASYKRTEDGIVLVNADTCIGCKLCSWACPYGAREFDEDDGV 136


>gi|262165101|ref|ZP_06032838.1| ferredoxin [Vibrio mimicus VM223]
 gi|262172136|ref|ZP_06039814.1| ferredoxin [Vibrio mimicus MB-451]
 gi|261893212|gb|EEY39198.1| ferredoxin [Vibrio mimicus MB-451]
 gi|262024817|gb|EEY43485.1| ferredoxin [Vibrio mimicus VM223]
          Length = 46

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            +++++N+E A  WPN+T  K ++  AAK DGV  K +
Sbjct: 5   RIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLD 42


>gi|256829504|ref|YP_003158232.1| FAD linked oxidase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578680|gb|ACU89816.1| FAD linked oxidase domain protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 937

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 33  LAIHP--DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           L  HP  D C+DCG CEP CP   I       +  W +I
Sbjct: 532 LTSHPKIDMCVDCGFCEPVCPSRHIAFTPRQRIAAWREI 570


>gi|187251160|ref|YP_001875642.1| hydrogenase large subunit domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971320|gb|ACC98305.1| Hydrogenase large subunit domain protein [Elusimicrobium minutum
           Pei191]
          Length = 482

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C +VCP +   ++ E    I   +C++CG+C   CP  AI     P
Sbjct: 91  YEVTAACRGCIAHRCEQVCPKNAISFDHEQKAHIDKTKCVECGLCAKVCPFSAILSYKRP 150


>gi|227831507|ref|YP_002833287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|229580456|ref|YP_002838856.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|229580894|ref|YP_002839293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|284999058|ref|YP_003420826.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
 gi|227457955|gb|ACP36642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|228011172|gb|ACP46934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|228011610|gb|ACP47371.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|284446954|gb|ADB88456.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
          Length = 89

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIIVHYERCLECGAALVACPYGAIK 76


>gi|150402795|ref|YP_001330089.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033825|gb|ABR65938.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 481

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 12/64 (18%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           VTENCILC   +C+  CP D   E   F  +   E         CI+CG+C  +CP +A+
Sbjct: 225 VTENCILC--GNCITKCPKD-VLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281

Query: 56  KPDT 59
           + +T
Sbjct: 282 RFET 285



 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          TY   ENC   + + C+EVCP +     +G+ F       CI CG C  ECP  AIK + 
Sbjct: 11 TYEECENCKNKEISKCMEVCPTNAIKMIDGKAF------SCITCGTCAKECPTGAIKKNE 64

Query: 60 EPGLELWLKI 69
            G  +  K+
Sbjct: 65 YGGYYVNRKL 74


>gi|15669380|ref|NP_248188.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|41018414|sp|Q58593|VHUB_METJA RecName: Full=Polyferredoxin protein vhuB
 gi|1591821|gb|AAB99195.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 394

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E CI C    CVEVCP D    + EN + I P  C  C +C   CPVDA        
Sbjct: 205 VNAEKCIYC--LKCVEVCPGDMIKVDEENLIVIPPKSCPACKLCVNICPVDA-------- 254

Query: 63  LELWLKINSEY 73
           L+L +K++S +
Sbjct: 255 LDLEVKLSSPH 265


>gi|191166000|ref|ZP_03027836.1| 4Fe-4S binding protein [Escherichia coli B7A]
 gi|256019317|ref|ZP_05433182.1| putative oxidoreductase [Shigella sp. D9]
 gi|309793956|ref|ZP_07688381.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|190903948|gb|EDV63661.1| 4Fe-4S binding protein [Escherichia coli B7A]
 gi|308122363|gb|EFO59625.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
          Length = 162

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMISIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|320182216|gb|EFW57119.1| putative oxidoreductase, Fe-S subunit [Shigella boydii ATCC 9905]
          Length = 162

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|282849346|ref|ZP_06258731.1| putative ferredoxin [Veillonella parvula ATCC 17745]
 gi|282581050|gb|EFB86448.1| putative ferredoxin [Veillonella parvula ATCC 17745]
          Length = 65

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG+    I    CI CG C   CPV A+K
Sbjct: 4  LKFNIDDTCVKCGA--CAEDCPVQCITEGKTQFIIGKG-CIGCGDCYSICPVGAVK 56


>gi|242309040|ref|ZP_04808195.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
 gi|239524464|gb|EEQ64330.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
          Length = 83

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEKCIACDA--CREECPNEAIEEGDPYYIIDPERCTECYGFYDEPACLSVCPVDA 58

Query: 55 I--KPDTEPGLE 64
          I   PD    LE
Sbjct: 59 IVSDPDNIESLE 70


>gi|218782788|ref|YP_002434106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764172|gb|ACL06638.1| MvH Hase/Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1021

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           VTE+C  C    CV+VCP       E+          + + P  C  CGVC   CP D +
Sbjct: 938 VTEHCDGCAL--CVDVCPYRAIRLQESTGEDGRMHRMIQVDPALCKGCGVCAATCPKDGV 995

Query: 56  K 56
           +
Sbjct: 996 R 996


>gi|218887556|ref|YP_002436877.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758510|gb|ACL09409.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 188

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
           C  C++  C+E CPV  + + E+ + +H  D CI CG C   CP  A K
Sbjct: 59  CNHCENPVCLEQCPVKAYTKREDGIVVHDQDACIGCGNCVRSCPYGAPK 107


>gi|239618161|ref|YP_002941483.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
 gi|239506992|gb|ACR80479.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
          Length = 478

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 17  CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           CV  C V   Y  EN F+ I  ++C+ CG C   CP  AI   +  G ++ +++  E
Sbjct: 177 CVSACAVGATYSDENGFVLIDDEKCVQCGECAVACPFGAIVESSSIG-QVAVRLGKE 232


>gi|218781349|ref|YP_002432667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762733|gb|ACL05199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 369

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C +VCPV      +    I    CI CG C   CP  AI PD    +
Sbjct: 190 VNKEKCTGC--GSCEDVCPVGAAKLEDEISIIDAKVCIGCGECMTVCPEKAINPDWATDI 247

Query: 64  ELWLKINSEYA 74
             +++  +EYA
Sbjct: 248 GAFMERMTEYA 258


>gi|46201176|ref|ZP_00208000.1| COG1144: Pyruvate:ferredoxin oxidoreductase and related
          2-oxoacid:ferredoxin oxidoreductases, delta subunit
          [Magnetospirillum magnetotacticum MS-1]
          Length = 80

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C  E   +   + D C  CG+C  ECP  AIK
Sbjct: 26 ERCVKC--ATCWLYCPVQCVVEKAAWFDFNYDFCKGCGICAEECPHRAIK 73


>gi|89894374|ref|YP_517861.1| hypothetical protein DSY1628 [Desulfitobacterium hafniense Y51]
 gi|219668800|ref|YP_002459235.1| electron transfer flavoprotein alpha/beta-subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|89333822|dbj|BAE83417.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539060|gb|ACL20799.1| Electron transfer flavoprotein alpha/beta-subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 428

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 18/110 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  ++   CI C    CV  CP +    G++ + +   +C +CG C   CP + +     
Sbjct: 1   MAVIIGPGCISCGL--CVGECPSEALELGDSGVVVDAGKCTECGDCVSVCPSNILS---- 54

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                 L   +  + + P  T+ + S P+A        K EK  +P PGG
Sbjct: 55  ------LPEGAGKSAEEPKQTSTEPS-PAAP-----GAKVEKKAAPVPGG 92


>gi|330835139|ref|YP_004409867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567278|gb|AEB95383.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 488

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 9   CILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ CK  DC + CPV        F +   F A    +C+  G C  +CP D I
Sbjct: 419 CLSCKTVDCAKACPVGLTDMRASFIKKGEFKAF---KCVGAGECIEDCPYDNI 468


>gi|261252304|ref|ZP_05944877.1| NrfC protein [Vibrio orientalis CIP 102891]
 gi|260935695|gb|EEX91684.1| NrfC protein [Vibrio orientalis CIP 102891]
          Length = 229

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H D+C+ CG C   CP
Sbjct: 97  KSCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKDKCVGCGYCLAACP 143


>gi|257453944|ref|ZP_05619220.1| ferredoxin [Enhydrobacter aerosaccus SK60]
 gi|257448609|gb|EEV23576.1| ferredoxin [Enhydrobacter aerosaccus SK60]
          Length = 87

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC--GVCEPECPVDAIKPD 58
          M  ++T+ CI C    C  +CP D  Y GE    I P  C +C     EP+C +    PD
Sbjct: 1  MALIITDECINCDV--CEPLCPNDAIYVGELIYEIDPALCTECVGHFDEPQCSLFCPVPD 58

Query: 59 TEPGLELWLKINSEYATQWPNITTKKES 86
            P    +L+  ++   ++  IT  K S
Sbjct: 59 CIPKDPNYLETPAQLLLKFERITQTKTS 86


>gi|257094088|ref|YP_003167729.1| putative glutamate synthase (NADPH) small subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046612|gb|ACV35800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 540

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C   +C  VCP +   +    N    + D C  CG+C  ECP  AIK + E
Sbjct: 486 NCFECD--NCYGVCPDNAVIKLGPGNRFQFNYDYCKGCGMCVAECPCGAIKMEAE 538


>gi|257064870|ref|YP_003144542.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792523|gb|ACV23193.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 296

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVD 53
           C+ C    CV+VCP    ++ E    ++ + D+CI C  C   CP D
Sbjct: 80  CMHCTDAGCVQVCPSGALFKDEETGLVSYNKDKCIGCKYCAAACPFD 126


>gi|126664349|ref|ZP_01735333.1| D-lactate dehydrogenase, putative [Marinobacter sp. ELB17]
 gi|126630675|gb|EBA01289.1| D-lactate dehydrogenase, putative [Marinobacter sp. ELB17]
          Length = 938

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP + +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSNGLSLSPRQRIVIWRDIQAK 572


>gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 681

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C+  CPVD     +  +  +  DEC  C +C   CP+D I
Sbjct: 102 VAFIDESQCIGC--TRCLPACPVDAIVGAQRQVHTVLADECTGCRLCVDACPMDCI 155


>gi|88859826|ref|ZP_01134465.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
 gi|88817820|gb|EAR27636.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
          Length = 184

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|317470826|ref|ZP_07930207.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901653|gb|EFV23586.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 416

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 4   VVTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTE 60
           + TE+C  C +   C   C  D   E +  L+I PD+C  CGVC   C +D +    D  
Sbjct: 50  IHTESCESCAYDRACKNSCIFDAIEEVDGKLSIDPDKCSGCGVCIESCRLDKLAESKDIF 109

Query: 61  PGL--------ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           P L        +++  I   +  Q+ N +  +  L SA K  G K   E
Sbjct: 110 PVLKEVRSEEKDVYALIAPAFVGQYENASPGQ--LRSALKAAGFKGMVE 156


>gi|269139126|ref|YP_003295827.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
 gi|267984787|gb|ACY84616.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
          Length = 678

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +LC+H +   C  VCP     +  + + +  ++CI C  C   CP  AI+  T+
Sbjct: 54  LLCRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAIEVITQ 107


>gi|52424976|ref|YP_088113.1| electron transport complex protein RnfB [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307028|gb|AAU37528.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 196

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP-D 58
           + ++  + CI C  T C++ CPVD        L  + PD C  C +C   CP D IK   
Sbjct: 105 VAFIHEDMCIGC--TKCIQACPVDAIIGTNKSLHTVIPDLCTGCELCVAPCPTDCIKMIK 162

Query: 59  TEPGLELW-LKINSEYATQWPNITTKKESL 87
            E  ++ W  K+N +      N T  ++ L
Sbjct: 163 VEKNIDNWDWKVNPDLVIPVMNTTDGEKKL 192


>gi|114567968|ref|YP_755122.1| ferredoxin-type protein NapH [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338903|gb|ABI69751.1| conserved protein, putative ferredoxin-type protein NapH
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 281

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVD 53
           + +++    I+     C  +CP+  +Y   N      L I P++CIDCG C   CPV+
Sbjct: 181 VLFLILFLSIIYFRPFCRSLCPLGAYYALFNRVSWWRLEIKPEDCIDCGCCSQVCPVE 238


>gi|116625966|ref|YP_828122.1| hydrogenase 2 protein HybA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229128|gb|ABJ87837.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 317

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           V + C+ C    CV+ CP+    +G++  +A + ++CI C  C+  CP +
Sbjct: 115 VKQQCMHCVDPSCVQACPLSALTKGDHGIVAWNGNQCIGCRCCQLSCPFN 164


>gi|328948664|ref|YP_004366001.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema succinifaciens DSM 2489]
 gi|328448988|gb|AEB14704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema succinifaciens DSM 2489]
          Length = 56

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++ +CI C    C   CP +   E  +   I+ D C+ CG C   CPV AI  +
Sbjct: 1  MAYKISSDCINCGA--CEGECPSEAISEVNDKRQINADNCVSCGSCASVCPVGAISEE 56


>gi|324005536|gb|EGB74755.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 162

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREKGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|210615651|ref|ZP_03290697.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
 gi|210150194|gb|EEA81203.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
          Length = 263

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            CI CK   C +VCP D     +N   I P++C +CG+C  +CP
Sbjct: 217 GCIGCKM--CQKVCPSDAIVVEDNIAHIDPEKCTNCGLCAEKCP 258


>gi|169634174|ref|YP_001707910.1| NADH dehydrogenase subunit I [Acinetobacter baumannii SDF]
 gi|169797051|ref|YP_001714844.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AYE]
 gi|184157036|ref|YP_001845375.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ACICU]
 gi|239501287|ref|ZP_04660597.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB900]
 gi|260551026|ref|ZP_05825231.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624]
 gi|260555657|ref|ZP_05827877.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347787|ref|ZP_07228528.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB056]
 gi|301510622|ref|ZP_07235859.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB058]
 gi|301595907|ref|ZP_07240915.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB059]
 gi|332852140|ref|ZP_08433967.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013150]
 gi|332867539|ref|ZP_08437692.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013113]
 gi|332872611|ref|ZP_08440579.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6014059]
 gi|156632697|sp|A3M2Q5|NUOI_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737380|sp|B2HU48|NUOI_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737381|sp|B0VU49|NUOI_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737382|sp|B0V894|NUOI_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|169149978|emb|CAM87872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AYE]
 gi|169152966|emb|CAP02012.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii]
 gi|183208630|gb|ACC56028.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Acinetobacter baumannii ACICU]
 gi|193076541|gb|ABO11199.2| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii ATCC 17978]
 gi|260405974|gb|EEW99461.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624]
 gi|260410568|gb|EEX03866.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|332729512|gb|EGJ60851.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013150]
 gi|332733956|gb|EGJ65101.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013113]
 gi|332739140|gb|EGJ69999.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6014059]
          Length = 180

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  ++  +KE+L
Sbjct: 116 LTPDFELG---------EYVRQ--DLVYEKENL 137


>gi|15678427|ref|NP_275542.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621461|gb|AAB84905.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 341

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           CI CK   C++ CPVD   E +  + +    CI CG C  +CPV
Sbjct: 132 CIRCKK--CMKACPVDAITEKDGRVEVDQGRCIACGECLEKCPV 173


>gi|397906|emb|CAA48368.1| NADH dehydrogenase I, subunit nuoI [Escherichia coli]
          Length = 179

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 57  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 114

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 115 LTPDFEMG 122


>gi|212634995|ref|YP_002311520.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212556479|gb|ACJ28933.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 230

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    CV+VCP    Y+ +  L +   D+CI C  C   CP   I  + +     W 
Sbjct: 53  CNHCSDAACVKVCPTGAMYKDKRGLTLQDNDKCIGCRKCMRACPYGVISYNKQKPHRKWQ 112

Query: 68  KINS--EYATQWPNITTKK 84
              +  E AT  P +  KK
Sbjct: 113 DDQALLEGATASPYMLLKK 131


>gi|152971209|ref|YP_001336318.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895798|ref|YP_002920534.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae NTUH-K2044]
 gi|262043321|ref|ZP_06016450.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330003563|ref|ZP_08304678.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3]
 gi|150956058|gb|ABR78088.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548116|dbj|BAH64467.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039345|gb|EEW40487.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536903|gb|EGF63202.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFELG 123


>gi|219849153|ref|YP_002463586.1| cyclic nucleotide-binding protein [Chloroflexus aggregans DSM 9485]
 gi|219543412|gb|ACL25150.1| cyclic nucleotide-binding protein [Chloroflexus aggregans DSM 9485]
          Length = 477

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V ++C  C    +CVE CP D     +       + C  CG C   CP DA++
Sbjct: 353 VLDSCRQCSVGAECVEACPEDAIERVDTGALRITNRCTGCGECVTACPYDAVQ 405


>gi|91200370|emb|CAJ73416.1| strongly similar to NADH dehydrogenase I chain I [Candidatus
           Kuenenia stuttgartiensis]
          Length = 171

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC                F  I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVGCYL--CAAVCPVDCISLQATEDEYGRRYPEFFRINFSRCIFCGFCEDACPTYAIQ 106

Query: 57  --PDTE 60
             PD E
Sbjct: 107 LVPDFE 112


>gi|294053608|ref|YP_003547266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293612941|gb|ADE53096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 309

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ +   C  C +  CV+VCPV+  + E +  +A+  + CI C  CE  CP  A +
Sbjct: 157 SFYMPVQCQQCDNPPCVDVCPVEATWKEKDGIVAVDYNWCIGCRYCEAACPYHARR 212


>gi|237752866|ref|ZP_04583346.1| ferredoxin [Helicobacter winghamensis ATCC BAA-430]
 gi|229375133|gb|EEO25224.1| ferredoxin [Helicobacter winghamensis ATCC BAA-430]
          Length = 83

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEECIACDA--CREECPNEAIEEGDPYYIIDPERCTECFGFYDEPACLSVCPVDA 58

Query: 55 I--KPDTEPGLE 64
          I   PD    LE
Sbjct: 59 IISDPDNVESLE 70


>gi|262203359|ref|YP_003274567.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262086706|gb|ACY22674.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 111

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDA--IK 56
          +  V+ + CI C    CV  CP + F +G + + +     +C  C +CE  CP DA  + 
Sbjct: 2  IELVLADACIACDK--CVLACPTNVFDQGTDGIPVIARQSDCQTCFMCEAYCPTDALYVS 59

Query: 57 PDTEPGLELW 66
          PD+ P  E +
Sbjct: 60 PDSAPADESF 69


>gi|224418757|ref|ZP_03656763.1| hypothetical protein HcanM9_05713 [Helicobacter canadensis MIT
           98-5491]
 gi|253826716|ref|ZP_04869601.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313142273|ref|ZP_07804466.1| polysulfide reductase chain B [Helicobacter canadensis MIT 98-5491]
 gi|253510122|gb|EES88781.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313131304|gb|EFR48921.1| polysulfide reductase chain B [Helicobacter canadensis MIT 98-5491]
          Length = 189

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  +C +C+HT CV VCP    F + +  + I  ++C+ C  C   CP +A
Sbjct: 55  VRHSCEMCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNA 105


>gi|224367281|ref|YP_002601444.1| Fdx3 [Desulfobacterium autotrophicum HRM2]
 gi|223689997|gb|ACN13280.1| Fdx3 [Desulfobacterium autotrophicum HRM2]
          Length = 179

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C+ + C +VCPV+   +  N + +  + C+ C  C   CP  AI     P L    
Sbjct: 56  QCRHCEDSPCAQVCPVNAIIQKGNHIDVIDELCVGCKSCVLACPFGAISVTERPALGAGF 115

Query: 68  KI 69
           ++
Sbjct: 116 RL 117


>gi|254242172|ref|ZP_04935494.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
 gi|126195550|gb|EAZ59613.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
          Length = 774

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECP 51
           CI C   DC +VCPV        F+    E E  LA +  +CI+CG C   CP
Sbjct: 369 CIRCG--DCAQVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|227329116|ref|ZP_03833140.1| nitrite reductase complex component [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 223

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
            +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  HSCQHCDHAPCVDVCPTGASYRDATNGIVDVNPDLCVGCQYCIAACPYQVRFIHPKTK 147


>gi|217076475|ref|YP_002334191.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
 gi|217036328|gb|ACJ74850.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
          Length = 360

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C LCK   C +VCP       +  + + P++C  CG+CE  CPV AI
Sbjct: 311 EKCTLCKI--CEKVCPYFAITI-DTKVHVDPNKCFGCGLCESRCPVKAI 356


>gi|221135173|ref|ZP_03561476.1| electron transport complex protein RnfB [Glaciecola sp. HTCC2999]
          Length = 193

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREAECIGC--TKCIQACPVDAIIGASKQMHTVIVDECTGCDLCVAPCPVDCI 159


>gi|78042697|ref|YP_360602.1| ferredoxin [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994812|gb|ABB13711.1| ferredoxin [Carboxydothermus hydrogenoformans Z-2901]
          Length = 54

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +TE C+ C    C++ CP +   EG+ +     D C +CG C   CPV AI
Sbjct: 1  MAYRITEECLACG--TCMDSCPHNAIVEGDIYKI--TDACQNCGTCAEACPVGAI 51


>gi|15602588|ref|NP_245660.1| TTRB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721017|gb|AAK02807.1| TtrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ ++ + +  +E CI C  C   CP DA
Sbjct: 98  LCNHCDNPPCVPVCPVQATYQRKDGIVVVDNERCIGCAYCVQACPYDA 145


>gi|150389275|ref|YP_001319324.1| cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens
           QYMF]
 gi|149949137|gb|ABR47665.1| Cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens
           QYMF]
          Length = 286

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 17/89 (19%)

Query: 19  EVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELW------- 66
           ++C  +C ++  NF     + P  C  CGVCE  CPV A+  KP+    L L+       
Sbjct: 73  DLCRENCRFDAINFDDGYHVDPFVCEGCGVCEELCPVGAVSLKPEKAGDLMLYKEDVVFS 132

Query: 67  ---LKINSEYATQWPNITTKKESLPSAAK 92
              LK+ S   T    +T  K+S+ SAA+
Sbjct: 133 RAQLKMGS--GTSGMLVTEVKKSMKSAAE 159


>gi|157156854|ref|YP_001463806.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|157078884|gb|ABV18592.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
          Length = 205

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++ + CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNENLCIGCKLCAVVCPFGAIS 98


>gi|222823215|ref|YP_002574788.1| ferredoxin [Campylobacter lari RM2100]
 gi|222538436|gb|ACM63537.1| ferredoxin [Campylobacter lari RM2100]
          Length = 81

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T  CI C    C E CP +  Y+ +    I PD C +C        C   CPVD 
Sbjct: 1  MSLLITRECISCDA--CREECPDEAIYDNDPIYVIDPDLCTECVNEFSEPACIVACPVDC 58

Query: 55 IKPD---TEPGLELWLK 68
          I PD    E   EL LK
Sbjct: 59 IIPDPDNVESIDELRLK 75


>gi|89109665|ref|AP_003445.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111508|ref|NP_417362.4| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157154983|ref|YP_001464223.1| 4Fe-4S binding protein [Escherichia coli E24377A]
 gi|170018868|ref|YP_001723822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|170680835|ref|YP_001745038.1| 4Fe-4S binding protein [Escherichia coli SMS-3-5]
 gi|193063562|ref|ZP_03044651.1| 4Fe-4S binding protein [Escherichia coli E22]
 gi|194426426|ref|ZP_03058981.1| 4Fe-4S binding protein [Escherichia coli B171]
 gi|218555434|ref|YP_002388347.1| putative oxidoreductase [Escherichia coli IAI1]
 gi|218696481|ref|YP_002404148.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli 55989]
 gi|238902011|ref|YP_002927807.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BW2952]
 gi|256024605|ref|ZP_05438470.1| putative oxidoreductase [Escherichia sp. 4_1_40B]
 gi|260845553|ref|YP_003223331.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|260857008|ref|YP_003230899.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260869562|ref|YP_003235964.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O111:H- str. 11128]
 gi|293449208|ref|ZP_06663629.1| oxidoreductase [Escherichia coli B088]
 gi|300815664|ref|ZP_07095888.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820688|ref|ZP_07100839.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300906566|ref|ZP_07124257.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300947605|ref|ZP_07161777.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300954276|ref|ZP_07166739.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301027818|ref|ZP_07191123.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301303042|ref|ZP_07209169.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301327285|ref|ZP_07220541.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|301643766|ref|ZP_07243804.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307139572|ref|ZP_07498928.1| putative oxidoreductase [Escherichia coli H736]
 gi|307310496|ref|ZP_07590144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331669619|ref|ZP_08370465.1| putative electron transport protein YgfS [Escherichia coli TA271]
 gi|331684510|ref|ZP_08385102.1| putative electron transport protein YgfS [Escherichia coli H299]
 gi|6920085|sp|Q46819|YGFS_ECOLI RecName: Full=Putative electron transport protein ygfS
 gi|85675698|dbj|BAE76951.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K12 substr. W3110]
 gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157077013|gb|ABV16721.1| 4Fe-4S binding protein [Escherichia coli E24377A]
 gi|169753796|gb|ACA76495.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|170518553|gb|ACB16731.1| 4Fe-4S binding protein [Escherichia coli SMS-3-5]
 gi|192930839|gb|EDV83444.1| 4Fe-4S binding protein [Escherichia coli E22]
 gi|194415734|gb|EDX32001.1| 4Fe-4S binding protein [Escherichia coli B171]
 gi|218353213|emb|CAU99126.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli 55989]
 gi|218362202|emb|CAQ99820.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli IAI1]
 gi|238862761|gb|ACR64759.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BW2952]
 gi|257755657|dbj|BAI27159.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257760700|dbj|BAI32197.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|257765918|dbj|BAI37413.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O111:H- str. 11128]
 gi|291322298|gb|EFE61727.1| oxidoreductase [Escherichia coli B088]
 gi|299879080|gb|EFI87291.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300318737|gb|EFJ68521.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300401605|gb|EFJ85143.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300452802|gb|EFK16422.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300526952|gb|EFK48021.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531593|gb|EFK52655.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300841706|gb|EFK69466.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|300846148|gb|EFK73908.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|301077865|gb|EFK92671.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|306909391|gb|EFN39886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309703246|emb|CBJ02581.1| putative oxidoreductase, 4Fe-4S subunit [Escherichia coli ETEC
           H10407]
 gi|315062189|gb|ADT76516.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli W]
 gi|315256767|gb|EFU36735.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|315614960|gb|EFU95598.1| hydrogenase-4 component A [Escherichia coli 3431]
 gi|320202544|gb|EFW77114.1| putative oxidoreductase, Fe-S subunit [Escherichia coli EC4100B]
 gi|323154765|gb|EFZ40963.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323162525|gb|EFZ48375.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323167911|gb|EFZ53601.1| hydrogenase-4 component A [Shigella sonnei 53G]
 gi|323173882|gb|EFZ59511.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323180328|gb|EFZ65880.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323183438|gb|EFZ68835.1| hydrogenase-4 component A [Escherichia coli 1357]
 gi|323377227|gb|ADX49495.1| putative oxidoreductase, Fe-S subunit [Escherichia coli KO11]
 gi|323935883|gb|EGB32182.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941594|gb|EGB37774.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323946629|gb|EGB42652.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324119926|gb|EGC13805.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|331063287|gb|EGI35200.1| putative electron transport protein YgfS [Escherichia coli TA271]
 gi|331078125|gb|EGI49331.1| putative electron transport protein YgfS [Escherichia coli H299]
          Length = 162

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|74313444|ref|YP_311863.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|209920340|ref|YP_002294424.1| putative oxidoreductase [Escherichia coli SE11]
 gi|254037929|ref|ZP_04871987.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331643574|ref|ZP_08344705.1| putative electron transport protein YgfS [Escherichia coli H736]
 gi|331678870|ref|ZP_08379544.1| putative electron transport protein YgfS [Escherichia coli H591]
 gi|887836|gb|AAA83067.1| ORF_f163 [Escherichia coli]
 gi|73856921|gb|AAZ89628.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|209913599|dbj|BAG78673.1| putative oxidoreductase [Escherichia coli SE11]
 gi|226839553|gb|EEH71574.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331037045|gb|EGI09269.1| putative electron transport protein YgfS [Escherichia coli H736]
 gi|331073700|gb|EGI45021.1| putative electron transport protein YgfS [Escherichia coli H591]
          Length = 163

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 109


>gi|315126995|ref|YP_004068998.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
 gi|315015509|gb|ADT68847.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
          Length = 184

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|294338873|emb|CAZ87210.1| BoxA (Benzoyl-CoA oxygenase component A) [Thiomonas sp. 3As]
          Length = 424

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV       N   +  D+C  C  C P CP  AI
Sbjct: 17 EICIRC--NTCEATCPVGAITHDANNYVVDADKCNFCMACVPPCPTGAI 63


>gi|224371828|ref|YP_002605992.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2]
 gi|223694545|gb|ACN17828.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2]
          Length = 544

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 30/83 (36%)

Query: 7   ENCILCKHTDCVEVCPV---------------------------DCFYEGENFLAIHPDE 39
           + C LC    C  VCPV                           D FY  +    I  + 
Sbjct: 26  DRCTLCGQ--CTAVCPVQAIELAVFRKRNLVTSIHRVEDNRSTFDTFYGIKQKTTI-AEA 82

Query: 40  CIDCGVCEPECPVDAIKPDTEPG 62
           CI C +C   CP DAI+P+  PG
Sbjct: 83  CIGCAMCSMVCPNDAIEPNPHPG 105


>gi|197123586|ref|YP_002135537.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196173435|gb|ACG74408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 273

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           ++ V + C  C+ T C++VCPV   Y   +  + +  + CI C  C   CP  +  + P+
Sbjct: 139 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGVVLVDGERCIGCAYCVQACPFGSRFLSPE 198

Query: 59  TE 60
           T 
Sbjct: 199 TH 200


>gi|118591778|ref|ZP_01549174.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
 gi|118435771|gb|EAV42416.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
          Length = 654

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C LC    CV +CP     E  +   L    D C+ CG+C   CP  A+  D  P L+L
Sbjct: 506 CTLC--LSCVSLCPSGALKENPDAPQLRFQEDACLQCGICTTICPEKALSLD--PRLDL 560



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           LC H        T C+++CP        + +++    C  CG C   CP  AI  D  P 
Sbjct: 271 LCAHSRARKTGCTRCLDLCPTGAITPDGDHVSVDTMVCAGCGSCSAVCPSGAISYDAPPV 330

Query: 63  LELWLKINSEYATQWPNITTKKESL 87
              + ++ +  AT W  +++    L
Sbjct: 331 SNTFQRLQTLAAT-WRKLSSDSPRL 354


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 17  CVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CV+VCPV     GE      AI    CI CG C  +CPV  I  + E
Sbjct: 800 CVKVCPVKAI-SGEIRKTPFAIDAKLCIACGACAQKCPVHVIAQEGE 845


>gi|78185994|ref|YP_374037.1| hypothetical protein Plut_0104 [Chlorobium luteolum DSM 273]
 gi|78165896|gb|ABB22994.1| hypothetical protein Plut_0104 [Chlorobium luteolum DSM 273]
          Length = 83

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/20 (75%), Positives = 16/20 (80%)

Query: 38 DECIDCGVCEPECPVDAIKP 57
          D CI CG CEPECPV+AI P
Sbjct: 28 DTCIMCGACEPECPVNAISP 47


>gi|46200681|ref|ZP_00207795.1| COG0369: Sulfite reductase, alpha subunit (flavoprotein)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 393

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 9  CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CPVD   ++G N++ +  D+C  C  C   CP  AI
Sbjct: 14 CIRC--NTCEEACPVDAITHDGTNYV-VSFDKCTGCRTCVSPCPTGAI 58


>gi|331696235|ref|YP_004332474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950924|gb|AEA24621.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 286

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C H  C++VCP       E+  + +  D C  CG C P CP   I  D  PG
Sbjct: 105 SDVCKHCTHAACLDVCPTGSLIRTEHGTVLVQEDICNGCGYCIPACPYGVI--DQRPG 160


>gi|307353080|ref|YP_003894131.1| FAD dependent oxidoreductase [Methanoplanus petrolearius DSM 11571]
 gi|307156313|gb|ADN35693.1| FAD dependent oxidoreductase [Methanoplanus petrolearius DSM 11571]
          Length = 428

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 20/76 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH------------------PDECIDCG 44
           YV  E C  C   DC EVCPV+ +   +  L +                   P+ CIDCG
Sbjct: 98  YVDAELCNGC--GDCYEVCPVEVYNRYDAGLGVRKAIYKPHAQIVPNLAIRDPEHCIDCG 155

Query: 45  VCEPECPVDAIKPDTE 60
           +C   C  +A++ D E
Sbjct: 156 LCYDVCGREAVRHDDE 171


>gi|300717644|ref|YP_003742447.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661]
 gi|299063480|emb|CAX60600.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|222625883|gb|EEE60015.1| hypothetical protein OsJ_12764 [Oryza sativa Japonica Group]
          Length = 815

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 714 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 770


>gi|304314560|ref|YP_003849707.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
 gi|5734542|emb|CAB52771.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588019|gb|ADL58394.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
          Length = 340

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           CI C+   C++ CPVD   E +  + I    CI CG C  +CPV
Sbjct: 132 CIRCRK--CMKACPVDAIVEEDGRVEIDQSRCIACGDCLEKCPV 173


>gi|50083956|ref|YP_045466.1| NADH dehydrogenase subunit I [Acinetobacter sp. ADP1]
 gi|81393674|sp|Q6FE64|NUOI_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49529932|emb|CAG67644.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter sp. ADP1]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  ++  +KE+L
Sbjct: 116 MTPDFELG---------EYVRQ--DLVYEKENL 137


>gi|327400634|ref|YP_004341473.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316142|gb|AEA46758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 243

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V + C  C++  CV VCPV   Y  ++  + +  ++CI CG C   CP  A     E 
Sbjct: 109 YFVPKLCNQCENAPCVAVCPVGATYMTDDGVVLVDYEKCIGCGYCVSACPYGARYLYPED 168

Query: 62  GLELWLK 68
           G   +++
Sbjct: 169 GESEYMR 175


>gi|303327686|ref|ZP_07358126.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
          3_1_syn3]
 gi|302862047|gb|EFL84981.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
          3_1_syn3]
          Length = 418

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C E CP    Y   G      +P+ CI+CG C   CP  A+
Sbjct: 30 VDAEKCIGCD--TCQEYCPSGAIYGETGAAHEVAYPEACINCGQCLTHCPEFAV 81


>gi|292494297|ref|YP_003533440.1| molybdopterin oxidoreductase [Haloferax volcanii DS2]
 gi|291369264|gb|ADE01494.1| molybdopterin oxidoreductase [Haloferax volcanii DS2]
          Length = 273

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           M+Y  T  C  C +  CV+VCPV+  Y  E+  + I  D+CI C  C   CP +A
Sbjct: 64  MSYQPTA-CQHCDNAPCVKVCPVNATYTREDGIVEIDYDKCIGCRYCMAACPYNA 117


>gi|289191767|ref|YP_003457708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938217|gb|ADC68972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 163

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 17 CVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
          C+E+CPVD     ++  F+ I  ++C+ CG C+  CP +AI
Sbjct: 45 CIEICPVDAITYSKDGLFIVIDKEKCVFCGRCKKVCPTNAI 85


>gi|323966686|gb|EGB62118.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251647|gb|EGE63333.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 594

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +TY +V E C  C  T C   CPV+    E      I PD C+ CG+C   C  +AI
Sbjct: 537 ITYEIVPETCTGC--TVCARNCPVNAITGERRQPHKIDPDICVRCGICMQVCNFNAI 591


>gi|331660380|ref|ZP_08361315.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
 gi|331052647|gb|EGI24683.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|269963964|ref|ZP_06178273.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           harveyi 1DA3]
 gi|269831307|gb|EEZ85457.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           harveyi 1DA3]
          Length = 249

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 162


>gi|222873278|gb|EEF10409.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK------PDTEP 61
           CI C  T C++ CP D       F+  +    C  C +C P CPVD I+      P T  
Sbjct: 92  CIGC--TLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCIELHNASGPAT-- 147

Query: 62  GLELWLKINSEYATQ 76
           G   W    +E+A Q
Sbjct: 148 GWSAWSPQQAEHARQ 162


>gi|254173494|ref|ZP_04880166.1| RNase L inhibitor [Thermococcus sp. AM4]
 gi|214032186|gb|EEB73016.1| RNase L inhibitor [Thermococcus sp. AM4]
          Length = 589

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+   I    C  CG+C  +CP +AI
Sbjct: 16 CGHFLCERVCPVNRMGGEAIIIDEENYRPVIQEASCTGCGICVHKCPFNAI 66


>gi|150400807|ref|YP_001324573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150013510|gb|ABR55961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 250

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPGLELW 66
           E ++ I PD+CI C +C  ECPVDAI KP      E+ 
Sbjct: 36 SEKYICIVPDDCIRCNLCYIECPVDAITKPTVRKPAEII 74


>gi|332999463|gb|EGK19048.1| formate hydrogenlyase subunit 6 [Shigella flexneri VA-6]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLKIN 70
             L +W K N
Sbjct: 96  YELAVWKKEN 105


>gi|332998146|gb|EGK17750.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           VA-6]
          Length = 223

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C+H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCEHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|325661153|ref|ZP_08149780.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472660|gb|EGC75871.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 263

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +  V +  CI C+   C +VCP D      N   I P++C +CG C  +CP
Sbjct: 210 VMAVCSTGCIGCRM--CQKVCPADAIVVENNLAWIDPEKCTNCGACAEKCP 258


>gi|315925914|ref|ZP_07922119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620735|gb|EFV00711.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 222

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + V E CI C+  +C  VCP  C         I  + C+ CG C   CPV  I+
Sbjct: 148 FFVGEGCIGCR--NCSVVCPQSCIDSSSIPAVIDQNRCLHCGRCAEACPVGVIE 199


>gi|269967076|ref|ZP_06181144.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           alginolyticus 40B]
 gi|269828335|gb|EEZ82601.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           alginolyticus 40B]
          Length = 249

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 162


>gi|157962175|ref|YP_001502209.1| electron transport complex protein RnfB [Shewanella pealeana ATCC
           700345]
 gi|189043389|sp|A8H537|RNFB_SHEPA RecName: Full=Electron transport complex protein rnfB
 gi|157847175|gb|ABV87674.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|332140733|ref|YP_004426471.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550755|gb|AEA97473.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 193

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 110 VAFIREDECIGC--TKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCI 163


>gi|113474436|ref|YP_720497.1| 4Fe-4S ferredoxin, iron-sulfur binding [Trichodesmium erythraeum
          IMS101]
 gi|110165484|gb|ABG50024.1| 4Fe-4S ferredoxin, iron-sulfur binding [Trichodesmium erythraeum
          IMS101]
          Length = 75

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 15 TDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           DC   CPV C +       +G ++  +  D CIDCG+C   CPV+ A+  +  P L+
Sbjct: 14 ADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVEKAVLAEERPELQ 71


>gi|315425450|dbj|BAJ47114.1| ABC transporter ATP-binding protein [Candidatus Caldiarchaeum
          subterraneum]
          Length = 595

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 12 CKHTDCVEVCP-----VDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
          C +  C+  CP     ++    GE+ F  I    CI CG+C  +CP +AI
Sbjct: 20 CGNWPCITYCPPVRNNIEAIKMGEDGFPIISETLCISCGICVKKCPFEAI 69


>gi|264676201|ref|YP_003276107.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni CNB-2]
 gi|262206713|gb|ACY30811.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni CNB-2]
          Length = 433

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPVDAI  D
Sbjct: 17 IDPEICIRCNTCEATCPVDAITHD 40



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I
Sbjct: 20 EICIRC--NTCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSI 66


>gi|196232899|ref|ZP_03131749.1| molybdopterin oxidoreductase [Chthoniobacter flavus Ellin428]
 gi|196223098|gb|EDY17618.1| molybdopterin oxidoreductase [Chthoniobacter flavus Ellin428]
          Length = 1259

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIH-PDECIDCGVCEPECPVD 53
           VT  C  C    C+E CPV  +  + E  +  H  D+CI C  C  +CP D
Sbjct: 112 VTTACHHCVEPACLEGCPVMAYDKDAETGIVRHLDDQCIGCQYCILKCPYD 162


>gi|158520140|ref|YP_001528010.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158508966|gb|ABW65933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 325

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M  V  E C  C   DCV  CPV      E+ + I    C+ CG+C  +CP +A++   D
Sbjct: 205 MPVVKKEACKKC--MDCVNRCPVKAISHQEDTITIDMGLCLGCGICTEKCPHEAMELVVD 262

Query: 59  TE 60
           TE
Sbjct: 263 TE 264


>gi|118474172|ref|YP_891448.1| ferredoxin [Campylobacter fetus subsp. fetus 82-40]
 gi|118413398|gb|ABK81818.1| ferredoxin [Campylobacter fetus subsp. fetus 82-40]
          Length = 83

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C E CP +  YE +    I PD C +C        C   CPVD 
Sbjct: 1  MSLMITKDCISCDA--CREECPDEAIYEDDPTYMIDPDRCSECISDYAEPACIVICPVDC 58

Query: 55 IKPD---TEPGLELWLK 68
          I PD    E   EL LK
Sbjct: 59 IVPDPDNIETPEELKLK 75


>gi|121607275|ref|YP_995082.1| RnfABCDGE type electron transport complex subunit B
           [Verminephrobacter eiseniae EF01-2]
 gi|121551915|gb|ABM56064.1| electron transport complex, RnfABCDGE type, B subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 220

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + ++  + CI C  T C++VCP D        +  I    C  C +C P CPVD I  DT
Sbjct: 85  VAFIDEDWCIGC--TLCLKVCPTDAIVGASKMMHTIIERYCTGCELCLPVCPVDCIALDT 142

Query: 60  EPG 62
             G
Sbjct: 143 ASG 145


>gi|332097983|gb|EGJ02956.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 155-74]
          Length = 184

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|49081734|gb|AAT50267.1| PA2644 [synthetic construct]
          Length = 183

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 118 LTPDFEMG 125


>gi|66047114|ref|YP_236955.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257821|gb|AAY38917.1| Electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
          Length = 291

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  +EC  C +C   CPVD I+
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGAAKLMHTVIINECTGCDLCIAPCPVDCIE 137


>gi|57642012|ref|YP_184490.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160336|dbj|BAD86266.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 166

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
          NC  C+   C+EVCP +  Y +G+  + + P +CI C +C   CP
Sbjct: 47 NCRHCEKAPCLEVCPTNALYRDGDGAVLLAPQKCIGCLMCGIVCP 91


>gi|238919824|ref|YP_002933339.1| glutamate synthase family, small subunit, [Edwardsiella ictaluri
           93-146]
 gi|238869393|gb|ACR69104.1| glutamate synthase family, small subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 678

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +LC+H +   C  VCP     +  + + +  ++CI C  C   CP  AI+  T+
Sbjct: 54  LLCRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAIEVITQ 107


>gi|160899056|ref|YP_001564638.1| RnfABCDGE type electron transport complex subunit B [Delftia
           acidovorans SPH-1]
 gi|160364640|gb|ABX36253.1| electron transport complex, RnfABCDGE type, B subunit [Delftia
           acidovorans SPH-1]
          Length = 238

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK------PDTEP 61
           CI C  T C++ CP D       F+  +    C  C +C P CPVD I+      P T  
Sbjct: 92  CIGC--TLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCIELHNASGPAT-- 147

Query: 62  GLELWLKINSEYATQ 76
           G   W    +E+A Q
Sbjct: 148 GWSAWSPQQAEHARQ 162


>gi|121594763|ref|YP_986659.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222110623|ref|YP_002552887.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120606843|gb|ABM42583.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221730067|gb|ACM32887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 260

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 115 LCNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDA 162


>gi|86159508|ref|YP_466293.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776019|gb|ABC82856.1| tetrathionate reductase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 274

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           ++ V + C  C+ T C++VCPV   Y   +  + +  + CI C  C   CP  +  + P+
Sbjct: 140 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGVVLVDGERCIGCAYCVQACPFGSRFLSPE 199

Query: 59  TE 60
           T 
Sbjct: 200 TH 201


>gi|333006115|gb|EGK25625.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-272]
 gi|333018950|gb|EGK38243.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-227]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|331654382|ref|ZP_08355382.1| putative electron transport protein YgfS [Escherichia coli M718]
 gi|331047764|gb|EGI19841.1| putative electron transport protein YgfS [Escherichia coli M718]
          Length = 163

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 115

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 116 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 162


>gi|299531136|ref|ZP_07044548.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni S44]
 gi|298720839|gb|EFI61784.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni S44]
          Length = 433

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPVDAI  D
Sbjct: 17 IDPEICIRCNTCEATCPVDAITHD 40



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I
Sbjct: 20 EICIRC--NTCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSI 66


>gi|299532215|ref|ZP_07045609.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
 gi|298719877|gb|EFI60840.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
          Length = 250

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 104 LCNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDA 151


>gi|294140408|ref|YP_003556386.1| NADH dehydrogenase I subunit I [Shewanella violacea DSS12]
 gi|293326877|dbj|BAJ01608.1| NADH dehydrogenase I, I subunit [Shewanella violacea DSS12]
          Length = 184

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 16/67 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF-----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C   CPVDC            +E + F  I+   CI CG CE  CP  AI
Sbjct: 62  ERCVACNL--CSVACPVDCISVEKTEKPDGRWEAKTF-TINFSRCIMCGFCEEACPTHAI 118

Query: 56  K--PDTE 60
           +  PD E
Sbjct: 119 QLTPDFE 125


>gi|255322208|ref|ZP_05363354.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           showae RM3277]
 gi|255300581|gb|EET79852.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           showae RM3277]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCP    Y+  N  + ++  ECI C +C   CP  A
Sbjct: 95  CNHCENPACIDVCPTGASYQRSNGIVKVNSAECIGCALCAEACPYHA 141


>gi|161502534|ref|YP_001569646.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863881|gb|ABX20504.1| hypothetical protein SARI_00578 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|323130652|gb|ADX18082.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628528|gb|EGE34871.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 190

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 68  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 125

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 126 LTPDFELG 133


>gi|11498235|ref|NP_069461.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649992|gb|AAB90612.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 340

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           P++   E   +LA +  D CI CGVCE  CP +AI
Sbjct: 265 PIESLLEKSRYLAYVDEDMCIACGVCEERCPFEAI 299


>gi|84385415|ref|ZP_00988447.1| tetrathionate reductase, subunit B [Vibrio splendidus 12B01]
 gi|84380012|gb|EAP96863.1| tetrathionate reductase, subunit B [Vibrio splendidus 12B01]
          Length = 278

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   C++VCPV   ++ E+ + +  +E C+ C  C   CP DA
Sbjct: 111 LCNHCDNAPCIKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDA 158


>gi|238798700|ref|ZP_04642173.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia mollaretii
           ATCC 43969]
 gi|238717457|gb|EEQ09300.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia mollaretii
           ATCC 43969]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++  C  C    CV  CP    ++ E    + ++PD C+ C  CE  CP  A + D
Sbjct: 58  FNYYLSIACNHCSFPTCVTGCPTGAMHKREEDGLVVVNPDLCVGCRYCEMRCPYGAPQFD 117

Query: 59  TEPGL 63
            +  L
Sbjct: 118 AKTKL 122


>gi|15597840|ref|NP_251334.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAO1]
 gi|107102164|ref|ZP_01366082.1| hypothetical protein PaerPA_01003214 [Pseudomonas aeruginosa PACS2]
 gi|116050631|ref|YP_790550.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984090|ref|YP_001347926.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PA7]
 gi|218891195|ref|YP_002440061.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa LESB58]
 gi|254235626|ref|ZP_04928949.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719]
 gi|254241074|ref|ZP_04934396.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192]
 gi|296388895|ref|ZP_06878370.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAb1]
 gi|313107683|ref|ZP_07793865.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016]
 gi|81783693|sp|Q9I0J4|NUOI_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122259754|sp|Q02ND6|NUOI_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918795|sp|A6V4E1|NUOI_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737408|sp|B7VAQ8|NUOI_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|9948713|gb|AAG06032.1|AE004693_3 NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PAO1]
 gi|115585852|gb|ABJ11867.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167557|gb|EAZ53068.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719]
 gi|126194452|gb|EAZ58515.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192]
 gi|150959248|gb|ABR81273.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PA7]
 gi|218771420|emb|CAW27187.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa LESB58]
 gi|310880367|gb|EFQ38961.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 118 LTPDFEMG 125


>gi|304382390|ref|ZP_07364890.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336452|gb|EFM02688.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 259

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C    C  VCP+      +GE  +  H D+CI C  C   CPV AI
Sbjct: 190 VNNERCIRCGR--CATVCPMQNITGGKGEKPIWHHTDDCISCFACYHGCPVHAI 241


>gi|302348066|ref|YP_003815704.1| Ferredoxin like protein [Acidilobus saccharovorans 345-15]
 gi|302328478|gb|ADL18673.1| Ferredoxin like protein [Acidilobus saccharovorans 345-15]
          Length = 101

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C+ +CP  C+    + +    + C++CG C   CP+DAI
Sbjct: 38 KCEKCPAKPCIYLCPAGCYTLAGDRIVFSYEGCVECGTCRVICPMDAI 85


>gi|260768415|ref|ZP_05877349.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
 gi|260616445|gb|EEX41630.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
          Length = 553

 Score = 35.4 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP +A+
Sbjct: 417 TTDCTLC--MSCVAVCPTRALHHEGDLPSLKFVEQDCVQCGLCVKACPENAL 466


>gi|261821988|ref|YP_003260094.1| cytochrome C nitrite reductase, Fe-S protein [Pectobacterium
           wasabiae WPP163]
 gi|261606001|gb|ACX88487.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           wasabiae WPP163]
          Length = 223

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYQVRFIHPQTK 147


>gi|119873466|ref|YP_931473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674874|gb|ABL89130.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 285

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL---ELWLKINSEY 73
           CV+ CP    Y    ++   P  C+ CGVC   CP         P +   E  + IN   
Sbjct: 23  CVDACPAGALYVDGRWVKAEPSLCVGCGVCMSACPTGVFTAQLGPYISCREGGVCINGLR 82

Query: 74  ATQWPNITTKKESLPSAAKMD 94
           A  +  +  K   +   A+ D
Sbjct: 83  AEDYVKLVEKYGEITVDARCD 103


>gi|34498747|ref|NP_902962.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104598|gb|AAQ60956.1| Electron transport complex protein [Chromobacterium violaceum ATCC
           12472]
          Length = 257

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  +  ++CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 78  LAVIREDSCIGC--TLCIQACPVDAIVGAAKQMHTVIADECTGCELCLAPCPVDCI 131


>gi|15679814|ref|NP_276932.1| hypothetical protein MTH1826 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622960|gb|AAB86292.1| unknown (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 367

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+T +C LC    CVE CPV+     E+ + I  DECI C  C   CP +    + E  +
Sbjct: 189 VITGDCNLCGV--CVEDCPVEAITLTEDGVKIEYDECIACMNCMDSCPNEVYDLNWEDDV 246

Query: 64  ELWLKINSEYA 74
             +++   EY+
Sbjct: 247 PAFIERMMEYS 257


>gi|331085092|ref|ZP_08334178.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407875|gb|EGG87365.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 263

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +  V +  CI C+   C +VCP D      N   I P++C +CG C  +CP
Sbjct: 210 VMAVCSTGCIGCRM--CQKVCPADAIVVENNLAWIDPEKCTNCGACAEKCP 258


>gi|323978273|gb|EGB73359.1| dimethylsulfoxide reductase [Escherichia coli TW10509]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|182419411|ref|ZP_02950663.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237666562|ref|ZP_04526547.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376742|gb|EDT74314.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237657761|gb|EEP55316.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 495

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C  VC             I   +C +CG+C+  CP DAI  D  P
Sbjct: 104 FEVTDACRNCIAHKCQSVCNFGAISYVNGRAHIDTTKCKECGMCKKACPYDAIAQDMRP 162


>gi|157163871|ref|YP_001467642.1| ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
           [Campylobacter concisus 13826]
 gi|157101373|gb|ABV23503.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter concisus 13826]
          Length = 183

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           +T +C  C    C++VCPV  + + EN +   +H D+CI CG C   CP  +I
Sbjct: 55  ITHSCHHCDEPACMDVCPVGAYIKLENGVVQPLH-DKCIGCGYCLMACPYGSI 106


>gi|82777863|ref|YP_404212.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
 gi|81242011|gb|ABB62721.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|329898086|ref|ZP_08272295.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
 gi|328920958|gb|EGG28383.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
          Length = 198

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 112 VAYIHEDECIGC--TKCIQACPVDAILGAAKLMHTVIASECTGCDLCVEPCPVDCI 165


>gi|326562847|gb|EGE13135.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 103P14B1]
 gi|326577018|gb|EGE26913.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 101P30B1]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   C+ CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQ 117

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 118 LTPDFELG---------EYDRQ--NLVYEKEHL 139


>gi|320656571|gb|EFX24467.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|299143765|ref|ZP_07036845.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518250|gb|EFI41989.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 316

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI CK   C + CP D  +  +N   I   +CI+CG+C  +CP  AI
Sbjct: 216 GCIACKL--CEKNCPKDAIHVVDNLARIDYTKCINCGICVSKCPTGAI 261


>gi|291284206|ref|YP_003501024.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. CB9615]
 gi|293416139|ref|ZP_06658779.1| electron transporter ygfS [Escherichia coli B185]
 gi|290764079|gb|ADD58040.1| Putative electron transport protein ygfS [Escherichia coli O55:H7
           str. CB9615]
 gi|291432328|gb|EFF05310.1| electron transporter ygfS [Escherichia coli B185]
 gi|320662090|gb|EFX29491.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|222444427|ref|ZP_03606942.1| hypothetical protein METSMIALI_00038 [Methanobrevibacter smithii
           DSM 2375]
 gi|261351023|ref|ZP_05976440.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|222433992|gb|EEE41157.1| hypothetical protein METSMIALI_00038 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860363|gb|EFC92661.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 456

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIK 56
           GE +  I+PD C+ CG C   CP DAIK
Sbjct: 121 GEAYSVINPDTCVRCGYCFRVCPTDAIK 148


>gi|204930526|ref|ZP_03221456.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204320460|gb|EDZ05663.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 185

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 57  CNHCEHPACVAACPVEAYTKCEDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|218778463|ref|YP_002429781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759847|gb|ACL02313.1| Sulfite reduction-associated complex , DsrO [Desulfatibacillum
           alkenivorans AK-01]
          Length = 271

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 5   VTENCIL-----CKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPD 58
           VT+N +L     C++  CV VCP    ++ E+ + I     CI C  C   CP  +   +
Sbjct: 124 VTQNEVLVLCNQCENPACVRVCPTKATFQREDGIVIMDFHRCIGCRFCMAACPYGSRSFN 183

Query: 59  TEPGLELWLKINSEYATQWPNITTK 83
            +      L+IN E+ T+   +  K
Sbjct: 184 FKDPRIASLEINPEFPTRMKGVVEK 208


>gi|145591167|ref|YP_001153169.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282935|gb|ABP50517.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 188

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++   C  C++  CV VCP    Y+  +  + I P+ CI C  C   CP +A   D   G
Sbjct: 58  LLLVQCQHCENAPCVIVCPTGASYKDVDGLVKIKPELCIGCKYCMVACPYEARWLDERTG 117

Query: 63  L 63
           L
Sbjct: 118 L 118


>gi|118466276|ref|YP_879707.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium avium 104]
 gi|118167563|gb|ABK68460.1| 4Fe-4S binding domain protein [Mycobacterium avium 104]
          Length = 330

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   ++      
Sbjct: 131 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPFGVVE------ 184

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + +  YAT       ++   PS   + GV QK
Sbjct: 185 ----RRNDGTYATP-----AQRPDRPSEEIVTGVAQK 212


>gi|41406467|ref|NP_959303.1| hypothetical protein MAP0369 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394816|gb|AAS02686.1| hypothetical protein MAP_0369 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 324

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   ++      
Sbjct: 125 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPFGVVE------ 178

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + +  YAT       ++   PS   + GV QK
Sbjct: 179 ----RRNDGTYATP-----AQRPDRPSEEIVTGVAQK 206


>gi|157162346|ref|YP_001459664.1| 4Fe-4S binding protein [Escherichia coli HS]
 gi|188491838|ref|ZP_02999108.1| 4Fe-4S binding protein [Escherichia coli 53638]
 gi|194436779|ref|ZP_03068879.1| 4Fe-4S binding protein [Escherichia coli 101-1]
 gi|253772274|ref|YP_003035105.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|293412244|ref|ZP_06654967.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|297516963|ref|ZP_06935349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli OP50]
 gi|300925135|ref|ZP_07141049.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|312972874|ref|ZP_07787047.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|157068026|gb|ABV07281.1| 4Fe-4S binding protein [Escherichia coli HS]
 gi|188487037|gb|EDU62140.1| 4Fe-4S binding protein [Escherichia coli 53638]
 gi|194424261|gb|EDX40248.1| 4Fe-4S binding protein [Escherichia coli 101-1]
 gi|242378418|emb|CAQ33197.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BL21(DE3)]
 gi|253323318|gb|ACT27920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|291469015|gb|EFF11506.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|300418737|gb|EFK02048.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|310332816|gb|EFQ00030.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|323960818|gb|EGB56439.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971677|gb|EGB66906.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|332344780|gb|AEE58114.1| hydrogenase-4 component A [Escherichia coli UMNK88]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|193070563|ref|ZP_03051502.1| 4Fe-4S binding protein [Escherichia coli E110019]
 gi|192956146|gb|EDV86610.1| 4Fe-4S binding protein [Escherichia coli E110019]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|260598698|ref|YP_003211269.1| NADH dehydrogenase subunit I [Cronobacter turicensis z3032]
 gi|260217875|emb|CBA32420.1| NADH-quinone oxidoreductase subunit I [Cronobacter turicensis
           z3032]
          Length = 211

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 89  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 146

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 147 LTPDFELG 154


>gi|262203451|ref|YP_003274659.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262086798|gb|ACY22766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 333

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ C  C H  C++VCP    +  E   + I  D C  CG C   CP   ++
Sbjct: 130 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVIQDDVCNGCGTCVAGCPFGVVE 183


>gi|153001066|ref|YP_001366747.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151365684|gb|ABS08684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 181

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C+ C++  C+ VCP   ++   +  + +  ++C  CG+C   CP DA+    + G
Sbjct: 57  LSHACMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYDAVSIREDDG 115


>gi|305665378|ref|YP_003861665.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
 gi|88710133|gb|EAR02365.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
          Length = 373

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +   C  C +  CV+VCPV   + E +  + I  D C+ C  C   CP D  +
Sbjct: 223 FYMGTQCFHCDNPPCVDVCPVQATWREDDGLVVIDYDWCVGCRYCMAACPYDGRR 277


>gi|110643034|ref|YP_670764.1| putative electron transport protein YgfS [Escherichia coli 536]
 gi|191173216|ref|ZP_03034747.1| 4Fe-4S binding protein [Escherichia coli F11]
 gi|300995684|ref|ZP_07181212.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|331659014|ref|ZP_08359956.1| putative electron transport protein YgfS [Escherichia coli TA206]
 gi|110344626|gb|ABG70863.1| putative electron transport protein YgfS [Escherichia coli 536]
 gi|190906467|gb|EDV66075.1| 4Fe-4S binding protein [Escherichia coli F11]
 gi|300304792|gb|EFJ59312.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|315295672|gb|EFU54992.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|324011766|gb|EGB80985.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
 gi|331053596|gb|EGI25625.1| putative electron transport protein YgfS [Escherichia coli TA206]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|308050140|ref|YP_003913706.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307632330|gb|ADN76632.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 211

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++  C  C    CVE+CP    ++   +  + +  ++CI C +C   CP DA + D
Sbjct: 62  FAYYMSIGCNHCSKPPCVEICPTGAMHKRAKDGIVRVDTEQCIGCEMCAEMCPYDAPQYD 121

Query: 59  TEPG 62
              G
Sbjct: 122 KAKG 125


>gi|293415744|ref|ZP_06658387.1| hydrogenase-4 component A [Escherichia coli B185]
 gi|291433392|gb|EFF06371.1| hydrogenase-4 component A [Escherichia coli B185]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|212223876|ref|YP_002307112.1| putative ATPase RIL [Thermococcus onnurineus NA1]
 gi|212008833|gb|ACJ16215.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 591

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP +AI
Sbjct: 16 CGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 66


>gi|167747724|ref|ZP_02419851.1| hypothetical protein ANACAC_02445 [Anaerostipes caccae DSM 14662]
 gi|167653086|gb|EDR97215.1| hypothetical protein ANACAC_02445 [Anaerostipes caccae DSM 14662]
          Length = 525

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 15/76 (19%)

Query: 17  CVEVCPVDCFYEGENFL---AIHPD-ECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           C + CP  C   GEN     A+ PD +CI CG+C   C   AI             +N +
Sbjct: 405 CQDACPKKCIKIGENITSLPAVDPDAQCIGCGMCVAACSGQAI-----------FLVNEQ 453

Query: 73  YATQWPNITTKKESLP 88
           +   + ++T   E LP
Sbjct: 454 FEKDYASVTLPYEFLP 469


>gi|159905431|ref|YP_001549093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886924|gb|ABX01861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 481

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 12/63 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           VTENCILC   +C+  CP D   E   F  +   E         CI+CG+C  +CP +A+
Sbjct: 225 VTENCILC--GNCITKCPKD-VLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281

Query: 56  KPD 58
           + D
Sbjct: 282 RFD 284



 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C+LC+   C++ CP D     E   F +I  +ECI CG C   CP DAI
Sbjct: 317 VDGGCVLCEL--CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAI 367


>gi|146284007|ref|YP_001174160.1| tetrathionate reductase subunit B [Pseudomonas stutzeri A1501]
 gi|145572212|gb|ABP81318.1| tetrathionate reductase subunit B [Pseudomonas stutzeri A1501]
          Length = 254

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 109 LCNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDA 156


>gi|113868895|ref|YP_727384.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527671|emb|CAJ94016.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 721

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T  C +C    CV  CP     +      L+     C+ CG+CE  CP DAI
Sbjct: 585 VDTGKCTMC--MACVGACPSQALRDNPERPVLSFIERNCVQCGLCEKTCPEDAI 636



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 12/57 (21%)

Query: 11  LCKH--------TDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H        T C+++C  +     +++G+  + + P+ C+ CG C   CP  AI
Sbjct: 332 LCAHGRNQTTGCTACIDICSTEAIGSRWHDGKGRIEVTPNLCMGCGACTTVCPSGAI 388


>gi|109899273|ref|YP_662528.1| electron transport complex protein RnfB [Pseudoalteromonas
           atlantica T6c]
 gi|109701554|gb|ABG41474.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 110 VAFIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVDPCPVDCI 163


>gi|309701815|emb|CBJ01127.1| putative anaerobic dimethyl sulfoxide reductase, Fe-S subunit
           [Escherichia coli ETEC H10407]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|310828225|ref|YP_003960582.1| RnfB [Eubacterium limosum KIST612]
 gi|308739959|gb|ADO37619.1| RnfB [Eubacterium limosum KIST612]
          Length = 347

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI CK   CV+VCP +      N  +I+ D+C  C  C  +CP  AI
Sbjct: 216 GCIACKA--CVKVCPAEAITVENNLASINYDKCTQCQACFEKCPTGAI 261


>gi|326793210|ref|YP_004311031.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium lentocellum DSM 5427]
 gi|326543974|gb|ADZ85833.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium lentocellum DSM 5427]
          Length = 105

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C    C  VCP    YE +N + I    C  CG+C+ EC    I  + E G+E
Sbjct: 46  DKCIHCNW--CYMVCPEGVIYENDNKIQIDYRFCKGCGICQKECKKQCIIMEEEGGVE 101


>gi|163841886|ref|YP_001626291.1| ferredoxin--NADP reductase [Renibacterium salmoninarum ATCC
          33209]
 gi|162955362|gb|ABY24877.1| ferredoxin--NADP reductase [Renibacterium salmoninarum ATCC
          33209]
          Length = 472

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL----ELWLKINSEY 73
          L I P  CID G C   CPVDAI P  E  L    + + KIN++Y
Sbjct: 2  LYIDPKSCIDFGACVDACPVDAIFP-IESLLAGPKKAYPKINADY 45


>gi|149911479|ref|ZP_01900095.1| putative nitrite reductase, Fe-S protein (NrfC) [Moritella sp.
           PE36]
 gi|149805443|gb|EDM65451.1| putative nitrite reductase, Fe-S protein (NrfC) [Moritella sp.
           PE36]
          Length = 228

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 6   TENCILCKHTD---CVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP--VDAIKPD 58
           T N + C+H D   CV VCP    Y       + +H D+C+ CG C   CP  V    P+
Sbjct: 91  TFNRVSCQHCDNAPCVTVCPTGASYVDLKTGIVDVHSDKCVGCGYCLAACPYQVRFFNPE 150

Query: 59  TE 60
           T+
Sbjct: 151 TK 152


>gi|15668380|ref|NP_247176.1| 4Fe-4S iron-sulfur protein [Methanocaldococcus jannaschii DSM 2661]
 gi|2494448|sp|Q57661|Y208_METJA RecName: Full=Uncharacterized protein MJ0208
 gi|1498983|gb|AAB98191.1| 4Fe-4S iron-sulfur protein [Methanocaldococcus jannaschii DSM 2661]
          Length = 246

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           + VCP     + +NF+ I   +C+ CG C+  CP +AI    E  + +  KI++E
Sbjct: 166 INVCPNGAIVKRDNFVEILLSKCLGCGNCKKVCPYNAIIEGKEIKMRVR-KIDAE 219


>gi|157157756|ref|YP_001462877.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|157079786|gb|ABV19494.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|302337663|ref|YP_003802869.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634848|gb|ADK80275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 234

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  C    C   CPV      EN  A  ++ D CI CG CE  CP      D E
Sbjct: 131 ETCKQCAEPYCANACPVQAISTDENTGARVVNTDICIGCGSCERACPFGMATVDPE 186


>gi|255067816|ref|ZP_05319671.1| ferredoxin [Neisseria sicca ATCC 29256]
 gi|255047907|gb|EET43371.1| ferredoxin [Neisseria sicca ATCC 29256]
          Length = 130

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP DAI    E
Sbjct: 54 DECINCDVCEPECPNDAISQGEE 76


>gi|224370949|ref|YP_002605113.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693666|gb|ACN16949.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 361

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C  C+   C++ C ++    G+  +  H   CI CG+C   CPVDAI+ + +P
Sbjct: 276 EECTACE--TCLDRCQMNAIEIGDAAVVDHA-RCIGCGLCVTTCPVDAIRLEEKP 327


>gi|150399682|ref|YP_001323449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012385|gb|ABR54837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 482

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 12/61 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--------LAIHP-DECIDCGVCEPECPVDAI 55
           V ENC+LC   +C+  CP D   + ENF        +AI P   CI+CG+C  +CP  A+
Sbjct: 226 VNENCVLC--GNCILKCPKD-VLKIENFKISKTKEEMAIKPVKHCINCGLCVDKCPTGAL 282

Query: 56  K 56
           +
Sbjct: 283 R 283



 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 7  ENCILCKHTD---CVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          ENC  C +TD   C+E CP       +G+ F       CI CG CE ECP  AIK +   
Sbjct: 13 ENCEKCPNTDISKCMEACPTGAIKLLDGKAF------SCITCGTCEKECPTGAIKKNEYG 66

Query: 62 G 62
          G
Sbjct: 67 G 67


>gi|18977217|ref|NP_578574.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
 gi|18892876|gb|AAL80969.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
          Length = 627

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV + C  CK    +  CP   +   +  + I P  C  CGVC   CP DAIK  +E
Sbjct: 570 VVEDRCTGCKACILLTGCPALVYEPEKKKVRIDPLICTGCGVCNQLCPFDAIKFPSE 626


>gi|24372600|ref|NP_716642.1| NADH dehydrogenase subunit I [Shewanella oneidensis MR-1]
 gi|81744862|sp|Q8EI36|NUOI_SHEON RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24346625|gb|AAN54087.1|AE015546_4 NADH dehydrogenase I, I subunit [Shewanella oneidensis MR-1]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    ++          F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKSERDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|21226158|ref|NP_632080.1| heterodisulfate reductase subunit A [Methanosarcina mazei Go1]
 gi|41017211|sp|Q8Q0T0|HDRA_METMA RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|20904385|gb|AAM29752.1| Heterodisulfate reductase, subunit A [Methanosarcina mazei Go1]
          Length = 793

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-----FYEGEN-------------FLAIHPDECIDCG 44
           +V+ + C  C    C EVCPV+      +  G++              + I PD C+ CG
Sbjct: 237 FVLEDKCKGCVDL-CSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEP 61
           +C+  CP +A+  + +P
Sbjct: 296 LCQLACPAEAVDYEQKP 312


>gi|320177371|gb|EFW52372.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella
           dysenteriae CDC 74-1112]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfobulbus propionicus DSM 2032]
 gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfobulbus propionicus DSM 2032]
          Length = 683

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 16/66 (24%)

Query: 9   CILCKHTDCVEVC-------PVDCFYEGENFLAIHP-------DECIDCGVCEPECPVDA 54
           C+LC   DCV  C        +D  + G + + +          EC++CG C   CP  A
Sbjct: 150 CVLCG--DCVRFCDEIQSIGAIDFAFRGHDAMVLPAFGHDLGTTECVNCGQCASVCPTGA 207

Query: 55  IKPDTE 60
           + P +E
Sbjct: 208 LAPASE 213


>gi|255318323|ref|ZP_05359558.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82]
 gi|262379067|ref|ZP_06072223.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           radioresistens SH164]
 gi|255304635|gb|EET83817.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82]
 gi|262298524|gb|EEY86437.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           radioresistens SH164]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|254773429|ref|ZP_05214945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 330

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 16/97 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   ++      
Sbjct: 131 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPFGVVE------ 184

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + +  YAT       ++   PS   + GV QK
Sbjct: 185 ----RRNDGTYATP-----AQRPDRPSEEIVTGVAQK 212


>gi|296123732|ref|YP_003631510.1| hypothetical protein Plim_3498 [Planctomyces limnophilus DSM 3776]
 gi|296016072|gb|ADG69311.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Planctomyces limnophilus DSM 3776]
          Length = 463

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 22/76 (28%)

Query: 31  NFLAIHPDECIDCGVCEPECP---------------VDAIKPDTEPGLELWLKINSEYAT 75
           N +A H + C+DC  CE  CP               ++A + D +PGL       +  A+
Sbjct: 81  NEIASHLEACLDCRACETACPSGVQYGRLIEPFRVAMEATRTDEQPGL-------ASQAS 133

Query: 76  QWPNITTKKESLPSAA 91
           QW   T   +  PSA 
Sbjct: 134 QWLTSTLLTKLFPSAG 149


>gi|183599629|ref|ZP_02961122.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827]
 gi|188021881|gb|EDU59921.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|171464203|ref|YP_001798316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193741|gb|ACB44702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 88

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 4/29 (13%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELW 66
          DECI+C VCEPECP DAI      GLE++
Sbjct: 7  DECINCDVCEPECPNDAIY----MGLEIY 31


>gi|167771401|ref|ZP_02443454.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
 gi|167666041|gb|EDS10171.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
          Length = 403

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV    C+ C    C   C  D         +I   +C+ CG C   CPVDA++   +  
Sbjct: 226 YVEQSVCVGCGM--CKRNCAHDAIAITNRKASIDHSKCVGCGRCIGACPVDAVQAAQDEA 283

Query: 63  LELWLKINSEY 73
            ++  K  SEY
Sbjct: 284 FDILNKKISEY 294


>gi|160934322|ref|ZP_02081709.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
 gi|156866995|gb|EDO60367.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
          Length = 368

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV+ E C+ C+   C + C  D     +    I+   C  CG C   C  DAIKP  +  
Sbjct: 191 YVIQEQCVGCR--VCAKSCAHDAISFTDKKANINHSLCAGCGRCIGVCHRDAIKPADDES 248

Query: 63  LELWLKINSEY 73
            ++  +  +EY
Sbjct: 249 FDILNQKVAEY 259


>gi|74312090|ref|YP_310509.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|73855567|gb|AAZ88274.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|323164414|gb|EFZ50217.1| dimethylsulfoxide reductase, chain B [Shigella sonnei 53G]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|41033733|emb|CAF18533.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus tenax]
          Length = 650

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG-----LELW 66
           I P  C  C +C   CP +AIKP  EPG     LELW
Sbjct: 612 IDPSLCNGCSMCAQVCPYNAIKPQ-EPGKVNRWLELW 647


>gi|194437650|ref|ZP_03069746.1| hydrogenase-4 component A [Escherichia coli 101-1]
 gi|253772627|ref|YP_003035458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162456|ref|YP_003045564.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli B str. REL606]
 gi|297517623|ref|ZP_06936009.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli OP50]
 gi|194423456|gb|EDX39447.1| hydrogenase-4 component A [Escherichia coli 101-1]
 gi|242378081|emb|CAQ32852.1| hydrogenase 4, component A, subunit of hydrogenase 4 [Escherichia
          coli BL21(DE3)]
 gi|253323671|gb|ACT28273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974357|gb|ACT40028.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli B str. REL606]
 gi|253978524|gb|ACT44194.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BL21(DE3)]
 gi|323961274|gb|EGB56886.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323970998|gb|EGB66247.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|15802003|ref|NP_288024.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           EDL933]
 gi|15831549|ref|NP_310322.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|16129547|ref|NP_416106.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26247834|ref|NP_753874.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           CFT073]
 gi|82776844|ref|YP_403193.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|89108430|ref|AP_002210.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|91210799|ref|YP_540785.1| Fe-S subunit oxidoreductase [Escherichia coli UTI89]
 gi|117623775|ref|YP_852688.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli APEC O1]
 gi|157161048|ref|YP_001458366.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|168750603|ref|ZP_02775625.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168757500|ref|ZP_02782507.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168763713|ref|ZP_02788720.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168771685|ref|ZP_02796692.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168775813|ref|ZP_02800820.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168783406|ref|ZP_02808413.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168789420|ref|ZP_02814427.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168800843|ref|ZP_02825850.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170020058|ref|YP_001725012.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|170081253|ref|YP_001730573.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191165925|ref|ZP_03027762.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|193064916|ref|ZP_03045992.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|193066892|ref|ZP_03047861.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194426027|ref|ZP_03058583.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194436394|ref|ZP_03068495.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|195938978|ref|ZP_03084360.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208810651|ref|ZP_03252527.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208817045|ref|ZP_03258165.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821725|ref|ZP_03262045.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399816|ref|YP_002270660.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918901|ref|YP_002292985.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE11]
 gi|215486764|ref|YP_002329195.1| oxidoreductase, Fe-S subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328606|ref|ZP_03444687.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|218554156|ref|YP_002387069.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI1]
 gi|218558459|ref|YP_002391372.1| oxidoreductase, Fe-S subunit [Escherichia coli S88]
 gi|218689509|ref|YP_002397721.1| oxidoreductase, Fe-S subunit [Escherichia coli ED1a]
 gi|218695151|ref|YP_002402818.1| oxidoreductase, Fe-S subunit [Escherichia coli 55989]
 gi|218699845|ref|YP_002407474.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI39]
 gi|218705088|ref|YP_002412607.1| oxidoreductase, Fe-S subunit [Escherichia coli UMN026]
 gi|227886054|ref|ZP_04003859.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|237705528|ref|ZP_04536009.1| dimethylsulfoxide reductase subunit [Escherichia sp. 3_2_53FAA]
 gi|238900804|ref|YP_002926600.1| oxidoreductase, Fe-S subunit [Escherichia coli BW2952]
 gi|253773455|ref|YP_003036286.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161650|ref|YP_003044758.1| oxidoreductase, Fe-S subunit [Escherichia coli B str. REL606]
 gi|254793206|ref|YP_003078043.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018219|ref|ZP_05432084.1| oxidoreductase, Fe-S subunit [Shigella sp. D9]
 gi|256022751|ref|ZP_05436616.1| oxidoreductase, Fe-S subunit [Escherichia sp. 4_1_40B]
 gi|260843893|ref|YP_003221671.1| oxidoreductase, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|260855390|ref|YP_003229281.1| oxidoreductase, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|260868080|ref|YP_003234482.1| oxidoreductase, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|261227967|ref|ZP_05942248.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258299|ref|ZP_05950832.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282721|ref|YP_003499539.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. CB9615]
 gi|293405090|ref|ZP_06649082.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1412]
 gi|293409899|ref|ZP_06653475.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414905|ref|ZP_06657548.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           B185]
 gi|293445963|ref|ZP_06662385.1| dimethyl sulfoxide reductase subunit YnfG [Escherichia coli B088]
 gi|298380736|ref|ZP_06990335.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1302]
 gi|301029227|ref|ZP_07192340.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|306813449|ref|ZP_07447639.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli NC101]
 gi|307138239|ref|ZP_07497595.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli H736]
 gi|307310841|ref|ZP_07590487.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|309788770|ref|ZP_07683366.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|312966654|ref|ZP_07780874.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|312969603|ref|ZP_07783786.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|331642172|ref|ZP_08343307.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331647075|ref|ZP_08348169.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|331652977|ref|ZP_08353982.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331663058|ref|ZP_08363968.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331668261|ref|ZP_08369109.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331677447|ref|ZP_08378122.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331683095|ref|ZP_08383696.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332279270|ref|ZP_08391683.1| oxidoreductase [Shigella sp. D9]
 gi|77416847|sp|P0AAJ2|YNFG_ECOL6 RecName: Full=Probable anaerobic dimethyl sulfoxide reductase chain
           ynfG; AltName: Full=DMSO reductase iron-sulfur subunit
           ynfG
 gi|77416848|sp|P0AAJ1|YNFG_ECOLI RecName: Full=Probable anaerobic dimethyl sulfoxide reductase chain
           ynfG; AltName: Full=DMSO reductase iron-sulfur subunit
           ynfG
 gi|12515564|gb|AAG56576.1|AE005382_10 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|26108237|gb|AAN80439.1|AE016761_14 Probable anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli CFT073]
 gi|1742612|dbj|BAA15313.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13361761|dbj|BAB35718.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81240992|gb|ABB61702.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|91072373|gb|ABE07254.1| Fe-S subunit oxidoreductase [Escherichia coli UTI89]
 gi|115512899|gb|ABJ00974.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli APEC O1]
 gi|157066728|gb|ABV05983.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|169754986|gb|ACA77685.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|169889088|gb|ACB02795.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187768665|gb|EDU32509.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188015250|gb|EDU53372.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188999242|gb|EDU68228.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189355556|gb|EDU73975.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189359615|gb|EDU78034.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189366172|gb|EDU84588.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189370961|gb|EDU89377.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189376913|gb|EDU95329.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190904056|gb|EDV63768.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|192927403|gb|EDV82021.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|192959482|gb|EDV89916.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194416082|gb|EDX32348.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194424426|gb|EDX40412.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|208725167|gb|EDZ74874.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731388|gb|EDZ80077.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741848|gb|EDZ89530.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161216|gb|ACI38649.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209770048|gb|ACI83336.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770050|gb|ACI83337.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770052|gb|ACI83338.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770054|gb|ACI83339.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770056|gb|ACI83340.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209912160|dbj|BAG77234.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE11]
 gi|215264836|emb|CAS09221.1| oxidoreductase, Fe-S subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217317953|gb|EEC26380.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351883|emb|CAU97608.1| oxidoreductase, Fe-S subunit [Escherichia coli 55989]
 gi|218360924|emb|CAQ98496.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI1]
 gi|218365228|emb|CAR02949.1| oxidoreductase, Fe-S subunit [Escherichia coli S88]
 gi|218369831|emb|CAR17602.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI39]
 gi|218427073|emb|CAR07952.2| oxidoreductase, Fe-S subunit [Escherichia coli ED1a]
 gi|218432185|emb|CAR13073.1| oxidoreductase, Fe-S subunit [Escherichia coli UMN026]
 gi|222033347|emb|CAP76088.1| anaerobic dimethyl sulfoxide reductase chain [Escherichia coli
           LF82]
 gi|226900285|gb|EEH86544.1| dimethylsulfoxide reductase subunit [Escherichia sp. 3_2_53FAA]
 gi|227836983|gb|EEJ47449.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|238861969|gb|ACR63967.1| oxidoreductase, Fe-S subunit [Escherichia coli BW2952]
 gi|242377320|emb|CAQ32065.1| oxidoreductase, predicted Fe-S subunit, subunit of putative
           selenate reductase [Escherichia coli BL21(DE3)]
 gi|253324499|gb|ACT29101.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973551|gb|ACT39222.1| oxidoreductase, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253977746|gb|ACT43416.1| oxidoreductase, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|254592606|gb|ACT71967.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|257754039|dbj|BAI25541.1| oxidoreductase, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|257759040|dbj|BAI30537.1| oxidoreductase, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|257764436|dbj|BAI35931.1| oxidoreductase, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|260449289|gb|ACX39711.1| dimethylsulfoxide reductase, chain B [Escherichia coli DH1]
 gi|281178659|dbj|BAI54989.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE15]
 gi|290762594|gb|ADD56555.1| Probable anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. CB9615]
 gi|291322793|gb|EFE62221.1| dimethyl sulfoxide reductase subunit YnfG [Escherichia coli B088]
 gi|291427298|gb|EFF00325.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1412]
 gi|291432553|gb|EFF05532.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           B185]
 gi|291470367|gb|EFF12851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491574|gb|ADE90330.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           IHE3034]
 gi|298278178|gb|EFI19692.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1302]
 gi|299877863|gb|EFI86074.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|305853194|gb|EFM53634.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli NC101]
 gi|306909019|gb|EFN39515.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|307553559|gb|ADN46334.1| dimethylsulfoxide reductase, B subunit [Escherichia coli ABU 83972]
 gi|307626925|gb|ADN71229.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli UM146]
 gi|308923404|gb|EFP68915.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|310337888|gb|EFQ02977.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|312288764|gb|EFR16664.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|312946189|gb|ADR27016.1| oxidoreductase, Fe-S subunit [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315060895|gb|ADT75222.1| oxidoreductase, Fe-S subunit [Escherichia coli W]
 gi|315136229|dbj|BAJ43388.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli DH1]
 gi|315619043|gb|EFU99625.1| dimethylsulfoxide reductase, chain B [Escherichia coli 3431]
 gi|320188273|gb|EFW62935.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197771|gb|EFW72379.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           EC4100B]
 gi|320641943|gb|EFX11307.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H7 str. G5101]
 gi|320647259|gb|EFX16067.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H- str. 493-89]
 gi|320652552|gb|EFX20821.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H- str. H 2687]
 gi|320653073|gb|EFX21267.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658761|gb|EFX26435.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668612|gb|EFX35417.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H7 str. LSU-61]
 gi|323152910|gb|EFZ39180.1| dimethylsulfoxide reductase, chain B [Escherichia coli EPECa14]
 gi|323163340|gb|EFZ49167.1| dimethylsulfoxide reductase, chain B [Escherichia coli E128010]
 gi|323169880|gb|EFZ55536.1| dimethylsulfoxide reductase, chain B [Escherichia coli LT-68]
 gi|323180903|gb|EFZ66441.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1180]
 gi|323185873|gb|EFZ71230.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1357]
 gi|323187212|gb|EFZ72526.1| dimethylsulfoxide reductase, chain B [Escherichia coli RN587/1]
 gi|323378536|gb|ADX50804.1| dimethylsulfoxide reductase, chain B [Escherichia coli KO11]
 gi|323937383|gb|EGB33661.1| dimethylsulfoxide reductase [Escherichia coli E1520]
 gi|323940336|gb|EGB36528.1| dimethylsulfoxide reductase [Escherichia coli E482]
 gi|323947977|gb|EGB43971.1| dimethylsulfoxide reductase [Escherichia coli H120]
 gi|323952573|gb|EGB48445.1| dimethylsulfoxide reductase [Escherichia coli H252]
 gi|323956753|gb|EGB52488.1| dimethylsulfoxide reductase [Escherichia coli H263]
 gi|323962219|gb|EGB57811.1| dimethylsulfoxide reductase [Escherichia coli H489]
 gi|323973778|gb|EGB68952.1| dimethylsulfoxide reductase [Escherichia coli TA007]
 gi|324119343|gb|EGC13230.1| dimethylsulfoxide reductase [Escherichia coli E1167]
 gi|326341954|gb|EGD65735.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
 gi|326343504|gb|EGD67266.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|330911395|gb|EGH39905.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           AA86]
 gi|331038970|gb|EGI11190.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331043858|gb|EGI15994.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|331049075|gb|EGI21147.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331058857|gb|EGI30834.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331063455|gb|EGI35366.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331073907|gb|EGI45227.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331079310|gb|EGI50507.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332091391|gb|EGI96477.1| dimethylsulfoxide reductase, chain B [Shigella boydii 5216-82]
 gi|332101622|gb|EGJ04968.1| oxidoreductase [Shigella sp. D9]
 gi|332343306|gb|AEE56640.1| dimethylsulfoxide reductase, chain B DmsB [Escherichia coli UMNK88]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|323936373|gb|EGB32663.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|315425433|dbj|BAJ47097.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Caldiarchaeum subterraneum]
          Length = 223

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           V + C  C+   CVEVCPV+  ++  N   +  D  CI CG C   CP  A
Sbjct: 91  VPKMCNHCEEPSCVEVCPVNATFKAPNGEVLVDDNVCIGCGACIQNCPYGA 141


>gi|317048932|ref|YP_004116580.1| NADH-quinone oxidoreductase subunit I [Pantoea sp. At-9b]
 gi|316950549|gb|ADU70024.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. At-9b]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|239995948|ref|ZP_04716472.1| electron transport complex protein RnfB [Alteromonas macleodii ATCC
           27126]
          Length = 193

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 110 VAFIREDECIGC--TKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCI 163


>gi|238898693|ref|YP_002924374.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466452|gb|ACQ68226.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|215488185|ref|YP_002330616.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312964856|ref|ZP_07779096.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|215266257|emb|CAS10686.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312290412|gb|EFR18292.1| hydrogenase-4 component A [Escherichia coli 2362-75]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|212709896|ref|ZP_03318024.1| hypothetical protein PROVALCAL_00945 [Providencia alcalifaciens DSM
           30120]
 gi|212687707|gb|EEB47235.1| hypothetical protein PROVALCAL_00945 [Providencia alcalifaciens DSM
           30120]
          Length = 252

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + I  + C+ C  C   CP DA
Sbjct: 106 LCNHCDNPPCVPVCPVQATFQREDGIVVIDNERCVGCAYCVQACPYDA 153


>gi|206576263|ref|YP_002237331.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342]
 gi|288934261|ref|YP_003438320.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22]
 gi|290508464|ref|ZP_06547835.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55]
 gi|206565321|gb|ACI07097.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342]
 gi|288888990|gb|ADC57308.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22]
 gi|289777858|gb|EFD85855.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFELG 123


>gi|188533354|ref|YP_001907151.1| NADH dehydrogenase subunit I [Erwinia tasmaniensis Et1/99]
 gi|259907934|ref|YP_002648290.1| NADH dehydrogenase subunit I [Erwinia pyrifoliae Ep1/96]
 gi|292488836|ref|YP_003531723.1| NADH dehydrogenase I subunit I [Erwinia amylovora CFBP1430]
 gi|292899987|ref|YP_003539356.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946]
 gi|226737392|sp|B2VIN2|NUOI_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|188028396|emb|CAO96257.1| NADH dehydrogenase I subunit I [Erwinia tasmaniensis Et1/99]
 gi|224963556|emb|CAX55046.1| NADH dehydrogenase I subunit I [Erwinia pyrifoliae Ep1/96]
 gi|283477815|emb|CAY73731.1| NADH dehydrogenase I chain I [Erwinia pyrifoliae DSM 12163]
 gi|291199835|emb|CBJ46959.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946]
 gi|291554270|emb|CBA21585.1| NADH dehydrogenase I chain I [Erwinia amylovora CFBP1430]
 gi|310768158|gb|ADP13108.1| NADH dehydrogenase subunit I [Erwinia sp. Ejp617]
 gi|312172996|emb|CBX81251.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC BAA-2158]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETADGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|148642370|ref|YP_001272883.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551387|gb|ABQ86515.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
          Length = 453

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIK 56
           GE +  I+PD C+ CG C   CP DAIK
Sbjct: 118 GEAYSVINPDTCVRCGYCFRVCPTDAIK 145


>gi|83590718|ref|YP_430727.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573632|gb|ABC20184.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 176

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++  C  C+   C   CPV    +  N + I+ D CI C  C   CP  +I+
Sbjct: 56  LSVRCRHCEDAPCARACPVGAITQKNNVVLINSDRCIGCKTCAIVCPFGSIE 107


>gi|121998731|ref|YP_001003518.1| sulfite reductase, dissimilatory-type subunit beta [Halorhodospira
           halophila SL1]
 gi|121590136|gb|ABM62716.1| dissimilatory sulfite reductase beta subunit [Halorhodospira
           halophila SL1]
          Length = 362

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 11  LCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+    V  CPV        +G+  L +   +C+ CG C P CP   I       L +W
Sbjct: 207 VCERPSVVARCPVAAIRPAVVDGKPSLEVDESKCVACGACYPPCPPMQINDPEHSRLAIW 266

Query: 67  LKINSEYATQWP 78
           +  N   A   P
Sbjct: 267 VGGNHSNARGVP 278


>gi|325290458|ref|YP_004266639.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophobotulus glycolicus DSM 8271]
 gi|324965859|gb|ADY56638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophobotulus glycolicus DSM 8271]
          Length = 97

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ E C+ C+   C EVCP   F   +    +   D C++CG C   CPV+AI  +   G
Sbjct: 14 LLVEKCVGCER--CTEVCPHGVFGIADKRAKLKDRDSCMECGACAMNCPVNAISVEASVG 71


>gi|324118175|gb|EGC12072.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|300930083|ref|ZP_07145509.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300462010|gb|EFK25503.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|293395177|ref|ZP_06639463.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582]
 gi|291422354|gb|EFE95597.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|237809387|ref|YP_002893827.1| NADH dehydrogenase subunit I [Tolumonas auensis DSM 9187]
 gi|259514790|sp|C4LB38|NUOI_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|237501648|gb|ACQ94241.1| NADH-quinone oxidoreductase, chain I [Tolumonas auensis DSM 9187]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAERVDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|170719880|ref|YP_001747568.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida W619]
 gi|169757883|gb|ACA71199.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida W619]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIQAK 572


>gi|104780001|ref|YP_606499.1| D-lactate deshydrogenase [Pseudomonas entomophila L48]
 gi|95108988|emb|CAK13684.1| putative D-lactate deshydrogenase [Pseudomonas entomophila L48]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIQAK 572


>gi|78044780|ref|YP_361471.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996895|gb|ABB15794.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 302

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + ENC  C    C ++CPV+     +  +++  + CI CG C   CP +A + +
Sbjct: 173 IKENCTACGL--CTKICPVNAITLNQQEISVDYEVCIGCGDCVKACPFEAYRGE 224


>gi|30063104|ref|NP_837275.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|30041353|gb|AAP17082.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|281601024|gb|ADA74008.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Shigella flexneri 2002017]
 gi|313649044|gb|EFS13480.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2a str.
           2457T]
 gi|332757173|gb|EGJ87511.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 4343-70]
 gi|332758411|gb|EGJ88732.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-671]
 gi|332766983|gb|EGJ97182.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2930-71]
 gi|333003851|gb|EGK23386.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-218]
 gi|333005235|gb|EGK24755.1| dimethylsulfoxide reductase, chain B [Shigella flexneri VA-6]
 gi|333017930|gb|EGK37235.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-304]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|312967579|ref|ZP_07781794.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 2362-75]
 gi|312287776|gb|EFR15681.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 2362-75]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|296132292|ref|YP_003639539.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296030870|gb|ADG81638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 261

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C    C+ VC        +N  + I  D CI C  C   CP  AI  D E G
Sbjct: 72  QCMHCTEASCMAVCAAGAISRADNGQVVIDRDTCIGCKNCVVACPFGAIGFDEETG 127


>gi|170768738|ref|ZP_02903191.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|170122286|gb|EDS91217.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|91204283|emb|CAJ71936.1| hypothetical protein kustc1191 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 308

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    CVE C  D     +  + I  ++C++CG+C   CPV  IK
Sbjct: 194 CIEC--MKCVEACREDAITVKDAQVTIDKEKCVECGICAKVCPVGTIK 239


>gi|26991420|ref|NP_746845.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida KT2440]
 gi|24986491|gb|AAN70309.1|AE016671_10 D-lactate dehydrogenase, putative [Pseudomonas putida KT2440]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           D+CI+CG CEP CP   +       + +W  I    A Q   I T++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIQ---AKQRAGIDTRE 581


>gi|41017304|sp|Q49180|MVHB_METFE RecName: Full=Polyferredoxin protein mvhB
 gi|149806|gb|AAA72833.1| polyferredoxin (mvhB) [Methanothermus fervidus]
          Length = 412

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 17/109 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI---------K 56
           E CI C    CVE+CP   F E ++ L +  P+ C  CG+CE  CP DAI         K
Sbjct: 214 EECIGC--NTCVEICPGG-FIEPKSDLTVSLPEICPACGLCEKLCPTDAIELEVKLGPAK 270

Query: 57  PDTEPGL---ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
           P TE G+   +   K     A   PN   +  S P      G+K+  EK
Sbjct: 271 PVTEEGIVYNDENCKFCGRCALNCPNEAIRVVS-PKGRVFPGLKKVDEK 318



 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLA---------IHPDECIDCGVCEPECPVDAI 55
           C+LC+   CV VCP++    EG    A         I+  +C+ CG+C PECPV+AI
Sbjct: 107 CVLCQQ--CVNVCPIEVIGIEGVKEPARVEIKIDKPIYIVDCVGCGLCVPECPVNAI 161


>gi|148549805|ref|YP_001269907.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida F1]
 gi|148513863|gb|ABQ80723.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida F1]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           D+CI+CG CEP CP   +       + +W  I    A Q   I T++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIQ---AKQRAGIDTRE 581


>gi|312136954|ref|YP_004004291.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224673|gb|ADP77529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 412

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 49/109 (44%), Gaps = 17/109 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI---------K 56
           E CI C    CVE+CP   F E ++ L +  P+ C  CG+CE  CP DAI         K
Sbjct: 214 EECIGC--NTCVEICPGG-FIEPKSDLTVSLPEICPACGLCEKLCPTDAIELEVKLGPAK 270

Query: 57  PDTEPGL---ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
           P TE G+   +   K     A   PN   +  S P      G+K+  EK
Sbjct: 271 PVTEEGIVYNDENCKFCGRCALNCPNEAIRVVS-PKGRVFPGLKKVDEK 318



 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLA---------IHPDECIDCGVCEPECPVDAI 55
           C+LC+   CV VCP++    EG    A         I+  +C+ CG+C PECPV+AI
Sbjct: 107 CVLCQQ--CVNVCPIEVIGIEGVKEPARVEIKIDKPIYIVDCVGCGLCVPECPVNAI 161


>gi|331664038|ref|ZP_08364948.1| hydrogenase-4 component A [Escherichia coli TA143]
 gi|331059837|gb|EGI31814.1| hydrogenase-4 component A [Escherichia coli TA143]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|302336783|ref|YP_003801989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
 gi|301633968|gb|ADK79395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
          Length = 98

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          TE CI C    C +VC VD       +G+  L + P EC  CG C  ECP  AI+
Sbjct: 22 TERCIACNR--CADVCQVDVLVPSLEKGKPPLVLFPGECWYCGCCVMECPTHAIQ 74


>gi|284922834|emb|CBG35923.1| putative oxidoreductase, 4Fe-4S subunit [Escherichia coli 042]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG      
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGDTRQQI 114

Query: 69  INSEYATQWPNITTKKESLPSAA-------KMDGVKQKYEKYFSPNP 108
           +  +   Q        ES P+ A       ++  V+Q+       NP
Sbjct: 115 VKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGENP 161


>gi|284922428|emb|CBG35515.1| hydrogenase-4 component A [Escherichia coli 042]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|256371808|ref|YP_003109632.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008392|gb|ACU53959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 512

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C +  CV  CP    Y+  +  +  +   CI C  C   CP DAI
Sbjct: 67  CNQCTNPPCVAACPTGAMYQRPDGIVDFNKAICIGCKACMAACPYDAI 114


>gi|209525025|ref|ZP_03273569.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Arthrospira maxima CS-328]
 gi|209494434|gb|EDZ94745.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Arthrospira maxima CS-328]
          Length = 1192

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 24  DCFYEGENF-LAIHPDECIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYA 74
           D  +EG+ F + + P++C  CGVC   CP          AI  +++P +    + N E+ 
Sbjct: 729 DKAFEGQKFTIQVSPEDCTGCGVCVDVCPAKNKSMPSKKAINMESQPPIRATERENWEFF 788

Query: 75  TQWPN 79
              PN
Sbjct: 789 LNLPN 793


>gi|20092251|ref|NP_618326.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
 gi|19917487|gb|AAM06806.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
          Length = 288

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ ENC+ CK   C + C V      ++ + I  ++CI CG C   C  DA++ + + G 
Sbjct: 166 ILEENCVGCKL--CEKACKVGAITVLDDKIRIDLEKCILCGACIAACRKDALRAE-KTGC 222

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
            +++  N     + P   TK   L +  ++  + +K  +Y+ 
Sbjct: 223 TIFVGGN---GGRHPRQGTKLLELAAEEQLFSILEKTFEYYR 261


>gi|89893277|ref|YP_516764.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332725|dbj|BAE82320.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           + Y ++ +C  C++ +CV VCP   + + ++ + +H P  C  CG C   CP    K   
Sbjct: 54  LHYFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFHVPKYSL 113

Query: 60  EPG 62
             G
Sbjct: 114 SSG 116


>gi|320100963|ref|YP_004176555.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Desulfurococcus mucosus DSM 2162]
 gi|319753315|gb|ADV65073.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus mucosus DSM 2162]
          Length = 637

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + C  C     +  CP      G     I  + C  CG+C   CP  AI    +P  
Sbjct: 572 VIEDKCTGCNACINLTACPAIVIPTGSRKPVILEELCAGCGLCASICPFKAISVKNQPST 631

Query: 64  ELWLKI 69
           E W K+
Sbjct: 632 E-WEKL 636


>gi|313887911|ref|ZP_07821590.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846077|gb|EFR33459.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 305

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C + CP D  +   N  +I  D+CI+CG+C  +CP  AI
Sbjct: 223 CEKNCPKDAIHVENNLASIDYDKCINCGICVSKCPTGAI 261


>gi|264678371|ref|YP_003278278.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|262208884|gb|ACY32982.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
          Length = 241

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 95  LCNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDA 142


>gi|242277849|ref|YP_002989978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120743|gb|ACS78439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDA 54
           T+     C+ C +  CV+ CP    ++ +    +  D   CI CG C P CP DA
Sbjct: 55  THFQPGGCMHCDNPTCVQACPTGATFKDKTDGTVRIDTSLCIGCGNCMPACPYDA 109


>gi|218700939|ref|YP_002408568.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI39]
 gi|218370925|emb|CAR18744.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI39]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|183598540|ref|ZP_02960033.1| hypothetical protein PROSTU_01934 [Providencia stuartii ATCC 25827]
 gi|188020717|gb|EDU58757.1| hypothetical protein PROSTU_01934 [Providencia stuartii ATCC 25827]
          Length = 245

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + I  + C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVIDNERCVGCAYCVQACPYDA 146


>gi|183233764|ref|XP_651284.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801421|gb|EAL45897.2| hypothetical protein EHI_099860 [Entamoeba histolytica HM-1:IMSS]
          Length = 87

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDAIK 56
           +VT +CI C  + C++ CP     E  N +   P  DEC+ C +CE  CP++AIK
Sbjct: 33 IIVTNDCIGC--SACMDNCPAG-VLEIVNGICTAPRIDECLQCHLCEDNCPINAIK 85


>gi|160935009|ref|ZP_02082395.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
 gi|156866462|gb|EDO59834.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
          Length = 431

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+ C  T+C++ CP +     E    I  + CIDCG C   CP  A K
Sbjct: 6  DKCLGC--TNCIKRCPTEAIRVREGKAQIISERCIDCGECIRVCPHHAKK 53


>gi|254230289|ref|ZP_04923678.1| 4Fe-4S binding domain protein [Vibrio sp. Ex25]
 gi|151937186|gb|EDN56055.1| 4Fe-4S binding domain protein [Vibrio sp. Ex25]
          Length = 249

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 162


>gi|150399742|ref|YP_001323509.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012445|gb|ABR54897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 395

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 8   NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDE-------CIDCGVCEPECPVDAI 55
           +C+LC+   CV++CPV+        +      I P+E       C+ CGVC PECPVDAI
Sbjct: 90  HCVLCEK--CVDICPVEIISLPGKIDKPKKDVIIPNEPIAVTKDCVACGVCVPECPVDAI 147

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +    ++    I     +Q    T    ++  A K    +QK  K F+ N
Sbjct: 148 SIEDTAVIDTNKCIYCTICSQ----TCPWNAIFVAGKKPQKRQKNIKSFTVN 195


>gi|300951821|ref|ZP_07165633.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301644471|ref|ZP_07244468.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|331643098|ref|ZP_08344233.1| hydrogenase-4 component A [Escherichia coli H736]
 gi|300448952|gb|EFK12572.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301077216|gb|EFK92022.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|331039896|gb|EGI12116.1| hydrogenase-4 component A [Escherichia coli H736]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|91772347|ref|YP_565039.1| formylmethanofuran dehydrogenase, subunit F [Methanococcoides
           burtonii DSM 6242]
 gi|91711362|gb|ABE51289.1| Molybdenum formylmethanofuran dehydrogenase subunit F
           [Methanococcoides burtonii DSM 6242]
          Length = 340

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 17  CVEVCPVDCFYE-----GENF--LAIHPDECIDCGVCEPECPVDAI 55
           CV+VCP +  +      GE    +A  PD CI CG C   CPV+AI
Sbjct: 181 CVDVCPCNALFNPEWAPGERVDKVAQRPDACIYCGACAVSCPVNAI 226


>gi|73670980|ref|YP_306995.1| hypothetical protein Mbar_A3546 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398142|gb|AAZ72415.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 438

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ CK    +E CP+      EN    +P+ C +CG+C   C  +A   +
Sbjct: 331 EKCLNCKDCLVIEACPMGAVSRRENGAVHNPEFCFNCGLCISRCRGEAFSAN 382


>gi|89109287|ref|AP_003067.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          W3110]
 gi|90111444|ref|NP_416976.4| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|170082091|ref|YP_001731411.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238901646|ref|YP_002927442.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BW2952]
 gi|256021833|ref|ZP_05435698.1| hydrogenase 4, 4Fe-4S subunit [Escherichia sp. 4_1_40B]
 gi|301023842|ref|ZP_07187575.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|307139115|ref|ZP_07498471.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli H736]
 gi|140645|sp|P23481|HYFA_ECOLI RecName: Full=Hydrogenase-4 component A
 gi|147018|gb|AAB88563.1| HyfA [Escherichia coli]
 gi|1799909|dbj|BAA16359.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K12 substr.
          W3110]
 gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|169889926|gb|ACB03633.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238861459|gb|ACR63457.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BW2952]
 gi|260448440|gb|ACX38862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli DH1]
 gi|299880642|gb|EFI88853.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|315137104|dbj|BAJ44263.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli DH1]
 gi|315615724|gb|EFU96356.1| hydrogenase-4 component A [Escherichia coli 3431]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|331002403|ref|ZP_08325921.1| hypothetical protein HMPREF0491_00783 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410219|gb|EGG89653.1| hypothetical protein HMPREF0491_00783 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 314

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-----PDECIDCGVCEPECPVD 53
           V+    I      C  +CP+  FY   N +  +      D+C++CG+CE  C +D
Sbjct: 201 VIVALSIFTYRPFCRYICPLGAFYSFFNKIGFYKMEFVSDKCVNCGLCERSCKMD 255


>gi|319942142|ref|ZP_08016460.1| 4Fe-4S ferredoxin-type protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804352|gb|EFW01236.1| 4Fe-4S ferredoxin-type protein [Sutterella wadsworthensis 3_1_45B]
          Length = 266

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           IHPD C  CG+CE  CP D           +   I S Y   W       E  P   + +
Sbjct: 178 IHPDACTGCGLCEKGCPTDEASIRVADPRGVLGTIGSHYRLSW-----LSEDDPKNTRRE 232

Query: 95  GVKQKYEKYFSPNPGGKNT 113
              +K      PNP   + 
Sbjct: 233 TTPEKSISKNDPNPASDSA 251


>gi|311696982|gb|ADP99855.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
           [marine bacterium HP15]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           D+CI+CG CEP CP + +       + +W  I +
Sbjct: 538 DKCIECGFCEPVCPSEGLTLSPRQRIVIWRDIQA 571


>gi|300921411|ref|ZP_07137771.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|331653906|ref|ZP_08354907.1| hydrogenase-4 component A [Escherichia coli M718]
 gi|300411645|gb|EFJ94955.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|331048755|gb|EGI20831.1| hydrogenase-4 component A [Escherichia coli M718]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|218705980|ref|YP_002413499.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli UMN026]
 gi|218433077|emb|CAR13972.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli UMN026]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|170683521|ref|YP_001744664.1| hydrogenase-4 component A [Escherichia coli SMS-3-5]
 gi|170521239|gb|ACB19417.1| hydrogenase-4 component A [Escherichia coli SMS-3-5]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|121534160|ref|ZP_01665985.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307263|gb|EAX48180.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 272

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVD 53
            C  C    CV+VCP    ++ +   +A+  ++CI CG C   CP +
Sbjct: 74  QCFHCGEAACVKVCPSGALFKTKTGIVAVDREKCIACGYCHNACPFN 120


>gi|221066934|ref|ZP_03543039.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
 gi|220711957|gb|EED67325.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
          Length = 224

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK-----PDTEPG 62
           CI C  T C++ CP D        +  +  D C  C +C P CPVD I+      DT  G
Sbjct: 94  CIGC--TLCIKACPTDAILGANKRMHTVIADHCTGCELCIPVCPVDCIELINASADTT-G 150

Query: 63  LELWLKINSEYA 74
              W    +E+A
Sbjct: 151 WSAWSAAQAEHA 162


>gi|56698380|ref|YP_168753.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56680117|gb|AAV96783.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 268

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 99  KSCLHCEDAPCVTVCPTGASYKRSEDGIVLVNESDCIGCGLCAWACPYGARELDLAEGV 157


>gi|78355728|ref|YP_387177.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218133|gb|ABB37482.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 285

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
           C+ C+   CVE CP    ++      + I P  CI CG C P CP  A
Sbjct: 61  CMHCESPTCVEACPTGATWKDRETGIVEIDPALCIGCGNCIPACPYGA 108


>gi|51894277|ref|YP_076968.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
 gi|51857966|dbj|BAD42124.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
          Length = 149

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + E CI C  T CV VCP +    E +    I P  CIDC  C   CPV AI
Sbjct: 1  MPHYIDEKCIGC--TACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAI 54


>gi|299149444|ref|ZP_07042501.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
 gi|298512631|gb|EFI36523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
          Length = 489

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|297583775|ref|YP_003699555.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142232|gb|ADH98989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 179

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
           +V   C+ C    CV+VC     ++ E    +A +PD+C  C  C   CP DA
Sbjct: 53  IVPVQCMHCDDAPCVKVCSTQATFKVEENGIVAFNPDKCTGCKACMAACPYDA 105


>gi|119870982|ref|YP_940934.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. KMS]
 gi|161407219|ref|YP_642026.2| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. MCS]
 gi|119697071|gb|ABL94144.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
          Length = 559

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIK--PDT 59
           NC  C    C   CP D      EG +      D C  CG C  +CPV AI+  P+T
Sbjct: 504 NCFECD--GCYGACPEDAIIKVAEGHHGYEFVYDRCTGCGACFEQCPVHAIEMLPET 558


>gi|126437798|ref|YP_001073489.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. JLS]
 gi|126237598|gb|ABO00999.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 558

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIK--PDT 59
           NC  C    C   CP D      EG +      D C  CG C  +CPV AI+  P+T
Sbjct: 504 NCFECD--GCYGACPEDAIIKVAEGHHGYEFVYDRCTGCGACFEQCPVHAIEMLPET 558


>gi|82777689|ref|YP_404038.1| NADH dehydrogenase subunit I [Shigella dysenteriae Sd197]
 gi|110287773|sp|Q32DQ8|NUOI_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81241837|gb|ABB62547.1| NADH dehydrogenase I chain I [Shigella dysenteriae Sd197]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    +           F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKTETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|14521449|ref|NP_126925.1| putative ATPase RIL [Pyrococcus abyssi GE5]
 gi|5458668|emb|CAB50155.1| ABC transporter ATP-binding protein [Pyrococcus abyssi GE5]
          Length = 593

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP +AI
Sbjct: 20 CGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 70


>gi|187730471|ref|YP_001881273.1| hydrogenase-4 component A [Shigella boydii CDC 3083-94]
 gi|187427463|gb|ACD06737.1| hydrogenase-4 component A [Shigella boydii CDC 3083-94]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|330999837|ref|ZP_08323541.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
 gi|329573608|gb|EGG55201.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
          Length = 201

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
           Y V+  C  C    CV+VCP    ++   +  + I   +CI CG+C   CP  A
Sbjct: 61  YYVSLGCNHCSGPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACPYHA 114


>gi|293410876|ref|ZP_06654452.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471344|gb|EFF13828.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|293405917|ref|ZP_06649909.1| hydrogenase-4 component A [Escherichia coli FVEC1412]
 gi|298381665|ref|ZP_06991264.1| hydrogenase-4 component A [Escherichia coli FVEC1302]
 gi|300897640|ref|ZP_07116044.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|291428125|gb|EFF01152.1| hydrogenase-4 component A [Escherichia coli FVEC1412]
 gi|298279107|gb|EFI20621.1| hydrogenase-4 component A [Escherichia coli FVEC1302]
 gi|300358616|gb|EFJ74486.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|288931037|ref|YP_003435097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893285|gb|ADC64822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 354

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++E CI C+  +CV  CPVD         AI+ D+CI C +CE  CP + I+
Sbjct: 114 ISEGCIECR--NCVMFCPVDAVRIERGSPAINEDKCIYCEICEYVCPKNVIE 163


>gi|253571979|ref|ZP_04849384.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838576|gb|EES66662.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 489

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|237723391|ref|ZP_04553872.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447913|gb|EEO53704.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 489

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|257790284|ref|YP_003180890.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830097|ref|ZP_08163554.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474181|gb|ACV54501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487564|gb|EGC90002.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 227

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TY +T  C  C++ +CV+VCP    ++ E+  + I   +CI C  C   CP      + E
Sbjct: 57  TYFLTVQCQHCENPECVKVCPTGASHKLEDGTVQIDKSKCIGCQFCAMSCPYSVRYLNEE 116

Query: 61  PGL 63
            G+
Sbjct: 117 EGV 119


>gi|222034581|emb|CAP77323.1| electron transport protein ygfS [Escherichia coli LF82]
 gi|312947418|gb|ADR28245.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 162

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|163737101|ref|ZP_02144519.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
 gi|161389705|gb|EDQ14056.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
          Length = 264

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++   CI CG+C   CP  A + D   G+
Sbjct: 86  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESNCIGCGLCAWSCPYGARELDLAEGV 144


>gi|221069698|ref|ZP_03545803.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni KF-1]
 gi|220714721|gb|EED70089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni KF-1]
          Length = 433

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPVDAI  D
Sbjct: 17 IDPEICIRCNTCEATCPVDAITHD 40



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I
Sbjct: 20 EICIRC--NTCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSI 66


>gi|193064781|ref|ZP_03045859.1| hydrogenase-4 component A [Escherichia coli E22]
 gi|194427266|ref|ZP_03059816.1| hydrogenase-4 component A [Escherichia coli B171]
 gi|218555007|ref|YP_002387920.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI1]
 gi|260845115|ref|YP_003222893.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O103:H2 str.
          12009]
 gi|260856576|ref|YP_003230467.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O26:H11 str.
          11368]
 gi|260869171|ref|YP_003235573.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O111:H- str.
          11128]
 gi|307312525|ref|ZP_07592158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|192927664|gb|EDV82280.1| hydrogenase-4 component A [Escherichia coli E22]
 gi|194414587|gb|EDX30859.1| hydrogenase-4 component A [Escherichia coli B171]
 gi|218361775|emb|CAQ99372.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI1]
 gi|257755225|dbj|BAI26727.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O26:H11 str.
          11368]
 gi|257760262|dbj|BAI31759.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O103:H2 str.
          12009]
 gi|257765527|dbj|BAI37022.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O111:H- str.
          11128]
 gi|306907448|gb|EFN37952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|315061800|gb|ADT76127.1| hydrogenase 4, membrane subunit [Escherichia coli W]
 gi|323156083|gb|EFZ42242.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323159332|gb|EFZ45317.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323177399|gb|EFZ62987.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323377619|gb|ADX49887.1| hydrogenase 4 Fe-S subunit [Escherichia coli KO11]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|219667681|ref|YP_002458116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537941|gb|ACL19680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 178

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIK 56
           ++ +C+ C    C  VCP   + + E+ L I   D+C+ CG C   CP  A K
Sbjct: 55  LSHSCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACPYQAPK 107


>gi|320176273|gb|EFW51334.1| Hydrogenase-4 component A [Shigella dysenteriae CDC 74-1112]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|320353511|ref|YP_004194850.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122013|gb|ADW17559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 148

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           T     +C+ C    C  VCP        +  + +    C  CG C P CPVDAI   P+
Sbjct: 47  TGFTAVHCLACTSPPCANVCPTGALVPRKDGGVVVKKKLCNRCGACAPACPVDAIFLDPE 106

Query: 59  TEPGL 63
            EP L
Sbjct: 107 GEPFL 111


>gi|302548141|ref|ZP_07300483.1| LOW QUALITY PROTEIN: formate dehydrogenase, iron-sulfur subunit
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302465759|gb|EFL28852.1| LOW QUALITY PROTEIN: formate dehydrogenase, iron-sulfur subunit
           [Streptomyces himastatinicus ATCC 53653]
          Length = 260

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP
Sbjct: 100 MSSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACP 148


>gi|300940277|ref|ZP_07154874.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300454918|gb|EFK18411.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|298387444|ref|ZP_06996996.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
 gi|298259651|gb|EFI02523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
          Length = 489

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|240103196|ref|YP_002959505.1| putative ATPase RIL [Thermococcus gammatolerans EJ3]
 gi|239910750|gb|ACS33641.1| Predicted ATPase, RNase L inhibitor-like protein [Thermococcus
          gammatolerans EJ3]
          Length = 590

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP +AI
Sbjct: 17 CGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 67


>gi|163931196|pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor
          Protein From Pyrococcus Abysii
          Length = 607

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP +AI
Sbjct: 34 CGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 84


>gi|162148247|ref|YP_001602708.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786824|emb|CAP56407.1| putative NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 149

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 20/90 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        +G    ++  I+   CI CG CE  CP  AI+ 
Sbjct: 28  ERCVACGL--CAVACPVDCISLQKTEQDGRWYPDYFRINFSRCIFCGFCEEACPTYAIQ- 84

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESL 87
              P  E+     SEY    P++  +KE L
Sbjct: 85  -LTPDFEM-----SEYVR--PSLVYEKEDL 106


>gi|281356040|ref|ZP_06242533.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
 gi|281317409|gb|EFB01430.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
          Length = 463

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ +C+ C    CV VCP            I   +CI+CG C   CP  AI
Sbjct: 111 VSNSCVGCFARPCVGVCPKQAIQVINQRSTIDRTKCINCGKCMTVCPYHAI 161


>gi|167035729|ref|YP_001670960.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida GB-1]
 gi|166862217|gb|ABZ00625.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida GB-1]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           D+CI+CG CEP CP   +       + +W  I    A Q   I T++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIK---AKQRAGIDTRE 581


>gi|11498862|ref|NP_070091.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649316|gb|AAB89980.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 369

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V +  CI C    C+  CP+       N     +  ++C+ CGVC P CPV+AI+     
Sbjct: 285 VDSSKCIACG--ICMLRCPMKAVKAKINREPANVEAEKCLGCGVCVPTCPVEAIELVERE 342

Query: 62  GLELW 66
            L+ W
Sbjct: 343 ELQEW 347


>gi|317484410|ref|ZP_07943325.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924329|gb|EFV45500.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 179

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECP 51
             C+ C    CVEVCP +     E +  + I  + C+ CG C+  CP
Sbjct: 83  RACVQCPQPRCVEVCPKEALIRRESDGIVFIREEACVGCGACQKACP 129


>gi|312602256|ref|YP_004022101.1| ferredoxin--NADP reductase [Burkholderia rhizoxinica HKI 454]
 gi|312169570|emb|CBW76582.1| Ferredoxin--NADP reductase (EC 1.18.1.2) [Burkholderia
          rhizoxinica HKI 454]
          Length = 406

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CP D      N   ++   C  C  C P CP  AI
Sbjct: 14 CIRC--NTCEETCPNDAITHDANNYVVNAQVCNGCMACVPPCPTGAI 58


>gi|262168762|ref|ZP_06036457.1| sensor kinase CitA [Vibrio cholerae RC27]
 gi|262022880|gb|EEY41586.1| sensor kinase CitA [Vibrio cholerae RC27]
          Length = 138

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 17/21 (80%)

Query: 1  MTYVVTENCILCKHTDCVEVC 21
          M +VVT+NCI CK+TDCV V 
Sbjct: 1  MAFVVTDNCIQCKYTDCVAVL 21


>gi|288575149|ref|ZP_06393506.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570890|gb|EFC92447.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 229

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E+C+ C  T C + CPV    EG+      I P++C+ CGVC  +CP  AI+ D
Sbjct: 170 VREEDCVGC--TICAKACPVGAI-EGKVKEKHVIDPEKCVGCGVCASKCPKGAIEED 223


>gi|256830011|ref|YP_003158739.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579187|gb|ACU90323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 185

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           C  C++  C+ VCPV+ + + E+ + +H  E CI CG C   CP  A
Sbjct: 59  CNHCENPTCLNVCPVEAYTKREDGVVVHHQEKCIGCGNCIRSCPYGA 105


>gi|227873120|ref|ZP_03991412.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
 gi|227841014|gb|EEJ51352.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
          Length = 355

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E   LC H  DC+  CP    Y  E  +A  P++CI C  C   C  +A
Sbjct: 113 ETRALCIHCGDCIPGCPTKAIYWEEGRVAFSPEKCIGCDQCIHACTHNA 161


>gi|218890264|ref|YP_002439128.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           LESB58]
 gi|218770487|emb|CAW26252.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 774

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECP 51
           CI C   DC +VCPV        F+    E E  LA +  +CI+CG C   CP
Sbjct: 369 CIRCG--DCAQVCPVSLLPQQLHFFALGNEHEQLLAHNLFDCIECGACAYVCP 419


>gi|160886568|ref|ZP_02067571.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
 gi|156108453|gb|EDO10198.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
          Length = 489

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|108772248|gb|ABG10970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
          Length = 545

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIK--PDT 59
           NC  C    C   CP D      EG +      D C  CG C  +CPV AI+  P+T
Sbjct: 490 NCFECD--GCYGACPEDAIIKVAEGHHGYEFVYDRCTGCGACFEQCPVHAIEMLPET 544


>gi|74312799|ref|YP_311218.1| NADH dehydrogenase subunit I [Shigella sonnei Ss046]
 gi|110287774|sp|Q3YZS9|NUOI_SHISS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|73856276|gb|AAZ88983.1| NADH dehydrogenase I chain I [Shigella sonnei Ss046]
 gi|323168550|gb|EFZ54230.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           sonnei 53G]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|331673937|ref|ZP_08374700.1| hydrogenase-4 component A [Escherichia coli TA280]
 gi|331069210|gb|EGI40602.1| hydrogenase-4 component A [Escherichia coli TA280]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEKAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|326561163|gb|EGE11528.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 7169]
 gi|326561574|gb|EGE11915.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 46P47B1]
 gi|326567649|gb|EGE17757.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 12P80B1]
 gi|326567948|gb|EGE18045.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC1]
 gi|326569471|gb|EGE19531.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC8]
 gi|326572766|gb|EGE22752.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC7]
 gi|326574014|gb|EGE23963.1| NADH dehydrogenase subunit I [Moraxella catarrhalis CO72]
 gi|326577456|gb|EGE27340.1| NADH dehydrogenase subunit I [Moraxella catarrhalis O35E]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   C+ CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQ 117

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 118 LTPDFELG---------EYDRQ--NLVYEKEHL 139


>gi|313500646|gb|ADR62012.1| D-lactate dehydrogenase (cytochrome) [Pseudomonas putida BIRD-1]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           D+CI+CG CEP CP   +       + +W  I    A Q   I T++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVMWRDIQ---AKQRAGIDTRE 581


>gi|302391035|ref|YP_003826855.1| hypothetical protein Acear_0240 [Acetohalobium arabaticum DSM 5501]
 gi|302203112|gb|ADL11790.1| protein of unknown function DUF362 [Acetohalobium arabaticum DSM
           5501]
          Length = 385

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           ++C  C+   C++ CP     E ++    +L I   EC  C  C+  CP DAI+
Sbjct: 320 QSCTQCR--TCLDSCPQQVIIEQQDGNNTYLEIDESECSKCLCCQEVCPFDAIE 371


>gi|226940402|ref|YP_002795476.1| tetrathionate reductase subunit B [Laribacter hongkongensis HLHK9]
 gi|226715329|gb|ACO74467.1| putative tetrathionate reductase subunit B [Laribacter
           hongkongensis HLHK9]
          Length = 239

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           TY++   C  C +  C+ VCPV   F + +  + +  + C+ C  C   CP DA  I  D
Sbjct: 88  TYMLPRLCNHCANPPCIPVCPVGATFQQADGTVVVDGERCVGCAYCVQACPYDARFINHD 147

Query: 59  T 59
           T
Sbjct: 148 T 148


>gi|223038486|ref|ZP_03608780.1| ubiquinol CytoChrome c oxidoreductase, cytochrome b subunit
           [Campylobacter rectus RM3267]
 gi|222880343|gb|EEF15430.1| ubiquinol CytoChrome c oxidoreductase, cytochrome b subunit
           [Campylobacter rectus RM3267]
          Length = 193

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           +T +C  C    C++VCPV  + + EN +   +H D+CI CG C   CP  +I
Sbjct: 65  ITHSCHHCDEPACMDVCPVGAYIKLENGIVQPLH-DKCIGCGYCIVACPYGSI 116


>gi|150375766|ref|YP_001312362.1| NADH-quinone oxidoreductase subunit I [Sinorhizobium medicae
           WSM419]
 gi|150030313|gb|ABR62429.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419]
          Length = 211

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C ++CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 90  KCVACEL--CAQICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 145


>gi|170019234|ref|YP_001724188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Escherichia coli ATCC 8739]
 gi|169754162|gb|ACA76861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli ATCC 8739]
 gi|309702761|emb|CBJ02090.1| hydrogenase-4 component A [Escherichia coli ETEC H10407]
 gi|320200042|gb|EFW74631.1| Hydrogenase-4 component A [Escherichia coli EC4100B]
 gi|323941262|gb|EGB37447.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|332344300|gb|AEE57634.1| hydrogenase-4, subunit A HyfA [Escherichia coli UMNK88]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|146312467|ref|YP_001177541.1| NADH dehydrogenase subunit I [Enterobacter sp. 638]
 gi|145319343|gb|ABP61490.1| NADH dehydrogenase subunit I [Enterobacter sp. 638]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|15599966|ref|NP_253460.1| ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|254244327|ref|ZP_04937649.1| hypothetical protein PA2G_05180 [Pseudomonas aeruginosa 2192]
 gi|9951036|gb|AAG08158.1|AE004890_11 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|126197705|gb|EAZ61768.1| hypothetical protein PA2G_05180 [Pseudomonas aeruginosa 2192]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + LW  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAK 572


>gi|323967925|gb|EGB63337.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327252131|gb|EGE63803.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|303257094|ref|ZP_07343108.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|331000953|ref|ZP_08324590.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|302860585|gb|EFL83662.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|329569912|gb|EGG51669.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 211

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 10  ILCKHTD---CVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C+H D   C+ VCP    Y+G    + +   +CI CG C   CP  A K +       
Sbjct: 54  VSCQHCDNPACLPVCPAKAIYKGPHGEVLVDQSKCISCGACAMACPYGAPKFNRSGKTSY 113

Query: 66  W 66
           W
Sbjct: 114 W 114


>gi|281601885|gb|ADA74869.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|237712108|ref|ZP_04542589.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|229453429|gb|EEO59150.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
          Length = 315

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +P +
Sbjct: 223 SCIGCGK--CVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 64  EL 65
           E+
Sbjct: 281 EV 282


>gi|221067205|ref|ZP_03543310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|220712228|gb|EED67596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
          Length = 235

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 89  LCNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDA 136


>gi|218893867|ref|YP_002442736.1| putative ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|218774095|emb|CAW29911.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + LW  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAK 572


>gi|162452981|ref|YP_001615348.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
 gi|161163563|emb|CAN94868.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 300

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +   C  C +  CV+VCPV   + E +  +A+  + CI C  CE  CP  A +
Sbjct: 149 YYLPVQCQQCDNAPCVKVCPVQATWKEPDGIVAVDYNWCIGCRYCEAACPYHARR 203


>gi|107103869|ref|ZP_01367787.1| hypothetical protein PaerPA_01004940 [Pseudomonas aeruginosa PACS2]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + LW  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAK 572


>gi|254238494|ref|ZP_04931817.1| hypothetical protein PACG_04643 [Pseudomonas aeruginosa C3719]
 gi|126170425|gb|EAZ55936.1| hypothetical protein PACG_04643 [Pseudomonas aeruginosa C3719]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + LW  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAK 572


>gi|116052919|ref|YP_793236.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588140|gb|ABJ14155.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + LW  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAK 572


>gi|15802828|ref|NP_288855.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 EDL933]
 gi|15832419|ref|NP_311192.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. Sakai]
 gi|16130216|ref|NP_416784.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113653|ref|NP_708163.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 301]
 gi|26248668|ref|NP_754708.1| NADH dehydrogenase subunit I [Escherichia coli CFT073]
 gi|30063707|ref|NP_837878.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 2457T]
 gi|82544759|ref|YP_408706.1| NADH dehydrogenase subunit I [Shigella boydii Sb227]
 gi|89109099|ref|AP_002879.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. W3110]
 gi|91211573|ref|YP_541559.1| NADH dehydrogenase subunit I [Escherichia coli UTI89]
 gi|110642485|ref|YP_670215.1| NADH dehydrogenase subunit I [Escherichia coli 536]
 gi|110806244|ref|YP_689764.1| NADH dehydrogenase subunit I [Shigella flexneri 5 str. 8401]
 gi|117624470|ref|YP_853383.1| NADH dehydrogenase subunit I [Escherichia coli APEC O1]
 gi|157157555|ref|YP_001463624.1| NADH dehydrogenase subunit I [Escherichia coli E24377A]
 gi|157161769|ref|YP_001459087.1| NADH dehydrogenase subunit I [Escherichia coli HS]
 gi|168748130|ref|ZP_02773152.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755033|ref|ZP_02780040.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761280|ref|ZP_02786287.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767907|ref|ZP_02792914.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772993|ref|ZP_02798000.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780136|ref|ZP_02805143.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787188|ref|ZP_02812195.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798451|ref|ZP_02823458.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019410|ref|YP_001724364.1| NADH dehydrogenase subunit I [Escherichia coli ATCC 8739]
 gi|170081898|ref|YP_001731218.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681076|ref|YP_001744479.1| NADH dehydrogenase subunit I [Escherichia coli SMS-3-5]
 gi|170767587|ref|ZP_02902040.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii
           TW07627]
 gi|187731669|ref|YP_001881102.1| NADH dehydrogenase subunit I [Shigella boydii CDC 3083-94]
 gi|188493684|ref|ZP_03000954.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638]
 gi|191166474|ref|ZP_03028304.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A]
 gi|191170159|ref|ZP_03031713.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11]
 gi|193062235|ref|ZP_03043330.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22]
 gi|193068159|ref|ZP_03049123.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019]
 gi|194427176|ref|ZP_03059727.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171]
 gi|194433333|ref|ZP_03065613.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012]
 gi|194436354|ref|ZP_03068456.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1]
 gi|195935658|ref|ZP_03081040.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. EC4024]
 gi|208805658|ref|ZP_03247995.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208814081|ref|ZP_03255410.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208818598|ref|ZP_03258918.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209399174|ref|YP_002271690.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919729|ref|YP_002293813.1| NADH dehydrogenase subunit I [Escherichia coli SE11]
 gi|215487494|ref|YP_002329925.1| NADH dehydrogenase subunit I [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326746|ref|ZP_03442829.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548270|ref|YP_002382061.1| NADH dehydrogenase subunit I [Escherichia fergusonii ATCC 35469]
 gi|218554837|ref|YP_002387750.1| NADH dehydrogenase subunit I [Escherichia coli IAI1]
 gi|218559194|ref|YP_002392107.1| NADH dehydrogenase subunit I [Escherichia coli S88]
 gi|218690441|ref|YP_002398653.1| NADH dehydrogenase subunit I [Escherichia coli ED1a]
 gi|218695880|ref|YP_002403547.1| NADH dehydrogenase subunit I [Escherichia coli 55989]
 gi|218700755|ref|YP_002408384.1| NADH dehydrogenase subunit I [Escherichia coli IAI39]
 gi|218705811|ref|YP_002413330.1| NADH dehydrogenase subunit I [Escherichia coli UMN026]
 gi|227887337|ref|ZP_04005142.1| NADH dehydrogenase subunit I [Escherichia coli 83972]
 gi|237704755|ref|ZP_04535236.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901456|ref|YP_002927252.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952]
 gi|253772797|ref|YP_003035628.1| NADH dehydrogenase subunit I [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162290|ref|YP_003045398.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606]
 gi|254794173|ref|YP_003079010.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017563|ref|ZP_05431428.1| NADH dehydrogenase subunit I [Shigella sp. D9]
 gi|256022035|ref|ZP_05435900.1| NADH dehydrogenase subunit I [Escherichia sp. 4_1_40B]
 gi|260844868|ref|YP_003222646.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2
           str. 12009]
 gi|260856325|ref|YP_003230216.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11
           str. 11368]
 gi|260869004|ref|YP_003235406.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H-
           str. 11128]
 gi|261223265|ref|ZP_05937546.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259185|ref|ZP_05951718.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283522|ref|YP_003500340.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405747|ref|ZP_06649739.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412]
 gi|293410641|ref|ZP_06654217.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415574|ref|ZP_06658217.1| NADH dehydrogenase I subunit I [Escherichia coli B185]
 gi|293446618|ref|ZP_06663040.1| NADH dehydrogenase I subunit I [Escherichia coli B088]
 gi|297518346|ref|ZP_06936732.1| NADH dehydrogenase subunit I [Escherichia coli OP50]
 gi|298381430|ref|ZP_06991029.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302]
 gi|300818119|ref|ZP_07098331.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1]
 gi|300822152|ref|ZP_07102294.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7]
 gi|300896955|ref|ZP_07115436.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1]
 gi|300903666|ref|ZP_07121582.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1]
 gi|300918554|ref|ZP_07135144.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1]
 gi|300924540|ref|ZP_07140504.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1]
 gi|300931366|ref|ZP_07146697.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1]
 gi|300936845|ref|ZP_07151734.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1]
 gi|300948575|ref|ZP_07162668.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1]
 gi|300956459|ref|ZP_07168748.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1]
 gi|300981077|ref|ZP_07175349.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1]
 gi|300983376|ref|ZP_07176560.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1]
 gi|301024079|ref|ZP_07187793.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1]
 gi|301026951|ref|ZP_07190344.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1]
 gi|301049034|ref|ZP_07196019.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1]
 gi|301303260|ref|ZP_07209385.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1]
 gi|301328773|ref|ZP_07221821.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1]
 gi|301647622|ref|ZP_07247418.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1]
 gi|306814608|ref|ZP_07448770.1| NADH dehydrogenase subunit I [Escherichia coli NC101]
 gi|307138945|ref|ZP_07498301.1| NADH dehydrogenase subunit I [Escherichia coli H736]
 gi|307311159|ref|ZP_07590803.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W]
 gi|309793160|ref|ZP_07687588.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7]
 gi|312973460|ref|ZP_07787632.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1827-70]
 gi|331642919|ref|ZP_08344054.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736]
 gi|331647936|ref|ZP_08349028.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605]
 gi|331653723|ref|ZP_08354724.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718]
 gi|331663795|ref|ZP_08364705.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143]
 gi|331668979|ref|ZP_08369827.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271]
 gi|331673786|ref|ZP_08374549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280]
 gi|331678227|ref|ZP_08378902.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591]
 gi|331683953|ref|ZP_08384549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299]
 gi|332278573|ref|ZP_08390986.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9]
 gi|84028753|sp|P0AFD8|NUOI_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028754|sp|P0AFD7|NUOI_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028755|sp|P0AFD6|NUOI_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028756|sp|P0AFD9|NUOI_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|110287772|sp|Q31YI0|NUOI_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502527|sp|Q1R9D6|NUOI_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123147879|sp|Q0TFG5|NUOI_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123342668|sp|Q0T2K6|NUOI_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633517|sp|A1ADC9|NUOI_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|12516631|gb|AAG57410.1|AE005460_4 NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. EDL933]
 gi|26109073|gb|AAN81276.1|AE016763_235 NADH dehydrogenase I chain I [Escherichia coli CFT073]
 gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. MG1655]
 gi|13362635|dbj|BAB36588.1| NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. Sakai]
 gi|24052717|gb|AAN43870.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 301]
 gi|30041962|gb|AAP17688.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 2457T]
 gi|81246170|gb|ABB66878.1| NADH dehydrogenase I chain I [Shigella boydii Sb227]
 gi|85675342|dbj|BAA16109.2| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K12
           substr. W3110]
 gi|91073147|gb|ABE08028.1| NADH dehydrogenase I chain I [Escherichia coli UTI89]
 gi|110344077|gb|ABG70314.1| NADH dehydrogenase I chain I [Escherichia coli 536]
 gi|110615792|gb|ABF04459.1| NADH dehydrogenase I chain I [Shigella flexneri 5 str. 8401]
 gi|115513594|gb|ABJ01669.1| NADH dehydrogenase I chain I [Escherichia coli APEC O1]
 gi|157067449|gb|ABV06704.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli HS]
 gi|157079585|gb|ABV19293.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E24377A]
 gi|169754338|gb|ACA77037.1| NADH-quinone oxidoreductase, chain I [Escherichia coli ATCC 8739]
 gi|169889733|gb|ACB03440.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123921|gb|EDS92852.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii
           TW07627]
 gi|170518794|gb|ACB16972.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli SMS-3-5]
 gi|187428661|gb|ACD07935.1| NADH-quinone oxidoreductase, I subunit [Shigella boydii CDC
           3083-94]
 gi|187771242|gb|EDU35086.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017199|gb|EDU55321.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188488883|gb|EDU63986.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638]
 gi|189002016|gb|EDU71002.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357566|gb|EDU75985.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362978|gb|EDU81397.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368249|gb|EDU86665.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372827|gb|EDU91243.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189379037|gb|EDU97453.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903434|gb|EDV63153.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A]
 gi|190909675|gb|EDV69260.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11]
 gi|192931901|gb|EDV84500.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22]
 gi|192958438|gb|EDV88877.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019]
 gi|194414797|gb|EDX31068.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171]
 gi|194418427|gb|EDX34516.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012]
 gi|194425082|gb|EDX41067.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1]
 gi|208725459|gb|EDZ75060.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208735358|gb|EDZ84045.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208738721|gb|EDZ86403.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160574|gb|ACI38007.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765138|gb|ACI80881.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765140|gb|ACI80882.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765142|gb|ACI80883.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765144|gb|ACI80884.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765146|gb|ACI80885.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209912988|dbj|BAG78062.1| NADH dehydrogenase I chain I [Escherichia coli SE11]
 gi|215265566|emb|CAS09969.1| NADH: ubiquinone oxidoreductase, chain I [Escherichia coli O127:H6
           str. E2348/69]
 gi|217319113|gb|EEC27538.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352612|emb|CAU98393.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli 55989]
 gi|218355811|emb|CAQ88424.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia fergusonii
           ATCC 35469]
 gi|218361605|emb|CAQ99197.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI1]
 gi|218365963|emb|CAR03707.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli S88]
 gi|218370741|emb|CAR18554.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI39]
 gi|218428005|emb|CAR08776.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli ED1a]
 gi|218432908|emb|CAR13802.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli UMN026]
 gi|222034037|emb|CAP76778.1| NadH-quinone oxidoreductase subunit I [Escherichia coli LF82]
 gi|226901121|gb|EEH87380.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835687|gb|EEJ46153.1| NADH dehydrogenase subunit I [Escherichia coli 83972]
 gi|238861872|gb|ACR63870.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952]
 gi|242377914|emb|CAQ32683.1| NADH:ubiquinone oxidoreductase, chain I, subunit of connecting
           fragment of NADH dehydrogenase I and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323841|gb|ACT28443.1| NADH-quinone oxidoreductase, chain I [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974191|gb|ACT39862.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606]
 gi|253978358|gb|ACT44028.1| NADH dehydrogenase subunit I [Escherichia coli BL21(DE3)]
 gi|254593573|gb|ACT72934.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. TW14359]
 gi|257754974|dbj|BAI26476.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11
           str. 11368]
 gi|257760015|dbj|BAI31512.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2
           str. 12009]
 gi|257765360|dbj|BAI36855.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H-
           str. 11128]
 gi|260448626|gb|ACX39048.1| NADH-quinone oxidoreductase, chain I [Escherichia coli DH1]
 gi|281179368|dbj|BAI55698.1| NADH dehydrogenase I chain I [Escherichia coli SE15]
 gi|281601722|gb|ADA74706.1| NADH-quinone oxidoreductase subunit I [Shigella flexneri 2002017]
 gi|284922269|emb|CBG35354.1| NADH-quinone oxidoreductase subunit I [Escherichia coli 042]
 gi|290763395|gb|ADD57356.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323448|gb|EFE62876.1| NADH dehydrogenase I subunit I [Escherichia coli B088]
 gi|291427955|gb|EFF00982.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412]
 gi|291433222|gb|EFF06201.1| NADH dehydrogenase I subunit I [Escherichia coli B185]
 gi|291471109|gb|EFF13593.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489898|gb|ADE88654.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli IHE3034]
 gi|298278872|gb|EFI20386.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302]
 gi|299879498|gb|EFI87709.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1]
 gi|300299143|gb|EFJ55528.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1]
 gi|300307690|gb|EFJ62210.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1]
 gi|300316729|gb|EFJ66513.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1]
 gi|300359223|gb|EFJ75093.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1]
 gi|300396735|gb|EFJ80273.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1]
 gi|300404322|gb|EFJ87860.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1]
 gi|300408542|gb|EFJ92080.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1]
 gi|300414289|gb|EFJ97599.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1]
 gi|300419258|gb|EFK02569.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1]
 gi|300451923|gb|EFK15543.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1]
 gi|300458032|gb|EFK21525.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1]
 gi|300460828|gb|EFK24321.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1]
 gi|300525282|gb|EFK46351.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7]
 gi|300529263|gb|EFK50325.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1]
 gi|300841434|gb|EFK69194.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1]
 gi|300844835|gb|EFK72595.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1]
 gi|301074249|gb|EFK89055.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1]
 gi|305852002|gb|EFM52454.1| NADH dehydrogenase subunit I [Escherichia coli NC101]
 gi|306908665|gb|EFN39162.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W]
 gi|307554343|gb|ADN47118.1| NADH dehydrogenase I chain I [Escherichia coli ABU 83972]
 gi|307626183|gb|ADN70487.1| NADH dehydrogenase subunit I [Escherichia coli UM146]
 gi|308123446|gb|EFO60708.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7]
 gi|309702593|emb|CBJ01921.1| NADH-quinone oxidoreductase subunit I [Escherichia coli ETEC
           H10407]
 gi|310332055|gb|EFP99290.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1827-70]
 gi|312946899|gb|ADR27726.1| NADH dehydrogenase subunit I [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651104|gb|EFS15503.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 2a str. 2457T]
 gi|315061573|gb|ADT75900.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli W]
 gi|315136915|dbj|BAJ44074.1| NADH-quinone oxidoreductase subunit I [Escherichia coli DH1]
 gi|315255215|gb|EFU35183.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 85-1]
 gi|315285919|gb|EFU45357.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 110-3]
 gi|315292246|gb|EFU51598.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 153-1]
 gi|315298120|gb|EFU57389.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 16-3]
 gi|320177163|gb|EFW52175.1| NADH-ubiquinone oxidoreductase chain I [Shigella dysenteriae CDC
           74-1112]
 gi|320178746|gb|EFW53709.1| NADH-ubiquinone oxidoreductase chain I [Shigella boydii ATCC 9905]
 gi|320183376|gb|EFW58228.1| NADH-ubiquinone oxidoreductase chain I [Shigella flexneri CDC
           796-83]
 gi|320192098|gb|EFW66743.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. EC1212]
 gi|320196148|gb|EFW70772.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli WV_060327]
 gi|320199869|gb|EFW74458.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli EC4100B]
 gi|320641108|gb|EFX10587.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. G5101]
 gi|320646496|gb|EFX15415.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. 493-89]
 gi|320651593|gb|EFX19973.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. H 2687]
 gi|320657345|gb|EFX25147.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663047|gb|EFX30364.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667865|gb|EFX34773.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. LSU-61]
 gi|323156431|gb|EFZ42586.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli EPECa14]
 gi|323161615|gb|EFZ47500.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli E128010]
 gi|323171962|gb|EFZ57606.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli LT-68]
 gi|323176794|gb|EFZ62384.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1180]
 gi|323184400|gb|EFZ69776.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1357]
 gi|323187994|gb|EFZ73289.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli RN587/1]
 gi|323377847|gb|ADX50115.1| NADH-quinone oxidoreductase, chain I [Escherichia coli KO11]
 gi|323936571|gb|EGB32858.1| NADH-quinone oxidoreductase [Escherichia coli E1520]
 gi|323941022|gb|EGB37209.1| NADH-quinone oxidoreductase [Escherichia coli E482]
 gi|323944794|gb|EGB40860.1| NADH-quinone oxidoreductase [Escherichia coli H120]
 gi|323952074|gb|EGB47948.1| NADH-quinone oxidoreductase [Escherichia coli H252]
 gi|323956047|gb|EGB51800.1| NADH-quinone oxidoreductase [Escherichia coli H263]
 gi|323961464|gb|EGB57074.1| NADH-quinone oxidoreductase [Escherichia coli H489]
 gi|323967722|gb|EGB63134.1| NADH-quinone oxidoreductase [Escherichia coli M863]
 gi|323973014|gb|EGB68208.1| NADH-quinone oxidoreductase [Escherichia coli TA007]
 gi|323977518|gb|EGB72604.1| NADH-quinone oxidoreductase [Escherichia coli TW10509]
 gi|324006669|gb|EGB75888.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 57-2]
 gi|324013179|gb|EGB82398.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 60-1]
 gi|324020877|gb|EGB90096.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 117-3]
 gi|324112813|gb|EGC06789.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253]
 gi|324117841|gb|EGC11740.1| NADH-quinone oxidoreductase [Escherichia coli E1167]
 gi|325496684|gb|EGC94543.1| NADH dehydrogenase subunit I [Escherichia fergusonii ECD227]
 gi|326339632|gb|EGD63443.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. 1125]
 gi|326344094|gb|EGD67855.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. 1044]
 gi|327252551|gb|EGE64210.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli STEC_7v]
 gi|330912106|gb|EGH40616.1| NADH-ubiquinone oxidoreductase chain 1 [Escherichia coli AA86]
 gi|331039717|gb|EGI11937.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736]
 gi|331043660|gb|EGI15798.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605]
 gi|331048572|gb|EGI20648.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718]
 gi|331059594|gb|EGI31571.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143]
 gi|331064173|gb|EGI36084.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271]
 gi|331069059|gb|EGI40451.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280]
 gi|331074687|gb|EGI46007.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591]
 gi|331078905|gb|EGI50107.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299]
 gi|332088411|gb|EGI93529.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           boydii 5216-82]
 gi|332090608|gb|EGI95704.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 155-74]
 gi|332093681|gb|EGI98739.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           boydii 3594-74]
 gi|332100925|gb|EGJ04271.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9]
 gi|332344062|gb|AEE57396.1| NADH-quinone oxidoreductase, chain I [Escherichia coli UMNK88]
 gi|332755330|gb|EGJ85694.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-671]
 gi|332756322|gb|EGJ86673.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 2747-71]
 gi|332766100|gb|EGJ96310.1| nuoI [Shigella flexneri 2930-71]
 gi|333001425|gb|EGK20993.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri VA-6]
 gi|333001967|gb|EGK21533.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-218]
 gi|333002648|gb|EGK22208.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-272]
 gi|333016230|gb|EGK35561.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-304]
 gi|333016532|gb|EGK35862.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-227]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|332981823|ref|YP_004463264.1| Fe-S cluster domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332699501|gb|AEE96442.1| Fe-S cluster domain protein [Mahella australiensis 50-1 BON]
          Length = 434

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C  C  T+C++ CP +          I  + CIDCG C   CP  A    T+P
Sbjct: 14 EKCRGC--TNCIKRCPTEAIRVRAGKANITAERCIDCGECIRVCPYHAKLAVTDP 66


>gi|330503264|ref|YP_004380133.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01]
 gi|328917550|gb|AEB58381.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 118 LTPDFEMG 125


>gi|301058593|ref|ZP_07199598.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium
           NaphS2]
 gi|300447325|gb|EFK11085.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium
           NaphS2]
          Length = 171

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
            E C+ C    C  VCP DC         +G ++ A   I+   CI CG CE  CP  AI
Sbjct: 48  AERCVACYL--CSAVCPTDCIAVQGAVAEDGRHYAASFRINFARCIYCGFCEEACPTLAI 105

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 106 QLSPDFEMG 114


>gi|296391599|ref|ZP_06881074.1| ferredoxin [Pseudomonas aeruginosa PAb1]
          Length = 938

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + LW  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVLWRDIQAK 572


>gi|295097941|emb|CBK87031.1| hypothetical protein ENC_37430 [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 291

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 21/110 (19%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK------------------PD 58
           C +VCPV  F   ++ +++    CI+CG C   CP +AI                    D
Sbjct: 29  CADVCPVQAFSFTDSSVSVDDSRCIECGDCLFVCPAEAITGITPRKRFLCGDTLVEPFTD 88

Query: 59  TEPGLELWLKINSEYATQWPNITTKK--ESLPSAAKMD-GVKQKYEKYFS 105
             PG+   L  +++Y  ++ +I  ++  + L + A+++  ++++ E  ++
Sbjct: 89  RAPGVNELLLWHAQYHVRFISIDAEQNPDWLLAIARLNLALRRRGEAAWA 138


>gi|221126279|ref|XP_002164598.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1399

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7   ENCILCK--HTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +NCI C   H  C +       +E  G+    +  DEC+ C +C   CPV    PDT   
Sbjct: 852 DNCIQCGRCHIACEDTSHQAITFEKDGKRHFEVKEDECVGCNLCVTVCPV----PDTISL 907

Query: 63  LELWLKIN 70
            +L + IN
Sbjct: 908 RDLAVAIN 915


>gi|197285164|ref|YP_002151036.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227355594|ref|ZP_03839989.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
 gi|194682651|emb|CAR42772.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227164390|gb|EEI49279.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
          Length = 208

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +NCI C  T C++ CPVD        +  I  D C  C +C P CP D I
Sbjct: 115 DNCIGC--TKCIQACPVDAIVGATRAMHTIIEDLCTGCDLCVPPCPTDCI 162


>gi|167549680|ref|ZP_02343439.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|198242928|ref|YP_002216391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937444|gb|ACH74777.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205325199|gb|EDZ13038.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|326624142|gb|EGE30487.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|156933129|ref|YP_001437045.1| NADH dehydrogenase subunit I [Cronobacter sakazakii ATCC BAA-894]
 gi|226737391|sp|A7MPB5|NUOI_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156531383|gb|ABU76209.1| hypothetical protein ESA_00939 [Cronobacter sakazakii ATCC BAA-894]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|146307442|ref|YP_001187907.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp]
 gi|145575643|gb|ABP85175.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 118 LTPDFEMG 125


>gi|107103021|ref|ZP_01366939.1| hypothetical protein PaerPA_01004090 [Pseudomonas aeruginosa PACS2]
          Length = 774

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECP 51
           CI C   DC +VCPV        F+    E E  LA +  +CI+CG C   CP
Sbjct: 369 CIRCG--DCAQVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|24112977|ref|NP_707487.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|110805564|ref|YP_689084.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|24051935|gb|AAN43194.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|110615112|gb|ABF03779.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|89896465|ref|YP_519952.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335913|dbj|BAE85508.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 178

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIK 56
           ++ +C+ C    C  VCP   + + E+ L I   D+C+ CG C   CP  A K
Sbjct: 55  LSHSCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACPYQAPK 107


>gi|15598687|ref|NP_252181.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAO1]
 gi|17369004|sp|Q9HYB8|RNFC_PSEAE RecName: Full=Electron transport complex protein rnfC
 gi|9949637|gb|AAG06879.1|AE004770_4 probable ferredoxin [Pseudomonas aeruginosa PAO1]
          Length = 774

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECP 51
           CI C   DC +VCPV        F+    E E  LA +  +CI+CG C   CP
Sbjct: 369 CIRCG--DCAQVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|188495052|ref|ZP_03002322.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|188490251|gb|EDU65354.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYSLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|323977341|gb|EGB72427.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|308271552|emb|CBX28160.1| hypothetical protein N47_G34840 [uncultured Desulfobacterium sp.]
          Length = 58

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
          MT +  + CI C  T C+++CP    + G++  +  + ++CI CG C   CPVDAI 
Sbjct: 1  MTVIDMKICIKC--TGCIDICPESALFLGDDAAIKCNDEKCISCGDCADFCPVDAIS 55


>gi|300922185|ref|ZP_07138322.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300421500|gb|EFK04811.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
          Length = 218

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|299066025|emb|CBJ37206.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum CMR15]
          Length = 736

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           C LC    CV  CP     +      L++    C+ CG+C+  CP DAI
Sbjct: 608 CTLC--MACVSACPSQALRDQAERPVLSMIEHNCVQCGLCDTTCPEDAI 654


>gi|157144788|ref|YP_001452107.1| NADH dehydrogenase subunit I [Citrobacter koseri ATCC BAA-895]
 gi|157081993|gb|ABV11671.1| hypothetical protein CKO_00515 [Citrobacter koseri ATCC BAA-895]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|91227192|ref|ZP_01261651.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01]
 gi|91188720|gb|EAS75008.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01]
          Length = 228

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 141


>gi|329296025|ref|ZP_08253361.1| NADH dehydrogenase subunit I [Plautia stali symbiont]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|323476480|gb|ADX81718.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus HVE10/4]
          Length = 363

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  + +  I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKE 85
           D     E+W +  ++Y     N+   ++
Sbjct: 326 DYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|313904891|ref|ZP_07838263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
 gi|313470324|gb|EFR65654.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
          Length = 170

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 28 EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
               +AI  D CI CG+C+  CP+ AIK D + G
Sbjct: 33 RSRGHVAIDVDGCISCGICQLSCPLGAIKVDKKEG 67


>gi|312963109|ref|ZP_07777594.1| FAD linked oxidase-like protein [Pseudomonas fluorescens WH6]
 gi|311282620|gb|EFQ61216.1| FAD linked oxidase-like protein [Pseudomonas fluorescens WH6]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVIWRDIQAK 572


>gi|218778074|ref|YP_002429392.1| dihydropyrimidine dehydrogenase (NADP(+)) [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759458|gb|ACL01924.1| Dihydropyrimidine dehydrogenase (NADP(+)) [Desulfatibacillum
           alkenivorans AK-01]
          Length = 695

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 16  DCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECP 51
           DCV+ C  D    G + +  ++ D C+ CG CE  CP
Sbjct: 142 DCVKACLFDAISIGPDGYPVVNADNCVGCGACERACP 178


>gi|157377178|ref|YP_001475778.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319552|gb|ABV38650.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 190

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV+VCP    Y GE+  + I  D+C+ C  C   CP  V  + P+T+
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVTIKEDKCVGCMYCVAACPYKVRFVNPETK 114


>gi|157371538|ref|YP_001479527.1| NADH dehydrogenase subunit I [Serratia proteamaculans 568]
 gi|270262807|ref|ZP_06191078.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13]
 gi|157323302|gb|ABV42399.1| NADH-quinone oxidoreductase, chain I [Serratia proteamaculans 568]
 gi|270043491|gb|EFA16584.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13]
          Length = 180

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|229592662|ref|YP_002874781.1| putative FAD-binding oxidoreductase [Pseudomonas fluorescens SBW25]
 gi|229364528|emb|CAY52387.1| putative FAD-binding oxidoreductase [Pseudomonas fluorescens SBW25]
          Length = 936

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVIWRDIQAK 572


>gi|89897072|ref|YP_520559.1| hypothetical protein DSY4326 [Desulfitobacterium hafniense Y51]
 gi|89336520|dbj|BAE86115.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 460

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C   CP        N   I    C++CG+C   CP  AI
Sbjct: 93  YSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAI 145


>gi|14520613|ref|NP_126088.1| electron transport protein [Pyrococcus abyssi GE5]
 gi|5457829|emb|CAB49319.1| Electron transport protein, containing 4Fe-4S binding domain
           [Pyrococcus abyssi GE5]
          Length = 166

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C+  D   C+E CP          L +  +EC  CG C   CP  A+K      + L
Sbjct: 51  VVCRQCDPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVKLHVRTKVAL 109


>gi|323170257|gb|EFZ55910.1| hydrogenase-4 component A [Escherichia coli LT-68]
          Length = 200

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 46 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 93


>gi|322831991|ref|YP_004212018.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602]
 gi|321167192|gb|ADW72891.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|227829378|ref|YP_002831157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|229578177|ref|YP_002836575.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284996746|ref|YP_003418513.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
 gi|227455825|gb|ACP34512.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|228008891|gb|ACP44653.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284444641|gb|ADB86143.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
          Length = 363

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  + +  I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKE 85
           D     E+W +  ++Y     N+   ++
Sbjct: 326 DYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|255690239|ref|ZP_05413914.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
 gi|260624258|gb|EEX47129.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
          Length = 489

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|224371568|ref|YP_002605732.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694285|gb|ACN17568.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 375

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C + CP+D          +  D CI CG+C   CP  AI  + +P
Sbjct: 282 CKKRCPMDAISIKNKRAVLDLDRCIGCGLCVSTCPEKAIHLERKP 326


>gi|212691452|ref|ZP_03299580.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|237726262|ref|ZP_04556743.1| ferredoxin [Bacteroides sp. D4]
 gi|212666062|gb|EEB26634.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|229434788|gb|EEO44865.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
          Length = 315

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +P +
Sbjct: 223 SCIGCGK--CVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 64  EL 65
           E+
Sbjct: 281 EV 282


>gi|170749599|ref|YP_001755859.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656121|gb|ACB25176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C LC    CV  CP     +   +  L      C+ CG+C   CP D I    +     
Sbjct: 523 DCTLC--LACVSACPTHALSDSAEQPLLGFEESLCVQCGLCAATCPEDVITLRPQVDFAA 580

Query: 66  W 66
           W
Sbjct: 581 W 581



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 8/52 (15%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H        T C++VCP        + + I P  C  CG C   CP  A
Sbjct: 272 LCAHSRSRITGCTRCLDVCPTGAIAPAGDTVRIDPYVCAGCGSCAALCPTGA 323


>gi|168208932|ref|ZP_02634557.1| F420H2:quinone oxidoreductase [Clostridium perfringens B str.
          ATCC 3626]
 gi|170712785|gb|EDT24967.1| F420H2:quinone oxidoreductase [Clostridium perfringens B str.
          ATCC 3626]
          Length = 389

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDC----FYEGE-NFLAIHPDECIDCGVCEPECPV 52
          E C +C+   C+ +CP +C    F + E N+  I+  +CIDCG C   CPV
Sbjct: 8  ERCTICQA--CINICPKECIKLDFVKEEFNYPIINKIKCIDCGACYKVCPV 56


>gi|37526279|ref|NP_929623.1| electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785710|emb|CAE14694.1| Electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 210

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  ENCI C  T C++ CPVD        +  I  D C  C +C   CP D I
Sbjct: 109 VAFIDEENCIGC--TKCIQACPVDAIVGATRAMHTIVEDLCTGCDLCVAPCPTDCI 162


>gi|325299905|ref|YP_004259822.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319458|gb|ADY37349.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 297

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P +C  C  CE ECP  AI
Sbjct: 218 TAACIGCGK--CVKVCPFEAITLENNLAYIDPAKCKSCRKCETECPQGAI 265


>gi|325271538|ref|ZP_08138051.1| FAD linked oxidase-like protein [Pseudomonas sp. TJI-51]
 gi|324103313|gb|EGC00647.1| FAD linked oxidase-like protein [Pseudomonas sp. TJI-51]
          Length = 951

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVIWRDIQAK 572


>gi|317492616|ref|ZP_07951043.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919366|gb|EFV40698.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  E C  C  T C   CPV+      +N   I P++CI CGVC  +C  DA+
Sbjct: 541 YIDAEKCKGC--TLCARNCPVNAISGSVKNPHVIDPEKCIKCGVCMEKCKFDAV 592


>gi|296112939|ref|YP_003626877.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4]
 gi|295920633|gb|ADG60984.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4]
          Length = 182

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   C+ CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQ 117

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  N+  +KE L
Sbjct: 118 LTPDFELG---------EYDRQ--NLVYEKEHL 139


>gi|300087813|ref|YP_003758335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527546|gb|ADJ26014.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1119

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 1    MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
            ++ VV ENC  C +  CV+ CP D           E +  +   P  C  CGVC   CP 
Sbjct: 1039 ISQVVDENCDGCAY--CVDPCPYDAISLIEYRKNGETKKTVEADPMRCHGCGVCMATCPK 1096

Query: 53   DAI 55
              I
Sbjct: 1097 QGI 1099


>gi|293373213|ref|ZP_06619575.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631861|gb|EFF50477.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 489

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|291618182|ref|YP_003520924.1| NuoI [Pantoea ananatis LMG 20103]
 gi|291153212|gb|ADD77796.1| NuoI [Pantoea ananatis LMG 20103]
 gi|327394575|dbj|BAK11997.1| NADH-quinone oxidoreductase chain I NuoI [Pantoea ananatis AJ13355]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFELG 123


>gi|222834638|gb|EEE73101.1| predicted protein [Populus trichocarpa]
          Length = 187

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ CG C   CP DA
Sbjct: 61  LCNHCDNPPCVPVCPVQATFQRSDGIVLVDNERCVGCGYCVQACPYDA 108


>gi|119475395|ref|ZP_01615748.1| ferredoxin [marine gamma proteobacterium HTCC2143]
 gi|119451598|gb|EAW32831.1| ferredoxin [marine gamma proteobacterium HTCC2143]
          Length = 85

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T+ CI C    C  VCP +  Y+G+    I P  C +C        C+  CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPVCPNEAIYQGDEIYEIDPALCTECVGHFDEPQCQTVCPVDC 58

Query: 55 IKPD---TEPGLELWLKINSEYATQW 77
          I  D    E  L+L  K     A + 
Sbjct: 59 IPKDPNRQESQLQLLSKYRQLIAAEQ 84


>gi|29347244|ref|NP_810747.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339143|gb|AAO76941.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 105 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 160


>gi|24113810|ref|NP_708320.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30063859|ref|NP_838030.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110806414|ref|YP_689934.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|24052897|gb|AAN44027.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30042114|gb|AAP17840.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110615962|gb|ABF04629.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|313650937|gb|EFS15337.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|332755122|gb|EGJ85487.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332755521|gb|EGJ85885.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332756570|gb|EGJ86921.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332766287|gb|EGJ96497.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71]
 gi|333001869|gb|EGK21435.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333016253|gb|EGK35584.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|57640966|ref|YP_183444.1| putative ATPase RIL [Thermococcus kodakarensis KOD1]
 gi|57159290|dbj|BAD85220.1| predicted ATPase, RNase L inhibitor homolog [Thermococcus
          kodakarensis KOD1]
          Length = 594

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP +AI
Sbjct: 17 CGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 67


>gi|16761246|ref|NP_456863.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765648|ref|NP_461263.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141058|ref|NP_804400.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412782|ref|YP_149857.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180891|ref|YP_217308.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612951|ref|YP_001586916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167994669|ref|ZP_02575760.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229690|ref|ZP_02654748.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237338|ref|ZP_02662396.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242439|ref|ZP_02667371.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261663|ref|ZP_02683636.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465976|ref|ZP_02699846.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817949|ref|ZP_02829949.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446441|ref|YP_002041581.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451795|ref|YP_002046374.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469216|ref|ZP_03075200.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738262|ref|YP_002115390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249761|ref|YP_002147279.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263656|ref|ZP_03163730.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361716|ref|YP_002141352.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200386777|ref|ZP_03213389.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929042|ref|ZP_03220185.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353436|ref|YP_002227237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857739|ref|YP_002244390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213028651|ref|ZP_03343098.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052937|ref|ZP_03345815.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213419033|ref|ZP_03352099.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427017|ref|ZP_03359767.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580776|ref|ZP_03362602.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612295|ref|ZP_03370121.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|224583193|ref|YP_002636991.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912400|ref|ZP_04656237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75505657|sp|Q57M35|NUOI_SALCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81678159|sp|Q5PN58|NUOI_SALPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81706883|sp|Q7CQ51|NUOI_SALTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81766252|sp|Q8XFD5|NUOI_SALTI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282717|pir||AG0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420862|gb|AAL21222.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503545|emb|CAD07553.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136684|gb|AAO68249.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127039|gb|AAV76545.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128524|gb|AAX66227.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362315|gb|ABX66083.1| hypothetical protein SPAB_00657 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405104|gb|ACF65326.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410099|gb|ACF70318.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455580|gb|EDX44419.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713764|gb|ACF92985.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631186|gb|EDX49746.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093192|emb|CAR58636.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213464|gb|ACH50861.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241911|gb|EDY24531.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289600|gb|EDY28963.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603875|gb|EDZ02420.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321586|gb|EDZ06785.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273217|emb|CAR38180.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327493|gb|EDZ14257.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335833|gb|EDZ22597.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338317|gb|EDZ25081.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345035|gb|EDZ31799.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349680|gb|EDZ36311.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709542|emb|CAR33887.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467720|gb|ACN45550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247527|emb|CBG25354.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994416|gb|ACY89301.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158879|emb|CBW18392.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913312|dbj|BAJ37286.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086755|emb|CBY96527.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222977|gb|EFX48048.1| NADH-ubiquinone oxidoreductase chain I [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617067|gb|EFY13973.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617627|gb|EFY14526.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624743|gb|EFY21572.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630292|gb|EFY27062.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634473|gb|EFY31206.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639183|gb|EFY35875.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640046|gb|EFY36713.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645733|gb|EFY42257.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651508|gb|EFY47883.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656068|gb|EFY52367.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659421|gb|EFY55668.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665881|gb|EFY62064.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669879|gb|EFY66020.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673865|gb|EFY69962.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678623|gb|EFY74679.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683581|gb|EFY79595.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687657|gb|EFY83627.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715370|gb|EFZ06941.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323193509|gb|EFZ78714.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198414|gb|EFZ83516.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201928|gb|EFZ86990.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208534|gb|EFZ93473.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209757|gb|EFZ94681.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218293|gb|EGA03003.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222949|gb|EGA07298.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227385|gb|EGA11550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232288|gb|EGA16391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235678|gb|EGA19762.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241161|gb|EGA25197.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244903|gb|EGA28905.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250022|gb|EGA33916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251634|gb|EGA35502.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254945|gb|EGA38736.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260325|gb|EGA43944.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268099|gb|EGA51576.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270808|gb|EGA54246.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989254|gb|AEF08237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|322378418|ref|ZP_08052872.1| ferredoxin [Helicobacter suis HS1]
 gi|322380977|ref|ZP_08055039.1| ferredoxin [Helicobacter suis HS5]
 gi|321146595|gb|EFX41433.1| ferredoxin [Helicobacter suis HS5]
 gi|321149174|gb|EFX43620.1| ferredoxin [Helicobacter suis HS1]
          Length = 97

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP D   + +   +I PD C +C        C   CPVDA
Sbjct: 15 MSLLVNQECIACDA--CREECPTDAIDQDDPIYSIDPDRCTECVGYSDEPGCVSVCPVDA 72

Query: 55 IKPD---TEPGLELWLK 68
          I  D   TE   EL  K
Sbjct: 73 IILDPHNTESQEELQYK 89


>gi|302343816|ref|YP_003808345.1| electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
          baarsii DSM 2075]
 gi|301640429|gb|ADK85751.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
          baarsii DSM 2075]
          Length = 405

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  ++ +N C  C    CV+ CP     E  + +A+  D C  CG C   CP  AI  D 
Sbjct: 1  MALIIDKNLCTGCG--SCVDACPFGAM-ELHDGVAVAGDGCTLCGACVDACPESAIGLDE 57

Query: 60 EPG 62
            G
Sbjct: 58 PAG 60


>gi|300957169|ref|ZP_07169404.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300316013|gb|EFJ65797.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
          Length = 213

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|260173332|ref|ZP_05759744.1| putative hydrogenase [Bacteroides sp. D2]
 gi|315921605|ref|ZP_07917845.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695480|gb|EFS32315.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 489

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|254477029|ref|ZP_05090415.1| iron-sulfur cluster-binding protein [Ruegeria sp. R11]
 gi|214031272|gb|EEB72107.1| iron-sulfur cluster-binding protein [Ruegeria sp. R11]
          Length = 237

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++   CI CG+C   CP  A + D   G+
Sbjct: 59  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESNCIGCGLCAWSCPYGARELDLAEGV 117


>gi|153824794|ref|ZP_01977461.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
 gi|149741512|gb|EDM55542.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
          Length = 553

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|146342337|ref|YP_001207385.1| putative 4Fe-4S ferredoxin, fixG-like protein [Bradyrhizobium sp.
           ORS278]
 gi|146195143|emb|CAL79168.1| Putative 4Fe-4S ferredoxin, fixG-like protein [Bradyrhizobium sp.
           ORS278]
          Length = 497

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C    CV VCP+     +G NF       CI+CG+C   C     K D   GL   
Sbjct: 292 DCVDCGA--CVAVCPIGIDIRQGPNF------ACINCGLCVDACDGVMAKLDRPRGL--- 340

Query: 67  LKINSEYATQWPNITTKKESLPSAAKM 93
             I+ E    W NI   +   P  +++
Sbjct: 341 --IDYE---SWTNIERGRAGQPRVSRL 362


>gi|331656967|ref|ZP_08357929.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
 gi|331055215|gb|EGI27224.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
            TY ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FTYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|307130992|ref|YP_003883008.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
 gi|306528521|gb|ADM98451.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
          Length = 196

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + +V  +NCI C  T C++ CPVD        +  +  D C  C +C P CP D I+
Sbjct: 108 VAWVDEDNCIGC--TKCIQACPVDAIVGTTRAVHTVIRDLCTGCNLCVPPCPTDCIE 162


>gi|296133064|ref|YP_003640311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031642|gb|ADG82410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 368

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C  T C   CP D     E    I  ++CI CG C   CP  AI
Sbjct: 190 VDADKCIGC--TKCTHWCPADAITVNEKVARISEEKCIGCGECTVTCPAHAI 239


>gi|262402832|ref|ZP_06079393.1| ferredoxin [Vibrio sp. RC586]
 gi|262351614|gb|EEZ00747.1| ferredoxin [Vibrio sp. RC586]
          Length = 46

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            +++++N+E A  WPN+T  K ++  AAK DGV  K 
Sbjct: 5   RIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKL 41


>gi|260913682|ref|ZP_05920158.1| hydrogenase-4 component A [Pasteurella dagmatis ATCC 43325]
 gi|260632221|gb|EEX50396.1| hydrogenase-4 component A [Pasteurella dagmatis ATCC 43325]
          Length = 200

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          ++C H D   C  VCPV+   + +  + ++   CI C +C   CP  AI P
Sbjct: 49 LVCHHCDDAPCATVCPVNAIKQVDRTIQLNESLCIGCKLCAIACPFGAITP 99


>gi|229520552|ref|ZP_04409976.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
 gi|229342376|gb|EEO07370.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
          Length = 553

 Score = 35.0 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|74318034|ref|YP_315774.1| electron transport complex protein RnfB [Thiobacillus denitrificans
           ATCC 25259]
 gi|123731760|sp|Q3SHB7|RNFB_THIDA RecName: Full=Electron transport complex protein rnfB
 gi|74057529|gb|AAZ97969.1| Electron transport complex, RnfABCDGE type, B subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 188

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD      +    I  DEC  C +C   CPVD I
Sbjct: 105 VAFIDEQTCIGC--TLCIQACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCI 158


>gi|15789981|ref|NP_279805.1| HmoA [Halobacterium sp. NRC-1]
 gi|169235702|ref|YP_001688902.1| dimethylsulfoxide reductase subunit B (electron transfer protein)
           [Halobacterium salinarum R1]
 gi|10580399|gb|AAG19285.1| molybdopterin oxidoreductase [Halobacterium sp. NRC-1]
 gi|167726768|emb|CAP13554.1| dimethylsulfoxide reductase subunit B (electron transfer protein)
           [Halobacterium salinarum R1]
          Length = 262

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDA 54
           MTY  T  C  C++  CV+VCPV+  Y   +  + I  D+C+ C  C   CP +A
Sbjct: 64  MTYQPTA-CQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCMGCRYCMAACPYNA 117


>gi|18313641|ref|NP_560308.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18161189|gb|AAL64490.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 188

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 10  ILCKHTD---CVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+H D   CV VCP    Y+  +  + + P+ CI C  C   CP +A   D + GL
Sbjct: 61  VQCQHCDNAPCVAVCPTGASYKDVDGLVKMRPELCIGCKYCMVACPYEARWLDEDTGL 118


>gi|21229366|ref|NP_635288.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|20907953|gb|AAM32960.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1]
          Length = 296

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ ENC+ CK   C + C +      E+  +I  ++CI CG C   C  DA++ +
Sbjct: 166 VLEENCVGCKR--CEKACKMGAIKVIEDKASIDTEKCILCGACIAACRKDALRAE 218


>gi|194432127|ref|ZP_03064416.1| hydrogenase-4 component A [Shigella dysenteriae 1012]
 gi|194419656|gb|EDX35736.1| hydrogenase-4 component A [Shigella dysenteriae 1012]
 gi|332087922|gb|EGI93047.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|188495190|ref|ZP_03002460.1| hydrogenase-4 component A [Escherichia coli 53638]
 gi|188490389|gb|EDU65492.1| hydrogenase-4 component A [Escherichia coli 53638]
          Length = 200

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|303243536|ref|ZP_07329878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486097|gb|EFL49019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 386

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 14/60 (23%)

Query: 8   NCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDE-------CIDCGVCEPECPVDAI 55
           +C+LC+   CV+VCP++        E        PDE       C+ CGVC PECPV+AI
Sbjct: 90  HCVLCQK--CVDVCPIEIISIPGLVEKPKKQITIPDEPIAVMDNCVGCGVCVPECPVEAI 147


>gi|288931383|ref|YP_003435443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893631|gb|ADC65168.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 187

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    C++VCPV+  ++ E    + +  D CI CG C   CP  A
Sbjct: 55  QCLHCNDPPCMKVCPVNAIWKREEDGIVLVKKDICIGCGYCASACPFGA 103


>gi|237728156|ref|ZP_04558637.1| cytochrome c-type biogenesis protein [Citrobacter sp. 30_2]
 gi|226910167|gb|EEH96085.1| cytochrome c-type biogenesis protein [Citrobacter sp. 30_2]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|254037077|ref|ZP_04871154.1| formate-dependent nitrite reductase [Escherichia sp. 1_1_43]
 gi|226840183|gb|EEH72185.1| formate-dependent nitrite reductase [Escherichia sp. 1_1_43]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|150402633|ref|YP_001329927.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033663|gb|ABR65776.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 161

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CILC    C+E+CPV+        +    D+C+ C  C   CPVDAIK
Sbjct: 36 EICILCDR--CLEICPVNAISSTFPEVPYIDDKCVYCNTCVETCPVDAIK 83


>gi|74313007|ref|YP_311426.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|301329002|ref|ZP_07222029.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|73856484|gb|AAZ89191.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|300844636|gb|EFK72396.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
          Length = 218

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|15668691|ref|NP_247490.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474788|sp|Q57934|Y514_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514
 gi|1591217|gb|AAB98503.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 250

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+E CP++   +  + + I+ D+CI CG C   CP +AIK
Sbjct: 206 CIEECPINAIDQDGDKVKINKDKCILCGRCVDVCPTNAIK 245


>gi|238788647|ref|ZP_04632439.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC
           33641]
 gi|238723242|gb|EEQ14890.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC
           33641]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|329964944|ref|ZP_08301952.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328524585|gb|EGF51653.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 486

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP    +  E+  A I  D CI CG+C   CP  AI
Sbjct: 114 INYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAI 169


>gi|315615550|gb|EFU96182.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 3431]
          Length = 175

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 53  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 110

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 111 LTPDFEMG 118


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + YV+  E C+ C  T C + CPV C   E +    I+ D CI CG C  +C  DAI
Sbjct: 519 IKYVIDPEKCVGC--TVCAKACPVSCISGERKEPHLINQDACIKCGQCYQKCKFDAI 573


>gi|307825404|ref|ZP_07655623.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
 gi|307733579|gb|EFO04437.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
          Length = 192

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + +++ E+CI C    C+  CPVD        +  +   EC  C +C   CPVD I    
Sbjct: 81  VAFIIEEDCIGC--VKCIADCPVDAIVGAAKLMHTVIASECTGCELCIAPCPVDCIIMQA 138

Query: 60  EP 61
            P
Sbjct: 139 AP 140


>gi|298480728|ref|ZP_06998924.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
 gi|298273162|gb|EFI14727.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
          Length = 489

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|288559375|ref|YP_003422861.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
 gi|288542085|gb|ADC45969.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
          Length = 660

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENFL---------------AIHPDECIDCG 44
           YV  ++C  C    C EVCP++    + EG   +                I  + CIDCG
Sbjct: 246 YVKEDDCTGCGQ--CQEVCPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKNYCIDCG 303

Query: 45  VCEPECPVDAIKPDTEP 61
           +CE  C  DAI  D EP
Sbjct: 304 LCETVCGPDAIDRDMEP 320


>gi|281181155|dbj|BAI57485.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE15]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|239906941|ref|YP_002953682.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
 gi|239796807|dbj|BAH75796.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
          Length = 304

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C+ C   +CV VCP      G+  + +    CI CG C   CP  A+   T PG + W +
Sbjct: 16 CVGCG--ECVTVCPSGVLSLGDGLVVVAGAGCIGCGQCRAVCPQCAL---TIPGDDPWAQ 70


>gi|229529443|ref|ZP_04418833.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
 gi|229333217|gb|EEN98703.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
          Length = 553

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|167759678|ref|ZP_02431805.1| hypothetical protein CLOSCI_02037 [Clostridium scindens ATCC 35704]
 gi|167662709|gb|EDS06839.1| hypothetical protein CLOSCI_02037 [Clostridium scindens ATCC 35704]
          Length = 139

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           M   V + C  C    C+E CP    Y+ E +  I    D+C  C  C+  CP DAI+ D
Sbjct: 47  MQKNVCDGCTHC--GKCLEACPFGAIYKDEQYGLILTDKDKCRKCRKCQAVCPNDAIRFD 104

Query: 59  TEPGLE 64
            +  +E
Sbjct: 105 ADGKME 110


>gi|145590102|ref|YP_001156699.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|145048508|gb|ABP35135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
          Length = 88

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%), Gaps = 4/29 (13%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELW 66
          DECI+C VCEPECP DAI      GLE++
Sbjct: 7  DECINCDVCEPECPNDAIY----MGLEIY 31


>gi|15602251|ref|NP_245323.1| electron transport complex protein RnfB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|17368782|sp|Q9CNP1|RNFB_PASMU RecName: Full=Electron transport complex protein rnfB
 gi|12720633|gb|AAK02470.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD        +  I PD C  C +C P CP D I 
Sbjct: 107 VAFIDEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCIS 161


>gi|89073353|ref|ZP_01159877.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
 gi|89050840|gb|EAR56314.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
          Length = 194

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|238794600|ref|ZP_04638207.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC
           29909]
 gi|238726086|gb|EEQ17633.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC
           29909]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|283833812|ref|ZP_06353553.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291070479|gb|EFE08588.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|261885847|ref|ZP_06009886.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 216

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C  C    C  VCP         ++ +H   CI C +C   CP  AI  D+
Sbjct: 49  VMPNQCRQCDDAPCALVCPSSALRNENGYVEMHEQLCIGCALCVNACPYGAIHLDS 104


>gi|227826744|ref|YP_002828523.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|229583908|ref|YP_002842409.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238618839|ref|YP_002913664.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
 gi|227458539|gb|ACP37225.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|228018957|gb|ACP54364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238379908|gb|ACR40996.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
          Length = 363

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  + +  I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKE 85
           D     E+W +  ++Y     N+   ++
Sbjct: 326 DYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|237732312|ref|ZP_04562793.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2]
 gi|283832289|ref|ZP_06352030.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC
           29220]
 gi|226907851|gb|EEH93769.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2]
 gi|291071934|gb|EFE10043.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC
           29220]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|218691011|ref|YP_002399223.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli ED1a]
 gi|218428575|emb|CAR09502.2| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli ED1a]
          Length = 162

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSTCPFGMITIQSLPG 108


>gi|187733852|ref|YP_001882767.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii CDC
           3083-94]
 gi|187430844|gb|ACD10118.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii CDC
           3083-94]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|333001614|gb|EGK21182.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|323184464|gb|EFZ69839.1| hydrogenase-4 component A [Escherichia coli 1357]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|331681003|ref|ZP_08381640.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H299]
 gi|331081224|gb|EGI52385.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H299]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|283786349|ref|YP_003366214.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium
           ICC168]
 gi|282949803|emb|CBG89426.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium
           ICC168]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|256017375|ref|ZP_05431240.1| hydrogenase 4, 4Fe-4S subunit [Shigella sp. D9]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|238759969|ref|ZP_04621122.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236]
 gi|238701796|gb|EEP94360.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|153835285|ref|ZP_01987952.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio harveyi HY01]
 gi|148868221|gb|EDL67367.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio harveyi HY01]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 141


>gi|123441683|ref|YP_001005667.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|156633543|sp|A1JLI2|NUOI_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122088644|emb|CAL11439.1| NADH Dehydrogenase I chain I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|134046811|ref|YP_001098296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664436|gb|ABO36082.1| membrane-bound hydrogenase subunit ehbK [Methanococcus maripaludis
           C5]
          Length = 481

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C+LC+   C++ CP D     E   F +I  +ECI CG C   CP DAI
Sbjct: 317 VNGGCVLCEV--CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAI 367



 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          TY   ENC   + + C+EVCP +     +G+ F       CI CG C  ECP  AIK + 
Sbjct: 11 TYEECENCKNKEISKCMEVCPTNAIKMIDGKAF------SCITCGTCAKECPTGAIKKNE 64

Query: 60 EPGLELWLKI 69
            G  +  K+
Sbjct: 65 YGGYYVNRKL 74



 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 12/61 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           VTENCILC +  C+  CP D   E   F  +   E         CI+CG+C   CP +A+
Sbjct: 225 VTENCILCGN--CISKCPKD-VLEISEFKVVKTKEDVKAKPEKHCINCGLCVDLCPSNAL 281

Query: 56  K 56
           +
Sbjct: 282 R 282


>gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C  T C +VCPV+C   + +    I    CI CG C  +C  DAI
Sbjct: 433 VVDQKCVGC--TLCAKVCPVNCISGKPKEVHVIDQAACIKCGACLDKCKFDAI 483


>gi|83590738|ref|YP_430747.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573652|gb|ABC20204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I+PD C+ CG C   CP  AI  +  PG
Sbjct: 158 INPDRCLACGRCRRVCPAGAIATNEAPG 185


>gi|45359026|ref|NP_988583.1| polyferredoxin [Methanococcus maripaludis S2]
 gi|45047901|emb|CAF31019.1| polyferredoxin [Methanococcus maripaludis S2]
          Length = 393

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLELWLKINSEYAT 75
           N   I+P+ C+ CG+C+  CPVDAI   K +T   L    KI  E+ +
Sbjct: 306 NLPYINPEYCVRCGLCQNACPVDAIDYLKTETSEDLYSKRKIRDEFES 353


>gi|333002267|gb|EGK21831.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333016088|gb|EGK35420.1| hydrogenase-4 component A [Shigella flexneri K-227]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|331664457|ref|ZP_08365363.1| putative electron transport protein YgfS [Escherichia coli TA143]
 gi|331058388|gb|EGI30369.1| putative electron transport protein YgfS [Escherichia coli TA143]
          Length = 151

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 109


>gi|325290604|ref|YP_004266785.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966005|gb|ADY56784.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 295

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLE 64
             CI C    C+E C  +   +  +   +   EC  CGVCE  CPV AI  +PD    L 
Sbjct: 67  RKCISCGL--CLEYCRFNAIKKNNSQYEVSCYECEGCGVCEAFCPVQAISLQPDKAGELR 124

Query: 65  LWL 67
           L++
Sbjct: 125 LYM 127


>gi|323473828|gb|ADX84434.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus REY15A]
          Length = 363

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  + +  I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKE 85
           D     E+W +  ++Y     N+   ++
Sbjct: 326 DYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|300817759|ref|ZP_07097974.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820857|ref|ZP_07101007.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300903489|ref|ZP_07121414.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|301302831|ref|ZP_07208959.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|309794478|ref|ZP_07688901.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|331678465|ref|ZP_08379140.1| hydrogenase-4 component A [Escherichia coli H591]
 gi|300404521|gb|EFJ88059.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300526610|gb|EFK47679.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300529747|gb|EFK50809.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300841766|gb|EFK69526.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|308121934|gb|EFO59196.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315256495|gb|EFU36463.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|324020155|gb|EGB89374.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|331074925|gb|EGI46245.1| hydrogenase-4 component A [Escherichia coli H591]
          Length = 218

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|294789158|ref|ZP_06754397.1| ferredoxin [Simonsiella muelleri ATCC 29453]
 gi|294482899|gb|EFG30587.1| ferredoxin [Simonsiella muelleri ATCC 29453]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|290967889|ref|ZP_06559439.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782028|gb|EFD94606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 1173

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 10/49 (20%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI----KPDTEPG-LELWLKINSEYATQ 76
           + +  D+C++CG C   CPVDA+      DTE   +ELW      YAT+
Sbjct: 736 IVVDQDDCLECGSCVDVCPVDALTMVPNVDTERAKMELWY-----YATE 779


>gi|315505893|ref|YP_004084780.1| formate dehydrogenase beta subunit [Micromonospora sp. L5]
 gi|315412512|gb|ADU10629.1| formate dehydrogenase beta subunit [Micromonospora sp. L5]
          Length = 347

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 165 MMSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCISACPYGVI 217


>gi|269102198|ref|ZP_06154895.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162096|gb|EEZ40592.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 192

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G    AIH    DEC  C +C   CP D I+
Sbjct: 105 VAFIHEDMCIGC--TKCIQACPVDAIVGGTK--AIHTVIKDECTGCKLCVAPCPTDCIE 159


>gi|291326372|ref|ZP_06573930.1| tetrathionate reductase complex, subunit B [Providencia rettgeri
           DSM 1131]
 gi|291314566|gb|EFE55019.1| tetrathionate reductase complex, subunit B [Providencia rettgeri
           DSM 1131]
          Length = 252

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+ + +  +E C+ C  C   CP DA
Sbjct: 106 LCNHCDNPPCVPVCPVQATFQREDGIVVVDNERCVGCAYCVQACPYDA 153


>gi|226328967|ref|ZP_03804485.1| hypothetical protein PROPEN_02869 [Proteus penneri ATCC 35198]
 gi|225202153|gb|EEG84507.1| hypothetical protein PROPEN_02869 [Proteus penneri ATCC 35198]
          Length = 189

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDA 54
           +T +C  C    C++VCP D + + E+ + +   D+CI C +C   CP +A
Sbjct: 56  ITMSCNHCDDPQCLKVCPADTYTKREDGIVVQDHDKCIGCQMCIMACPYNA 106


>gi|167758024|ref|ZP_02430151.1| hypothetical protein CLOSCI_00361 [Clostridium scindens ATCC
          35704]
 gi|167664456|gb|EDS08586.1| hypothetical protein CLOSCI_00361 [Clostridium scindens ATCC
          35704]
          Length = 141

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
          M+Y +TE CI C  T C ++CPV    EG  +    I+   C++CGVC   C   AI
Sbjct: 1  MSYFITEKCIGC--TLCKKLCPVG-AVEGTLKERHRINEKRCVECGVCGRACGQGAI 54


>gi|220918377|ref|YP_002493681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956231|gb|ACL66615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 273

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           ++ V + C  C+ T C++VCPV   Y   +  + +  + CI C  C   CP  +  + P+
Sbjct: 139 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGAVLVDGERCIGCAYCVQACPFGSRFLSPE 198

Query: 59  TE 60
           T 
Sbjct: 199 TH 200


>gi|220926639|ref|YP_002501941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219951246|gb|ACL61638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 960

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + CI    CE  CP
Sbjct: 782 CMHCEHAPCEPVCPVAASVHDGEGLNVQVYNRCIGTRFCEANCP 825


>gi|229583141|ref|YP_002841540.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
 gi|228013857|gb|ACP49618.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
          Length = 363

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  + +  I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKE 85
           D     E+W +  ++Y     N+   ++
Sbjct: 326 DYRRPYEMWKENKAKYKEWLKNVRQARK 353


>gi|28210729|ref|NP_781673.1| ferredoxin [Clostridium tetani E88]
 gi|28203167|gb|AAO35610.1| rnfB/polyferredoxin [Clostridium tetani E88]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C   CPV+     +N   I+ D+C+ CG+C  +CP  AI
Sbjct: 217 GCISCGL--CARNCPVEAIEMVDNLPVINYDKCVQCGICVKKCPTKAI 262


>gi|76802482|ref|YP_327490.1| ferredoxin II [Natronomonas pharaonis DSM 2160]
 gi|76558347|emb|CAI49937.1| ferredoxin II [Natronomonas pharaonis DSM 2160]
          Length = 109

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHP---DECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F         E+   + P   D+CIDC +C   CPV
Sbjct: 37  THVAVDLDICVGDGACLEDCPVDVFEWIDTPDHPESEQKVTPADEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPGLE 64
           DAI  D +PG E
Sbjct: 97  DAI--DVDPGRE 106


>gi|22125532|ref|NP_668955.1| NADH dehydrogenase subunit I [Yersinia pestis KIM 10]
 gi|45442148|ref|NP_993687.1| NADH dehydrogenase subunit I [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596899|ref|YP_071090.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 32953]
 gi|108808035|ref|YP_651951.1| NADH dehydrogenase subunit I [Yersinia pestis Antiqua]
 gi|108812305|ref|YP_648072.1| NADH dehydrogenase subunit I [Yersinia pestis Nepal516]
 gi|145599238|ref|YP_001163314.1| NADH dehydrogenase subunit I [Yersinia pestis Pestoides F]
 gi|149365546|ref|ZP_01887581.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125]
 gi|153950602|ref|YP_001400439.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 31758]
 gi|162421132|ref|YP_001606298.1| NADH dehydrogenase subunit I [Yersinia pestis Angola]
 gi|165925636|ref|ZP_02221468.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937677|ref|ZP_02226239.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008508|ref|ZP_02229406.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213832|ref|ZP_02239867.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399268|ref|ZP_02304792.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422344|ref|ZP_02314097.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424548|ref|ZP_02316301.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470944|ref|ZP_02335648.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis FV-1]
 gi|170023808|ref|YP_001720313.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis YPIII]
 gi|186895980|ref|YP_001873092.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis PB1/+]
 gi|218929634|ref|YP_002347509.1| NADH dehydrogenase subunit I [Yersinia pestis CO92]
 gi|229838090|ref|ZP_04458249.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895289|ref|ZP_04510463.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides
           A]
 gi|229898650|ref|ZP_04513795.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902649|ref|ZP_04517766.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516]
 gi|270490170|ref|ZP_06207244.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27]
 gi|294504362|ref|YP_003568424.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003]
 gi|81639048|sp|Q669A7|NUOI_YERPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123072748|sp|Q1C6B6|NUOI_YERPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123073347|sp|Q1CHQ8|NUOI_YERPN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123777027|sp|Q7CJ89|NUOI_YERPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633544|sp|A4TM29|NUOI_YERPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772597|sp|A7FGR1|NUOI_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772598|sp|B2K814|NUOI_YERPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772599|sp|A9R6L4|NUOI_YERPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772600|sp|B1JGM0|NUOI_YERPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21958432|gb|AAM85206.1|AE013767_3 NADH dehydrogenase I chain I [Yersinia pestis KIM 10]
 gi|45437012|gb|AAS62564.1| NADH Dehydrogenase I chain I [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590181|emb|CAH21818.1| NADH dehydrogenase I chain I [Yersinia pseudotuberculosis IP 32953]
 gi|108775953|gb|ABG18472.1| NADH Dehydrogenase I chain I [Yersinia pestis Nepal516]
 gi|108779948|gb|ABG14006.1| NADH Dehydrogenase I chain I [Yersinia pestis Antiqua]
 gi|115348245|emb|CAL21173.1| NADH Dehydrogenase I chain I [Yersinia pestis CO92]
 gi|145210934|gb|ABP40341.1| NADH Dehydrogenase I chain I [Yersinia pestis Pestoides F]
 gi|149291959|gb|EDM42033.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125]
 gi|152962097|gb|ABS49558.1| NADH-quinone oxidoreductase, I subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|162353947|gb|ABX87895.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis Angola]
 gi|165914427|gb|EDR33042.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922745|gb|EDR39896.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992890|gb|EDR45191.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205006|gb|EDR49486.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958850|gb|EDR55871.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051772|gb|EDR63180.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056430|gb|EDR66199.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750342|gb|ACA67860.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis
           YPIII]
 gi|186699006|gb|ACC89635.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680096|gb|EEO76195.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516]
 gi|229688198|gb|EEO80269.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694456|gb|EEO84503.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701775|gb|EEO89800.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides
           A]
 gi|262362649|gb|ACY59370.1| NADH dehydrogenase subunit I [Yersinia pestis D106004]
 gi|262366278|gb|ACY62835.1| NADH dehydrogenase subunit I [Yersinia pestis D182038]
 gi|270338674|gb|EFA49451.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27]
 gi|294354821|gb|ADE65162.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003]
 gi|320014614|gb|ADV98185.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|330860328|emb|CBX70641.1| NADH-quinone oxidoreductase subunit I [Yersinia enterocolitica
           W22703]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|320180465|gb|EFW55396.1| Hydrogenase-4 component A [Shigella boydii ATCC 9905]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|315180297|gb|ADT87211.1| hydrogenase 4 Fe-S subunit [Vibrio furnissii NCTC 11218]
          Length = 201

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           I+C+H +   C  VCPV    + E+ + +    CI C +C   CP  AI  D
Sbjct: 49  IMCRHCEDAPCATVCPVHAIKKEEDRILLQETLCIGCTLCAVACPFGAIALD 100


>gi|300924342|ref|ZP_07140319.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           182-1]
 gi|301330549|ref|ZP_07223159.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           78-1]
 gi|300419432|gb|EFK02743.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           182-1]
 gi|300843501|gb|EFK71261.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           78-1]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|284924166|emb|CBG37266.1| cytochrome c-type biogenesis protein [Escherichia coli 042]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|283836636|ref|ZP_06356377.1| cytochrome c nitrite reductase, Fe-S protein [Citrobacter youngae
           ATCC 29220]
 gi|291067370|gb|EFE05479.1| cytochrome c nitrite reductase, Fe-S protein [Citrobacter youngae
           ATCC 29220]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACP 136


>gi|302867706|ref|YP_003836343.1| formate dehydrogenase subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|302570565|gb|ADL46767.1| formate dehydrogenase beta subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 347

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 165 MMSDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCISACPYGVI 217


>gi|237713804|ref|ZP_04544285.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409289|ref|ZP_06085832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644700|ref|ZP_06722449.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805939|ref|ZP_06764806.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446251|gb|EEO52042.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352741|gb|EEZ01838.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639963|gb|EFF58232.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446821|gb|EFG15421.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295085089|emb|CBK66612.1| Iron only hydrogenase large subunit, C-terminal domain [Bacteroides
           xylanisolvens XB1A]
          Length = 489

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  D C+ CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAI 167


>gi|256372222|ref|YP_003110046.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008806|gb|ACU54373.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
          Length = 762

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAI----KP 57
          V+T+ C  C+  +C+  CPV+      +   +  D   C+ C  CE  CP DAI     P
Sbjct: 8  VLTDRCAGCQ--ECLIRCPVEAIDLDLDRYVVTVDSARCVGCRQCERVCPFDAIVVAGDP 65

Query: 58 DTEPG 62
             PG
Sbjct: 66 QVAPG 70


>gi|256823445|ref|YP_003147408.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Kangiella koreensis DSM 16069]
 gi|256796984|gb|ACV27640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kangiella
          koreensis DSM 16069]
          Length = 86

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +T+ CI C    C   CP +  Y+GE    I PD+C +C        C+  CPVD 
Sbjct: 1  MALKITDECINCDV--CEPECPNEAIYQGEEIYEIDPDKCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I  D E       + N E   ++  +T  K
Sbjct: 59 IPLDEE-----HPETNEELIVKYEKLTGNK 83


>gi|254286422|ref|ZP_04961380.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
 gi|150423589|gb|EDN15532.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
          Length = 553

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|148974078|ref|ZP_01811611.1| tetrathionate reductase, subunit B [Vibrionales bacterium SWAT-3]
 gi|145965775|gb|EDK31023.1| tetrathionate reductase, subunit B [Vibrionales bacterium SWAT-3]
          Length = 263

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   C++VCPV   ++ E+ + +  +E C+ C  C   CP DA
Sbjct: 111 LCNHCDNAPCIKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDA 158


>gi|118594546|ref|ZP_01551893.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylophilales
          bacterium HTCC2181]
 gi|118440324|gb|EAV46951.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylophilales
          bacterium HTCC2181]
          Length = 82

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G+E++ +IN +  T+
Sbjct: 7  DECINCDVCEPECPNDAIY----QGIEIY-EINPKLCTE 40


>gi|262393887|ref|YP_003285741.1| NrfC protein [Vibrio sp. Ex25]
 gi|262337481|gb|ACY51276.1| NrfC protein [Vibrio sp. Ex25]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 141


>gi|396407|gb|AAC43166.1| ORF_o223 [Escherichia coli str. K-12 substr. MG1655]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|193067862|ref|ZP_03048828.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E110019]
 gi|192958837|gb|EDV89274.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E110019]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|157161943|ref|YP_001459261.1| hydrogenase-4 component A [Escherichia coli HS]
 gi|191167653|ref|ZP_03029463.1| hydrogenase-4 component A [Escherichia coli B7A]
 gi|193068427|ref|ZP_03049390.1| hydrogenase-4 component A [Escherichia coli E110019]
 gi|209919956|ref|YP_002294040.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218696110|ref|YP_002403777.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli 55989]
 gi|293446836|ref|ZP_06663258.1| hyfA [Escherichia coli B088]
 gi|312973284|ref|ZP_07787456.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331669220|ref|ZP_08370068.1| hydrogenase-4 component A [Escherichia coli TA271]
 gi|157067623|gb|ABV06878.1| hydrogenase-4 component A [Escherichia coli HS]
 gi|190902333|gb|EDV62072.1| hydrogenase-4 component A [Escherichia coli B7A]
 gi|192958379|gb|EDV88819.1| hydrogenase-4 component A [Escherichia coli E110019]
 gi|209913215|dbj|BAG78289.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218352842|emb|CAU98637.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli 55989]
 gi|291323666|gb|EFE63094.1| hyfA [Escherichia coli B088]
 gi|310331879|gb|EFP99114.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|323944700|gb|EGB40767.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|331064414|gb|EGI36325.1| hydrogenase-4 component A [Escherichia coli TA271]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 98


>gi|15804664|ref|NP_290705.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 EDL933]
 gi|15834308|ref|NP_313081.1| NrfC [Escherichia coli O157:H7 str. Sakai]
 gi|16131898|ref|NP_418496.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|24115338|ref|NP_709848.1| formate-dependent nitrite reductase [Shigella flexneri 2a str. 301]
 gi|30064661|ref|NP_838832.1| formate-dependent nitrite reductase [Shigella flexneri 2a str.
           2457T]
 gi|74314565|ref|YP_312984.1| formate-dependent nitrite reductase [Shigella sonnei Ss046]
 gi|82546416|ref|YP_410363.1| formate-dependent nitrite reductase complex Fe-S centers [Shigella
           boydii Sb227]
 gi|89110793|ref|AP_004573.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|110807909|ref|YP_691429.1| formate-dependent nitrite reductase [Shigella flexneri 5 str. 8401]
 gi|157157837|ref|YP_001465576.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E24377A]
 gi|157163542|ref|YP_001460860.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli HS]
 gi|168748075|ref|ZP_02773097.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755247|ref|ZP_02780254.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760926|ref|ZP_02785933.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766336|ref|ZP_02791343.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774435|ref|ZP_02799442.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780489|ref|ZP_02805496.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784693|ref|ZP_02809700.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC869]
 gi|168798260|ref|ZP_02823267.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC508]
 gi|170021929|ref|YP_001726883.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli ATCC
           8739]
 gi|170083526|ref|YP_001732846.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188495798|ref|ZP_03003068.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           53638]
 gi|191168764|ref|ZP_03030541.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli B7A]
 gi|194432233|ref|ZP_03064521.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           1012]
 gi|195935857|ref|ZP_03081239.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808344|ref|ZP_03250681.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811978|ref|ZP_03253307.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819115|ref|ZP_03259435.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396255|ref|YP_002273613.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209921558|ref|YP_002295642.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE11]
 gi|217325897|ref|ZP_03441981.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556630|ref|YP_002389544.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI1]
 gi|218697781|ref|YP_002405448.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli 55989]
 gi|218707694|ref|YP_002415213.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UMN026]
 gi|238903181|ref|YP_002928977.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BW2952]
 gi|253775300|ref|YP_003038131.1| cytochrome C nitrite reductase, Fe-S protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164007|ref|YP_003047115.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli B str. REL606]
 gi|254796092|ref|YP_003080929.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|256019721|ref|ZP_05433586.1| formate-dependent nitrite reductase, 4Fe4S subunit [Shigella sp.
           D9]
 gi|256024946|ref|ZP_05438811.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia sp.
           4_1_40B]
 gi|260858182|ref|YP_003232073.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260870831|ref|YP_003237233.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O111:H- str. 11128]
 gi|261225191|ref|ZP_05939472.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255557|ref|ZP_05948090.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285489|ref|YP_003502307.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402711|ref|ZP_06646808.1| cytochrome c nitrite reductase [Escherichia coli FVEC1412]
 gi|293407806|ref|ZP_06651646.1| cytochrome c nitrite reductase [Escherichia coli B354]
 gi|293417577|ref|ZP_06660199.1| cytochrome c nitrite reductase [Escherichia coli B185]
 gi|293476377|ref|ZP_06664785.1| cytochrome c nitrite reductase [Escherichia coli B088]
 gi|298378240|ref|ZP_06988124.1| formate-dependent nitrite reductase [Escherichia coli FVEC1302]
 gi|300817994|ref|ZP_07098207.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           107-1]
 gi|300824670|ref|ZP_07104777.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           119-7]
 gi|300897486|ref|ZP_07115904.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           198-1]
 gi|300906393|ref|ZP_07124091.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           84-1]
 gi|300916948|ref|ZP_07133648.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           115-1]
 gi|300930495|ref|ZP_07145894.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           187-1]
 gi|300946659|ref|ZP_07160916.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           116-1]
 gi|300957506|ref|ZP_07169716.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           175-1]
 gi|301019230|ref|ZP_07183426.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           196-1]
 gi|301021611|ref|ZP_07185607.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           69-1]
 gi|301302762|ref|ZP_07208891.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           124-1]
 gi|301645068|ref|ZP_07245030.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           146-1]
 gi|307140763|ref|ZP_07500119.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           H736]
 gi|307312086|ref|ZP_07591723.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli W]
 gi|309795881|ref|ZP_07690295.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           145-7]
 gi|312974130|ref|ZP_07788301.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1827-70]
 gi|331644815|ref|ZP_08345932.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H736]
 gi|331655895|ref|ZP_08356883.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M718]
 gi|331665744|ref|ZP_08366638.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA143]
 gi|331670938|ref|ZP_08371772.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA271]
 gi|331680203|ref|ZP_08380862.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H591]
 gi|332280856|ref|ZP_08393269.1| nrfC [Shigella sp. D9]
 gi|77416666|sp|P0AAK8|NRFC_ECO57 RecName: Full=Protein nrfC; Flags: Precursor
 gi|77416667|sp|P0AAK7|NRFC_ECOLI RecName: Full=Protein nrfC; Flags: Precursor
 gi|77416668|sp|P0AAK9|NRFC_SHIFL RecName: Full=Protein nrfC; Flags: Precursor
 gi|12519029|gb|AAG59270.1|AE005640_4 formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. EDL933]
 gi|404304|emb|CAA51043.1| nrfC [Escherichia coli]
 gi|2367345|gb|AAC77042.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13364531|dbj|BAB38477.1| formate-dependent nitrite reductase NrfC [Escherichia coli O157:H7
           str. Sakai]
 gi|24054641|gb|AAN45555.1| formate-dependent nitrite reductase [Shigella flexneri 2a str. 301]
 gi|30042920|gb|AAP18643.1| formate-dependent nitrite reductase [Shigella flexneri 2a str.
           2457T]
 gi|73858042|gb|AAZ90749.1| formate-dependent nitrite reductase [Shigella sonnei Ss046]
 gi|81247827|gb|ABB68535.1| formate-dependent nitrite reductase complex Fe-S centers [Shigella
           boydii Sb227]
 gi|85676824|dbj|BAE78074.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|110617457|gb|ABF06124.1| NrfC protein [Shigella flexneri 5 str. 8401]
 gi|157069222|gb|ABV08477.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli HS]
 gi|157079867|gb|ABV19575.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E24377A]
 gi|169756857|gb|ACA79556.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli ATCC
           8739]
 gi|169891361|gb|ACB05068.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187769817|gb|EDU33661.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017384|gb|EDU55506.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|188490997|gb|EDU66100.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           53638]
 gi|189001818|gb|EDU70804.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357547|gb|EDU75966.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364249|gb|EDU82668.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368569|gb|EDU86985.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374793|gb|EDU93209.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189379215|gb|EDU97631.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC508]
 gi|190901191|gb|EDV60963.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli B7A]
 gi|194419436|gb|EDX35517.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           1012]
 gi|208728145|gb|EDZ77746.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733255|gb|EDZ81942.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739238|gb|EDZ86920.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157655|gb|ACI35088.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209751068|gb|ACI73841.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751070|gb|ACI73842.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751072|gb|ACI73843.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751074|gb|ACI73844.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751076|gb|ACI73845.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209914817|dbj|BAG79891.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE11]
 gi|217322118|gb|EEC30542.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354513|emb|CAV01381.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli 55989]
 gi|218363399|emb|CAR01052.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI1]
 gi|218434791|emb|CAR15723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UMN026]
 gi|238861138|gb|ACR63136.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BW2952]
 gi|242379599|emb|CAQ34421.1| formate-dependent nitrite reductase, 4Fe-4S subunit, subunit of
           nitrite reductase complex [Escherichia coli BL21(DE3)]
 gi|253326344|gb|ACT30946.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975908|gb|ACT41579.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli B str. REL606]
 gi|253980064|gb|ACT45734.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BL21(DE3)]
 gi|254595492|gb|ACT74853.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257756831|dbj|BAI28333.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257767187|dbj|BAI38682.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O111:H- str. 11128]
 gi|260451098|gb|ACX41520.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli DH1]
 gi|281603444|gb|ADA76428.1| putative Fe-S-cluster-containing hydrogenase components 1 [Shigella
           flexneri 2002017]
 gi|290765362|gb|ADD59323.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320830|gb|EFE60272.1| cytochrome c nitrite reductase [Escherichia coli B088]
 gi|291429626|gb|EFF02640.1| cytochrome c nitrite reductase [Escherichia coli FVEC1412]
 gi|291430295|gb|EFF03293.1| cytochrome c nitrite reductase [Escherichia coli B185]
 gi|291472057|gb|EFF14539.1| cytochrome c nitrite reductase [Escherichia coli B354]
 gi|298280574|gb|EFI22075.1| formate-dependent nitrite reductase [Escherichia coli FVEC1302]
 gi|299882331|gb|EFI90542.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           196-1]
 gi|300315756|gb|EFJ65540.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           175-1]
 gi|300358761|gb|EFJ74631.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           198-1]
 gi|300397952|gb|EFJ81490.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           69-1]
 gi|300401841|gb|EFJ85379.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           84-1]
 gi|300415776|gb|EFJ99086.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           115-1]
 gi|300453638|gb|EFK17258.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           116-1]
 gi|300461629|gb|EFK25122.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           187-1]
 gi|300522853|gb|EFK43922.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           119-7]
 gi|300529404|gb|EFK50466.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           107-1]
 gi|300841982|gb|EFK69742.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           124-1]
 gi|301076634|gb|EFK91440.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           146-1]
 gi|306907893|gb|EFN38394.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli W]
 gi|308120542|gb|EFO57804.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           145-7]
 gi|309704540|emb|CBJ03889.1| cytochrome c-type biogenesis protein [Escherichia coli ETEC H10407]
 gi|310331664|gb|EFP98920.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1827-70]
 gi|313648724|gb|EFS13164.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri 2a
           str. 2457T]
 gi|315063396|gb|ADT77723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli W]
 gi|315138627|dbj|BAJ45786.1| formate-dependent nitrite reductase 4Fe-4S subunit [Escherichia
           coli DH1]
 gi|315254754|gb|EFU34722.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           85-1]
 gi|315617447|gb|EFU98053.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           3431]
 gi|320174437|gb|EFW49581.1| NrfC protein [Shigella dysenteriae CDC 74-1112]
 gi|320183144|gb|EFW58004.1| NrfC protein [Shigella flexneri CDC 796-83]
 gi|320190799|gb|EFW65449.1| NrfC protein [Escherichia coli O157:H7 str. EC1212]
 gi|320200794|gb|EFW75380.1| NrfC protein [Escherichia coli EC4100B]
 gi|320638829|gb|EFX08475.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. G5101]
 gi|320644197|gb|EFX13262.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H- str. 493-89]
 gi|320649516|gb|EFX18040.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H- str. H 2687]
 gi|320654912|gb|EFX22873.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660418|gb|EFX27879.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665689|gb|EFX32726.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155881|gb|EFZ42049.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           EPECa14]
 gi|323164520|gb|EFZ50321.1| cytochrome c nitrite reductase, Fe-S protein [Shigella sonnei 53G]
 gi|323171496|gb|EFZ57142.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           LT-68]
 gi|323175963|gb|EFZ61555.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1180]
 gi|323182179|gb|EFZ67589.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1357]
 gi|323380540|gb|ADX52808.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           KO11]
 gi|323935563|gb|EGB31894.1| cytochrome c nitrite reductase [Escherichia coli E1520]
 gi|323940256|gb|EGB36449.1| cytochrome c nitrite reductase [Escherichia coli E482]
 gi|323946206|gb|EGB42240.1| cytochrome c nitrite reductase [Escherichia coli H120]
 gi|323960438|gb|EGB56072.1| cytochrome c nitrite reductase [Escherichia coli H489]
 gi|323965736|gb|EGB61188.1| cytochrome c nitrite reductase [Escherichia coli M863]
 gi|323969791|gb|EGB65072.1| cytochrome c nitrite reductase [Escherichia coli TA007]
 gi|323975292|gb|EGB70395.1| cytochrome c nitrite reductase [Escherichia coli TW10509]
 gi|324017129|gb|EGB86348.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           117-3]
 gi|324118645|gb|EGC12537.1| cytochrome c nitrite reductase [Escherichia coli E1167]
 gi|326341879|gb|EGD65662.1| NrfC protein [Escherichia coli O157:H7 str. 1125]
 gi|326346547|gb|EGD70281.1| NrfC protein [Escherichia coli O157:H7 str. 1044]
 gi|327250419|gb|EGE62132.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           STEC_7v]
 gi|331035790|gb|EGI08028.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H736]
 gi|331046249|gb|EGI18339.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M718]
 gi|331056795|gb|EGI28789.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA143]
 gi|331061852|gb|EGI33777.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA271]
 gi|331071666|gb|EGI43002.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H591]
 gi|332083567|gb|EGI88787.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii
           5216-82]
 gi|332084228|gb|EGI89431.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           155-74]
 gi|332087818|gb|EGI92944.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii
           3594-74]
 gi|332103208|gb|EGJ06554.1| nrfC [Shigella sp. D9]
 gi|332752191|gb|EGJ82583.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-671]
 gi|332753277|gb|EGJ83658.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           2747-71]
 gi|332764783|gb|EGJ95012.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           2930-71]
 gi|333011118|gb|EGK30532.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-272]
 gi|333012690|gb|EGK32070.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-227]
 gi|333014265|gb|EGK33621.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-304]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|320179068|gb|EFW54027.1| NrfC protein [Shigella boydii ATCC 9905]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|313157389|gb|EFR56812.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 290

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIK 56
          CI C    CV+VCP   F + +   A+    P+ CI CG C   CP  A++
Sbjct: 13 CIRCGR--CVKVCPSQIFVQEKAGAAVTLHKPENCIVCGHCAAACPTGAVE 61


>gi|168263386|ref|ZP_02685359.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347881|gb|EDZ34512.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    Y       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACP 136


>gi|170682605|ref|YP_001744869.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           SMS-3-5]
 gi|170520323|gb|ACB18501.1| formate hydrogenlyase, subunit F [Escherichia coli SMS-3-5]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C  + CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--SACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|158520198|ref|YP_001528068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509024|gb|ABW65991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           CV+ C  +     ++ LA+ +PD CI CG+C   CP +A+
Sbjct: 285 CVDRCQTNALAMDDDGLAVLNPDRCIGCGLCVITCPSEAL 324


>gi|219667057|ref|YP_002457492.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219537317|gb|ACL19056.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C   CP        N   I    C++CG+C   CP  AI
Sbjct: 87  YSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAI 139


>gi|332346076|gb|AEE59410.1| cytochrome c nitrite reductase, Fe-S protein NrfC [Escherichia coli
           UMNK88]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|331699702|ref|YP_004335941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326954391|gb|AEA28088.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 75

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 15 TDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
          T CV+VCP+D        N   +H DEC  CG C   CPVDA+
Sbjct: 24 TLCVDVCPLDSLAIDPETNKAYMHVDECWYCGPCAARCPVDAV 66


>gi|307133274|ref|YP_003885290.1| Electron transport protein hydN [Dickeya dadantii 3937]
 gi|306530803|gb|ADN00734.1| Electron transport protein hydN [Dickeya dadantii 3937]
          Length = 177

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  C  VCP D   + ++ + +    CI C  C   CP  AI   T P 
Sbjct: 57  CHQCENAPCASVCPHDALVQHQDSIQVISSRCIGCKSCVIACPFGAINVVTRPS 110


>gi|288561338|ref|YP_003424824.1| glutamate synthase alpha subunit GltA [Methanobrevibacter
          ruminantium M1]
 gi|288544048|gb|ADC47932.1| glutamate synthase alpha subunit GltA [Methanobrevibacter
          ruminantium M1]
          Length = 495

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 12 CKHT-DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELW 66
          CK+   C   CP    YE   +  L IH + C+ C +CE  CP  AI  +P  + G  +W
Sbjct: 34 CKNCYSCYSNCP-HGVYEVINDEPLPIHQENCVGCKICEEMCPTHAIYVRPLVDEGRGIW 92


>gi|289578798|ref|YP_003477425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|297545019|ref|YP_003677321.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528511|gb|ADD02863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|296842794|gb|ADH61310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 123

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CILC    C  VCP +C      E      P EC+ CG C   CP  ++K + E
Sbjct: 41 DKCILC--GICQRVCPSNCIQVNRKEGKWVFQPFECVICGACVENCPTKSLKMEAE 94


>gi|161870931|ref|YP_001600111.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442]
 gi|161596484|gb|ABX74144.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442]
 gi|308388341|gb|ADO30661.1| putative ferredoxin [Neisseria meningitidis alpha710]
 gi|325137182|gb|EGC59777.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M0579]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|45358387|ref|NP_987944.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
 gi|44921145|emb|CAF30380.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
          Length = 397

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 22/109 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------- 55
           V ++ CI C   DC + CP D     E  +A+ P  C  CG+C+  CPVDAI        
Sbjct: 198 VDSDLCIGC--GDCTDKCPRDLIVLNE-MVAVPPKGCPACGLCKAACPVDAIELVVEYAS 254

Query: 56  -KPDTEPGLELWLKINSEY----ATQWPN-----ITTKKESLPSAAKMD 94
            KP T+ G+ +W +    Y    A + PN     +  K   +PS  K +
Sbjct: 255 PKPITDEGI-VWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTE 302


>gi|193063017|ref|ZP_03044109.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli E22]
 gi|194426867|ref|ZP_03059420.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           B171]
 gi|260846866|ref|YP_003224644.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|192931276|gb|EDV83878.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli E22]
 gi|194415203|gb|EDX31472.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           B171]
 gi|257762013|dbj|BAI33510.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|323162159|gb|EFZ48024.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E128010]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|116749279|ref|YP_845966.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698343|gb|ABK17531.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
          Length = 572

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSEYA 74
           C+  CPV          A+ P  C+ CG C   CP  A  ++ D E   +L  + +  +A
Sbjct: 21  CIRECPVKAIKVENACAAVIPQLCVLCGHCVEVCPNGAKHVRDDLEQARQLLKEKDQVFA 80

Query: 75  TQWPNITTKKESLPSAAKMDGVKQ 98
           +  P+  ++   +P +A +  +K+
Sbjct: 81  SLAPSFVSEFPDIPPSAIIRALKK 104


>gi|332752022|gb|EGJ82415.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           4343-70]
 gi|332999188|gb|EGK18775.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-218]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHVPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|313683607|ref|YP_004061345.1| ferredoxin-like protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156467|gb|ADR35145.1| ferredoxin-like protein [Sulfuricurvum kujiense DSM 16994]
          Length = 361

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C+++CP   F+   N L +  +EC++C  C   CP +A++ ++
Sbjct: 33 CIDLCPKGAFHIIRNKLTLFENECVECAGCIGSCPTEALEIES 75


>gi|312897705|ref|ZP_07757122.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
 gi|310621338|gb|EFQ04881.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
          Length = 175

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C    C+E CP +    GE+ + +  D C  CG C   CP D I
Sbjct: 58  QCRQCPKPKCMEACPFNAISMGEDSVILDQDICKGCGKCAKACPFDGI 105


>gi|298370606|ref|ZP_06981921.1| ferredoxin [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281216|gb|EFI22706.1| ferredoxin [Neisseria sp. oral taxon 014 str. F0314]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|290475319|ref|YP_003468207.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
 gi|289174640|emb|CBJ81434.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAI 55
           + ++  ENCI C  T C++ CPVD         AIH    D C  C +C   CP D I
Sbjct: 109 VAFIDEENCIGC--TKCIQACPVDAIIGANR--AIHTVVEDLCTGCDLCVAPCPTDCI 162


>gi|258545781|ref|ZP_05706015.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258518971|gb|EEV87830.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 186

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +++ + CI C  T C++ CPVD      +    I  DEC  C +C   CPV+ I
Sbjct: 112 VAFIIEDWCIGC--TKCIKACPVDAILGSNQKMHTIISDECTGCRLCVDPCPVNCI 165


>gi|258514867|ref|YP_003191089.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257778572|gb|ACV62466.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 61

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V +E C+ C    C EVCP +   F   +    I+P+ C++CG CE  CP  +IK
Sbjct: 5  VNSETCVAC--ATCFEVCPAEPKVFEVTDYSKVINPEACLECGACEENCPTGSIK 57


>gi|218263700|ref|ZP_03477727.1| hypothetical protein PRABACTJOHN_03417 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222557|gb|EEC95207.1| hypothetical protein PRABACTJOHN_03417 [Parabacteroides johnsonii
           DSM 18315]
          Length = 268

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++ T  CI C    C+++CP+  F   +  L      CI C +C   CP  +I
Sbjct: 183 VVFLNTSTCINC--GKCIKICPMHIFALKDTVLPTDEKNCIQCRLCADNCPTSSI 235


>gi|222111964|ref|YP_002554228.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|221731408|gb|ACM34228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 687

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 556 DRCTLC--LSCVSACPAGALQDNPQAPQLRFTEQNCVQCGLCERTCPENAI 604


>gi|90579149|ref|ZP_01234959.1| electron transport complex protein RnfB [Vibrio angustum S14]
 gi|90439982|gb|EAS65163.1| electron transport complex protein RnfB [Vibrio angustum S14]
          Length = 194

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|295103163|emb|CBL00707.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Faecalibacterium prausnitzii
          SL3/3]
          Length = 395

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 12 CKHTDCVEVCPVDCFYEGEN---FL--AIHPDECIDCGVCEPECP 51
          C  T C ++CP +C    +N   FL   ++ D+CI CG+CE  CP
Sbjct: 12 CGCTACEQICPRNCIQMRKNEEGFLYPVVNNDKCIKCGLCEKVCP 56


>gi|261378974|ref|ZP_05983547.1| ferredoxin [Neisseria cinerea ATCC 14685]
 gi|296315172|ref|ZP_06865113.1| ferredoxin [Neisseria polysaccharea ATCC 43768]
 gi|269144589|gb|EEZ71007.1| ferredoxin [Neisseria cinerea ATCC 14685]
 gi|296837981|gb|EFH21919.1| ferredoxin [Neisseria polysaccharea ATCC 43768]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPSLCTQ 40


>gi|225568281|ref|ZP_03777306.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
          15053]
 gi|225163000|gb|EEG75619.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
          15053]
          Length = 88

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E CI C    C+  CPV+   + +    I  D C  CG+C  ECP +AI    E G
Sbjct: 34 ETCIACG--TCLLYCPVNSIRKTDGTFTICYDYCKGCGICAHECPKNAITMIPEEG 87


>gi|251798657|ref|YP_003013388.1| dihydropyrimidine dehydrogenase [Paenibacillus sp. JDR-2]
 gi|247546283|gb|ACT03302.1| dihydroorotate dehydrogenase family protein [Paenibacillus sp.
           JDR-2]
          Length = 434

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 7   ENCILCKHT---------DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIK 56
           ENCI+C             C+E    D   +G  +L +  ++C+ C +C   CPV+ AI 
Sbjct: 340 ENCIVCNKCHIACEDTSHQCIERLTTD---DGRAYLKVREEDCVGCNLCSIVCPVEGAIS 396

Query: 57  PDTEPGLELWLKINS 71
               P  EL +  N+
Sbjct: 397 MVEIPSGELPMSWNA 411


>gi|126640817|ref|YP_001083801.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ATCC 17978]
 gi|213156543|ref|YP_002318204.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AB0057]
 gi|215484512|ref|YP_002326747.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii
           AB307-0294]
 gi|213055703|gb|ACJ40605.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AB0057]
 gi|213988464|gb|ACJ58763.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii
           AB307-0294]
 gi|322506935|gb|ADX02389.1| nuoI [Acinetobacter baumannii 1656-2]
 gi|323516802|gb|ADX91183.1| NADH dehydrogenase subunit I [Acinetobacter baumannii TCDC-AB0715]
          Length = 164

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 42  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 99

Query: 57  --PDTEPGLELWLKINSEYATQWPNITTKKESL 87
             PD E G         EY  Q  ++  +KE+L
Sbjct: 100 LTPDFELG---------EYVRQ--DLVYEKENL 121


>gi|126459018|ref|YP_001055296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126248739|gb|ABO07830.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 275

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC+ C    C   CP        E  + I+ D CI CG CE  CP +  K
Sbjct: 91  NCLHCVDAPCARACPAGAIVTTPEGAVVINKDLCIGCGYCENACPFNVPK 140


>gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C  T C +VCPV+C   + +    I    CI CG C  +C  DAI
Sbjct: 433 VVDQKCVGC--TLCAKVCPVNCISGKPKEVHVIDQAACIKCGACLDKCKFDAI 483


>gi|332278371|ref|ZP_08390784.1| hydrogenase 4 Fe-S subunit [Shigella sp. D9]
 gi|332100723|gb|EGJ04069.1| hydrogenase 4 Fe-S subunit [Shigella sp. D9]
          Length = 218

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI 
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAIS 111


>gi|330996166|ref|ZP_08320056.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329573670|gb|EGG55261.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 480

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y VT  C  C    C   CP D   Y+ E    I  ++CI CG C   CP  AI
Sbjct: 113 INYEVTNLCRGCAARPCYNNCPKDAIHYDSEGKAYIDHEKCISCGRCHQVCPYHAI 168


>gi|331650093|ref|ZP_08351166.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M605]
 gi|330908407|gb|EGH36926.1| NrfC protein [Escherichia coli AA86]
 gi|331041038|gb|EGI13195.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M605]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|251789021|ref|YP_003003742.1| NADH dehydrogenase subunit I [Dickeya zeae Ech1591]
 gi|271501261|ref|YP_003334286.1| NADH-quinone oxidoreductase subunit I [Dickeya dadantii Ech586]
 gi|247537642|gb|ACT06263.1| NADH-quinone oxidoreductase, chain I [Dickeya zeae Ech1591]
 gi|270344816|gb|ACZ77581.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech586]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|238020170|ref|ZP_04600596.1| hypothetical protein GCWU000324_00041 [Kingella oralis ATCC
          51147]
 gi|237868564|gb|EEP69568.1| hypothetical protein GCWU000324_00041 [Kingella oralis ATCC
          51147]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|209695456|ref|YP_002263385.1| cytochrome c-type biogenesis protein NrfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009408|emb|CAQ79684.1| cytochrome c-type biogenesis protein NrfC [Aliivibrio salmonicida
           LFI1238]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENAPCVMVCPTGAAYKDEATGIVDVHNEKCVGCGYCLAACP 143


>gi|315230439|ref|YP_004070875.1| RNase L inhibitor [Thermococcus barophilus MP]
 gi|315183467|gb|ADT83652.1| RNase L inhibitor [Thermococcus barophilus MP]
          Length = 590

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP +AI
Sbjct: 16 CGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 66


>gi|149201260|ref|ZP_01878235.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149145593|gb|EDM33619.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 260

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 86  KSCLHCDDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDQAEGV 144


>gi|113461042|ref|YP_719109.1| tetrathionate reductase subunit B [Haemophilus somnus 129PT]
 gi|112823085|gb|ABI25174.1| tetrathionate reductase beta subunit [Haemophilus somnus 129PT]
          Length = 245

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           LC H D   CV VCPV   Y+ ++  + I    CI C  C   CP DA   ++E
Sbjct: 98  LCNHCDNPPCVPVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSE 151


>gi|26250880|ref|NP_756920.1| NrfC protein [Escherichia coli CFT073]
 gi|91213615|ref|YP_543601.1| NrfC protein [Escherichia coli UTI89]
 gi|110644424|ref|YP_672154.1| NrfC protein [Escherichia coli 536]
 gi|117626354|ref|YP_859677.1| formate-dependent nitire reductase subunit NrfC [Escherichia coli
           APEC O1]
 gi|191171961|ref|ZP_03033506.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli F11]
 gi|215489417|ref|YP_002331848.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218561157|ref|YP_002394070.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli S88]
 gi|218692364|ref|YP_002400576.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ED1a]
 gi|227886899|ref|ZP_04004704.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           83972]
 gi|237703652|ref|ZP_04534133.1| formate-dependent nitrite reductase subunit NrfC [Escherichia sp.
           3_2_53FAA]
 gi|300973868|ref|ZP_07172357.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           45-1]
 gi|300980240|ref|ZP_07174898.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           200-1]
 gi|301051420|ref|ZP_07198230.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           185-1]
 gi|306815806|ref|ZP_07449951.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli NC101]
 gi|312965680|ref|ZP_07779909.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           2362-75]
 gi|331660652|ref|ZP_08361584.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA206]
 gi|26111312|gb|AAN83494.1|AE016771_5 NrfC protein [Escherichia coli CFT073]
 gi|91075189|gb|ABE10070.1| NrfC protein [Escherichia coli UTI89]
 gi|110346016|gb|ABG72253.1| NrfC protein [Escherichia coli 536]
 gi|115515478|gb|ABJ03553.1| formate-dependent nitire reductase subunit NrfC [Escherichia coli
           APEC O1]
 gi|190907726|gb|EDV67320.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli F11]
 gi|215267489|emb|CAS11943.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218367926|emb|CAR05723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli S88]
 gi|218429928|emb|CAR10905.2| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ED1a]
 gi|222035795|emb|CAP78540.1| Protein nrfC [Escherichia coli LF82]
 gi|226901564|gb|EEH87823.1| formate-dependent nitrite reductase subunit NrfC [Escherichia sp.
           3_2_53FAA]
 gi|227836040|gb|EEJ46506.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           83972]
 gi|294489652|gb|ADE88408.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|300296950|gb|EFJ53335.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           185-1]
 gi|300307807|gb|EFJ62327.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           200-1]
 gi|300410678|gb|EFJ94216.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           45-1]
 gi|305850781|gb|EFM51237.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli NC101]
 gi|307556236|gb|ADN49011.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ABU 83972]
 gi|307629137|gb|ADN73441.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UM146]
 gi|312289654|gb|EFR17545.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           2362-75]
 gi|312948660|gb|ADR29487.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315287909|gb|EFU47311.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           110-3]
 gi|315294773|gb|EFU54116.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           153-1]
 gi|315297484|gb|EFU56763.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           16-3]
 gi|320193444|gb|EFW68081.1| NrfC protein [Escherichia coli WV_060327]
 gi|323190048|gb|EFZ75326.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           RN587/1]
 gi|323950368|gb|EGB46249.1| cytochrome c nitrite reductase [Escherichia coli H252]
 gi|323954449|gb|EGB50233.1| cytochrome c nitrite reductase [Escherichia coli H263]
 gi|324009516|gb|EGB78735.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           57-2]
 gi|324015614|gb|EGB84833.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           60-1]
 gi|331051694|gb|EGI23733.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA206]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|332968212|gb|EGK07289.1| ferredoxin [Kingella kingae ATCC 23330]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|260655399|ref|ZP_05860887.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
 gi|260629847|gb|EEX48041.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
          Length = 387

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E CI C    C   CPV         G N   I   +CI C  C   CPV AI  D
Sbjct: 211 VAPEECIACGR--CARNCPVRAISMKNPAGANKAFIDQSKCIGCSECMTHCPVSAISID 267



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           L++ P+ECI CG C   CPV AI      G
Sbjct: 209 LSVAPEECIACGRCARNCPVRAISMKNPAG 238


>gi|322421699|ref|YP_004200922.1| Fis family sigma-54 specific transcriptional regulator [Geobacter
          sp. M18]
 gi|320128086|gb|ADW15646.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. M18]
          Length = 760

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +T+ C  C    CV  CPV      +++  I  + CI CG C   CP  A
Sbjct: 7  ITDQCRKC--YSCVRSCPVKAIKVEKSYTEIIFERCIGCGNCLSNCPQHA 54


>gi|242239348|ref|YP_002987529.1| electron transport complex protein RnfB [Dickeya dadantii Ech703]
 gi|242131405|gb|ACS85707.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya
           dadantii Ech703]
          Length = 191

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH---PDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD         AIH    D C  C +C P CP D I+
Sbjct: 108 VAWIDESNCIGC--TKCIQACPVDAIVGSTR--AIHTVISDLCTGCDLCIPPCPTDCIE 162


>gi|238751241|ref|ZP_04612735.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380]
 gi|238710515|gb|EEQ02739.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|226329122|ref|ZP_03804640.1| hypothetical protein PROPEN_03025 [Proteus penneri ATCC 35198]
 gi|225202308|gb|EEG84662.1| hypothetical protein PROPEN_03025 [Proteus penneri ATCC 35198]
          Length = 209

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           T+ C  CK  +C++VCPV      E F  + +    CI C  C   CP  +  + P T+
Sbjct: 121 TDTCRQCKDPECMKVCPVKAIRYQEEFGCIVVDTRRCIGCAACTTACPWMMATVNPQTK 179


>gi|241662549|ref|YP_002980909.1| ferredoxin [Ralstonia pickettii 12D]
 gi|240864576|gb|ACS62237.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12D]
          Length = 276

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  +  E CI C  T C++ CPVD        +  +  D C  C +C P CPVD I
Sbjct: 86  IAVIDPERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCI 139


>gi|150399525|ref|YP_001323292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012228|gb|ABR54680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 394

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLELWLKINSEYA 74
           N   I P  C+ CG+CE  CPVDA+   K D    + L  K+  E+ 
Sbjct: 306 NLPYIDPIYCVRCGICENVCPVDAVDILKTDVSLDISLKQKVRDEFG 352


>gi|90022063|ref|YP_527890.1| putative ferredoxin [Saccharophagus degradans 2-40]
 gi|89951663|gb|ABD81678.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 484

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCPVD    +G  F      ECI+CG+C   C
Sbjct: 279 DCIDCSW--CVQVCPVDIDIRDGLQF------ECINCGLCVDAC 314


>gi|85857990|ref|YP_460192.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
 gi|85721081|gb|ABC76024.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
          Length = 265

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C+ C    CV+VCP    Y  E   + I+  +CI C  C   CP D  + + E
Sbjct: 74  DGCMHCTDAACVKVCPSGALYHTEYGTVGINQAKCIGCKYCISACPFDVPRYNPE 128


>gi|45359187|ref|NP_988744.1| polyferredoxin [Methanococcus maripaludis S2]
 gi|45048062|emb|CAF31180.1| polyferredoxin [Methanococcus maripaludis S2]
          Length = 481

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 12/61 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           VTENCILC   +C+  CP D   E   F  +   E         CI+CG+C  +CP +A+
Sbjct: 225 VTENCILC--GNCISKCPKD-VLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNAL 281

Query: 56  K 56
           +
Sbjct: 282 R 282



 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C+LC+   C++ CP D     E   F +I  +ECI CG C   CP DAI
Sbjct: 317 VDGGCVLCEL--CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAI 367


>gi|37523338|ref|NP_926715.1| hypothetical protein gll3769 [Gloeobacter violaceus PCC 7421]
 gi|35214342|dbj|BAC91710.1| gll3769 [Gloeobacter violaceus PCC 7421]
          Length = 351

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ +CPVD    G     I    C  CG C P CP+  I+
Sbjct: 109 CLRICPVDAIAAG----GIEALRCYGCGRCAPVCPLGLIE 144


>gi|330446484|ref|ZP_08310136.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490675|dbj|GAA04633.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 194

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVSPCPTDCIE 160


>gi|325958129|ref|YP_004289595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329561|gb|ADZ08623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 412

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPD 58
           + + V EN CI C    CVE CP D      + L++  P+ C  CG+CE  CPVDAI  +
Sbjct: 207 LKFEVDENTCIGCNL--CVEECPGDFIEPKPSTLSVTLPEVCTACGLCEKLCPVDAIDLE 264

Query: 59  TEPG 62
            E G
Sbjct: 265 VELG 268


>gi|331675602|ref|ZP_08376349.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA280]
 gi|331067210|gb|EGI38618.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA280]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|303245127|ref|ZP_07331443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484510|gb|EFL47458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 386

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 14/60 (23%)

Query: 8   NCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDE-------CIDCGVCEPECPVDAI 55
           +C+LC+   CV+VCP++        E        PDE       C+ CGVC PECPV+AI
Sbjct: 90  HCVLCQK--CVDVCPIEIISIPGLVEKPKKQITIPDEPIVVMDNCVGCGVCVPECPVEAI 147


>gi|302389274|ref|YP_003825095.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199902|gb|ADL07472.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 345

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 16  DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           DC +VCPV      EN L  I  ++C  CG+C  ECP   I
Sbjct: 149 DCAKVCPVGAITMSENGLPVIDEEKCTGCGLCAKECPKQVI 189


>gi|301633034|ref|XP_002945583.1| PREDICTED: sorbose reductase homolog SOU2-like, partial [Xenopus
          (Silurana) tropicalis]
          Length = 457

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEPG 62
          HP+ECI CG C   CP  A+K    P 
Sbjct: 11 HPEECIACGHCVSVCPTGAVKHSLFPA 37


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +TY +T+ CI C  T C  VCP+D      ++   I  + CI CG C   C   AI
Sbjct: 538 ITYSITDKCIGC--TACARVCPIDAITGTVKHRHEIDNEICIKCGACYETCKFGAI 591


>gi|297582883|ref|YP_003698663.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141340|gb|ADH98097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 286

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C+ C    C  VCPV   Y+ +N + +   D CI C  C   CP  A   D     
Sbjct: 131 IARPCMHCDKPPCASVCPVRATYKADNGIVVQDNDRCIGCRYCMVACPYGARSFDFGEEY 190

Query: 64  ELWLKIN 70
           E  L  N
Sbjct: 191 EEILDAN 197


>gi|158521014|ref|YP_001528884.1| adenylylsulfate reductase, beta subunit [Desulfococcus oleovorans
           Hxd3]
 gi|158509840|gb|ABW66807.1| adenylylsulfate reductase, beta subunit [Desulfococcus oleovorans
           Hxd3]
          Length = 144

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 2   TYVVTENCILCKHTD---CVEVCPVDCFYEGENFLAIH---PDECIDCGVCEPECPVDAI 55
           ++V+ E C  CK  D   C+ +CP D      N +  +   PD+C +C  C   CP  AI
Sbjct: 3   SFVIAEKCDGCKGGDKTACMYICPNDLMVLDANAMKAYNQEPDQCWECFSCVKICPTQAI 62

Query: 56  K----PDTEP-GLELWLKINSE---YATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +     D  P G  +   + +E   +  ++ N T K+   P     +G    Y+
Sbjct: 63  EVRGYADFVPLGSSIMPMMGTEDVMWTCKFRNGTVKRFKFPIRTTDEGTANAYK 116


>gi|146283658|ref|YP_001173811.1| D-lactate dehydrogenase, putative [Pseudomonas stutzeri A1501]
 gi|145571863|gb|ABP80969.1| D-lactate dehydrogenase, putative [Pseudomonas stutzeri A1501]
          Length = 950

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           D+CI+CG CEP CP + +       + +W  I +
Sbjct: 547 DKCIECGFCEPVCPSNGLTLTPRQRIVIWRDIQA 580


>gi|71906801|ref|YP_284388.1| electron transport complex protein RnfB [Dechloromonas aromatica
           RCB]
 gi|71846422|gb|AAZ45918.1| Electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ EN CI C  T C++ CPVD        L  I   +C  C +C P CPV+ I   T P
Sbjct: 104 VIDENTCIGC--TLCIQACPVDAIVGAAKQLHIIIAQQCTGCELCLPPCPVECIAMATIP 161


>gi|15676051|ref|NP_273181.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|59802180|ref|YP_208892.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|121634001|ref|YP_974246.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|194099902|ref|YP_002003039.1| 4Fe-4S ferrodoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997905|ref|ZP_04717829.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae 35/02]
 gi|240015115|ref|ZP_04722028.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae DGI18]
 gi|240017564|ref|ZP_04724104.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae FA6140]
 gi|240081707|ref|ZP_04726250.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae FA19]
 gi|240113983|ref|ZP_04728473.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae MS11]
 gi|240116719|ref|ZP_04730781.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID18]
 gi|240118941|ref|ZP_04733003.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID1]
 gi|240122186|ref|ZP_04735148.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID24-1]
 gi|240124479|ref|ZP_04737435.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID332]
 gi|240124653|ref|ZP_04737539.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          SK-92-679]
 gi|240129154|ref|ZP_04741815.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          SK-93-1035]
 gi|254494740|ref|ZP_05107911.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|254805831|ref|YP_003084052.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|260439522|ref|ZP_05793338.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|261400047|ref|ZP_05986172.1| ferredoxin [Neisseria lactamica ATCC 23970]
 gi|268593756|ref|ZP_06127923.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|268597805|ref|ZP_06131972.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268600048|ref|ZP_06134215.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602390|ref|ZP_06136557.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604652|ref|ZP_06138819.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683110|ref|ZP_06149972.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683227|ref|ZP_06150089.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687537|ref|ZP_06154399.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042757|ref|ZP_06568498.1| ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|293398224|ref|ZP_06642429.1| ferredoxin [Neisseria gonorrhoeae F62]
 gi|304388924|ref|ZP_07370971.1| ferredoxin [Neisseria meningitidis ATCC 13091]
 gi|313667418|ref|YP_004047702.1| ferredoxin [Neisseria lactamica ST-640]
 gi|7225340|gb|AAF40582.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|59719075|gb|AAW90480.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|120865707|emb|CAM09434.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|193935192|gb|ACF31016.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          NCCP11945]
 gi|226513780|gb|EEH63125.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|254669373|emb|CBA08496.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254671137|emb|CBA08170.1| Ferredoxin [Neisseria meningitidis alpha153]
 gi|261391661|emb|CAX49109.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|268547145|gb|EEZ42563.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|268551593|gb|EEZ46612.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584179|gb|EEZ48855.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586521|gb|EEZ51197.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588783|gb|EEZ53459.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623394|gb|EEZ55794.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623511|gb|EEZ55911.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627821|gb|EEZ60221.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|269210270|gb|EEZ76725.1| ferredoxin [Neisseria lactamica ATCC 23970]
 gi|291013191|gb|EFE05157.1| ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|291611487|gb|EFF40557.1| ferredoxin [Neisseria gonorrhoeae F62]
 gi|304337058|gb|EFM03245.1| ferredoxin [Neisseria meningitidis ATCC 13091]
 gi|309378534|emb|CBX22806.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313004880|emb|CBN86306.1| putative ferredoxin [Neisseria lactamica 020-06]
 gi|316985968|gb|EFV64907.1| ferredoxin [Neisseria meningitidis H44/76]
 gi|317165359|gb|ADV08900.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
 gi|325133190|gb|EGC55861.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M6190]
 gi|325135232|gb|EGC57857.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M13399]
 gi|325138802|gb|EGC61354.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          ES14902]
 gi|325141268|gb|EGC63767.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          CU385]
 gi|325145445|gb|EGC67721.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240013]
 gi|325197412|gb|ADY92868.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          G2136]
 gi|325199337|gb|ADY94792.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          H44/76]
 gi|325203042|gb|ADY98496.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240149]
 gi|325203243|gb|ADY98696.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240355]
 gi|325205216|gb|ADZ00669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M04-240196]
 gi|325207160|gb|ADZ02612.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          NZ-05/33]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|150017381|ref|YP_001309635.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903846|gb|ABR34679.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
          Length = 282

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           C   C VD          I  D+CI CG C   CP  A+K + E G+ ++L    ++   
Sbjct: 171 CERTCKVDAISMVHKKAVIDYDKCISCGQCVKACPFKAMKLEKE-GIAVYL--GGKFGRN 227

Query: 77  WPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
              I  + E L    +++ V +   +Y+  N 
Sbjct: 228 L-RIGNRLERLYQPDELEAVTEMVIEYYKNNA 258


>gi|325972699|ref|YP_004248890.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
 gi|324027937|gb|ADY14696.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
          Length = 486

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 16/83 (19%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC---------------- 46
           Y++++ C  C    C+  CP DC         I    CI CG C                
Sbjct: 113 YLISDACRGCFARPCLANCPKDCITFSGGQAHIDESRCIRCGKCKEVCPFHAVVHIPVPC 172

Query: 47  EPECPVDAIKPDTEPGLELWLKI 69
           E  CPV+A+K + E  +E+  K+
Sbjct: 173 EEACPVNAVKKNAEGYVEIDYKL 195


>gi|261403278|ref|YP_003247502.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370271|gb|ACX73020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    C+  CP +      N + +  ++CI CG+C   CP  AI+ D      + LK
Sbjct: 33  CMHCDKNPCLYACPENAIERINNKVVVIEEKCIGCGLCALACPFGAIRIDG-----VALK 87

Query: 69  INSEYATQWPNITTKKESLPSAA 91
            N  Y     ++   KE  P+ A
Sbjct: 88  CNGCYKR---DVEVCKEVCPTGA 107


>gi|152991176|ref|YP_001356898.1| molybdopterin oxidoreductase, iron sulfur subunit [Nitratiruptor
           sp. SB155-2]
 gi|151423037|dbj|BAF70541.1| molybdopterin oxidoreductase, iron sulfur subunit [Nitratiruptor
           sp. SB155-2]
          Length = 519

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVD 53
           +   ++ +C  C    C++ CP + + + EN + IH DE CI C  C   CP D
Sbjct: 80  LQMFLSMSCNHCIDPACLKGCPTNSYIKIENGIVIHDDEACIGCQYCTWNCPYD 133


>gi|146281594|ref|YP_001171747.1| electron transport complex protein RnfC [Pseudomonas stutzeri
           A1501]
 gi|145569799|gb|ABP78905.1| electron transport complex protein rnfC [Pseudomonas stutzeri
           A1501]
          Length = 827

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI----------HPDECIDCGVCEPECP 51
           CI C   +C E CPV    +  +F A+          H  +CI+CG C   CP
Sbjct: 371 CIRCG--ECAEACPVSLLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP 421


>gi|134046740|ref|YP_001098225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664365|gb|ABO36011.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 395

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFY--------EGENFLAIHP----DECIDCGVCEPECPVDAI 55
           +C+LC+   CV++CP +           + E  +   P     EC+ CGVC PECPVDAI
Sbjct: 90  HCVLCEK--CVDICPAEIISLPGKVEKPKKEVVIPQEPIAVTKECVACGVCVPECPVDAI 147

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +    ++    I     +Q    T    ++  A K+   +QK  K F+ N
Sbjct: 148 SLEDIAVIDTDKCIYCTVCSQ----TCPWNAIFVAGKVPQKRQKTIKSFTVN 195


>gi|118472264|ref|YP_886216.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118173551|gb|ABK74447.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 304

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 122 MASDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIE 175


>gi|148652690|ref|YP_001279783.1| electron transport complex, RnfABCDGE type subunit B [Psychrobacter
           sp. PRwf-1]
 gi|148571774|gb|ABQ93833.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter sp. PRwf-1]
          Length = 275

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 20/100 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++CI C  T C+  CPVD     G++   I  D C  C +C   CPVD I          
Sbjct: 113 DDCIGC--TKCIPACPVDAIIGTGKHMHTIFTDLCTGCELCLAPCPVDCID--------- 161

Query: 66  WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
            +++  + A + P    K+++         ++Q+Y  + +
Sbjct: 162 LVELPRDIALETPEYRAKEQA--------HLRQRYHTHLN 193


>gi|92114243|ref|YP_574171.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91797333|gb|ABE59472.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 335

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 76  VAFIREAECIGC--TKCIQACPVDAILGAAKQMHTVIAGECTGCELCVAPCPVDCI 129


>gi|83310776|ref|YP_421040.1| pyruvate with ferredoxin oxidoreductase and related 2-oxoacid
          with ferredoxin oxidoreductase [Magnetospirillum
          magneticum AMB-1]
 gi|82945617|dbj|BAE50481.1| Pyruvate with ferredoxin oxidoreductase and related 2-oxoacid
          with ferredoxin oxidoreductase [Magnetospirillum
          magneticum AMB-1]
          Length = 89

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V  + C+ C    C   CPV C  E   +   + D C  CG+C  ECP  AIK
Sbjct: 32 VDRDRCVKC--ATCWLYCPVQCVVEKAAWFDFNYDYCKGCGICAEECPHRAIK 82


>gi|238763933|ref|ZP_04624890.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC
           33638]
 gi|238784993|ref|ZP_04628991.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC
           43970]
 gi|238697901|gb|EEP90661.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC
           33638]
 gi|238714109|gb|EEQ06123.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC
           43970]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|297521336|ref|ZP_06939722.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           OP50]
          Length = 104

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|146303585|ref|YP_001190901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701835|gb|ABP94977.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 489

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 9   CILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+  DC + CPV        F + + F A    +CI  G C   CP D I
Sbjct: 422 CLQCRTVDCAKACPVGLTDMRASFIKKQEFKAF---KCIGAGGCIEACPHDNI 471


>gi|238798411|ref|ZP_04641892.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC
           43969]
 gi|238717725|gb|EEQ09560.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC
           43969]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|309781131|ref|ZP_07675869.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
 gi|308920197|gb|EFP65856.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
          Length = 276

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           E CI C  T C++ CPVD        +  +  D C  C +C P CPVD I
Sbjct: 92  ERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCI 139


>gi|304398209|ref|ZP_07380083.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB]
 gi|308187597|ref|YP_003931728.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1]
 gi|304354075|gb|EFM18448.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB]
 gi|308058107|gb|ADO10279.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|242239961|ref|YP_002988142.1| NADH dehydrogenase subunit I [Dickeya dadantii Ech703]
 gi|242132018|gb|ACS86320.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech703]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|225075481|ref|ZP_03718680.1| hypothetical protein NEIFLAOT_00486 [Neisseria flavescens
          NRL30031/H210]
 gi|241760438|ref|ZP_04758532.1| ferredoxin [Neisseria flavescens SK114]
 gi|261364710|ref|ZP_05977593.1| ferredoxin [Neisseria mucosa ATCC 25996]
 gi|261380556|ref|ZP_05985129.1| hypothetical protein NEISUBOT_04575 [Neisseria subflava NJ9703]
 gi|224953200|gb|EEG34409.1| hypothetical protein NEIFLAOT_00486 [Neisseria flavescens
          NRL30031/H210]
 gi|241319107|gb|EER55600.1| ferredoxin [Neisseria flavescens SK114]
 gi|284796524|gb|EFC51871.1| ferredoxin [Neisseria subflava NJ9703]
 gi|288567006|gb|EFC88566.1| ferredoxin [Neisseria mucosa ATCC 25996]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|213645876|ref|ZP_03375929.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFELG 123


>gi|156937394|ref|YP_001435190.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ignicoccus hospitalis KIN4/I]
 gi|156566378|gb|ABU81783.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Ignicoccus
           hospitalis KIN4/I]
          Length = 505

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 5   VTENCILCKHTDCV---EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V EN   C    C     VCP +     E  ++I PD+C  CG+C   CP+ ++     P
Sbjct: 115 VPENTFACASPSCRMCKSVCPSNAIRLKEGRVSIDPDKCTSCGLCVAACPLYSLD---MP 171

Query: 62  GL 63
           GL
Sbjct: 172 GL 173


>gi|94264895|ref|ZP_01288669.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454665|gb|EAT04933.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 226

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIH-PDECIDCGVCEPECPVDAI 55
            C  C +  C   CP    ++  EN L +H P  C+ C  C   CP DAI
Sbjct: 52  QCNHCDNAPCTRACPTKAMHKVKENGLTLHEPRRCVGCRACMVSCPYDAI 101


>gi|82778087|ref|YP_404436.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella
           dysenteriae Sd197]
 gi|309786197|ref|ZP_07680825.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617]
 gi|81242235|gb|ABB62945.1| probable iron-sulfur protein of hydrogenase 3 [Shigella dysenteriae
           Sd197]
 gi|308925942|gb|EFP71421.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELVWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|28898701|ref|NP_798306.1| nitrite reductase Fe-S protein NrfC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840172|ref|ZP_01992839.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ3810]
 gi|260363700|ref|ZP_05776484.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus K5030]
 gi|260879733|ref|ZP_05892088.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260898793|ref|ZP_05907234.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus Peru-466]
 gi|260901606|ref|ZP_05910001.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28806919|dbj|BAC60190.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746172|gb|EDM57292.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ3810]
 gi|308086597|gb|EFO36292.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308093420|gb|EFO43115.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308108690|gb|EFO46230.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308113400|gb|EFO50940.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus K5030]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y+ E+   + +H + C+ CG C   CP
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDESTGIVDVHKERCVGCGYCLAACP 141


>gi|327482053|gb|AEA85363.1| D-lactate dehydrogenase, putative [Pseudomonas stutzeri DSM 4166]
          Length = 950

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           D+CI+CG CEP CP + +       + +W  I +
Sbjct: 547 DKCIECGFCEPVCPSNGLTLTPRQRIVIWRDIQA 580


>gi|320102185|ref|YP_004177776.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Isosphaera pallida ATCC 43644]
 gi|319749467|gb|ADV61227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Isosphaera
           pallida ATCC 43644]
          Length = 587

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 35  IHPDECIDCGVCEPECPV 52
           I P++CI CG+CE ECPV
Sbjct: 504 IDPEKCIGCGICEHECPV 521


>gi|298675965|ref|YP_003727715.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methanohalobium evestigatum Z-7303]
 gi|298288953|gb|ADI74919.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalobium evestigatum Z-7303]
          Length = 67

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 17 CVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVDAIK 56
          C EVCPVD F  G N        +   P++CI+C  C   CPVDA++
Sbjct: 16 CYEVCPVDLFDVGNNEEKEIEVAVVARPEDCIECEQCIEVCPVDAVR 62


>gi|194289439|ref|YP_002005346.1| benzoyl-CoA oxygenase component a [Cupriavidus taiwanensis LMG
          19424]
 gi|193223274|emb|CAQ69279.1| Benzoyl-CoA oxygenase component A [Cupriavidus taiwanensis LMG
          19424]
          Length = 414

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     +    +  D C  C  C   CP  AI
Sbjct: 15 EICIRC--NTCEDTCPIDAITHDDRNYVVRADVCNGCNACLSPCPTGAI 61



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHD 35


>gi|157370673|ref|YP_001478662.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157322437|gb|ABV41534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 204

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 30/70 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+     ++ + ++   CI C +C   CP  AI       L +   
Sbjct: 51  CHQCEDAPCAQVCPVNAIRHQDDAIVLNESLCISCKLCGIACPFGAIGFGGSTPLAIPAD 110

Query: 69  INSEYATQWP 78
            N+  A   P
Sbjct: 111 CNTSLALPAP 120


>gi|114773249|ref|ZP_01450484.1| oxidoreductase, FAD-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114546368|gb|EAU49277.1| oxidoreductase, FAD-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 943

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           D+CI+CG CEP CP   +       + +W +I
Sbjct: 539 DKCIECGFCEPVCPSKELTFTPRQRIAIWRRI 570


>gi|83593599|ref|YP_427351.1| ferredoxin [Rhodospirillum rubrum ATCC 11170]
 gi|34148034|gb|AAQ62579.1| FixX [Rhodospirillum rubrum]
 gi|83576513|gb|ABC23064.1| ferredoxin [Rhodospirillum rubrum ATCC 11170]
          Length = 96

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 18 VEVCPVDCFYEGENF-LAIHPDECIDCGVCEPEC 50
          V++CP  C+ EGEN  + + PD C++CG C   C
Sbjct: 41 VDICPAGCYVEGENGKVEVVPDGCMECGTCRIVC 74


>gi|332758139|gb|EGJ88464.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2747-71]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y +  +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLAISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|332289328|ref|YP_004420180.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432224|gb|AEC17283.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 241

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ ++  + I  + C+ C  C   CP DA
Sbjct: 96  LCNHCDNPPCVPVCPVQATYQQKDGIVVIDNERCVGCAYCVQACPYDA 143


>gi|332162382|ref|YP_004298959.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606461|emb|CBY27959.1| NADH-ubiquinone oxidoreductase chain I [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666612|gb|ADZ43256.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + E+        F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|260892256|ref|YP_003238353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
 gi|260864397|gb|ACX51503.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
          Length = 995

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV VCP     +   +  +AI P  C  CG C  ECP  AI+
Sbjct: 927 CVAC--LTCVRVCPYGAPRYTPEKGVVAIEPLACQGCGTCVGECPNAAIE 974


>gi|240102122|ref|YP_002958430.1| formate hydrogenlyase II subunit B (Mhy2B) [Thermococcus
          gammatolerans EJ3]
 gi|239909675|gb|ACS32566.1| formate hydrogenlyase II subunit B (Mhy2B) [Thermococcus
          gammatolerans EJ3]
          Length = 166

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
          NC  C+   CVEVCP +  Y  E+  + + P +CI C +C   CP
Sbjct: 47 NCRHCEKAPCVEVCPTNALYRDEDGAVLLAPQKCIGCLMCGIVCP 91


>gi|227824895|ref|ZP_03989727.1| ferredoxin [Acidaminococcus sp. D21]
 gi|226905394|gb|EEH91312.1| ferredoxin [Acidaminococcus sp. D21]
          Length = 429

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL-WLKINSEYAT 75
          CV+ C V      +    I  D CIDCG C   CP  AI    EP  EL   K+N   AT
Sbjct: 22 CVKKCLVQAIRVRDGKAVIISDRCIDCGECIRCCPTRAIAALVEPLEELKSYKVNIALAT 81


>gi|225154915|ref|ZP_03723412.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224804274|gb|EEG22500.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 70

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDT 59
          YV+   C  C   +C   CP D     ++ + I  + C  CG C   CP +AI+   P T
Sbjct: 7  YVIDRGCKFC--FNCKWTCPADAIVVVDDLMQIDQERCRHCGRCYDNCPNEAIRIIPPAT 64

Query: 60 EPG 62
          +P 
Sbjct: 65 QPA 67


>gi|254481239|ref|ZP_05094484.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
 gi|214038402|gb|EEB79064.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 203

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I   +
Sbjct: 113 VAYIREDECIGC--TKCIQACPVDAILGAAKHMHTVIVSECTGCDLCVEPCPVDCIDMIS 170

Query: 60  EP-GLELW 66
           E   L+ W
Sbjct: 171 EKESLQTW 178


>gi|253698808|ref|YP_003019997.1| NADH dehydrogenase subunit I [Geobacter sp. M21]
 gi|251773658|gb|ACT16239.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
          Length = 176

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 12/61 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGEN      +  I+   CI CG+C   CP  AI
Sbjct: 54  AERCVACYL--CSGACPVDCISMAAAEGENGRRYAAWFRINFSRCILCGMCAEACPTLAI 111

Query: 56  K 56
           +
Sbjct: 112 Q 112


>gi|10945077|emb|CAC14151.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 210

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 89  KCVACEL--CARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 144


>gi|45359250|ref|NP_988807.1| 2-oxoglutarate ferredoxin oxidoreductase subunit delta
          [Methanococcus maripaludis S2]
 gi|134046745|ref|YP_001098230.1| 2-oxoglutarate ferredoxin oxidoreductase subunit delta
          [Methanococcus maripaludis C5]
 gi|159905369|ref|YP_001549031.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|45048125|emb|CAF31243.1| 2-oxoglutarate ferredoxin oxidoreductase, delta (ferredoxin)
          subunit [Methanococcus maripaludis S2]
 gi|132664370|gb|ABO36016.1| 2-oxoglutarate ferredoxin oxidoreductase, delta subunit
          [Methanococcus maripaludis C5]
 gi|159886862|gb|ABX01799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 68

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 1  MTYVVTENCILCKHTD-CVEVCPVDCFYEGENFLA--------IHPDECIDCGVCEPECP 51
          M  ++ EN   CK  D C+EVCP D + + E            ++P EC +C +C  +CP
Sbjct: 1  MKIIIDEN--YCKGCDICIEVCPKDVYKKSETLNKKGIYPPNPVNPKECTNCQLCILQCP 58

Query: 52 VDAIKPDTE 60
            AI  +TE
Sbjct: 59 DQAITVETE 67


>gi|86148458|ref|ZP_01066748.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio sp. MED222]
 gi|85833755|gb|EAQ51923.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio sp. MED222]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           Y  T N C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 92  YRFTRNSCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLLACP 143


>gi|315179710|gb|ADT86624.1| tetrathionate reductase, subunit B [Vibrio furnissii NCTC 11218]
          Length = 255

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|294102249|ref|YP_003554107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617229|gb|ADE57383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
          Length = 220

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E CI CK   C+ VCP +   F E E  + IH D C  C  C   CPV  +    E
Sbjct: 64  ERCIGCKL--CIRVCPANAIEFLEEEKKIQIHVDRCCFCAQCTEICPVKCLSMSKE 117


>gi|289192303|ref|YP_003458244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938753|gb|ADC69508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 391

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E CI C    CVEVCP +    + EN + I P  C  C +C   CPV+A        
Sbjct: 202 VNAEKCIYC--LKCVEVCPGNMIKVDKENMIVIPPKSCPACKLCVNTCPVNA-------- 251

Query: 63  LELWLKINSEY 73
           LEL +K++S +
Sbjct: 252 LELEVKLSSPH 262


>gi|288575184|ref|ZP_06393540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568466|gb|EFC90024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 288

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C+ C    C   CPV           I  D CI CG C   CP  AI  D    +  +
Sbjct: 151 EKCVGCGR--CFRNCPVKAISMTGGKAVIDKDVCIGCGECLTVCPASAISLDWRTDVVQF 208

Query: 67  LKINSEYA 74
            +  +EYA
Sbjct: 209 HRRMAEYA 216


>gi|218884559|ref|YP_002428941.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n]
 gi|218766175|gb|ACL11574.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n]
          Length = 602

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 12/61 (19%)

Query: 3  YVVTENCILCKHTDCVEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y   + C L    +C+  CPV+               ++ I+ + CI CG+C  +CP +A
Sbjct: 11 YCKPDKCSL----ECIRFCPVNRGKRKKAIELSSDGKYVIIYEETCIGCGICVKKCPFNA 66

Query: 55 I 55
          I
Sbjct: 67 I 67


>gi|126459791|ref|YP_001056069.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249512|gb|ABO08603.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum calidifontis JCM 11548]
          Length = 593

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 35  IHPDECIDCGVCEPECPVDAIK--PDTEPGLELW 66
           I P  C+ CGVC   CPV AIK   D    LE+W
Sbjct: 557 IDPALCVGCGVCAEVCPVGAIKGEGDRAKWLEVW 590


>gi|114762113|ref|ZP_01441581.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545137|gb|EAU48140.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 249

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    CV VCP    Y+   +  + +  + CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCDDAPCVTVCPTGASYKRVEDGIVLVEEEACIGCGLCAWACPYGARELDLAAGV 138


>gi|108803761|ref|YP_643698.1| 2-oxoacid:acceptor oxidoreductase subunit delta,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
 gi|108765004|gb|ABG03886.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
          Length = 403

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVD 53
           + CI C+   C   CP +CF   E    +HP   + C  CG+C   CPV+
Sbjct: 291 DTCIKCRQ--CWIDCPDECFEVTEE--GLHPINYEYCTGCGICSQVCPVE 336


>gi|328953517|ref|YP_004370851.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfobacca acetoxidans DSM 11109]
 gi|328453841|gb|AEB09670.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfobacca acetoxidans DSM 11109]
          Length = 99

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 17 CVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  +CP  CF   +    L + PD CI CG CE  CP  AI     P +
Sbjct: 41 CAALCPKHCFTRDDTGGPLVVDPDSCIGCGWCEIHCPDFAISVHPRPTI 89


>gi|325267342|ref|ZP_08134004.1| ferredoxin [Kingella denitrificans ATCC 33394]
 gi|324981279|gb|EGC16929.1| ferredoxin [Kingella denitrificans ATCC 33394]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|319639534|ref|ZP_07994281.1| ferredoxin [Neisseria mucosa C102]
 gi|317399105|gb|EFV79779.1| ferredoxin [Neisseria mucosa C102]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|307131807|ref|YP_003883823.1| NADH:ubiquinone oxidoreductase subunit I [Dickeya dadantii 3937]
 gi|306529336|gb|ADM99266.1| NADH:ubiquinone oxidoreductase, chain I [Dickeya dadantii 3937]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|303256134|ref|ZP_07342151.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302861104|gb|EFL84178.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 192

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    CV+ CP    Y  EN L  + P++C+ C  C   CP DA     + GL +
Sbjct: 67  CQHCSDAPCVKTCPFGANYYDENGLVRNDPNKCVGCNYCVASCPYDARWSHPDNGLPM 124


>gi|296109071|ref|YP_003616020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295433885|gb|ADG13056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 392

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VVT+NC+ CK   C+  CPV+   F E  N + I  ++CI C +C   CP +AI
Sbjct: 135 VVTDNCVGCKI--CIPECPVNAITFNEETNKVEIDKNKCIYCSICAQTCPWNAI 186


>gi|238920560|ref|YP_002934075.1| NADH dehydrogenase subunit I [Edwardsiella ictaluri 93-146]
 gi|269139723|ref|YP_003296424.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Edwardsiella tarda EIB202]
 gi|294637172|ref|ZP_06715480.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC
           23685]
 gi|259514773|sp|C5B8H9|NUOI_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|238870129|gb|ACR69840.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267985384|gb|ACY85213.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Edwardsiella tarda EIB202]
 gi|291089636|gb|EFE22197.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC
           23685]
 gi|304559590|gb|ADM42254.1| NADH-ubiquinone oxidoreductase chain I [Edwardsiella tarda FL6-60]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 14/69 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  A+
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAL 114

Query: 56  K--PDTEPG 62
           +  PD E G
Sbjct: 115 QLTPDFEMG 123


>gi|257387968|ref|YP_003177741.1| NADH-quinone oxidoreductase, chain I [Halomicrobium mukohataei
          DSM 12286]
 gi|257170275|gb|ACV48034.1| NADH-quinone oxidoreductase, chain I [Halomicrobium mukohataei
          DSM 12286]
          Length = 153

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCP-------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP        D    GE +  +H  +CI C +CE  CPVDAI
Sbjct: 45 ERCIWCRQ--CENVCPNNTIQIVTDDQRNGEQY-NLHIGQCIYCRLCEEVCPVDAI 97


>gi|170769899|ref|ZP_02904352.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia albertii
           TW07627]
 gi|170121193|gb|EDS90124.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia albertii
           TW07627]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 147


>gi|167948048|ref|ZP_02535122.1| polysulfide reductase, subunit B, putative [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 177

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           LC H D   C+ VCP    Y+ +N  + +  D C+ C  C   CP DA +  T   +E  
Sbjct: 26  LCNHCDNPPCMSVCPTGATYKMDNGIVMVDEDLCMGCRACAMACPYDARRAVTYDDVEKG 85

Query: 67  LKINSE-YATQWPNI 80
                E Y  + P++
Sbjct: 86  KAFYGEAYRRERPSV 100


>gi|167772719|ref|ZP_02444772.1| hypothetical protein ANACOL_04101 [Anaerotruncus colihominis DSM
           17241]
 gi|167665197|gb|EDS09327.1| hypothetical protein ANACOL_04101 [Anaerotruncus colihominis DSM
           17241]
          Length = 415

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D C+ CG+C   CPV AI PD
Sbjct: 343 DRCVSCGLCARRCPVGAIPPD 363


>gi|91772370|ref|YP_565062.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91711385|gb|ABE51312.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 128

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C+ VCPV  F   +++ L +  D+CI CG C   CP +A+
Sbjct: 77  EECVECGA--CISVCPVGVFSFADDWSLEVDTDKCIQCGTCLTMCPHNAL 124


>gi|220930863|ref|YP_002507771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
 gi|219992173|gb|ACL68776.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C+ C++  C   CP   F+   N + I  + CI+CG C   CP + I     PG
Sbjct: 33 CLDCENKPCTYYCPARVFFWEVNEIKILFERCIECGACPWGCPRENIDWVYPPG 86


>gi|182420185|ref|ZP_02951416.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237667529|ref|ZP_04527513.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182375987|gb|EDT73577.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237655877|gb|EEP53433.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 421

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV T  CI C    C  +CP++         + +  +    C+ CGVC   CP DAIK
Sbjct: 288 YVDTHKCIGC--GKCTNICPMEAIGVTTIGKDKYAKVDDKLCLGCGVCVKNCPKDAIK 343


>gi|153872014|ref|ZP_02001030.1| Thiosulfate reductase subunit B [Beggiatoa sp. PS]
 gi|152071520|gb|EDN68970.1| Thiosulfate reductase  subunit B [Beggiatoa sp. PS]
          Length = 247

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 12  CKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA--IKPDT 59
           C+H D   C+E CP    Y+ E+ + +  D  C  C +C P CP DA  + P+T
Sbjct: 60  CQHCDDAPCIEACPSGAAYKREDGMVLQDDAICSGCELCVPACPYDARWLNPET 113


>gi|187927967|ref|YP_001898454.1| ferredoxin [Ralstonia pickettii 12J]
 gi|187724857|gb|ACD26022.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12J]
          Length = 276

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  +  E CI C  T C++ CPVD        +  +  D C  C +C P CPVD I
Sbjct: 86  IAVIDPERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCI 139


>gi|91772648|ref|YP_565340.1| nitrite and sulphite reductase [Methanococcoides burtonii DSM 6242]
 gi|91711663|gb|ABE51590.1| coenzyme F420-dependent sulfite reductase [Methanococcoides
           burtonii DSM 6242]
          Length = 639

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE C  C    C E+C ++          I  D CI+CG C   CP +A   D + G 
Sbjct: 514 VDTEKCTGCGR--CSELCKLNAISVISGKAVIDRDLCINCGWCVRGCPHEAAVED-QKGY 570

Query: 64  ELWLKIN-SEYATQWPNITT--KKESLPSAAKMDGVKQKYEKY 103
            +W+  N     T    + T   KE +PS   +D V + + KY
Sbjct: 571 SVWIGGNDGRRPTNGVLLKTFCTKEEIPSL--VDKVGKTFVKY 611


>gi|110642843|ref|YP_670573.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           536]
 gi|191171357|ref|ZP_03032906.1| formate hydrogenlyase, subunit F [Escherichia coli F11]
 gi|300941096|ref|ZP_07155608.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|300975044|ref|ZP_07172845.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1]
 gi|312965022|ref|ZP_07779262.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75]
 gi|331648438|ref|ZP_08349526.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M605]
 gi|110344435|gb|ABG70672.1| formate hydrogenase-3 component F [Escherichia coli 536]
 gi|190908291|gb|EDV67881.1| formate hydrogenlyase, subunit F [Escherichia coli F11]
 gi|281179723|dbj|BAI56053.1| formate hydrogenlyase subunit [Escherichia coli SE15]
 gi|300308812|gb|EFJ63332.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1]
 gi|300454139|gb|EFK17632.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|312290578|gb|EFR18458.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75]
 gi|324005682|gb|EGB74901.1| hydrogenase 4 subunit H [Escherichia coli MS 57-2]
 gi|324013675|gb|EGB82894.1| hydrogenase 4 subunit H [Escherichia coli MS 60-1]
 gi|331042185|gb|EGI14327.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M605]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|332799818|ref|YP_004461317.1| RnfABCDGE type electron transport complex subunit B
           [Tepidanaerobacter sp. Re1]
 gi|332697553|gb|AEE92010.1| electron transport complex, RnfABCDGE type, B subunit
           [Tepidanaerobacter sp. Re1]
          Length = 345

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
             ++ E CI C  T C + CPV+    E +    +  D CI CG+C+ +C  DAIK
Sbjct: 273 AVIIEEKCIGC--TLCAKNCPVNAISGEVKKVHKVDQDICIGCGICQEKCRKDAIK 326



 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +  CI CK   C +VCP D  +   N  AI  ++C +C +C  +CP   I
Sbjct: 214 VCSIGCIACKQ--CEKVCPFDAIHVNNNVAAIDYEKCRNCMLCVEKCPTGTI 263


>gi|310778118|ref|YP_003966451.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309747441|gb|ADO82103.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 55

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M  +  E CI C    C   CPV      +    I  D C+DCG C   CPVDAI  
Sbjct: 1  MYVIDKEACIACGA--CEGTCPVSAISAADGKYEIS-DACVDCGACAGACPVDAIAA 54


>gi|282162750|ref|YP_003355135.1| hypothetical protein MCP_0080 [Methanocella paludicola SANAE]
 gi|282155064|dbj|BAI60152.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 461

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDA 54
           + +   + C++C+     EVCPV      G N   +  D C  CG C+  CPV+ 
Sbjct: 397 IAWAQNKKCLICE-----EVCPVKAIKSTGRNRPVVSEDVCAGCGSCQLNCPVEG 446


>gi|218709918|ref|YP_002417539.1| hypothetical protein VS_1931 [Vibrio splendidus LGP32]
 gi|218322937|emb|CAV19114.1| Protein nrfC homolog precursor [Vibrio splendidus LGP32]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           Y  T N C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 92  YRFTRNSCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACP 143


>gi|121595761|ref|YP_987657.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120607841|gb|ABM43581.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 699

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 568 DRCTLC--LSCVSACPAGALQDNPQAPQLRFTEQNCVQCGLCERTCPENAI 616


>gi|157963673|ref|YP_001503707.1| dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
 gi|157848673|gb|ABV89172.1| Dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y  + +C  C    C   CP    ++   +  + IH D CI C  C   CP DA + D
Sbjct: 58  FAYYTSISCNHCNTPACTTACPTGAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLD 117

Query: 59  TEPG 62
              G
Sbjct: 118 EARG 121


>gi|154174684|ref|YP_001407618.1| electron transport protein HydN [Campylobacter curvus 525.92]
 gi|112802520|gb|EAT99864.1| electron transport protein HydN [Campylobacter curvus 525.92]
          Length = 189

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPVQCRQCDDGPCANVCPTGALRFDDNCIELHEEICIGCKMCTIACPYGAISSSAE 104


>gi|90578855|ref|ZP_01234665.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
 gi|90439688|gb|EAS64869.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
          Length = 215

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C H +C +VCP    ++ E    + ++ D CI C  C   CP    +  
Sbjct: 67  FAYYLSISCNHCTHPECTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGEPQYS 126

Query: 59  TEPG 62
            E G
Sbjct: 127 EEKG 130


>gi|59712159|ref|YP_204935.1| formate-dependent nitrite reductase, 4Fe4S subunit [Vibrio fischeri
           ES114]
 gi|59480260|gb|AAW86047.1| formate-dependent nitrite reductase, 4Fe4S subunit [Vibrio fischeri
           ES114]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENAPCVMVCPTGAAYKDETTGIVDVHNEKCVGCGYCLAACP 143


>gi|116754868|ref|YP_843986.1| methyl-viologen-reducing hydrogenase, delta subunit [Methanosaeta
           thermophila PT]
 gi|116666319|gb|ABK15346.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta
           thermophila PT]
          Length = 791

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +V  + CI C+   CV+ CP       +    +    C  CG C   CPVDAI+
Sbjct: 576 VAFVDRDKCIGCRL--CVDTCPSRAISVKDTAF-VDEARCKGCGTCAAACPVDAIE 628


>gi|330998930|ref|ZP_08322657.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329576144|gb|EGG57663.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 253

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECP 51
           C  C++  CV+VCP    +     + +H DE CI C +C+  CP
Sbjct: 62  CNHCENPQCVKVCPTGAMFISPEGVVLHNDEVCIGCRLCQKACP 105


>gi|238755292|ref|ZP_04616636.1| Formate hydrogenlyase subunit 2 [Yersinia ruckeri ATCC 29473]
 gi|238706526|gb|EEP98899.1| Formate hydrogenlyase subunit 2 [Yersinia ruckeri ATCC 29473]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      N + ++ + C+ C +C   CP  AI       +++   
Sbjct: 57  CHQCEDAPCAQVCPVNAITHENNAIHLNENLCVSCKLCGIACPFGAITFSASTPVDIPRD 116

Query: 69  INSEYATQWPN 79
            N+  A   P 
Sbjct: 117 CNTSKALPAPR 127


>gi|167770142|ref|ZP_02442195.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
 gi|167667464|gb|EDS11594.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
          Length = 479

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V   C  C    C   CP       +    I  ++C++CG C   CP  AI   T P
Sbjct: 95  YHVGSACRGCIAHRCEHACPTGAISVHDGKAHIDQEKCVECGRCATACPYSAIMKYTRP 153


>gi|153003957|ref|YP_001378282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027530|gb|ABS25298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 100

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M   +T+ CI C    C   CP     +GE+   I P+ C +C        C+  CPVD 
Sbjct: 1   MATKITDECINCGA--CEPECPNSAITQGEDIYVIDPNLCTECVGFHGEEACQAVCPVDC 58

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
             PD E G E    + +  AT  P+     +  P  A++     ++ K
Sbjct: 59  CIPDEEKG-ETEEVLYARLATIHPD-----KQFPPLAELTAELSRFRK 100


>gi|70734308|ref|YP_257948.1| FAD-binding oxidoreductase [Pseudomonas fluorescens Pf-5]
 gi|68348607|gb|AAY96213.1| oxidoreductase, FAD-binding [Pseudomonas fluorescens Pf-5]
          Length = 936

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           D+CI+CG CEP CP   +       + +W  I +
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVIWRDIQA 571


>gi|218767189|ref|YP_002341701.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051197|emb|CAM07468.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|319411394|emb|CBY91805.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325129159|gb|EGC52007.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          N1568]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|89074812|ref|ZP_01161266.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
 gi|89049387|gb|EAR54949.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
          Length = 204

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++C+H +   C EVCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 49  VMCRHCEDAPCAEVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 100


>gi|194437237|ref|ZP_03069335.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           101-1]
 gi|194423793|gb|EDX39782.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           101-1]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYHVRFIHPVTK 147


>gi|319794409|ref|YP_004156049.1| electron transport complex, rnfABCdge type, b subunit [Variovorax
           paradoxus EPS]
 gi|315596872|gb|ADU37938.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus EPS]
          Length = 211

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M  +    CI C  T C++ CP D      +    +    C  C +C P CPVD I  + 
Sbjct: 76  MAVIDEAWCIGC--TLCLDACPTDAIVGINKRMHTVVEAHCTGCELCIPVCPVDCISLEV 133

Query: 60  E----PGLELWLKINSEYATQWPNI------TTKKESLPSAA 91
           E     G + W +  +E A Q   +      T K+E+ P+ A
Sbjct: 134 ETPGRSGWQAWSEAQAEAALQRYKLHGQHRATAKREAEPAPA 175


>gi|260768009|ref|ZP_05876943.1| tetrathionate reductase subunit B [Vibrio furnissii CIP 102972]
 gi|260616039|gb|EEX41224.1| tetrathionate reductase subunit B [Vibrio furnissii CIP 102972]
          Length = 255

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|297568400|ref|YP_003689744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924315|gb|ADH85125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 189

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             C  C++  CV+VCP    Y+ E+  +AI    CI C  C   CP DA
Sbjct: 66  SQCQHCQNPPCVKVCPTSASYQTEDGLVAIDYKRCIVCASCILACPYDA 114


>gi|222099246|ref|YP_002533814.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
          DSM 4359]
 gi|221571636|gb|ACM22448.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
          DSM 4359]
          Length = 507

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAI 55
          CI C    CV VC     Y  EN   ++ +  +C+ C  CE  CP +AI
Sbjct: 19 CIRC--LACVRVCSYGANYYDENANRVYTENYKCVGCHFCEAICPTEAI 65


>gi|254462867|ref|ZP_05076283.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206679456|gb|EDZ43943.1| 4Fe-4S binding domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 257

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++C+ C+   CV VCP    Y+   +  + ++  +CI CG+C   CP  A + D 
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDA 134


>gi|160942429|ref|ZP_02089736.1| hypothetical protein CLOBOL_07313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434681|gb|EDP12448.1| hypothetical protein CLOBOL_07313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 568

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 16/65 (24%)

Query: 9   CILCKHTDCVEVC-------PVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDA 54
           CILC   DCV +C        +D  Y G   L        I   +C++CG C   CP  A
Sbjct: 145 CILCG--DCVRMCDNVQSVNAIDFAYRGTEALVTPAFNKNIAETDCVNCGQCRAVCPTGA 202

Query: 55  IKPDT 59
           I  +T
Sbjct: 203 ISINT 207


>gi|150401850|ref|YP_001325616.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014553|gb|ABR57004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 61

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 17 CVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C + CP D F  EG   +  + DEC  C +CE  CP DA+K
Sbjct: 18 CKDACPTDVFGVEGSKIVVSNADECTFCMMCEDLCPADAVK 58


>gi|45357667|ref|NP_987224.1| polyferredoxin [Methanococcus maripaludis S2]
 gi|45047227|emb|CAF29660.1| polyferredoxin [Methanococcus maripaludis S2]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 10  ILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           I+C+H   C+ VCPVD     +N  ++ P++CI CGVC   C +  +K
Sbjct: 69  IICEHCGACLNVCPVDAI--EKNRFSVDPEKCIKCGVCSIFCTIPILK 114


>gi|332880702|ref|ZP_08448375.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681336|gb|EGJ54260.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 480

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y VT  C  C    C   CP D   Y+ E    I  ++CI CG C   CP  AI
Sbjct: 113 INYEVTNLCRGCAARPCYNNCPKDAIHYDSEGKAYIDHEKCISCGRCHQVCPYHAI 168


>gi|327311122|ref|YP_004338019.1| Formate dehydrogenase subunit beta [Thermoproteus uzoniensis
           768-20]
 gi|326947601|gb|AEA12707.1| Formate dehydrogenase, beta subunit [Thermoproteus uzoniensis
           768-20]
          Length = 281

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
            C+ C +  C   CP        E  + I+ D+CI CG CE  CP D
Sbjct: 94  QCMHCVNPPCARACPSGAISVTPEGAVVINKDQCIGCGFCENACPYD 140


>gi|323966867|gb|EGB62296.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251443|gb|EGE63129.1| formate hydrogenlyase subunit 6 [Escherichia coli STEC_7v]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|312222247|emb|CBY02187.1| hypothetical protein [Leptosphaeria maculans]
          Length = 230

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 27/105 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI 
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAIV 186

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                        N+EYAT     TT++E L +  K+     K+E
Sbjct: 187 EGP----------NTEYAT-----TTREELLYNKEKLLSNGDKWE 216


>gi|303243584|ref|ZP_07329926.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486145|gb|EFL49067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 154

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CILC   +C+E CP +  ++  + + I  ++C+ CG C   CPV+A+K
Sbjct: 99  CILC--GECLE-CPYNAIFKNGHLIEIDNNKCMLCGDCIAICPVNALK 143


>gi|298373293|ref|ZP_06983282.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274345|gb|EFI15897.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 491

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP +  +  +N  A I  D CI CG+C   CP  AI
Sbjct: 112 INYEITNLCKGCVARGCYTNCPKNAVHFQKNGQAQIDHDACISCGICHQSCPYHAI 167


>gi|284049133|ref|YP_003399472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953354|gb|ADB48157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 250

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CV +CPV+  + GE + A+  D C+ C  C   CP  AI
Sbjct: 187 ECVRLCPVENIHLGEKY-AVMGDHCLHCLACLHGCPHQAI 225


>gi|222836452|gb|EEE74859.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   Y+ ++  + I    CI C  C   CP DA
Sbjct: 96  LCNHCDNPPCVPVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDA 143


>gi|167771050|ref|ZP_02443103.1| hypothetical protein ANACOL_02404 [Anaerotruncus colihominis DSM
           17241]
 gi|167666720|gb|EDS10850.1| hypothetical protein ANACOL_02404 [Anaerotruncus colihominis DSM
           17241]
          Length = 799

 Score = 35.0 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           E C LCK T C +  P+     G + LAI   +C+ CG+C   CP
Sbjct: 749 EGCQLCK-TICTDFAPL---VTGPDQLAIDRTQCVACGMCYNRCP 789


>gi|157374544|ref|YP_001473144.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316918|gb|ABV36016.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             +  + +C  C H  CV+ CP    ++   +  + I    C+ C  C   CP DA + D
Sbjct: 62  FAHYTSISCNHCSHPVCVKACPTGACHKRKSDGLVHIEASLCVGCQSCSRACPYDAPQFD 121

Query: 59  TEPGL 63
           +E G+
Sbjct: 122 SERGV 126


>gi|90412117|ref|ZP_01220123.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
 gi|90326841|gb|EAS43226.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
          Length = 192

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+
Sbjct: 105 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIE 159


>gi|329118705|ref|ZP_08247406.1| ferredoxin [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465208|gb|EGF11492.1| ferredoxin [Neisseria bacilliformis ATCC BAA-1200]
          Length = 83

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|322433771|ref|YP_004215983.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidobacterium sp. MP5ACTX9]
 gi|321161498|gb|ADW67203.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidobacterium sp. MP5ACTX9]
          Length = 529

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           + ++  C  C   DC++ CPVD + +   + + +H  D CI C  C   CP    + + E
Sbjct: 99  HYLSMGCNHCLDADCLKGCPVDAYTKDPVSGIVLHSADACIGCSYCVWNCPYSVPQYNPE 158

Query: 61  PGL 63
            G+
Sbjct: 159 RGV 161


>gi|289191701|ref|YP_003457642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938151|gb|ADC68906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 389

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E CI C    CVEVCP +    + EN + I P  C  C +C   CPV+A        
Sbjct: 203 VNAEKCIYC--LKCVEVCPGNMIKVDKENMIVIPPKSCPACKLCVNTCPVNA-------- 252

Query: 63  LELWLKINSEY 73
           LEL +K++S +
Sbjct: 253 LELEVKLSSPH 263


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C  T C  VCPVDC   E +    I    CI CG C   C   A+
Sbjct: 566 EKCVGC--TRCARVCPVDCISGEVKKPHLIDQRGCIRCGECLKACNFAAV 613


>gi|149194896|ref|ZP_01871990.1| ferredoxin [Caminibacter mediatlanticus TB-2]
 gi|149135055|gb|EDM23537.1| ferredoxin [Caminibacter mediatlanticus TB-2]
          Length = 84

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  + E CI C    CV+ CP      G+    I PD C +C        C   CPVDA
Sbjct: 1  MSLKINEECIACDA--CVDECPNGAIEPGDPIYEIDPDLCTECIEYGGEPQCVQVCPVDA 58

Query: 55 IKPD---TEPGLELWLK 68
          I PD    E   EL LK
Sbjct: 59 IVPDPDNVETAKELKLK 75


>gi|20092397|ref|NP_618472.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19917651|gb|AAM06952.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 72

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 16 DCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +C +VCPV+ F      EG+  +   P++CI+C  C   CP DAI+
Sbjct: 23 ECYDVCPVELFDAEETEEGKRAVVARPEDCIECEQCVDACPTDAIE 68


>gi|238789980|ref|ZP_04633759.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
 gi|238721928|gb|EEQ13589.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
          Length = 205

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++  C  C    CV  CP    Y+ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 58  FNYYLSIACNHCSSPTCVTGCPTGAMYKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 117

Query: 59  TEPGL 63
            +  L
Sbjct: 118 AKKKL 122


>gi|313673723|ref|YP_004051834.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940479|gb|ADR19671.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 501

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 19/66 (28%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVD---CFYEGENFL-----------AIHPDECIDCGVC 46
           + Y    NC++C+     E CP      ++E  N L            ++P+ CI CG+C
Sbjct: 420 LPYAYNVNCMVCE-----EHCPTSPKAIYFEDHNILKDGREVIIKKPVVNPNLCIGCGIC 474

Query: 47  EPECPV 52
             +CPV
Sbjct: 475 TYKCPV 480



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 17  CVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C+ +CP+  FY    +   F     D C +CG+C   C V A      PGLE++
Sbjct: 212 CIYLCPLGAFYGLLSKHSLFKINRSDSCNNCGICNTHCTVSA-----NPGLEVF 260


>gi|218778375|ref|YP_002429693.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759759|gb|ACL02225.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 774

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           V  C +DC   G          C DCG+CE  CP  AI    EPG    + ++ E
Sbjct: 703 VNTCAMDCSSCGT---------CRDCGICEAICPQAAITRVEEPGKRFEMVVDPE 748


>gi|160935395|ref|ZP_02082777.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441753|gb|EDP19453.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y +T  C  C   +C+  CP  C    +    I  + CI CG C   CP  A+    E G
Sbjct: 173 YFITRQCRGC--GNCLSKCPQTCITTAQVPFEIQKEHCIRCGNCLEVCPFGAVVRREEDG 230


>gi|152979394|ref|YP_001345023.1| electron transport complex protein RnfB [Actinobacillus
           succinogenes 130Z]
 gi|150841117|gb|ABR75088.1| electron transport complex, RnfABCDGE type, B subunit
           [Actinobacillus succinogenes 130Z]
          Length = 189

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD- 58
           + ++  + CI C  T CV+ CPVD        L  + P+ C  C +C   CP D I  + 
Sbjct: 103 VAFIHEDMCIGC--TKCVQACPVDAIIGTNKTLHTVIPELCTGCELCVAPCPTDCITMEK 160

Query: 59  TEPGLELW 66
            EP +E W
Sbjct: 161 VEPKIENW 168


>gi|126732222|ref|ZP_01748023.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126707304|gb|EBA06369.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 249

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    ++   +  + ++  +CI CG+C   CP  A + D   G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASFKRTEDGIVLVNESDCIGCGLCAWACPYGARELDAAEGV 138


>gi|146296552|ref|YP_001180323.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410128|gb|ABP67132.1| ech hydrogenase subunit F [Caldicellulosiruptor saccharolyticus
          DSM 8903]
          Length = 127

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 26 FYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          F++G    L I  D+CI CG+C+ +CP +AI  D    +
Sbjct: 28 FFKGTRGSLEIEIDKCIFCGICQRKCPANAITVDRNAKM 66


>gi|328474734|gb|EGF45539.1| nitrite reductase Fe-S protein NrfC [Vibrio parahaemolyticus 10329]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           E+C  C +  CV VCP    Y  E    + +H + C+ CG C   CP
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCLAACP 141


>gi|302344645|ref|YP_003809174.1| nitroreductase [Desulfarculus baarsii DSM 2075]
 gi|301641258|gb|ADK86580.1| nitroreductase [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTE 60
          T +  + CI C    CV  CP   F        +    CI CG C   CP  A+  P   
Sbjct: 7  TVIDAQKCIGCGR--CVVTCPAQAFTLAAGKSVVSGQRCILCGHCLAVCPTGAVGVPAMG 64

Query: 61 PG 62
          PG
Sbjct: 65 PG 66


>gi|296123295|ref|YP_003631073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015635|gb|ADG68874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 594

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C+  CPV+  YE + F  I     D+C  C  C   CP +  K     
Sbjct: 136 VTAACHHCLEPACMTACPVNA-YEKDAFTGIVRHLDDQCFGCQYCTLACPYNVPKYHAAK 194

Query: 62  GL 63
           G+
Sbjct: 195 GI 196


>gi|197117614|ref|YP_002138041.1| iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086974|gb|ACH38245.1| iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
          Length = 432

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 31  NFL-AIHPDECIDCGVCEPECPVDAIKPDTEP---GLELWLKINSE 72
           NF+ A  P  C  CG C   CPVDAI    EP   G+    ++NSE
Sbjct: 282 NFIQATDPARCDGCGRCVAICPVDAISLVREPEGSGMPAKARLNSE 327


>gi|145298716|ref|YP_001141557.1| NADH dehydrogenase subunit I [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|156632701|sp|A4SLN7|NUOI_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|142851488|gb|ABO89809.1| NADH dehydrogenase I, I subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 180

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAERDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|89893643|ref|YP_517130.1| hypothetical protein DSY0897 [Desulfitobacterium hafniense Y51]
 gi|89333091|dbj|BAE82686.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 378

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+  CP D  +   N + +H + C  CG+C  +CP    +
Sbjct: 27 SHCLGHCPSDAIHSYNNHIYLHKESCSGCGLCLSDCPTGVFR 68


>gi|327479772|gb|AEA83082.1| electron transport complex protein RnfC [Pseudomonas stutzeri DSM
           4166]
          Length = 827

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI----------HPDECIDCGVCEPECP 51
           CI C   +C E CPV    +  +F A+          H  +CI+CG C   CP
Sbjct: 371 CIRCG--ECAEACPVSLLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP 421


>gi|315186755|gb|EFU20513.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          thermophila DSM 6578]
          Length = 706

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
          C+ C    C+ VCPV    +G    + + P+ CI CG C   C   A  +  D E  LE
Sbjct: 15 CVSCHR--CIAVCPVKYANDGSGEVVEVRPELCIGCGECLKACTHGARRVVDDLEEALE 71


>gi|322418560|ref|YP_004197783.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Geobacter sp. M18]
 gi|320124947|gb|ADW12507.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M18]
          Length = 97

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 17 CVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C EVCP   F  E +  +    D C++CG C   CP  A+K D   G
Sbjct: 26 CTEVCPHQVFRIEQKKAVLADRDACMECGACALNCPAAALKVDAGVG 72


>gi|291287233|ref|YP_003504049.1| hypothetical protein Dacet_1321 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884393|gb|ADD68093.1| protein of unknown function DUF362 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 360

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ E CILC    C++ CPVD      +F  +   +CI+C  C   C  DA+      GL
Sbjct: 297 VLNEKCILC--MLCMKSCPVDAIAVINDFPFVDKKKCIECFCCHEVCESDAV------GL 348

Query: 64  EL-WL 67
           E  WL
Sbjct: 349 ERSWL 353


>gi|168212642|ref|ZP_02638267.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens CPE str. F4969]
 gi|170715827|gb|EDT28009.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens CPE str. F4969]
          Length = 273

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDA 54
           + +V+ +N   CK+     +CPV  F +  ++ +I     H D+CI CG C   CP++ 
Sbjct: 189 LAFVLKDNRAFCKY-----ICPVTVFLKPMSYYSIIRVHCHEDKCIKCGKCLKVCPMNV 242


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIK 56
           + Y +++ C+ C    C+  CPV+C   GE  +    D+  CI CGVC   C   A++
Sbjct: 558 IRYEISDRCVGCGL--CLHRCPVNCI-SGERKMRHRIDQSRCIKCGVCFQTCKFHAVE 612


>gi|113867422|ref|YP_725911.1| benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
 gi|113526198|emb|CAJ92543.1| Benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
          Length = 416

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     +    +  D C  C  C   CP  AI
Sbjct: 15 EICIRC--NTCEDTCPIDAITHDDRNYVVRADVCNGCNACLSPCPTGAI 61



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHD 35


>gi|77456976|ref|YP_346481.1| FAD linked oxidase-like [Pseudomonas fluorescens Pf0-1]
 gi|77380979|gb|ABA72492.1| putative FAD-binding oxidoreductase [Pseudomonas fluorescens Pf0-1]
          Length = 940

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           D+CI+CG CEP CP   +       + +W  I +
Sbjct: 538 DKCIECGFCEPVCPSKGLTLSPRQRIVIWRDIQA 571


>gi|114045797|ref|YP_736347.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113887239|gb|ABI41290.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 182

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ +C+ C +  C+  CP   +    +  + ++ D+C  CG+C   CP DA+
Sbjct: 57  LSHSCMHCGNPACLIACPAQAYTVRSDGLVVLNRDKCTGCGLCVSACPYDAV 108


>gi|284165625|ref|YP_003403904.1| methyl-viologen-reducing hydrogenase subunit delta [Haloterrigena
           turkmenica DSM 5511]
 gi|284015280|gb|ADB61231.1| methyl-viologen-reducing hydrogenase delta subunit [Haloterrigena
           turkmenica DSM 5511]
          Length = 712

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 16  DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           +CVE CP D       + +A H + C +CG C   CP  A +
Sbjct: 315 ECVEACPHDAVERSRIDEVAFHEEACQNCGACTSACPTGATR 356


>gi|182413557|ref|YP_001818623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177840771|gb|ACB75023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 551

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTEP 61
           +T  C  C    C+  CPV   YE +    I     D+CI C  C  +CP DA K +   
Sbjct: 107 ITTACHHCADPACLNGCPV-LAYEKDPLTGIVRHLDDQCIGCQYCILKCPYDAPKYNARL 165

Query: 62  GL 63
           G+
Sbjct: 166 GI 167


>gi|166032145|ref|ZP_02234974.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
 gi|166027868|gb|EDR46625.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
          Length = 249

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           DECI CG+CE +CP  AI  + + G  +W+K
Sbjct: 181 DECIGCGLCERKCPAKAI--EIQDGKPVWIK 209


>gi|78776861|ref|YP_393176.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas
          denitrificans DSM 1251]
 gi|78497401|gb|ABB43941.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas
          denitrificans DSM 1251]
          Length = 84

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M  ++ + CI C    C E CP     EG+    I PD C +C GV     C   CPVD 
Sbjct: 1  MALIINDECIACDA--CREECPTIAIEEGDPIYFIDPDRCTECVGVYDEPACISVCPVDC 58

Query: 55 IKPD---TEPGLELWLK 68
          I PD    E   EL  K
Sbjct: 59 IIPDKDNVESIAELQFK 75


>gi|91793219|ref|YP_562870.1| electron transport complex protein RnfB [Shewanella denitrificans
           OS217]
 gi|91715221|gb|ABE55147.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           denitrificans OS217]
          Length = 205

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP-D 58
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I    
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGAGKLMHTVIAADCTGCDLCVEPCPVDCIDMLP 163

Query: 59  TEPGLELW-LKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
            E  L+ W  K+N+   T    +    ++  +A    G KQ
Sbjct: 164 VETNLKNWDWKLNAIAVTVIDPVPLMTQAQDNADNTQGDKQ 204


>gi|300853894|ref|YP_003778878.1| putative 4Fe-4S ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300434009|gb|ADK13776.1| putative 4Fe-4S ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 184

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+   C  C+   C+  CPV+   E +  + I+   CI C  C   CPV A+
Sbjct: 59  VMPVQCRHCEDAPCLNACPVNAIVEKDGSIIINESACIGCQTCTIVCPVGAV 110


>gi|152995572|ref|YP_001340407.1| electron transport complex protein RnfB [Marinomonas sp. MWYL1]
 gi|150836496|gb|ABR70472.1| electron transport complex, RnfABCDGE type, B subunit [Marinomonas
           sp. MWYL1]
          Length = 198

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I    
Sbjct: 107 VAVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIADECTGCDLCVEPCPVDCIDM-V 163

Query: 60  EPGLEL----WLKINSEYATQWPNITTKKES 86
           E G+      W K     AT    I T +++
Sbjct: 164 EVGVTAKTWSWDKPQGIAATSLNIIATDRQA 194


>gi|91228909|ref|ZP_01262809.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269968667|ref|ZP_06182663.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
 gi|91187540|gb|EAS73872.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269826721|gb|EEZ81059.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
          Length = 198

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|90021997|ref|YP_527824.1| aspartate carbamoyltransferase [Saccharophagus degradans 2-40]
 gi|89951597|gb|ABD81612.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 615

 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C  C+   C++ CP   + +   + A+   PD C  CG C   CP +A + D   G
Sbjct: 109 ISMACNHCEEPVCLKGCPTRAYTKHPEYGAVIQDPDICFGCGYCTWVCPYNAPQLDPVAG 168


>gi|71083537|ref|YP_266256.1| adenylyl-sulfate reductase chain B [Candidatus Pelagibacter
          ubique HTCC1062]
 gi|71062650|gb|AAZ21653.1| adenylyl-sulfate reductase chain B [Candidatus Pelagibacter
          ubique HTCC1062]
          Length = 156

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  C H  CV++CP D  +  EN    + I P+ C +C  C   CP  AI
Sbjct: 3  TFVYMTRCDGCGH--CVDICPSDIMHIDENIRRAVNIEPNFCWECYSCVKACPNHAI 57


>gi|330892471|gb|EGH25132.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str.
           301020]
          Length = 179

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|310779014|ref|YP_003967347.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
 gi|309748337|gb|ADO82999.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 19/118 (16%)

Query: 12  CKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD---TEPGLEL 65
           CKH   CV  C V       +   I  D+CI CG C   CP +A  I  D    +  +  
Sbjct: 11  CKHCYKCVRKCEVKAIKIENDQAHIMEDKCIACGQCFAICPQNARNIMSDLDFVKNAISS 70

Query: 66  WLKINSEYATQWPNITTKKESLPSAAK-------------MDGVKQKYEKYFSPNPGG 110
              +N   A  +     + +   SA K              D V Q YEKY S    G
Sbjct: 71  GRNVNISIAPSFRGFFEESQRFVSAIKKLGFNQVEETAVGADMVSQAYEKYLSSQENG 128


>gi|308050185|ref|YP_003913751.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307632375|gb|ADN76677.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 213

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y  +  C  C H  CV+ CP    ++  +   ++I    CI C  C   CP DA + +
Sbjct: 64  FSYYTSVGCNHCSHPVCVKACPTGACHKSRSTGLVSIDRGVCIGCASCARACPYDAPQLN 123

Query: 59  TEPGLEL 65
              G  +
Sbjct: 124 QATGTMM 130


>gi|300716527|ref|YP_003741330.1| Electron transport complex protein [Erwinia billingiae Eb661]
 gi|299062363|emb|CAX59480.1| Electron transport complex protein [Erwinia billingiae Eb661]
          Length = 191

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 VAWIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 162


>gi|261211946|ref|ZP_05926232.1| electron transport complex protein RnfB [Vibrio sp. RC341]
 gi|260838554|gb|EEX65205.1| electron transport complex protein RnfB [Vibrio sp. RC341]
          Length = 195

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  +EC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKNECTGCDLCVAPCPTDCIE 160


>gi|157736568|ref|YP_001489251.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018]
 gi|315635731|ref|ZP_07890994.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22]
 gi|157698422|gb|ABV66582.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018]
 gi|315480028|gb|EFU70698.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22]
          Length = 166

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 22/104 (21%)

Query: 6   TENCILCKHTDCVEVCPVDC-FYEGENFLAIHPD-----------ECIDCGVCEPECPVD 53
           +E C+ C    C   CP +C F E E     H +           EC+ CG C   CP D
Sbjct: 73  SEKCVACFM--CATACPAECIFIEAEERFDEHNEKRPKEFKIDLLECVFCGYCVEACPCD 130

Query: 54  AIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
           AI+ DT         I S  A++  +    K++L +  +   +K
Sbjct: 131 AIRMDT--------GIFSFTASKREDFVLDKKALMANERSKDLK 166


>gi|20093521|ref|NP_613368.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
          kandleri AV19]
 gi|19886359|gb|AAM01298.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
          kandleri AV19]
          Length = 89

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E C+ C    C   CP  C    ++   I  D C  CG+CE  CPV+AI+   E G
Sbjct: 36 EKCMNCGL--CFMYCPDGCIRPSDDGYVIDYDYCKGCGICESVCPVNAIEMVLEEG 89


>gi|324017281|gb|EGB86500.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
          Length = 143

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPG 108


>gi|291532617|emb|CBL05730.1| Uncharacterized Fe-S center protein [Megamonas hypermegale ART12/1]
          Length = 375

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T+ C+ C    C  +C        +    I PD+C+ CG C   C  DAIKP      
Sbjct: 193 VDTDKCVGC--GACSRICAHGAPIITDRKCYIDPDKCLGCGRCIGACHFDAIKPTNWNAE 250

Query: 64  ELWLKINSEYA 74
           +L  +  +EYA
Sbjct: 251 DLLNRRMAEYA 261


>gi|192361907|ref|YP_001983090.1| iron-sulfur cluster-binding protein [Cellvibrio japonicus Ueda107]
 gi|190688072|gb|ACE85750.1| iron-sulfur cluster-binding protein [Cellvibrio japonicus Ueda107]
          Length = 470

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +CI C    CV+VCPVD    +G         ECIDCG+C   C     K   E GL
Sbjct: 270 DCIDCSW--CVQVCPVDIDIRDGLQ------AECIDCGLCVDACNSVMDKMGYERGL 318


>gi|154496907|ref|ZP_02035603.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
 gi|150273865|gb|EDN00978.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +VTE C  C    C EVCP D      Y G +   I  D+CI CG C   C   AI    
Sbjct: 116 MVTEGCQGCLAHPCEEVCPKDAIKLDRYNGRSH--IDQDKCIKCGRCADVCSYKAIIIQE 173

Query: 60  EP 61
            P
Sbjct: 174 RP 175


>gi|150401707|ref|YP_001325473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014410|gb|ABR56861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 173

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 10 ILCKH---TDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
          I+C+H     C EVCPVD  Y   +  + +  ++CI CG+C   CP  AI
Sbjct: 42 IVCQHCASAPCKEVCPVDAIYHLDDGTVYLDEEKCIGCGLCPMACPFGAI 91


>gi|29653641|ref|NP_819333.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|153208644|ref|ZP_01946896.1| ferredoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154706402|ref|YP_001425124.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161830643|ref|YP_001596239.1| ferredoxin [Coxiella burnetii RSA 331]
 gi|165919779|ref|ZP_02219522.1| ferredoxin [Coxiella burnetii RSA 334]
 gi|212213202|ref|YP_002304138.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212218124|ref|YP_002304911.1| ferredoxin [Coxiella burnetii CbuK_Q154]
 gi|29540903|gb|AAO89847.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|120575830|gb|EAX32454.1| ferredoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154355688|gb|ABS77150.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161762510|gb|ABX78152.1| ferredoxin [Coxiella burnetii RSA 331]
 gi|165916862|gb|EDR35466.1| ferredoxin [Coxiella burnetii RSA 334]
 gi|212011612|gb|ACJ18993.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212012386|gb|ACJ19766.1| ferredoxin [Coxiella burnetii CbuK_Q154]
          Length = 81

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          +ECI+C VCEPECP DAI        EL  +INS   T+
Sbjct: 7  EECINCDVCEPECPNDAISMG-----ELIYEINSNRCTE 40


>gi|33519937|ref|NP_878769.1| NADH dehydrogenase subunit I [Candidatus Blochmannia floridanus]
 gi|81666916|sp|Q7VRV9|NUOI_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|33504283|emb|CAD83175.1| NADH dehydrogenase I chain I [Candidatus Blochmannia floridanus]
          Length = 181

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C    + EN        F  I+   CI CG+CE  CP  AI+
Sbjct: 59  ERCVACNL--CAVSCPVGCISLKKSENSEGRWYPEFFRINFSRCIFCGMCEEACPTAAIQ 116


>gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 590

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 17  CVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           CV  CP DC   GEN     I  + C  CG C   CP
Sbjct: 543 CVYACPADCIKGGENNQPYYIEQENCSKCGACLDICP 579



 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I PD C+ CG+C   CP D IK
Sbjct: 532 IDPDRCMGCGLCVYACPADCIK 553


>gi|332799825|ref|YP_004461324.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
 gi|332697560|gb|AEE92017.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
          Length = 584

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 36/134 (26%)

Query: 6   TENCILCKH--TDCVEVCPVDCF---YEGENF-------LAIHPDECIDCGVCEPECPVD 53
           T  CILC+   + C +V  V      Y G N        +++    C++CG C   CPV 
Sbjct: 145 TSKCILCRRCVSTCHKVQGVGVISPNYRGFNTVIAPVYDMSLSEVSCVNCGQCIMACPVG 204

Query: 54  AIKP--------------------DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
           A+K                      T P + + L    E+  +   I TKK  LP+A + 
Sbjct: 205 ALKEKDDTDKVWKALADPEKYVIVQTAPAIRVSL--GEEFGGELGTIVTKK--LPAALRR 260

Query: 94  DGVKQKYEKYFSPN 107
            G  + ++  FS +
Sbjct: 261 LGFDKVFDTDFSAD 274


>gi|319949417|ref|ZP_08023479.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Dietzia
           cinnamea P4]
 gi|319436914|gb|EFV91972.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Dietzia
           cinnamea P4]
          Length = 321

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  CV+VCP       E   + +  D C  CG C   CP   I+  + P
Sbjct: 134 SDVCKHCTHAACVDVCPTGALMHTEFGTVVVQSDICNGCGYCVSACPYGVIERRSGP 190


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I PD+CI CGVC   CPV+AI  + +
Sbjct: 542 ILPDKCIGCGVCARRCPVNAISGERK 567


>gi|313205384|ref|YP_004044041.1| 4fe-4S ferredoxin iroN-sulfur binding domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444700|gb|ADQ81056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Paludibacter
           propionicigenes WB4]
          Length = 321

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            Y + + C  C +  CV VCPVD  F   +  + I  + CI C  C   CP  A
Sbjct: 139 AYYMPKPCQHCDNPPCVAVCPVDATFKRQDGIVLIDNERCIGCRFCIAACPYSA 192


>gi|296132872|ref|YP_003640119.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
          sp. JR]
 gi|296031450|gb|ADG82218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
          potens JR]
          Length = 54

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C++ CP     EG+ +     D C DCG C   CP  AI
Sbjct: 1  MAYKITDECVACGT--CLDTCPNGAIEEGDIYKI--TDACADCGACAEACPTGAI 51


>gi|77919712|ref|YP_357527.1| indolepyruvate oxidoreductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545795|gb|ABA89357.1| indolepyruvate oxidoreductase, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V   C  C++      CP   + E    + I  D C+ CGVCE  CP  AI    E
Sbjct: 556 VGAECNGCRYCIKAFECPALVYDEPSGRVCIDNDLCVGCGVCERVCPRGAIHNQGE 611


>gi|113971988|ref|YP_735781.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886672|gb|ABI40724.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ +C+ C +  C+  CP   +    +  + ++ D+C  CG+C   CP DA+
Sbjct: 57  LSHSCMHCGNPACLIACPAQAYTVRSDGLVVLNRDKCTGCGLCVSACPYDAV 108


>gi|219666551|ref|YP_002456986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536811|gb|ACL18550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 174

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           + Y ++ +C  C++ +CV VCP   + + ++ + +H P  C  CG C   CP    K   
Sbjct: 46  LHYFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFHVPKYSL 105

Query: 60  EPG 62
             G
Sbjct: 106 SSG 108


>gi|310659325|ref|YP_003937046.1| cobyrinic acid a,c-diamide synthase [Clostridium sticklandii DSM
           519]
 gi|308826103|emb|CBH22141.1| Cobyrinic acid a,c-diamide synthase [Clostridium sticklandii]
          Length = 295

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +E CI C    C+E C  D   E E+   ++P  C  C +CE  CPV+AI  + +   EL
Sbjct: 66  SEKCINCGL--CMEKCRFDAI-ENESDYKVNPFACEGCSLCEYVCPVNAIIMNKDVAGEL 122

Query: 66  WL 67
            L
Sbjct: 123 ML 124


>gi|300723256|ref|YP_003712556.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629773|emb|CBJ90381.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
          Length = 207

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 109 VAFIDEENCIGC--TKCIQACPVDAIIGANRAMHTVVEDLCTGCDLCVAPCPTDCI 162


>gi|293609051|ref|ZP_06691354.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829624|gb|EFF87986.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 87

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCD--VCEPVCPNEAIFMGEVIYEIHPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|262402645|ref|ZP_06079206.1| electron transport complex protein RnfB [Vibrio sp. RC586]
 gi|262351427|gb|EEZ00560.1| electron transport complex protein RnfB [Vibrio sp. RC586]
          Length = 195

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +  +EC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKNECTGCDLCVAPCPTDCIE 160


>gi|54309722|ref|YP_130742.1| electron transport complex protein RnfB [Photobacterium profundum
           SS9]
 gi|46914160|emb|CAG20940.1| Putative RnfB-related protein [Photobacterium profundum SS9]
          Length = 192

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G ++   +  DEC  C +C   CP D I+
Sbjct: 105 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIE 159


>gi|37679887|ref|NP_934496.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|37198632|dbj|BAC94467.1| ferredoxin [Vibrio vulnificus YJ016]
          Length = 557

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECP 51
           T  C LC    CV VCP    + +GE+  L     +C+ CG+C   CP
Sbjct: 421 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACP 466


>gi|323700004|ref|ZP_08111916.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio sp. ND132]
 gi|323459936|gb|EGB15801.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio desulfuricans ND132]
          Length = 249

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDA 54
           C+ C++  CV  CP    Y+      +  DE  CI CG C P CP DA
Sbjct: 62  CMHCENPTCVTACPTGATYKDPETGVVVIDETLCIGCGNCIPACPYDA 109


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I PD+CI CGVC   CPV+AI
Sbjct: 542 ILPDKCIGCGVCARRCPVNAI 562


>gi|229591260|ref|YP_002873379.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens SBW25]
 gi|312961693|ref|ZP_07776191.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6]
 gi|229363126|emb|CAY50146.1| NADH Dehydrogenase I chain I [Pseudomonas fluorescens SBW25]
 gi|311283952|gb|EFQ62535.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|226330215|ref|ZP_03805733.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
 gi|225201010|gb|EEG83364.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
          Length = 208

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +NCI C  T C++ CPVD        +  +  D C  C +C P CP D I
Sbjct: 115 DNCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVPPCPTDCI 162


>gi|218885987|ref|YP_002435308.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756941|gb|ACL07840.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 267

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            +E C  C    C  +CP       E+   +HP+ C+ CG+C   CP  A+ P    G  
Sbjct: 98  ASEACTRCGL--CERLCPDHAMTVEEDGPRLHPENCLSCGLCIKRCPEKAL-PVAREG-- 152

Query: 65  LWLKINSEYATQWPNITTKKESL---PSAAKMDG 95
            W  +      + P + T+ + L   P A+   G
Sbjct: 153 -WRVVVGGRLGRRPRLATELDGLDEVPGASGFPG 185


>gi|254172099|ref|ZP_04878775.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
 gi|214033995|gb|EEB74821.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
          Length = 174

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           Y V  NC  C+   C+EVCP    ++ E+  + +  D+CI C +C   CP
Sbjct: 30 AYNVPMNCRHCEKAPCMEVCPTGAIFKDEDGAVLVDVDKCIGCKMCAIVCP 80


>gi|150399563|ref|YP_001323330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012266|gb|ABR54718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 166

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C+H   + C EVCPV      +  + +  + CI CG+C   CP  AI
Sbjct: 42 VVCQHCTSSPCSEVCPVSAIESKDGVIYLDKETCIGCGLCAMACPFGAI 90


>gi|89893636|ref|YP_517123.1| hypothetical protein DSY0890 [Desulfitobacterium hafniense Y51]
 gi|89333084|dbj|BAE82679.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 379

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + + C H  C+  CP D  +   N + ++ D C  CG+C  +CP +  
Sbjct: 19 VLHHGVECNH--CIGHCPADAIHYDNNHIYLNKDSCNGCGLCLSDCPTEVF 67


>gi|283778897|ref|YP_003369652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283437350|gb|ADB15792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 718

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 17/58 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD------ECIDCGVCEPECPVDAIK 56
           V  +CI C    CV++CP D         AI PD      +C  C  C   CP +AIK
Sbjct: 386 VESSCIHC--NKCVQICPFD---------AIKPDFTTRTTDCTLCQTCAGVCPTEAIK 432


>gi|163751853|ref|ZP_02159068.1| NADH dehydrogenase subunit I [Shewanella benthica KT99]
 gi|161328269|gb|EDP99431.1| NADH dehydrogenase subunit I [Shewanella benthica KT99]
          Length = 171

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 16/67 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF-----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C   CPVDC            +E + F  I+   CI CG CE  CP  AI
Sbjct: 49  ERCVACNL--CSVACPVDCISVEKTEKPDGRWEAKTF-TINFSRCIMCGFCEEACPTHAI 105

Query: 56  K--PDTE 60
           +  PD E
Sbjct: 106 QLTPDFE 112


>gi|28870536|ref|NP_793155.1| NADH dehydrogenase I subunit I [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970028|ref|ZP_03398160.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381383|ref|ZP_07229801.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062154|ref|ZP_07253695.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato K40]
 gi|302130464|ref|ZP_07256454.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|81730550|sp|Q87ZQ2|NUOI_PSESM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|28853784|gb|AAO56850.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925132|gb|EEB58695.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875766|gb|EGH09915.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965585|gb|EGH65845.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017278|gb|EGH97334.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|66046433|ref|YP_236274.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           B728a]
 gi|81308095|sp|Q4ZRI6|NUOI_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|63257140|gb|AAY38236.1| NADH-quinone oxidoreductase, chain I [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972914|gb|EGH72980.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|77459832|ref|YP_349339.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1]
 gi|110287767|sp|Q3KA56|NUOI_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77383835|gb|ABA75348.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|37679436|ref|NP_934045.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           vulnificus YJ016]
 gi|37198180|dbj|BAC94016.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           vulnificus YJ016]
          Length = 265

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 134 KSCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACP 180


>gi|237800535|ref|ZP_04588996.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023395|gb|EGI03452.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|197285542|ref|YP_002151414.1| tetrathionate reductase subunit B [Proteus mirabilis HI4320]
 gi|227356037|ref|ZP_03840428.1| tetrathionate reductase subunit B [Proteus mirabilis ATCC 29906]
 gi|194683029|emb|CAR43509.1| tetrathionate reductase subunit B [Proteus mirabilis HI4320]
 gi|227163814|gb|EEI48722.1| tetrathionate reductase subunit B [Proteus mirabilis ATCC 29906]
          Length = 246

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + I  + C+ C  C   CP DA
Sbjct: 99  LCNHCDEPPCVPVCPVQATFQRKDGIVVIDNERCVGCAYCVQACPYDA 146


>gi|168188071|ref|ZP_02622706.1| anaerobic sulfite reductase subunit C [Clostridium botulinum C str.
           Eklund]
 gi|169294091|gb|EDS76224.1| anaerobic sulfite reductase subunit C [Clostridium botulinum C str.
           Eklund]
          Length = 304

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C     +E C +   Y+ E+ + I  ++CI+CG C   C  +A++ + E G++++
Sbjct: 170 DKCRNCGKCGVIEKCRMKAAYKEEDKVVIDREKCINCGKCIENCYFNAMETN-EEGMKIY 228

Query: 67  L 67
           L
Sbjct: 229 L 229


>gi|158320134|ref|YP_001512641.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158140333|gb|ABW18645.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 364

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +C+E CP     + +    I  + CI CG+C+ +CP  +I
Sbjct: 35 NCIESCPTAAIVKRDQAFVIEDELCIGCGICKVKCPSQSI 74


>gi|89900968|ref|YP_523439.1| putative glutamate synthase (NADPH) small subunit [Rhodoferax
           ferrireducens T118]
 gi|89345705|gb|ABD69908.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rhodoferax ferrireducens
           T118]
          Length = 541

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC  C   +C  VCP +   +   G+ F   + D C  CG+C  ECP  AIK
Sbjct: 487 NCFECD--NCYGVCPDNAVIKHGPGKGF-DFNYDYCKGCGICVSECPCGAIK 535


>gi|330810470|ref|YP_004354932.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|75527983|sp|Q8RQ74|NUOI_PSEFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|19483810|gb|AAL89571.1| NADH dehydrogenase I subunit I [Pseudomonas fluorescens]
 gi|327378578|gb|AEA69928.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|27365883|ref|NP_761411.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
 gi|27362032|gb|AAO10938.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
          Length = 552

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECP 51
           T  C LC    CV VCP    + +GE+  L     +C+ CG+C   CP
Sbjct: 416 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACP 461


>gi|328474564|gb|EGF45369.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           10329]
          Length = 198

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|297624163|ref|YP_003705597.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Truepera radiovictrix DSM 17093]
 gi|297165343|gb|ADI15054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera
           radiovictrix DSM 17093]
          Length = 332

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V + CI+C    C  VCP   F          G   L + P+ C  C  C   CPV  I 
Sbjct: 243 VHDGCIMCPV--CTNVCPTGAFKRELSPVQMGGGGVLKLEPERCNGCNACVTSCPVRVIT 300

Query: 57  PDTE 60
            D E
Sbjct: 301 LDGE 304


>gi|149184627|ref|ZP_01862945.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
 gi|148831947|gb|EDL50380.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
          Length = 161

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDA+ 
Sbjct: 60  ERCIACKL--CEAVCPAQAITIESEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAVV 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        N EYAT+     T++E L   AK+     K+E+  + N
Sbjct: 118 EGP----------NFEYATE-----TREELLYDKAKLLANGDKWERAIAAN 153


>gi|71733335|ref|YP_275286.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257485447|ref|ZP_05639488.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625433|ref|ZP_06458387.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649284|ref|ZP_06480627.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679207|ref|ZP_06500097.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487555|ref|ZP_07005597.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185030|ref|ZP_07261703.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           642]
 gi|110287765|sp|Q48H47|NUOI_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71553888|gb|AAZ33099.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157939|gb|EFH99017.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323795|gb|EFW79879.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327934|gb|EFW83939.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866831|gb|EGH01540.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330881176|gb|EGH15325.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330900634|gb|EGH32053.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330954556|gb|EGH54816.1| NADH dehydrogenase subunit I [Pseudomonas syringae Cit 7]
 gi|330981363|gb|EGH79466.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aptata str.
           DSM 50252]
 gi|330987949|gb|EGH86052.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010720|gb|EGH90776.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|320156338|ref|YP_004188717.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
 gi|319931650|gb|ADV86514.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECP 51
           T  C LC    CV VCP    + +GE+  L     +C+ CG+C   CP
Sbjct: 416 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACP 461


>gi|296163947|ref|ZP_06846582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900702|gb|EFG80073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 95

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 3  YVVTENCILCKHTDCVEVCP--VDCFYE-GENFLA---IHPDECIDCGVCEPECPVDAI 55
          + + + CI C    C   CP  VD   +  ++FL    I  DECIDCG C P CPVD I
Sbjct: 9  FYIDDTCIGCGA--CEHSCPGRVDAISKKADDFLGRFVIDLDECIDCGKCVPLCPVDCI 65


>gi|284162822|ref|YP_003401445.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012819|gb|ADB58772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 249

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+H  CV+VC     Y+ E+  + +    CI C  C   CP +A +   EP  E   
Sbjct: 105 CQECEHPGCVQVCLTQASYKREDGIVVVDLHRCIGCRYCMIACPYNARRFLFEPPEEHLT 164

Query: 68  KINSEYATQWPNITTK 83
            +N E   +   +  K
Sbjct: 165 VVNPEAPMRKHGVVMK 180


>gi|170765779|ref|ZP_02900590.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170124925|gb|EDS93856.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 247

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+Y+   +C  CK   C+  CP D   +Y+G+   +I   +C  CG CE  CP  AI P 
Sbjct: 1  MSYIDQTSCTGCKV--CLLFCPDDAIEYYDGK--CSIDSKQCTLCGCCEGCCPFSAIHPT 56

Query: 59 T 59
          T
Sbjct: 57 T 57


>gi|262393721|ref|YP_003285575.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
 gi|262337315|gb|ACY51110.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
          Length = 198

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|85859306|ref|YP_461508.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722397|gb|ABC77340.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 346

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
           ++ E C  C    CVEVCP      G++ L  +  E CI C  C   CP  A+K
Sbjct: 194 LMPEKCTKCG--TCVEVCPTGAAQFGDDGLPFYDHEVCIGCAQCIGFCPALALK 245


>gi|45359027|ref|NP_988584.1| hypothetical protein MMP1464 [Methanococcus maripaludis S2]
 gi|45047902|emb|CAF31020.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 161

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C++C    C + CP +   E ++ ++ + D+C+ CG CE  CP  AIK
Sbjct: 114 CVMC--LVCTKNCPFEAISESDDTISFNMDKCVLCGHCEEICPAKAIK 159



 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 8/53 (15%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIK 56
          E CILC    C+EVCPV       NF  + PD   +C+ C  C   CPVDAIK
Sbjct: 36 EICILCNR--CLEVCPVTAI--SSNFPEV-PDIDNKCVYCNTCVETCPVDAIK 83


>gi|257388652|ref|YP_003178425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257170959|gb|ACV48718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 109

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--------EGE-NFLAIHPDECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F         E E      H D+CIDC +C   CPV
Sbjct: 37  THVAVDFDICIADGACLEDCPVDVFEWVDTPDHPESEIKADPAHEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPG 62
           DAI  D +PG
Sbjct: 97  DAI--DVDPG 104


>gi|156975002|ref|YP_001445909.1| hypothetical protein VIBHAR_02724 [Vibrio harveyi ATCC BAA-1116]
 gi|156526596|gb|ABU71682.1| hypothetical protein VIBHAR_02724 [Vibrio harveyi ATCC BAA-1116]
          Length = 165

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
          E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP
Sbjct: 32 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACP 78


>gi|161527803|ref|YP_001581629.1| ATPase RIL [Nitrosopumilus maritimus SCM1]
 gi|160339104|gb|ABX12191.1| ABC transporter related [Nitrosopumilus maritimus SCM1]
          Length = 595

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%)

Query: 16 DCVEVCPV-----DCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
          +C++ CPV     DC    E       DE  C  CG+C   CP DAI
Sbjct: 21 ECIKYCPVNKSGADCIVLNEESKKAQIDEDICNGCGICVKVCPFDAI 67


>gi|9651774|gb|AAF91266.1|AF230199_8 pyruvate oxidoreductase cysteine-rich subunit 1 [Methanococcus
          maripaludis]
          Length = 167

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 10 ILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C+H   + C++VCPV      +  + +  + CI CG+C   CP  AI
Sbjct: 42 VVCQHCTSSPCMDVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAI 90


>gi|331002204|ref|ZP_08325723.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411298|gb|EGG90714.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 393

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+ VV E +C  C  T CV+ CP D     EN  A+    C  CG C   CP DAI  D
Sbjct: 1  MSVVVIEKDCRGC--TKCVKSCPFDAITM-ENKKAVIGIACTSCGTCIEVCPFDAIVKD 56


>gi|325959022|ref|YP_004290488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330454|gb|ADZ09516.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 460

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---EPG 62
           +  C  C+   C+  CPVD  ++ E+      D+C+ C +C   CP +AI   T   EP 
Sbjct: 27  SSKCEACEDKPCLMSCPVDAIWKTEDGKIEIDDKCVGCVLCREACPYNAINMKTTLSEPI 86

Query: 63  LELWLKINSEYATQ 76
            E    IN++   Q
Sbjct: 87  RENVPNINTKLCRQ 100



 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CV  CP +     ++ + +  ++CI CG C+  CPV+AIK  TE
Sbjct: 407 CVRKCPTNALKLEKDEVIVDTEKCILCGECDIICPVNAIKLKTE 450


>gi|291544150|emb|CBL17259.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. 18P13]
          Length = 475

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10  ILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           I C+   C   C +   +  EN   AI  D+CI CG C  +CP  AI
Sbjct: 144 INCRRRPCENACKIKALHMNENKAAAIDNDKCISCGACVYQCPFGAI 190


>gi|291460676|ref|ZP_06600066.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416635|gb|EFE90354.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 296

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C + CP D  +  +N LA+  ++C DCG+C  +CP  AI
Sbjct: 221 GCIACGL--CEKNCPFDAIHVTDN-LAVMNEKCTDCGICAQKCPTGAI 265


>gi|257055934|ref|YP_003133766.1| formate dehydrogenase beta subunit [Saccharomonospora viridis DSM
           43017]
 gi|256585806|gb|ACU96939.1| formate dehydrogenase beta subunit [Saccharomonospora viridis DSM
           43017]
          Length = 337

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 156 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSACPYGVI 208


>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
           kamchatkensis 1221n]
          Length = 280

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIK 56
           +E C   + + CV  CP + F  G N + +  D   EC  C +CE  CP  A+K
Sbjct: 178 SEKCKGAECSRCVNACPKNIFEAGNNSVRVKEDKILECTFCRLCENICPTQAVK 231


>gi|134045160|ref|YP_001096646.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132662785|gb|ABO34431.1| membrane-bound hydrogenase subunit ehaQ [Methanococcus
          maripaludis C5]
          Length = 161

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CILC    C+EVCPV       + +    D+C+ C  C   CPV+AI
Sbjct: 36 ETCILCNR--CLEVCPVTAISSNFSEIPNINDKCVYCNTCVETCPVNAI 82


>gi|83644719|ref|YP_433154.1| electron transport complex protein RnfB [Hahella chejuensis KCTC
           2396]
 gi|123767479|sp|Q2SKU5|RNFB_HAHCH RecName: Full=Electron transport complex protein rnfB
 gi|83632762|gb|ABC28729.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Hahella
           chejuensis KCTC 2396]
          Length = 197

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I    
Sbjct: 107 VAYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCIDMIP 164

Query: 60  EP-GLELW 66
            P G+  W
Sbjct: 165 APSGIRDW 172


>gi|84393094|ref|ZP_00991859.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio splendidus
           12B01]
 gi|84376251|gb|EAP93134.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio splendidus
           12B01]
          Length = 228

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           Y  T N C  C +  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 92  YRFTRNSCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACP 143


>gi|291288473|ref|YP_003505289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885633|gb|ADD69333.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 221

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           + + V + C  C    C+  CP    ++ EN  +A++ D CI CG C   CP  A
Sbjct: 51  VRHFVPKLCNNCDDAPCIAACPTGATFKMENGIVAVNRDTCIGCGRCAEMCPYGA 105


>gi|218885706|ref|YP_002435027.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756660|gb|ACL07559.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 108

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 10/53 (18%)

Query: 17 CVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECP--VDAIKPDTEPG 62
          CV  CP     ++ F + E     H DECI+CG CE  CP    AIKP T  G
Sbjct: 24 CVAFCPAKVLVLNAFGKAE---VAHEDECINCGFCELHCPDFAIAIKPRTRNG 73


>gi|82703846|ref|YP_413412.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosospira multiformis
          ATCC 25196]
 gi|82411911|gb|ABB76020.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosospira
          multiformis ATCC 25196]
          Length = 86

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VC+PECP  AI P  E     + +IN +  T+
Sbjct: 7  DECINCDVCQPECPNSAISPGEE-----YYEINPDLCTE 40


>gi|330958152|gb|EGH58412.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 174

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|325143283|gb|EGC65621.1| ferredoxin [Neisseria meningitidis 961-5945]
          Length = 63

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|297526779|ref|YP_003668803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Staphylothermus hellenicus DSM 12710]
 gi|297255695|gb|ADI31904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Staphylothermus hellenicus DSM 12710]
          Length = 161

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 17 CVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
          C  +CP +     +  +   I+PD+CI CGVC P+CP  AI
Sbjct: 45 CANICPFNAIEMEKIYDLPRINPDKCIGCGVCVPQCPGLAI 85


>gi|258513853|ref|YP_003190075.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257777558|gb|ACV61452.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 55

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  E CI C    C +VCPV    + E+  A+  DEC++CG C  ECP +AI
Sbjct: 3  ALVNKEKCIGCGQ--CEDVCPVG-AIKLEDGKAVISDECVECGTCVEECPNEAI 53


>gi|260589999|ref|ZP_05855912.1| ferredoxin [Blautia hansenii DSM 20583]
 gi|331084315|ref|ZP_08333420.1| hypothetical protein HMPREF0992_02344 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|260539806|gb|EEX20375.1| ferredoxin [Blautia hansenii DSM 20583]
 gi|330401850|gb|EGG81427.1| hypothetical protein HMPREF0992_02344 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 67

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           +V T++C+ C    C++VCP +     +  +A +   +C+ CG CE ECP   IK
Sbjct: 8  AFVNTDDCVACGC--CIKVCPRNAIEIWKGIMAKVDIAKCVGCGKCEKECPASVIK 61


>gi|254173144|ref|ZP_04879817.1| oxidoreductase iron-sulfur protein [Thermococcus sp. AM4]
 gi|214032553|gb|EEB73382.1| oxidoreductase iron-sulfur protein [Thermococcus sp. AM4]
          Length = 165

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + V  NC  C+   C+ VCP    +  E+  +A  P +CI C +C   CP    K D E
Sbjct: 40 FTVPFNCRHCEKAPCLNVCPTGALFRDEDGAVAFDPLKCIGCLMCAVACPFGIPKLDEE 98


>gi|187733724|ref|YP_001880344.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shigella
          boydii CDC 3083-94]
 gi|187430716|gb|ACD09990.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shigella
          boydii CDC 3083-94]
          Length = 148

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 2  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 61

Query: 60 EPG 62
          E G
Sbjct: 62 EKG 64


>gi|153837801|ref|ZP_01990468.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ3810]
 gi|149748822|gb|EDM59661.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ3810]
          Length = 255

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|150401779|ref|YP_001325545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014482|gb|ABR56933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 502

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 15/68 (22%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID-----CGVCEPECPVDAIKP 57
           Y   E+C+LC    CV++CP        N + I+ + CID     CG+C  ECP DAI+ 
Sbjct: 306 YYNPEDCLLCNV--CVKICP--------NEVRINKETCIDGGCVLCGICVKECPEDAIEI 355

Query: 58  DTEPGLEL 65
              P  E+
Sbjct: 356 KELPKFEV 363


>gi|197116572|ref|YP_002136999.1| NADH dehydrogenase subunit I [Geobacter bemidjiensis Bem]
 gi|197085932|gb|ACH37203.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem]
          Length = 176

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGEN      +  I+   CI CG+C   CP  AI
Sbjct: 54  AERCVACYL--CSGACPVDCISMAAAEGENGRRYAAWFRINFSRCILCGMCAEACPTLAI 111

Query: 56  KPDTE 60
           +   E
Sbjct: 112 QMSPE 116


>gi|70731263|ref|YP_261004.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf-5]
 gi|110287766|sp|Q4K9S9|NUOI_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|68345562|gb|AAY93168.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|116051508|ref|YP_789656.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586729|gb|ABJ12744.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 774

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECP 51
           CI C   DC  VCPV        F+    E E  LA +  +CI+CG C   CP
Sbjct: 369 CIRCG--DCARVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|325958247|ref|YP_004289713.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanobacterium sp. AL-21]
 gi|325329679|gb|ADZ08741.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanobacterium sp. AL-21]
          Length = 80

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E CI C++  CV  CP  C    +    I  D C  CG+C  ECPV AIK + E
Sbjct: 32 ETCIDCEN--CVMFCPEGCI---DKNYDIDYDYCKGCGICAEECPVKAIKMERE 80


>gi|309785015|ref|ZP_07679648.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 1617]
 gi|308927385|gb|EFP72859.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 1617]
          Length = 162

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 40  ERCVACNL--CAVACPVGCISLQKTETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 97

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 98  LTPDFEMG 105


>gi|303256812|ref|ZP_07342826.1| molybdopterin oxidoreductase [Burkholderiales bacterium 1_1_47]
 gi|302860303|gb|EFL83380.1| molybdopterin oxidoreductase [Burkholderiales bacterium 1_1_47]
          Length = 253

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECP 51
           C  C++  CV+VCP    +     + +H DE CI C +C+  CP
Sbjct: 62  CNHCENPQCVKVCPTGAMFISPEGVVLHNDEACIGCRLCQNACP 105


>gi|294495379|ref|YP_003541872.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
 gi|292666378|gb|ADE36227.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
          Length = 286

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 18  VEVCPVDCFYEGENFLAIHP--------DECIDCGVCEPECPVDAIKPDTE 60
           V  CP  C    EN   I          D+C  CG+CE  CPVDAIK + +
Sbjct: 139 VTGCPSSCMKPQENDFGIMGGLEPEWIDDKCTRCGLCETTCPVDAIKIEND 189


>gi|288559810|ref|YP_003423296.1| pyruvate ferredoxin oxidoreductase-associated PorF
           [Methanobrevibacter ruminantium M1]
 gi|288542520|gb|ADC46404.1| pyruvate ferredoxin oxidoreductase-associated PorF
           [Methanobrevibacter ruminantium M1]
          Length = 142

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           C+ VCP          + I  D+CI CG+C   CP+ A+  + E G      + ++Y TQ
Sbjct: 46  CLAVCPKGAIVALGGAITIKQDKCIGCGLCHSVCPIGAVTIN-EIGQATKCDLCADYDTQ 104

Query: 77  W 77
            
Sbjct: 105 Q 105


>gi|257063420|ref|YP_003143092.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256791073|gb|ACV21743.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 210

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C  C + +CV VCP    ++ +   + ++ + C+ CG C   CP  A  P  +P
Sbjct: 59  YHISLACNHCANPECVHVCPTGAMHKNDLGLVVVNNERCVGCGYCTIACPYHA--PSIDP 116

Query: 62  GLE 64
            L 
Sbjct: 117 ILR 119


>gi|209761898|gb|ACI79261.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|320645910|gb|EFX14891.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651210|gb|EFX19645.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H- str. H 2687]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|188585285|ref|YP_001916830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349972|gb|ACB84242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 374

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 37  PDECIDCGVCEPECPVDAIK 56
           P +C DCG+C+  CPVDAIK
Sbjct: 298 PWKCFDCGICKLACPVDAIK 317


>gi|28898786|ref|NP_798391.1| tetrathionate reductase subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364141|ref|ZP_05776847.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus K5030]
 gi|260877224|ref|ZP_05889579.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           AN-5034]
 gi|260897830|ref|ZP_05906326.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           Peru-466]
 gi|28807005|dbj|BAC60275.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087620|gb|EFO37315.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           Peru-466]
 gi|308090343|gb|EFO40038.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           AN-5034]
 gi|308115222|gb|EFO52762.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus K5030]
          Length = 255

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|28898877|ref|NP_798482.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260362455|ref|ZP_05775396.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
 gi|260879450|ref|ZP_05891805.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|260897153|ref|ZP_05905649.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|260902710|ref|ZP_05911105.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|33301642|sp|Q87MX3|RNFB_VIBPA RecName: Full=Electron transport complex protein rnfB
 gi|28807096|dbj|BAC60366.1| RnfB-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087155|gb|EFO36850.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|308093524|gb|EFO43219.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109013|gb|EFO46553.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113332|gb|EFO50872.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
          Length = 198

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|226944925|ref|YP_002799998.1| NADH dehydrogenase subunit I [Azotobacter vinelandii DJ]
 gi|226719852|gb|ACO79023.1| NADH-quinone oxidoreductase, chain I [Azotobacter vinelandii DJ]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|301064419|ref|ZP_07204844.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441501|gb|EFK05841.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 369

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C   DCV  C        E    I+ ++C+ CG C   CP +AI       +
Sbjct: 191 VKRKKCVGCG--DCVRHCAGSAISLKEKKAFINTEKCVGCGECILICPNEAIDVRWSRDI 248

Query: 64  ELWLKINSEYA 74
            L+ K  +EYA
Sbjct: 249 PLFQKKMAEYA 259


>gi|254672827|emb|CBA06992.1| Ferredoxin [Neisseria meningitidis alpha275]
          Length = 61

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +IN    TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EINPNLCTQ 40


>gi|197121507|ref|YP_002133458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|220916274|ref|YP_002491578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171356|gb|ACG72329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|219954128|gb|ACL64512.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 100

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 20/111 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M   +TE CI C    C   CP     +G++   I+PD C +C        C   CPVD 
Sbjct: 1   MATFITEECINCGA--CEPECPNSAISQGDDIYVINPDLCTECVGFHGEEACAAVCPVDC 58

Query: 55  IKPD---TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
             PD   TE   + + K+    AT  P+ T      PS A++     ++ K
Sbjct: 59  CVPDPNRTETEEQNYGKL----ATIHPDKT-----FPSLAELTAELSRFRK 100


>gi|55377023|ref|YP_134873.1| ferredoxin [Haloarcula marismortui ATCC 43049]
 gi|55229748|gb|AAV45167.1| ferredoxin [Haloarcula marismortui ATCC 43049]
          Length = 109

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--------EGE-NFLAIHPDECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F         E E      H D+CIDC +C   CPV
Sbjct: 37  THVAVDFDICIADGACLEDCPVDVFEWVDTPDHPESEIKADPAHEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPG 62
           DAI  D +PG
Sbjct: 97  DAI--DVDPG 104


>gi|329889339|ref|ZP_08267682.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
 gi|328844640|gb|EGF94204.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI 
Sbjct: 50  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAIV 107

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        NSE+AT+     T++E L   A++     ++E+  + N
Sbjct: 108 EGP----------NSEFATE-----TREELLYDKARLLDNGDRWERLIAKN 143


>gi|328474655|gb|EGF45460.1| tetrathionate reductase subunit B [Vibrio parahaemolyticus 10329]
          Length = 255

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|311694181|gb|ADP97054.1| electron transport complex, RnfABCDGE type, B subunit [marine
           bacterium HP15]
          Length = 140

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           +  +  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I   T
Sbjct: 56  VAVIREDECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVDPCPVDCIDMVT 113

Query: 60  -EPGLELW 66
            EP +  W
Sbjct: 114 VEPDIRTW 121


>gi|207859432|ref|YP_002246083.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206711235|emb|CAR35611.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 223

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKP--DTE 60
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P   T 
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTA 149

Query: 61  PGLELWLKINSEYATQ 76
              +   KIN +   Q
Sbjct: 150 DKCDFCRKINLKAGKQ 165


>gi|150390052|ref|YP_001320101.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949914|gb|ABR48442.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 328

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C + CPVD   EGE      I  D+CI CGVCE +CP DAI
Sbjct: 279 CIGC--TICKKNCPVDAI-EGELKENHKIIEDKCIGCGVCEQKCPKDAI 324



 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 17  CVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CVE CP        E      IH D CI C +C+  CPVDAI+ + +
Sbjct: 253 CVEKCPTKAIEGQLEKRKKALIHEDLCIGCTICKKNCPVDAIEGELK 299


>gi|149921106|ref|ZP_01909564.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
 gi|149817993|gb|EDM77452.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
          Length = 820

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK---- 56
           ++  +C  CK+  C+  CP        EGE F  I  + C  CG C   CP + I+    
Sbjct: 362 LLPNSCQHCKNPSCMLDCPTGAVGRDPEGEVF--IREELCTGCGACAKACPWENIRMAPR 419

Query: 57  -PDT------EPGLELWLKINSEYATQWPNITTKKES 86
            P +      EP  E   +   +    +P + TK +S
Sbjct: 420 GPSSAQQRWGEPLREAAERKGMDLLAMFPEVATKCDS 456


>gi|78223444|ref|YP_385191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78194699|gb|ABB32466.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 371

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CPV         L I  ++CI CG+C   CP  AI
Sbjct: 299 CIACGL--CAKRCPVRGVTSIMGPLHISEEKCIGCGLCVTTCPTQAI 343


>gi|317493927|ref|ZP_07952344.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918254|gb|EFV39596.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 204

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 30/70 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      + + ++   C+ C +C   CP  AI  +    L +   
Sbjct: 51  CHQCEDAPCAQVCPVNAITHTNDSIQLNESLCVSCKLCGIACPFGAITMNGSKPLHIPAN 110

Query: 69  INSEYATQWP 78
            N+  A   P
Sbjct: 111 SNTPMALPAP 120


>gi|260901541|ref|ZP_05909936.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ4037]
 gi|308110900|gb|EFO48440.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ4037]
          Length = 255

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|258620204|ref|ZP_05715243.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM573]
 gi|258587562|gb|EEW12272.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM573]
          Length = 244

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y  E    + +H + C+ CG C   CP
Sbjct: 113 KSCQHCENPPCVYVCPTGATYKDEATGIVDVHKERCVGCGYCIAACP 159


>gi|228470926|ref|ZP_04055771.1| f420H2:quinone oxidoreductase [Porphyromonas uenonis 60-3]
 gi|228307323|gb|EEK16337.1| f420H2:quinone oxidoreductase [Porphyromonas uenonis 60-3]
          Length = 394

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 12 CKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C    C +VCP +C       EG  +  +  + CI+C  CE  CP   +    EP
Sbjct: 11 CGCEACRQVCPKECIRLERDEEGFGYPVVDLERCIECHKCERVCPFMQLGAPREP 65


>gi|223982716|ref|ZP_03632946.1| hypothetical protein HOLDEFILI_00220 [Holdemania filiformis DSM
           12042]
 gi|223965312|gb|EEF69594.1| hypothetical protein HOLDEFILI_00220 [Holdemania filiformis DSM
           12042]
          Length = 201

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y +T  C  C    C+ VCP  C         I  + C+ CG C+  CP  A+
Sbjct: 145 MRYGITAKCDGC--GVCLSVCPQQCIELTGKQAHIRQEHCLHCGQCQQHCPKQAV 197


>gi|242281199|ref|YP_002993328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124093|gb|ACS81789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 428

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 10/52 (19%)

Query: 17  CVEVCPVDCF-YEGEN---------FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C   CP+D      EN         F  I+ + C+ CGVC  +CP  A++ D
Sbjct: 300 CARACPIDAITMHKENVPGAEKPRRFAEINKNICLGCGVCALKCPTGALQMD 351


>gi|209920159|ref|YP_002294243.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           SE11]
 gi|209913418|dbj|BAG78492.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|324017033|gb|EGB86252.1| hydrogenase 4 subunit H [Escherichia coli MS 117-3]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|195953852|ref|YP_002122142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933464|gb|ACG58164.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 165

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK--P 57
           ++Y +  NC  C    CV  CP     + ++ L    D  CI C  C   CP  AI   P
Sbjct: 45  ISYFMPMNCFHCDVAPCVYACPTSAMTKRDDGLVFVRDNLCIGCKACIIACPYGAISFNP 104

Query: 58  DTEPGLELWLKINSEYATQWPNITTK 83
           +TE  ++    IN       P+  TK
Sbjct: 105 ETEKVVKCDFCINRLEKGLLPSCVTK 130


>gi|126460205|ref|YP_001056483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249926|gb|ABO09017.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 215

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V + C  C++  CV+ CP    Y+ E+ L  ++ D CI CG C   CP  A
Sbjct: 83  VPKQCNHCENAPCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGA 133


>gi|158522308|ref|YP_001530178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511134|gb|ABW68101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 378

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V T+ CI C   DCV  C    +    EGE    I+ ++C+ CG C   CP  +++
Sbjct: 197 VKTKTCIGCG--DCVAHCAHGAIRLVKEGEKKALINEEKCVGCGECIVVCPTGSVQ 250


>gi|85703194|ref|ZP_01034298.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
 gi|85672122|gb|EAQ26979.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
          Length = 164

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P+    CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSVRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIDAEP 86


>gi|187731222|ref|YP_001881533.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii
           CDC 3083-94]
 gi|187428214|gb|ACD07488.1| formate hydrogenlyase, subunit F [Shigella boydii CDC 3083-94]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|94310165|ref|YP_583375.1| benzoyl-CoA oxygenase subunit A [Cupriavidus metallidurans CH34]
 gi|93354017|gb|ABF08106.1| Benzoyl-CoA oxygenase component A [Cupriavidus metallidurans
          CH34]
          Length = 415

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     +    +  D C  C  C   CP  AI
Sbjct: 15 EICIRC--NTCEDTCPIDAITHDDRNYVVKADVCNACNACLSPCPTGAI 61



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHD 35


>gi|316965841|gb|EFV50509.1| putative ABC transporter, ATP-binding protein [Trichinella
          spiralis]
          Length = 610

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDE---------CIDCGVCEPE 49
          +T +   N   CK  +C +VC   C     G+  + + P           CI CG+C  +
Sbjct: 15 ITRIAIVNNDRCKPKNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFISESLCIGCGICVKK 74

Query: 50 CPVDAI 55
          CP DAI
Sbjct: 75 CPYDAI 80


>gi|302392713|ref|YP_003828533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204790|gb|ADL13468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 100

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 16  DCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
           +C+ +CP +  Y+ ++   +  +   C DCG C  +CP +AI  +    +E+  + +S  
Sbjct: 15  ECIRICPGNLLYQAQSGAIMIRNKKNCWDCGACVKKCPQEAI--EMYLPVEIGGRGSSLK 72

Query: 74  ATQWPNITTKKESLPSAAKMDGVKQKY 100
           A+Q  N     + +    K DG K+++
Sbjct: 73  ASQKEN-----KLIWKLKKFDGSKKQF 94


>gi|297617602|ref|YP_003702761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145439|gb|ADI02196.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 287

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
             C+ C    C+EVCP   + + E    +H P  CI C  C   CP +  K
Sbjct: 72  HQCMHCDEPACMEVCPRQAYSKNEWGATVHDPSRCIGCQYCHYACPWNVPK 122


>gi|296166768|ref|ZP_06849191.1| formate dehydrogenase-O, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897880|gb|EFG77463.1| formate dehydrogenase-O, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 339

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 156 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVI 208


>gi|253989599|ref|YP_003040955.1| electron transport complex protein RnfB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781049|emb|CAQ84211.1| 4Fe-4S ferredoxin, iron-sulphur binding [Photorhabdus asymbiotica]
          Length = 205

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 109 VAFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVVEDLCTGCDLCVAPCPTDCI 162


>gi|220935354|ref|YP_002514253.1| sulfite reductase, dissimilatory-type beta subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996664|gb|ACL73266.1| sulfite reductase, dissimilatory-type beta subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 359

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 11  LCKHTDCVEVCPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+    V  CPV         G+  L +   +CI CG C P CP   I       L +W
Sbjct: 204 VCERPSVVARCPVAAIRPALVNGKPSLEVDEKKCICCGACYPPCPPMQINDAEHTKLAIW 263

Query: 67  LKINSEYATQWP 78
           +  N   A   P
Sbjct: 264 VGGNHSNARGKP 275


>gi|160888148|ref|ZP_02069151.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|317478948|ref|ZP_07938095.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156862283|gb|EDO55714.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|316904925|gb|EFV26732.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 486

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP    +  E+  A I  D CI CG+C   CP  AI
Sbjct: 114 INYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAI 169


>gi|118474328|ref|YP_891343.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413554|gb|ABK81974.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 211

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C  C    C  VCP         ++ +H   CI C +C   CP  AI  D+
Sbjct: 49  VMPNQCRQCDDAPCALVCPSSALRNENGYVEMHEQLCIGCALCVNACPYGAIHLDS 104


>gi|62182728|ref|YP_219145.1| putative nitrite reductase; formate-dependent, Fe-S centers
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224586045|ref|YP_002639844.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62130361|gb|AAX68064.1| putative nitrite reductase; formate-dependent, Fe-S centers
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224470573|gb|ACN48403.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322717228|gb|EFZ08799.1| Protein nrfC [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326630202|gb|EGE36545.1| putative nitrite reductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 223

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKP--DTE 60
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P   T 
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTA 149

Query: 61  PGLELWLKINSEYATQ 76
              +   KIN +   Q
Sbjct: 150 DKCDFCRKINLKAGKQ 165


>gi|332754929|gb|EGJ85294.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 4343-70]
          Length = 162

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 40  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 97

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 98  LTPDFEMG 105


>gi|307720678|ref|YP_003891818.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978771|gb|ADN08806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 187

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 12  CKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+H D   C EVCP    Y  EN  + ++ D+CI C  C   CP DA   D
Sbjct: 64  CQHCDDAPCEEVCPTHATYYDENGVVRVNADKCILCSYCMNACPYDARYVD 114


>gi|289191966|ref|YP_003457907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938416|gb|ADC69171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 141

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    C+  CP +      + + +  D+CI CG+C   CP  AI+ D      + +K
Sbjct: 33  CMHCDKNPCLYACPENAIERINDKVVVIKDKCIGCGLCALACPFGAIRIDG-----VAIK 87

Query: 69  INSEYATQWPNITTKKESLPSAA 91
            N  Y     ++   KE  P+ A
Sbjct: 88  CNGCYKR---DVEICKEVCPTGA 107


>gi|224023700|ref|ZP_03642066.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
 gi|224016922|gb|EEF74934.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
          Length = 322

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI
Sbjct: 218 SASCIGC--GKCVKVCPFEAITLENNLAYIDPAKCKSCRKCEMECPKGAI 265


>gi|158334815|ref|YP_001515987.1| 4Fe-4S type ferredoxin [Acaryochloris marina MBIC11017]
 gi|158305056|gb|ABW26673.1| ferredoxin, 4Fe-4S type [Acaryochloris marina MBIC11017]
          Length = 378

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPD 58
           CV+VCP D          +  D C  CG C P CP++ I       KPD
Sbjct: 107 CVQVCPADAIAFPSP--GVMSDRCYGCGRCLPVCPIEQIATVSHTAKPD 153


>gi|86157250|ref|YP_464035.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773761|gb|ABC80598.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 310

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++++ C  C+   C+E CP       E   + I PD C  CG C   CP   +
Sbjct: 125 MMSDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVV 177


>gi|16755057|gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum]
          Length = 604

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+EV PV           I  + CI CG+C  +CP DAI+
Sbjct: 38 CIEVSPV------AKLAFISEELCIGCGICVKKCPFDAIE 71


>gi|315652760|ref|ZP_07905734.1| electron transfer flavoprotein alpha subunit [Eubacterium
          saburreum DSM 3986]
 gi|315484962|gb|EFU75370.1| electron transfer flavoprotein alpha subunit [Eubacterium
          saburreum DSM 3986]
          Length = 393

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+ VV E +C  C  T CV+ CP D     EN  A+    C  CG C   CP DAI  D
Sbjct: 1  MSVVVIEKDCRGC--TKCVKSCPFDAITM-ENKKAVIGIACTSCGTCIEVCPFDAIVKD 56


>gi|270297051|ref|ZP_06203250.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273038|gb|EFA18901.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 486

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP    +  E+  A I  D CI CG+C   CP  AI
Sbjct: 114 INYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAI 169


>gi|220915989|ref|YP_002491293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953843|gb|ACL64227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 310

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++++ C  C+   C+E CP       E   + I PD C  CG C   CP   +    + G
Sbjct: 125 MMSDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVVDRREDDG 184


>gi|332797651|ref|YP_004459151.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332695386|gb|AEE94853.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus
           hospitalis W1]
          Length = 633

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 7   ENCILCKHTDCVEVCPVD------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C+ CK  DC   CPV        F +   F ++   +CI  G C   CP D I
Sbjct: 564 QQCLNCKTVDCATACPVGLTDMRASFIKNGEFRSM---KCIGIGECVNACPYDNI 615


>gi|323697506|ref|ZP_08109418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio sp. ND132]
 gi|323457438|gb|EGB13303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio desulfuricans ND132]
          Length = 58

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 17 CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  VCP D     EG+N+  I  D CIDCG CE EC  +AI 
Sbjct: 15 CQSVCPSDAIIHPEGKNYYEITED-CIDCGSCEAECGFNAIS 55


>gi|301057791|ref|ZP_07198860.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300448102|gb|EFK11798.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 574

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 24/71 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------------------YEGENFLAIHPDECIDCG 44
           E CI C++  C++V P DC                       +E  N + I    CI CG
Sbjct: 494 ERCIYCRY--CIDVAPRDCIKLVNGVETNDDGAIIGFVETSEWEKVNAVIIDNKRCIRCG 551

Query: 45  VCEPECPVDAI 55
            C   CP+D I
Sbjct: 552 ECVRVCPMDCI 562


>gi|294141107|ref|YP_003557085.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
 gi|293327576|dbj|BAJ02307.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
          Length = 189

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGAGKLMHTVITDYCTGCDLCVEPCPVDCI 159


>gi|269105012|ref|ZP_06157708.1| hydrogenase 4 Fe-S subunit [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161652|gb|EEZ40149.1| hydrogenase 4 Fe-S subunit [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 216

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++C+H +   C  VCPV    + ++ + ++   C+ C +C   CP  AI  D    + + 
Sbjct: 63  VMCRHCEDAPCAAVCPVQAITKQDDRVLLNETLCVGCTLCAVACPFGAIAFDGSRPIAMA 122

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMD 94
              +  Y    P  +    S+PS    D
Sbjct: 123 NSYDI-YIPSTPRSSNPSTSIPSTFGQD 149


>gi|237654368|ref|YP_002890682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237625615|gb|ACR02305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 710

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI--KPDT 59
           + ++ C LC    C   CP        +   L      C+ CG+CE  CP  AI  +P  
Sbjct: 569 IASDACTLC--MSCTGACPAGALRAASDAYRLEFVEKNCLQCGLCEASCPESAITLEPRL 626

Query: 60  EPG 62
            PG
Sbjct: 627 LPG 629


>gi|242277663|ref|YP_002989792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120557|gb|ACS78253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 259

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 10  ILCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-TEPGLE 64
           +LC H +   CV VCP    F   +  +A+    CI C  C   CP  A   + ++P L 
Sbjct: 118 LLCNHCESPSCVRVCPTKATFKRPDGIVAMDYHRCIGCRYCMTGCPYGARSFNFSDPRLH 177

Query: 65  LWL-KINSEYATQWPNITTK 83
           + + KIN ++ T+   +  K
Sbjct: 178 MDMDKINEKFPTRMRGVVEK 197


>gi|145614552|ref|XP_362155.2| hypothetical protein MGG_11382 [Magnaporthe oryzae 70-15]
 gi|145021461|gb|EDK05590.1| hypothetical protein MGG_11382 [Magnaporthe oryzae 70-15]
          Length = 606

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
          +C + CPV     G+  + + PD          CI CG+C  +CP DAI
Sbjct: 20 ECKKSCPV--VRSGKLCIEVSPDSRIAYLSETLCIGCGICPKKCPFDAI 66


>gi|91226902|ref|ZP_01261499.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 12G01]
 gi|91188865|gb|EAS75150.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 12G01]
          Length = 255

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|70607815|ref|YP_256685.1| hypothetical protein Saci_2098 [Sulfolobus acidocaldarius DSM 639]
 gi|68568463|gb|AAY81392.1| conserved Archaeal membrane protein [Sulfolobus acidocaldarius DSM
           639]
          Length = 467

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           + C+ CK  DC   CPV       NF+        +CI  G C   CP D I
Sbjct: 394 QQCLNCKTVDCALACPVGLTDMRANFIKKGEFKSFKCIGVGDCVEACPHDNI 445


>gi|325969146|ref|YP_004245338.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
 gi|323708349|gb|ADY01836.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
          Length = 616

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           I P+ C+ C VC   CP DAIKP  E  ++ WL+
Sbjct: 580 IDPNMCVGCSVCAQVCPYDAIKP--EGNVKDWLR 611


>gi|313672286|ref|YP_004050397.1| NADH-quinone oxidoreductase, chain i [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939042|gb|ADR18234.1| NADH-quinone oxidoreductase, chain I [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 145

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 17  CVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           C +VCP +C +        GE  +    I  D CI CG CE  CP DAI
Sbjct: 66  CQKVCPSECIHIETDAGPNGERLIRKFEIELDRCIYCGFCEEACPKDAI 114


>gi|283787038|ref|YP_003366903.1| polyferredoxin [Citrobacter rodentium ICC168]
 gi|282950492|emb|CBG90157.1| putative polyferredoxin [Citrobacter rodentium ICC168]
          Length = 285

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 13 KHT--DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +HT   C + CPV       N   +  + CI CG C   CPVDA++
Sbjct: 20 RHTCDACRQACPVGAISFTANAATLDSERCIRCGHCAFACPVDALE 65


>gi|242399760|ref|YP_002995185.1| Indolepyruvate: ferredoxin oxidoreductase (IOR), subunit alpha
           [Thermococcus sibiricus MM 739]
 gi|242266154|gb|ACS90836.1| Indolepyruvate: ferredoxin oxidoreductase (IOR), subunit alpha
           [Thermococcus sibiricus MM 739]
          Length = 632

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C  CK    +  CP   F E    +++    C  CG+CE  CP D I
Sbjct: 575 VIKDKCTGCKACALLTGCPALVFDEERGKISVDSLICTGCGLCEQLCPFDVI 626


>gi|240102880|ref|YP_002959189.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239910434|gb|ACS33325.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 204

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V  NC  C++  C+EVCP    ++ E+  + +   +CI C +C   CP    + DT 
Sbjct: 60  AYNVPMNCRHCENAPCMEVCPTGAIFKDEDGAVLVDTSKCIGCKMCAIVCPFGIPEFDTL 119

Query: 61  PGL 63
            G+
Sbjct: 120 NGV 122


>gi|238753747|ref|ZP_04615108.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473]
 gi|238707983|gb|EEQ00340.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHQDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|163741305|ref|ZP_02148697.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385658|gb|EDQ10035.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 431

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +T +C LC+   C  VCP +     EN   L     +C+ CG+C   C  +AI+    P 
Sbjct: 246 LTGDCTLCQA--CTWVCPTNALIGAENGGGLDFVEADCMQCGLCVSVCRQNAIR--LVPR 301

Query: 63  LEL 65
           LEL
Sbjct: 302 LEL 304


>gi|148270023|ref|YP_001244483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga petrophila RKU-1]
 gi|147735567|gb|ABQ46907.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           petrophila RKU-1]
          Length = 357

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YVV E C+ C    C + CPV           I  ++CI CG C   C   A+ P  +  
Sbjct: 189 YVVEEKCVAC--GTCAKFCPVGAITV-TKVAKIDYEKCIGCGQCIAMCSYGAMSPKWDSS 245

Query: 63  LELWLKINSEYA 74
            +   K  +EYA
Sbjct: 246 TDSLSKKMAEYA 257


>gi|134045159|ref|YP_001096645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662784|gb|ABO34430.1| membrane-bound hydrogenase subunit ehaR [Methanococcus maripaludis
           C5]
          Length = 252

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           NC++C      E+CPV      +  + +   +CI CG CE  CPV AI
Sbjct: 203 NCMVCS-----EICPVGAIIYEDGLMKLDDKKCIFCGKCEKNCPVTAI 245


>gi|117621401|ref|YP_857038.1| hydrogenase 2 protein HybA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562808|gb|ABK39756.1| hydrogenase-2 operon protein HybA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 341

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +H  PD C  C  C   CP D  K D
Sbjct: 109 IKKQCMHCVDPNCVSVCPVQALTKDPKTGIVHYDPDVCTGCRYCMVGCPFDVPKYD 164


>gi|78222168|ref|YP_383915.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193423|gb|ABB31190.1| Indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
           [Geobacter metallireducens GS-15]
          Length = 601

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++ C  C++      CP   + E E  +AI    C DCGVC   CP  AI+
Sbjct: 546 ISDACNGCRYCTTQFECPALVYDEEEKRVAIDTLICTDCGVCIDVCPRLAIE 597


>gi|84516958|ref|ZP_01004315.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84509076|gb|EAQ05536.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 253

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+   +  + ++  +CI C +C   CP  A + D + G+
Sbjct: 80  KSCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEADCIGCSLCAWACPYGARELDAKAGV 138


>gi|157157477|ref|YP_001464032.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           E24377A]
 gi|218696314|ref|YP_002403981.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           55989]
 gi|256019501|ref|ZP_05433366.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
 gi|260856827|ref|YP_003230718.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O26:H11 str. 11368]
 gi|260869395|ref|YP_003235797.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O111:H- str. 11128]
 gi|293449036|ref|ZP_06663457.1| hycF [Escherichia coli B088]
 gi|300820495|ref|ZP_07100646.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300906777|ref|ZP_07124459.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300919244|ref|ZP_07135767.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300922238|ref|ZP_07138364.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|301305389|ref|ZP_07211483.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|301326245|ref|ZP_07219628.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|331669453|ref|ZP_08370299.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA271]
 gi|331678694|ref|ZP_08379368.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H591]
 gi|332280623|ref|ZP_08393036.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
 gi|157079507|gb|ABV19215.1| formate hydrogenlyase, subunit F [Escherichia coli E24377A]
 gi|218353046|emb|CAU98871.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           55989]
 gi|257755476|dbj|BAI26978.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O26:H11 str. 11368]
 gi|257765751|dbj|BAI37246.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O111:H- str. 11128]
 gi|291322126|gb|EFE61555.1| hycF [Escherichia coli B088]
 gi|300401471|gb|EFJ85009.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300413689|gb|EFJ96999.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300421368|gb|EFK04679.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|300526759|gb|EFK47828.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300839309|gb|EFK67069.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|300847090|gb|EFK74850.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|315254502|gb|EFU34470.1| hydrogenase 4 subunit H [Escherichia coli MS 85-1]
 gi|320202370|gb|EFW76940.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli EC4100B]
 gi|323154936|gb|EFZ41128.1| formate hydrogenlyase subunit 6 [Escherichia coli EPECa14]
 gi|323180141|gb|EFZ65693.1| formate hydrogenlyase subunit 6 [Escherichia coli 1180]
 gi|323183247|gb|EFZ68644.1| formate hydrogenlyase subunit 6 [Escherichia coli 1357]
 gi|323946399|gb|EGB42427.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324119970|gb|EGC13848.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|331063121|gb|EGI35034.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA271]
 gi|331073524|gb|EGI44845.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H591]
 gi|332102975|gb|EGJ06321.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|116751281|ref|YP_847968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700345|gb|ABK19533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 358

 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEPG 62
           E C V+   +  +F  I  D CI CG+C   CP +AI    +   EPG
Sbjct: 286 ERCQVEAIRDEGDFYRIVGDRCIGCGLCATTCPEEAIALMRRQPEEPG 333


>gi|323978670|gb|EGB73752.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|319901972|ref|YP_004161700.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417003|gb|ADV44114.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
          Length = 486

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP    +  E+  A I  D CI CG+C   CP  AI
Sbjct: 114 INYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAI 169


>gi|294675135|ref|YP_003575751.1| aldo/keto reductase family oxidoreductase [Prevotella ruminicola
           23]
 gi|294472046|gb|ADE81435.1| oxidoreductase, aldo/keto reductase family [Prevotella ruminicola
           23]
          Length = 468

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 36  HPDECIDCGVCEPECP 51
            PD CI CG CEP CP
Sbjct: 425 QPDHCIQCGQCEPHCP 440


>gi|283852140|ref|ZP_06369414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283572530|gb|EFC20516.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 576

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           + P +CI CG+CE ECPV  ++
Sbjct: 536 VDPGKCIGCGMCEHECPVSGLR 557


>gi|264678475|ref|YP_003278382.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
 gi|262208988|gb|ACY33086.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
          Length = 220

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 21/97 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C++ CP D        + ++  + C  C +C P CPVD I+          L
Sbjct: 90  CIGC--TLCIKACPTDAILGANKRMHSVSAEHCTGCELCIPVCPVDCIE----------L 137

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
              S  AT W        S  SAA+ +  + +Y  + 
Sbjct: 138 VNASAEATGW--------SAWSAAQAEHARHRYGVHL 166


>gi|262117753|dbj|BAI47848.1| putative reductive dehalogenase [uncultured bacterium]
          Length = 459

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---------CEPECPVDAI 55
           +TENC +   + C E  P    Y+    L + P + ID GV         C   CP  +I
Sbjct: 282 LTENCRMSLTSMCPEHGPQMRIYKVITSLPLAPTKPIDFGVFKFCSTCKLCADACPAGSI 341

Query: 56  KPDTEPGLEL 65
           K DTEP  ++
Sbjct: 342 KDDTEPSWDI 351


>gi|218459472|ref|ZP_03499563.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Rhizobium etli
           Kim 5]
          Length = 205

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 62  KCVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 117


>gi|218706214|ref|YP_002413733.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UMN026]
 gi|293406212|ref|ZP_06650138.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1412]
 gi|298381949|ref|ZP_06991546.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300899959|ref|ZP_07118162.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|331664274|ref|ZP_08365180.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA143]
 gi|218433311|emb|CAR14211.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           UMN026]
 gi|284922656|emb|CBG35744.1| formate hydrogenlyase subunit 6 [Escherichia coli 042]
 gi|291426218|gb|EFE99250.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1412]
 gi|298277089|gb|EFI18605.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300356468|gb|EFJ72338.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|331058205|gb|EGI30186.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA143]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|218555264|ref|YP_002388177.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           IAI1]
 gi|300815876|ref|ZP_07096100.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
 gi|218362032|emb|CAQ99639.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           IAI1]
 gi|300531805|gb|EFK52867.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVEADLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|212223688|ref|YP_002306924.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
 gi|212008645|gb|ACJ16027.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
          Length = 163

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           NC  C+   C+EVCP    Y  E+  + I   +CI C +C   CP     P  +P  EL 
Sbjct: 44  NCRHCEKAPCIEVCPTKAIYRDEDGAVVIDESKCIGCYMCSAVCPYAI--PIVDPIKELA 101

Query: 67  LK 68
           +K
Sbjct: 102 VK 103


>gi|90408373|ref|ZP_01216536.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
 gi|90310536|gb|EAS38658.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
          Length = 190

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CP D I
Sbjct: 105 LAFIREDECIGC--TKCIQACPVDAILGATRQMHTVITDECTGCELCVAPCPTDCI 158


>gi|312880741|ref|ZP_07740541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310784032|gb|EFQ24430.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 267

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C  +CP       E  L +  D C+ C  C   CP DA++
Sbjct: 196 DRCVRCGR--CARLCPAGNIAWQEGLLPVWQDRCVVCQRCAAVCPHDAVR 243


>gi|297584150|ref|YP_003699930.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Bacillus selenitireducens MLS10]
 gi|297142607|gb|ADH99364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          selenitireducens MLS10]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ +C  C+  +C+ VCP   F  + +  + ++   C  CG+C   CP DAI
Sbjct: 47 LSSSCHHCQSPECLRVCPKQTFSKDRDGIVKLNEQICDGCGLCAAACPFDAI 98


>gi|293412078|ref|ZP_06654801.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|291468849|gb|EFF11340.1| 4Fe-4S ferredoxin [Escherichia coli B354]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDIATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|163736166|ref|ZP_02143585.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
 gi|161390036|gb|EDQ14386.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
          Length = 415

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +T +C LC+   C  VCP +     EN   L     +C+ CG+C   C  +AI+    P 
Sbjct: 230 LTGDCTLCQA--CTWVCPTNALIGAENGGGLDFVEADCMQCGLCVSVCRQNAIR--LVPR 285

Query: 63  LEL 65
           LEL
Sbjct: 286 LEL 288


>gi|157165183|ref|YP_001467594.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           concisus 13826]
 gi|157101508|gb|EAT98488.2| selenate reductase subunit beta (Selenate reductaseiron-sulfur
           subunit) [Campylobacter concisus 13826]
          Length = 245

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H +   C++VCP    Y+  N  + I   ECI C +C   CP  A
Sbjct: 93  LCNHCNKPACIDVCPTGASYQRSNGIVKIDTKECIGCALCVEACPYHA 140


>gi|15803237|ref|NP_289269.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15832830|ref|NP_311603.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|74313287|ref|YP_311706.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sonnei
           Ss046]
 gi|82545205|ref|YP_409152.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii
           Sb227]
 gi|110806653|ref|YP_690173.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella
           flexneri 5 str. 8401]
 gi|157162166|ref|YP_001459484.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           HS]
 gi|168749955|ref|ZP_02774977.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755465|ref|ZP_02780472.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762881|ref|ZP_02787888.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768811|ref|ZP_02793818.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774748|ref|ZP_02799755.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778702|ref|ZP_02803709.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787975|ref|ZP_02812982.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC869]
 gi|168800199|ref|ZP_02825206.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC508]
 gi|170019034|ref|YP_001723988.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           ATCC 8739]
 gi|188492377|ref|ZP_02999647.1| iron-sulfur binding domain protein [Escherichia coli 53638]
 gi|191166826|ref|ZP_03028652.1| formate hydrogenlyase, subunit F [Escherichia coli B7A]
 gi|193065016|ref|ZP_03046091.1| formate hydrogenlyase, subunit F [Escherichia coli E22]
 gi|194427901|ref|ZP_03060447.1| formate hydrogenlyase, subunit F [Escherichia coli B171]
 gi|194438985|ref|ZP_03071069.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1]
 gi|195938470|ref|ZP_03083852.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805909|ref|ZP_03248246.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813713|ref|ZP_03255042.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818938|ref|ZP_03259258.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396172|ref|YP_002272183.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327035|ref|ZP_03443118.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547772|ref|YP_002381563.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia
           fergusonii ATCC 35469]
 gi|253772425|ref|YP_003035256.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037759|ref|ZP_04871817.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
 gi|254162651|ref|YP_003045759.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B str. REL606]
 gi|254794660|ref|YP_003079497.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|260845363|ref|YP_003223141.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O103:H2 str. 12009]
 gi|261226014|ref|ZP_05940295.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256728|ref|ZP_05949261.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291284047|ref|YP_003500865.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415970|ref|ZP_06658610.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B185]
 gi|300930578|ref|ZP_07145970.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|301027130|ref|ZP_07190499.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|307312857|ref|ZP_07592487.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309795180|ref|ZP_07689599.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|312973070|ref|ZP_07787243.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70]
 gi|331654197|ref|ZP_08355197.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M718]
 gi|331674228|ref|ZP_08374988.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA280]
 gi|331684333|ref|ZP_08384925.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H299]
 gi|12517168|gb|AAG57827.1|AE005500_6 probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)
           [Escherichia coli O157:H7 str. EDL933]
 gi|13363047|dbj|BAB36999.1| formate hydrogenlyase subunit-7 component F [Escherichia coli
           O157:H7 str. Sakai]
 gi|73856764|gb|AAZ89471.1| probable iron-sulfur protein of hydrogenase 3 [Shigella sonnei
           Ss046]
 gi|81246616|gb|ABB67324.1| probable iron-sulfur protein of hydrogenase 3 [Shigella boydii
           Sb227]
 gi|110616201|gb|ABF04868.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)
           [Shigella flexneri 5 str. 8401]
 gi|157067846|gb|ABV07101.1| formate hydrogenlyase, subunit F [Escherichia coli HS]
 gi|169753962|gb|ACA76661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|187769586|gb|EDU33430.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015821|gb|EDU53943.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487576|gb|EDU62679.1| iron-sulfur binding domain protein [Escherichia coli 53638]
 gi|189003527|gb|EDU72513.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357266|gb|EDU75685.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362055|gb|EDU80474.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366888|gb|EDU85304.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372135|gb|EDU90551.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC869]
 gi|189377500|gb|EDU95916.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC508]
 gi|190903197|gb|EDV62920.1| formate hydrogenlyase, subunit F [Escherichia coli B7A]
 gi|192927313|gb|EDV81932.1| formate hydrogenlyase, subunit F [Escherichia coli E22]
 gi|194414134|gb|EDX30410.1| formate hydrogenlyase, subunit F [Escherichia coli B171]
 gi|194422106|gb|EDX38109.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1]
 gi|208725710|gb|EDZ75311.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734990|gb|EDZ83677.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739061|gb|EDZ86743.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157572|gb|ACI35005.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761900|gb|ACI79262.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761902|gb|ACI79263.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761904|gb|ACI79264.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761906|gb|ACI79265.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|217319402|gb|EEC27827.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           TW14588]
 gi|218355313|emb|CAQ87920.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia
           fergusonii ATCC 35469]
 gi|222034414|emb|CAP77156.1| Formate hydrogenlyase subunit 6 [Escherichia coli LF82]
 gi|226839383|gb|EEH71404.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
 gi|242378277|emb|CAQ33052.1| formate hydrogenlyase complex iron-sulfur protein, subunit of
           hydrogenase 3 and formate hydrogenlyase complex
           [Escherichia coli BL21(DE3)]
 gi|253323469|gb|ACT28071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974552|gb|ACT40223.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           B str. REL606]
 gi|253978719|gb|ACT44389.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BL21(DE3)]
 gi|254594060|gb|ACT73421.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|257760510|dbj|BAI32007.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O103:H2 str. 12009]
 gi|290763920|gb|ADD57881.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str.
           CB9615]
 gi|291432159|gb|EFF05141.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B185]
 gi|300395162|gb|EFJ78700.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|300461520|gb|EFK25013.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|306907292|gb|EFN37798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|308121151|gb|EFO58413.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|309703079|emb|CBJ02411.1| formate hydrogenlyase subunit 6 [Escherichia coli ETEC H10407]
 gi|310333012|gb|EFQ00226.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70]
 gi|312947249|gb|ADR28076.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315061996|gb|ADT76323.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           W]
 gi|315298792|gb|EFU58046.1| hydrogenase 4 subunit H [Escherichia coli MS 16-3]
 gi|320173427|gb|EFW48626.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           dysenteriae CDC 74-1112]
 gi|320186506|gb|EFW61234.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           flexneri CDC 796-83]
 gi|320189052|gb|EFW63711.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. EC1212]
 gi|320640363|gb|EFX09902.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320656760|gb|EFX24648.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662303|gb|EFX29700.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667354|gb|EFX34312.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323159852|gb|EFZ45823.1| formate hydrogenlyase subunit 6 [Escherichia coli E128010]
 gi|323167105|gb|EFZ52823.1| formate hydrogenlyase subunit 6 [Shigella sonnei 53G]
 gi|323172992|gb|EFZ58623.1| formate hydrogenlyase subunit 6 [Escherichia coli LT-68]
 gi|323377421|gb|ADX49689.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           KO11]
 gi|323935724|gb|EGB32038.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941449|gb|EGB37632.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323960620|gb|EGB56246.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971551|gb|EGB66784.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|324111345|gb|EGC05327.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|325496239|gb|EGC94098.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia
           fergusonii ECD227]
 gi|326339208|gb|EGD63023.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. 1044]
 gi|326342909|gb|EGD66677.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. 1125]
 gi|331047579|gb|EGI19656.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M718]
 gi|331068322|gb|EGI39717.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA280]
 gi|331077948|gb|EGI49154.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H299]
 gi|332091881|gb|EGI96959.1| formate hydrogenlyase subunit 6 [Shigella boydii 3594-74]
 gi|332344601|gb|AEE57935.1| formate hydrogenlyase subunit 6 [Escherichia coli UMNK88]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|325958330|ref|YP_004289796.1| glutamate synthase (NADPH) [Methanobacterium sp. AL-21]
 gi|325329762|gb|ADZ08824.1| Glutamate synthase (NADPH) [Methanobacterium sp. AL-21]
          Length = 503

 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 11 LCKHT-DCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          LCK+   C   CP D +   + E +  +H + C+ C +CE  CP +AI+ +  P
Sbjct: 33 LCKNCYSCFNNCPHDVYEIIDDEPY-PLHHENCVGCRICEEMCPNNAIEVNAVP 85


>gi|197283983|ref|YP_002149855.1| hypothetical protein PMI0070 [Proteus mirabilis HI4320]
 gi|227358148|ref|ZP_03842489.1| oxidoreductase, Fe-S subunit [Proteus mirabilis ATCC 29906]
 gi|194681470|emb|CAR40309.1| putative oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
 gi|227161484|gb|EEI46521.1| oxidoreductase, Fe-S subunit [Proteus mirabilis ATCC 29906]
          Length = 209

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           T+ C  CK  +C+ VCPV      E F  + +    CI C  C   CP  +  + P T+
Sbjct: 121 TDTCRQCKTPECMNVCPVKAIRYQEEFGCIVVDTRRCIGCAACTTACPWMMATVNPQTK 179


>gi|82703818|ref|YP_413384.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|82411883|gb|ABB75992.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
          Length = 259

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++VCPVD           +   EC  C +C   CPVD I+
Sbjct: 84  QACIGC--TVCIQVCPVDAIVGAARQMHTVISGECTGCSLCLEPCPVDCIQ 132


>gi|331000171|ref|ZP_08323861.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
 gi|329572656|gb|EGG54291.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
          Length = 194

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           Y V   C  C    CV+VCP    +  E +  + I   +CI CG C   CP  A
Sbjct: 61  YYVPVGCNECADPACVKVCPTKAHFKRESDGLVLIDEKKCIGCGACAQACPYGA 114


>gi|330834494|ref|YP_004409222.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
 gi|329566633|gb|AEB94738.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
          Length = 605

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 4   VVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V +E C  C  T C +   CP     E +  + I+ +ECI CG C P CP  AI  + E
Sbjct: 539 VDSERCTGC--TICYDHFTCPAILKLENKKAV-INQNECIGCGACVPVCPYKAITLEGE 594


>gi|325830275|ref|ZP_08163732.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487742|gb|EGC90180.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 398

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CI  ++ +     CVE C           L + P+ CI CG C   CP  AI+
Sbjct: 24 ERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPERCIGCGTCATACPTCAIE 78


>gi|323699800|ref|ZP_08111712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459732|gb|EGB15597.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 370

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +NC  C+   C+  C     Y  E    +A++P++C+ CG C   C    ++ +   G++
Sbjct: 193 DNCQACEA--CLRACKTGALYIDETTGKIALNPEKCVGCGGCFVACRHGGLQVNWAVGVQ 250

Query: 65  LWLKINSEYA 74
            +L+   EYA
Sbjct: 251 DFLERMMEYA 260


>gi|257790250|ref|YP_003180856.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|317489711|ref|ZP_07948214.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|257474147|gb|ACV54467.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
 gi|316911177|gb|EFV32783.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 398

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CI  ++ +     CVE C           L + P+ CI CG C   CP  AI+
Sbjct: 24 ERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPERCIGCGTCATACPTCAIE 78


>gi|218885423|ref|YP_002434744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756377|gb|ACL07276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 169

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECP 51
           C  C+  +CV+VCP       E +  + +  D+CI CG C   CP
Sbjct: 60  CFHCEQPECVDVCPTGAMTKREADGIVYVEADDCIGCGACLEACP 104


>gi|198275773|ref|ZP_03208304.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
 gi|198271402|gb|EDY95672.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
          Length = 321

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--------KPDTE 60
           CI C    CV+VCP +      N   I P +C  C  CE ECP  AI        KP  E
Sbjct: 221 CIGCGK--CVKVCPFEAITLENNLAYIDPAKCKSCRKCEMECPQQAIVAVNFPPRKPKAE 278

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSA 90
                   +    A        K E++ SA
Sbjct: 279 APAAEKTAVEKTVAASPKTEAVKNETVTSA 308


>gi|119897457|ref|YP_932670.1| iron-sulfur bindinding oxidase [Azoarcus sp. BH72]
 gi|119669870|emb|CAL93783.1| conserved hypothetical iron-sulfur bindinding oxidase [Azoarcus sp.
           BH72]
          Length = 925

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 38  DECIDCGVCEPECP 51
           D CI+CG CEP+CP
Sbjct: 538 DRCIECGFCEPQCP 551


>gi|86359334|ref|YP_471226.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN 42]
 gi|115502513|sp|Q2K3T7|NUOI2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|86283436|gb|ABC92499.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN
           42]
          Length = 188

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 67  KCVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|260576927|ref|ZP_05844909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020863|gb|EEW24177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 544

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C    C  VCP +   +   G  F  I+ D C  CG+C  ECP  AI
Sbjct: 490 NCFECD--TCYGVCPDNAVIKLGSGMGF-TINLDYCKGCGICAAECPCGAI 537


>gi|218701212|ref|YP_002408841.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           IAI39]
 gi|218371198|emb|CAR19029.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           IAI39]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|209880614|ref|XP_002141746.1| RNase L inhibitor-like protein [Cryptosporidium muris RN66]
 gi|209557352|gb|EEA07397.1| RNase L inhibitor-like protein, putative [Cryptosporidium muris
          RN66]
          Length = 618

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----------CIDCGVCEPECPVDAI 55
          N  +CK  +C + C   C       L +  D            CI CG+C  +CP DAI
Sbjct: 25 NADMCKPKNCSQECKTFCPVVRTGKLCVEVDSTSKVATISESLCIGCGICVKKCPYDAI 83


>gi|183985165|ref|YP_001853456.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium marinum M]
 gi|183178491|gb|ACC43601.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium marinum M]
          Length = 296

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 113 MSSDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIE 166


>gi|167625926|ref|YP_001676220.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355948|gb|ABZ78561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 182

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ +C+ C +  C+ VCP   +    +  + +  D+C  CG+C   CP DA+
Sbjct: 57  LSHSCMHCGNPGCLMVCPSQAYSVRDDGLVVLDRDKCTGCGLCVNACPYDAV 108


>gi|297620127|ref|YP_003708232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297379104|gb|ADI37259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 253

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          Y+  + C+ C+   C+E CPVD   +   +N   I P++CI C +C   CPV AI
Sbjct: 43 YIQPKKCVHCEL--CLEACPVDAIEKPNLKNSAKIIPEKCIKCEICAKTCPVGAI 95



 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CI C    C ++CPV    Y+G+  + I  ++C+ CG+CE  CPV AI
Sbjct: 199 VETDKCIDC--MVCHDLCPVSAITYDGK--IIIDNEKCVHCGICEKNCPVSAI 247


>gi|153952957|ref|YP_001393722.1| hypothetical protein CKL_0320 [Clostridium kluyveri DSM 555]
 gi|219853615|ref|YP_002470737.1| hypothetical protein CKR_0272 [Clostridium kluyveri NBRC 12016]
 gi|146345838|gb|EDK32374.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219567339|dbj|BAH05323.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 253

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           D CI CG+CE +CPV+AIK     G  +W+
Sbjct: 188 DSCIGCGLCEKKCPVEAIK--MRNGKPVWI 215


>gi|114775434|ref|ZP_01451002.1| hypothetical protein SPV1_03878 [Mariprofundus ferrooxydans PV-1]
 gi|114553545|gb|EAU55926.1| hypothetical protein SPV1_03878 [Mariprofundus ferrooxydans PV-1]
          Length = 357

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C    CVE CP +      +     L   PD C  C  C   CP DA+  ++ PG+
Sbjct: 275 SCTACNQ--CVEQCPTEALGIREFGANKILEFQPDACTGCRQCVNTCPEDAL--ESLPGI 330

Query: 64  EL 65
            L
Sbjct: 331 SL 332


>gi|118359716|ref|XP_001013096.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila]
 gi|89294863|gb|EAR92851.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila SB210]
          Length = 324

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 18  VEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
            E  P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 199 FEKGPLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 245


>gi|85374152|ref|YP_458214.1| NADH dehydrogenase subunit I [Erythrobacter litoralis HTCC2594]
 gi|123409621|sp|Q2NA74|NUOI_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84787235|gb|ABC63417.1| NADH dehydrogenase I, I subunit [Erythrobacter litoralis HTCC2594]
          Length = 162

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 61  ERCIACKL--CEAVCPAQAITIESEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 118

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        N EY+T+     T++E L   AK+     K+E+  + N
Sbjct: 119 EGP----------NFEYSTE-----TREELLYDKAKLLANGDKWERAIAAN 154


>gi|89092446|ref|ZP_01165400.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp.
          MED92]
 gi|89083534|gb|EAR62752.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp.
          MED92]
          Length = 82

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP +AI P  E
Sbjct: 7  DECINCDVCEPECPNEAISPGDE 29


>gi|194432977|ref|ZP_03065260.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012]
 gi|194418704|gb|EDX34790.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012]
 gi|320180857|gb|EFW55780.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           boydii ATCC 9905]
 gi|332088651|gb|EGI93764.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 155-74]
          Length = 180

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|315923839|ref|ZP_07920068.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622872|gb|EFV02824.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 206

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + + CI C    C  +CP      G  + AI    C+ CG+C   CPVDAI
Sbjct: 151 FKIVDGCIGCDT--CAGLCPQQAIDAGTPY-AIRQANCLHCGLCFENCPVDAI 200


>gi|240102884|ref|YP_002959193.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239910438|gb|ACS33329.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 174

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
          I CKH D   C+ VCP    Y  E+  + IH D+CI C  C   CP
Sbjct: 46 INCKHCDDAPCLRVCPTHAIYRDEDGAVRIHEDKCIGCLACLQVCP 91


>gi|282600017|ref|ZP_05972741.2| hydrogenase-4 component A [Providencia rustigianii DSM 4541]
 gi|282566781|gb|EFB72316.1| hydrogenase-4 component A [Providencia rustigianii DSM 4541]
          Length = 187

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +LC+  D   C  VCPV+      + + ++   CI C +C   CP  AI P
Sbjct: 31 MLCRQCDDAPCARVCPVNAITHENDMIVLNESLCIGCKLCGLVCPFGAITP 81


>gi|261368062|ref|ZP_05980945.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
 gi|282570052|gb|EFB75587.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
          Length = 368

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV  E C+ C    CV++C  D  +  +   +I  ++C+ CG C   CP DA++
Sbjct: 191 YVKQELCVGCGR--CVKICAHDAPHIVDRKSSIDQNKCVGCGRCIGVCPTDAVR 242


>gi|197103275|ref|YP_002128653.1| NADPH-dependent glutamate synthase beta chain [Phenylobacterium
           zucineum HLK1]
 gi|196480551|gb|ACG80078.1| NADPH-dependent glutamate synthase beta chain [Phenylobacterium
           zucineum HLK1]
          Length = 546

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 8   NCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           NC  C    C   CP   ++    G  +  ++ D C  C VC   CP  AI+   EPG
Sbjct: 490 NCFECDQ--CYAACPEQAIEKLGPGRRYRYLY-DRCTGCAVCFETCPCHAIEMIQEPG 544


>gi|170743890|ref|YP_001772545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168198164|gb|ACA20111.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 947

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + CI    CE  CP
Sbjct: 769 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCIGTRFCEANCP 812


>gi|121534272|ref|ZP_01666096.1| electron transfer flavoprotein, alpha subunit [Thermosinus
          carboxydivorans Nor1]
 gi|121307042|gb|EAX47960.1| electron transfer flavoprotein, alpha subunit [Thermosinus
          carboxydivorans Nor1]
          Length = 399

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          V+ + C+ C    CV  CP        +  A   + C  CG C   CPV AI  + E
Sbjct: 5  VIKDQCVSCGA--CVSTCPFGAIIMESDNKAFITEACTACGACIDACPVGAIIREEE 59


>gi|86748604|ref|YP_485100.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
 gi|86571632|gb|ABD06189.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
          Length = 77

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 15 TDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          T CV+VCP+D        G+ F+A   DEC  C  CE +CP DA+K
Sbjct: 26 TVCVDVCPLDVLRISDLTGKAFMAY--DECWYCMPCEADCPTDAVK 69


>gi|33602759|ref|NP_890319.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33577201|emb|CAE35758.1| putative ferredoxin [Bordetella bronchiseptica RB50]
          Length = 213

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           +  V+ E +CI C  T C++ CPVD        +  +  D C  C +C   CPVD I  D
Sbjct: 78  LVAVIDEAHCIGC--TLCIKACPVDAIVGANKRMHTVLADWCTGCDLCVAPCPVDCI--D 133

Query: 59  TEPGLELW 66
             P   +W
Sbjct: 134 MRPAARVW 141


>gi|93005680|ref|YP_580117.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
 gi|92393358|gb|ABE74633.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
          Length = 280

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD     G++   I  D C  C +C   CPVD I
Sbjct: 123 DDCIGC--TKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCI 170


>gi|332528159|ref|ZP_08404190.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332112730|gb|EGJ12523.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 541

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC+ C   +C  VCP +   +      A+  D C  CG+C  ECP  AI
Sbjct: 488 NCLQCD--NCYGVCPDNAVKKLAPGRYAVDYDYCKGCGLCAVECPCGAI 534


>gi|296133745|ref|YP_003640992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296032323|gb|ADG83091.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 110

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 17  CVEVCPVDC-FYEGENFLAIH-PDECIDCGVCEPECPVDA---------------IKPDT 59
           CV VCP D  F +  N  A+  P +C DC  C  ECP  A               +K  +
Sbjct: 21  CVRVCPGDLLFKDSANRCAVRDPRDCWDCAACIKECPRQALEMYLPVQIGGRGATLKAKS 80

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPS 89
           E G+  W     +  T+   I T+ E   S
Sbjct: 81  EQGVLSWFLTKPDGTTETFIIKTRTEKSQS 110


>gi|293604806|ref|ZP_06687203.1| tetrathionate reductase subunit B [Achromobacter piechaudii ATCC
           43553]
 gi|292816634|gb|EFF75718.1| tetrathionate reductase subunit B [Achromobacter piechaudii ATCC
           43553]
          Length = 256

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA--IKPDTE 60
           LC H D   CV VCPV   ++ E+ + +  +E C+ C  C   CP DA  I  DT+
Sbjct: 111 LCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCAYCVQACPYDARFINHDTQ 166


>gi|167043306|gb|ABZ08011.1| putative ABC transporter [uncultured marine crenarchaeote
          HF4000_ANIW141M18]
          Length = 592

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 16 DCVEVCPV-----DCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
          +C++ CPV     DC    E  N   I  D C  CG+C   CP +AI
Sbjct: 21 ECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67


>gi|194290510|ref|YP_002006417.1| 4fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193224345|emb|CAQ70356.1| putative 4Fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424]
          Length = 721

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 12/57 (21%)

Query: 11  LCKH--------TDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H        T C+++C  +     +++G+  + + P+ C+ CG C   CP  AI
Sbjct: 332 LCAHGRNQTTGCTACIDICSTEAIASRWHDGKGRIEVAPNLCMGCGACTTVCPSGAI 388



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T  C LC    CV  CP     +      L+     C+ CG+C+  CP DA+
Sbjct: 585 VDTGKCTLC--LACVGACPSQALRDNPERPVLSFIERNCVQCGLCQKTCPEDAV 636


>gi|167746962|ref|ZP_02419089.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662]
 gi|167653922|gb|EDR98051.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662]
          Length = 438

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCP-------VDCFYEGENFLA---IHPDECIDCGVCEPECP 51
           NCI C    CV VCP       +    +  NF A   +H DEC++CG C   CP
Sbjct: 364 NCINCGR--CVSVCPQKLMPARLSVLADNNNFEAFEALHGDECVECGCCSFICP 415


>gi|150400949|ref|YP_001324715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150013652|gb|ABR56103.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 53

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V  NC+ C   +CV  CPVD          I  D C DCG+C   C +DA+K
Sbjct: 3  VLSNCVGCG--ECVVFCPVDAITT-YGIAIIDKDLCTDCGICAKYCQIDALK 51


>gi|20092967|ref|NP_619042.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
 gi|19918282|gb|AAM07522.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
          Length = 346

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 14  HTDCVEVCPVDCFYE-----GENFLAI--HPDECIDCGVCEPECPVDAI 55
           HT CVE CP +  +      GE    I   PD CI CG C   CPV+AI
Sbjct: 185 HT-CVETCPTNAIFNKKAKPGEKVEKISHRPDACIYCGACAVSCPVNAI 232


>gi|193069699|ref|ZP_03050651.1| formate hydrogenlyase, subunit F [Escherichia coli E110019]
 gi|192957062|gb|EDV87513.1| formate hydrogenlyase, subunit F [Escherichia coli E110019]
          Length = 180

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|26990820|ref|NP_746245.1| NADH dehydrogenase subunit I [Pseudomonas putida KT2440]
 gi|148546977|ref|YP_001267079.1| NADH dehydrogenase subunit I [Pseudomonas putida F1]
 gi|167034694|ref|YP_001669925.1| NADH dehydrogenase subunit I [Pseudomonas putida GB-1]
 gi|170721050|ref|YP_001748738.1| NADH dehydrogenase subunit I [Pseudomonas putida W619]
 gi|81733276|sp|Q88FH0|NUOI_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24985827|gb|AAN69709.1|AE016607_3 NADH dehydrogenase I, I subunit [Pseudomonas putida KT2440]
 gi|148511035|gb|ABQ77895.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida F1]
 gi|166861182|gb|ABY99589.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida GB-1]
 gi|169759053|gb|ACA72369.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida W619]
 gi|313498024|gb|ADR59390.1| NuoI [Pseudomonas putida BIRD-1]
          Length = 182

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|333028872|ref|ZP_08456936.1| putative Fe-S-cluster-containing hydrogenase, HybA [Streptomyces
           sp. Tu6071]
 gi|332748724|gb|EGJ79165.1| putative Fe-S-cluster-containing hydrogenase, HybA [Streptomyces
           sp. Tu6071]
          Length = 267

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 78  SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIE 129


>gi|332087441|gb|EGI92569.1| formate hydrogenlyase subunit 6 [Shigella boydii 5216-82]
          Length = 180

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|328869461|gb|EGG17839.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 213

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 19  EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           E  P+   + GE+ L  +P   + CI C +CE  CP  AI  + EP L+
Sbjct: 90  EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEPRLD 138


>gi|300114447|ref|YP_003761022.1| electron transport complex RnfABCDGE type subunit B [Nitrosococcus
           watsonii C-113]
 gi|299540384|gb|ADJ28701.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus watsonii C-113]
          Length = 209

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 16/100 (16%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ EN CI C  T C++ CPVD        L  +   EC  C +C   CPVD I+     
Sbjct: 106 VIDENRCIGC--TLCIQACPVDAILGAPKQLHTVITAECTGCELCVAPCPVDCIE----- 158

Query: 62  GLELWLKINSEYAT-QWPNITTKKESLPSAA--KMDGVKQ 98
                + +  E  T +WP   T    LP AA  + +G+ Q
Sbjct: 159 ----MVPVAPEPGTWKWPFPETTHPPLPIAAQKQREGIDQ 194


>gi|269966518|ref|ZP_06180601.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 40B]
 gi|269828862|gb|EEZ83113.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 40B]
          Length = 255

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|218782798|ref|YP_002434116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764182|gb|ACL06648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 361

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C V    EG++   + P+ CI CG+C   CP +AI    +P
Sbjct: 289 ERCQVRAIEEGDDAYRVKPEACIGCGLCVSTCPSEAISLIRKP 331


>gi|167044386|gb|ABZ09063.1| putative ABC transporter [uncultured marine crenarchaeote
          HF4000_APKG6D3]
          Length = 592

 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 16 DCVEVCPV-----DCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
          +C++ CPV     DC    E  N   I  D C  CG+C   CP +AI
Sbjct: 21 ECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67


>gi|126438164|ref|YP_001073855.1| formate dehydrogenase beta subunit [Mycobacterium sp. JLS]
 gi|126237964|gb|ABO01365.1| formate dehydrogenase beta subunit [Mycobacterium sp. JLS]
          Length = 300

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 121 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIE 172


>gi|108802182|ref|YP_642379.1| formate dehydrogenase beta subunit [Mycobacterium sp. MCS]
 gi|119871335|ref|YP_941287.1| formate dehydrogenase beta subunit [Mycobacterium sp. KMS]
 gi|108772601|gb|ABG11323.1| formate dehydrogenase beta subunit [Mycobacterium sp. MCS]
 gi|119697424|gb|ABL94497.1| formate dehydrogenase beta subunit [Mycobacterium sp. KMS]
          Length = 300

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 121 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIE 172


>gi|28210901|ref|NP_781845.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
 gi|28203340|gb|AAO35782.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
          Length = 295

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV ENC+ CK     EVC +      +  + I  D+C +CG+C  +C  + ++   E G+
Sbjct: 173 VVEENCVGCKICSVEEVCKIKACKAEDGKIKIDFDKCNNCGLCIDKCHFNGVELHKE-GV 231

Query: 64  ELWL 67
           ++++
Sbjct: 232 KVFV 235


>gi|57642010|ref|YP_184488.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160334|dbj|BAD86264.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 168

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
          NC  C+   C++VCP    Y + +  + I+P++CI C +C   CP
Sbjct: 47 NCRHCEKAPCMDVCPAGAIYRDSDGAVIINPNKCIGCLMCLAACP 91


>gi|320352571|ref|YP_004193910.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Desulfobulbus propionicus DSM 2032]
 gi|320121073|gb|ADW16619.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfobulbus propionicus DSM 2032]
          Length = 95

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + CI C   +C  VCP   F  EGE       D C++CG C   CPV A+     PG+  
Sbjct: 18 DRCIGCG--NCTVVCPHRIFALEGEKLKVGDRDLCMECGACARNCPVQALT--VTPGVGC 73

Query: 66 WLKINSEYATQWPNITTKKESLPS 89
           + I +     W N    ++ L  
Sbjct: 74 AVAILA----AWINRLLGRKLLSG 93


>gi|260778692|ref|ZP_05887584.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604856|gb|EEX31151.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 553

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           +++C LC    CV VCP    + +G++  L     +C+ CG+C   CP +A+
Sbjct: 417 SKDCTLC--MSCVAVCPSRALHTDGQSPSLKFVEQDCVQCGLCTKACPENAL 466


>gi|289829692|ref|ZP_06547233.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
          Length = 132

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 10 ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 67

Query: 57 --PDTEPG 62
            PD E G
Sbjct: 68 LTPDFELG 75


>gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           ++ E CI C    C+  C +D     EN  A  I  ++CI CGVC   CPV+A+
Sbjct: 529 ILEEKCINCGL--CLRKCRLDAIIR-ENHGAHRIQTEKCIQCGVCLDACPVNAV 579


>gi|332701478|ref|ZP_08421566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551627|gb|EGJ48671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 150

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C    CV  CP   F +     + +  + CI CG C   CPVDA+  D 
Sbjct: 54  CLACDPAPCVLACPTGAFSQRRGGGVVVKRELCIQCGKCAEACPVDAVYLDA 105


>gi|317490085|ref|ZP_07948574.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833846|ref|ZP_08166196.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
 gi|316910790|gb|EFV32410.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485204|gb|EGC87676.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
          Length = 219

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
           ++ ++ +C+ C+   C+ VCP      +    + ++PD CI C  C   CP
Sbjct: 96  SFFISTSCMHCEEPSCMRVCPAGAISKDAHGIVKVNPDVCIGCKYCFQACP 146


>gi|317471774|ref|ZP_07931113.1| electron transport complex [Anaerostipes sp. 3_2_56FAA]
 gi|316900751|gb|EFV22726.1| electron transport complex [Anaerostipes sp. 3_2_56FAA]
          Length = 438

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCP-------VDCFYEGENFLA---IHPDECIDCGVCEPECP 51
           NCI C    CV VCP       +    +  NF A   +H DEC++CG C   CP
Sbjct: 364 NCINCGR--CVSVCPQKLMPARLSVLADNNNFEAFEALHGDECVECGCCSFICP 415


>gi|325104451|ref|YP_004274105.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter
          saltans DSM 12145]
 gi|324973299|gb|ADY52283.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter
          saltans DSM 12145]
          Length = 117

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          DECI+CG CEPECP +AI    +P
Sbjct: 7  DECINCGACEPECPNNAIYDAGQP 30


>gi|309811972|ref|ZP_07705738.1| formate dehydrogenase-N subunit beta [Dermacoccus sp. Ellin185]
 gi|308434030|gb|EFP57896.1| formate dehydrogenase-N subunit beta [Dermacoccus sp. Ellin185]
          Length = 408

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ C  C H  C++ CP    +  E   + +  D C  CG C   CP   I+
Sbjct: 220 MASDVCKHCTHAGCLDNCPTGALFRTEFGTVVVQADVCNGCGYCVGGCPFGVIE 273


>gi|297527527|ref|YP_003669551.1| ABC transporter related protein [Staphylothermus hellenicus DSM
          12710]
 gi|297256443|gb|ADI32652.1| ABC transporter related protein [Staphylothermus hellenicus DSM
          12710]
          Length = 601

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          KH   +E+ P     +G++ + I+ D CI CG+C  +CP +AI
Sbjct: 31 KHKKAIELSP-----DGKHAV-IYEDICIGCGICVKKCPFNAI 67


>gi|256810830|ref|YP_003128199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256794030|gb|ACV24699.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 152

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C+  CP +     ++ + +  D+CI CG+C   CP  AI+ D
Sbjct: 47 CMHCDKNPCLYACPENAIERIDDKVVVIKDKCIGCGLCAIACPFGAIRID 96


>gi|257783995|ref|YP_003179212.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Atopobium parvulum DSM 20469]
 gi|257472502|gb|ACV50621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           parvulum DSM 20469]
          Length = 461

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C++VCP +C       + I  + C+ CG+C   CP +
Sbjct: 76  CLDVCPANCIDIHNQSVRIDDEACLQCGLCVAACPTE 112


>gi|163751796|ref|ZP_02159013.1| electron transport complex protein RnfB [Shewanella benthica KT99]
 gi|161328360|gb|EDP99520.1| electron transport complex protein RnfB [Shewanella benthica KT99]
          Length = 189

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAILGTGKLMHTVITDYCTGCDLCVEPCPVDCI 159


>gi|197121285|ref|YP_002133236.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171134|gb|ACG72107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 310

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++++ C  C+   C+E CP       E   + I PD C  CG C   CP   +    + G
Sbjct: 125 MMSDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVVDRREDDG 184


>gi|219850506|ref|YP_002464939.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219544765|gb|ACL26503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 318

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C+ C +  C  VCPV   Y  E+  +A+  ++CI C  C   CP  A
Sbjct: 154 CMQCDNPPCTSVCPVSATYTNEHGVVAVDYEQCIGCRACIAACPYGA 200


>gi|119720314|ref|YP_920809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525434|gb|ABL78806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 286

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECP 51
            C+ C    C   CPV       E  + I  +ECI CG CE  CP
Sbjct: 94  QCMHCATAPCSRACPVGAIKVTPEGAVVISKEECIGCGFCETACP 138


>gi|152985330|ref|YP_001350814.1| oxidoreductase FAD-binding region [Pseudomonas aeruginosa PA7]
 gi|150960488|gb|ABR82513.1| oxidoreductase, FAD-binding [Pseudomonas aeruginosa PA7]
          Length = 941

 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVIWRDIQAK 572


>gi|83310159|ref|YP_420423.1| ferredoxin [Magnetospirillum magneticum AMB-1]
 gi|82945000|dbj|BAE49864.1| Ferredoxin [Magnetospirillum magneticum AMB-1]
          Length = 99

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 11/83 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C + CP +   +GE    I P+ C +C        C   CPVD 
Sbjct: 1  MALLITDQCINCDV--CEQECPNEAITQGEEIFVIDPNRCTECVGHYDYPQCIEHCPVDC 58

Query: 55 I--KPDTEPGL-ELWLKINSEYA 74
          I   PD   GL EL +K     A
Sbjct: 59 IIVDPDRVEGLDELQVKYRDLMA 81


>gi|327191030|gb|EGE58084.1| putative NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           CNPAF512]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 67  KCVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|306819722|ref|ZP_07453382.1| iron-sulfur cluster-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552220|gb|EFM40151.1| iron-sulfur cluster-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 288

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
           CI+C    CV VCPV+ F   ++ + +   P  CI C  C   CP  A+K
Sbjct: 214 CIVC--GQCVSVCPVNMFVNLDSKVQMVRDPKHCILCAECYHHCPAKAVK 261


>gi|254786925|ref|YP_003074354.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
 gi|237685549|gb|ACR12813.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
          Length = 200

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD- 58
           + ++  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I+   
Sbjct: 114 VAFIREDECIGC--TKCIQACPVDAILGAAKQMHTVIGSECTGCDLCVEPCPVDCIEMRP 171

Query: 59  TEPGLELW 66
            + GL  W
Sbjct: 172 VQQGLAEW 179


>gi|283796610|ref|ZP_06345763.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
 gi|291076031|gb|EFE13395.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
          Length = 507

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT------- 59
           N I+ +   C   C +D  +   N  A I  D+C+ CG C   CP  AI   +       
Sbjct: 167 NAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCLVNCPFGAIADKSQIFQVIR 226

Query: 60  --EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
             + G  ++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 227 AIQSGERVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|160939954|ref|ZP_02087300.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437098|gb|EDP14864.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
          Length = 427

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGEN---FLAIHPDECIDCGVCEPECPVDAI 55
           +  + C+ C    C + CPV      EGEN      +  D C+ CGVC+  C V AI
Sbjct: 290 ITGDQCVGCGK--CAKTCPVLAISMEEGENGRKRAVVDKDICLGCGVCDRNCGVKAI 344


>gi|104782528|ref|YP_609026.1| NADH dehydrogenase subunit I [Pseudomonas entomophila L48]
 gi|123255480|sp|Q1I7Z3|NUOI_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|95111515|emb|CAK16235.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Pseudomonas entomophila L48]
          Length = 182

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  --PDTE 60
             PD E
Sbjct: 118 LTPDFE 123


>gi|23014022|ref|ZP_00053863.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 376

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 17  CVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C   CP         E    L+  P  CIDCG+C   CP  A+  D   G
Sbjct: 263 CAAHCPTQALQSWVGEAAEGLSFDPRSCIDCGLCVSACPGSALSFDRSAG 312


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C  + C  +CPV     E  +   I   +CI CG C   CP  AIK
Sbjct: 574 EACKGC--SKCSRICPVGAISGEIRHPFTIDTQKCIKCGACIANCPFHAIK 622


>gi|303257325|ref|ZP_07343339.1| dimethylsulfoxide reductase, chain B [Burkholderiales bacterium
           1_1_47]
 gi|302860816|gb|EFL83893.1| dimethylsulfoxide reductase, chain B [Burkholderiales bacterium
           1_1_47]
          Length = 201

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           Y V+  C  C    CV+VCP    ++   +  + I   +CI CG+C   CP
Sbjct: 61  YYVSLGCNHCSDPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACP 111


>gi|188588162|ref|YP_001921431.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498443|gb|ACD51579.1| hydrogenase [Clostridium botulinum E3 str. Alaska E43]
          Length = 565

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 18/69 (26%)

Query: 9   CILCKHTDCVEVC-------PVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDA 54
           CILC   DCV +C        +D  Y G N +        +   +C++CG C   CP  A
Sbjct: 146 CILC--GDCVRMCNEIQNVGAIDFAYRGSNMIVSPAFGKCLGETDCVNCGQCANVCPTGA 203

Query: 55  I--KPDTEP 61
           I  K D +P
Sbjct: 204 IVVKSDVKP 212


>gi|149378171|ref|ZP_01895888.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
 gi|149357533|gb|EDM46038.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
          Length = 192

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           +  +  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I   T
Sbjct: 108 VAVIREDECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCIDMIT 165

Query: 60  -EPGLELW 66
            EP +  W
Sbjct: 166 IEPDIRSW 173


>gi|121607727|ref|YP_995534.1| FAD/NAD(P)-binding oxidoreductase subunit [Verminephrobacter
          eiseniae EF01-2]
 gi|121552367|gb|ABM56516.1| benzoyl-CoA oxygenase, component A [Verminephrobacter eiseniae
          EF01-2]
          Length = 424

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+     E+   +  + C  C  C P CP  AI
Sbjct: 18 EICIRC--NTCEATCPVNAITHDEHNYVVRAELCNACLACIPPCPTGAI 64


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C  T C  VCPV+    E +    I  ++C+ CG C   CPV AI
Sbjct: 548 KCIGC--TKCARVCPVNAITGEIKKPHVIDAEKCVKCGACAEACPVKAI 594


>gi|297559006|ref|YP_003677980.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843454|gb|ADH65474.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 294

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP   I    E G  
Sbjct: 115 SDVCKHCTSAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDKREEDG-R 173

Query: 65  LW 66
           +W
Sbjct: 174 VW 175


>gi|240102324|ref|YP_002958632.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus gammatolerans EJ3]
 gi|239909877|gb|ACS32768.1| Ketoisovalerate oxidoreductase subunit vorD (vorD) [Thermococcus
           gammatolerans EJ3]
          Length = 105

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ E C+ C    C + CP    Y  E+ ++ I  D C  CG+C  ECP +AI  + E
Sbjct: 48  IIEEKCVKCYI--CWKFCPEPAIYIREDGYVGIDYDYCKGCGICANECPTNAITMEKE 103


>gi|254471603|ref|ZP_05085005.1| nitrate reductase beta chain [Pseudovibrio sp. JE062]
 gi|211959749|gb|EEA94947.1| nitrate reductase beta chain [Pseudovibrio sp. JE062]
          Length = 239

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   C+ VCPV+  F   E  + +  ++C+ CG C   CP +A
Sbjct: 87  LCNHCDEPPCIPVCPVNATFKTDEGAVVVDAEQCVACGYCVQACPYEA 134


>gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family
          [Desulfatibacillum alkenivorans AK-01]
 gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
          alkenivorans AK-01]
          Length = 317

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +   CI C+   CVEVCP +     +  + I    C  CG C  ECP  A++
Sbjct: 50 IGSRCIGCR--SCVEVCPHNALELTQEGMQIDRGLCEGCGRCADECPSTAME 99


>gi|159905591|ref|YP_001549253.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887084|gb|ABX02021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 252

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           NC++C      E+CPV      +  + +   +CI CG CE  CPV AI
Sbjct: 203 NCMVCS-----EICPVGAIVYEDGLMKLDDKKCIFCGKCEKNCPVTAI 245


>gi|56412592|ref|YP_149667.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361527|ref|YP_002141163.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56126849|gb|AAV76355.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093003|emb|CAR58436.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 209

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP DA
Sbjct: 70  FAYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYDA 125


>gi|73669074|ref|YP_305089.1| formate dehydrogenase subunit beta (F420) [Methanosarcina barkeri
           str. Fusaro]
 gi|72396236|gb|AAZ70509.1| formate dehydrogenase, beta subunit (F420) [Methanosarcina barkeri
           str. Fusaro]
          Length = 401

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 19/65 (29%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHP-------DECIDCGVCEP 48
           T  CI C    C+EVCP     +  +F           A H        D CI+CG CE 
Sbjct: 288 TSRCIKC--YTCIEVCPALSGTKVSDFTITPGKVPPSFAFHALRYSLVADSCINCGQCEE 345

Query: 49  ECPVD 53
            CP+D
Sbjct: 346 LCPMD 350


>gi|330834249|ref|YP_004408977.1| NADH dehydrogenase subunit I [Metallosphaera cuprina Ar-4]
 gi|329566388|gb|AEB94493.1| NADH dehydrogenase subunit I [Metallosphaera cuprina Ar-4]
          Length = 169

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +  + CI C  T C  VCP D       +G+   +I+   C+ C  C   CPVDA+K
Sbjct: 57  MIRLYKDVCIGC--TLCAMVCPADAMKMVTEQGKKLPSINYGRCVFCAFCVDICPVDALK 114


>gi|325261134|ref|ZP_08127872.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
 gi|324032588|gb|EGB93865.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
          Length = 860

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  C     VE CP+      +  + I  D+C  CG C  +CP   I+  T
Sbjct: 715 EKCRGCGTCQVVEGCPIKIAELADGKILIDDDKCNHCGRCVGKCPFKVIEKYT 767


>gi|320450082|ref|YP_004202178.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermus scotoductus SA-01]
 gi|320150251|gb|ADW21629.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermus scotoductus SA-01]
          Length = 258

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  +C+ C H  CV  CP       E   + +    CI C  C   CP +A+  D   G+
Sbjct: 74  IRGSCMHCTHAPCVASCPTGAMAHREGGVVTVDEKTCIGCRSCVQACPYEAVHFDEARGV 133


>gi|312880839|ref|ZP_07740639.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
          paucivorans DSM 12260]
 gi|310784130|gb|EFQ24528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
          paucivorans DSM 12260]
          Length = 57

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+ C+   CV VCP       +    ++ D C++CG C   CPV AI 
Sbjct: 9  DTCVGCEA--CVGVCPTSAISMEDGKAQVNADTCVECGACVATCPVSAIS 56


>gi|291280198|ref|YP_003497033.1| periplasmic nitrate reductase NapG [Deferribacter desulfuricans
           SSM1]
 gi|290754900|dbj|BAI81277.1| periplasmic nitrate reductase NapG [Deferribacter desulfuricans
           SSM1]
          Length = 253

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 27/123 (21%)

Query: 5   VTENCILCKHTDCVEVCPV-DCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP- 61
           VTE  +LC    C + CP+ D     E+F L +  DEC+ CGVC  +CP      +  P 
Sbjct: 127 VTEEGLLCSF--CYDSCPLRDRAIVMEHFILPVITDECVGCGVCTEKCPTTPKSVNIIPK 184

Query: 62  GLE---------LWLKINS---------EYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E           L+IN+         EY  +  +   KKE++ S     GVK +++  
Sbjct: 185 GMEQKELAGFYYRKLRINAQKKSSKIKEEYENKTESEVKKKENISSF----GVKPEFKNN 240

Query: 104 FSP 106
           F P
Sbjct: 241 FEP 243


>gi|160900868|ref|YP_001566450.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Delftia acidovorans SPH-1]
 gi|160366452|gb|ABX38065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
          acidovorans SPH-1]
          Length = 87

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|42526786|ref|NP_971884.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
 gi|41817101|gb|AAS11795.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
          Length = 493

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T  C  C    C+  CP            I  ++CI+CG+C   CP  A+
Sbjct: 112 YMITNACQACVARPCMMNCPKTAIAISGGRARIDEEKCINCGICLKNCPYHAV 164


>gi|71065390|ref|YP_264117.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
 gi|71038375|gb|AAZ18683.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
          Length = 280

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD     G++   I  D C  C +C   CPVD I
Sbjct: 123 DDCIGC--TKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCI 170


>gi|317485161|ref|ZP_07944043.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316923696|gb|EFV44900.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 70

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C+ C    CV++CP+D   EG+    I + ++C  C +C   CP  AI  DTE G
Sbjct: 8  AESCVNCGK--CVKICPLDVLREGKTTPEIVYREDCQSCFLCIIYCPKHAITVDTERG 63


>gi|294495923|ref|YP_003542416.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
           mahii DSM 5219]
 gi|292666922|gb|ADE36771.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
           mahii DSM 5219]
          Length = 341

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 17  CVEVCPVDCFYE-----GENF--LAIHPDECIDCGVCEPECPVDAI 55
           CV+VCP +  +      GE    +A  PD CI CG C   CPV AI
Sbjct: 182 CVDVCPCNALFNPDWEAGERVDKVAQRPDACIYCGACAVSCPVQAI 227



 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 15/80 (18%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEG-----------ENFLAIHPDECIDCGVCEPECPVD 53
          + E CI C    CV VCP +    G           + FL I P+ CI CG+C   CP  
Sbjct: 17 IPEKCIGCGT--CVMVCPKETLVIGSVGPVARGLIDKEFLEIRPNTCITCGMCSKVCPTG 74

Query: 54 AI--KPDTEPGLELWLKINS 71
          A+  + D +P  E    IN+
Sbjct: 75 ALEMREDGKPVEEKTYLINA 94


>gi|269961739|ref|ZP_06176099.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833522|gb|EEZ87621.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 255

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|262171465|ref|ZP_06039143.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
 gi|261892541|gb|EEY38527.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
          Length = 553

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462


>gi|258622882|ref|ZP_05717898.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
 gi|258584821|gb|EEW09554.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
          Length = 553

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462


>gi|257051788|ref|YP_003129621.1| NADH-quinone oxidoreductase, chain I [Halorhabdus utahensis DSM
          12940]
 gi|256690551|gb|ACV10888.1| NADH-quinone oxidoreductase, chain I [Halorhabdus utahensis DSM
          12940]
          Length = 153

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP D           GE +  +H  +CI C +CE  CP DAI
Sbjct: 45 ERCIWCRQ--CENVCPNDTIQIVMDDQRNGEQY-NLHVGQCIYCRLCEEVCPTDAI 97


>gi|224418322|ref|ZP_03656328.1| putative ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|253827643|ref|ZP_04870528.1| putative ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313141851|ref|ZP_07804044.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511049|gb|EES89708.1| putative ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313130882|gb|EFR48499.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 512

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 13  KH-TDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP--GLE 64
           KH T CV+ CP       +N   L   P +CI CG C   CP  +++ +  P  GLE
Sbjct: 170 KHCTKCVDACPTFGVGANDNLMELVFSPVDCIACGACVGVCPTSSLEYEELPKEGLE 226


>gi|220932674|ref|YP_002509582.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
 gi|219993984|gb|ACL70587.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
          Length = 287

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-TEPG 62
           V  E C  C+   CV+ C  +      + L + P+ C  CG C+  CP  AIK +  E G
Sbjct: 62  VDNEKCTGCRK--CVDFCQYNALALMADTLLVFPEICHSCGGCKLICPAGAIKEEKREVG 119

Query: 63  LELWLKINSE-YATQWPNITTKKESLPSAAKM 93
                KIN   Y  Q    T +++++P   K+
Sbjct: 120 KLREFKINDNLYFFQGELNTGEEQAVPVIEKL 151


>gi|149189646|ref|ZP_01867928.1| tetrathionate reductase, subunit B [Vibrio shilonii AK1]
 gi|148836458|gb|EDL53413.1| tetrathionate reductase, subunit B [Vibrio shilonii AK1]
          Length = 255

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA--IKPDT 59
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA  I  DT
Sbjct: 108 LCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINEDT 162


>gi|126460103|ref|YP_001056381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249824|gb|ABO08915.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 264

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
            C  C    C  VCPVD     E   + I  D+CI CG C   CP
Sbjct: 74  RCFHCYSAVCALVCPVDAHIVTEYGAVVIQTDKCIGCGRCAAVCP 118


>gi|262402197|ref|ZP_06078758.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297579085|ref|ZP_06941013.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
 gi|262350979|gb|EEZ00112.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297536679|gb|EFH75512.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
          Length = 553

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462


>gi|325833428|ref|ZP_08165877.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
 gi|325485352|gb|EGC87821.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
          Length = 341

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V   C+ C+   CV+ CP        +    I  ++CI CG+C   CP  A K
Sbjct: 179 VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGARK 231


>gi|295115323|emb|CBL36170.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SM4/1]
          Length = 507

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT------- 59
           N I+ +   C   C +D  +   N  A I  D+C+ CG C   CP  AI   +       
Sbjct: 167 NAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCLVNCPFGAIADKSQIFQVIR 226

Query: 60  --EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
             + G  ++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 227 AIQSGERVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis
           SH0165]
 gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone
           oxidoreductase, subunit RnfC [Haemophilus parasuis
           SH0165]
          Length = 666

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA----------IHPDECIDCGVCEPECP 51
           NCI C  + C + CPV    +   + A           H D CI+CGVC   CP
Sbjct: 378 NCIRC--SSCSDACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP 429


>gi|55378014|ref|YP_135864.1| molybdopterin oxidoreductase [Haloarcula marismortui ATCC 43049]
 gi|55230739|gb|AAV46158.1| molybdopterin oxidoreductase [Haloarcula marismortui ATCC 43049]
          Length = 276

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCPV+  Y   +  + I  D+CI C  C   CP +A
Sbjct: 71  CQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCIGCRYCMAACPYNA 117


>gi|311279455|ref|YP_003941686.1| tetrathionate reductase subunit B [Enterobacter cloacae SCF1]
 gi|308748650|gb|ADO48402.1| tetrathionate reductase subunit B [Enterobacter cloacae SCF1]
          Length = 249

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
           LC H D   CV VCPV   F   +  + I    C+ C  C   CP DA  I  DT+
Sbjct: 99  LCNHCDSPPCVPVCPVQATFQRKDGIVVIDNTRCVGCAYCVQACPYDARFINHDTQ 154


>gi|291460671|ref|ZP_06600061.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416630|gb|EFE90349.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 485

 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV  CP +             +   F  ++  ECI+CG C   CP  A 
Sbjct: 393 TTACINCGR--CVSACPENLMPTLMMQSALRKDTARFTKLYGMECIECGCCSYVCP--AK 448

Query: 56  KPDTEPGLELWLKINSE 72
           +P T+   E+  ++N+E
Sbjct: 449 RPLTQGFKEMKRRVNAE 465


>gi|18312508|ref|NP_559175.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|4099070|gb|AAD00534.1| putative molybdopterin oxidoreductase iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18159970|gb|AAL63357.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 214

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V + C  C++  CV+ CP    Y+ E+ L  ++ D CI CG C   CP  A
Sbjct: 82  VPKQCNHCENAPCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGA 132


>gi|332298379|ref|YP_004440301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
 gi|332181482|gb|AEE17170.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
          Length = 56

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    E  +   I    C+ CG C   CP +AI
Sbjct: 1  MAYKITDACVNCGS--CEGECPVGAISEDGDKRVIDAASCVSCGTCAAACPTEAI 53


>gi|302383058|ref|YP_003818881.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193686|gb|ADL01258.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 163

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI 
Sbjct: 62  ERCIACKL--CEAICPAQAITIESEPRSDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIV 119

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        NSE+AT+     T++E L   A++     ++E+  + N
Sbjct: 120 EGP----------NSEFATE-----TREELLYDKARLLDNGDRWERQIARN 155


>gi|150401260|ref|YP_001325026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013963|gb|ABR56414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 314

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 33  LAIHPDECIDCGVCEPECPVD 53
           ++I  D+C+DCG+CE  CP+D
Sbjct: 241 MSIDKDKCVDCGLCEKNCPMD 261


>gi|158523129|ref|YP_001530999.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511955|gb|ABW68922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 392

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y V  +  LC     CV  C ++ F   +    ++ D+CI CG+C   C   A+K
Sbjct: 294 YFVALDETLCNGCGKCVRRCQMNAFVVKDKMAVLNIDKCIGCGLCVTTCKTGALK 348


>gi|117619673|ref|YP_857013.1| hydrogenase-4 component A [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|117561080|gb|ABK38028.1| hydrogenase-4 component A [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 221

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+H D   C +VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 49 VQCRHCDDAPCSKVCPVEAIRQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|315924362|ref|ZP_07920584.1| isoquinoline 1-oxidoreductase, alpha subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622241|gb|EFV02200.1| isoquinoline 1-oxidoreductase, alpha subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 591

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + CI CK   C+   CP   F   E+      + C+ CGVC   CPVDAI
Sbjct: 537 VLMDKCIGCKQ--CIGTGCPALEFGRIEDQKMTITNACVGCGVCGQVCPVDAI 587


>gi|313887323|ref|ZP_07821014.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|312923242|gb|EFR34060.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
          PR426713P-I]
          Length = 393

 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 12 CKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C    C ++CP  C       EG ++  +  D CI+C  CE  CP   +    +P
Sbjct: 11 CGCEACRQICPKGCIRLERDEEGFDYPIVDTDRCIECHKCERVCPFMKLDEPRKP 65


>gi|224369477|ref|YP_002603641.1| RnfB [Desulfobacterium autotrophicum HRM2]
 gi|223692194|gb|ACN15477.1| RnfB [Desulfobacterium autotrophicum HRM2]
          Length = 273

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           DCVE C  D  +  +    ++ D CI CG C   CP   I
Sbjct: 147 DCVEACKYDAIHVEDGLAVVNYDHCIGCGACVKACPRSII 186


>gi|218782860|ref|YP_002434178.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764244|gb|ACL06710.1| Indolepyruvate ferredoxin oxidoreductase, alpha/beta subunit
           [Desulfatibacillum alkenivorans AK-01]
          Length = 617

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 12  CK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CK H  CV+       Y   N +AI+ ++CI C VC   CP  AI P
Sbjct: 568 CKDHRLCVDALGCPAMYVENNKVAINAEQCIGCAVCAQVCPEHAIVP 614


>gi|153809516|ref|ZP_01962184.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
 gi|149127824|gb|EDM19047.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
          Length = 489

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + Y +T  C  C    C   CP D     +N  A I  + CI CG+C   CP  AI
Sbjct: 112 INYEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHETCISCGICHKSCPYHAI 167


>gi|50120186|ref|YP_049353.1| hydrogenase-4 component A [Pectobacterium atrosepticum SCRI1043]
 gi|49610712|emb|CAG74157.1| hydrogenase-4 component A [Pectobacterium atrosepticum SCRI1043]
          Length = 206

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 1   MTYVVTEN------CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +T V TE+      C  C+   C  VCPV+        + ++   CI C +C   CP  A
Sbjct: 37  LTVVKTEDKTAPLMCRQCEDAPCARVCPVNAITHENAAIVLNESLCIGCKLCGLVCPFGA 96

Query: 55  IKPD 58
           I P 
Sbjct: 97  ITPS 100


>gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
 gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
          Length = 299

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C   G            +  I+   CI CG+CE  CP  AI+
Sbjct: 64  ERCVACYL--CAAACPVSCISMGGAEREDGRRWATWFRINFARCIYCGLCEEACPTLAIQ 121


>gi|283780218|ref|YP_003370973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283438671|gb|ADB17113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 175

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 13/59 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-----------NFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C + CPVDC Y G+              AI   +C+ C +C   CPVD I
Sbjct: 64  TCIACDQ--CAKACPVDCIYIGKERVEGSKGFKITGFAIDYSKCMFCALCVEPCPVDCI 120


>gi|254517630|ref|ZP_05129686.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
 gi|226911379|gb|EEH96580.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
          Length = 496

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C E C             I+ + C +CG+C+  CP DAI     P
Sbjct: 105 YSVTDSCRNCLAHKCHEACNFGAITYVAGRAYINQELCKECGMCKKACPYDAIAEVMRP 163


>gi|16130627|ref|NP_417200.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89109507|ref|AP_003287.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082296|ref|YP_001731616.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238901857|ref|YP_002927653.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BW2952]
 gi|256024773|ref|ZP_05438638.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia sp.
           4_1_40B]
 gi|300947002|ref|ZP_07161228.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|300954960|ref|ZP_07167372.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|301027397|ref|ZP_07190736.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|301645300|ref|ZP_07245250.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|307139407|ref|ZP_07498763.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           H736]
 gi|331643404|ref|ZP_08344535.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H736]
 gi|123920|sp|P16432|HYCF_ECOLI RecName: Full=Formate hydrogenlyase subunit 6; Short=FHL subunit 6;
           AltName: Full=Hydrogenase-3 component F
 gi|41685|emb|CAA35551.1| hycF [Escherichia coli]
 gi|882613|gb|AAA69230.1| formate hydrogenlyase subunit 6 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85675541|dbj|BAE76797.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K12 substr. W3110]
 gi|169890131|gb|ACB03838.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238861136|gb|ACR63134.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BW2952]
 gi|260448230|gb|ACX38652.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|299879311|gb|EFI87522.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|300318095|gb|EFJ67879.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|300453389|gb|EFK17009.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|301076418|gb|EFK91224.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|315137327|dbj|BAJ44486.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           DH1]
 gi|315615108|gb|EFU95745.1| formate hydrogenlyase subunit 6 [Escherichia coli 3431]
 gi|331036875|gb|EGI09099.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H736]
 gi|1093499|prf||2104213F hycF gene
          Length = 180

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|320169962|gb|EFW46861.1| ATP-binding cassette sub-family E member 1 [Capsaspora owczarzaki
          ATCC 30864]
          Length = 602

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+EV P D          I  + CI CG+C  +CP +AI
Sbjct: 40 CIEVAPTD------KISYISEELCIGCGICVKKCPFEAI 72


>gi|317056952|ref|YP_004105419.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
 gi|315449221|gb|ADU22785.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
          Length = 205

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++CI C    C+  CP  C  E      I  + C+ CG C   CPV A+
Sbjct: 153 YFVNDDCIGCG--SCLSACPQSCI-ELNGKAVIRQENCLHCGNCAEVCPVGAV 202


>gi|294141483|ref|YP_003557461.1| hypothetical protein SVI_2712 [Shewanella violacea DSS12]
 gi|293327952|dbj|BAJ02683.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 683

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 12  CKHTD---CVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           C H D   C++ CP   + +   + A+   P+ C  CG C   CP +A  P  +P
Sbjct: 158 CNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNA--PQLDP 210


>gi|257063349|ref|YP_003143021.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791002|gb|ACV21672.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C  CK+  CV+VCP    +  EN  + I  D+CI C  C   CP      + E 
Sbjct: 58  YYLPISCQHCKNPACVDVCPTGASHRTENGTVQIDHDKCIGCQFCVMACPYGVRYLNEEE 117

Query: 62  GL 63
           G+
Sbjct: 118 GV 119


>gi|197335878|ref|YP_002156366.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio fischeri MJ11]
 gi|197317368|gb|ACH66815.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio fischeri MJ11]
          Length = 228

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENAPCVMVCPTGAAYKDETTGIVDVHNEKCVGCGYCLVACP 143


>gi|190893221|ref|YP_001979763.1| NADH-ubiquinone oxidoreductase [Rhizobium etli CIAT 652]
 gi|190698500|gb|ACE92585.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           CIAT 652]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 67  KCVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|149191081|ref|ZP_01869341.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           shilonii AK1]
 gi|148835109|gb|EDL52086.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           shilonii AK1]
          Length = 228

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP  V    P+T 
Sbjct: 97  DSCQHCENPPCVYVCPTGAAYKDEETGIIDVHNEKCVGCGYCLAACPYQVRFFNPETR 154


>gi|187924671|ref|YP_001896313.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phytofirmans PsJN]
 gi|187715865|gb|ACD17089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phytofirmans PsJN]
          Length = 413

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CPVD     +N   +  + C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEETCPVDAITHDDNNYVVKAEICNGCMACVPPCPTGAI 64


>gi|16263279|ref|NP_436072.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium
           meliloti 1021]
 gi|81774724|sp|Q92YN8|NUOI2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|14523955|gb|AAK65484.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium
           meliloti 1021]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 67  KCVACEL--CARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|226946334|ref|YP_002801407.1| Fe-S/FAD domain-containing protein [Azotobacter vinelandii DJ]
 gi|226721261|gb|ACO80432.1| Fe-S/FAD domain protein [Azotobacter vinelandii DJ]
          Length = 938

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           D+CI+CG CEP CP   +       + +W  I +
Sbjct: 538 DKCIECGFCEPVCPSRGLTLTPRQRIVMWRDIQA 571


>gi|317054472|ref|YP_004118497.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pantoea sp. At-9b]
 gi|316952467|gb|ADU71941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp.
           At-9b]
          Length = 201

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           LC+H +   C  VCPV+     +  + ++ + C+ C +C   CP  AI+      L +  
Sbjct: 50  LCRHCEDAPCASVCPVNAITRVDGAVQLNANLCVSCKLCGIACPFGAIEFSGSRPLHIPA 109

Query: 68  KINS 71
            +N+
Sbjct: 110 DVNT 113


>gi|307304402|ref|ZP_07584153.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
 gi|307318109|ref|ZP_07597545.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306896150|gb|EFN26900.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306902604|gb|EFN33198.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
            C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 67  KCVACEL--CARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|301062896|ref|ZP_07203479.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300443013|gb|EFK07195.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 649

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 35  IHPDECIDCGVCEPECPV 52
           + P +CI CGVCE ECP+
Sbjct: 607 VDPKQCIGCGVCEHECPI 624


>gi|251789756|ref|YP_003004477.1| RnfABCDGE type electron transport complex subunit B [Dickeya zeae
           Ech1591]
 gi|247538377|gb|ACT06998.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya zeae
           Ech1591]
          Length = 196

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 VAWIDEENCIGC--TKCIQACPVDAIIGSTRAVHTVIRDLCTGCNLCVAPCPTDCIE 162


>gi|218886034|ref|YP_002435355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756988|gb|ACL07887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 195

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C++  C+  CPV  + + E+ + +H  D CI CG C   CP  A  P   P L+
Sbjct: 66  CNHCENPACLNACPVKAYEKREDGVVVHHQDRCIGCGNCIRSCPYGA--PRYNPVLK 120


>gi|167623860|ref|YP_001674154.1| electron transport complex protein RnfB [Shewanella halifaxensis
           HAW-EB4]
 gi|167353882|gb|ABZ76495.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAFIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|281355829|ref|ZP_06242323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
 gi|281318709|gb|EFB02729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
          Length = 57

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C  C+   CV  CPV      +   +++  +C+DCG C   CPV+AI
Sbjct: 8  EKCTGCET--CVGECPVSAISMVDGKASVNAGDCVDCGACTGACPVEAI 54


>gi|149238245|ref|XP_001524999.1| methionyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451596|gb|EDK45852.1| methionyl-tRNA synthetase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 755

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 17/83 (20%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIKPDTEPGLELWLKINSE 72
           +CP  C YE         D+C  CG       + EP C VD  KP  +P   ++LK+N E
Sbjct: 331 ICP-KCGYEDA-----RGDQCDKCGQLLDPLELIEPRCKVDGTKPIVKPSTHIYLKLN-E 383

Query: 73  YAT---QWPNITTKKESLPSAAK 92
             T   +W +I+++K +    +K
Sbjct: 384 LETPLKEWVDISSEKGAWSKNSK 406


>gi|153000588|ref|YP_001366269.1| electron transport complex protein RnfB [Shewanella baltica OS185]
 gi|160875224|ref|YP_001554540.1| electron transport complex protein RnfB [Shewanella baltica OS195]
 gi|217973445|ref|YP_002358196.1| electron transport complex protein RnfB [Shewanella baltica OS223]
 gi|304408662|ref|ZP_07390283.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|307305491|ref|ZP_07585239.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|151365206|gb|ABS08206.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS185]
 gi|160860746|gb|ABX49280.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS195]
 gi|217498580|gb|ACK46773.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS223]
 gi|304352483|gb|EFM16880.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|306911794|gb|EFN42219.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|315267417|gb|ADT94270.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS678]
          Length = 204

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK--P 57
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I   P
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIP 163

Query: 58  DTEPGLELW 66
            T P L+ W
Sbjct: 164 VT-PNLKNW 171


>gi|15642809|ref|NP_227850.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170288707|ref|YP_001738945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga sp. RQ2]
 gi|281412096|ref|YP_003346175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
 gi|4980519|gb|AAD35128.1|AE001691_2 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170176210|gb|ACB09262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           sp. RQ2]
 gi|281373199|gb|ADA66761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
          Length = 357

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YVV E C+ C    C + CPV           I  ++CI CG C   C   A+ P  +  
Sbjct: 189 YVVEEKCVAC--GTCAKFCPVGAITV-TKVAKIDYEKCIGCGQCIAMCSYGAMSPKWDSS 245

Query: 63  LELWLKINSEYA 74
            +   K  +EYA
Sbjct: 246 TDSLSKKMAEYA 257


>gi|307822858|ref|ZP_07653089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylobacter tundripaludum SV96]
 gi|307736462|gb|EFO07308.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylobacter tundripaludum SV96]
          Length = 76

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 33 LAIHPDECIDCGVCEPECPVDAI 55
          L I+ D+C  CGVCEPECP +AI
Sbjct: 3  LVINEDKCARCGVCEPECPNEAI 25


>gi|302343450|ref|YP_003807979.1| hypothetical protein Deba_2020 [Desulfarculus baarsii DSM 2075]
 gi|301640063|gb|ADK85385.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
          Length = 372

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C+ C++  C  +CP      EG   + I  D C+    C+  CP     P  + G+
Sbjct: 120 IPRRCMHCRNAPCANLCPFGAARVEGNGVVHIDGDLCLGGAKCKNVCPWKI--PQRQSGV 177

Query: 64  ELWLKINSEYA 74
            L+L +  EYA
Sbjct: 178 GLYLHLLPEYA 188


>gi|289193023|ref|YP_003458964.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus sp.
           FS406-22]
 gi|288939473|gb|ADC70228.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus sp.
           FS406-22]
          Length = 269

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y + ENC+ C    C+++C  D     E+F  I+P  C  CG CE  C  +AI+P
Sbjct: 63  YKINENCVKC--GKCLDICQFDAI---EDF-KINPILCEGCGACELICEFNAIEP 111


>gi|215488036|ref|YP_002330467.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266108|emb|CAS10533.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 180

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFNLGRCIFCGRCEEVCPTVAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|170745492|ref|YP_001766949.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659093|gb|ACB28147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 931

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + C+    CE  CP
Sbjct: 756 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCP 799


>gi|167534830|ref|XP_001749090.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772514|gb|EDQ86165.1| predicted protein [Monosiga brevicollis MX1]
          Length = 204

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 18  VEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
            E  P+   + GE+ L  +P   + CI C +CE  CP  AI  +TEP
Sbjct: 80  FEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIETEP 126


>gi|197123120|ref|YP_002135071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172969|gb|ACG73942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 491

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C+ C+   C   CP    Y   N  + +  D CI CG C   CP  A
Sbjct: 60  CMQCEAHPCTVDCPSGATYVDANGVVVVDADVCIGCGTCVAACPYGA 106


>gi|118594444|ref|ZP_01551791.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
 gi|118440222|gb|EAV46849.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
          Length = 188

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  +  + CI C  T C++ CPVD      ++   I   EC  C +C P CPVD I
Sbjct: 105 IAIIDEDTCIGC--TLCIQACPVDAILGSAKHMHTIIEKECTGCELCLPPCPVDCI 158


>gi|78357433|ref|YP_388882.1| dissimilatory sulfite reductase subunit alpha and beta-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219838|gb|ABB39187.1| Dissimilatory sulfite reductase (desulfoviridin) alpha and beta
           subunits-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 215

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL----WLKINSE 72
           C   CP D    G    A  P  CIDCG C   CP  A+    + GL +     L     
Sbjct: 103 CAAACPDDAIDMGSGVPAFDPLRCIDCGQCLLRCPEKALSCRRQ-GLRVIAGGRLGRRPR 161

Query: 73  YATQWPNITTKKESL 87
            AT  P +     +L
Sbjct: 162 LATPLPGVYDGASAL 176


>gi|95928880|ref|ZP_01311626.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans
          DSM 684]
 gi|95135225|gb|EAT16878.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans
          DSM 684]
          Length = 326

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + TE C  C    CV  CPV+ F      E      ++P  C  C  C  +CP +AI+
Sbjct: 6  IATEQCTGCGM--CVNFCPVEVFQLETSGEKNTVKVVNPSACWACDTCVGQCPTNAIR 61


>gi|319795633|ref|YP_004157273.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Variovorax
          paradoxus EPS]
 gi|315598096|gb|ADU39162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Variovorax
          paradoxus EPS]
          Length = 94

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 4  DECINCDVCEPECPNDAI 21


>gi|312796966|ref|YP_004029888.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312168741|emb|CBW75744.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 355

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++ CPVD        L  +  D C  C +C   CPVD I+
Sbjct: 119 CIGC--TLCMQACPVDAIVGAPKQLHTVLADWCTGCDLCVAPCPVDCIE 165


>gi|307720609|ref|YP_003891749.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Sulfurimonas autotrophica DSM 16294]
 gi|306978702|gb|ADN08737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sulfurimonas autotrophica DSM 16294]
          Length = 83

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M  ++ + CI C    C E CP     EG+    I PD C +C G+     C   CPVD 
Sbjct: 1  MALIINDECIACDA--CREECPTLAIEEGDPIYYIDPDRCTECVGIYDEPACISVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDKD 64


>gi|296387989|ref|ZP_06877464.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAb1]
          Length = 656

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 9   CILCKHTDCVEVCPVDC------FY----EGENFLAIHPDECIDCGVCEPECP 51
           CI C   DC  VCPV        F+    E E  LA +  +CI+CG C   CP
Sbjct: 369 CIRCG--DCARVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|295092507|emb|CBK78614.1| Iron only hydrogenase large subunit, C-terminal domain [Clostridium
           cf. saccharolyticum K10]
          Length = 507

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 13/105 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT------- 59
           N I+ +   C   C +D  +   N  A I  D+C+ CG C   CP  AI   +       
Sbjct: 167 NAIIIQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCLVNCPFGAIADKSQIFQVIR 226

Query: 60  --EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
             + G  ++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 227 AIQSGERVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|159905253|ref|YP_001548915.1| glutamate synthase (NADPH) [Methanococcus maripaludis C6]
 gi|159886746|gb|ABX01683.1| Glutamate synthase (NADPH) [Methanococcus maripaludis C6]
          Length = 510

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +V  E C+LC+   C   C    +    N +  +P+ C  C  C   CP DAI
Sbjct: 13 FVDPERCMLCER--CTTECSWGVYRRQGNKILTYPNRCGACLRCVSNCPRDAI 63


>gi|116750829|ref|YP_847516.1| cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699893|gb|ABK19081.1| Cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 292

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  +C  D   EGE    + P  C  C VC   CP +AI+
Sbjct: 74  CASLCRFDAIREGERGYTVDPIRCEGCKVCVAFCPAEAIR 113


>gi|53728930|ref|ZP_00134519.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209139|ref|YP_001054364.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae L20]
 gi|126097931|gb|ABN74759.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 205

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++  + F+ ++   CI C  C   CP DA +   
Sbjct: 59  FAYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQYSA 118

Query: 60  EPG 62
             G
Sbjct: 119 SKG 121


>gi|322709044|gb|EFZ00621.1| translation initiation factor RLI1 [Metarhizium anisopliae ARSEF
           23]
          Length = 852

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 8/40 (20%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           C+EV P       E+ LA I    CI CG+C  +CP DAI
Sbjct: 222 CIEVTP-------ESRLAFISESLCIGCGICPKKCPFDAI 254


>gi|260598003|ref|YP_003210574.1| anaerobic dimethyl sulfoxide reductase subunit B [Cronobacter
           turicensis z3032]
 gi|260217180|emb|CBA31029.1| Anaerobic dimethyl sulfoxide reductase chain B [Cronobacter
           turicensis z3032]
          Length = 205

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C+   C +VCP    ++ E+ F+ ++ D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
             G
Sbjct: 119 AKG 121


>gi|297568183|ref|YP_003689527.1| Electron-transferring-flavoprotein dehydrogenase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924098|gb|ADH84908.1| Electron-transferring-flavoprotein dehydrogenase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 556

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++C+   +  C+  CP   + + G      +P  C+ C  C+ +CP D I+
Sbjct: 491 DHCLAKFNAPCITFCPAGVYEKIGPQPRPANPSNCLHCKTCQRKCPFDNIR 541


>gi|51893469|ref|YP_076160.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857158|dbj|BAD41316.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 198

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y  + +C  C    CV VCP    Y+  +   + ++ D+C+ C  C   CP DA + + 
Sbjct: 58  SYWFSISCNHCADPACVYVCPTGAMYKRSDNGLVLVNQDDCVGCQSCVWACPYDAPQYNP 117

Query: 60  EPG 62
           E G
Sbjct: 118 EVG 120


>gi|109898597|ref|YP_661852.1| FAD linked oxidase-like [Pseudoalteromonas atlantica T6c]
 gi|109700878|gb|ABG40798.1| FAD linked oxidase-like protein [Pseudoalteromonas atlantica T6c]
          Length = 949

 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           D+CI+CG CE  CP  A+       + +W +I
Sbjct: 539 DKCIECGFCEAVCPSQALSYTPRQRIAIWRRI 570


>gi|124267483|ref|YP_001021487.1| putative electron transport-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260258|gb|ABM95252.1| putative electron transport-related protein [Methylibium
           petroleiphilum PM1]
          Length = 228

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++ CPVDC     +    +   +C  C +C P CPVD I 
Sbjct: 98  CIGC--TLCIKACPVDCIVGAAKQMHTVVESQCTGCELCIPVCPVDCIS 144


>gi|305662559|ref|YP_003858847.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
 gi|304377128|gb|ADM26967.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
          Length = 608

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 17 CVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+  CP+         +   E +    I+ D+CI CG+C  +CP  AI+
Sbjct: 24 CIRFCPINKTKPYKAIEISSEKKGKPIIYEDKCIACGICIKKCPFKAIR 72


>gi|296135781|ref|YP_003643023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295795903|gb|ADG30693.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 275

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+ +    + +  D+CI C  C   CP  A + D + G+
Sbjct: 71  KSCLHCEEPPCVPVCPTGASYKRQEDGIVLVDSDKCIGCKYCSWACPYGAREYDEDRGV 129


>gi|240102306|ref|YP_002958614.1| formate dehydrogenase I subunit B (fdh1B) [Thermococcus
          gammatolerans EJ3]
 gi|239909859|gb|ACS32750.1| formate dehydrogenase I subunit B (fdh1B) [Thermococcus
          gammatolerans EJ3]
          Length = 165

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + V  NC  C+   C+ VCP    F + +  +A  P +CI C +C   CP    K D E
Sbjct: 40 FTVPFNCRHCEKAPCLNVCPTGALFRDKDGAVAFDPLKCIGCLMCAVACPFGVPKLDEE 98


>gi|261342162|ref|ZP_05970020.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315495|gb|EFC54433.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC
           35316]
          Length = 180

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AI+   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVEIDLKSGELAWQFNLGRCIFCGRCEEVCPTAAIRLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|226327802|ref|ZP_03803320.1| hypothetical protein PROPEN_01679 [Proteus penneri ATCC 35198]
 gi|225203506|gb|EEG85860.1| hypothetical protein PROPEN_01679 [Proteus penneri ATCC 35198]
          Length = 247

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   F   +  + +  + C+ C  C   CP DA
Sbjct: 99  LCNHCDEPPCVPVCPVQATFQRKDGIVVVDNERCVGCAYCVQACPYDA 146


>gi|218261084|ref|ZP_03476043.1| hypothetical protein PRABACTJOHN_01707 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224231|gb|EEC96881.1| hypothetical protein PRABACTJOHN_01707 [Parabacteroides johnsonii
           DSM 18315]
          Length = 516

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDCF----YEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CP        Y+G      I+PD CI CG CE  CPV  ++
Sbjct: 441 CAEHCPTQAVHMVPYKGTLTIPQINPDLCIGCGGCESICPVRPMR 485


>gi|254421090|ref|ZP_05034814.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
 gi|196187267|gb|EDX82243.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
          Length = 163

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI 
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAIV 119

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        NSEYA     + T++E L   A++     ++E+  + N
Sbjct: 120 EGP----------NSEYA-----VETREELLFDKARLLDNGDRWERQIAKN 155


>gi|170724604|ref|YP_001758630.1| dimethylsulfoxide reductase subunit B [Shewanella woodyi ATCC
           51908]
 gi|169809951|gb|ACA84535.1| dimethylsulfoxide reductase, chain B [Shewanella woodyi ATCC 51908]
          Length = 225

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
             Y ++  C  C    CV+ CP    ++      +H   D CI C  C   CP DA + D
Sbjct: 77  FAYYMSIGCNHCSEPVCVKACPTGAMHKRRQDGLVHVAQDLCIGCESCARACPYDAPQID 136

Query: 59  TE 60
           +E
Sbjct: 137 SE 138


>gi|33592565|ref|NP_880209.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama
           I]
 gi|33572211|emb|CAE41759.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama
           I]
 gi|332381983|gb|AEE66830.1| putative iron-sulfur binding protein [Bordetella pertussis CS]
          Length = 696

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V ++ C LC    CV  CP +   +      L +    C+ CG+C   CP +AI
Sbjct: 562 VDSDACTLC--MSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAI 613


>gi|319902323|ref|YP_004162051.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417354|gb|ADV44465.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
          Length = 320

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP D I
Sbjct: 218 TVACIGCGK--CVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQDTI 265


>gi|304314067|ref|YP_003849214.1| carbon monoxide dehydrogenase, iron sulfur subunit
          [Methanothermobacter marburgensis str. Marburg]
 gi|302587526|gb|ADL57901.1| carbon monoxide dehydrogenase, iron sulfur subunit
          [Methanothermobacter marburgensis str. Marburg]
          Length = 154

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 21/44 (47%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  +CPV    E +  L I  D CI C +C   CP   I  D+E
Sbjct: 49 CARICPVGAIREVDGALVIDEDACILCKLCMVACPAGMIVLDSE 92


>gi|260597687|ref|YP_003210258.1| formate hydrogenlyase subunit 2 [Cronobacter turicensis z3032]
 gi|260216864|emb|CBA30397.1| Formate hydrogenlyase subunit 2 [Cronobacter turicensis z3032]
          Length = 243

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+        + ++   C+ C +C   CP  AI+      L +   
Sbjct: 93  CHHCEDAPCAQVCPVNAITREAGAIQLNESLCVSCKLCGIACPFGAIEFSGSRPLHIPAN 152

Query: 69  INS 71
           +NS
Sbjct: 153 VNS 155


>gi|258624435|ref|ZP_05719382.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM603]
 gi|258583282|gb|EEW08084.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM603]
          Length = 212

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y  E    + +H + C+ CG C   CP
Sbjct: 81  KSCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCLAACP 127


>gi|218662859|ref|ZP_03518789.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli IE4771]
          Length = 165

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 8  NCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 44 KCVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 99


>gi|220904268|ref|YP_002479580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868567|gb|ACL48902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 366

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++CI C    CV  CP       ++   +    CI C  C   CP  AI  D    +E +
Sbjct: 193 DDCIGC--AKCVHSCPQQALSMRDHKSHVETARCIGCFECMTVCPAKAIVIDWATEMEPF 250

Query: 67  LKINSEYA 74
           ++  +EYA
Sbjct: 251 MERMTEYA 258


>gi|218193826|gb|EEC76253.1| hypothetical protein OsI_13702 [Oryza sativa Indica Group]
          Length = 261

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 7   ENCILCKHTDCV------EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKP 57
           E CI CK  + V      E  P+   + GE+ L  +P   + CI C +CE  CP  AI  
Sbjct: 120 ERCIACKLCEAVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITI 179

Query: 58  DTE 60
           + E
Sbjct: 180 EAE 182


>gi|53804899|ref|YP_113273.1| putative glutamate synthase (NADPH) small subunit [Methylococcus
           capsulatus str. Bath]
 gi|53758660|gb|AAU92951.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Methylococcus capsulatus str. Bath]
          Length = 546

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           NC  C    C   CP     +   G+ +   + D C  C VC  +CP  AI+  +EPG
Sbjct: 491 NCFECD--GCYGACPEQAIVKLGPGKRYRYDY-DRCTGCAVCHEQCPAHAIEMISEPG 545


>gi|331268324|ref|YP_004394816.1| hydrogenase [Clostridium botulinum BKT015925]
 gi|329124874|gb|AEB74819.1| hydrogenase [Clostridium botulinum BKT015925]
          Length = 448

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 15  TDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKIN 70
           T C + CP D     +  N   I  D+C DCG C   CP  +I    E  P ++L  K  
Sbjct: 92  TLCQKSCPFDAILVDKNTNSTYISLDKCTDCGFCVNACPTGSILDKIEFIPLIDLLNKEE 151

Query: 71  SEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
           +  A   P+I  +      A  M+ ++  ++K
Sbjct: 152 TVIAAVAPSIIGQ---FGDAVTMNQLRSAFKK 180


>gi|330807454|ref|YP_004351916.1| oxidoreductase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375562|gb|AEA66912.1| Putative oxidoreductase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 955

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI+CG CEP CP   +       + +W  I ++
Sbjct: 538 DKCIECGFCEPVCPSKDLTLSPRQRIVIWRDIQAK 572


>gi|317055057|ref|YP_004103524.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Ruminococcus albus 7]
 gi|315447326|gb|ADU20890.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 7]
          Length = 603

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TE CI C+    +  CP     +G+  +AI    C  CG+C   CPV+AI
Sbjct: 549 TEKCINCQKCKNLLGCPGLVLRDGK--IAIEESLCTGCGLCAQVCPVNAI 596


>gi|262165720|ref|ZP_06033457.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
 gi|262025436|gb|EEY44104.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
          Length = 553

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462


>gi|239908207|ref|YP_002954948.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798073|dbj|BAH77062.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 375

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C   +CV VCPV           I    CI CG C   CP  A+  D    +
Sbjct: 197 VEPKKCIGC--AECVAVCPVGAATMQGKKAVIDKATCIGCGECLTVCPKKAMSIDWRTEI 254

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 255 VPFMERMVEYA 265


>gi|219109553|ref|XP_002176531.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411066|gb|EEC50994.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 584

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%)

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           C+  CP +A       G   WL+++S   +     T K E  P ++K      K  K  +
Sbjct: 192 CKGSCPPEATAFTGNAGTRRWLELHSSSNSSKVECTKKSEPKPKSSKTIAPNPKASKTSA 251

Query: 106 PNPGGKNT 113
           PNP    T
Sbjct: 252 PNPKSSKT 259


>gi|153953474|ref|YP_001394239.1| hypothetical protein CKL_0840 [Clostridium kluyveri DSM 555]
 gi|219854096|ref|YP_002471218.1| hypothetical protein CKR_0753 [Clostridium kluyveri NBRC 12016]
 gi|146346355|gb|EDK32891.1| Hypothetical protein CKL_0840 [Clostridium kluyveri DSM 555]
 gi|219567820|dbj|BAH05804.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 178

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           I C+H     CV VCPV    E    + +  D+CI C  C   C V A+
Sbjct: 62  IQCRHCTEAFCVNVCPVKAIVENHGSIFVQEDKCIGCKNCMLVCAVGAV 110


>gi|119094136|gb|ABL60966.1| iron-sulfur cluster-binding protein [uncultured marine bacterium
           HF10_19P19]
          Length = 669

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 11  LCKHTD--------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           LC H+         C++VCP        + +AI P  C  CG+C   CP  A +    P
Sbjct: 279 LCAHSRNSLTGCSRCLDVCPAGAIVVAGDHVAIDPAVCGGCGMCGAVCPSGAAQTAFPP 337



 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           T+ C +C    CV  CP     +  +   L    D C+ CG+C   CP   I
Sbjct: 524 TDKCTIC--LSCVGACPAGALQDNPDAPQLLFREDACLQCGICVATCPEKVI 573


>gi|332299288|ref|YP_004441209.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Porphyromonas asaccharolytica DSM 20707]
 gi|332176351|gb|AEE12041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Porphyromonas asaccharolytica DSM 20707]
          Length = 393

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 12 CKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C    C ++CP  C       EG ++  +  D CI+C  CE  CP   +    +P
Sbjct: 11 CGCEACRQICPKGCIRLERDEEGFDYPIVDTDRCIECHKCERVCPFMKLDEPRKP 65


>gi|316964779|gb|EFV49731.1| putative ABC transporter, ATP-binding protein [Trichinella
          spiralis]
          Length = 575

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDE---------CIDCGVCEPE 49
          +T +   N   CK  +C +VC   C     G+  + + P           CI CG+C  +
Sbjct: 15 ITRIAIVNNDRCKPKNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFISESLCIGCGICVKK 74

Query: 50 CPVDAI 55
          CP DAI
Sbjct: 75 CPYDAI 80


>gi|301310574|ref|ZP_07216513.1| ferredoxin-type protein [Bacteroides sp. 20_3]
 gi|300832148|gb|EFK62779.1| ferredoxin-type protein [Bacteroides sp. 20_3]
          Length = 532

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDCF----YEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CP        YEG      ++PD CI CG CE  CPV  ++
Sbjct: 457 CSEHCPTQAVHMVPYEGTLTIPQVNPDLCIGCGGCESICPVRPMR 501


>gi|283832972|ref|ZP_06352713.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291071579|gb|EFE09688.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 210

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++  G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 72  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQMNE 131

Query: 60  EPG 62
           E G
Sbjct: 132 EAG 134


>gi|262382041|ref|ZP_06075179.1| ferredoxin-type protein [Bacteroides sp. 2_1_33B]
 gi|262297218|gb|EEY85148.1| ferredoxin-type protein [Bacteroides sp. 2_1_33B]
          Length = 532

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDCF----YEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CP        YEG      ++PD CI CG CE  CPV  ++
Sbjct: 457 CSEHCPTQAVHMVPYEGTLTIPQVNPDLCIGCGGCESICPVRPMR 501


>gi|262165512|ref|ZP_06033249.1| NrfC protein [Vibrio mimicus VM223]
 gi|262025228|gb|EEY43896.1| NrfC protein [Vibrio mimicus VM223]
          Length = 228

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y  E    + +H + C+ CG C   CP
Sbjct: 97  KSCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACP 143


>gi|255318863|ref|ZP_05360089.1| iron-sulfur cluster-binding protein [Acinetobacter radioresistens
          SK82]
 gi|255304119|gb|EET83310.1| iron-sulfur cluster-binding protein [Acinetobacter radioresistens
          SK82]
          Length = 100

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          ++  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 14 VSLYITDECINCD--VCEPVCPNEAIFMGEMIYEIHPDLCTECVGHHEQPQCQLFCPVDC 71

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKES 86
          I  D        ++   E   ++  +T +K +
Sbjct: 72 IPHDPN-----HVETEDELMQKYKMLTAQKSA 98


>gi|255013988|ref|ZP_05286114.1| ferredoxin-type protein [Bacteroides sp. 2_1_7]
          Length = 532

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDCF----YEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CP        YEG      ++PD CI CG CE  CPV  ++
Sbjct: 457 CSEHCPTQAVHMVPYEGTLTIPQVNPDLCIGCGGCESICPVRPMR 501


>gi|256810026|ref|YP_003127395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793226|gb|ACV23895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 439

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ENCILC    C  VCP+D    +  N   +  D CI C  C   CP D I P+T
Sbjct: 318 ENCILC--ATCSNVCPMDAIIVDRSNGEVLFTDNCISCETCAIHCPRDVI-PNT 368


>gi|163794603|ref|ZP_02188574.1| DMSO reductase chain B [alpha proteobacterium BAL199]
 gi|159180327|gb|EDP64850.1| DMSO reductase chain B [alpha proteobacterium BAL199]
          Length = 271

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +C+ C+   CV VCP    Y+ E    + ++ D CI C +C   C   A + D E G+
Sbjct: 89  RSCLHCETPACVTVCPTGASYKREEDGIVLVNEDLCIGCKLCSWACAYGAREYDHEDGV 147


>gi|150007424|ref|YP_001302167.1| ferredoxin-type protein [Parabacteroides distasonis ATCC 8503]
 gi|256839673|ref|ZP_05545182.1| ferredoxin-type protein [Parabacteroides sp. D13]
 gi|298375398|ref|ZP_06985355.1| ferredoxin-type protein [Bacteroides sp. 3_1_19]
 gi|149935848|gb|ABR42545.1| ferredoxin-type protein [Parabacteroides distasonis ATCC 8503]
 gi|256738603|gb|EEU51928.1| ferredoxin-type protein [Parabacteroides sp. D13]
 gi|298267898|gb|EFI09554.1| ferredoxin-type protein [Bacteroides sp. 3_1_19]
          Length = 532

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDCF----YEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CP        YEG      ++PD CI CG CE  CPV  ++
Sbjct: 457 CSEHCPTQAVHMVPYEGTLTIPQVNPDLCIGCGGCESICPVRPMR 501


>gi|150403002|ref|YP_001330296.1| glutamate synthase (NADPH) [Methanococcus maripaludis C7]
 gi|150034032|gb|ABR66145.1| Glutamate synthase (NADPH) [Methanococcus maripaludis C7]
          Length = 510

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +V  E C+LC+   C   C    +    N +  +P+ C  C  C   CP DAI
Sbjct: 13 FVDPERCMLCER--CTTECSWGVYRRQGNKILTYPNRCGACLRCVSNCPRDAI 63


>gi|307945312|ref|ZP_07660648.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4]
 gi|307771185|gb|EFO30410.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4]
          Length = 682

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 18/61 (29%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDA 54
           + +E C LC    CV  CPV         LA +PD+         C+ CG+C+  CP   
Sbjct: 520 IRSEGCTLC--LSCVSACPVGA-------LADNPDQPQVSFTEAACVQCGLCQTTCPESV 570

Query: 55  I 55
           I
Sbjct: 571 I 571


>gi|301064797|ref|ZP_07205171.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441091|gb|EFK05482.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           Y+  E C  C    C   CPVD    G+N +  I  ++CI CG C   CP
Sbjct: 176 YIDPEKCKAC--MICARSCPVDAIVGGKNLIHVIDQEKCIKCGTCFEACP 223


>gi|296132692|ref|YP_003639939.1| NIL domain protein [Thermincola sp. JR]
 gi|296031270|gb|ADG82038.1| NIL domain protein [Thermincola potens JR]
          Length = 137

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIK 56
            + C  C H  C  +CPV   Y     + +  DE  CI CG+C   CPV AI+
Sbjct: 81  VDRCTHCGH--CTSLCPVGALYIIRPSMEVAFDEEKCIVCGLCLKACPVKAIE 131


>gi|294339944|emb|CAZ88307.1| putative Iron-sulfur cluster ferredoxin [Thiomonas sp. 3As]
          Length = 275

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C+   CV VCP    Y+ +    + +  D+CI C  C   CP  A + D + G+
Sbjct: 71  KSCLHCEEPPCVPVCPTGASYKRQEDGIVLVDSDKCIGCKYCSWACPYGAREYDEDRGV 129


>gi|253997114|ref|YP_003049178.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methylotenera mobilis JLW8]
 gi|253983793|gb|ACT48651.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylotenera mobilis JLW8]
          Length = 83

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y+GE    I+PD C +C        C+  CP+D 
Sbjct: 1  MALMITDECINCDV--CEPACPNTAIYQGEEIYEINPDLCTECVGHYDKPQCQQVCPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPRD 62


>gi|311105621|ref|YP_003978474.1| sulfur reductase FeS subunit [Achromobacter xylosoxidans A8]
 gi|310760310|gb|ADP15759.1| sulfur reductase FeS subunit [Achromobacter xylosoxidans A8]
          Length = 256

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+ + +  +E C+ C  C   CP DA
Sbjct: 111 LCNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCAYCVQACPYDA 158


>gi|303242581|ref|ZP_07329058.1| putative PAS/PAC sensor protein [Acetivibrio cellulolyticus CD2]
 gi|302589885|gb|EFL59656.1| putative PAS/PAC sensor protein [Acetivibrio cellulolyticus CD2]
          Length = 556

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 3  YVVTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDT 59
          Y+VT+N   CK+   C+  CPV      +    I  DEC+ CG C   CP +A  I+ D 
Sbjct: 4  YLVTKNS-NCKNCYKCIRHCPVKSLKFTDGQAHIVKDECVLCGECYVVCPQNAKQIRQDV 62

Query: 60 EPGLELWLKINSEYATQWPNITT 82
          E   +L +  N  Y +  P+   
Sbjct: 63 EKAKQL-ISENDVYVSLAPSFVA 84


>gi|262372375|ref|ZP_06065654.1| ferredoxin [Acinetobacter junii SH205]
 gi|262312400|gb|EEY93485.1| ferredoxin [Acinetobacter junii SH205]
          Length = 82

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T  CI C    C+  CP +  YEG     I  + C +C        C   CP+D 
Sbjct: 1  MALMITTACINCDM--CLPECPNEAIYEGAKIYEIDTERCTECVGFYDAPTCIAVCPIDC 58

Query: 55 IKPD 58
          +KPD
Sbjct: 59 VKPD 62


>gi|258625037|ref|ZP_05719958.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
 gi|258582670|gb|EEW07498.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
          Length = 553

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462


>gi|227874303|ref|ZP_03992490.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
 gi|227839854|gb|EEJ50297.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
          Length = 457

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV  CP +               E F  ++  ECI+CG C   CP  A 
Sbjct: 373 TTPCINCGR--CVTACPENLMPTLMMVASLQKNTERFEKLYGMECIECGCCSYVCP--AK 428

Query: 56  KPDTEPGLELWLKINSE 72
           +P T+   ++  K+N+E
Sbjct: 429 RPLTQGFKQMKRKVNAE 445


>gi|147677243|ref|YP_001211458.1| ferredoxin [Pelotomaculum thermopropionicum SI]
 gi|146273340|dbj|BAF59089.1| ferredoxin [Pelotomaculum thermopropionicum SI]
          Length = 60

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPV--DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +E CI C    C  VCP   + F   E    +HP+ C++CG C   CP  +I+
Sbjct: 4  VVNSETCIGCA--TCQSVCPATPNVFEVKEVSAVVHPEACLECGTCVENCPTGSIR 57


>gi|301060755|ref|ZP_07201570.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445152|gb|EFK09102.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           Y+  E C  C    C   CPVD    G+N +  I  ++CI CG C   CP
Sbjct: 176 YIDPEKCKAC--MICARSCPVDAIVGGKNLIHVIDQEKCIKCGTCFEACP 223


>gi|262277293|ref|ZP_06055086.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
          HIMB114]
 gi|262224396|gb|EEY74855.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
          HIMB114]
          Length = 161

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 18 VEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           E  P+   + GE+ L  +P   + CI C +CE  CP  AI  ++EP
Sbjct: 37 FEKGPISPRFRGEHALRRYPNGEERCIACKLCEAACPAQAITIESEP 83


>gi|227355510|ref|ZP_03839905.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|227164306|gb|EEI49195.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 205

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++ E+ F+ ++ + CI C  C   CP  A + D 
Sbjct: 59  FAYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQFDE 118

Query: 60  EPG 62
             G
Sbjct: 119 VKG 121


>gi|220917911|ref|YP_002493215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955765|gb|ACL66149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 490

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C+ C+   C   CP    Y   N  + +  D CI CG C   CP  A
Sbjct: 59  CMQCEAHPCTVDCPSGATYVDANGVVVVDADVCIGCGTCVAACPYGA 105


>gi|152993080|ref|YP_001358801.1| molybdopterin oxidoreductase, iron sulfur subunit [Sulfurovum sp.
           NBC37-1]
 gi|151424941|dbj|BAF72444.1| molybdopterin oxidoreductase, iron sulfur subunit [Sulfurovum sp.
           NBC37-1]
          Length = 535

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECP--VDAIKPD 58
           +C  C   +C+  CP + + + +N +  H D  CI C  C   CP  V    PD
Sbjct: 95  SCNHCIDPECLRGCPTESYIKLDNGIVWHDDPSCIGCQYCTWNCPYEVPVFNPD 148


>gi|154496500|ref|ZP_02035196.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
 gi|150274133|gb|EDN01224.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
          Length = 214

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E CI C+   C  VCPV+C   G     I    C+ CG C   CPV A++
Sbjct: 155 IIPEKCIGCQ--GCRSVCPVNCI-SGTIPRNIDTAHCLHCGNCLSICPVGAVE 204


>gi|158320076|ref|YP_001512583.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140275|gb|ABW18587.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
          Length = 605

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCF--YEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           YV  E CI C+   C++  CP      YEG   L  +I PD C+ C +C   CPV+AIK
Sbjct: 536 YVDPEICISCR--SCIKTNCPPLKMKKYEGIEKLKSSIDPDMCVGCSICAQVCPVNAIK 592


>gi|78222780|ref|YP_384527.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens
           GS-15]
 gi|78194035|gb|ABB31802.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens
           GS-15]
          Length = 320

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           DC +    D  ++G  +  ++ DECI CG+C+  C  DAI
Sbjct: 149 DCPKSATNDVGFQGAIWPVLYADECIGCGLCDKSCTEDAI 188


>gi|302390736|ref|YP_003826557.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201364|gb|ADL08934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 383

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +   CI C    CV+VCP       ++ + I    C+ CG C   CP  A+
Sbjct: 195 IKARCIRCGQ--CVDVCPHKSLQLVDDSIVIDKTVCVKCGRCARVCPEKAL 243


>gi|291166809|gb|EFE28855.1| iron-sulfur cluster-binding protein [Filifactor alocis ATCC 35896]
          Length = 288

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C  CK   CV  CPV+ F   +N + +   P  CI C  C  +CP  A+     P +
Sbjct: 211 TEKCTGCKR--CVAACPVNMFAYIDNTIQMVRDPKYCILCAECYHQCPAKAV---VHPYI 265

Query: 64  ELWLK 68
           E+  K
Sbjct: 266 EVARK 270


>gi|270261663|ref|ZP_06189936.1| transporter [Serratia odorifera 4Rx13]
 gi|270045147|gb|EFA18238.1| transporter [Serratia odorifera 4Rx13]
          Length = 190

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 107 VAYIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIE 161


>gi|224541365|ref|ZP_03681904.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525699|gb|EEF94804.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
          Length = 345

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    C  +CP  C +       I   +C+ CG C   CPV AI+
Sbjct: 144 YTITDRCIHC--GKCETICPQRCIHNE----VIDVAQCLHCGACLEICPVQAIE 191


>gi|221195371|ref|ZP_03568426.1| putative ferredoxin [Atopobium rimae ATCC 49626]
 gi|221184558|gb|EEE16950.1| putative ferredoxin [Atopobium rimae ATCC 49626]
          Length = 426

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C EVCPVD        ++I  + CI CG+C+  CP +
Sbjct: 72  CQEVCPVDAIDIHNQTVSI-AEHCIQCGLCDSVCPTE 107


>gi|163849670|ref|YP_001637713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163661275|gb|ABY28642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
          Length = 936

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + C+    CE  CP
Sbjct: 760 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCP 803


>gi|20454185|gb|AAM22202.1|AF501325_1 putative ferredoxin 2[4Fe-4S] [Mastigamoeba balamuthi]
          Length = 63

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++CI C+   CV  CPV  F    +  +F+A   DEC+ C  C   CPV AI 
Sbjct: 11 DDCIGCQ--ACVGACPVGLFEMKNDKSHFIAARKDECVHCESCIAACPVTAIS 61


>gi|57234310|ref|YP_181645.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
 gi|57224758|gb|AAW39815.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
          Length = 136

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 5   VTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIK 56
           VT N   C H   CV +CPVD F   E+   I+ D  +CI CG+C   CP  A++
Sbjct: 79  VTRNENRCTHCGACVTMCPVDAFSIDEDNREINFDAKKCIVCGICIQACPPRAME 133


>gi|18977042|ref|NP_578399.1| putative ATPase RIL [Pyrococcus furiosus DSM 3638]
 gi|18892677|gb|AAL80794.1| RNase l inhibitor [Pyrococcus furiosus DSM 3638]
          Length = 590

 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD------CFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+         + EN+  I     C  CG+C  +CP  AI
Sbjct: 16 CGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPFKAI 66


>gi|333001063|gb|EGK20633.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-272]
 gi|333015432|gb|EGK34771.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-227]
          Length = 180

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLPTGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  FELAVWKK 103


>gi|295106564|emb|CBL04107.1| Fe-S-cluster-containing hydrogenase components 2 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 207

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 22/52 (42%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            C  C+   C+ VCP    Y+  + L +    C  C VC   CP  A+ P  
Sbjct: 50  TCHQCEGAPCLAVCPEGAIYQERDRLQVDEARCTGCLVCALACPFGAVYPSA 101


>gi|218262081|ref|ZP_03476678.1| hypothetical protein PRABACTJOHN_02350 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223610|gb|EEC96260.1| hypothetical protein PRABACTJOHN_02350 [Parabacteroides johnsonii
          DSM 18315]
          Length = 458

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C+ C H  C+  CP       E   +I    C+DCG C   CP +AI
Sbjct: 15 DRCVGCTH--CMTKCPTGAIRIREGKASIRKGWCVDCGECLKACPAEAI 61


>gi|154492558|ref|ZP_02032184.1| hypothetical protein PARMER_02192 [Parabacteroides merdae ATCC
           43184]
 gi|154087783|gb|EDN86828.1| hypothetical protein PARMER_02192 [Parabacteroides merdae ATCC
           43184]
          Length = 529

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDCF----YEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CP        Y+G      I+PD CI CG CE  CPV  ++
Sbjct: 454 CAEHCPTQAVHMVPYKGTLTIPQINPDLCIGCGGCESICPVRPMR 498


>gi|27904612|ref|NP_777738.1| electron transport complex protein RnfB [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|33301646|sp|Q89AW9|RNFB_BUCBP RecName: Full=Electron transport complex protein rnfB
 gi|27904009|gb|AAO26843.1| electron transport complex protein RnfB [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 169

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 1   MTYVVTE----NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY + E    NC+ C  + C  VCPVD      NF   +  D C  C +C P CP + I
Sbjct: 104 VTYSIVEIDENNCVGC--SKCRLVCPVDAVVGTYNFRHTVLIDSCTGCNLCIPLCPTNCI 161

Query: 56  K 56
           K
Sbjct: 162 K 162


>gi|113970402|ref|YP_734195.1| electron transport complex protein RnfB [Shewanella sp. MR-4]
 gi|123324999|sp|Q0HIH9|RNFB_SHESM RecName: Full=Electron transport complex protein rnfB
 gi|113885086|gb|ABI39138.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-4]
          Length = 193

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159


>gi|126090183|ref|YP_001041664.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|126174476|ref|YP_001050625.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|125997681|gb|ABN61756.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS155]
 gi|125999839|gb|ABN63909.1| hypothetical protein Sbal_4546 [Shewanella baltica OS155]
          Length = 199

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK--P 57
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I   P
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIP 163

Query: 58  DTEPGLELW 66
            T P L+ W
Sbjct: 164 VT-PNLKNW 171


>gi|46125447|ref|XP_387277.1| hypothetical protein FG07101.1 [Gibberella zeae PH-1]
          Length = 607

 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDE---------CIDCGVCEPE 49
          +T +   N   C+   C + C   C     G+  + + P+          CI CG+C   
Sbjct: 5  LTRIAIVNSDKCRPRKCRQECKKSCPVVRSGKLCIEVQPESKLAFISESLCIGCGICPKR 64

Query: 50 CPVDAI 55
          CP DAI
Sbjct: 65 CPFDAI 70


>gi|297518377|ref|ZP_06936763.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia
          coli OP50]
          Length = 173

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
          ++C  C H  CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 40 KSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTK 97


>gi|92115052|ref|YP_574980.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter
          salexigens DSM 3043]
 gi|91798142|gb|ABE60281.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
          salexigens DSM 3043]
          Length = 82

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI P  E
Sbjct: 7  DECINCDVCEPECPNGAISPGEE 29


>gi|114563344|ref|YP_750857.1| electron transport complex protein RnfB [Shewanella frigidimarina
           NCIMB 400]
 gi|114334637|gb|ABI72019.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 193

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I
Sbjct: 107 VAYIREDECIGC--TKCIQACPVDAILGAGKLMHTVIAKDCTGCDLCVEPCPVDCI 160


>gi|293603975|ref|ZP_06686388.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817579|gb|EFF76647.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter
           piechaudii ATCC 43553]
          Length = 214

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            +CI C  T C++ CPVD        +  +  D C  C +C   CPVD I+    P    
Sbjct: 84  SHCIGC--TLCIQACPVDAIVGANKHMHTVLADWCTGCDLCVAPCPVDCIQ--MVPAGRS 139

Query: 66  WLKINSEYATQW-PNITTKKESLPS 89
           W + ++  + Q   N   + E L S
Sbjct: 140 WTEQDAAISRQRHRNHLARAERLAS 164


>gi|260655742|ref|ZP_05861211.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
 gi|260629358|gb|EEX47552.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
          Length = 56

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  VV ++ C+ C+   CV  CPV+     ++   ++P+ C++CG C   CP +AI
Sbjct: 1  MAAVVNKDMCVGCET--CVGTCPVEAISMADDKAVVNPEVCVECGACVSACPSEAI 54


>gi|291284040|ref|YP_003500858.1| Electron transport protein hydN [Escherichia coli O55:H7 str.
           CB9615]
 gi|209761974|gb|ACI79299.1| electron transport protein HydN [Escherichia coli]
 gi|290763913|gb|ADD57874.1| Electron transport protein hydN [Escherichia coli O55:H7 str.
           CB9615]
 gi|320662296|gb|EFX29693.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 175

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C  VCP      G+ F+ +  + CI C  C   CP  A++    P + 
Sbjct: 58  CRQCEDAPCANVCPNGAISRGKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIR 113


>gi|212635176|ref|YP_002311701.1| electron transport complex protein RnfB [Shewanella piezotolerans
           WP3]
 gi|226735433|sp|B8CM57|RNFB_SHEPW RecName: Full=Electron transport complex protein rnfB
 gi|212556660|gb|ACJ29114.1| Electron transport complex, RnfABCDGE type, B subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAFIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|188579304|ref|YP_001922749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179342802|gb|ACB78214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 936

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + C+    CE  CP
Sbjct: 760 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCP 803


>gi|157370480|ref|YP_001478469.1| electron transport complex protein RnfB [Serratia proteamaculans
           568]
 gi|166991045|sp|A8GE01|RNFB_SERP5 RecName: Full=Electron transport complex protein rnfB
 gi|157322244|gb|ABV41341.1| electron transport complex, RnfABCDGE type, B subunit [Serratia
           proteamaculans 568]
          Length = 190

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 107 VAYIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIE 161


>gi|257075574|ref|ZP_05569935.1| ferredoxin [Ferroplasma acidarmanus fer1]
          Length = 69

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CV +CP D     E  +AI+ D+CI C  C   CP  AI  +
Sbjct: 22 CVGMCPTDAINLDETVIAINEDKCIKCEFCVIGCPTGAISAE 63


>gi|33596549|ref|NP_884192.1| putative iron-sulfur binding protein [Bordetella parapertussis
           12822]
 gi|33566318|emb|CAE37231.1| putative iron-sulfur binding protein [Bordetella parapertussis]
          Length = 705

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V ++ C LC    CV  CP +   +      L +    C+ CG+C   CP +AI
Sbjct: 571 VDSDACTLC--MSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAI 622


>gi|317492085|ref|ZP_07950516.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919968|gb|EFV41296.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 202

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVVSDLCTGCNLCVAPCPTDCI 162


>gi|229826121|ref|ZP_04452190.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
 gi|229789694|gb|EEP25808.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP  C           I  D CI CG C   CP  A+     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKTCVSLDRTNGRSKIDQDVCIKCGKCAEVCPYHAVIIQERP 175


>gi|146329455|ref|YP_001209464.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232925|gb|ABQ13903.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 189

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++V + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 107 VAWIVEDWCIGC--TRCIQACPVDAIVGSTQRMHTVLSAECTGCELCIAPCPVDCI 160


>gi|145589679|ref|YP_001156276.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048085|gb|ABP34712.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 230

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC-IDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD        + +  D C   C +C P CPVD I
Sbjct: 89  VAFIDPQKCIGC--TLCIQACPVDAIIGASKQMHVVLDACCTGCDLCIPPCPVDCI 142


>gi|89892418|gb|ABD78998.1| HI1046-like protein [Haemophilus influenzae]
          Length = 122

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++  + F+ ++ + CI C  C   CP DA + D 
Sbjct: 59  FAYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDA 118

Query: 60  E 60
           +
Sbjct: 119 Q 119


>gi|78044396|ref|YP_359648.1| formate dehydrogenase-O, iron-sulfur subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996511|gb|ABB15410.1| formate dehydrogenase-O, iron-sulfur subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 260

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTE 60
           + C  C    C + CP D  Y  +    +   D CI C  C+  CP +  + DT+
Sbjct: 70  QQCFHCGDAACEKACPEDAIYHTKEGAVVRDYDRCIGCDYCQRACPFNIPRIDTQ 124


>gi|219670276|ref|YP_002460711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540536|gb|ACL22275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 271

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    C++ C  +   + E  F  I  D+CI CG C   CP D  + D
Sbjct: 73  QCFHCADAACLKACSSEAISKTETGFTIIDEDKCIGCGYCVTNCPFDIPRID 124


>gi|323498655|ref|ZP_08103647.1| hypothetical protein VISI1226_02972 [Vibrio sinaloensis DSM 21326]
 gi|323316353|gb|EGA69372.1| hypothetical protein VISI1226_02972 [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACP 143


>gi|317491443|ref|ZP_07949879.1| dimethylsulfoxide reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920990|gb|EFV42313.1| dimethylsulfoxide reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 205

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCSDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNE 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|299138041|ref|ZP_07031221.1| DMSO reductase anchor subunit (DmsC) [Acidobacterium sp. MP5ACTX8]
 gi|298599971|gb|EFI56129.1| DMSO reductase anchor subunit (DmsC) [Acidobacterium sp. MP5ACTX8]
          Length = 532

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           + ++  C  C   +C++ CPVD + +     + +H  D CI C  C   CP    + + E
Sbjct: 99  FYLSMGCNHCLSAECIKGCPVDAYTKDSITGIVLHSADACIGCQYCVWNCPYSVPQFNPE 158

Query: 61  PGL 63
            G+
Sbjct: 159 RGV 161


>gi|300087162|ref|YP_003757684.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526895|gb|ADJ25363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 265

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEPGL 63
           V++ C+ C    CV VCPV   ++  N   +  + +CI C  C+  CP D  K + +   
Sbjct: 66  VSKRCLHCFSPACVSVCPVGALHKEANGAVVWEEGKCIGCRYCQNACPFDIPKFEWD--- 122

Query: 64  ELWLKIN 70
           E W KI+
Sbjct: 123 EPWPKIS 129


>gi|322419902|ref|YP_004199125.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320126289|gb|ADW13849.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter sp. M18]
          Length = 255

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 19/89 (21%)

Query: 9   CILCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD- 58
           C+ C +  CV  CPV         +    G   + ++  +CI CG C P CP  A   D 
Sbjct: 80  CMQCDNPPCVAACPVKGADGATWKETKGIGNGIVLVNYAKCIGCGKCVPACPYSARTMDN 139

Query: 59  ----TEPGLELWLKINS----EYATQWPN 79
               TE G +L +K  +    EY   WP 
Sbjct: 140 GSFHTEGGPQL-MKYETLPSFEYGRNWPR 167


>gi|168186747|ref|ZP_02621382.1| polyferredoxin [Clostridium botulinum C str. Eklund]
 gi|169295268|gb|EDS77401.1| polyferredoxin [Clostridium botulinum C str. Eklund]
          Length = 294

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +  CI C    C + CP D      N   I   +C++CG+C  +CP  AI+   +P
Sbjct: 211 ICSTGCIGCGL--CAKACPKDAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQNFRKP 266


>gi|10802771|gb|AAG23607.1|AF244658_1 carbon monoxide dehydrogenase [Carboxydothermus hydrogenoformans]
          Length = 128

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+
Sbjct: 58  RQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIR 108


>gi|89895846|ref|YP_519333.1| formate dehydrogenase beta subunit [Desulfitobacterium hafniense
           Y51]
 gi|89335294|dbj|BAE84889.1| formate dehydrogenase beta subunit [Desulfitobacterium hafniense
           Y51]
          Length = 271

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    C++ C  +   + E  F  I  D+CI CG C   CP D  + D
Sbjct: 73  QCFHCADAACLKACSSEAISKTETGFTIIDEDKCIGCGYCVTNCPFDIPRID 124


>gi|56476886|ref|YP_158475.1| electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
 gi|56312929|emb|CAI07574.1| Electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
          Length = 176

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP-GLE 64
           E CI C  T C++VCP D    G +    +  D C  CG C   CP +A+     P  L+
Sbjct: 108 EICIGC--TRCIKVCPTDAILGGPKQIHNVLRDACTGCGSCIERCPTEAMAMQPLPVTLQ 165

Query: 65  LWL 67
            W+
Sbjct: 166 QWV 168


>gi|307594818|ref|YP_003901135.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
           distributa DSM 14429]
 gi|307550019|gb|ADN50084.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1226

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 17  CVEVCPVDCFY--------EGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CV+ CP+             G +++ I P    +C+ CG+CE  CP +AI  + E  + +
Sbjct: 31  CVKRCPMGILELTREEVNPRGYHYVRIKPGKEVDCVACGICEKVCPTNAIYVEHEEEITI 90

Query: 66  ---WLKINSEYATQ 76
               +KI+    TQ
Sbjct: 91  KDYLMKIDKTKVTQ 104


>gi|301631691|ref|XP_002944931.1| PREDICTED: ferredoxin-like [Xenopus (Silurana) tropicalis]
          Length = 85

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|262274542|ref|ZP_06052353.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
 gi|262221105|gb|EEY72419.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
          Length = 194

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  ++CI C  T C++ CPVD        +  +  DEC  C +C   CP D I+
Sbjct: 106 VAFIHEDDCIGC--TKCIQACPVDAIVGSTKAMHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|257790423|ref|YP_003181029.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474320|gb|ACV54640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECP 51
           ++ ++ +C+ C+   C++VCP      +    + ++PD CI C  C   CP
Sbjct: 84  SFFISTSCMHCEDPSCMKVCPAGAISKDAHGIVKVNPDVCIGCKYCFQACP 134


>gi|238758248|ref|ZP_04619427.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia aldovae
          ATCC 35236]
 gi|238703578|gb|EEP96116.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia aldovae
          ATCC 35236]
          Length = 172

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D 
Sbjct: 26 FAYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDE 85

Query: 60 EPG 62
            G
Sbjct: 86 AKG 88


>gi|145508706|ref|XP_001440297.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145535448|ref|XP_001453457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407514|emb|CAK72900.1| unnamed protein product [Paramecium tetraurelia]
 gi|124421179|emb|CAK86060.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19  EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           E  P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 112 EKGPLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 157


>gi|124485356|ref|YP_001029972.1| hypothetical protein Mlab_0531 [Methanocorpusculum labreanum Z]
 gi|124362897|gb|ABN06705.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 367

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ + CI+C    C+  CP  C       ++I  D CI C +C   CP  AI  D +   
Sbjct: 189 ILEDKCIVCGA--CMNACPEFCISIAGKAVSIDLDHCIGCLMCMNTCPEHAIDLDWKDDG 246

Query: 64  ELWLKINSEYATQWPNITTKK 84
            ++++   EYA       T K
Sbjct: 247 VVFVERMIEYAAGAVGNKTGK 267


>gi|24374053|ref|NP_718096.1| electron transport complex protein RnfB [Shewanella oneidensis
           MR-1]
 gi|81744759|sp|Q8EE80|RNFB_SHEON RecName: Full=Electron transport complex protein rnfB
 gi|24348528|gb|AAN55540.1|AE015693_2 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 193

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159


>gi|20090344|ref|NP_616419.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19915348|gb|AAM04899.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 102

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CV VCP       E ++ +    CI CG+C+  CPV AI+
Sbjct: 60 CVGVCPKGALELVETWIEVDESTCIKCGICDRICPVGAIE 99


>gi|56477090|ref|YP_158679.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1]
 gi|56313133|emb|CAI07778.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1]
          Length = 689

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V++ C LC    CV  CP        +   L      C+ CG+C   CP +A+
Sbjct: 553 VSDACTLC--MSCVSACPSGALSAASDAMRLGFIEKSCVQCGLCASSCPENAV 603


>gi|119716585|ref|YP_923550.1| putative glutamate synthase (NADPH) small subunit [Nocardioides sp.
           JS614]
 gi|119537246|gb|ABL81863.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 544

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC  C   +C  VCP +      + +    I  D C  CG+C  ECP  AI+
Sbjct: 489 NCFSCD--NCFGVCPDNAITKTGDPDTPYLIDLDYCKGCGLCAAECPAGAIR 538


>gi|308274768|emb|CBX31367.1| hypothetical protein N47_E48790 [uncultured Desulfobacterium sp.]
          Length = 943

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C+ C    CV  CP D   F   +  + I   +C  CGVC   CP  AI+ +     
Sbjct: 872 TEHCVKC--LTCVRSCPFDVPVFNIEKQIIEIDDAKCQGCGVCASVCPRQAIQLNYYEDN 929

Query: 64  ELWLKINSEYA 74
           ++  KI++  A
Sbjct: 930 QITSKIDALLA 940


>gi|258405352|ref|YP_003198094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797579|gb|ACV68516.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 189

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIH-PDECIDCGVCEPECPVDA 54
           C  C++  C+ VCPV  +Y+  E+ + +H  D+CI CG C   CP  A
Sbjct: 59  CNHCENPTCLNVCPVKAYYKREEDGIVVHEQDKCIGCGNCIRSCPYGA 106


>gi|145541694|ref|XP_001456535.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424347|emb|CAK89138.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19  EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           E  P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 112 EKGPLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 157


>gi|145536107|ref|XP_001453781.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421514|emb|CAK86384.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19  EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           E  P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 112 EKGPLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 157


>gi|51894426|ref|YP_077117.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
 gi|51858115|dbj|BAD42273.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
          Length = 199

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           I C+H +   C   CPV      +  + +  + CI C  C   CP  A+  D  P LE  
Sbjct: 59  IQCRHCEDAPCANACPVGAIVRQDGVVLVKQERCIGCKTCVLACPFGAM--DMVPALENG 116

Query: 67  LKI 69
            ++
Sbjct: 117 ARV 119


>gi|114047406|ref|YP_737956.1| electron transport complex protein RnfB [Shewanella sp. MR-7]
 gi|123030634|sp|Q0HVF6|RNFB_SHESR RecName: Full=Electron transport complex protein rnfB
 gi|113888848|gb|ABI42899.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-7]
          Length = 193

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159


>gi|288930758|ref|YP_003434818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
 gi|288893006|gb|ADC64543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
          Length = 59

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CV VC  D     E +L I+PD+C  C VC   CP+ A++
Sbjct: 17 CVSVCKFDANELVETYLEIYPDKCTLCMVCVKTCPMGALE 56


>gi|251792885|ref|YP_003007611.1| electron transport protein HydN [Aggregatibacter aphrophilus
          NJ8700]
 gi|247534278|gb|ACS97524.1| electron transport protein HydN [Aggregatibacter aphrophilus
          NJ8700]
          Length = 199

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ILC+H D   C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 49 ILCRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|258405526|ref|YP_003198268.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfohalobium retbaense DSM 5692]
 gi|257797753|gb|ACV68690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfohalobium retbaense DSM 5692]
          Length = 92

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 17 CVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          CV  CP       E   A  +HP+ECI+CG CE  CP  AI    + G E
Sbjct: 25 CVAFCPGKVLELNEQGKAEVVHPEECINCGFCELHCPDFAIVVTPKEGAE 74


>gi|204926813|ref|ZP_03218015.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323478|gb|EDZ08673.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 223

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|154492142|ref|ZP_02031768.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
          43184]
 gi|154087367|gb|EDN86412.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
          43184]
          Length = 458

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C+ C H  C+  CP       E   +I    C+DCG C   CP +AI
Sbjct: 15 DRCVGCTH--CMTKCPTGAIRIREGKASIRKGWCVDCGECLKACPTEAI 61


>gi|254361778|ref|ZP_04977913.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|153093313|gb|EDN74309.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
          Length = 205

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + +V+ + CI C  T C++ CPVD        +  I PD C  C +C   CP + I+
Sbjct: 108 VAFVIEDLCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNCIE 162


>gi|152983310|ref|YP_001354824.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151283387|gb|ABR91797.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 87

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|84489476|ref|YP_447708.1| glutamate synthase subunit 2 [Methanosphaera stadtmanae DSM 3091]
 gi|84372795|gb|ABC57065.1| putative glutamate synthase, subunit 2 with ferredoxin domain
          [Methanosphaera stadtmanae DSM 3091]
          Length = 492

 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 11 LCKHT-DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          LCK+   C   CP D  YE   +    +H + C+ C +CE  CP +AI
Sbjct: 33 LCKNCYSCYSNCPHDV-YEIINDEPQPVHKENCVGCKICEQMCPTNAI 79


>gi|83589316|ref|YP_429325.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572230|gb|ABC18782.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 231

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VVT  C+ C    C  VCP     +  +  + +   +CI C  C+  CP DA   + + G
Sbjct: 53  VVTTQCMHCDDPPCARVCPTGATQKRPDGIVIVDESKCIGCRYCQSACPYDARSFNPQRG 112

Query: 63  L 63
           +
Sbjct: 113 I 113


>gi|127512995|ref|YP_001094192.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           loihica PV-4]
 gi|166225086|sp|A3QEN5|RNFB_SHELP RecName: Full=Electron transport complex protein rnfB
 gi|126638290|gb|ABO23933.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           loihica PV-4]
          Length = 189

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 106 VAFIREAECIGC--TKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVEPCPVDCI 159


>gi|330935903|ref|XP_003305174.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
 gi|311317931|gb|EFQ86730.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
          Length = 230

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 27/105 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI 
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAIV 186

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                        N+EYAT+     T++E L +  K+     K+E
Sbjct: 187 EGP----------NAEYATE-----TREELLYNKEKLLANGDKWE 216


>gi|303244116|ref|ZP_07330454.1| Glutamate synthase (NADPH) [Methanothermococcus okinawensis IH1]
 gi|302485501|gb|EFL48427.1| Glutamate synthase (NADPH) [Methanothermococcus okinawensis IH1]
          Length = 510

 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C+LC+   CV  C    F    N +  + + C  C  C   CP DAI     P
Sbjct: 17 ERCMLCER--CVNQCSWGVFRRDGNRIITYSNRCGACQRCVSMCPRDAITIHENP 69


>gi|269963060|ref|ZP_06177396.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
 gi|269832192|gb|EEZ86315.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
          Length = 553

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECP 51
           +++C LC    CV VCP    + +GE+  L     +CI CG+CE  CP
Sbjct: 417 SKDCTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCEKACP 462


>gi|269215798|ref|ZP_06159652.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130748|gb|EEZ61824.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 206

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDE-CIDCGVCEPECPVDAIKPDT 59
           T+ ++  C  C +  CV VCPV   Y + E+    H DE CI C +C   CP     P  
Sbjct: 65  TFHLSMTCNNCANPACVAVCPVGAMYIDEEDGTTQHDDEMCIGCQMCINACPYGV--PKF 122

Query: 60  EPGLELWLKINS 71
           + GL +  K +S
Sbjct: 123 DDGLSISRKCDS 134


>gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating family protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 306

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + C+ C   +CVE CP      G + +  + D C  CGVC   CP  A
Sbjct: 56  VPDKCVGCG--ECVEACPQGALSPGPDGMLRNQDACTACGVCAEVCPALA 103


>gi|218779495|ref|YP_002430813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760879|gb|ACL03345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 361

 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C++ CP      G++ +  +  D C  C  C   CPV+AI   ++PG 
Sbjct: 287 CTACE--TCIDRCPPQALSMGDDDVPEVDLDLCFGCAACATGCPVEAISMVSKPGF 340


>gi|117920613|ref|YP_869805.1| electron transport complex protein RnfB [Shewanella sp. ANA-3]
 gi|166225087|sp|A0KX80|RNFB_SHESA RecName: Full=Electron transport complex protein rnfB
 gi|117612945|gb|ABK48399.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. ANA-3]
          Length = 193

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCI 159


>gi|332883767|gb|EGK04047.1| hypothetical protein HMPREF9456_01075 [Dysgonomonas mossii DSM
           22836]
          Length = 514

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 17  CVEVCPVDCF----YEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C E CP        YEG   L I    PD C+ CG CE  CPV        P   ++++ 
Sbjct: 437 CAEHCPTQAVTMIPYEGHEGLTIPFITPDICVGCGGCEYICPV-------RPYRAIYVEG 489

Query: 70  NSEYATQWPNITTKKESL 87
           N E+  +      KKE +
Sbjct: 490 NKEHKQRKAFKEEKKEDV 507


>gi|323700274|ref|ZP_08112186.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323460206|gb|EGB16071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 704

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 17  CVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECP 51
           CV  CP D  + G E    I P+ C  CG C   CP
Sbjct: 144 CVRACPFDAIHMGPEGLPVIDPNRCKACGNCVDACP 179


>gi|322615434|gb|EFY12354.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618494|gb|EFY15383.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622094|gb|EFY18944.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627165|gb|EFY23957.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631125|gb|EFY27889.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637657|gb|EFY34358.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642468|gb|EFY39069.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643657|gb|EFY40211.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648271|gb|EFY44731.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654683|gb|EFY51003.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659643|gb|EFY55886.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662148|gb|EFY58364.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666106|gb|EFY62284.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672526|gb|EFY68637.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675955|gb|EFY72026.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680440|gb|EFY76478.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684666|gb|EFY80670.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194656|gb|EFZ79847.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323201742|gb|EFZ86806.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206256|gb|EFZ91218.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213267|gb|EFZ98069.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215638|gb|EGA00382.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222060|gb|EGA06446.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227927|gb|EGA12081.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229096|gb|EGA13225.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236294|gb|EGA20370.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237586|gb|EGA21647.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241748|gb|EGA25777.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248105|gb|EGA32042.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254565|gb|EGA38376.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258375|gb|EGA42052.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259655|gb|EGA43289.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265928|gb|EGA49424.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270370|gb|EGA53818.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 223

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|296283848|ref|ZP_06861846.1| NADH dehydrogenase subunit I [Citromicrobium bathyomarinum JL354]
          Length = 161

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE---------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 60  ERCIACKL--CEAVCPAQAITIESEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
                        N EY+T+     T++E L   AK+     K+E+  + N
Sbjct: 118 EGP----------NFEYSTE-----TREELLYDKAKLLANGDKWERAIAAN 153


>gi|296133322|ref|YP_003640569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031900|gb|ADG82668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 272

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           +   C+ C    C +VCP +  F+  E  + +  ++CI CG C   CP
Sbjct: 70  LKRQCMHCTEAACEKVCPENAIFHTAEGAVVVDREKCIGCGYCAQYCP 117


>gi|261211018|ref|ZP_05925308.1| NrfC protein [Vibrio sp. RC341]
 gi|260839993|gb|EEX66593.1| NrfC protein [Vibrio sp. RC341]
          Length = 212

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y  E    + +H + C+ CG C   CP
Sbjct: 81  KSCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACP 127


>gi|253577805|ref|ZP_04855077.1| CoB-CoM heterodisulfide reductase subunit A [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251850123|gb|EES78081.1| CoB-CoM heterodisulfide reductase subunit A [Ruminococcus sp.
           5_1_39BFAA]
          Length = 662

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNI 80
           +++ D+C  CGVC+ +CP   I  +   GL     I + +A   PN+
Sbjct: 237 SVNMDKCTGCGVCQEKCPSKKIPNEFNRGLNNRTAIYTPFAQAIPNV 283


>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 592

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAI 55
           +TYV+T+ C  C  T C  VC V    EG    ++F  I P++C+ CG C   C   AI
Sbjct: 536 ITYVITDACRGC--TACTRVCAVKAI-EGNIKEKHF--IDPEKCVRCGACISACRFGAI 589


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C  C  + C   CPV   Y+ E+    I   +C  CG+C   CP  AIK +
Sbjct: 543 VIREECRKC--SICFRNCPVGAIYKDEDGTYVIDQSKCTKCGICFQVCPFSAIKKE 596


>gi|149908584|ref|ZP_01897246.1| tetrathionate reductase, subunit B [Moritella sp. PE36]
 gi|149808418|gb|EDM68355.1| tetrathionate reductase, subunit B [Moritella sp. PE36]
          Length = 257

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           ++ +   C  C++  CV+VCPV   ++ E+ + +  +E C+ C  C   CP DA
Sbjct: 104 SFTLPRLCNHCENPPCVKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDA 157


>gi|153832369|ref|ZP_01985036.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156974556|ref|YP_001445463.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148871398|gb|EDL70261.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156526150|gb|ABU71236.1| hypothetical protein VIBHAR_02274 [Vibrio harveyi ATCC BAA-1116]
          Length = 553

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECP 51
           +++C LC    CV VCP    + +GE+  L     +CI CG+CE  CP
Sbjct: 417 SKDCTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCEKACP 462


>gi|332296916|ref|YP_004438838.1| methyl-accepting chemotaxis sensory transducer [Treponema
          brennaborense DSM 12168]
 gi|332180019|gb|AEE15707.1| methyl-accepting chemotaxis sensory transducer [Treponema
          brennaborense DSM 12168]
          Length = 690

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPEC 50
          C+ C    C+ VCP     +G  N++ ++ D CI CG C   C
Sbjct: 16 CVNCHR--CITVCPAKMCNDGSGNYVGVNTDLCIGCGECIEAC 56


>gi|332159501|ref|YP_004424780.1| putative ATPase RIL [Pyrococcus sp. NA2]
 gi|331034964|gb|AEC52776.1| putative ATPase RIL [Pyrococcus sp. NA2]
          Length = 589

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD-------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+          E  N   I    C  CG+C  +CP  AI
Sbjct: 16 CGHFLCERVCPVNRMGGEAIIIDEENNKPIIQEASCTGCGICVHKCPFKAI 66


>gi|325578553|ref|ZP_08148653.1| hydrogenase-4 component A [Haemophilus parainfluenzae ATCC 33392]
 gi|325159789|gb|EGC71919.1| hydrogenase-4 component A [Haemophilus parainfluenzae ATCC 33392]
          Length = 214

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 10  ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ILC+H D   C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 64  ILCRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAI 112


>gi|323491428|ref|ZP_08096612.1| hypothetical protein VIBR0546_18742 [Vibrio brasiliensis LMG 20546]
 gi|323314297|gb|EGA67377.1| hypothetical protein VIBR0546_18742 [Vibrio brasiliensis LMG 20546]
          Length = 228

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENPPCVYVCPTGAAYKDEKTGIIDVHKEKCVGCGYCLAACP 143


>gi|308163356|gb|EFO65699.1| Ferredoxin Fd1, Fd2 [Giardia lamblia P15]
          Length = 59

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 12 CKHTDCVEVCPVDCFY--EGENFLAI-HPDECIDCGVCEPECPVDAIK 56
          C   +C EVCP D F    G   +++  PD CI+CG C   C  +A+ 
Sbjct: 11 CATMECCEVCPADVFDFPSGAKVVSVARPDACIECGACVSACASNALS 58


>gi|262171714|ref|ZP_06039392.1| NrfC protein [Vibrio mimicus MB-451]
 gi|261892790|gb|EEY38776.1| NrfC protein [Vibrio mimicus MB-451]
          Length = 212

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y  E    + +H + C+ CG C   CP
Sbjct: 81  KSCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACP 127


>gi|154150875|ref|YP_001404493.1| putative ATPase RIL [Candidatus Methanoregula boonei 6A8]
 gi|153999427|gb|ABS55850.1| ABC transporter related [Methanoregula boonei 6A8]
          Length = 590

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)

Query: 15 TDCVEVCPV-----DCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
          T+C+  CP      +    GE+  A+  +E C+ CG+C  +CP DAI
Sbjct: 18 TECIIYCPRVRTGDETVSIGEDGKALISEELCVGCGICIKKCPFDAI 64


>gi|159107463|ref|XP_001704011.1| Ferredoxin Fd1, Fd2 [Giardia lamblia ATCC 50803]
 gi|157432058|gb|EDO76337.1| Ferredoxin Fd1, Fd2 [Giardia lamblia ATCC 50803]
          Length = 59

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 12 CKHTDCVEVCPVDCFY--EGENFLAI-HPDECIDCGVCEPECPVDAIK 56
          C   +C EVCP D F    G   +++  PD CI+CG C   C  +A+ 
Sbjct: 11 CATMECCEVCPADVFDFPSGAKVVSVARPDACIECGACVSACASNALS 58


>gi|329904067|ref|ZP_08273662.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae
          bacterium IMCC9480]
 gi|327548151|gb|EGF32865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 86

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|326800094|ref|YP_004317913.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
 gi|326550858|gb|ADZ79243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
          Length = 189

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C++  C  VCP D  ++ ++F  +H      CI C  C   CP    K   E   EL
Sbjct: 59  CMHCENPACANVCPADAIHQ-DDFGVVHSANTPRCIGCSNCVLACPFGVPKKMEEA--EL 115

Query: 66  WLKINSEY----ATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
            +K N  Y    A + P   T     PS A   G +++ E+   PN
Sbjct: 116 MMKCNMCYDRTSAGKKPMCAT---VCPSQALFYGTREEIER-MRPN 157


>gi|325473842|gb|EGC77030.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           F0402]
          Length = 500

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T  C  C    C+  CP            I  ++CI+CG+C   CP  A+
Sbjct: 120 YMITNACQACVARPCMMNCPKTAIAISGGRSRIDEEKCINCGICLKNCPYHAV 172


>gi|318058600|ref|ZP_07977323.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces sp.
           SA3_actG]
 gi|318080109|ref|ZP_07987441.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces sp.
           SA3_actF]
          Length = 315

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 126 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIE 177


>gi|307945104|ref|ZP_07660440.1| iron-sulfur cluster-binding protein [Roseibium sp. TrichSKD4]
 gi|307770977|gb|EFO30202.1| iron-sulfur cluster-binding protein [Roseibium sp. TrichSKD4]
          Length = 249

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    CV VCP    Y+   +  + +    CI CG+C   CP  A + D   G+
Sbjct: 81  KSCLHCDTAPCVTVCPTGASYKRSEDGIVLVDESACIGCGLCAWACPYGARELDQVAGV 139


>gi|301156415|emb|CBW15886.1| formate hydrogenlyase subunit 2 (fhl subunit 2) (hydrogenase-3
          component b) [Haemophilus parainfluenzae T3T1]
          Length = 199

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ILC+H D   C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 49 ILCRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|221068920|ref|ZP_03545025.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
          testosteroni KF-1]
 gi|220713943|gb|EED69311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
          testosteroni KF-1]
          Length = 86

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|218528219|ref|YP_002419035.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218520522|gb|ACK81107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 936

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + C+    CE  CP
Sbjct: 760 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCP 803


>gi|158521172|ref|YP_001529042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509998|gb|ABW66965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 1002

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
           + PD+C  CG+CE +CP   +  + E GL     I S  A   PN
Sbjct: 106 VDPDKCTGCGICEKKCP-KLVTSEFEQGLTKRKAIYSLLAQAVPN 149



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C  VCP D  F + E  ++ +  +C+ CG+C   CP  A +
Sbjct: 939 CMSC--LACFRVCPFDSPFIDEEGHISHNEVKCMGCGICAGVCPAKAFQ 985


>gi|20806703|ref|NP_621874.1| uncharacterized Fe-S center protein [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515157|gb|AAM23478.1| uncharacterized Fe-S center protein [Thermoanaerobacter
           tengcongensis MB4]
          Length = 372

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C+   C+  CPV           I    CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTACQM--CIRNCPVGAISLVNGSAYIDHSICIGCGECVSMCQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFIERMTEYA 258


>gi|282856353|ref|ZP_06265632.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
 gi|282585724|gb|EFB91013.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
          Length = 649

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI CK   C+   CP   F   E    I P +C+ C VC   CP  AI
Sbjct: 595 KKCIGCKK--CLSTGCPALSFDTRERKAVIDPMQCVGCTVCAQVCPRQAI 642


>gi|265750369|ref|ZP_06086432.1| F420H2:quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
 gi|263237265|gb|EEZ22715.1| F420H2:quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 18 VEVCPVDCFY---EGENFL--AIHPDECIDCGVCEPECPV 52
          ++ CP  C     + E FL   +   +CIDCG+CE  CP+
Sbjct: 1  MQKCPRQCISLHEDTEGFLYPVVDKGDCIDCGLCEKVCPL 40


>gi|302877710|ref|YP_003846274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gallionella capsiferriformans ES-2]
 gi|302580499|gb|ADL54510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 84

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|240136885|ref|YP_002961352.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium
           extorquens AM1]
 gi|240006849|gb|ACS38075.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium
           extorquens AM1]
          Length = 941

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + C+    CE  CP
Sbjct: 765 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCP 808


>gi|239623412|ref|ZP_04666443.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522378|gb|EEQ62244.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 241

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPE--CPVDAI 55
          E CI C    C + C + C       ++I+ +EC+DCGVC     C  DAI
Sbjct: 8  EKCIGCGR--CTDYCMLGCITRDGKKVSINEEECVDCGVCLRAGVCAADAI 56


>gi|258406380|ref|YP_003199122.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257798607|gb|ACV69544.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 807

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI C+   C  VCP       E  +   P  C  CG+C   CP  A
Sbjct: 598 ETCIQCRM--CETVCPHGAIRLTEEGMVADPAFCQACGLCAAACPTHA 643


>gi|289828862|ref|ZP_06546605.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 220

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|261341169|ref|ZP_05969027.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316464|gb|EFC55402.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           +   E C+ C    C ++CP       +   +++ D  C  CG+CE  CP  A+    EP
Sbjct: 62  FFHAERCLHCGQ--CAQLCPTGLHSWQDGLHSLNRDRSCTGCGLCEERCPAAALNVVGEP 119


>gi|224418131|ref|ZP_03656137.1| ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|253827458|ref|ZP_04870343.1| ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313141666|ref|ZP_07803859.1| 4Fe-4S ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|253510864|gb|EES89523.1| ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313130697|gb|EFR48314.1| 4Fe-4S ferredoxin [Helicobacter canadensis MIT 98-5491]
          Length = 83

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEECIACDA--CREECPNEAIDEGDPYYIIDPELCTECYGFYDEPACLSVCPVDA 58

Query: 55 I--KPDTEPGLE 64
          I   PD    LE
Sbjct: 59 IVSDPDNIESLE 70


>gi|163752219|ref|ZP_02159421.1| hypothetical protein KT99_10608 [Shewanella benthica KT99]
 gi|161327900|gb|EDP99078.1| hypothetical protein KT99_10608 [Shewanella benthica KT99]
          Length = 697

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 12  CKHTD---CVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C H D   C++ CP   + +   + A+   P+ C  CG C   CP +A + D   G
Sbjct: 172 CNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLDPVKG 227


>gi|134096059|ref|YP_001101134.1| 4Fe-4S ferredoxin-type protein [Herminiimonas arsenicoxydans]
 gi|133739962|emb|CAL63013.1| Ferredoxin [Herminiimonas arsenicoxydans]
          Length = 87

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|86157468|ref|YP_464253.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773979|gb|ABC80816.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 100

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 20/111 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M   +TE CI C    C   CP     +G++   I+PD C +C        C   CPVD 
Sbjct: 1   MATFITEECINCGA--CEPECPNSAISQGDDIYVINPDLCTECVGFHGEEACAAVCPVDC 58

Query: 55  IKPD---TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
             PD   TE   + + K+    AT  P+ T      PS  ++     ++ K
Sbjct: 59  CVPDPNRTETEEQNYAKL----ATIHPDKT-----FPSLGELTAELSRFRK 100


>gi|26249119|ref|NP_755159.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           CFT073]
 gi|91212080|ref|YP_542066.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UTI89]
 gi|117624952|ref|YP_853940.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           APEC O1]
 gi|170765966|ref|ZP_02900777.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627]
 gi|218690844|ref|YP_002399056.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           ED1a]
 gi|227888258|ref|ZP_04006063.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           83972]
 gi|237706657|ref|ZP_04537138.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA]
 gi|300976820|ref|ZP_07173637.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1]
 gi|301049523|ref|ZP_07196481.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1]
 gi|306812402|ref|ZP_07446600.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           NC101]
 gi|331658828|ref|ZP_08359770.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA206]
 gi|26109526|gb|AAN81729.1|AE016765_131 Formate hydrogenlyase subunit 6 [Escherichia coli CFT073]
 gi|91073654|gb|ABE08535.1| formate hydrogenlyase subunit 6 [Escherichia coli UTI89]
 gi|115514076|gb|ABJ02151.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           APEC O1]
 gi|170125112|gb|EDS94043.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627]
 gi|218428408|emb|CAR09333.2| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           ED1a]
 gi|226899697|gb|EEH85956.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA]
 gi|227834527|gb|EEJ44993.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           83972]
 gi|294491620|gb|ADE90376.1| formate hydrogenlyase, subunit F [Escherichia coli IHE3034]
 gi|300298754|gb|EFJ55139.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1]
 gi|300410006|gb|EFJ93544.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1]
 gi|305854440|gb|EFM54878.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           NC101]
 gi|307554695|gb|ADN47470.1| formate hydrogenlyase subunit 6 [Escherichia coli ABU 83972]
 gi|307625709|gb|ADN70013.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UM146]
 gi|315289283|gb|EFU48678.1| hydrogenase 4 subunit H [Escherichia coli MS 110-3]
 gi|315293723|gb|EFU53075.1| hydrogenase 4 subunit H [Escherichia coli MS 153-1]
 gi|320194858|gb|EFW69487.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli WV_060327]
 gi|323188866|gb|EFZ74151.1| formate hydrogenlyase subunit 6 [Escherichia coli RN587/1]
 gi|323951061|gb|EGB46937.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957068|gb|EGB52793.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|331053410|gb|EGI25439.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA206]
          Length = 180

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE         CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFDLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|325959018|ref|YP_004290484.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330450|gb|ADZ09512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 252

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
           LAI  D C+ CG+CE  CPV+AIK
Sbjct: 194 LAIDEDICVACGMCEENCPVEAIK 217


>gi|284042623|ref|YP_003392963.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM
           14684]
 gi|283946844|gb|ADB49588.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM
           14684]
          Length = 177

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENFLAIHP---DECIDCGVCEPEC 50
           E C+ C  + C   CP DC                GE + A++      CI CG CE  C
Sbjct: 77  EKCVGC--SLCAAACPADCIRVVAAENTPEHRVSAGERYAAVYEINLSRCIFCGYCEVAC 134

Query: 51  PVDAI 55
           P DAI
Sbjct: 135 PFDAI 139


>gi|254558744|ref|YP_003065839.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
 gi|254266022|emb|CAX21772.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium
           extorquens DM4]
          Length = 936

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECP 51
           C+ C+H  C  VCPV    ++GE       + C+    CE  CP
Sbjct: 760 CMHCEHAPCEPVCPVAASVHDGEGLNLQVYNRCVGTRFCEANCP 803


>gi|288573617|ref|ZP_06391974.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569358|gb|EFC90915.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 586

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-----KP 57
           Y V  +C  C    CV  CPV              D C+ CG C   CPV A      +P
Sbjct: 14  YTVKNDCQDC--YKCVRACPVKAIKIENGHAQEISDHCVLCGRCVEICPVGAKRIRDDRP 71

Query: 58  DTE----PGLELWLKINSEYATQWPNITTKK 84
           + E     G  +++ I   +  ++P+++  K
Sbjct: 72  EAERLLRSGKPVYVSIAPSWVGEFPDVSPGK 102


>gi|169335425|ref|ZP_02862618.1| hypothetical protein ANASTE_01837 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258163|gb|EDS72129.1| hypothetical protein ANASTE_01837 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 114

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          + C+H D   C++ C      + +  ++++ ++CI C  C   CP  A+ PD E G+
Sbjct: 26 VSCRHCDDAICLKSCISGALTKKDGLISVNKEKCIGCLTCVLVCPYGAVHPDEENGV 82


>gi|160935281|ref|ZP_02082663.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441639|gb|EDP19339.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
          Length = 507

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 13/109 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--- 59
           V +   I+ +   C   C +D     EN  A I  D+C+ CG+C   CP  AI   +   
Sbjct: 163 VCSYKAIIIQERPCAAACGMDAISTDENGKADIDYDKCVSCGMCLVNCPFGAIADKSQIF 222

Query: 60  ------EPGLELWLKINSEYATQW-PNITTKKESLPSAAKMDGVKQKYE 101
                 + G  ++  +   +  Q+ P +T  K  L +A K  G    +E
Sbjct: 223 QVIRAIQSGERVYAAVAPAFVGQFGPKVTPGK--LRAAMKALGFADVFE 269


>gi|103486787|ref|YP_616348.1| NADH dehydrogenase subunit I [Sphingopyxis alaskensis RB2256]
 gi|123379893|sp|Q1GTK7|NUOI_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|98976864|gb|ABF53015.1| NADH-quinone oxidoreductase, chain I [Sphingopyxis alaskensis
           RB2256]
          Length = 162

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 23/104 (22%)

Query: 7   ENCILCKHTDCV--------EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI CK  + V        E  P D          I   +CI CG C+  CPVDAI   
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 120

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
                      N EYAT+     T++E L   AK+     K+E+
Sbjct: 121 P----------NFEYATE-----TREELLYDKAKLLANGDKWER 149


>gi|283785102|ref|YP_003364967.1| oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
 gi|282948556|emb|CBG88146.1| putative oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
          Length = 222

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP--VDAIKP 57
           + +   ++C  C+   C+EVCP    +  E   + +    CI CG C   CP  V  + P
Sbjct: 84  LYHFFRQSCQHCEDAPCIEVCPTGASWRDERGIVRVDGSRCIGCGYCIGACPYQVRYLHP 143

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
            ++   +      S  A  +P I     S P  A + G
Sbjct: 144 QSKVADKCDFCAESRLAKGFPPICV--SSCPEQALLFG 179


>gi|264676947|ref|YP_003276853.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          CNB-2]
 gi|262207459|gb|ACY31557.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          CNB-2]
          Length = 86

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|302517468|ref|ZP_07269810.1| formate dehydrogenase, beta subunit [Streptomyces sp. SPB78]
 gi|302426363|gb|EFK98178.1| formate dehydrogenase, beta subunit [Streptomyces sp. SPB78]
          Length = 315

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 126 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIE 177


>gi|268678907|ref|YP_003303338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616938|gb|ACZ11303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 190

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           ++C+ C++T CV VCP    ++ E+  + +  D C+ C  C   CP  A
Sbjct: 58  QSCVHCENTPCVNVCPTHASFKNEDGIVLVDVDLCVGCLYCVAACPYQA 106


>gi|237730860|ref|ZP_04561341.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
 gi|226906399|gb|EEH92317.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           + G
Sbjct: 119 DKG 121


>gi|170726214|ref|YP_001760240.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169811561|gb|ACA86145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 682

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 12  CKHTD---CVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           C H D   C++ CP   + +   + A+   P+ C  CG C   CP +A  P  +P
Sbjct: 168 CNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNA--PQLDP 220


>gi|222054450|ref|YP_002536812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563739|gb|ACM19711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 251

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 20/97 (20%)

Query: 9   CILCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD- 58
           C+ C    CV  CPV         +    G   + ++  +CI CG C P CP  A   D 
Sbjct: 80  CMQCDKPPCVAACPVKGPDGATWKETKGIGNGIVPVNYAKCIGCGNCVPACPYQARTMDD 139

Query: 59  ------TEPGLELWLKINS-EYATQWPNITTKKESLP 88
                   P L+++  + + EY  +WP    K+ +LP
Sbjct: 140 GSFHTAGTPQLQVYETLPAFEYGKKWPR---KENTLP 173


>gi|52549383|gb|AAU83232.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27A8]
          Length = 642

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           C E+C VD          I  D+C+ CG C   CP +A   + E G  +W+  N
Sbjct: 527 CAELCRVDAISIVLGKAVIDKDKCVTCGWCIRGCPSEA-AIEKERGYAMWIGAN 579


>gi|82617263|emb|CAI64169.1| carbon monoxide dehydrogenase/acetyl-CoA synthase like protein,
           alpha subunit [uncultured archaeon]
 gi|268322996|emb|CBH36584.1| carbon monoxide dehydrogenase/acetyl-CoA synthase like protein,
           alpha subunit [uncultured archaeon]
          Length = 818

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 12  CKHTD-CVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C   D C+EVCP    +    +  + LA   D CI CG+CE  CP
Sbjct: 417 CNSCDLCIEVCPNKQTISKAMDDVSALADIYDNCIFCGLCEKACP 461


>gi|82617151|emb|CAI64058.1| carbon monoxide dehydrogenase/acetyl-CoA synthase like protein,
           alpha subunit [uncultured archaeon]
          Length = 818

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 12  CKHTD-CVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C   D C+EVCP    +    +  + LA   D CI CG+CE  CP
Sbjct: 417 CNSCDLCIEVCPNKQTISKAMDDVSALADIYDNCIFCGLCEKACP 461


>gi|327311101|ref|YP_004337998.1| Fe-S-cluster-containing hydrogenase components 1 [Thermoproteus
           uzoniensis 768-20]
 gi|326947580|gb|AEA12686.1| Fe-S-cluster-containing hydrogenase components 1 [Thermoproteus
           uzoniensis 768-20]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           M Y++   C  C++  CV VCP    Y+ ++ L  I+ D CI C  C   CP DA
Sbjct: 57  MLYLL--QCQHCENPPCVTVCPTGASYKDKDGLVKINYDLCIGCRYCMVACPYDA 109


>gi|320538846|ref|ZP_08038522.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
 gi|320031006|gb|EFW13009.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
          Length = 190

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 107 VAYIDEANCIGC--TKCIQACPVDAIVGATGAMHTVIADLCTGCDLCVAPCPTDCIE 161


>gi|319943295|ref|ZP_08017578.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC
           51599]
 gi|319743837|gb|EFV96241.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           +CI C  T C+  CPVD       F   +  D C  C +C P CP D I 
Sbjct: 92  HCIGC--TKCILACPVDAIVGAPRFQHQVLTDRCTGCELCLPPCPTDCIS 139


>gi|310826460|ref|YP_003958817.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
 gi|308738194|gb|ADO35854.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
          Length = 452

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+  + C+ C  T C+  CP       E    I   +CIDCG C   CP  A    T+P
Sbjct: 8  VYLDKDKCLGC--TTCLRSCPTGAIRVREGKAKIIESKCIDCGECIRVCPHHAKMAKTDP 65


>gi|299531510|ref|ZP_07044916.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          S44]
 gi|298720473|gb|EFI61424.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          S44]
          Length = 86

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 7  DECINCDVCEPECPNDAI 24


>gi|261494021|ref|ZP_05990524.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496220|ref|ZP_05992626.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308172|gb|EEY09469.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310187|gb|EEY11387.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + +V+ + CI C  T C++ CPVD        +  I PD C  C +C   CP + I+
Sbjct: 108 VAFVIEDLCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNCIE 162


>gi|255322915|ref|ZP_05364055.1| sulfur reductase FeS subunit [Campylobacter showae RM3277]
 gi|255300027|gb|EET79304.1| sulfur reductase FeS subunit [Campylobacter showae RM3277]
          Length = 189

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDT 59
            +C++C+   CV VCP    F   E  + +    C+ C  C   CP DA  ++P T
Sbjct: 57  HSCVMCEDAPCVTVCPTGASFQTAEGIVLLDHSTCVSCKYCILACPYDARYVEPKT 112


>gi|291613334|ref|YP_003523491.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583446|gb|ADE11104.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 430

 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 17  CVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CV  CP        G+  L I+P  CI  G CE  CP DAIK
Sbjct: 63  CVAACPEGALGMINGKGTL-INPTVCIGHGACEAACPHDAIK 103


>gi|237733888|ref|ZP_04564369.1| aldo/keto reductase [Mollicutes bacterium D7]
 gi|229382969|gb|EEO33060.1| aldo/keto reductase [Coprobacillus sp. D7]
          Length = 382

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 18/65 (27%)

Query: 8   NCILCKH----TDCVEVCPVD-----CFYEGE---------NFLAIHPDECIDCGVCEPE 49
           NC+ C H      C+ +  V+     C  +GE           LA H  ECI+CGVC   
Sbjct: 303 NCVYCGHCAPCVKCINIADVNKFADLCVAQGEVPETVREHYEVLAHHASECIECGVCIKN 362

Query: 50  CPVDA 54
           CP + 
Sbjct: 363 CPFNV 367


>gi|121535425|ref|ZP_01667236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306024|gb|EAX46955.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 191

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA--IKPDT 59
           ++C++C ++ CV VCP    Y  ++ +  I   +C+ C  C   CP  A  I P T
Sbjct: 60  QSCVMCDNSPCVSVCPTGASYTNKDGVNLIDEKKCVGCKYCVTACPYQARFINPKT 115


>gi|119774966|ref|YP_927706.1| electron transport complex protein RnfB [Shewanella amazonensis
           SB2B]
 gi|166225085|sp|A1S6N0|RNFB_SHEAM RecName: Full=Electron transport complex protein rnfB
 gi|119767466|gb|ABM00037.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 189

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD     G+    +   +C  C +C   CPVD I
Sbjct: 106 VAYIREDECIGC--TKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCI 159


>gi|323475168|gb|ADX85774.1| ABC transporter related protein [Sulfolobus islandicus REY15A]
 gi|323477900|gb|ADX83138.1| ABC transporter related protein [Sulfolobus islandicus HVE10/4]
          Length = 602

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 21 ECINFCPVD--RSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAI 68


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y + + CI C  T C  VCPV+C   + +    I    CI CG C   C   AI
Sbjct: 539 LQYSINDKCIGC--TACARVCPVNCIAGKVKEKHVIDQSVCIKCGACYSTCKFGAI 592


>gi|300853896|ref|YP_003778880.1| putative Fe-S-cluster-containing hydrogenase components 2
           [Clostridium ljungdahlii DSM 13528]
 gi|300434011|gb|ADK13778.1| predicted Fe-S-cluster-containing hydrogenase components 2
           [Clostridium ljungdahlii DSM 13528]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C + CPV+       +++++ D C+ C +C   CP  AI+
Sbjct: 60  CRQCEDAPCGKACPVNAISNENGYVSVNKDVCVGCKICMLACPFGAIE 107


>gi|284998328|ref|YP_003420096.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5]
 gi|284446224|gb|ADB87726.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5]
          Length = 602

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 21 ECINFCPVD--RSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAI 68


>gi|242398680|ref|YP_002994104.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
 gi|242265073|gb|ACS89755.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
          Length = 295

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +E CI C    C E CP DC    +    ++   C  CGVC   CPV+ +    E    +
Sbjct: 68  SETCIKCGI--CAERCPYDCIKILDENYVVNELTCEGCGVCRLVCPVNGVITLEEVRSGV 125

Query: 66  WLKINSEYATQWPNITTKKE-SLPSAAKMDGVKQKYEKYFSPNPG 109
             K  ++Y   +P I+ + +   P++ K+   ++++ K      G
Sbjct: 126 IRKTTTKYG--FPLISAQLDVGRPNSGKLVTEEKEWAKRIMKEKG 168


>gi|229581623|ref|YP_002840022.1| putative ATPase RIL [Sulfolobus islandicus Y.N.15.51]
 gi|228012339|gb|ACP48100.1| ABC transporter related [Sulfolobus islandicus Y.N.15.51]
          Length = 602

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 21 ECINFCPVD--RSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAI 68


>gi|229579709|ref|YP_002838108.1| ATPase RIL [Sulfolobus islandicus Y.G.57.14]
 gi|228010424|gb|ACP46186.1| ABC transporter related [Sulfolobus islandicus Y.G.57.14]
          Length = 602

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 21 ECINFCPVD--RSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAI 68


>gi|227828106|ref|YP_002829886.1| ATPase RIL [Sulfolobus islandicus M.14.25]
 gi|238620306|ref|YP_002915132.1| putative ATPase RIL [Sulfolobus islandicus M.16.4]
 gi|227459902|gb|ACP38588.1| ABC transporter related [Sulfolobus islandicus M.14.25]
 gi|238381376|gb|ACR42464.1| ABC transporter related [Sulfolobus islandicus M.16.4]
          Length = 602

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 21 ECINFCPVD--RSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAI 68


>gi|227830813|ref|YP_002832593.1| ATPase RIL [Sulfolobus islandicus L.S.2.15]
 gi|227457261|gb|ACP35948.1| ABC transporter related [Sulfolobus islandicus L.S.2.15]
          Length = 600

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 19 ECINFCPVD--RSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAI 66


>gi|161503521|ref|YP_001570633.1| hypothetical protein SARI_01597 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864868|gb|ABX21491.1| hypothetical protein SARI_01597 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 250

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 105 LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 152


>gi|148643520|ref|YP_001274033.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552537|gb|ABQ87665.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
          Length = 412

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           +CI CK   CVE+CP D      N L I  P  C  CG+CE  C V+AI
Sbjct: 213 SCIGCK--TCVEICPGDFIKFNTNNLTITLPKMCAACGLCEKMCSVNAI 259


>gi|154414924|ref|XP_001580488.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
 gi|121914706|gb|EAY19502.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
          Length = 1103

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 15/86 (17%)

Query: 34  AIHPDECIDCGVCEPECPVDA-IKPDTEPGL--------------ELWLKINSEYATQWP 78
           +++ ++CI CG+C   CP DA I   + P L                ++KINS+  +++ 
Sbjct: 157 SLNDNDCIQCGMCTTVCPTDALIHNSSVPQLIKAISSGKTMILQISPFVKINSDTHSKYL 216

Query: 79  NITTKKESLPSAAKMDGVKQKYEKYF 104
                 E +  AA++ G +  +++ F
Sbjct: 217 TNQVSVEKIIGAARIMGFRYVFDQKF 242


>gi|119476464|ref|ZP_01616815.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
 gi|119450328|gb|EAW31563.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
          Length = 201

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 113 VAYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCI 166


>gi|77918675|ref|YP_356490.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77544758|gb|ABA88320.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 417

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 17  CVEVCPVDC---FYEGENFLAIHPDE--CIDCGVCEPECPVDAIK 56
           C  VCP      F E  +   +  D   C+DCG C+  CPV+A K
Sbjct: 327 CQLVCPFGWYAWFLEKISLTGVRIDSQICVDCGACDRACPVEAAK 371


>gi|33601102|ref|NP_888662.1| putative iron-sulfur binding protein [Bordetella bronchiseptica
           RB50]
 gi|33575537|emb|CAE32615.1| putative iron-sulfur binding protein [Bordetella bronchiseptica
           RB50]
          Length = 705

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V ++ C LC    CV  CP +   +      L +    C+ CG+C   CP +AI
Sbjct: 571 VDSDACTLC--MSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAI 622


>gi|117920783|ref|YP_869975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|146294906|ref|YP_001185330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|33286385|gb|AAQ01673.1| ArrB [Shewanella sp. ANA-3]
 gi|117613115|gb|ABK48569.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
 gi|145566596|gb|ABP77531.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 234

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 2   TYVVTENCILCKHTD---CVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKP 57
           TY+ T    LC H D   CV+VCP    ++ +  L +   DECI C  C   CP   I  
Sbjct: 51  TYIPT----LCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISF 106

Query: 58  DTEPGLELW 66
           +       W
Sbjct: 107 NAATPHRRW 115


>gi|325958226|ref|YP_004289692.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329658|gb|ADZ08720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 156

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           C  +CP +   E +  L +  D CI C +C   CPV  +  D E           + +TQ
Sbjct: 51  CARICPTNAIKEEDGVLMVDEDACILCRLCMISCPVGMMVMDLE-----------KKSTQ 99

Query: 77  WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
              +  +KE     A ++  K    K FS
Sbjct: 100 KCTLCFEKEDRILPACVEACKDNVLKVFS 128


>gi|309388392|gb|ADO76272.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
          praevalens DSM 2228]
 gi|309389792|gb|ADO77672.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
          praevalens DSM 2228]
          Length = 418

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  +  + C+ C    CV  CP D      +   +  ++C  CG+C  +C  DA++ D E
Sbjct: 1  MLNIFEDKCVGCGV--CVTSCPFDALKMENDIAVVDTEKCTMCGICVKKCNFDAMEIDKE 58


>gi|301353399|ref|YP_003795632.1| photosystem I subunit VII [Pteridium aquilinum subsp. aquilinum]
 gi|301016317|gb|ADK47604.1| photosystem I subunit VII [Pteridium aquilinum subsp. aquilinum]
          Length = 81

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 5  VTENCILCKHTDCVEVCPVDCF----YEG--ENFLAIHP--DECIDCGVCEPECPVDAIK 56
          + + CI C  T CV  CP D      ++G   N +A  P  ++C+ C  CE  CP D + 
Sbjct: 7  IYDTCIGC--TQCVRACPTDVLEMIPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 57 PDTEPGLELWLKINSEY 73
              PG E    +   Y
Sbjct: 65 VRVYPGAETTRSMGLGY 81


>gi|240103186|ref|YP_002959495.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910740|gb|ACS33631.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 658

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 26/57 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + C  CK    +  CP   +    N + I    C  CGVC   CP DAIK  +E
Sbjct: 597 VIEDKCTGCKACILLTGCPALVYDPETNKVRIDSLLCTGCGVCNQTCPFDAIKFPSE 653


>gi|239905934|ref|YP_002952673.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
 gi|239795798|dbj|BAH74787.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
          Length = 421

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C+  CP    Y   GE     H + CI+CG C   CPV AI
Sbjct: 33 SKCIGCD--SCMGYCPTGAIYGETGEPHKIPHVEACINCGQCLTHCPVSAI 81


>gi|254478137|ref|ZP_05091520.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|214035999|gb|EEB76690.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 203

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          VV + C  C+   C+  CPV           I    CI CG C   C    IKP     +
Sbjct: 21 VVGKGCTACQM--CIRNCPVGAISLVNGSAYIDHSICIGCGECVSMCQYGVIKPQWGTDM 78

Query: 64 ELWLKINSEYA 74
          + +++  +EYA
Sbjct: 79 DAFIERMTEYA 89


>gi|189191492|ref|XP_001932085.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973691|gb|EDU41190.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 230

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 27/105 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI 
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAIV 186

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                        N+EYAT+     T++E L +  K+     K+E
Sbjct: 187 EGP----------NAEYATE-----TREELLYNKEKLLANGDKWE 216


>gi|156934229|ref|YP_001438145.1| electron transport protein HydN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532483|gb|ABU77309.1| hypothetical protein ESA_02059 [Cronobacter sakazakii ATCC BAA-894]
          Length = 182

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++    P
Sbjct: 59  CRQCEDAPCASVCPNGAITRDNDFVHVHQQRCIGCKTCVVACPYGAMEVVVRP 111


>gi|187477591|ref|YP_785615.1| ferredoxin [Bordetella avium 197N]
 gi|115422177|emb|CAJ48701.1| ferredoxin [Bordetella avium 197N]
          Length = 213

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +CI C  T C+  CPVD        +  +  D C  C +C   CPVD I  D  P    W
Sbjct: 84  HCIGC--TLCIRACPVDAIAGANKRMHTVLADLCSGCDLCVAPCPVDCI--DMVPAGRDW 139

Query: 67  LKINSEYATQ 76
              ++  A Q
Sbjct: 140 TASDASAARQ 149


>gi|325960196|ref|YP_004291662.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325331628|gb|ADZ10690.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 771

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +I PD CI CG C   CPVDAI  +++
Sbjct: 283 FSIDPDACIKCGKCVEACPVDAINLESK 310


>gi|293392063|ref|ZP_06636397.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|290952597|gb|EFE02716.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 199

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ILC+H D   C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 49 ILCRHCDDSPCATVCPVHAITHEGDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|187932399|ref|YP_001886496.1| iron hydrogenase 1 [Clostridium botulinum B str. Eklund 17B]
 gi|187720552|gb|ACD21773.1| iron hydrogenase 1 [Clostridium botulinum B str. Eklund 17B]
          Length = 565

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 18/69 (26%)

Query: 9   CILCKHTDCVEVC-------PVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDA 54
           CILC   DCV +C        +D  Y G N +        +   +C++CG C   CP  A
Sbjct: 146 CILC--GDCVRMCNEIQNVGAIDFAYRGSNMVVSPAFGKCLGETDCVNCGQCANVCPTGA 203

Query: 55  I--KPDTEP 61
           I  K D +P
Sbjct: 204 IVVKSDVKP 212


>gi|320156811|ref|YP_004189190.1| NrfC protein [Vibrio vulnificus MO6-24/O]
 gi|319932123|gb|ADV86987.1| NrfC protein [Vibrio vulnificus MO6-24/O]
          Length = 228

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACP 143


>gi|76803114|ref|YP_331209.1| iron-sulfur binding protein, ferredoxin-like [Natronomonas
           pharaonis DSM 2160]
 gi|76558979|emb|CAI50576.1| iron-sulfur binding protein, ferredoxin-like [Natronomonas
           pharaonis DSM 2160]
          Length = 714

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E C L     C   CP D      + L  + + C++CG+C   C  D I  D   GL+
Sbjct: 582 VAEGCTLTP--TCSRFCPTDALRRTGSGLEFNHERCVNCGLCADVCVEDVITVDA--GLD 637

Query: 65  LWL 67
           L L
Sbjct: 638 LGL 640


>gi|325960232|ref|YP_004291698.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325331664|gb|ADZ10726.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 347

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP +                  + I  + CIDCG+CE  CP DAI 
Sbjct: 114 ETCIYCKA--CERACPREAITVARQLPDRSKLVTGEIDIDKETCIDCGICEEMCPADAIT 171

Query: 57  PD 58
            D
Sbjct: 172 ID 173


>gi|321455606|gb|EFX66734.1| hypothetical protein DAPPUDRAFT_189585 [Daphnia pulex]
          Length = 610

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           C+EV P D          I    CI CG+C  +CP +AI     P       ++S+   +
Sbjct: 48  CIEVAPTD------RIAVISETLCIGCGICVKKCPFEAITIINLPS-----NLDSQVTHR 96

Query: 77  WPNITTKKESLPS 89
           +   + K   LP+
Sbjct: 97  YSQNSFKLHRLPT 109


>gi|312129873|ref|YP_003997213.1| 4fe-4S ferredoxin iroN-sulfur binding domain protein
          [Leadbetterella byssophila DSM 17132]
 gi|311906419|gb|ADQ16860.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Leadbetterella byssophila DSM 17132]
          Length = 115

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          I  DECI+CG CEPECP +AI    E G+E
Sbjct: 4  IITDECINCGACEPECPNNAIY---EGGME 30


>gi|312880734|ref|ZP_07740534.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784025|gb|EFQ24423.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 271

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CV+ CP D  +   N   I PD+C  C +C  +CP  AI
Sbjct: 224 CVKACPNDAVHVENNLARIDPDKCTQCCLCVDKCPTKAI 262


>gi|261868396|ref|YP_003256318.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261413728|gb|ACX83099.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 199

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ILC+H D   C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 49 ILCRHCDDSPCATVCPVHAITHEGDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|220933486|ref|YP_002512385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994796|gb|ACL71398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. HL-EbGR7]
          Length = 84

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI P  E
Sbjct: 7  DECINCDVCEPECPNGAISPGDE 29


>gi|149912039|ref|ZP_01900632.1| Electron transport complex protein rnfB [Moritella sp. PE36]
 gi|149804900|gb|EDM64935.1| Electron transport complex protein rnfB [Moritella sp. PE36]
          Length = 182

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           +  ++ E+CI C  T C++ CPVD        +  +  D C  C +C   CP D I    
Sbjct: 107 VARIIEEDCIGC--TKCIQACPVDAIAGATRAMHTVIVDSCTGCKLCVAPCPTDCIV--M 162

Query: 60  EPGLELW 66
           EP    W
Sbjct: 163 EPVQAAW 169


>gi|91092422|ref|XP_968009.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Tribolium
          castaneum]
 gi|270004744|gb|EFA01192.1| hypothetical protein TcasGA2_TC010519 [Tribolium castaneum]
          Length = 608

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+EV P           AI  + CI CG+C  +CP +AI
Sbjct: 46 CIEVTP------NSKMAAISEELCIGCGICVKKCPFEAI 78


>gi|29345451|ref|NP_808954.1| F420H2:quinone oxidoreductase [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|298481942|ref|ZP_07000131.1| F420H2:quinone oxidoreductase [Bacteroides sp. D22]
 gi|29337343|gb|AAO75148.1| F420H2:quinone oxidoreductase [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|298271806|gb|EFI13378.1| F420H2:quinone oxidoreductase [Bacteroides sp. D22]
          Length = 400

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 17 CVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
          CV  CP+ C       EG  +  +    CIDCG CE  CP + ++     G+ ++  +N
Sbjct: 16 CVSSCPLQCIELVKDKEGFMYPQVDTARCIDCGKCEKACP-ELVEAKGSGGVTVYAAVN 73


>gi|16760525|ref|NP_456142.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764735|ref|NP_460350.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29141714|ref|NP_805056.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|207857109|ref|YP_002243760.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584104|ref|YP_002637902.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|4456871|emb|CAB37414.1| tetrathionate reductase subunit B (TtrB) [Salmonella typhimurium]
 gi|11139591|gb|AAG31757.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419905|gb|AAL20309.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16502821|emb|CAD01980.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137342|gb|AAO68905.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|206708912|emb|CAR33242.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468631|gb|ACN46461.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246591|emb|CBG24401.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993272|gb|ACY88157.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157920|emb|CBW17415.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323129656|gb|ADX17086.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623491|gb|EGE29836.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988272|gb|AEF07255.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 250

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 105 LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 152


>gi|332374474|gb|AEE62378.1| unknown [Dendroctonus ponderosae]
          Length = 609

 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+EV P            I  + CI CG+C  +CP DAI
Sbjct: 47 CIEVSP------NSKIAVISEELCIGCGICVKKCPFDAI 79


>gi|317484216|ref|ZP_07943145.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924565|gb|EFV45722.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 240

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    CV+ CP    Y+ E+  + +    CI CG C   CP  A   D
Sbjct: 57  CMHCDEPSCVDACPTHATYKAEDGVVMVDETRCIACGSCMRACPYQARHID 107


>gi|271501252|ref|YP_003334277.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270344807|gb|ACZ77572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 339

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +H D   C  C  C   CP D  K D E
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFDVPKYDYE 170


>gi|240172913|ref|ZP_04751572.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium kansasii
           ATCC 12478]
          Length = 293

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 113 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVI 163


>gi|164663359|ref|XP_001732801.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
 gi|159106704|gb|EDP45587.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
          Length = 245

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 19  EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           E  PV   + GE+ L  +P   + CI C +CE  CP  AI  ++EP ++
Sbjct: 122 EKGPVSPRFRGEHALRRYPTGEERCIACKLCEAICPALAITIESEPRMD 170


>gi|157145832|ref|YP_001453151.1| hypothetical protein CKO_01583 [Citrobacter koseri ATCC BAA-895]
 gi|157083037|gb|ABV12715.1| hypothetical protein CKO_01583 [Citrobacter koseri ATCC BAA-895]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
             G
Sbjct: 119 AKG 121


>gi|15678133|ref|NP_275248.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621136|gb|AAB84604.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 622

 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    C  VCP D     E+   I   +CI CG C   CPV
Sbjct: 170 CVFCG--TCEIVCPTDAIKIVEDHAEIDKTKCIMCGSCLAACPV 211


>gi|89896192|ref|YP_519679.1| hypothetical protein DSY3446 [Desulfitobacterium hafniense Y51]
 gi|219668017|ref|YP_002458452.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89335640|dbj|BAE85235.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538277|gb|ACL20016.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 239

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 18/86 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC--EPECPVDAIKPDTEPGLE 64
          E C+ C   +C+  CP+     G+    I+ DEC++CG+C  + ECPV+A     E    
Sbjct: 6  ELCLSCG--ECLPYCPMGAIEMGDT-AQINQDECVECGICIRQIECPVEAFYEPAE---- 58

Query: 65 LWLKINSEYATQWPNITTKKESLPSA 90
                      WP    K  S P+A
Sbjct: 59 ---------TMMWPRSLRKVFSDPTA 75


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +TY +  N C  C    CV  CPV       +    I+ D CI CG+C   C  DA+K
Sbjct: 560 LTYTIDPNECTSC--LACVRECPVGAISGPKKEPQVINQDLCIKCGLCHDVCQFDAVK 615


>gi|320196609|gb|EFW71232.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           WV_060327]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
             G
Sbjct: 119 TKG 121


>gi|297285975|ref|XP_002802906.1| PREDICTED: hypothetical protein LOC716487 [Macaca mulatta]
          Length = 360

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19  EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           E  P+   + GE+ L  +P   + CI C +CE  CP  AI  + EP
Sbjct: 249 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEP 294


>gi|188586666|ref|YP_001918211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351353|gb|ACB85623.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 149

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C +  C +VCPV           +  DECI CG C+  CP D I
Sbjct: 54  CNQCDNAFCEKVCPVSAIKRENGIPVVVQDECIGCGQCQKYCPRDVI 100


>gi|168243690|ref|ZP_02668622.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194450668|ref|YP_002048269.1| cytochrome c nitrite reductase Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200387438|ref|ZP_03214050.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|194408972|gb|ACF69191.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|199604536|gb|EDZ03081.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205337307|gb|EDZ24071.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|197251255|ref|YP_002149193.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214958|gb|ACH52355.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|218778244|ref|YP_002429562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759628|gb|ACL02094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 331

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C LC      +   +D   EG     ++ D+C+ CGVC+  CP DAI  D
Sbjct: 272 EECELCLERCVFKAIEMD---EGIGAAVVNADKCMGCGVCQVTCPADAIVLD 320


>gi|186475080|ref|YP_001856550.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia phymatum STM815]
 gi|184191539|gb|ACC69504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phymatum STM815]
          Length = 85

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|16767529|ref|NP_463144.1| formate-dependent nitrite reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991482|ref|ZP_02572581.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168466975|ref|ZP_02700823.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821264|ref|ZP_02833264.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197263392|ref|ZP_03163466.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|16422839|gb|AAL23103.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|195630636|gb|EDX49248.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241647|gb|EDY24267.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205330187|gb|EDZ16951.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205342069|gb|EDZ28833.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261249378|emb|CBG27241.1| cytochrome C-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996599|gb|ACY91484.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160771|emb|CBW20302.1| 4Fe-4S subunit, subunit of nitrite reductase complex [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312915383|dbj|BAJ39357.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088687|emb|CBY98445.1| Uncharacterized ferredoxin-like protein ydhX [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223150|gb|EFX48220.1| NrfC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132620|gb|ADX20050.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991095|gb|AEF10078.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|219666328|ref|YP_002456763.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536588|gb|ACL18327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 264

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP---DTEPGLE 64
           C  C H  CV VCP    +  E+  + +    CI C  C   CP  A      D +P L 
Sbjct: 121 CNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCMAACPYGARSFNYWDPKPHLA 180

Query: 65  LWLKINSEYATQWPNITTK 83
              KIN EY  +   +  K
Sbjct: 181 ---KINPEYPHRSKGVVEK 196


>gi|325281874|ref|YP_004254416.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
 gi|324313683|gb|ADY34236.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
          Length = 471

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C+   CV  CP           +I  ++C+ CG+C+  CP  AI
Sbjct: 112 YAVTNLCRGCEGRPCVMNCPKAAISFIGGKASISSEDCVSCGLCQKVCPYHAI 164


>gi|323704595|ref|ZP_08116173.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323536057|gb|EGB25830.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 289

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 19 EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E+  VD FY G+    I  ++CI CG+CE  C  DAI
Sbjct: 48 EIQKVDNFY-GKEVALIDEEKCIKCGLCETLCRFDAI 83


>gi|310780235|ref|YP_003968567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309749558|gb|ADO84219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 59

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + ++ CI C    C  VCPV C  E  +    I    CIDCG C   CPV+ I P
Sbjct: 1  MAYRINQSECIACGA--CEPVCPVSCISEVVDGKREIDESACIDCGACAGVCPVECIAP 57


>gi|296132288|ref|YP_003639535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296030866|gb|ADG81634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 297

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V   C+ C    CV VCP    ++ E+  + I  D CI C  C   CP      + E 
Sbjct: 102 YKVKMQCMHCNEPSCVAVCPTGAAFKREDGIVLIDGDVCIACRNCVVACPYAIPGENKES 161

Query: 62  GL 63
           G+
Sbjct: 162 GV 163


>gi|170290379|ref|YP_001737195.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174459|gb|ACB07512.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 648

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CVE CP       E    + P  C+ CG+C+  CP  AI+
Sbjct: 588 CVEECPFSAIVLEEGKAKVLPLACMGCGICQGACPTGAIE 627


>gi|167625917|ref|YP_001676211.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355939|gb|ABZ78552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 181

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ +C+ C++  C+ VCP   ++   +  + +  ++C  CG+C   CP  A+    + G
Sbjct: 57  LSHSCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYSAVSIREDDG 115


>gi|157148004|ref|YP_001455323.1| hypothetical protein CKO_03811 [Citrobacter koseri ATCC BAA-895]
 gi|157085209|gb|ABV14887.1| hypothetical protein CKO_03811 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|154498821|ref|ZP_02037199.1| hypothetical protein BACCAP_02812 [Bacteroides capillosus ATCC
           29799]
 gi|150272211|gb|EDM99415.1| hypothetical protein BACCAP_02812 [Bacteroides capillosus ATCC
           29799]
          Length = 316

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP-GLEL 65
           E C  CK     +VCP+      +  L+I  D C +CG C  +C  DA+   T    + +
Sbjct: 171 EECNGCKKCGVAQVCPMGAAKLEDGELSIDKDVCNNCGRCIDKCYFDAMDGGTFAYKIYI 230

Query: 66  WLKINSEYATQWP---NITTKKESL 87
             +     AT  P    ITTK+E+L
Sbjct: 231 GGRWGKRTATGRPLSKLITTKEEAL 255


>gi|15668758|ref|NP_247557.1| iron-sulfer cluster binding protein [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2494450|sp|Q57998|Y578_METJA RecName: Full=Uncharacterized protein MJ0578
 gi|1591285|gb|AAB98569.1| iron-sulfer cluster binding protein [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 276

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y + ++CI C    C++VC  D   +      I+P  C  CG CE  C  DAI+P
Sbjct: 69  IYEINDDCIRCGK--CLDVCQFDAIGD----FKINPILCEGCGACELICEFDAIEP 118


>gi|312143536|ref|YP_003994982.1| iron-sulfur protein [Halanaerobium sp. 'sapolanicus']
 gi|311904187|gb|ADQ14628.1| putative iron-sulfur protein [Halanaerobium sp. 'sapolanicus']
          Length = 420

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           +    C  C+   C+ +CPV+   E E+     + +  + C+ CGVC   CP + IK
Sbjct: 287 LTNNKCSQCQ--KCLSICPVNAISEIEDEEGKKIVVDKELCLGCGVCLRTCPENNIK 341


>gi|284921494|emb|CBG34565.1| putative anaerobic dimethyl sulfoxide reductase, Fe-S subunit
           [Escherichia coli 042]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    C +VCP    ++ E+ F+ +  + CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDENVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           E G
Sbjct: 119 EKG 121


>gi|212702956|ref|ZP_03311084.1| hypothetical protein DESPIG_00993 [Desulfovibrio piger ATCC 29098]
 gi|212673544|gb|EEB34027.1| hypothetical protein DESPIG_00993 [Desulfovibrio piger ATCC 29098]
          Length = 566

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 9   CILCKHTD----CVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C H      CVE CP     +  + E E    +H +EC  C  C   CP  AI
Sbjct: 501 CFHCGHCKACGTCVEDCPGYVLEMRPYQEAERPEMVHGEECWHCANCRTSCPCSAI 556


>gi|229815904|ref|ZP_04446228.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
 gi|229808599|gb|EEP44377.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
          Length = 421

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C +C    CVE CP   C       LAI P  CI CG+C   C   A+K     G EL
Sbjct: 320 DRCTMCGA--CVEACPTFACDLLNGGKLAIEPTYCIGCGLCAEVCSDHALKMVERDGSEL 377


>gi|168236981|ref|ZP_02662039.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734388|ref|YP_002117213.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194709890|gb|ACF89111.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290036|gb|EDY29395.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|148225889|ref|NP_001087331.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|51593201|gb|AAH78569.1| MGC85457 protein [Xenopus laevis]
          Length = 207

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 18  VEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
            E  P+   + GE+ L  +P   + CI C +CE  CP  AI  + EP
Sbjct: 83  FEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAACPAQAITIEAEP 129


>gi|56416077|ref|YP_153152.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161617418|ref|YP_001591383.1| hypothetical protein SPAB_05274 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168231287|ref|ZP_02656345.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470140|ref|ZP_03076124.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197365004|ref|YP_002144641.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|238912736|ref|ZP_04656573.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56130334|gb|AAV79840.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161366782|gb|ABX70550.1| hypothetical protein SPAB_05274 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456504|gb|EDX45343.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197096481|emb|CAR62088.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205334315|gb|EDZ21079.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|89893061|ref|YP_516548.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1
           precursor [Desulfitobacterium hafniense Y51]
 gi|89332509|dbj|BAE82104.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1
           precursor [Desulfitobacterium hafniense Y51]
          Length = 264

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 7/79 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP---DTEPGLE 64
           C  C H  CV VCP    +  E+  + +    CI C  C   CP  A      D +P L 
Sbjct: 121 CNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCMAACPYGARSFNYWDPKPHLA 180

Query: 65  LWLKINSEYATQWPNITTK 83
              KIN EY  +   +  K
Sbjct: 181 ---KINPEYPHRSKGVVEK 196


>gi|262402395|ref|ZP_06078956.1| NrfC protein [Vibrio sp. RC586]
 gi|262351177|gb|EEZ00310.1| NrfC protein [Vibrio sp. RC586]
          Length = 212

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H + C+ CG C   CP
Sbjct: 81  KSCQHCENPPCVYVCPTGAAYKDETTGIVDVHKERCVGCGYCIAACP 127


>gi|254821794|ref|ZP_05226795.1| hypothetical protein MintA_17812 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 76

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 15 TDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAI 55
          T CVEVCP+D        G+ F+  H DEC  CG C   CP  A+
Sbjct: 25 TLCVEVCPLDALAINPDTGKAFM--HVDECWYCGPCAARCPTGAV 67


>gi|261345710|ref|ZP_05973354.1| cytochrome c nitrite reductase, Fe-S protein [Providencia
           rustigianii DSM 4541]
 gi|282566197|gb|EFB71732.1| cytochrome c nitrite reductase, Fe-S protein [Providencia
           rustigianii DSM 4541]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            +C  C+H  CV+VCP    +  +    + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCEHAPCVDVCPTGASFIDKATGIVDVNPDLCVGCQYCIAACP 136


>gi|226324705|ref|ZP_03800223.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758]
 gi|225207153|gb|EEG89507.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758]
          Length = 263

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  V +  CI CK   C +VC  D  +  +N   I P++C +CG C  +CP   IK
Sbjct: 210 VMSVCSVGCIGCKM--CEKVCESDAVHVVDNIAHIDPEKCTNCGKCAEKCPKKIIK 263


>gi|225024698|ref|ZP_03713890.1| hypothetical protein EIKCOROL_01580 [Eikenella corrodens ATCC
          23834]
 gi|224942537|gb|EEG23746.1| hypothetical protein EIKCOROL_01580 [Eikenella corrodens ATCC
          23834]
          Length = 85

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 5/39 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
          DECI+C VCEPECP DAI      G E++ +I+ +  TQ
Sbjct: 7  DECINCDVCEPECPNDAIS----QGEEIY-EIDPDLCTQ 40


>gi|218559710|ref|YP_002392623.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           S88]
 gi|218366479|emb|CAR04231.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           S88]
          Length = 180

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE         CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFDLGRCIFCGRCEEFCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103


>gi|212710427|ref|ZP_03318555.1| hypothetical protein PROVALCAL_01489 [Providencia alcalifaciens
          DSM 30120]
 gi|212686847|gb|EEB46375.1| hypothetical protein PROVALCAL_01489 [Providencia alcalifaciens
          DSM 30120]
          Length = 187

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 10 ILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          +LC+  D   C  VCPV+        + ++   CI C +C   CP  AI P
Sbjct: 31 MLCRQCDDAPCARVCPVNAITHENGMIVLNESLCIGCKLCGLVCPFGAITP 81


>gi|212224715|ref|YP_002307951.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
 gi|212009672|gb|ACJ17054.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
          Length = 166

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           NC  C+   CVEVCP +  Y + +  + + P +CI C +C   CP         P L+L 
Sbjct: 47  NCRHCEKAPCVEVCPTNALYRDKDGAVLLAPQKCIGCLMCGIVCPFGI------PELDLI 100

Query: 67  LKINSE-----YATQWPNITTKKESLPSAAKMDG-----VKQKYEKY 103
            KI  +     +      +    E+ P+ A + G     VK++ EK+
Sbjct: 101 NKIMGKCDLCAHRRAEGKLPACVETCPTDALIYGDFNEIVKKRREKF 147


>gi|330889653|gb|EGH22314.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str.
          301020]
          Length = 153

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 31 ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 88

Query: 57 --PDTE 60
            PD E
Sbjct: 89 LTPDFE 94


>gi|330447721|ref|ZP_08311369.1| dimethylsulfoxide reductase, chain B [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491912|dbj|GAA05866.1| dimethylsulfoxide reductase, chain B [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y V+  C  C    C +VCP    ++   + F+ +  ++CI C  C   CP  A + +
Sbjct: 58  FSYYVSIACNHCTKPACTKVCPSGAMHKRKEDGFVVVDTEKCIGCQYCGMACPYGAPQYN 117

Query: 59  TEPG 62
            E G
Sbjct: 118 AEKG 121


>gi|323492677|ref|ZP_08097821.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323313052|gb|EGA66172.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 554

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    + +GE+  L     +CI CG+C   CP
Sbjct: 420 DCTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCTKACP 463


>gi|303327190|ref|ZP_07357632.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
          sp. 3_1_syn3]
 gi|302863178|gb|EFL86110.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
          sp. 3_1_syn3]
          Length = 297

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C   CP       +  LAI  D+C  CG+C   CP  A++
Sbjct: 59 SCASACPKGLIAMRDGSLAIERDQCDACGLCAAACPSTALR 99


>gi|269925977|ref|YP_003322600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789637|gb|ACZ41778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 270

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           ++++ C  C    C+E CP       E   + I PD C  CG C P CP
Sbjct: 86  MMSDVCKHCAVAGCLEACPTGAIIRTEFGTVYIQPDICNGCGYCVPACP 134


>gi|198241756|ref|YP_002218172.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197936272|gb|ACH73605.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326625971|gb|EGE32316.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|163800923|ref|ZP_02194823.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4]
 gi|159175272|gb|EDP60069.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4]
          Length = 553

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           ++ C LC    CV VCP    + +GE+  L     +CI CG+CE  CP + +
Sbjct: 417 SKGCTLC--MSCVAVCPTRALHTDGESPSLKFIEQDCIQCGLCEKACPENVL 466


>gi|297619219|ref|YP_003707324.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
 gi|297378196|gb|ADI36351.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
          Length = 293

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           DC + C  +     +N   +    C DCG+C   CPV+AI   T P
Sbjct: 75  DCAKYCNFNALAITKNSALVFEKLCHDCGLCYEVCPVNAISEITRP 120


>gi|148643469|ref|YP_001273982.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
 gi|89953728|gb|ABD83344.1| FwdF [Methanobrevibacter smithii]
 gi|148552486|gb|ABQ87614.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
          Length = 365

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENF----LAIHPDECIDCGVCEPECPVDAIK 56
           + CI CK   C   CP D         E +N     +++  D+C+ CG+C+  CP +AI 
Sbjct: 134 DKCIYCKR--CETACPQDAITVMRKLPERQNLVSGEISVSDDDCVYCGICQELCPAEAIV 191

Query: 57  PDTEPGLE 64
            D   G E
Sbjct: 192 VDNTTGQE 199


>gi|88601754|ref|YP_501932.1| 2-oxoacid:acceptor oxidoreductase subunit delta,
          pyruvate/2-ketoisovalerate [Methanospirillum hungatei
          JF-1]
 gi|88187216|gb|ABD40213.1| pyruvate ferredoxin oxidoreductase, delta subunit
          [Methanospirillum hungatei JF-1]
          Length = 85

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 21/44 (47%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  VCP  C   G+       D C  CG+C  ECP  AI  +TE
Sbjct: 40 CQLVCPEGCILTGDKQFNPDYDFCKGCGLCAQECPAKAITMETE 83


>gi|59711541|ref|YP_204317.1| electron transport complex protein RnfB [Vibrio fischeri ES114]
 gi|197334877|ref|YP_002155697.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
 gi|75507049|sp|Q5E6B7|RNFB_VIBF1 RecName: Full=Electron transport complex protein rnfB
 gi|226735435|sp|B5FCN4|RNFB_VIBFM RecName: Full=Electron transport complex protein rnfB
 gi|59479642|gb|AAW85429.1| predicted iron-sulfur protein (Rnf/Rsx reducing system) [Vibrio
           fischeri ES114]
 gi|197316367|gb|ACH65814.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
          Length = 194

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +   EC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIE 160


>gi|73532680|dbj|BAE19898.1| tetrathionate reductase subunit B [Edwardsiella tarda]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 20/125 (16%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA------- 54
           +++   C  C++  CV VCPV   Y+ ++  + +    C+ C  C   CP DA       
Sbjct: 55  FMLPRLCNHCENPPCVAVCPVQATYQRDDGIVMVDNRRCVGCAYCIQACPYDARFISQLT 114

Query: 55  --------IKPDTEPGLELWL-KINSEYAT---QWPNITTKKESLPSAAKMDGVKQKYEK 102
                   ++P    G+   L ++   + +    +P     ++    AA   G+ +K E+
Sbjct: 115 LTSHNMHILRPRCRGGVVARLRRVTRRWGSLRRLYPRSGQLRDPPAGAASGVGLCKKPEQ 174

Query: 103 YFSPN 107
           + +P 
Sbjct: 175 HAAPR 179


>gi|45358921|ref|NP_988478.1| ferredoxin [Methanococcus maripaludis S2]
 gi|45047787|emb|CAF30914.1| ferredoxin [Methanococcus maripaludis S2]
          Length = 132

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    CV  CPV      E F + +  DECI C  C   CPV+AIK
Sbjct: 80  EKCIDCGA--CVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICPVNAIK 128


>gi|15898912|ref|NP_343517.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|284173031|ref|ZP_06387000.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) protein [Sulfolobus
           solfataricus 98/2]
 gi|1707734|emb|CAA69454.1| orf c01004 [Sulfolobus solfataricus P2]
 gi|13815423|gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|261603331|gb|ACX92934.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus solfataricus 98/2]
          Length = 363

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  + +  I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWVYCPDECFDETPDGYYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEY 73
           D     E+W +  ++Y
Sbjct: 326 DYRRPYEMWKEDKAKY 341


>gi|329929483|ref|ZP_08283217.1| 4Fe-4S binding domain protein [Paenibacillus sp. HGF5]
 gi|328936371|gb|EGG32818.1| 4Fe-4S binding domain protein [Paenibacillus sp. HGF5]
          Length = 112

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV+VCP + F   E  L +    ++C  C +CE  CP DA+
Sbjct: 5  VSQQRCIECGL--CVKVCPTNVFDRTETGLPVIARQEDCQTCFICEAYCPADAL 56


>gi|326796151|ref|YP_004313971.1| electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
 gi|326546915|gb|ADZ92135.1| Electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
          Length = 198

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 107 VAVIREDECIGC--TKCIQACPVDAILGAAKQMHTVIADECTGCDLCVEPCPVDCI 160


>gi|322832829|ref|YP_004212856.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
 gi|321168030|gb|ADW73729.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
          Length = 188

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIK 56
           + Y+   NCI C  T C++ CPVD         A+H    D C  C +C   CP D I+
Sbjct: 108 VAYIDESNCIGC--TKCIQACPVDAIVGATR--AVHTVITDLCTGCDLCVAPCPTDCIE 162


>gi|326424121|ref|NP_761830.2| NrfC protein [Vibrio vulnificus CMCP6]
 gi|319999504|gb|AAO11357.2| NrfC protein [Vibrio vulnificus CMCP6]
          Length = 226

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 95  KSCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACP 141


>gi|310780339|ref|YP_003968671.1| FAD dependent oxidoreductase [Ilyobacter polytropus DSM 2926]
 gi|309749662|gb|ADO84323.1| FAD dependent oxidoreductase [Ilyobacter polytropus DSM 2926]
          Length = 661

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNI 80
           +  D+C  CGVC  +CP    K + E GL     I + +A   PN+
Sbjct: 238 VDMDKCTGCGVCTEKCPSKKAKNEFEEGLSKRGAIYTPFAQAVPNV 283


>gi|283833194|ref|ZP_06352935.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291070827|gb|EFE08936.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
             G
Sbjct: 119 AKG 121


>gi|262193883|ref|YP_003265092.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262077230|gb|ACY13199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 591

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 15/51 (29%)

Query: 17  CVEVCPVD----CFYEGE------NFLAIH-----PDECIDCGVCEPECPV 52
           C EVCPV       YE E        + +H     P+ CI CG+CE ECPV
Sbjct: 512 CEEVCPVSPKAIGTYEEEIVRWDGTKVTLHKPYMRPELCIGCGICERECPV 562


>gi|224023757|ref|ZP_03642123.1| hypothetical protein BACCOPRO_00473 [Bacteroides coprophilus DSM
           18228]
 gi|224016979|gb|EEF74991.1| hypothetical protein BACCOPRO_00473 [Bacteroides coprophilus DSM
           18228]
          Length = 268

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           D CI CG+CE  CP++ I+ D +P
Sbjct: 199 DACISCGICEKVCPMNNIRVDRKP 222


>gi|224372257|ref|YP_002606629.1| ferredoxin [Nautilia profundicola AmH]
 gi|223588828|gb|ACM92564.1| ferredoxin [Nautilia profundicola AmH]
          Length = 85

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    CV+ CP       +    I PD C +C        C   CPVDA
Sbjct: 1  MSLMINEECIACDA--CVDECPNGAIEPADPIYEIDPDLCTECIEHGGEPQCVQVCPVDA 58

Query: 55 IKPD---TEPGLELWLK 68
          I PD    E   EL LK
Sbjct: 59 IVPDPDNMENAKELRLK 75


>gi|254475969|ref|ZP_05089355.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
 gi|214030212|gb|EEB71047.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
          Length = 164

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|213421582|ref|ZP_03354648.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 161

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
           +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 28 HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 74


>gi|16762960|ref|NP_458577.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144447|ref|NP_807789.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213021319|ref|ZP_03335766.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163055|ref|ZP_03348765.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427238|ref|ZP_03359988.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213622746|ref|ZP_03375529.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647382|ref|ZP_03377435.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859692|ref|ZP_03385396.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25285334|pir||AF1020 cytochrome c-type biogenesis protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505267|emb|CAD09263.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140085|gb|AAO71649.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 223

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|27380595|ref|NP_772124.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27353760|dbj|BAC50749.1| blr5484 [Bradyrhizobium japonicum USDA 110]
          Length = 656

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 11  LCKHTD--------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           LC H+         C+++CP        + +A++ D C  CG C   CP  A
Sbjct: 257 LCAHSRSKLTGCHRCLDLCPTGAITPDGDHVAVNADVCAGCGQCAAACPTGA 308


>gi|219667337|ref|YP_002457772.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219537597|gb|ACL19336.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECP 51
           Y ++  C  CK   CVE CP    ++ EN +  H   +CI C  C   CP
Sbjct: 52  YYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCP 101


>gi|332162877|ref|YP_004299454.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604279|emb|CBY25777.1| hydrogenase-2 operon protein hybA precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667107|gb|ADZ43751.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863324|emb|CBX73447.1| hydrogenase-2 operon protein hybA [Yersinia enterocolitica W22703]
          Length = 342

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +H  PD C  C  C   CP +  K D
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYD 168


>gi|304314315|ref|YP_003849462.1| glutamate synthase, large subunit [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587774|gb|ADL58149.1| predicted glutamate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 619

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    C  VCP D     E+   I   +CI CG C   CPV
Sbjct: 167 CVFCG--TCEIVCPTDAIEIVEDHAEIDKTKCIMCGSCLAACPV 208


>gi|297620126|ref|YP_003708231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297379103|gb|ADI37258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 166

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C+EVCPVD          +  ++C+ CG C   CPV AI
Sbjct: 38 NEKCVFC--NKCIEVCPVDAIDLNFPENTVITEKCVHCGTCIDVCPVKAI 85


>gi|288932668|ref|YP_003436728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894916|gb|ADC66453.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 160

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C+   C+ +CPV   Y  E  N + + PD CI C  C   CP  AI  D +
Sbjct: 52  GCEHCEEAPCMIICPVKAIYRDEETNAVLLDPDICIGCKQCMVVCPFGAIGFDED 106


>gi|326201720|ref|ZP_08191591.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988320|gb|EGD49145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + +NC  CK       CP   F +G+  + I P  C  CG+C   CP +AI
Sbjct: 541 YTIKDNCKNCKKCITDIGCPAISFIDGK--VNIEPSLCYGCGLCTNVCPFNAI 591


>gi|257068147|ref|YP_003154402.1| formate dehydrogenase beta subunit [Brachybacterium faecium DSM
           4810]
 gi|256558965|gb|ACU84812.1| formate dehydrogenase beta subunit [Brachybacterium faecium DSM
           4810]
          Length = 333

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ C  C +  C++VCP    +  E+  + +  D C  CG C   CP   I+
Sbjct: 136 MSSDVCKHCTNAGCLDVCPTGAIFRSEHGSVVVQEDVCNGCGTCVSACPFGVIE 189


>gi|169633144|ref|YP_001706880.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          SDF]
 gi|169151936|emb|CAP00792.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii]
          Length = 87

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCDM--CLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKQD 62


>gi|168822252|ref|ZP_02834252.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197251728|ref|YP_002146655.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204927473|ref|ZP_03218674.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238913210|ref|ZP_04657047.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|197215431|gb|ACH52828.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204322815|gb|EDZ08011.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205341348|gb|EDZ28112.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 244

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|94263864|ref|ZP_01287669.1| Electron-transferring-flavoprotein dehydrogenase [delta
           proteobacterium MLMS-1]
 gi|93455785|gb|EAT05956.1| Electron-transferring-flavoprotein dehydrogenase [delta
           proteobacterium MLMS-1]
          Length = 553

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  E C       C+  CP   + +  E     +P  C+ C  C+ +CP D I+
Sbjct: 485 ICREQCRAKYGAPCITFCPAGVYEQIAEQPRPANPSNCLHCKTCQRKCPYDNIR 538


>gi|15897231|ref|NP_341836.1| putative ATPase RIL [Sulfolobus solfataricus P2]
 gi|284174476|ref|ZP_06388445.1| putative ATPase RIL [Sulfolobus solfataricus 98/2]
 gi|13813430|gb|AAK40626.1| RNase L inhibitor [Sulfolobus solfataricus P2]
 gi|261601897|gb|ACX91500.1| ABC transporter related protein [Sulfolobus solfataricus 98/2]
          Length = 600

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 16 DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAI 55
          +C+  CPVD    G   +           I+ + CI CG+C  +CP +AI
Sbjct: 19 ECINFCPVD--RSGGKAIELSEIVKGKPVIYEETCIGCGICVKKCPYEAI 66


>gi|89896832|ref|YP_520319.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89336280|dbj|BAE85875.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 192

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECP 51
           Y ++  C  CK   CVE CP    ++ EN +  H   +CI C  C   CP
Sbjct: 52  YYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCP 101


>gi|319941590|ref|ZP_08015916.1| electron transport complex protein rnfB [Sutterella wadsworthensis
           3_1_45B]
 gi|319804960|gb|EFW01802.1| electron transport complex protein rnfB [Sutterella wadsworthensis
           3_1_45B]
          Length = 224

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  E CI C    CV  CP D        L A+    C  C +C P CP+D I
Sbjct: 95  IRAEECIGCSW--CVRACPTDAIGGSPKHLHAVLEARCTGCSLCAPACPMDCI 145


>gi|307299479|ref|ZP_07579279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914878|gb|EFN45265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 96

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
          M +V  + C  C  T C++ CPVD     +   A I+   C  CG C   CPV+AI+P++
Sbjct: 1  MPWVREDLCTGC--TLCLKSCPVDGAIVMQGGKAHINNSLCTRCGDCFSACPVNAIRPNS 58

Query: 60 E 60
          E
Sbjct: 59 E 59


>gi|303229944|ref|ZP_07316718.1| putative ferredoxin [Veillonella atypica ACS-134-V-Col7a]
 gi|302515310|gb|EFL57278.1| putative ferredoxin [Veillonella atypica ACS-134-V-Col7a]
          Length = 67

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG     I    CI CG C   CPV A++
Sbjct: 4  LKFDIDDTCVKCGA--CAEDCPVQCITEGATKFIIGSG-CISCGDCYSICPVGAVQ 56


>gi|303231770|ref|ZP_07318492.1| putative ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302513561|gb|EFL55581.1| putative ferredoxin [Veillonella atypica ACS-049-V-Sch6]
          Length = 67

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + + C+ C    C E CPV C  EG     I  + CI CG C   CPV A++
Sbjct: 4  LKFDIDDTCVKCGA--CAEDCPVQCITEGTTKFII-GNGCIGCGDCYSICPVGAVQ 56


>gi|291280069|ref|YP_003496904.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
 gi|290754771|dbj|BAI81148.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
          Length = 184

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
            C  C++T C  VCP    Y+ E   + +  D+CI C  C   CP DA
Sbjct: 62  QCQHCENTPCASVCPTHATYKTEEGVVLVDYDKCILCKACMTACPYDA 109


>gi|283798986|ref|ZP_06348139.1| formate hydrogenlyase subunit 6 [Clostridium sp. M62/1]
 gi|291073254|gb|EFE10618.1| formate hydrogenlyase subunit 6 [Clostridium sp. M62/1]
          Length = 112

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDAIKPDT 59
          + CI C    CV  CP +     E  LA        +   CI CG CE  CP  AIK   
Sbjct: 34 QQCIGC--AACVNACPSNAL-TVETLLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQ 90

Query: 60 EPGLELWLK 68
          E  L +W K
Sbjct: 91 EYELAVWKK 99


>gi|269139538|ref|YP_003296239.1| anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           EIB202]
 gi|267985199|gb|ACY85028.1| anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           EIB202]
 gi|304559427|gb|ADM42091.1| Anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           FL6-60]
          Length = 205

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++ E+ F+ +    CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|296137375|ref|YP_003644617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797497|gb|ADG32287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 736

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C LC    CV  CP     +      L      C+ CG+C   CP DAI+   EP L LW
Sbjct: 607 CTLC--LSCVGACPAGALADNPQTPQLRFIEKNCVQCGLCVKTCPEDAIR--LEPRL-LW 661


>gi|256811300|ref|YP_003128669.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus fervens
           AG86]
 gi|256794500|gb|ACV25169.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus fervens
           AG86]
          Length = 269

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y +  NCI C    C+E+C  D     E+F  I+P  C  CG CE  C  +A++P
Sbjct: 62  VYKINNNCIKCGK--CLEICQFDAI---EDF-KINPILCEGCGACELICEFNAVEP 111


>gi|291285965|ref|YP_003502781.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883125|gb|ADD66825.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
          Length = 165

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 17  CVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C +VCP +C +        GE  +    +    CI CG CE  CPVDAI    E     W
Sbjct: 67  CQKVCPSECIHIETDCGPNGERLIRKYELDLSRCIYCGYCEEVCPVDAIHMGWE-----W 121

Query: 67  LKINSEYATQWPNITT----KKESLPSAAKMDGVKQK 99
             ++S       N+ T     K++L    K   +K+K
Sbjct: 122 NTVDSNRDNYVINMKTLSQNYKDNLEGNWKNKHLKKK 158


>gi|291287574|ref|YP_003504390.1| ferredoxin-dependent glutamate synthase [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290884734|gb|ADD68434.1| ferredoxin-dependent glutamate synthase [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 546

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTK 83
          ++  PD C  CG C   CP  AI    E G+E   K+ S++ T  P +  K
Sbjct: 18 ISYRPDRCTLCGKCVAACPFKAI----EAGVEKRRKVVSDHLTPEPKVEFK 64


>gi|226941414|ref|YP_002796488.1| DmsB [Laribacter hongkongensis HLHK9]
 gi|226716341|gb|ACO75479.1| DmsB [Laribacter hongkongensis HLHK9]
          Length = 204

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +Y ++ +C  C    C +VCP     +  N F+A+    CI C  C+  CP  A + + 
Sbjct: 58  FSYYLSVSCNHCADPACTKVCPTGAMAKDANGFVAVDDAVCIGCKSCQMACPYGAPQYNA 117

Query: 60  EPG 62
           + G
Sbjct: 118 DTG 120


>gi|62179976|ref|YP_216393.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614201|ref|YP_001588166.1| hypothetical protein SPAB_01943 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551649|ref|ZP_02345403.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167995015|ref|ZP_02576105.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168240895|ref|ZP_02665827.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168463207|ref|ZP_02697138.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194447767|ref|YP_002045390.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|198245067|ref|YP_002215743.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389577|ref|ZP_03216188.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213161804|ref|ZP_03347514.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428559|ref|ZP_03361309.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583929|ref|ZP_03365755.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647222|ref|ZP_03377275.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854959|ref|ZP_03383199.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827395|ref|ZP_06546007.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|62127609|gb|AAX65312.1| Tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161363565|gb|ABX67333.1| hypothetical protein SPAB_01943 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406071|gb|ACF66290.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195634294|gb|EDX52646.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197939583|gb|ACH76916.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602022|gb|EDZ00568.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205323655|gb|EDZ11494.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327218|gb|EDZ13982.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339348|gb|EDZ26112.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|312912370|dbj|BAJ36344.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224011|gb|EFX49074.1| Tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322714443|gb|EFZ06014.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 244

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|15678306|ref|NP_275421.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621329|gb|AAB84784.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 56

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +T  V E C+ C   +C  VCP +     E  L    DEC +C +C   CPV A++
Sbjct: 2  ITMKVKEWCMFC--GECAGVCPRNLIEVRETSLKFREDECRECNICIQVCPVRALE 55


>gi|13474498|ref|NP_106067.1| NAD-dependent formate dehydrogenase alpha subunit [Mesorhizobium
           loti MAFF303099]
 gi|14025252|dbj|BAB51853.1| NAD-dependent formate dehydrogenase alpha subunit [Mesorhizobium
           loti MAFF303099]
          Length = 970

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 16/65 (24%)

Query: 9   CILCKHTDCVEVC-----PVDCFYEGENF-----LAIHPD----ECIDCGVCEPECPVDA 54
           CI+C  + CV  C           EG  F       +H D    EC+ CG C   CP DA
Sbjct: 190 CIVC--SRCVRACEEVQGTFALTIEGRGFESRMVAGMHEDFIASECVSCGACVQACPTDA 247

Query: 55  IKPDT 59
           ++  T
Sbjct: 248 LREKT 252


>gi|150018368|ref|YP_001310622.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904833|gb|ABR35666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 302

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ CI C    C++ C  D F + +  +     +C+ CG+C   CP  A+K
Sbjct: 249 SDKCIKCGA--CIKRCHFDVFTKVDGVIKSDISKCVGCGICSNSCPTKALK 297


>gi|58259273|ref|XP_567049.1| hypothetical protein CNA07330 [Cryptococcus neoformans var.
          neoformans JEC21]
 gi|134107419|ref|XP_777594.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50260288|gb|EAL22947.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|57223186|gb|AAW41230.1| hypothetical protein CNA07330 [Cryptococcus neoformans var.
          neoformans JEC21]
          Length = 603

 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 12 CKHTDCVEVCPVDC--FYEGENFLAIHPDE---------CIDCGVCEPECPVDAIK 56
          CK   C + C   C     G+  + ++P++         CI CG+C  +CP DAI+
Sbjct: 16 CKPKRCRQECKRSCPVVKMGKLCIEVNPNDKKAFISEELCIGCGICVKKCPFDAIQ 71


>gi|256826549|ref|YP_003150508.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582692|gb|ACU93826.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 199

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    C+ VCPV+        + ++   CI C +C   CP  AI P 
Sbjct: 50  TCHHCAGAPCLAVCPVNAITRENGSIQVNEQTCIGCKLCGIVCPFGAIHPS 100


>gi|238920366|ref|YP_002933881.1| dimethylsulfoxide reductase, chain B, [Edwardsiella ictaluri
           93-146]
 gi|238869935|gb|ACR69646.1| dimethylsulfoxide reductase, chain B, putative [Edwardsiella
           ictaluri 93-146]
          Length = 205

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C    CV+VCP    ++ E+ F+ +    CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
           + G
Sbjct: 119 QKG 121


>gi|261343672|ref|ZP_05971317.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
 gi|282568055|gb|EFB73590.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
          Length = 204

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163


>gi|289207279|ref|YP_003459345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. K90mix]
 gi|288942910|gb|ADC70609.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. K90mix]
          Length = 82

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP +AI P  E
Sbjct: 7  DECINCDVCEPECPNEAIYPGDE 29


>gi|254506838|ref|ZP_05118977.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus 16]
 gi|219550123|gb|EED27109.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus 16]
          Length = 230

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           ++C  C++  CV VCP    Y+ E    + +H ++C+ CG C   CP
Sbjct: 97  KSCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACP 143


>gi|168263787|ref|ZP_02685760.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445522|ref|YP_002040639.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197262048|ref|ZP_03162122.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|194404185|gb|ACF64407.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197240303|gb|EDY22923.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205347598|gb|EDZ34229.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 244

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|225164850|ref|ZP_03727073.1| ferredoxin [Opitutaceae bacterium TAV2]
 gi|224800539|gb|EEG18912.1| ferredoxin [Opitutaceae bacterium TAV2]
          Length = 56

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y +T E C+ C    C+  CP++    G  +  I P  CIDCG C   CP  A
Sbjct: 1  MSYQITPEKCVACGA--CIADCPMEAIKAGSPYR-IDPKLCIDCGACADACPESA 52


>gi|126736053|ref|ZP_01751797.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
 gi|126714610|gb|EBA11477.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
          Length = 167

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 44 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 89


>gi|90022045|ref|YP_527872.1| NADH:ubiquinone oxidoreductase subunit RnfB [Saccharophagus
           degradans 2-40]
 gi|89951645|gb|ABD81660.1| electron transport complex, RnfABCDGE type, B subunit
           [Saccharophagus degradans 2-40]
          Length = 206

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + Y+  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 114 VAYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCI 167


>gi|73540385|ref|YP_294905.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117798|gb|AAZ60061.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 717

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 12/57 (21%)

Query: 11  LCKH--------TDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H        T C+++C        +++G+  + + P+ C+ CG C   CP  AI
Sbjct: 328 LCAHGRNQTTGCTACIDICSTQAIRSQWHDGKGRIEVTPNLCMGCGACTTVCPSGAI 384


>gi|14590719|ref|NP_142789.1| putative ATPase RIL [Pyrococcus horikoshii OT3]
 gi|3257270|dbj|BAA29953.1| 590aa long hypothetical transport protein [Pyrococcus horikoshii
          OT3]
          Length = 590

 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 12 CKHTDCVEVCPVD-------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C H  C  VCPV+          E  N   I    C  CG+C  +CP  AI
Sbjct: 16 CGHFLCERVCPVNRMGGEAIIIDEENNRPIIQEASCTGCGICVHKCPFKAI 66


>gi|302389364|ref|YP_003825185.1| iron-sulfur cluster-binding protein CooF [Thermosediminibacter
           oceani DSM 16646]
 gi|302199992|gb|ADL07562.1| iron-sulfur cluster-binding protein CooF [Thermosediminibacter
           oceani DSM 16646]
          Length = 138

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
            E C LC +  C+  CP       E   + +    C  CG+C+  CP  AI
Sbjct: 54  VEQCSLCSNPKCISACPAGALSRSEAGIIKVDTPSCNKCGMCQDACPFGAI 104


>gi|284048866|ref|YP_003399205.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953087|gb|ADB47890.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 504

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y++T+ C  C    C+  CP       +    I  D CI+CG C+  CP  A+     P
Sbjct: 105 YMITDVCRRCLTHRCMNGCPKKAISVYQGRAHIDYDMCIECGNCKRACPYGAVVEIARP 163


>gi|260597696|ref|YP_003210267.1| formate dehydrogenase-H ferredoxin subunit [Cronobacter turicensis
           z3032]
 gi|260216873|emb|CBA30415.1| Electron transport protein hydN [Cronobacter turicensis z3032]
          Length = 197

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++    P
Sbjct: 74  CRQCEDAPCASVCPNGAISRDGDFVHVHQQRCIGCKTCVVACPYGAMEVVVRP 126


>gi|297570339|ref|YP_003691683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfurivibrio alkaliphilus AHT2]
 gi|296926254|gb|ADH87064.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfurivibrio alkaliphilus AHT2]
          Length = 338

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C   CP    Y GE  + +  + C  C VC   CP  A+
Sbjct: 38 CARACPPQAIYPGEGTVRLESERCTGCLVCTAACPTGAL 76


>gi|269837680|ref|YP_003319908.1| NADH-quinone oxidoreductase, chain I [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786943|gb|ACZ39086.1| NADH-quinone oxidoreductase, chain I [Sphaerobacter thermophilus
           DSM 20745]
          Length = 148

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 9   CILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C  +CP  C         EG+  LA   +    C+ CG+C   CPVDAI   
Sbjct: 52  CVACGL--CARICPTSCLEMTVVPSEEGDRELAEFILRSGRCLFCGMCAQVCPVDAITMS 109

Query: 59  TE 60
            E
Sbjct: 110 GE 111


>gi|283795361|ref|ZP_06344514.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291077019|gb|EFE14383.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091066|emb|CBK77173.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 262

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C    C +VCP  CF+ EG+  +   P  CI C  C   CP+ AI
Sbjct: 174 YQITDECIGC--GICQKVCPKGCFHLEGQKSIW-EPAGCISCMACIHACPMAAI 224


>gi|225571993|ref|ZP_03780857.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040526|gb|EEG50772.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
          Length = 368

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V  + CI CK   C ++C  D     +   AI+ D+C+ CG C   CP DAI P ++
Sbjct: 191 HVNQKLCIGCK--KCAQICAHDAPEFKDLKAAINHDKCVGCGRCLGVCPKDAICPASD 246


>gi|168239267|ref|ZP_02664325.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734836|ref|YP_002114400.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710338|gb|ACF89559.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288003|gb|EDY27390.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|322615129|gb|EFY12052.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619972|gb|EFY16845.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622283|gb|EFY19128.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627806|gb|EFY24596.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633095|gb|EFY29838.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636659|gb|EFY33362.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641147|gb|EFY37789.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644916|gb|EFY41449.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650245|gb|EFY46659.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655820|gb|EFY52122.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660146|gb|EFY56385.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665288|gb|EFY61476.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669545|gb|EFY65693.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673471|gb|EFY69573.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677399|gb|EFY73463.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679938|gb|EFY75977.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687410|gb|EFY83382.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192363|gb|EFZ77594.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198618|gb|EFZ83719.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203099|gb|EFZ88130.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208664|gb|EFZ93602.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213821|gb|EFZ98599.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217641|gb|EGA02356.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218989|gb|EGA03499.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223656|gb|EGA07966.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229443|gb|EGA13566.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232666|gb|EGA16762.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240296|gb|EGA24340.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242716|gb|EGA26737.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245927|gb|EGA29915.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252504|gb|EGA36348.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259120|gb|EGA42765.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260073|gb|EGA43698.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267163|gb|EGA50648.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271514|gb|EGA54935.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 244

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|168233577|ref|ZP_02658635.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470968|ref|ZP_03076952.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457332|gb|EDX46171.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332342|gb|EDZ19106.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 244

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|167470482|ref|ZP_02335186.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis FV-1]
          Length = 190

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 111 VAFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIE 165


>gi|55378233|ref|YP_136083.1| NADH dehydrogenase/oxidoreductase-like protein [Haloarcula
          marismortui ATCC 43049]
 gi|55230958|gb|AAV46377.1| NADH dehydrogenase/oxidoreductase-like protein [Haloarcula
          marismortui ATCC 43049]
          Length = 153

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 7  ENCILCKHTDCVEVCP-------VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C+   C  VCP       +D    GE +  +H  +CI C +CE  CP DAI
Sbjct: 45 ERCIWCRQ--CENVCPNNTIQIVMDEQRNGEQY-NLHIGQCIYCRLCEEVCPTDAI 97


>gi|147668770|ref|YP_001213588.1| reductive dehalogenase [Dehalococcoides sp. BAV1]
 gi|146269718|gb|ABQ16710.1| reductive dehalogenase [Dehalococcoides sp. BAV1]
          Length = 480

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CIDCG C   CPV AI    E   ++W K
Sbjct: 337 CIDCGRCASVCPVSAINSSRESSWDIWPK 365


>gi|77463081|ref|YP_352585.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1]
 gi|126461953|ref|YP_001043067.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029]
 gi|221638937|ref|YP_002525199.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131]
 gi|332557954|ref|ZP_08412276.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
 gi|115502510|sp|Q3J3F0|NUOI1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
          Full=NADH dehydrogenase I subunit I 1; AltName:
          Full=NDH-1 subunit I 1
 gi|156632691|sp|A3PIX9|NUOI1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
          Full=NADH dehydrogenase I subunit I 1; AltName:
          Full=NDH-1 subunit I 1
 gi|77387499|gb|ABA78684.1| Subunit of NADH-ubiquinone oxidoreductase (Complex I) that
          contains 2 Fe-S centers [Rhodobacter sphaeroides 2.4.1]
 gi|126103617|gb|ABN76295.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides
          ATCC 17029]
 gi|221159718|gb|ACM00698.1| NADH-quinone oxidoreductase subunit I 1 [Rhodobacter sphaeroides
          KD131]
 gi|332275666|gb|EGJ20981.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 44 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 89


>gi|94309960|ref|YP_583170.1| ferredoxin [Cupriavidus metallidurans CH34]
 gi|93353812|gb|ABF07901.1| electron transport complex, RnfABCDGE type, B subunit [Cupriavidus
           metallidurans CH34]
          Length = 279

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++ CPVD      +    + PD C  C +C   CPVD I+
Sbjct: 91  CIGC--TLCIQACPVDAIVGAPKQMHTVLPDWCTGCDLCVTPCPVDCIE 137


>gi|330898583|gb|EGH30002.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 291

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C++ CPVD        +  +  DEC  C +C   CP   +K
Sbjct: 83  VAFIREAECIGC--TKCIQACPVDAILGASRLMHTVIIDECTGCDLCVAPCPGIVLK 137


>gi|330805166|ref|XP_003290557.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
 gi|325079303|gb|EGC32909.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
          Length = 203

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 18  VEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
            E  P+   + GE+ L  +P   + CI C +CE  CP  AI  + EP
Sbjct: 79  FEKTPISPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEP 125


>gi|284007051|emb|CBA72326.1| glutamate synthase (NADPH) small chain [Arsenophonus nasoniae]
          Length = 603

 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C +  C+  CPVD        + +  + CI C  C   CP  AI
Sbjct: 56  CRHCNNAPCITSCPVDALRFVSATVQLDQNRCIGCKSCIIACPFGAI 102


>gi|284006931|emb|CBA72203.1| electron transport protein [Arsenophonus nasoniae]
          Length = 181

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++  + P
Sbjct: 58  CRQCEDAPCANVCPNGAITRESDFVHVHQARCIGCKTCVVACPYGAMEVVSRP 110


>gi|295675400|ref|YP_003603924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1002]
 gi|295435243|gb|ADG14413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1002]
          Length = 85

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|257063355|ref|YP_003143027.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256791008|gb|ACV21678.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 401

 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  CK   C   CP    C Y  EN +A    +  EC+ CG+C+  CP  AIK  T+
Sbjct: 302 CKSCKM--CAVFCPTGAICKYRDENGVAGIEHYVAECVHCGLCQDICPAGAIKSVTQ 356


>gi|288869815|ref|ZP_05976441.2| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|288860364|gb|EFC92662.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 343

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLELW 66
           CI CK   C++ CPV   + E +  + ++P +CI CG C   CPV+ A+K      ++  
Sbjct: 128 CIRCKK--CMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCPVNGAMKGVFVDNIQDQ 185

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
            ++ ++  T        KE    A K D + Q
Sbjct: 186 KELIAQVVTFLEKYINNKEEDLRALKKDRLLQ 217


>gi|222445705|ref|ZP_03608220.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349746|ref|ZP_05975163.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanobrevibacter smithii DSM 2374]
 gi|222435270|gb|EEE42435.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861701|gb|EFC93999.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanobrevibacter smithii DSM 2374]
          Length = 365

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENF----LAIHPDECIDCGVCEPECPVDAIK 56
           + CI CK   C   CP D         E +N     +++  D+C+ CG+C+  CP +AI 
Sbjct: 134 DKCIYCKR--CETACPQDAITVMRKLPERQNLVSGEISVSDDDCVYCGICQELCPAEAIV 191

Query: 57  PDTEPGLE 64
            D   G E
Sbjct: 192 VDNTTGQE 199


>gi|197285565|ref|YP_002151437.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|227356062|ref|ZP_03840453.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|194683052|emb|CAR43553.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           HI4320]
 gi|227163839|gb|EEI48747.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 205

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVNQDVCVGCRYCELRCPYGAPQFDE 118

Query: 60  EPGL 63
           +  L
Sbjct: 119 KKKL 122


>gi|170691834|ref|ZP_02882998.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           graminis C4D1M]
 gi|170143118|gb|EDT11282.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           graminis C4D1M]
          Length = 344

 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I
Sbjct: 128 CIGC--TLCMQACPVDAIVGAPKHMHTVVAELCTGCDLCVPPCPVDCI 173


>gi|162148803|ref|YP_001603264.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209545449|ref|YP_002277678.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|161787380|emb|CAP56975.1| NADH-quinone oxidoreductase chain I [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209533126|gb|ACI53063.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 162

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP +AI  ++EP
Sbjct: 39 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEATCPAEAITIESEP 84


>gi|156934238|ref|YP_001438154.1| hypothetical protein ESA_02068 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532492|gb|ABU77318.1| hypothetical protein ESA_02068 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 162

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C  C+   C +VCPV+        + ++   C+ C +C   CP  AI+      L +   
Sbjct: 12 CHHCEDAPCAQVCPVNAITREAGAIQLNESLCVSCKLCGIACPFGAIEFSGSRPLHIPAN 71

Query: 69 INS 71
          +NS
Sbjct: 72 VNS 74


>gi|150398828|ref|YP_001322595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011531|gb|ABR53983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 397

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 16/63 (25%)

Query: 15  TDCVEVCPVDCFYEG---------ENFLA-----IHPDECIDCGVCEPECPVDAIKPDTE 60
           T CV++CP D  Y G          NF+      +  D C+ CG+C PECPV +I  + E
Sbjct: 98  TKCVDICPDD--YVGMEGIIEPAKRNFVIPKEPIVVTDTCVGCGICVPECPVASISLENE 155

Query: 61  PGL 63
             +
Sbjct: 156 KAV 158


>gi|21228427|ref|NP_634349.1| ech hydrogenase subunit [Methanosarcina mazei Go1]
 gi|20906904|gb|AAM32021.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1]
          Length = 126

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + E +  + I+P+ CI CG+C+ +CP DAI
Sbjct: 31 YKEFKGRIVINPENCILCGLCQKKCPPDAI 60


>gi|332088844|gb|EGI93956.1| dimethylsulfoxide reductase, chain B [Shigella boydii 5216-82]
          Length = 205

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|327401724|ref|YP_004342563.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327317232|gb|AEA47848.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 756

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 23  VDCFYEGENFLA--------IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           VD + E  NF+A        + P  CI CG C   CPVD ++   + G+     I+ E+ 
Sbjct: 218 VDIWKENGNFVARIRKAPQYVDPSRCISCGKCSEVCPVD-VENSFDCGMSKRKAIDKEFK 276

Query: 75  TQWPNI 80
              P+I
Sbjct: 277 LAIPDI 282


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C + CPV+C   + +    I  D C+ CG C  +CP DAI
Sbjct: 552 CAKNCPVNCIDGDRKTQFVIDEDACVRCGTCYDKCPFDAI 591


>gi|238759103|ref|ZP_04620272.1| Hydrogenase-2 operon protein hybA [Yersinia aldovae ATCC 35236]
 gi|238702651|gb|EEP95199.1| Hydrogenase-2 operon protein hybA [Yersinia aldovae ATCC 35236]
          Length = 329

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +H  PD C  C  C   CP +  K D
Sbjct: 100 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYD 155


>gi|268679825|ref|YP_003304256.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617856|gb|ACZ12221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 154

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 26/63 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C+   C+ +CP       E F+ +    C+ CG C   CP  AI    E      L
Sbjct: 59  QCMHCETPSCLAICPHGVISLEEGFIKLDETACVGCGCCALACPYGAISMVKEDERVYAL 118

Query: 68  KIN 70
           K N
Sbjct: 119 KCN 121


>gi|254173867|ref|ZP_04880538.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermococcus sp. AM4]
 gi|214032116|gb|EEB72947.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermococcus sp. AM4]
          Length = 237

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C  C+   C++ CP     + E  F+ ++P+ CI C +C   CP     P  EP
Sbjct: 89  FNVPMRCQHCEDAPCMKACPTGAISKTEEGFVVLNPNMCIGCLMCVMACPFG--HPKYEP 146

Query: 62  GLELWLKINS 71
             ++ LK +S
Sbjct: 147 EYKVVLKCDS 156


>gi|167770144|ref|ZP_02442197.1| hypothetical protein ANACOL_01487 [Anaerotruncus colihominis DSM
          17241]
 gi|167667466|gb|EDS11596.1| hypothetical protein ANACOL_01487 [Anaerotruncus colihominis DSM
          17241]
          Length = 564

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+  CPV      +N   I P+ECI CG C   CP +A
Sbjct: 18 CIRSCPVKSIRFSDNQAKIIPEECILCGRCVVVCPQNA 55


>gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 488

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ + C+ C  T C ++CPV+C   + +    I   +CI CG C+ +C  +AI
Sbjct: 435 ILKDKCVGC--TLCAKICPVECISGQVKQPHVIDQSKCIKCGACQDKCKFEAI 485


>gi|33594448|ref|NP_882092.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33597856|ref|NP_885499.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33564523|emb|CAE43838.1| putative ferredoxin [Bordetella pertussis Tohama I]
 gi|33574285|emb|CAE38618.1| putative ferredoxin [Bordetella parapertussis]
 gi|332383859|gb|AEE68706.1| ferredoxin [Bordetella pertussis CS]
          Length = 213

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           +  V+ E +CI C  T C++ CPVD        +  +  D C  C +C   CPVD I  D
Sbjct: 78  LVAVIDEAHCIGC--TLCMKACPVDAIVGANKRMHTVLADWCTGCDLCVAPCPVDCI--D 133

Query: 59  TEPGLELW 66
             P   +W
Sbjct: 134 MRPAARVW 141


>gi|26246921|ref|NP_752961.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           CFT073]
 gi|110641095|ref|YP_668825.1| anaerobic dimethyl sulfoxide reductase, subunit B [Escherichia coli
           536]
 gi|191172116|ref|ZP_03033660.1| dimethylsulfoxide reductase, B subunit [Escherichia coli F11]
 gi|227884138|ref|ZP_04001943.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           83972]
 gi|300978541|ref|ZP_07174294.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 45-1]
 gi|300983194|ref|ZP_07176473.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 200-1]
 gi|301047846|ref|ZP_07194896.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 185-1]
 gi|26107321|gb|AAN79504.1|AE016758_108 Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           CFT073]
 gi|110342687|gb|ABG68924.1| anaerobic dimethyl sulfoxide reductase, subunit B [Escherichia coli
           536]
 gi|190907643|gb|EDV67238.1| dimethylsulfoxide reductase, B subunit [Escherichia coli F11]
 gi|227838890|gb|EEJ49356.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           83972]
 gi|300300274|gb|EFJ56659.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 185-1]
 gi|300306958|gb|EFJ61478.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 200-1]
 gi|300409620|gb|EFJ93158.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 45-1]
 gi|307552737|gb|ADN45512.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           ABU 83972]
 gi|315291254|gb|EFU50614.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 153-1]
 gi|324012985|gb|EGB82204.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 60-1]
          Length = 205

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
             G
Sbjct: 119 TKG 121


>gi|331006088|ref|ZP_08329424.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [gamma proteobacterium IMCC1989]
 gi|330420125|gb|EGG94455.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [gamma proteobacterium IMCC1989]
          Length = 484

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCPVD    +G  +      ECI+CG+C   C
Sbjct: 275 DCIDCSW--CVQVCPVDIDIRDGLQY------ECINCGLCVDAC 310


>gi|260466533|ref|ZP_05812722.1| formate dehydrogenase, alpha subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029682|gb|EEW30969.1| formate dehydrogenase, alpha subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 970

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 16/65 (24%)

Query: 9   CILCKHTDCVEVC-----PVDCFYEGENF-----LAIHPD----ECIDCGVCEPECPVDA 54
           CI+C  + CV  C           EG  F       +H D    EC+ CG C   CP DA
Sbjct: 190 CIVC--SRCVRACEEVQGTFALTIEGRGFESRMVAGMHEDFIASECVSCGACVQACPTDA 247

Query: 55  IKPDT 59
           ++  T
Sbjct: 248 LREKT 252


>gi|288931386|ref|YP_003435446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893634|gb|ADC65171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 558

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ENC LC    C  +CP +   + +  L      CI+C +CE  CP +AI
Sbjct: 431 VNENCTLC--DTCHRICPNEALKKEKGRLTFIHGLCINCKLCEKLCPENAI 479


>gi|256424913|ref|YP_003125566.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chitinophaga pinensis DSM 2588]
 gi|256039821|gb|ACU63365.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chitinophaga pinensis DSM 2588]
          Length = 115

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|222444431|ref|ZP_03606946.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii
          DSM 2375]
 gi|222433996|gb|EEE41161.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii
          DSM 2375]
          Length = 274

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          F+  +  +AI P  CI C +C  +CPVDAI+P
Sbjct: 37 FFSQKEIIAIAP-RCIRCNMCVDQCPVDAIEP 67


>gi|194446804|ref|YP_002043530.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405467|gb|ACF65689.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 223

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAANGIVDVNPDLCVGCQYCIAACP 136


>gi|218779418|ref|YP_002430736.1| adenylylsulfate reductase, beta subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760802|gb|ACL03268.1| Adenylylsulfate reductase, beta subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 145

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 2   TYVVTENCILCK---HTDCVEVCPVDCFYEGENFLAIH---PDECIDCGVCEPECPVDAI 55
           ++V+ E C  CK    T C+ +CP D      N +  +   PD+C +C  C   CP  AI
Sbjct: 3   SFVIQEKCDGCKGGEKTACMYICPNDLMVLDPNAMKAYNQEPDQCWECFSCVKICPTQAI 62

Query: 56  K----PDTEP-GLELWLKINSE---YATQWPNITTKKESLPSAAKMDGVKQKY 100
           +     D  P G  +   + +E   +  ++ N T K+   P     +G    Y
Sbjct: 63  EVRGYSDFVPLGSSIMPMMGTEDVMWTCKFRNGTVKRFKFPIRTTAEGSANAY 115


>gi|257075654|ref|ZP_05570015.1| ferredoxin like protein [Ferroplasma acidarmanus fer1]
          Length = 95

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CV +CP + F    N + I  + C++CG     CP D I
Sbjct: 41 CVSICPANVFTWENNRIIIGYENCVECGASRIACPYDNI 79


>gi|87120921|ref|ZP_01076813.1| ferredoxin (4Fe-4S) [Marinomonas sp. MED121]
 gi|86163759|gb|EAQ65032.1| ferredoxin (4Fe-4S) [Marinomonas sp. MED121]
          Length = 83

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 38 DECIDCGVCEPECPVDAIKP 57
          DECI+C VCEPECP +AI P
Sbjct: 7  DECINCDVCEPECPNEAIYP 26


>gi|22125976|ref|NP_669399.1| electron transport complex protein RnfB [Yersinia pestis KIM 10]
 gi|45441843|ref|NP_993382.1| electron transport complex protein RnfB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807599|ref|YP_651515.1| electron transport complex protein RnfB [Yersinia pestis Antiqua]
 gi|108811875|ref|YP_647642.1| electron transport complex protein RnfB [Yersinia pestis Nepal516]
 gi|149365836|ref|ZP_01887871.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162420711|ref|YP_001606697.1| electron transport complex protein RnfB [Yersinia pestis Angola]
 gi|165927379|ref|ZP_02223211.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938163|ref|ZP_02226722.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010629|ref|ZP_02231527.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166210969|ref|ZP_02237004.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400916|ref|ZP_02306422.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420206|ref|ZP_02311959.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425000|ref|ZP_02316753.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218929341|ref|YP_002347216.1| electron transport complex protein RnfB [Yersinia pestis CO92]
 gi|229894931|ref|ZP_04510109.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|229897673|ref|ZP_04512829.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898319|ref|ZP_04513466.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902178|ref|ZP_04517299.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|270490650|ref|ZP_06207724.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294503722|ref|YP_003567784.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|24638185|sp|Q8ZEC9|RNFB_YERPE RecName: Full=Electron transport complex protein rnfB
 gi|122979617|sp|Q1C7K2|RNFB_YERPA RecName: Full=Electron transport complex protein rnfB
 gi|123073406|sp|Q1CIY8|RNFB_YERPN RecName: Full=Electron transport complex protein rnfB
 gi|226735436|sp|A9R8U7|RNFB_YERPG RecName: Full=Electron transport complex protein rnfB
 gi|21958920|gb|AAM85650.1|AE013811_3 hypothetical protein y2086 [Yersinia pestis KIM 10]
 gi|45436705|gb|AAS62259.1| putative iron-sulfur protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775523|gb|ABG18042.1| iron-sulfur protein [Yersinia pestis Nepal516]
 gi|108779512|gb|ABG13570.1| putative iron-sulfur protein [Yersinia pestis Antiqua]
 gi|115347952|emb|CAL20874.1| putative iron-sulfur protein [Yersinia pestis CO92]
 gi|149292249|gb|EDM42323.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162353526|gb|ABX87474.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis Angola]
 gi|165913824|gb|EDR32442.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165920645|gb|EDR37893.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990331|gb|EDR42632.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166208149|gb|EDR52629.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961901|gb|EDR57922.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049769|gb|EDR61177.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056187|gb|EDR65965.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229681074|gb|EEO77169.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|229688609|gb|EEO80678.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694010|gb|EEO84059.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702026|gb|EEO90047.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|262362158|gb|ACY58879.1| electron transport complex protein RnfB [Yersinia pestis D106004]
 gi|262365491|gb|ACY62048.1| electron transport complex protein RnfB [Yersinia pestis D182038]
 gi|270339154|gb|EFA49931.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294354181|gb|ADE64522.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|320014910|gb|ADV98481.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 188

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIE 163


>gi|320086134|emb|CBY95908.1| Uncharacterized ferredoxin-like protein ydhX [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 244

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|307545319|ref|YP_003897798.1| electron transporter RnfB [Halomonas elongata DSM 2581]
 gi|307217343|emb|CBV42613.1| K03616 electron transport complex protein RnfB [Halomonas elongata
           DSM 2581]
          Length = 325

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  +  + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 75  VARIREDECIGC--TKCIQACPVDAILGAAKQMHTVIESECTGCELCVAPCPVDCI 128


>gi|307728378|ref|YP_003905602.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1003]
 gi|323524668|ref|YP_004226821.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1001]
 gi|307582913|gb|ADN56311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1003]
 gi|323381670|gb|ADX53761.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1001]
          Length = 85

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|157374447|ref|YP_001473047.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316821|gb|ABV35919.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y  + +C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA  P 
Sbjct: 62  FAYYTSISCNHCSEPVCVKACPTGAMHKRSKDGLVHVSSDLCIGCSSCAKACPYDA--PQ 119

Query: 59  TEPGLELWLK 68
            +P  ++ +K
Sbjct: 120 LDPVKKVMVK 129


>gi|118475180|ref|YP_891369.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261886061|ref|ZP_06010100.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|156633515|sp|A0RMD6|NUOI_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118414406|gb|ABK82826.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 165

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 9   CILCKHTDCVEVCPVDCFY------EGE-----NFLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C    C   CP +C +      EG      +   I   EC+ CG+C   CP DAI+ 
Sbjct: 78  CVACDM--CATACPANCIFITATEIEGSKEKAPSKFTIDLLECVFCGLCVEACPKDAIRM 135

Query: 58  DT 59
           DT
Sbjct: 136 DT 137


>gi|310816705|ref|YP_003964669.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
 gi|308755440|gb|ADO43369.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
          Length = 164

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKVPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIDAEP 86


>gi|288932558|ref|YP_003436618.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
 gi|288894806|gb|ADC66343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
          Length = 97

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  +  E CI C    C ++CP       E     +PD+C  C  C  ECP  AI
Sbjct: 1  MIKIYREKCISC--GKCEKICPSSAIKMNEFPQLAYPDKCWHCAACVKECPAKAI 53


>gi|261402831|ref|YP_003247055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369824|gb|ACX72573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 14/60 (23%)

Query: 8   NCILCKHTDCVEVCPVDCF------------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C+LC+   C++VCP++               +      +  D+C+ CGVC PECPV AI
Sbjct: 97  HCVLCQK--CIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAI 154


>gi|229523599|ref|ZP_04413004.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229337180|gb|EEO02197.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 570

 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 436 DCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 483


>gi|261404674|ref|YP_003240915.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Paenibacillus sp. Y412MC10]
 gi|261281137|gb|ACX63108.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. Y412MC10]
          Length = 112

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV+VCP + F   E  L +    ++C  C +CE  CP DA+
Sbjct: 5  VSQQRCIECGL--CVKVCPTNVFDRTETGLPVIARQEDCQTCFICEAYCPADAL 56


>gi|187251479|ref|YP_001875961.1| putative Indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
          minutum Pei191]
 gi|186971639|gb|ACC98624.1| Putative indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
          minutum Pei191]
          Length = 56

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V  NC  C+ T     CPV    E +    I P  CIDCG C   CPV  I 
Sbjct: 9  VCINCGACEGT-----CPVSAISEQDGKRVIDPAVCIDCGACVSSCPVSCIS 55


>gi|50121944|ref|YP_051111.1| NADH dehydrogenase subunit I [Pectobacterium atrosepticum SCRI1043]
 gi|81693182|sp|Q6D2S4|NUOI_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49612470|emb|CAG75920.1| NADH-quinone oxidoreductase chain I [Pectobacterium atrosepticum
           SCRI1043]
          Length = 180

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|119776035|ref|YP_928775.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Shewanella
           amazonensis SB2B]
 gi|119768535|gb|ABM01106.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Shewanella
           amazonensis SB2B]
          Length = 230

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           +C  C+   CV VCP    Y  +    +A++ D C+ C  C   CP  V  I P+T 
Sbjct: 98  SCQHCEAAPCVRVCPTGAAYIDKETGIVAVNSDRCVGCQYCIAACPYQVRYIHPETR 154


>gi|51596492|ref|YP_070683.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 32953]
 gi|145598187|ref|YP_001162263.1| electron transport complex protein RnfB [Yersinia pestis Pestoides
           F]
 gi|153949540|ref|YP_001400870.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024242|ref|YP_001720747.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis YPIII]
 gi|186895542|ref|YP_001872654.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis PB1/+]
 gi|51589774|emb|CAH21404.1| putative iron-sulfur protein [Yersinia pseudotuberculosis IP 32953]
 gi|145209883|gb|ABP39290.1| iron-sulfur protein [Yersinia pestis Pestoides F]
 gi|152961035|gb|ABS48496.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750776|gb|ACA68294.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186698568|gb|ACC89197.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 207

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIE 163


>gi|325265432|ref|ZP_08132155.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
 gi|324029290|gb|EGB90582.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
          Length = 140

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI-KP 57
          M++ +T+ CI C  T C ++CPV    EG  +    I+   C++CGVC   C   AI   
Sbjct: 1  MSFFITDKCIGC--TLCRKLCPVG-AVEGNLKERHRINEKRCVECGVCGRVCKQKAILDQ 57

Query: 58 DTEPGLEL 65
          D +P LE+
Sbjct: 58 DGKPVLEV 65


>gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
 gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
          Length = 298

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C+   CV VCP        N + +   +C+ C  C   CP DA+  + E
Sbjct: 53  DKCIHCQ--QCVHVCPHGALTHQNNRILVDAKKCVGCLTCVHACPQDALTHEGE 104


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + Y +TE C  C  T C  VCPV         L  I  ++CI CG C  +C   AI
Sbjct: 539 LQYHITEQCKGC--TACARVCPVGAISGTVKALHTIDQEKCIKCGACMDKCKFAAI 592


>gi|284051681|ref|ZP_06381891.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Arthrospira
           platensis str. Paraca]
 gi|291570294|dbj|BAI92566.1| pyruvate flavodoxin oxidoreductase [Arthrospira platensis NIES-39]
          Length = 1193

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 24  DCFYEGENF-LAIHPDECIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYA 74
           D  +EG+ F + + P++C  CG+C   CP          AI  + +P +    + N E+ 
Sbjct: 729 DKAFEGQKFTIQVSPEDCTGCGICVDVCPAKNKSMPSKKAINMEYQPPIRATERDNWEFF 788

Query: 75  TQWPN 79
              PN
Sbjct: 789 LNLPN 793


>gi|268589520|ref|ZP_06123741.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
 gi|291315189|gb|EFE55642.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
          Length = 204

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163


>gi|167552275|ref|ZP_02346028.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323057|gb|EDZ10896.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 223

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAANGIVDVNPDLCVGCQYCIAACP 136


>gi|18313500|ref|NP_560167.1| formate dehydrogenase beta subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|18161039|gb|AAL64349.1| formate dehydrogenase beta subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 281

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           GE  + I+ +ECI CG CE  CP D  K  ++
Sbjct: 115 GEGAVVINKEECIGCGYCEAACPYDVPKKGSD 146


>gi|89896531|ref|YP_520018.1| hypothetical protein DSY3785 [Desulfitobacterium hafniense Y51]
 gi|89335979|dbj|BAE85574.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 90

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C    C+  CP  CF   +  +    + C++CG C   C  +A+K D   G
Sbjct: 28 CKSCGQQACLYFCPAGCFSLVDREVKFQYEGCLECGTCRVMCAHNALKWDYPQG 81


>gi|282855938|ref|ZP_06265229.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
 gi|282586157|gb|EFB91434.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
          Length = 596

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C++  CP   F + E  ++I   +C+ C VC   CPV AI
Sbjct: 543 EKCIGCKK--CLQTGCPALSFDKYERKVSIDRMQCVGCTVCAQVCPVKAI 590


>gi|255533088|ref|YP_003093460.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pedobacter heparinus DSM 2366]
 gi|255346072|gb|ACU05398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter
          heparinus DSM 2366]
          Length = 116

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2]
 gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++CI C   +CV  CP       EN +A    +CI+CG C   CP +A++
Sbjct: 55  QSCIGCG--ECVAACPEQALELNENGVARDLVKCINCGHCAEICPANAME 102


>gi|218886706|ref|YP_002436027.1| dimethylsulfoxide reductase, chain B [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757660|gb|ACL08559.1| dimethylsulfoxide reductase, chain B [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 205

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
            +Y ++ +C  C+   CV+ CP    ++ +N  +++ P +C+ C  C   CP  A
Sbjct: 59  FSYYLSVSCNHCEDPICVQSCPTTAMHQDKNGIVSVDPKKCVGCKYCSWGCPYGA 113


>gi|212711766|ref|ZP_03319894.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
 gi|212685288|gb|EEB44816.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
          Length = 200

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163


>gi|212634955|ref|YP_002311480.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212556439|gb|ACJ28893.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 181

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ +C+ C++  C+ VCP   ++   +  + +  ++C  CG+C   CP  A+    + G
Sbjct: 57  LSHSCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYSAVSIREDDG 115


>gi|217967483|ref|YP_002352989.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336582|gb|ACK42375.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 266

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 16  DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           DCV+ CP D  + GE+ L  I  ++C  CG+C   CP
Sbjct: 147 DCVKACPFDAIHMGEDGLPKIDMEKCTGCGLCVKACP 183


>gi|186920127|ref|YP_001874781.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
 gi|186461073|gb|ACC78235.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
          Length = 163

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP           Y+G        I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPAQAITIEAEPRYDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 118


>gi|119384970|ref|YP_916026.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
 gi|156633536|sp|A1B486|NUOI_PARDP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
          Full=NADH dehydrogenase I subunit 9; AltName: Full=NADH
          dehydrogenase I subunit I; AltName: Full=NADH-quinone
          oxidoreductase subunit 9; Short=NQO9; AltName:
          Full=NDH-1 subunit 9; AltName: Full=NDH-1 subunit I
 gi|119374737|gb|ABL70330.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
          Length = 163

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 40 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 85


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDT-EP 61
           LAI PD+C  CG C   CP  AI+  T EP
Sbjct: 570 LAIDPDKCRGCGKCRKICPASAIEGKTREP 599


>gi|241765323|ref|ZP_04763300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364961|gb|EER59886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 584

 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+C   CP +AI
Sbjct: 453 DRCTLC--LSCVSACPASALQDNPQLPQLRFIEQNCVQCGLCVTTCPENAI 501


>gi|237746743|ref|ZP_04577223.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
 gi|229378094|gb|EEO28185.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
          Length = 162

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 24/89 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN--------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP        GE            I   +CI CG+CE  CPVDAI 
Sbjct: 61  ERCIGCKL--CEAVCPAKAILIETGEREDGSRRTTRYEIDQSKCIFCGLCEEACPVDAIV 118

Query: 56  -----------KPDTEPGLELWLKINSEY 73
                      K D   G E+ L +   Y
Sbjct: 119 EIPMFEYSADEKGDLVFGKEVLLSVGKTY 147


>gi|163741480|ref|ZP_02148871.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
 gi|161385214|gb|EDQ09592.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
          Length = 164

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|154151379|ref|YP_001404997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999931|gb|ABS56354.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 428

 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 21/77 (27%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-------HP-----------DECIDCG 44
           Y+    C  C   DC+EVCPV+ +   +  + +       HP           + CI+CG
Sbjct: 93  YIDMVACTGCG--DCIEVCPVEVYNRFDAGVGVRKAIYKPHPQVVPDRVVKDNEHCIECG 150

Query: 45  VCEPEC-PVDAIKPDTE 60
           +C   C P   ++ DTE
Sbjct: 151 LCYDSCGPQAILREDTE 167


>gi|145616212|ref|XP_360940.2| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
 gi|145009964|gb|EDJ94620.1| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
          Length = 229

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 27/105 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E  +          I   +CI CG C+  CPVDAI 
Sbjct: 128 ERCIACKL--CEAVCPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 185

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                        N+EYAT+     T++E L +  K+     K+E
Sbjct: 186 ESP----------NAEYATE-----TREELLYNKEKLLSNGDKWE 215


>gi|126465802|ref|YP_001040911.1| ATPase RIL [Staphylothermus marinus F1]
 gi|126014625|gb|ABN70003.1| ABC transporter related [Staphylothermus marinus F1]
          Length = 601

 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 8/48 (16%)

Query: 16 DCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAI 55
          +C+  CPV+     +            I+ D CI CG+C  +CP +AI
Sbjct: 20 ECIRFCPVNKTKRKKAIELSPDGKHAVIYEDICIGCGICVKKCPFNAI 67


>gi|87118384|ref|ZP_01074283.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
 gi|86166018|gb|EAQ67284.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
          Length = 198

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  +  + CI C  T C++ CPVD      +    +  DEC  C +C   CPVD I
Sbjct: 106 VAVIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVEPCPVDCI 159


>gi|146278034|ref|YP_001168193.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025]
 gi|145556275|gb|ABP70888.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides
          ATCC 17025]
          Length = 167

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 44 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 89


>gi|319940638|ref|ZP_08014981.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319806004|gb|EFW02762.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 230

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-CFYEGE-NFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           + +  +C  C  + CV+VCP   C ++ E N + ++ D C+ C  C   CP +A  I P+
Sbjct: 93  HYIRVSCQQCVDSPCVKVCPTGACHHDPETNIVTMNTDRCVGCKYCIAACPYNARWINPE 152

Query: 59  TE 60
           T+
Sbjct: 153 TK 154


>gi|293416140|ref|ZP_06658780.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
 gi|291432329|gb|EFF05311.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
          Length = 644

 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV  CPV+      + + +   +CI C  C  +CP   ++
Sbjct: 61  CHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIDCPFGVVE 108


>gi|161505257|ref|YP_001572369.1| hypothetical protein SARI_03397 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866604|gb|ABX23227.1| hypothetical protein SARI_03397 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 223

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
            +C  C H  CV+VCP    +       + ++PD C+ C  C   CP
Sbjct: 90  HSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACP 136


>gi|52426419|ref|YP_089556.1| hydrogenase 2 protein HybA [Mannheimia succiniciproducens MBEL55E]
 gi|52308471|gb|AAU38971.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 330

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVQALTKNPKTGIVGYDPDICTGCRYCMVACPFDVPKYD 163


>gi|78224609|ref|YP_386356.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Geobacter
           metallireducens GS-15]
 gi|78195864|gb|ABB33631.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Geobacter
           metallireducens GS-15]
          Length = 1195

 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 23  VDCF---YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK--INSEYATQ 76
           VDC    ++G+   + + P++C  CG C   CP  + +      + +  +  + ++    
Sbjct: 731 VDCKVPEFKGQKLTVQVAPEDCTGCGACVHNCPAKSKEDPNHKAINMAFQAPLRAQEVAN 790

Query: 77  WPNITTKKESLPSAAKMDGVK 97
           W    T  +  P+ AK+D V+
Sbjct: 791 WDFFLTIPDVDPTVAKLDTVR 811


>gi|325959023|ref|YP_004290489.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330455|gb|ADZ09517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 342

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 9   CILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPV 52
           CI CK   C++ C V D  +E +N + I   +CI CG C   CPV
Sbjct: 132 CIRCKK--CMKTCKVGDAIFEEDNKIVIDQSKCISCGECLKTCPV 174


>gi|325277470|ref|ZP_08143076.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51]
 gi|324097399|gb|EGB95639.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51]
          Length = 141

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 14/66 (21%)

Query: 7  ENCILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 19 ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 76

Query: 57 --PDTE 60
            PD E
Sbjct: 77 LTPDFE 82


>gi|303239438|ref|ZP_07325965.1| nitrite and sulphite reductase 4Fe-4S region [Acetivibrio
           cellulolyticus CD2]
 gi|302593001|gb|EFL62722.1| nitrite and sulphite reductase 4Fe-4S region [Acetivibrio
           cellulolyticus CD2]
          Length = 317

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++C  CK     + CP++     +  L I+ + C +CG C+ +C  DAI+ D++ G +++
Sbjct: 172 DSCNGCKKCSIEDTCPMNAAKVVDGILEINKEICNNCGRCDGKCHFDAIE-DSKVGYKIY 230

Query: 67  L 67
           +
Sbjct: 231 I 231


>gi|304311502|ref|YP_003811100.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
 gi|301797235|emb|CBL45455.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
          Length = 185

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CP  C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 63  ERCVACNL--CAAACPAQCISLQKAERDDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 120

Query: 57  --PDTE 60
             PD E
Sbjct: 121 LTPDFE 126


>gi|261403601|ref|YP_003247825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370594|gb|ACX73343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 14/60 (23%)

Query: 8   NCILCKHTDCVEVCPVDCF------------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C+LC+   C++VCP++               +      +  D+C+ CGVC PECPV AI
Sbjct: 97  HCVLCQK--CIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAI 154


>gi|239502912|ref|ZP_04662222.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          AB900]
 gi|260554429|ref|ZP_05826650.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|260410971|gb|EEX04268.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
          Length = 87

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCDM--CLPECPNTAIFEGSKVYEIDPLRCTECVGFYAAPTCKEVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKQD 62


>gi|238751995|ref|ZP_04613480.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
 gi|238709829|gb|EEQ02062.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
          Length = 205

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +Y ++  C  C    CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D
Sbjct: 58  FSYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFD 117

Query: 59  TEPGL 63
               L
Sbjct: 118 ARKKL 122


>gi|113867168|ref|YP_725657.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525944|emb|CAJ92289.1| Predicted NADH:ubiquinone oxidoreductase,subunit RnfB [Ralstonia
           eutropha H16]
          Length = 269

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD      +    + PD C  C +C   CPVD I
Sbjct: 88  CIGC--TLCIQACPVDAIAGAAKQMHTVIPDWCTGCDLCVAPCPVDCI 133


>gi|88602962|ref|YP_503140.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88188424|gb|ABD41421.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 113

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 19 EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CP+D   E +    +  D CI CGVC   CP  AI
Sbjct: 37 ERCPMDAIVEEDGEFQVLNDRCIGCGVCIITCPSKAI 73


>gi|88811011|ref|ZP_01126267.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
 gi|88791550|gb|EAR22661.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
          Length = 277

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + ++    CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 110 VAWIDETACIGC--TRCIQACPVDAILGTAKQMHTVIRTECTGCALCIAPCPVDCI 163


>gi|312885487|ref|ZP_07745126.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Mucilaginibacter paludis DSM 18603]
 gi|311302067|gb|EFQ79097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Mucilaginibacter paludis DSM 18603]
          Length = 117

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|305663975|ref|YP_003860263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
 gi|304378544|gb|ADM28383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
          Length = 75

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV  E CI C    C  VCP   F    +  + I+ D+C+ C  C   CP +AI+
Sbjct: 5  VYVDQEKCIGCAQ--CYAVCPNKVFVIRDKKSIPINADKCVGCRACIVRCPTNAIR 58


>gi|237653652|ref|YP_002889966.1| electron transport complex, RnfABCDGE type subunit beta [Thauera
           sp. MZ1T]
 gi|237624899|gb|ACR01589.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp.
           MZ1T]
          Length = 179

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDT 59
           +  V T+ CI C    C++ CP D        L +  +E CI CG C   CP   I  + 
Sbjct: 104 LARVRTDACIGCSR--CIKSCPTDAILGATKQLHVVLEEACIGCGACAEVCPTGGIDLEG 161

Query: 60  EP 61
            P
Sbjct: 162 IP 163


>gi|226327835|ref|ZP_03803353.1| hypothetical protein PROPEN_01712 [Proteus penneri ATCC 35198]
 gi|225203539|gb|EEG85893.1| hypothetical protein PROPEN_01712 [Proteus penneri ATCC 35198]
          Length = 206

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    ++ E    + ++ D C+ C  CE  CP  A + D 
Sbjct: 60  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVNQDICVGCRYCELRCPYGAPQFDE 119

Query: 60  EPGL 63
           +  L
Sbjct: 120 KKKL 123


>gi|254458384|ref|ZP_05071809.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084692|gb|EDZ61979.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 565

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           NC LC    CV  C VD       +N L I+P  C  CG CE  CP
Sbjct: 428 NCTLC--LACVGACNVDALVANIDDNSLRINPSICTACGFCEVVCP 471


>gi|330999801|ref|ZP_08323506.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329573804|gb|EGG55393.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 231

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV+ CPV   Y+   +  + I  D+CI C  C   C   A KPD
Sbjct: 88  CNHCENPTCVKACPVKATYKRPEDGIVVIDYDKCIHCMNCTKACAYGARKPD 139


>gi|325830836|ref|ZP_08164220.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487243|gb|EGC89686.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 214

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+T+ C  C    C + CP  C  EG  + AI  + C+ CG+C   C   AI
Sbjct: 161 FVITDRCQECGA--CADACPEACIEEGPPY-AIVQEHCLRCGLCRETCSFGAI 210


>gi|325955102|ref|YP_004238762.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Weeksella virosa DSM 16922]
 gi|323437720|gb|ADX68184.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Weeksella virosa DSM 16922]
          Length = 116

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI+CG CEPECP +AI
Sbjct: 4  IITDECINCGACEPECPNNAI 24


>gi|319760609|ref|YP_004124547.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039323|gb|ADV33873.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 181

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 59  ERCVACNL--CAVSCPVGCISLKKSETIDGRWYPDFFRINFSRCIFCGMCEEACPTAAIQ 116


>gi|313205655|ref|YP_004044832.1| ferredoxin [Riemerella anatipestifer DSM 15868]
 gi|312444971|gb|ADQ81326.1| ferredoxin [Riemerella anatipestifer DSM 15868]
 gi|315022613|gb|EFT35639.1| Ferredoxin [Riemerella anatipestifer RA-YM]
 gi|325336903|gb|ADZ13177.1| ferredoxin [Riemerella anatipestifer RA-GD]
          Length = 116

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/21 (71%), Positives = 17/21 (80%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI+CG CEPECP +AI
Sbjct: 4  IITDECINCGACEPECPNNAI 24


>gi|291287814|ref|YP_003504630.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884974|gb|ADD68674.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 267

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 16  DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK--PDTEP 61
            CV+ C  D  Y G + +  I PD+C  CG C   CP   IK  P+ +P
Sbjct: 143 SCVKSCAFDAMYMGSDGIPVIIPDKCTSCGKCVAACPRKLIKLIPEDKP 191


>gi|227112320|ref|ZP_03825976.1| NADH dehydrogenase subunit I [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227326159|ref|ZP_03830183.1| NADH dehydrogenase subunit I [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|261820799|ref|YP_003258905.1| NADH dehydrogenase subunit I [Pectobacterium wasabiae WPP163]
 gi|261604812|gb|ACX87298.1| NADH-quinone oxidoreductase, chain I [Pectobacterium wasabiae
           WPP163]
          Length = 180

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|300778457|ref|ZP_07088315.1| ferredoxin 2 with 4Fe-4S binding domain protein [Chryseobacterium
          gleum ATCC 35910]
 gi|300503967|gb|EFK35107.1| ferredoxin 2 with 4Fe-4S binding domain protein [Chryseobacterium
          gleum ATCC 35910]
          Length = 116

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|237731324|ref|ZP_04561805.1| tetrathionate reductase subunit B [Citrobacter sp. 30_2]
 gi|226906863|gb|EEH92781.1| tetrathionate reductase subunit B [Citrobacter sp. 30_2]
          Length = 249

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 104 LCNHCDNPPCVPVCPVQATFQREDGIVVVDNTRCVGCAYCVQACPYDA 151


>gi|224825660|ref|ZP_03698764.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
 gi|224601884|gb|EEG08063.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
          Length = 232

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +  +  ++CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 78  LAVIQEDSCIGC--TLCIQACPVDAIVGAAKLMHTVIAAECTGCELCVAPCPVDCI 131


>gi|213022400|ref|ZP_03336847.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 217

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|148642366|ref|YP_001272879.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
          ATCC 35061]
 gi|261351019|ref|ZP_05976436.1| putative 4Fe-4S binding domain protein [Methanobrevibacter
          smithii DSM 2374]
 gi|148551383|gb|ABQ86511.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
          ATCC 35061]
 gi|288860359|gb|EFC92657.1| putative 4Fe-4S binding domain protein [Methanobrevibacter
          smithii DSM 2374]
          Length = 274

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          F+  +  +AI P  CI C +C  +CPVDAI+P
Sbjct: 37 FFSQKEIIAIAP-RCIRCNMCVDQCPVDAIEP 67


>gi|78188921|ref|YP_379259.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
 gi|78171120|gb|ABB28216.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
          Length = 199

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI----KPDTEPGL 63
           C+ C++T C+  CP    ++ ++  + ++ D CI C  C   CP DA       D E   
Sbjct: 60  CMHCENTPCMSACPTGATWKNKDGVILVNYDRCIGCYACCIACPYDARYAYNNHDVEEAE 119

Query: 64  ELWLKINSE 72
           +L+ K++S 
Sbjct: 120 KLYGKLSSH 128


>gi|15669493|ref|NP_248303.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474332|sp|Q58699|Y1303_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ1303
 gi|1591942|gb|AAB99312.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 501

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAIK 56
           CILC    CVE+CP D   + ENF  I   E         CI+CG+C   CP  A++
Sbjct: 229 CILC--LKCVEICPNDAL-KVENFKVIKVKEDKTSQPTSYCINCGLCAEHCPSGALR 282


>gi|89896185|ref|YP_519672.1| hypothetical protein DSY3439 [Desulfitobacterium hafniense Y51]
 gi|219668025|ref|YP_002458460.1| cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
 gi|89335633|dbj|BAE85228.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538285|gb|ACL20024.1| Cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
          Length = 287

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 11  LCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           LC   D C + C  +    G  +  + P  C  CGVC+  CP  AI        EL L I
Sbjct: 68  LCSQCDQCRQNCRFEAISAGSTY-RVDPFACEGCGVCQALCPAGAITLKPAAAGELMLYI 126

Query: 70  NSE 72
           + E
Sbjct: 127 HQE 129


>gi|307719316|ref|YP_003874848.1| transcriptional regulator containing a ferredoxin domain
          [Spirochaeta thermophila DSM 6192]
 gi|306533041|gb|ADN02575.1| putative transcriptional regulator containing a ferredoxin domain
          [Spirochaeta thermophila DSM 6192]
          Length = 706

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPEC 50
          C+ C    C+ VCPV    +G    + + P+ CI CG C   C
Sbjct: 15 CVSCHR--CIAVCPVKYANDGSGEVVEVRPELCIGCGECLKAC 55


>gi|300937183|ref|ZP_07152035.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300457737|gb|EFK21230.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 157

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|294341669|emb|CAZ90088.1| putative 4Fe-4S ferredoxin [Thiomonas sp. 3As]
          Length = 736

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH----PDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C LC    CV  CP       +N LA         C+ CG+C   CP DAI+   EP L 
Sbjct: 607 CTLC--LSCVGACPAGAL--ADNPLAPQLRFIEKNCVQCGLCVKTCPEDAIR--LEPRL- 659

Query: 65  LW 66
           LW
Sbjct: 660 LW 661


>gi|269122058|ref|YP_003310235.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
 gi|268615936|gb|ACZ10304.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
          Length = 488

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           C + CPVD     EN +AI    +CI+CG+C   CP  AI
Sbjct: 157 CKKSCPVDAIEIDENDIAIIDSTKCINCGLCINNCPFGAI 196


>gi|254173765|ref|ZP_04880437.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
 gi|214032457|gb|EEB73287.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
          Length = 635

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ + C  CK    +  CP   +    N + I    C  CGVC   CP DAIK
Sbjct: 574 VIEDRCTGCKACILLTGCPALVYDPETNKVRIDGLLCTGCGVCNQTCPFDAIK 626


>gi|170691508|ref|ZP_02882673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia graminis C4D1M]
 gi|170143713|gb|EDT11876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia graminis C4D1M]
          Length = 85

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|170680702|ref|YP_001744275.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
 gi|170518420|gb|ACB16598.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|189424213|ref|YP_001951390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189420472|gb|ACD94870.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 256

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 10  ILCKHTD---CVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGL 63
           +LC H     CV+ CPV     ++  + + +H DE CI C  C+  CP  A+    E   
Sbjct: 62  VLCNHCSDAPCVKACPVKPKAMFKTPDGITMHNDERCIGCRRCQKACPYSAMDVAKEKAE 121

Query: 64  ELWLKINSEYATQWPNITTK 83
              +  NS   T+ P+  ++
Sbjct: 122 YSVISANS--GTEAPHKASR 139


>gi|110680455|ref|YP_683462.1| NADH dehydrogenase subunit I [Roseobacter denitrificans OCh 114]
 gi|115502543|sp|Q163R7|NUOI_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
          Full=NADH dehydrogenase I subunit I; AltName:
          Full=NDH-1 subunit I
 gi|109456571|gb|ABG32776.1| NADH-quinone oxidoreductase chain I [Roseobacter denitrificans
          OCh 114]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|114319976|ref|YP_741659.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|123127335|sp|Q0AAG8|RNFB_ALHEH RecName: Full=Electron transport complex protein rnfB
 gi|114226370|gb|ABI56169.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 186

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +V    CI C  T C++ CPVD      +    +   EC  CG+C   CPVD I
Sbjct: 106 VAWVDEAVCIGC--TRCIQACPVDAILGAAKQMHTVLKGECTGCGLCVDPCPVDCI 159


>gi|325299224|ref|YP_004259141.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318777|gb|ADY36668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 260

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           V TENC  C   +CVEVCP        EN +    + CI C  C   CP  A
Sbjct: 186 VCTENCFGCG--ECVEVCPTHAIRLNAENVIETDINRCIRCCACVKACPNGA 235


>gi|315299687|gb|EFU58929.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
          Length = 459

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           ++C  C+   C++VCP    +  E   + +   +CI C  C   CP
Sbjct: 327 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACP 372


>gi|304314163|ref|YP_003849310.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587622|gb|ADL57997.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 366

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV   C  C   +CV  CPVD     +  + I  D CI C  C   CP      D E  +
Sbjct: 189 VVRGECTECG--ECVSECPVDAMTLHDGVM-IEYDRCIACMNCLDTCPRGVFDLDWERDI 245

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 246 PEFIERMMEYA 256


>gi|291522103|emb|CBK80396.1| electron transport complex, RnfABCDGE type, B subunit [Coprococcus
           catus GD/7]
          Length = 256

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 14  HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           H DC  VCP       +    I  D+C+ CG+C   CP   I
Sbjct: 140 HGDCAAVCPEKAIIVHDGLAMIDQDKCVGCGICVKTCPKHVI 181


>gi|253689141|ref|YP_003018331.1| NADH-quinone oxidoreductase, chain I [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755719|gb|ACT13795.1| NADH-quinone oxidoreductase, chain I [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 180

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQ 115

Query: 57  --PDTEPG 62
             PD E G
Sbjct: 116 LTPDFEMG 123


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + YV+   CI C  T C  +CP  C     +    I  ++CI CG C   C   AI  D
Sbjct: 558 IKYVINNKCIGC--TLCARICPESCITGSPKQRHYIDAEKCIKCGSCYEACKFHAINRD 614


>gi|163738809|ref|ZP_02146223.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
          BS107]
 gi|161388137|gb|EDQ12492.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
          BS107]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|159905592|ref|YP_001549254.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887085|gb|ABX02022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 161

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CI+C    C+EVCPV         +    D+C+ C  C   CPVDAIK
Sbjct: 36 ELCIMCDR--CLEVCPVTAISSNFPEVPHIDDKCVYCNTCVETCPVDAIK 83


>gi|126464923|ref|YP_001040032.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Staphylothermus marinus F1]
 gi|126013746|gb|ABN69124.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Staphylothermus marinus F1]
          Length = 161

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 17 CVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
          C  VCP +     +  +   ++PD+CI CGVC P+CP  A+
Sbjct: 45 CANVCPFNAIEMEKIYDLPRVNPDKCIGCGVCVPQCPGLAM 85


>gi|219850233|ref|YP_002464666.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aggregans DSM 9485]
 gi|219544492|gb|ACL26230.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aggregans DSM 9485]
          Length = 1029

 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECP 51
           Y++  NC+ C+   C  VCPV      YEG N +    + C+    C   CP
Sbjct: 844 YMMPVNCMQCEKAPCEVVCPVAATVHDYEGLNNMVY--NRCVGTKYCSNNCP 893


>gi|322832179|ref|YP_004212206.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
 gi|321167380|gb|ADW73079.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C    C +VCP    ++ E+ F+ ++ D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCADPACTKVCPSGAMHKREDGFVVVNEDICIGCRYCHMACPYGA 113


>gi|213420835|ref|ZP_03353901.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 169

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|154173868|ref|YP_001408698.1| sulfur reductase FeS subunit [Campylobacter curvus 525.92]
 gi|112802398|gb|EAT99742.1| sulfur reductase FeS subunit [Campylobacter curvus 525.92]
          Length = 188

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDT 59
           + ++C++C+ + CV+VCP    F   E    +    C+ C  C   CP DA  ++P T
Sbjct: 54  IRQSCVMCEDSPCVDVCPTGASFKTKEGVTLLDHRICVSCKYCILACPYDARFVEPKT 111


>gi|145756|gb|AAA83844.1| anaerobic dimethyl sulfoxide reductase [Escherichia coli]
          Length = 207

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|15800758|ref|NP_286772.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 EDL933]
 gi|15830234|ref|NP_309007.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. Sakai]
 gi|168752123|ref|ZP_02777145.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168756986|ref|ZP_02781993.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168762971|ref|ZP_02787978.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168769888|ref|ZP_02794895.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168776254|ref|ZP_02801261.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168783805|ref|ZP_02808812.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787323|ref|ZP_02812330.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168801423|ref|ZP_02826430.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|195939558|ref|ZP_03084940.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808514|ref|ZP_03250851.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815388|ref|ZP_03256567.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822781|ref|ZP_03263100.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399354|ref|YP_002269568.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325565|ref|ZP_03441649.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254792095|ref|YP_003076932.1| dimethyl sulfoxide reductase subunit B [Escherichia coli O157:H7
           str. TW14359]
 gi|261227400|ref|ZP_05941681.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256177|ref|ZP_05948710.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. FRIK966]
 gi|12514060|gb|AAG55382.1|AE005279_2 anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. EDL933]
 gi|13360439|dbj|BAB34403.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768357|gb|EDU32201.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188013963|gb|EDU52085.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188998922|gb|EDU67908.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189355906|gb|EDU74325.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189361185|gb|EDU79604.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189366789|gb|EDU85205.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372640|gb|EDU91056.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189376436|gb|EDU94852.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|208728315|gb|EDZ77916.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732036|gb|EDZ80724.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738266|gb|EDZ85949.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160754|gb|ACI38187.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209774998|gb|ACI85811.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775000|gb|ACI85812.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775002|gb|ACI85813.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775006|gb|ACI85815.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|217321786|gb|EEC30210.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254591495|gb|ACT70856.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. TW14359]
 gi|320192618|gb|EFW67259.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637765|gb|EFX07557.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. G5101]
 gi|320642889|gb|EFX12090.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H- str. 493-89]
 gi|320648346|gb|EFX17001.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H- str. H 2687]
 gi|320664277|gb|EFX31428.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326338209|gb|EGD62038.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|326346186|gb|EGD69924.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|83942660|ref|ZP_00955121.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
 gi|83846753|gb|EAP84629.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P+    CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|99080595|ref|YP_612749.1| NADH dehydrogenase subunit I [Ruegeria sp. TM1040]
 gi|115502544|sp|Q1GIM9|NUOI_SILST RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
          Full=NADH dehydrogenase I subunit I; AltName:
          Full=NDH-1 subunit I
 gi|99036875|gb|ABF63487.1| NADH-quinone oxidoreductase chain I [Ruegeria sp. TM1040]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|16128862|ref|NP_415415.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30062382|ref|NP_836553.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 2457T]
 gi|74311453|ref|YP_309872.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella sonnei
           Ss046]
 gi|89107745|ref|AP_001525.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. W3110]
 gi|91209998|ref|YP_539984.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           UTI89]
 gi|110804895|ref|YP_688415.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           5 str. 8401]
 gi|117623079|ref|YP_851992.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           APEC O1]
 gi|157158279|ref|YP_001462093.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|157160418|ref|YP_001457736.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|170020703|ref|YP_001725657.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|170080553|ref|YP_001729873.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170769322|ref|ZP_02903775.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|187732026|ref|YP_001880908.1| dimethylsulfoxide reductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|188494050|ref|ZP_03001320.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|191167581|ref|ZP_03029392.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|193064681|ref|ZP_03045760.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|193070738|ref|ZP_03051673.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194428398|ref|ZP_03060939.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194435161|ref|ZP_03067394.1| dimethylsulfoxide reductase, B subunit [Shigella dysenteriae 1012]
 gi|194438684|ref|ZP_03070771.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|209918144|ref|YP_002292228.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE11]
 gi|218553481|ref|YP_002386394.1| dimethyl sulfoxide reductase, anaerobic subunit B [Escherichia coli
           IAI1]
 gi|218557803|ref|YP_002390716.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli S88]
 gi|218688738|ref|YP_002396950.1| dimethyl sulfoxide reductase, anaerobic subunit B [Escherichia coli
           ED1a]
 gi|218694368|ref|YP_002402035.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli 55989]
 gi|218704324|ref|YP_002411843.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli UMN026]
 gi|237707115|ref|ZP_04537596.1| dimethylsulfoxide reductase [Escherichia sp. 3_2_53FAA]
 gi|238900153|ref|YP_002925949.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BW2952]
 gi|253774076|ref|YP_003036907.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161009|ref|YP_003044117.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli B str. REL606]
 gi|256020977|ref|ZP_05434842.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Shigella sp.
           D9]
 gi|256023404|ref|ZP_05437269.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia sp.
           4_1_40B]
 gi|260843145|ref|YP_003220923.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O103:H2 str. 12009]
 gi|260854186|ref|YP_003228077.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O26:H11 str. 11368]
 gi|260867067|ref|YP_003233469.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O111:H- str. 11128]
 gi|291281898|ref|YP_003498716.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. CB9615]
 gi|293409273|ref|ZP_06652849.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414177|ref|ZP_06656826.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|293433192|ref|ZP_06661620.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           B088]
 gi|298379983|ref|ZP_06989588.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           FVEC1302]
 gi|300817003|ref|ZP_07097222.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 107-1]
 gi|300823634|ref|ZP_07103761.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 119-7]
 gi|300901678|ref|ZP_07119736.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 198-1]
 gi|300902948|ref|ZP_07120892.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 84-1]
 gi|300921071|ref|ZP_07137455.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 115-1]
 gi|300926533|ref|ZP_07142322.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 182-1]
 gi|300929588|ref|ZP_07145051.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 187-1]
 gi|300937611|ref|ZP_07152420.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 21-1]
 gi|300949745|ref|ZP_07163722.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 116-1]
 gi|300954718|ref|ZP_07167153.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 175-1]
 gi|301022880|ref|ZP_07186713.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 69-1]
 gi|301024414|ref|ZP_07188099.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|301302498|ref|ZP_07208629.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 124-1]
 gi|301325782|ref|ZP_07219230.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 78-1]
 gi|301646340|ref|ZP_07246228.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|306812649|ref|ZP_07446842.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           NC101]
 gi|307137523|ref|ZP_07496879.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           H736]
 gi|307311718|ref|ZP_07591358.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|309795296|ref|ZP_07689714.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 145-7]
 gi|312971022|ref|ZP_07785201.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|331641416|ref|ZP_08342551.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331662310|ref|ZP_08363233.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331667269|ref|ZP_08368134.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331672436|ref|ZP_08373226.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA280]
 gi|331676681|ref|ZP_08377377.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331682404|ref|ZP_08383023.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332282202|ref|ZP_08394615.1| dimethyl sulfoxide reductase [Shigella sp. D9]
 gi|2506394|sp|P18776|DMSB_ECOLI RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|1651422|dbj|BAA35627.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K12 substr. W3110]
 gi|1787122|gb|AAC73981.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30040628|gb|AAP16359.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 2457T]
 gi|73854930|gb|AAZ87637.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella sonnei
           Ss046]
 gi|91071572|gb|ABE06453.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           UTI89]
 gi|110614443|gb|ABF03110.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           5 str. 8401]
 gi|115512203|gb|ABJ00278.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           APEC O1]
 gi|157066098|gb|ABV05353.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|157080309|gb|ABV20017.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|169755631|gb|ACA78330.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|169888388|gb|ACB02095.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170121974|gb|EDS90905.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|187429018|gb|ACD08292.1| dimethylsulfoxide reductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|188489249|gb|EDU64352.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|190902342|gb|EDV62080.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|192927738|gb|EDV82353.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|192955931|gb|EDV86399.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194413613|gb|EDX29894.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194416599|gb|EDX32735.1| dimethylsulfoxide reductase, B subunit [Shigella dysenteriae 1012]
 gi|194422316|gb|EDX38316.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|209775004|gb|ACI85814.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209911403|dbj|BAG76477.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE11]
 gi|218351100|emb|CAU96804.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli 55989]
 gi|218360249|emb|CAQ97799.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli IAI1]
 gi|218364572|emb|CAR02258.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli S88]
 gi|218426302|emb|CAR07127.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli ED1a]
 gi|218431421|emb|CAR12299.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli UMN026]
 gi|222032629|emb|CAP75368.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           LF82]
 gi|226898325|gb|EEH84584.1| dimethylsulfoxide reductase [Escherichia sp. 3_2_53FAA]
 gi|238860773|gb|ACR62771.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BW2952]
 gi|242376710|emb|CAQ31423.1| dimethyl sulfoxide reductase, chain B, subunit of dimethyl
           sulfoxide reductase [Escherichia coli BL21(DE3)]
 gi|253325120|gb|ACT29722.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972910|gb|ACT38581.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli B str. REL606]
 gi|253977124|gb|ACT42794.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BL21(DE3)]
 gi|257752835|dbj|BAI24337.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O26:H11 str. 11368]
 gi|257758292|dbj|BAI29789.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O103:H2 str. 12009]
 gi|257763423|dbj|BAI34918.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O111:H- str. 11128]
 gi|260449959|gb|ACX40381.1| dimethylsulfoxide reductase, chain B [Escherichia coli DH1]
 gi|281178029|dbj|BAI54359.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE15]
 gi|281600223|gb|ADA73207.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           2002017]
 gi|290761771|gb|ADD55732.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324011|gb|EFE63433.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           B088]
 gi|291434235|gb|EFF07208.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|291469741|gb|EFF12225.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491373|gb|ADE90129.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           IHE3034]
 gi|298279681|gb|EFI21189.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           FVEC1302]
 gi|299880386|gb|EFI88597.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|300318329|gb|EFJ68113.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 175-1]
 gi|300354902|gb|EFJ70772.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 198-1]
 gi|300397342|gb|EFJ80880.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 69-1]
 gi|300405009|gb|EFJ88547.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 84-1]
 gi|300411922|gb|EFJ95232.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 115-1]
 gi|300417450|gb|EFK00761.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 182-1]
 gi|300450859|gb|EFK14479.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 116-1]
 gi|300457341|gb|EFK20834.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 21-1]
 gi|300462476|gb|EFK25969.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 187-1]
 gi|300523834|gb|EFK44903.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 119-7]
 gi|300530355|gb|EFK51417.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 107-1]
 gi|300842337|gb|EFK70097.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 124-1]
 gi|300847425|gb|EFK75185.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 78-1]
 gi|301075443|gb|EFK90249.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|305853412|gb|EFM53851.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           NC101]
 gi|306908273|gb|EFN38772.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|307627675|gb|ADN71979.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           UM146]
 gi|308120946|gb|EFO58208.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 145-7]
 gi|309701171|emb|CBJ00471.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           ETEC H10407]
 gi|310336783|gb|EFQ01950.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|312945418|gb|ADR26245.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|313650193|gb|EFS14605.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2a str.
           2457T]
 gi|315060180|gb|ADT74507.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli W]
 gi|315135543|dbj|BAJ42702.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           DH1]
 gi|315257935|gb|EFU37903.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 85-1]
 gi|315287518|gb|EFU46929.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 110-3]
 gi|315296137|gb|EFU55446.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 16-3]
 gi|315619207|gb|EFU99786.1| dimethylsulfoxide reductase, chain B [Escherichia coli 3431]
 gi|320175336|gb|EFW50442.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella
           dysenteriae CDC 74-1112]
 gi|320202290|gb|EFW76861.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           EC4100B]
 gi|320654184|gb|EFX22252.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659808|gb|EFX27364.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|323157219|gb|EFZ43342.1| dimethylsulfoxide reductase, chain B [Escherichia coli EPECa14]
 gi|323159520|gb|EFZ45500.1| dimethylsulfoxide reductase, chain B [Escherichia coli E128010]
 gi|323165356|gb|EFZ51143.1| dimethylsulfoxide reductase, chain B [Shigella sonnei 53G]
 gi|323175008|gb|EFZ60623.1| dimethylsulfoxide reductase, chain B [Escherichia coli LT-68]
 gi|323175483|gb|EFZ61078.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1180]
 gi|323185399|gb|EFZ70763.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1357]
 gi|323379263|gb|ADX51531.1| dimethylsulfoxide reductase, chain B [Escherichia coli KO11]
 gi|323938001|gb|EGB34263.1| dimethylsulfoxide reductase [Escherichia coli E1520]
 gi|323942811|gb|EGB38976.1| dimethylsulfoxide reductase [Escherichia coli E482]
 gi|323947316|gb|EGB43324.1| dimethylsulfoxide reductase [Escherichia coli H120]
 gi|323953395|gb|EGB49261.1| dimethylsulfoxide reductase [Escherichia coli H252]
 gi|323958202|gb|EGB53911.1| dimethylsulfoxide reductase [Escherichia coli H263]
 gi|323962943|gb|EGB58516.1| dimethylsulfoxide reductase [Escherichia coli H489]
 gi|323967142|gb|EGB62566.1| dimethylsulfoxide reductase [Escherichia coli M863]
 gi|323973232|gb|EGB68424.1| dimethylsulfoxide reductase [Escherichia coli TA007]
 gi|323976718|gb|EGB71806.1| dimethylsulfoxide reductase [Escherichia coli TW10509]
 gi|324009810|gb|EGB79029.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 57-2]
 gi|324019014|gb|EGB88233.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 117-3]
 gi|324116108|gb|EGC10032.1| dimethylsulfoxide reductase [Escherichia coli E1167]
 gi|327253683|gb|EGE65312.1| dimethylsulfoxide reductase, chain B [Escherichia coli STEC_7v]
 gi|331038214|gb|EGI10434.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331060732|gb|EGI32696.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331065625|gb|EGI37518.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331070342|gb|EGI41707.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA280]
 gi|331075370|gb|EGI46668.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331080035|gb|EGI51214.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332091030|gb|EGI96120.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 155-74]
 gi|332104554|gb|EGJ07900.1| dimethyl sulfoxide reductase [Shigella sp. D9]
 gi|332342337|gb|AEE55671.1| dimethylsulfoxide reductase DmsB [Escherichia coli UMNK88]
 gi|332759810|gb|EGJ90113.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 4343-70]
 gi|332760458|gb|EGJ90747.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2747-71]
 gi|332768073|gb|EGJ98259.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2930-71]
 gi|333006981|gb|EGK26476.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-218]
 gi|333021020|gb|EGK40278.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-304]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|300712347|ref|YP_003738161.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halalkalicoccus jeotgali B3]
 gi|299126030|gb|ADJ16369.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halalkalicoccus jeotgali B3]
          Length = 224

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK-PDTEPGL 63
            C  C++  CV VCP +   + +N F+ +  D CI C  C   CP  A + P++  GL
Sbjct: 91  QCYHCENAPCVSVCPTNALQKKDNGFVEVVDDLCIGCQYCLSACPFGAPQFPESNEGL 148


>gi|294053884|ref|YP_003547542.1| DMSO reductase anchor subunit (DmsC) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613217|gb|ADE53372.1| DMSO reductase anchor subunit (DmsC) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 514

 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C    C+  CPV  + + E    +    D+CI C  C  +CP D  K     G
Sbjct: 96  VTTACHHCADPGCLNGCPVLAYEKDEETGIVRHLDDQCIGCQYCILKCPYDVPKYSESMG 155

Query: 63  L 63
           +
Sbjct: 156 I 156


>gi|296137471|ref|YP_003644713.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797593|gb|ADG32383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 311

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C+EVCP    ++ ++  + I  D C  CG C   CP DA
Sbjct: 149 CNHCERPSCIEVCPAGATWQRKDGIVEIDYDLCWGCGACVNACPYDA 195


>gi|253744913|gb|EET01048.1| RNase L inhibitor [Giardia intestinalis ATCC 50581]
          Length = 675

 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%)

Query: 16 DCVEVCPVD-----CFY---EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +C  +CPV+     C     EG     I    CI C +C  +CP DAIK
Sbjct: 29 ECKLLCPVNKTGKRCVVASSEGNKTAMISEKLCIGCDICVKKCPFDAIK 77


>gi|256810301|ref|YP_003127670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793501|gb|ACV24170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 405

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
           + YV+ E+ CI C+   C +VC V+     +      I P+ C+ CG CE ECPV AI+
Sbjct: 270 ICYVIDEDLCIGCRI--CQKVCHVNAVKISKEIKLPYIVPELCVACGACERECPVGAIR 326


>gi|242910167|ref|YP_002970696.1| photosystem I subunit VII [Alsophila spinulosa]
 gi|218454836|gb|ACK77173.1| photosystem I subunit VII [Alsophila spinulosa]
          Length = 81

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 5  VTENCILCKHTDCVEVCPVDCF----YEGENFLAIHP----DECIDCGVCEPECPVDAIK 56
          + + CI C  T CV  CP D      ++G     I P    ++C+ C  CE  CP D + 
Sbjct: 7  IYDTCIGC--TQCVRACPTDVLEMIPWDGCKANQIAPAPRTEDCVGCKRCESACPTDFLS 64

Query: 57 PDTEPGLELWLKINSEY 73
              PG E    +   Y
Sbjct: 65 VRVYPGAETTRSMGLAY 81


>gi|254519300|ref|ZP_05131356.1| polyferredoxin [Clostridium sp. 7_2_43FAA]
 gi|226913049|gb|EEH98250.1| polyferredoxin [Clostridium sp. 7_2_43FAA]
          Length = 265

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C   CP D  +   N   +  D+C++C +C  +CP  AIK
Sbjct: 215 CIGCKL--CERNCPKDAVHVTNNLAKVDYDKCVNCQLCTKKCPTGAIK 260


>gi|224367239|ref|YP_002601402.1| Fdx2 [Desulfobacterium autotrophicum HRM2]
 gi|223689955|gb|ACN13238.1| Fdx2 [Desulfobacterium autotrophicum HRM2]
          Length = 71

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          MT    + CI C    CV+ CP D      E E  +  +P +C  C +C   CPVDAI+ 
Sbjct: 1  MTIKSIKGCIGCG--TCVKTCPTDVIRLDPETEKAVIKYPADCQICHLCRMYCPVDAIRI 58

Query: 58 DTEPGL 63
            E  +
Sbjct: 59 SPEKSI 64


>gi|209519639|ref|ZP_03268429.1| ferredoxin [Burkholderia sp. H160]
 gi|209499925|gb|EDZ99990.1| ferredoxin [Burkholderia sp. H160]
          Length = 82

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 4  DECINCDVCEPECPNDAIS 22


>gi|149275883|ref|ZP_01882028.1| ferredoxin 2 with 4Fe-4S binding domain [Pedobacter sp. BAL39]
 gi|149233311|gb|EDM38685.1| ferredoxin 2 with 4Fe-4S binding domain [Pedobacter sp. BAL39]
          Length = 116

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|20808295|ref|NP_623466.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|20516898|gb|AAM25070.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
          Length = 156

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C   +C+  CP       +    I P++C DCG C   CPV AI
Sbjct: 106 VDEEKCIGC--GECLRFCPFKAIELKDGVAHIDPNKCRDCGRCIDVCPVGAI 155


>gi|84502622|ref|ZP_01000741.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
 gi|84389017|gb|EAQ01815.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIDAEP 86


>gi|320640865|gb|EFX10353.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           G5101]
          Length = 209

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + +
Sbjct: 70  FAYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMN 129

Query: 59  TEPG 62
            + G
Sbjct: 130 EQTG 133


>gi|313682582|ref|YP_004060320.1| 2-oxoglutarate ferredoxin oxidoreductase, delta subunit
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155442|gb|ADR34120.1| 2-oxoglutarate ferredoxin oxidoreductase, delta subunit
           [Sulfuricurvum kujiense DSM 16994]
          Length = 109

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF---YEGENFLAI-----HPDECIDCGVCEPECPVD 53
            +V T+NC  C    CV VCP       YE  + L       HP+ CI C  CE  CP  
Sbjct: 12  VWVNTDNCKACDI--CVSVCPSGVLGMRYEPTSTLGAMISIDHPESCIGCNECELTCPDF 69

Query: 54  AIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
           AI    +   +     +   A Q   I  K  SL  A 
Sbjct: 70  AIYVADKADYKFAKLTDDAKARQAAIIANKYMSLDQAG 107


>gi|294677802|ref|YP_003578417.1| dimethyl sulfoxide reductase subunit B [Rhodobacter capsulatus SB
           1003]
 gi|294476622|gb|ADE86010.1| dimethyl sulfoxide reductase, B subunit [Rhodobacter capsulatus SB
           1003]
          Length = 238

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             C+ C++  CV VCP     +  +  + I    C+ CG+C   CP  A + D   G+
Sbjct: 76  RTCVHCENPPCVPVCPTGASQQTADGLVQIDASRCLGCGLCAWACPYGARELDPVAGV 133


>gi|288573330|ref|ZP_06391687.1| Fe-S cluster domain protein [Dethiosulfovibrio peptidovorans DSM
          11002]
 gi|288569071|gb|EFC90628.1| Fe-S cluster domain protein [Dethiosulfovibrio peptidovorans DSM
          11002]
          Length = 436

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C++VCP +     +  + I P+ C+DCG C  +C   AI
Sbjct: 19 CIKVCPTEAMRVLDGKVMIIPELCVDCGECIRKCEDRAI 57


>gi|225376805|ref|ZP_03754026.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
 gi|225211301|gb|EEG93655.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
          Length = 375

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE CI C    C  +C        ++   I  D+C+ CG C   CP DAI  D    +
Sbjct: 191 VATEACIGCG--ACGRICAHGAPVITDHKAKIDHDKCVGCGRCLAVCPKDAISADYADSV 248

Query: 64  ELWLKINSEYA 74
            +     +EY+
Sbjct: 249 AMLNYKMAEYS 259


>gi|15832637|ref|NP_311410.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748420|ref|ZP_02773442.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756293|ref|ZP_02781300.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761131|ref|ZP_02786138.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768613|ref|ZP_02793620.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773565|ref|ZP_02798572.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778487|ref|ZP_02803494.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787867|ref|ZP_02812874.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC869]
 gi|168798892|ref|ZP_02823899.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC508]
 gi|195936663|ref|ZP_03082045.1| putative anaerobic dimethyl sulfoxide reductase chain B
           [Escherichia coli O157:H7 str. EC4024]
 gi|208806169|ref|ZP_03248506.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813124|ref|ZP_03254453.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821767|ref|ZP_03262087.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397819|ref|YP_002271991.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327591|ref|ZP_03443674.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794467|ref|YP_003079304.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223047|ref|ZP_05937328.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259402|ref|ZP_05951935.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283742|ref|YP_003500560.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415785|ref|ZP_06658428.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|331653949|ref|ZP_08354950.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|13362853|dbj|BAB36806.1| putative anaerobic dimethyl sulfoxide reductase chain B
           [Escherichia coli O157:H7 str. Sakai]
 gi|187770599|gb|EDU34443.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017042|gb|EDU55164.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003152|gb|EDU72138.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356621|gb|EDU75040.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362214|gb|EDU80633.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368397|gb|EDU86813.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372381|gb|EDU90797.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC869]
 gi|189378639|gb|EDU97055.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC508]
 gi|208725970|gb|EDZ75571.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734401|gb|EDZ83088.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741890|gb|EDZ89572.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159219|gb|ACI36652.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319958|gb|EEC28383.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593867|gb|ACT73228.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. TW14359]
 gi|290763615|gb|ADD57576.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433433|gb|EFF06412.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|320188854|gb|EFW63513.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320646308|gb|EFX15235.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H- str.
           493-89]
 gi|320651813|gb|EFX20193.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H- str.
           H 2687]
 gi|320657199|gb|EFX25008.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662805|gb|EFX30137.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667609|gb|EFX34524.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340319|gb|EGD64123.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|326345003|gb|EGD68747.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
 gi|331048798|gb|EGI20874.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
          Length = 209

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++ +C  C    C + CP    ++  G+  + ++ D+C+ CG C   CP  A + +
Sbjct: 70  FAYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMN 129

Query: 59  TEPG 62
            + G
Sbjct: 130 EQTG 133


>gi|24112270|ref|NP_706780.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 301]
 gi|33301071|sp|Q83RZ7|DMSB_SHIFL RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|24051122|gb|AAN42487.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 301]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|88858486|ref|ZP_01133128.1| putative 4Fe-4S ferredoxin [Pseudoalteromonas tunicata D2]
 gi|88820103|gb|EAR29916.1| putative 4Fe-4S ferredoxin [Pseudoalteromonas tunicata D2]
          Length = 82

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++   CI C    CV  CP +  + G     I P +C +C        C   CP+D 
Sbjct: 1  MALLINNKCINCDM--CVPECPNEAIFMGTKIYQIEPTKCTECIGHYDTPTCISVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|83953899|ref|ZP_00962620.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
 gi|83841844|gb|EAP81013.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P+    CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|323190717|gb|EFZ75986.1| dimethylsulfoxide reductase, chain B [Escherichia coli RN587/1]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|284920748|emb|CBG33811.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           042]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|269469205|gb|EEZ80741.1| adenylylsulfate reductase beta subunit [uncultured SUP05 cluster
          bacterium]
          Length = 111

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  C H  CV++CP D  +  + +   L I P+ C +C  C   CP  AI
Sbjct: 3  TFVYMTRCDGCGH--CVDICPSDIMHIDKKYRRALNIEPNMCWECYSCVKACPHQAI 57


>gi|255535196|ref|YP_003095567.1| Ferredoxin [Flavobacteriaceae bacterium 3519-10]
 gi|255341392|gb|ACU07505.1| Ferredoxin [Flavobacteriaceae bacterium 3519-10]
          Length = 116

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|239627164|ref|ZP_04670195.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239517310|gb|EEQ57176.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 198

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           MTY ++ + C  C   DC++ C  D       F+  I  DEC  CGVC   C  DAI
Sbjct: 125 MTYHILADKCTGC--GDCIDECEEDAIQGKSRFVHIILQDECTQCGVCLSACEEDAI 179


>gi|298530556|ref|ZP_07017958.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509930|gb|EFI33834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 247

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  CV  CP    Y+ E    + I+ D CI CG C   CP  A
Sbjct: 60  GCMHCDNPTCVHACPSGATYKEEETGIVQINKDMCIGCGNCVVACPYSA 108


>gi|215486024|ref|YP_002328455.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312969037|ref|ZP_07783244.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|215264096|emb|CAS08439.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312286439|gb|EFR14352.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|194445625|ref|YP_002042090.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404288|gb|ACF64510.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 180

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDAIKPDT 59
           + CI C    CV  CP +     E  LA        +   CI CG CE  CP  AIK   
Sbjct: 38  QQCIGC--AACVNACPSNAL-TVETLLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQ 94

Query: 60  EPGLELWLK 68
           E  L +W K
Sbjct: 95  EYELAVWKK 103


>gi|145590798|ref|YP_001152800.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum arsenaticum DSM 13514]
 gi|145282566|gb|ABP50148.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum arsenaticum DSM 13514]
          Length = 100

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPG-LELWLKINSEYA 74
          + I+ D CI CG C   CP  A+ PD E   + LW + N ++A
Sbjct: 4  VIIYRDNCIACGACITYCPYGALIPDEEGKPILLWDRCNDDFA 46


>gi|153214796|ref|ZP_01949625.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
 gi|124115138|gb|EAY33958.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
          Length = 553

 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 419 DCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|233599|gb|AAB19473.1| 30 kDa-A polypeptide of iron-sulfur protein fraction of
           NADH:ubiquinone oxidoreductase [cattle, heart, Peptide
           Mitochondrial Partial, 139 aa]
          Length = 139

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 10/51 (19%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCGVCEPECPVDAI 55
           IL K+   V+V    CF E E  + IHPD      CI CG C+  CPVDAI
Sbjct: 82  ILPKYVQQVQV---SCFNELE--ICIHPDGVIPVLCIYCGFCQEACPVDAI 127


>gi|50120807|ref|YP_049974.1| nitrite reductase complex component [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611333|emb|CAG74780.1| nitrite reductase complex component [Pectobacterium atrosepticum
           SCRI1043]
          Length = 223

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
            +C  C+++ CV+VCP    +       + ++PD C+ C  C   CP  V  I P T+
Sbjct: 90  HSCQHCENSPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYQVRFIHPQTK 147


>gi|332762950|gb|EGJ93200.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-671]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 113


>gi|325829783|ref|ZP_08163241.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
 gi|325487950|gb|EGC90387.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
          Length = 267

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +  CI C+   C + CP        N   I  D CI CG C   CP  AI 
Sbjct: 212 VCSVGCIGCQK--CAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAIS 262


>gi|260550890|ref|ZP_05825096.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|260406017|gb|EEW99503.1| ferredoxin [Acinetobacter sp. RUH2624]
          Length = 87

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I    C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCDM--CLPECPNTAIFEGSKVYEIDSSRCTECVGFYEAPTCKAVCPIDC 58

Query: 55 IKPD 58
          I+PD
Sbjct: 59 IEPD 62


>gi|288574319|ref|ZP_06392676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570060|gb|EFC91617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 62

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C+   CV  CPV+     +    +   +C++CG C   CPV+AI 
Sbjct: 14 ETCVGCES--CVGTCPVEAIEMNDGKAVVDEGKCVECGACVSACPVEAIS 61


>gi|237731458|ref|ZP_04561939.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
 gi|226906997|gb|EEH92915.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
          Length = 205

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + 
Sbjct: 59  FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNA 118

Query: 60  EPG 62
             G
Sbjct: 119 AKG 121


>gi|225028997|ref|ZP_03718189.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
 gi|224953695|gb|EEG34904.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
          Length = 506

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT--- 59
           V + N I+ +   C + C +      EN  A I  D+C+ CG+C   CP  AI   +   
Sbjct: 162 VCSYNAIIVQERPCAKACGMKAITSDENGKATIDYDKCVSCGMCLVNCPFGAISDKSQIY 221

Query: 60  ------EPGLELWLKINSEYATQW-PNITTKK 84
                 + G +++  +   +  Q+ P +T +K
Sbjct: 222 QVIKAIQSGEKVYAAVAPAFVGQFGPKVTPEK 253


>gi|213616092|ref|ZP_03371918.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 203

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 11  LCKHTD---CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           LC H D   CV VCPV   ++ E+  + +    C+ C  C   CP DA
Sbjct: 99  LCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDA 146


>gi|297578622|ref|ZP_06940550.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536216|gb|EFH75049.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 195

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIE 160


>gi|91781709|ref|YP_556915.1| ferredoxin [Burkholderia xenovorans LB400]
 gi|91685663|gb|ABE28863.1| Ferredoxin [Burkholderia xenovorans LB400]
          Length = 85

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|77164682|ref|YP_343207.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|254434195|ref|ZP_05047703.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Nitrosococcus oceani AFC27]
 gi|76882996|gb|ABA57677.1| Electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|207090528|gb|EDZ67799.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Nitrosococcus oceani AFC27]
          Length = 209

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 16/100 (16%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ EN CI C  T C++ CPVD        L  +   EC  C +C   CPVD I+     
Sbjct: 106 VIDENRCIGC--TLCIQACPVDAILGAPKQLHTVITAECTGCELCVAPCPVDCIE----- 158

Query: 62  GLELWLKINSEYAT-QWPNITTKKESLPSAA--KMDGVKQ 98
                + +  E  T +WP   T    LP AA  +++G+ +
Sbjct: 159 ----MVPVAPEPGTWKWPFPETTHPPLPIAAHKQIEGIDK 194


>gi|46581201|ref|YP_012009.1| ferredoxin [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601567|ref|YP_965967.1| ferredoxin [Desulfovibrio vulgaris DP4]
 gi|46450622|gb|AAS97269.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561796|gb|ABM27540.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio vulgaris DP4]
 gi|311234870|gb|ADP87724.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio vulgaris RCH1]
          Length = 295

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           DCVEVCP D  +       +   +C  CGVC   CP + ++
Sbjct: 145 DCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLE 185


>gi|254226570|ref|ZP_04920152.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
 gi|125620906|gb|EAZ49258.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
          Length = 553

 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 419 DCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|304397719|ref|ZP_07379596.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
 gi|304354891|gb|EFM19261.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
          Length = 192

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 VAFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 163


>gi|297516480|ref|ZP_06934866.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
          OP50]
          Length = 161

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A
Sbjct: 15 FAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGA 69


>gi|258515910|ref|YP_003192132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257779615|gb|ACV63509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 95

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 5  VTENCILCKHT-DCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +  N  LCK    CV +CP        F    +   ++P  CI CG C   CP  AI   
Sbjct: 24 MAVNTRLCKACWKCVSICPRGVIGKIRFLFHRHIYILNPGNCIGCGACAKACPEGAIIVL 83

Query: 59 TEPG 62
            PG
Sbjct: 84 KRPG 87


>gi|168242578|ref|ZP_02667510.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448985|ref|YP_002046809.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197251323|ref|YP_002147746.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197261856|ref|ZP_03161930.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204928218|ref|ZP_03219418.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224584625|ref|YP_002638423.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238909615|ref|ZP_04653452.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194407289|gb|ACF67508.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197215026|gb|ACH52423.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240111|gb|EDY22731.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204322540|gb|EDZ07737.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205338217|gb|EDZ24981.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224469152|gb|ACN46982.1| hydrogenase 4 Fe-S subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 180

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDAIKPDT 59
           + CI C    CV  CP +     E  LA        +   CI CG CE  CP  AIK   
Sbjct: 38  QQCIGC--AACVNACPSNAL-TVETLLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQ 94

Query: 60  EPGLELWLK 68
           E  L +W K
Sbjct: 95  EYELAVWKK 103


>gi|217974489|ref|YP_002359240.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
 gi|217499624|gb|ACK47817.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
          Length = 490

 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C+ C    CVEVCP     +  N L     ECI+CG C   C    +K D +P L
Sbjct: 289 DCVDCNL--CVEVCPTGI--DIRNGLQY---ECINCGACVDACNETMLKFDYKPNL 337


>gi|134298565|ref|YP_001112061.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051265|gb|ABO49236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 196

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           VV + C  C    CV  CP      GE    I   +C++CG C   CP  AI   T
Sbjct: 80  VVGDGCTACGL--CVSACPDQAIVLGEEGPCIVESQCLNCGKCAKICPTGAIYTGT 133


>gi|153801160|ref|ZP_01955746.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
 gi|124123280|gb|EAY42023.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
          Length = 553

 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +   +  A+     +C+ CG+C   CP  A+
Sbjct: 419 DCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQAL 466


>gi|86137588|ref|ZP_01056165.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
 gi|85825923|gb|EAQ46121.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
          Length = 165

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 42 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 87


>gi|238796067|ref|ZP_04639578.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
 gi|238720012|gb|EEQ11817.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
          Length = 693

 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C   CP     E  N + +  ++CI C  C   CP   +   TE
Sbjct: 68  CHHCEDAPCASTCPNGAIVEMNNSIQVIQEKCIGCKTCMIACPFGMMTVVTE 119


>gi|15641031|ref|NP_230662.1| electron transport complex protein RnfB [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587394|ref|ZP_01677164.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121729983|ref|ZP_01682400.1| RnfB-related protein [Vibrio cholerae V52]
 gi|147674952|ref|YP_001216488.1| electron transport complex protein RnfB [Vibrio cholerae O395]
 gi|153215075|ref|ZP_01949792.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|153800913|ref|ZP_01955499.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|153819293|ref|ZP_01971960.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|153823433|ref|ZP_01976100.1| RnfB-related protein [Vibrio cholerae B33]
 gi|153824911|ref|ZP_01977578.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|153829521|ref|ZP_01982188.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|227081190|ref|YP_002809741.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|229505385|ref|ZP_04394895.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229510945|ref|ZP_04400424.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229515402|ref|ZP_04404861.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229518066|ref|ZP_04407510.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229529891|ref|ZP_04419281.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229608404|ref|YP_002879052.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254291761|ref|ZP_04962547.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|254848146|ref|ZP_05237496.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255745441|ref|ZP_05419389.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262151307|ref|ZP_06028442.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262167227|ref|ZP_06034939.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262191541|ref|ZP_06049724.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|298498871|ref|ZP_07008678.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|17369129|sp|Q9KT87|RNFB_VIBCH RecName: Full=Electron transport complex protein rnfB
 gi|172047411|sp|A5F2R3|RNFB_VIBC3 RecName: Full=Electron transport complex protein rnfB
 gi|254807927|sp|C3LTR4|RNFB_VIBCM RecName: Full=Electron transport complex protein rnfB
 gi|9655480|gb|AAF94177.1| RnfB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548397|gb|EAX58459.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121628269|gb|EAX60782.1| RnfB-related protein [Vibrio cholerae V52]
 gi|124114938|gb|EAY33758.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|124123504|gb|EAY42247.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|126510153|gb|EAZ72747.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|126519042|gb|EAZ76265.1| RnfB-related protein [Vibrio cholerae B33]
 gi|146316835|gb|ABQ21374.1| RnfB-related protein [Vibrio cholerae O395]
 gi|148874981|gb|EDL73116.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|149741423|gb|EDM55453.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|150422354|gb|EDN14315.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|227009078|gb|ACP05290.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|227012833|gb|ACP09043.1| RnfB-related protein [Vibrio cholerae O395]
 gi|229333665|gb|EEN99151.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229344781|gb|EEO09755.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229347171|gb|EEO12131.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229350910|gb|EEO15851.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229357608|gb|EEO22525.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229371059|gb|ACQ61482.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254843851|gb|EET22265.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255736516|gb|EET91913.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262024371|gb|EEY43060.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262030923|gb|EEY49552.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262032595|gb|EEY51150.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|297543204|gb|EFH79254.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327483732|gb|AEA78139.1| Electron transport complex protein RnfB [Vibrio cholerae LMA3894-4]
          Length = 195

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+
Sbjct: 106 VAFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIE 160


>gi|330823669|ref|YP_004386972.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|329309041|gb|AEB83456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 687

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+CE  CP  AI
Sbjct: 556 DRCTLC--MSCVSACPASALQDNPQAPQLRFIERNCVQCGLCERTCPEGAI 604


>gi|332160309|ref|YP_004296886.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664539|gb|ADZ41183.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859581|emb|CBX69922.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica W22703]
          Length = 204

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C    C +VCP    ++ ++ F+ +  D CI C  C   CP  A + D 
Sbjct: 58  FAYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVSEDICIGCRYCHMACPYGAPQYDE 117

Query: 60  EPG 62
             G
Sbjct: 118 AKG 120


>gi|323701707|ref|ZP_08113378.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323533243|gb|EGB23111.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 92

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + Y +T  C  C    C +VCP    Y  E+   I+   C  CG C   CP  AI  +T+
Sbjct: 5  IQYFITNKCKNCAQ--CQDVCPEKAIYAAEDKYCINDARCNGCGSCVEICPEQAIVKETD 62


>gi|323141693|ref|ZP_08076571.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413849|gb|EFY04690.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 296

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)

Query: 8   NCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           N + C + D C+E C +DC + G++       ECI CG C   CPV AI
Sbjct: 249 NAVKCINCDRCMEHCKMDCRHVGDS-------ECIACGECRKVCPVKAI 290


>gi|318604458|emb|CBY25956.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 204

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             Y ++  C  C    C +VCP    ++ ++ F+ +  D CI C  C   CP  A + D 
Sbjct: 58  FAYYLSIACNHCSDPTCTKVCPTGAMHKRDDGFVVVSEDICIGCRYCHMACPYGAPQYDE 117

Query: 60  EPG 62
             G
Sbjct: 118 AKG 120


>gi|296116527|ref|ZP_06835137.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
          23769]
 gi|295976739|gb|EFG83507.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
          23769]
          Length = 162

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP +AI  + EP
Sbjct: 39 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEATCPAEAITIEAEP 84


>gi|261403853|ref|YP_003248077.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370846|gb|ACX73595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 206

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 10  ILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           I+C H   CV+VCP +   E      I  D+C+ CG+C   CP+  IK
Sbjct: 67  IICAHCGLCVDVCPTNAIIEDR--FTIDNDKCLKCGICVLVCPIPIIK 112


>gi|237747777|ref|ZP_04578257.1| electron transport complex protein [Oxalobacter formigenes OXCC13]
 gi|229379139|gb|EEO29230.1| electron transport complex protein [Oxalobacter formigenes OXCC13]
          Length = 220

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 15  TDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEPGLELW 66
           T C++ CPVD     G+    +  D C  C +C P CP+D I       T P  E+W
Sbjct: 95  TICIQACPVDAIVGTGKMMHTVINDYCTGCELCIPTCPLDCIGLKNMSATLPFSEVW 151


>gi|167042056|gb|ABZ06791.1| putative 4Fe-4S binding domain protein [uncultured marine
          microorganism HF4000_141I21]
          Length = 156

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  C H  CV++CP D  +  E     + I P+ C +C  C   CP +AI
Sbjct: 3  TFVYMTRCDGCGH--CVDICPSDIMHIDETIRRAVNIEPNFCWECYSCVKACPQNAI 57


>gi|153956228|ref|YP_001396993.1| hypothetical protein CKL_3632 [Clostridium kluyveri DSM 555]
 gi|219856551|ref|YP_002473673.1| hypothetical protein CKR_3208 [Clostridium kluyveri NBRC 12016]
 gi|146349086|gb|EDK35622.1| Conserved hypothetical protein, ferredoxin-related [Clostridium
           kluyveri DSM 555]
 gi|219570275|dbj|BAH08259.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 217

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ NC+ CK   C + C +    YE +N L  HPD CI CG C   CP  AI  D
Sbjct: 162 VSSNCVSCKL--CEKKCSLGIVPYEYKNDLLSHPD-CIQCGKCVIICPKKAIGYD 213


>gi|125577451|gb|EAZ18673.1| hypothetical protein OsJ_34194 [Oryza sativa Japonica Group]
          Length = 628

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+EV P            I  + CI CG+C  +CP DAI+
Sbjct: 38 CIEVTP------ASKLAFISEELCIGCGICVKKCPFDAIE 71


>gi|119872287|ref|YP_930294.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673695|gb|ABL87951.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum islandicum DSM 4184]
          Length = 592

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + P  C+ CGVC   CP +A K   E   E+WL+I
Sbjct: 556 VDPALCVGCGVCAEVCPFNAFK--LEGRKEIWLEI 588


>gi|39995884|ref|NP_951835.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens PCA]
 gi|39982648|gb|AAR34108.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens PCA]
 gi|298504898|gb|ADI83621.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens KN400]
          Length = 277

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPV 52
           E C+ C    C  VCPV  F +  E  +  H  +CI C  C   CP 
Sbjct: 82  EMCMHCNDPACASVCPVGAFEKTAEGPVVYHSKKCIGCRFCMVACPF 128


>gi|220931057|ref|YP_002507965.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
 gi|219992367|gb|ACL68970.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
          Length = 491

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VVT  C  C    CV  CP        N   +  ++C++CG+C   CP  AI
Sbjct: 115 VVTNACRNCVAHHCVNSCPRGAITIVNNQAYVIREKCVECGLCVKACPYGAI 166


>gi|87311263|ref|ZP_01093385.1| molybdopterin oxidoreductase, iron sulfur subunit [Blastopirellula
           marina DSM 3645]
 gi|87286003|gb|EAQ77915.1| molybdopterin oxidoreductase, iron sulfur subunit [Blastopirellula
           marina DSM 3645]
          Length = 536

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVD 53
           VT  C  C    C++ CPV  + +     + +H  D+CI C  C   CP D
Sbjct: 115 VTTACHHCADPGCLKGCPVKAYDKDPVTGIVVHLDDQCIGCKYCTMMCPYD 165


>gi|15641524|ref|NP_231156.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587222|ref|ZP_01676996.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|153818533|ref|ZP_01971200.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|153822815|ref|ZP_01975482.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227081674|ref|YP_002810225.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229508536|ref|ZP_04398039.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229511393|ref|ZP_04400872.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229518532|ref|ZP_04407975.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229607941|ref|YP_002878589.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254848637|ref|ZP_05237987.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262161670|ref|ZP_06030688.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|298498397|ref|ZP_07008204.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
 gi|9656020|gb|AAF94670.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548565|gb|EAX58619.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|126510936|gb|EAZ73530.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|126519674|gb|EAZ76897.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227009562|gb|ACP05774.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229343221|gb|EEO08196.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229351358|gb|EEO16299.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229354490|gb|EEO19413.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229370596|gb|ACQ61019.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254844342|gb|EET22756.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262028402|gb|EEY47057.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|297542730|gb|EFH78780.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
          Length = 553

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +  A+     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACP 462


>gi|296242763|ref|YP_003650250.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095347|gb|ADG91298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 160

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 17  CVEVCPVDCF----YEGE-------NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C +VCP  C      EG+        F  I   +C  CG+C   CPV A+   T  G EL
Sbjct: 51  CQQVCPAACIDMVVVEGDYSQNPRKRFPRIDHSKCTFCGLCVEYCPVAALSMTTVTGYEL 110

Query: 66  W 66
           +
Sbjct: 111 F 111


>gi|289548611|ref|YP_003473599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182228|gb|ADC89472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 232

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + + ++C+ C+   CV VCP    Y  E +  + ++ D+CI C +C   CP
Sbjct: 66  VFHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWSCP 117


>gi|239817316|ref|YP_002946226.1| 4Fe-4S ferredoxin, iron-sulfur binding [Variovorax paradoxus
          S110]
 gi|239803893|gb|ACS20960.1| 4Fe-4S ferredoxin, iron-sulfur binding [Variovorax paradoxus
          S110]
          Length = 95

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/18 (83%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+C VCEPECP DAI
Sbjct: 4  DECINCDVCEPECPNDAI 21


>gi|163732050|ref|ZP_02139496.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
 gi|161394348|gb|EDQ18671.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEP 86


>gi|157375933|ref|YP_001474533.1| aspartate carbamoyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318307|gb|ABV37405.1| aspartate carbamoyltransferase [Shewanella sediminis HAW-EB3]
          Length = 686

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 12  CKHTD---CVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C H D   C++ CP   + +   + A+   P+ C  CG C   CP +A + D   G
Sbjct: 164 CNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLDPVEG 219


>gi|254247589|ref|ZP_04940910.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
 gi|124872365|gb|EAY64081.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
          Length = 342

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD      +    I    C  C +C P CPVD I
Sbjct: 124 CIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCI 169


>gi|52550001|gb|AAU83850.1| acetyl-CoA decarbonylase/synthase subunit alpha [uncultured
           archaeon GZfos34G5]
          Length = 826

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 12  CKHTD-CVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C   D C+EVCP    +    +  + LA   D CI CG+CE  CP
Sbjct: 417 CNSCDICIEVCPNKQAISKAMDDVSALADIYDNCIFCGLCERACP 461


>gi|323699778|ref|ZP_08111690.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. ND132]
 gi|323459710|gb|EGB15575.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans ND132]
          Length = 141

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C E CP     +  +   I   + CI CG C   CPVDAI  D +
Sbjct: 54  CLACHPAPCAEACPTGSLSQRRDGGVIQKRNLCIRCGRCAEACPVDAIFLDHQ 106


>gi|300704663|ref|YP_003746266.1| 4fe-4S ferredoxin, iron-sulfur binding [Ralstonia solanacearum
           CFBP2957]
 gi|299072327|emb|CBJ43661.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CFBP2957]
          Length = 268

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK--P 57
           +  +  E+CI C  T C++ CPVD        +  +  D C  C +C   CPVD I   P
Sbjct: 82  LAVIDPEHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDMVP 139

Query: 58  DT--EPGLELWLKINSEYA 74
            T    G + W +  ++ A
Sbjct: 140 VTGERAGWDAWSQAQADAA 158


>gi|257790458|ref|YP_003181064.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
 gi|257474355|gb|ACV54675.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
          Length = 267

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +  CI C+   C + CP        N   I  D CI CG C   CP  AI 
Sbjct: 212 VCSVGCIGCQK--CAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAIS 262


>gi|159041649|ref|YP_001540901.1| thiamine pyrophosphate binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157920484|gb|ABW01911.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Caldivirga maquilingensis IC-167]
          Length = 606

 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 35  IHPDECIDCGVCEPECPVDAIKP 57
           I P+ C+ C VC   CP +AIKP
Sbjct: 570 IDPNMCVGCSVCAQVCPYNAIKP 592


>gi|187922588|ref|YP_001894230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phytofirmans PsJN]
 gi|187713782|gb|ACD15006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phytofirmans PsJN]
          Length = 85

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP DAI 
Sbjct: 7  DECINCDVCEPECPNDAIS 25


>gi|3355643|emb|CAA08780.1| tungsten formylmethanofuran dehydrogenase subunit fwdF
           [Methanothermobacter wolfeii]
          Length = 349

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP D                  + I  D CI CG+CE  CPVDAI+
Sbjct: 113 ETCIQCKA--CETACPQDAITITRELPERKDLVTGEIEIDKDTCIYCGMCEEMCPVDAIE 170

Query: 57  PD 58
            D
Sbjct: 171 ID 172


>gi|326381404|ref|ZP_08203098.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199651|gb|EGD56831.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 336

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP       E   + +  D C  CG C   CP   ++
Sbjct: 132 SDVCKHCTHAGCLDVCPTGAMMRTEFGTVVVQADICNGCGTCVAGCPFGVVE 183


>gi|297184133|gb|ADI20252.1| hypothetical protein [uncultured Sphingobacterium sp.
          EB080_L08E11]
          Length = 117

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|303239632|ref|ZP_07326157.1| hydrogenase large subunit domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302592803|gb|EFL62526.1| hydrogenase large subunit domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 446

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           T+C++ CP +     +    I  + CIDCG C   CP  A K  T+   ++      + A
Sbjct: 19  TNCIKRCPTEAIRVRKGKARIIAERCIDCGECIRVCPYHAKKAITDQ-FDIINNFKFKVA 77

Query: 75  TQWPNITTKKES------LPSAAKMDGVKQKYE 101
              P I  + +S      L +A K+ G    YE
Sbjct: 78  IPAPTIYGQFKSARSTNHLLTALKLIGFDHVYE 110


>gi|269139711|ref|YP_003296412.1| hydrogenase 2 protein [Edwardsiella tarda EIB202]
 gi|267985372|gb|ACY85201.1| hydrogenase 2 protein [Edwardsiella tarda EIB202]
 gi|304559580|gb|ADM42244.1| Hydrogenase-2 operon protein hybA precursor [Edwardsiella tarda
           FL6-60]
          Length = 327

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALRKDPKTGIVTYDPDVCTGCRYCMVACPFDVPKYD 164


>gi|209695338|ref|YP_002263267.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
 gi|226735410|sp|B6EGH6|RNFB_ALISL RecName: Full=Electron transport complex protein rnfB
 gi|208009290|emb|CAQ79556.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
          Length = 194

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + ++  + CI C  T C++ CPVD    G   L  +   EC  C +C   CP D I+
Sbjct: 106 IAFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIE 160


>gi|326800398|ref|YP_004318217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphingobacterium sp. 21]
 gi|326551162|gb|ADZ79547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphingobacterium sp. 21]
          Length = 117

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/18 (77%), Positives = 16/18 (88%)

Query: 38 DECIDCGVCEPECPVDAI 55
          DECI+CG CEPECP +AI
Sbjct: 7  DECINCGACEPECPNNAI 24


>gi|320546695|ref|ZP_08041006.1| 4Fe-4S ferredoxin, iron-sulfur binding [Streptococcus equinus ATCC
           9812]
 gi|320448574|gb|EFW89306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Streptococcus equinus ATCC
           9812]
          Length = 277

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDA 54
           +  V  +N   CK+     +CP+  F +  ++ A+     + D+CI CG C+  CP+D 
Sbjct: 194 LAVVFKDNRAFCKY-----LCPITVFLKPMSYFALFRVKCNKDKCISCGKCKKVCPMDV 247


>gi|269102700|ref|ZP_06155397.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162598|gb|EEZ41094.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 552

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++C LC    CV VCP    +   +    L I  D CI CG+C+  CP + I    EPG
Sbjct: 417 ADDCTLC--MGCVAVCPTRALHAIGDRPGLLFIEED-CIQCGMCQKACPENVIT--VEPG 471

Query: 63  L 63
            
Sbjct: 472 F 472


>gi|254512016|ref|ZP_05124083.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221535727|gb|EEE38715.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 164

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 19 EVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          E  P+   + GE+ L  +P   + CI C +CE  CP  AI  D EP
Sbjct: 41 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIDAEP 86


>gi|219853104|ref|YP_002467536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219547363|gb|ACL17813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 424

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 18/64 (28%)

Query: 16  DCVEVCPVDCFYEGE------------------NFLAIHPDECIDCGVCEPECPVDAIKP 57
           DC EVCPV+ +   +                  N +   PD CI+CG+C   C  +A+  
Sbjct: 109 DCEEVCPVEVYNRFDAGIGVRKAIYKPHAQVVPNIMIKDPDHCIECGLCYDICGRNAVLR 168

Query: 58  DTEP 61
           +  P
Sbjct: 169 EQSP 172


>gi|167628355|ref|YP_001678854.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
 gi|167591095|gb|ABZ82843.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
          Length = 374

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C+   C++ CP D     E    +  D+CI C  C+  CP  A++
Sbjct: 313 DKCIGCR--ICLQSCPADAL-RMERIPQLDKDKCIGCLCCQEMCPERAVE 359


>gi|167624839|ref|YP_001675133.1| dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
 gi|167354861|gb|ABZ77474.1| Dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
          Length = 221

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D
Sbjct: 77  FAYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQDLCIGCESCSRACPYDAPQID 136

Query: 59  TE 60
            E
Sbjct: 137 RE 138


>gi|111023805|ref|YP_706777.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226366241|ref|YP_002784024.1| ferredoxin [Rhodococcus opacus B4]
 gi|110823335|gb|ABG98619.1| probable ferredoxin [Rhodococcus jostii RHA1]
 gi|226244731|dbj|BAH55079.1| putative ferredoxin [Rhodococcus opacus B4]
          Length = 75

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 15 TDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAI 55
          T CVE+CP+D        G+ F+  H DEC  CG C   CP  A+
Sbjct: 24 TLCVEICPLDSLAINPENGKAFM--HVDECWYCGPCAARCPTGAV 66


>gi|89901860|ref|YP_524331.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346597|gb|ABD70800.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 545

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 11  LCKH--------TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           LC H        T C++VC V       N + I P  C  C  C   CP  A+
Sbjct: 168 LCAHGVSGFQGCTRCLDVCSVQAIASAGNTVRIDPYLCQGCATCTLACPTGAL 220


>gi|83643884|ref|YP_432319.1| ferredoxin [Hahella chejuensis KCTC 2396]
 gi|83631927|gb|ABC27894.1| Ferredoxin [Hahella chejuensis KCTC 2396]
          Length = 85

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          D+CI+C VCEPECP +AI P  E
Sbjct: 7  DDCINCDVCEPECPNEAISPGEE 29


>gi|56414800|ref|YP_151875.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363728|ref|YP_002143365.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129057|gb|AAV78563.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095205|emb|CAR60756.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 180

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDAIKPDT 59
           + CI C    CV  CP +     E  LA        +   CI CG CE  CP  AIK   
Sbjct: 38  QQCIGC--AACVNACPSNAL-TVETLLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQ 94

Query: 60  EPGLELWLK 68
           E  L +W K
Sbjct: 95  EYELAVWKK 103


>gi|50120165|ref|YP_049332.1| hydrogenase 2 protein HybA [Pectobacterium atrosepticum SCRI1043]
 gi|49610691|emb|CAG74136.1| hydrogenase-2 operon protein [Pectobacterium atrosepticum SCRI1043]
          Length = 336

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +  +   +H  PD C  C  C   CP +  K D
Sbjct: 114 IKKQCMHCVDPNCVSVCPVQALRKDAHTGIVHYDPDVCTGCRYCIVGCPFNVPKYD 169


>gi|163846207|ref|YP_001634251.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222523957|ref|YP_002568427.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus sp. Y-400-fl]
 gi|163667496|gb|ABY33862.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222447836|gb|ACM52102.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chloroflexus sp. Y-400-fl]
          Length = 1029

 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECP 51
           Y++  NC+ C+   C  VCPV      YEG N +    + C+    C   CP
Sbjct: 844 YMMPVNCMQCEKAPCEVVCPVAATVHDYEGLNNMVY--NRCVGTKYCSNNCP 893


>gi|219667305|ref|YP_002457740.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
 gi|219537565|gb|ACL19304.1| glycyl-radical enzyme activating protein family [Desulfitobacterium
           hafniense DCB-2]
          Length = 299

 Score = 33.5 bits (75), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
           CI C    CV  CP   F   E  L I   +C  CG+C  EC   +++     PD +  +
Sbjct: 54  CIKCG--TCVAKCPQQVFEIREGKLDITRQKCDFCGICVRECSTTSLEISGENPDFDKIM 111

Query: 64  ELWLKINSEYATQWPNIT-TKKESLPSAA 91
           E+ L+  S Y      +T +  E+L   A
Sbjct: 112 EIILQDKSYYDMSGGGVTLSGGEALAHRA 140


Searching..................................................done


Results from round 2




>gi|110635706|ref|YP_675914.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110286690|gb|ABG64749.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 138

 Score =  185 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 27  MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 86

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N++YA +WPNIT KKE    A   DG+++K+EKYFSP PG  +
Sbjct: 87  PGLEKWLQVNADYAEKWPNITAKKEPPADAKDWDGIEEKFEKYFSPEPGTGD 138


>gi|225628328|ref|ZP_03786362.1| Ferredoxin-2 [Brucella ceti str. Cudo]
 gi|225616174|gb|EEH13222.1| Ferredoxin-2 [Brucella ceti str. Cudo]
          Length = 138

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 27  MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 86

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 87  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLEQYFSPEAGSGD 138


>gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040093|gb|ACT56889.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 113

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT
Sbjct: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113


>gi|319409357|emb|CBI83001.1| ferredoxin II [Bartonella schoenbuchensis R1]
          Length = 112

 Score =  180 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 94/111 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N EYAT+WPN+TT+K  LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLETWLELNREYATKWPNLTTQKSPLPQAKEMDGVPNKLEKYFSENPGSG 111


>gi|49474701|ref|YP_032743.1| ferredoxin II [Bartonella quintana str. Toulouse]
 gi|6984158|gb|AAF34779.1|AF228062_1 ferredoxin II [Bartonella quintana]
 gi|49240205|emb|CAF26673.1| Ferredoxin II [Bartonella quintana str. Toulouse]
          Length = 112

 Score =  180 bits (457), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 94/111 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YV+T+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVITDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YAT+WPN+TT+K+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLHYATKWPNLTTRKDPLPQAKEMDGVANKLEKYFSENPGSG 111


>gi|227823779|ref|YP_002827752.1| putative ferredoxin protein [Sinorhizobium fredii NGR234]
 gi|227342781|gb|ACP26999.1| putative ferredoxin protein [Sinorhizobium fredii NGR234]
          Length = 112

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 99/112 (88%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL++WLK+N+++ATQWPNIT K++ LP A +MDGV+ KYE+YFS  PG  +
Sbjct: 61  PGLDMWLKLNADFATQWPNITVKRDPLPEAKEMDGVEGKYEQYFSEKPGQGD 112


>gi|240851256|ref|YP_002972659.1| ferredoxin II [Bartonella grahamii as4aup]
 gi|240268379|gb|ACS51967.1| ferredoxin II [Bartonella grahamii as4aup]
          Length = 113

 Score =  179 bits (456), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PDTE
Sbjct: 1   MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+TTKK+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGSG 111


>gi|163869172|ref|YP_001610424.1| ferredoxin II [Bartonella tribocorum CIP 105476]
 gi|161018871|emb|CAK02429.1| ferredoxin II [Bartonella tribocorum CIP 105476]
          Length = 113

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PDTE
Sbjct: 1   MTHVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIVPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+TTKK+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLHYANKWPNLTTKKDPLPQAKEMDGVPNKLEKYFSENPGSG 111


>gi|15967011|ref|NP_387364.1| putative ferredoxin protein [Sinorhizobium meliloti 1021]
 gi|307302479|ref|ZP_07582236.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti BL225C]
 gi|307316191|ref|ZP_07595635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti AK83]
 gi|15076284|emb|CAC47837.1| Putative ferredoxin protein [Sinorhizobium meliloti 1021]
 gi|306898031|gb|EFN28773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti AK83]
 gi|306903149|gb|EFN33739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           meliloti BL225C]
          Length = 112

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/112 (76%), Positives = 100/112 (89%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL++WLK+N+E++TQWPNIT K++ LP A +MDGV++KYEKYFS  PG  +
Sbjct: 61  PGLDMWLKLNAEFSTQWPNITVKRDPLPEAKEMDGVEEKYEKYFSSEPGQGD 112


>gi|254473211|ref|ZP_05086609.1| ferredoxin II [Pseudovibrio sp. JE062]
 gi|211957932|gb|EEA93134.1| ferredoxin II [Pseudovibrio sp. JE062]
          Length = 112

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE W+++N+EYA +WPN+T KK+ LP AA+ DGVK+K EKYFS  PG  +
Sbjct: 61  PGLEKWVELNAEYAEKWPNLTVKKDQLPEAAEFDGVKEKLEKYFSEKPGTGD 112


>gi|163853279|ref|YP_001641322.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|218532095|ref|YP_002422911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240140687|ref|YP_002965167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methylobacterium extorquens AM1]
 gi|254563202|ref|YP_003070297.1| ferredoxin II [Methylobacterium extorquens DM4]
 gi|163664884|gb|ABY32251.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
 gi|218524398|gb|ACK84983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240010664|gb|ACS41890.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methylobacterium extorquens AM1]
 gi|254270480|emb|CAX26480.1| ferredoxin II [Methylobacterium extorquens DM4]
          Length = 112

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++YA  WPNIT KK++   A + DGV  K E +FSPNPG  +
Sbjct: 61  GDLESWLKLNADYAKTWPNITQKKDAPSDAKQWDGVSGKLEAHFSPNPGSGD 112


>gi|220921711|ref|YP_002497012.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219946317|gb|ACL56709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 112

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N++ A  WPNIT KK +   A + DGV  KYE +FSPNPG  +
Sbjct: 61  PGLEKWLKLNADLAKSWPNITQKKPAPADAKEWDGVAGKYEAHFSPNPGSGD 112


>gi|49476178|ref|YP_034219.1| ferredoxin II [Bartonella henselae str. Houston-1]
 gi|49238986|emb|CAF28286.1| Ferredoxin II [Bartonella henselae str. Houston-1]
          Length = 112

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 94/111 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTDNCIHCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N +YA +WPN+TT+K+ LP A +MDG+  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLQYANKWPNLTTRKDPLPQAKEMDGIPDKLEKYFSENPGSG 111


>gi|150398307|ref|YP_001328774.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150029822|gb|ABR61939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 112

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 100/112 (89%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP  AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAGAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL++WLK+N++++TQWPNIT K++ LP A +MDG++ KYEKYFSP PG  +
Sbjct: 61  PGLDMWLKLNADFSTQWPNITVKRDPLPEATEMDGLEGKYEKYFSPEPGQGD 112


>gi|86359603|ref|YP_471495.1| ferredoxin III protein [Rhizobium etli CFN 42]
 gi|190893876|ref|YP_001980418.1| ferredoxin III protein [Rhizobium etli CIAT 652]
 gi|86283705|gb|ABC92768.1| ferredoxin III protein [Rhizobium etli CFN 42]
 gi|190699155|gb|ACE93240.1| ferredoxin III protein [Rhizobium etli CIAT 652]
          Length = 112

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/112 (76%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA+ WPNIT KK+ LP A +MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYASIWPNITVKKDPLPEAKEMDGQTGKFEKYFSEKPGSGD 112


>gi|209551386|ref|YP_002283303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537142|gb|ACI57077.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 112

 Score =  178 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KK+ LP A +MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKDPLPEAKEMDGETGKFEKYFSEKPGSGD 112


>gi|92119089|ref|YP_578818.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801983|gb|ABE64358.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 133

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AI  D+E
Sbjct: 22  MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIFADSE 81

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N+EYA  WPNIT K+++   A   DGV  K E+YFS NPG  +
Sbjct: 82  PGLENWLKLNAEYAAVWPNITIKRDAPADAKAFDGVADKLEQYFSANPGTGD 133


>gi|170742913|ref|YP_001771568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168197187|gb|ACA19134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 112

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WLK+N+++A  WPNIT KK +   A + DGV  K++ +FS NPG  +
Sbjct: 61  PGLERWLKLNADFAKNWPNITQKKTAPSDAKEWDGVAGKFDAHFSSNPGTGD 112


>gi|116254342|ref|YP_770180.1| ferredoxin II (FdII) [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258990|emb|CAK10099.1| putative ferredoxin II (FdII) [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 112

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/112 (77%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KK+ LP A  MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKDPLPEAKDMDGETGKFEKYFSEKPGSGD 112


>gi|153008467|ref|YP_001369682.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|239832850|ref|ZP_04681179.1| Ferredoxin-2 [Ochrobactrum intermedium LMG 3301]
 gi|151560355|gb|ABS13853.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|239825117|gb|EEQ96685.1| Ferredoxin-2 [Ochrobactrum intermedium LMG 3301]
          Length = 112

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K EKYFS  PG  +
Sbjct: 61  PGLDKWLELNTEYAAKWPNITAKKDALPEAKEMDGVAGKLEKYFSAEPGSGD 112


>gi|241206828|ref|YP_002977924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860718|gb|ACS58385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 112

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 88/112 (78%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYAT WPNIT KKE LP A  MDG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLKINTEYATIWPNITVKKEPLPEAKDMDGETGKFEKYFSEKPGSGD 112


>gi|27375268|ref|NP_766797.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27348404|dbj|BAC45422.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
          Length = 112

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N++YA  WPNIT KKES   A + DG++ K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLSVNADYAKSWPNITQKKESPADAKEFDGMEGKFEKYFSPNPGSGD 112


>gi|188583532|ref|YP_001926977.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179347030|gb|ACB82442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 112

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++YA  WPNIT KK++   A + DGV  K E +FSPNPG  +
Sbjct: 61  GNLESWLKLNADYAKTWPNITQKKDAPTDAKQWDGVGGKLEAHFSPNPGSGD 112


>gi|39933566|ref|NP_945842.1| ferredoxin II [Rhodopseudomonas palustris CGA009]
 gi|192288920|ref|YP_001989525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Rhodopseudomonas palustris TIE-1]
 gi|39647412|emb|CAE25933.1| ferredoxin II [Rhodopseudomonas palustris CGA009]
 gi|192282669|gb|ACE99049.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 112

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++NSEYA  WPN+T KK++   A + DG   K+EKYFS  PG  +
Sbjct: 61  PGLEKWLELNSEYAKTWPNLTQKKDAPADAKEFDGQAGKFEKYFSSEPGSGD 112


>gi|86747676|ref|YP_484172.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
 gi|86570704|gb|ABD05261.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
          Length = 112

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++NSEYA  WPN+T KK+S   A   DGV+ K+EK+FSP PG  +
Sbjct: 61  PGLEKWLELNSEYAKTWPNLTQKKDSPDDAKTFDGVEGKFEKFFSPEPGTGD 112


>gi|256061798|ref|ZP_05451933.1| Ferredoxin-2 [Brucella neotomae 5K33]
 gi|261325800|ref|ZP_05964997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella neotomae 5K33]
 gi|261301780|gb|EEY05277.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella neotomae 5K33]
          Length = 112

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLERYFSPEAGSGD 112


>gi|17986561|ref|NP_539195.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|23502624|ref|NP_698751.1| ferredoxin A [Brucella suis 1330]
 gi|62290637|ref|YP_222430.1| FdxA, ferredoxin A [Brucella abortus bv. 1 str. 9-941]
 gi|82700551|ref|YP_415125.1| 7Fe ferredoxin [Brucella melitensis biovar Abortus 2308]
 gi|148559196|ref|YP_001259611.1| ferredoxin A [Brucella ovis ATCC 25840]
 gi|161619692|ref|YP_001593579.1| ferredoxin-2 [Brucella canis ATCC 23365]
 gi|163845344|ref|YP_001622999.1| hypothetical protein BSUIS_B1243 [Brucella suis ATCC 23445]
 gi|189024849|ref|YP_001935617.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225853217|ref|YP_002733450.1| ferredoxin-2 [Brucella melitensis ATCC 23457]
 gi|237816138|ref|ZP_04595133.1| Ferredoxin-2 [Brucella abortus str. 2308 A]
 gi|254689926|ref|ZP_05153180.1| Ferredoxin-2 [Brucella abortus bv. 6 str. 870]
 gi|254694418|ref|ZP_05156246.1| Ferredoxin-2 [Brucella abortus bv. 3 str. Tulya]
 gi|254698077|ref|ZP_05159905.1| Ferredoxin-2 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700419|ref|ZP_05162247.1| Ferredoxin-2 [Brucella suis bv. 5 str. 513]
 gi|254703538|ref|ZP_05165366.1| Ferredoxin-2 [Brucella suis bv. 3 str. 686]
 gi|254708374|ref|ZP_05170202.1| Ferredoxin-2 [Brucella pinnipedialis M163/99/10]
 gi|254708773|ref|ZP_05170584.1| Ferredoxin-2 [Brucella pinnipedialis B2/94]
 gi|254719760|ref|ZP_05181571.1| Ferredoxin-2 [Brucella sp. 83/13]
 gi|254730961|ref|ZP_05189539.1| Ferredoxin-2 [Brucella abortus bv. 4 str. 292]
 gi|256030299|ref|ZP_05443913.1| Ferredoxin-2 [Brucella pinnipedialis M292/94/1]
 gi|256045368|ref|ZP_05448262.1| Ferredoxin-2 [Brucella melitensis bv. 1 str. Rev.1]
 gi|256114332|ref|ZP_05455070.1| Ferredoxin-2 [Brucella melitensis bv. 3 str. Ether]
 gi|256160472|ref|ZP_05458161.1| Ferredoxin-2 [Brucella ceti M490/95/1]
 gi|256255679|ref|ZP_05461215.1| Ferredoxin-2 [Brucella ceti B1/94]
 gi|256258181|ref|ZP_05463717.1| Ferredoxin-2 [Brucella abortus bv. 9 str. C68]
 gi|256263294|ref|ZP_05465826.1| 7Fe ferredoxin [Brucella melitensis bv. 2 str. 63/9]
 gi|256370173|ref|YP_003107684.1| ferredoxin A [Brucella microti CCM 4915]
 gi|260167973|ref|ZP_05754784.1| ferredoxin A [Brucella sp. F5/99]
 gi|260547125|ref|ZP_05822863.1| 7Fe ferredoxin [Brucella abortus NCTC 8038]
 gi|260565738|ref|ZP_05836221.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|260568844|ref|ZP_05839312.1| ferredoxin II [Brucella suis bv. 4 str. 40]
 gi|260755461|ref|ZP_05867809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 6 str. 870]
 gi|260758683|ref|ZP_05871031.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 4 str. 292]
 gi|260762518|ref|ZP_05874855.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884479|ref|ZP_05896093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 9 str. C68]
 gi|261214732|ref|ZP_05929013.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|261222885|ref|ZP_05937166.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti B1/94]
 gi|261315873|ref|ZP_05955070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M163/99/10]
 gi|261316266|ref|ZP_05955463.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis B2/94]
 gi|261750917|ref|ZP_05994626.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 5 str. 513]
 gi|261754171|ref|ZP_05997880.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 3 str. 686]
 gi|261757415|ref|ZP_06001124.1| 7Fe ferredoxin [Brucella sp. F5/99]
 gi|265984779|ref|ZP_06097514.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella sp. 83/13]
 gi|265987330|ref|ZP_06099887.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M292/94/1]
 gi|265991796|ref|ZP_06104353.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995636|ref|ZP_06108193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|265998844|ref|ZP_06111401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M490/95/1]
 gi|294851011|ref|ZP_06791687.1| ferredoxin [Brucella sp. NVSL 07-0026]
 gi|297249031|ref|ZP_06932739.1| ferredoxin-2 [Brucella abortus bv. 5 str. B3196]
 gi|306839456|ref|ZP_07472264.1| Ferredoxin-2 [Brucella sp. NF 2653]
 gi|306841481|ref|ZP_07474181.1| Ferredoxin-2 [Brucella sp. BO2]
 gi|306844752|ref|ZP_07477337.1| Ferredoxin-2 [Brucella sp. BO1]
 gi|17982169|gb|AAL51459.1| ferredoxin ii [Brucella melitensis bv. 1 str. 16M]
 gi|23348629|gb|AAN30666.1| ferredoxin A [Brucella suis 1330]
 gi|62196769|gb|AAX75069.1| FdxA, ferredoxin A [Brucella abortus bv. 1 str. 9-941]
 gi|82616652|emb|CAJ11734.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Brucella melitensis biovar Abortus 2308]
 gi|148370453|gb|ABQ60432.1| ferredoxin A [Brucella ovis ATCC 25840]
 gi|161336503|gb|ABX62808.1| Ferredoxin-2 [Brucella canis ATCC 23365]
 gi|163676067|gb|ABY40177.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189020421|gb|ACD73143.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225641582|gb|ACO01496.1| Ferredoxin-2 [Brucella melitensis ATCC 23457]
 gi|237788600|gb|EEP62813.1| Ferredoxin-2 [Brucella abortus str. 2308 A]
 gi|256000336|gb|ACU48735.1| ferredoxin A [Brucella microti CCM 4915]
 gi|260095490|gb|EEW79368.1| 7Fe ferredoxin [Brucella abortus NCTC 8038]
 gi|260151111|gb|EEW86206.1| ferredoxin II [Brucella melitensis bv. 1 str. 16M]
 gi|260154228|gb|EEW89310.1| ferredoxin II [Brucella suis bv. 4 str. 40]
 gi|260669001|gb|EEX55941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 4 str. 292]
 gi|260672944|gb|EEX59765.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675569|gb|EEX62390.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 6 str. 870]
 gi|260874007|gb|EEX81076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 9 str. C68]
 gi|260916339|gb|EEX83200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|260921469|gb|EEX88122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti B1/94]
 gi|261295489|gb|EEX98985.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis B2/94]
 gi|261304899|gb|EEY08396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M163/99/10]
 gi|261737399|gb|EEY25395.1| 7Fe ferredoxin [Brucella sp. F5/99]
 gi|261740670|gb|EEY28596.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 5 str. 513]
 gi|261743924|gb|EEY31850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella suis bv. 3 str. 686]
 gi|262553533|gb|EEZ09302.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M490/95/1]
 gi|262766920|gb|EEZ12538.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002752|gb|EEZ15155.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093261|gb|EEZ17358.1| 7Fe ferredoxin [Brucella melitensis bv. 2 str. 63/9]
 gi|264659527|gb|EEZ29788.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella pinnipedialis M292/94/1]
 gi|264663371|gb|EEZ33632.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella sp. 83/13]
 gi|294821654|gb|EFG38650.1| ferredoxin [Brucella sp. NVSL 07-0026]
 gi|297174164|gb|EFH33521.1| ferredoxin-2 [Brucella abortus bv. 5 str. B3196]
 gi|306274924|gb|EFM56694.1| Ferredoxin-2 [Brucella sp. BO1]
 gi|306288445|gb|EFM59801.1| Ferredoxin-2 [Brucella sp. BO2]
 gi|306405401|gb|EFM61672.1| Ferredoxin-2 [Brucella sp. NF 2653]
 gi|326409774|gb|ADZ66839.1| 7Fe ferredoxin [Brucella melitensis M28]
 gi|326539491|gb|ADZ87706.1| ferredoxin-2 [Brucella melitensis M5-90]
          Length = 112

 Score =  176 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++LP A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALPEAKEMDGVAGKLEQYFSPEAGSGD 112


>gi|319407755|emb|CBI81402.1| ferredoxin II [Bartonella sp. 1-1C]
          Length = 112

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 93/111 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDG+  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLRYAKKWPNLMTKKDPLPQAKEMDGIPNKLEKYFSENPGNG 111


>gi|222150213|ref|YP_002551170.1| ferredoxin [Agrobacterium vitis S4]
 gi|221737195|gb|ACM38158.1| ferredoxin [Agrobacterium vitis S4]
          Length = 116

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 99/112 (88%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 5   MTYIVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+E+A  WPNITTK+++LP A +MDGV+ K+E YFS  PG  +
Sbjct: 65  PGLDKWLKINAEFAQVWPNITTKRDALPEAKEMDGVEGKFELYFSEKPGTGD 116


>gi|170750106|ref|YP_001756366.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656628|gb|ACB25683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 112

 Score =  176 bits (448), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             L+ WLK+N++YA  WPNIT KKE+   A + DG   K E +FSPNPG  +
Sbjct: 61  SNLDTWLKLNADYAKSWPNITQKKEAPADAKEWDGKTGKLEAHFSPNPGSGD 112


>gi|118591278|ref|ZP_01548676.1| ferredoxin III protein [Stappia aggregata IAM 12614]
 gi|118435950|gb|EAV42593.1| ferredoxin III protein [Stappia aggregata IAM 12614]
          Length = 110

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/110 (73%), Positives = 95/110 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE W++IN+EY+ +WPNIT KK+ LP A + DG + K+EK+FSPNP  
Sbjct: 61  PGLEKWIEINAEYSEKWPNITEKKDPLPDAEEFDGKENKFEKFFSPNPAS 110


>gi|319406280|emb|CBI79917.1| ferredoxin II [Bartonella sp. AR 15-3]
          Length = 112

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/111 (74%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDGV  K E YFS NPG  
Sbjct: 61  PGLEKWLELNLNYANKWPNLMTKKDPLPQAKEMDGVLNKLETYFSENPGSG 111


>gi|316931530|ref|YP_004106512.1| ferredoxin [Rhodopseudomonas palustris DX-1]
 gi|315599244|gb|ADU41779.1| ferredoxin [Rhodopseudomonas palustris DX-1]
          Length = 112

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+E+A  WPN+T KK++   A + DG   K++KYFS  PG  +
Sbjct: 61  PGLEKWLELNAEHAKTWPNLTQKKDAPADAKEFDGQAGKFDKYFSSEPGSGD 112


>gi|319899400|ref|YP_004159497.1| ferredoxin II [Bartonella clarridgeiae 73]
 gi|319403368|emb|CBI76927.1| ferredoxin II [Bartonella clarridgeiae 73]
          Length = 112

 Score =  175 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M Y+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYIVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDGV  K EKYFS NPG  
Sbjct: 61  PGLEKWLELNLNYANKWPNLMTKKDPLPQAKEMDGVPDKLEKYFSENPGSG 111


>gi|115522155|ref|YP_779066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115516102|gb|ABJ04086.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+E+A  WPNIT KK++   A   DG + K++KYFS  PG  +
Sbjct: 61  PGLEQWLSLNAEHAKSWPNITQKKDAPADAKSFDGAEGKFDKYFSAEPGSGD 112


>gi|209883218|ref|YP_002287075.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
 gi|209871414|gb|ACI91210.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE WL +N+EYA  WPNIT KK+    A + DG + K+++YFSPNPG  +
Sbjct: 61  PDLEKWLGVNAEYAKTWPNITQKKDPPDDAKEFDGAEGKFDQYFSPNPGTGD 112


>gi|121602702|ref|YP_988462.1| ferredoxin [Bartonella bacilliformis KC583]
 gi|120614879|gb|ABM45480.1| ferredoxin [Bartonella bacilliformis KC583]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/110 (76%), Positives = 95/110 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE WL++N  YAT+WPN++T+K  LP A +MDG+  K EKYFS NPGG
Sbjct: 61  PGLEQWLELNLNYATKWPNLSTQKPPLPEAKEMDGIPNKLEKYFSENPGG 110


>gi|91974761|ref|YP_567420.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
 gi|91681217|gb|ABE37519.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
          Length = 112

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA  WPN+T KKE+   A + +G++ K+EK+FSP PG  +
Sbjct: 61  PGLEKWLELNTEYAKSWPNLTQKKEAPGDAKQYEGMEGKFEKFFSPEPGTGD 112


>gi|85713776|ref|ZP_01044766.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
 gi|85699680|gb|EAQ37547.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  174 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA  WPNIT KKE+ P A + +G + K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLEVNAEYAKSWPNITQKKEAPPDAKEFEGQEGKFEKYFSPNPGTGD 112


>gi|148258714|ref|YP_001243299.1| ferredoxin II [Bradyrhizobium sp. BTAi1]
 gi|146410887|gb|ABQ39393.1| ferredoxin II [Bradyrhizobium sp. BTAi1]
          Length = 112

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+EYA  WPNIT KK+    A + DG   K+EKYFSP PG  +
Sbjct: 61  PGLEKWLGVNAEYAKAWPNITQKKDPPGDAKEHDGEAGKFEKYFSPKPGAGD 112


>gi|254714616|ref|ZP_05176427.1| Ferredoxin-2 [Brucella ceti M644/93/1]
 gi|254717514|ref|ZP_05179325.1| Ferredoxin-2 [Brucella ceti M13/05/1]
 gi|261219349|ref|ZP_05933630.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M13/05/1]
 gi|261322410|ref|ZP_05961607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M644/93/1]
 gi|260924438|gb|EEX91006.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M13/05/1]
 gi|261295100|gb|EEX98596.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brucella ceti M644/93/1]
          Length = 112

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAISPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KK++L  A +MDGV  K E+YFSP  G  +
Sbjct: 61  PGLDKWLELNAEYAAKWPNITAKKDALLEAKEMDGVAGKLEQYFSPEAGSGD 112


>gi|254502406|ref|ZP_05114557.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438477|gb|EEE45156.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 110

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           PGLE W++IN+EY+ +WPNIT KK+ +P A K DG + K EKYFSPNP
Sbjct: 61  PGLEKWIEINAEYSEKWPNITEKKDPMPDADKFDGQENKLEKYFSPNP 108


>gi|92116127|ref|YP_575856.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91799021|gb|ABE61396.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 112

 Score =  174 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N++YA  WPN+T KK++ P A + +G + K+EKYFSPNPG  +
Sbjct: 61  PGLEKWLELNADYAKSWPNLTQKKDAPPDAKEFEGQEGKFEKYFSPNPGTGD 112


>gi|298293647|ref|YP_003695586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Starkeya
           novella DSM 506]
 gi|296930158|gb|ADH90967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Starkeya
           novella DSM 506]
          Length = 111

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 92/112 (82%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCV VCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVSVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL +N+EYA  WPNIT +K+ LP A + DGV  K + Y SP PG ++
Sbjct: 61  PGLDKWLSLNAEYAKVWPNITDRKDPLPDAKEWDGVPDKLQ-YLSPEPGKQD 111


>gi|307943599|ref|ZP_07658943.1| ferredoxin-1 [Roseibium sp. TrichSKD4]
 gi|307773229|gb|EFO32446.1| ferredoxin-1 [Roseibium sp. TrichSKD4]
          Length = 114

 Score =  174 bits (441), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/107 (74%), Positives = 92/107 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 5   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           PGLE W+++N+EY+ +WPNIT KK+ LP A + DG K K EKYFSPN
Sbjct: 65  PGLEKWIELNAEYSEKWPNITEKKDELPEAKEFDGKKDKLEKYFSPN 111


>gi|222087731|ref|YP_002546268.1| ferredoxin III protein [Agrobacterium radiobacter K84]
 gi|221725179|gb|ACM28335.1| ferredoxin III protein [Agrobacterium radiobacter K84]
          Length = 116

 Score =  173 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 98/112 (87%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NC+ CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 5   MTYVVTDNCVRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPAEAIKPDTE 64

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN++YA  WPNIT K+++LP A ++DG + K+EKYFS NPG  +
Sbjct: 65  PGLDKWLKINADYAAIWPNITVKRDALPEAKELDGEEGKFEKYFSANPGAGD 116


>gi|325294121|ref|YP_004279985.1| Ferredoxin [Agrobacterium sp. H13-3]
 gi|325061974|gb|ADY65665.1| Ferredoxin [Agrobacterium sp. H13-3]
          Length = 112

 Score =  173 bits (440), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 95/112 (84%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLK+N+EYA  WPNIT K++ LP A +MDGV  K E YFS  PG  +
Sbjct: 61  PGLDKWLKLNTEYAAIWPNITIKRDPLPEAKEMDGVTGKLELYFSAEPGKGD 112


>gi|299132817|ref|ZP_07026012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298592954|gb|EFI53154.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 112

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WL +N+EYA  WPNIT KK++   A + DG + K++ YFSPNPG  +
Sbjct: 61  ADLEKWLGVNAEYAKTWPNITQKKDAPADAKEFDGAEGKFDNYFSPNPGTGD 112


>gi|90422071|ref|YP_530441.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90104085|gb|ABD86122.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 112

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK+TDCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTEACIKCKYTDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EY+  WPNIT KK++   A + + V+ K++KYFS  PG  +
Sbjct: 61  PGLEKWLEVNAEYSKTWPNITQKKDAPADAKEFESVEGKFDKYFSAEPGTGD 112


>gi|315122140|ref|YP_004062629.1| putative ferredoxin protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495542|gb|ADR52141.1| putative ferredoxin protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 112

 Score =  173 bits (439), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 93/110 (84%), Positives = 103/110 (93%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCILCKHTDCVEVCPVDCFYEGENFL IHP+ECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTFVVTENCILCKHTDCVEVCPVDCFYEGENFLVIHPEECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           PGLE+WL+INS+Y++QWPNITTKK SLP+AA+MDGV+ KYE YFSP P  
Sbjct: 61  PGLEMWLQINSKYSSQWPNITTKKASLPNAAEMDGVENKYENYFSPKPAK 110


>gi|294678312|ref|YP_003578927.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
 gi|119953|sp|P18082|FER2_RHOCA RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II; Short=FdII
 gi|46012|emb|CAA37388.1| unnamed protein product [Rhodobacter capsulatus]
 gi|151914|gb|AAA26108.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
 gi|294477132|gb|ADE86520.1| ferredoxin II [Rhodobacter capsulatus SB 1003]
          Length = 112

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W++ N  YA+QWP IT KK+ +P   K DG   K EKYFSPNPG  +
Sbjct: 61  PGMEDWVEFNRTYASQWPVITIKKDPMPDHKKYDGETGKREKYFSPNPGTGD 112


>gi|75676994|ref|YP_319415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter winogradskyi
           Nb-255]
 gi|74421864|gb|ABA06063.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 112

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE WLK+N+EY+  WPNIT K+++   A   DGV  K E+YFS NPG  +
Sbjct: 61  PDLENWLKLNAEYSAVWPNITIKRDAPADAKTFDGVAGKLEQYFSANPGQGD 112


>gi|85714492|ref|ZP_01045480.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
 gi|85698939|gb|EAQ36808.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter sp. Nb-311A]
          Length = 112

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/112 (68%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG+N L I+PDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTFVVTENCIKCKYMDCVEVCPVDCFYEGDNMLVINPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE WLK+N+EYA  WPNIT K+++   A   DGV  K E+YFS NPG  +
Sbjct: 61  PDLENWLKLNAEYAAVWPNITIKRDAPADAKTFDGVAGKLEQYFSANPGQGD 112


>gi|323138997|ref|ZP_08074057.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylocystis sp. ATCC 49242]
 gi|322395751|gb|EFX98292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylocystis sp. ATCC 49242]
          Length = 112

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WLK+N++ A  WPNIT K+E    A + DG   K+E +FS  PG  +
Sbjct: 61  ENLEQWLKLNADMAQNWPNITIKREPPADAKEWDGKPGKFEAHFSAEPGQGD 112


>gi|328542019|ref|YP_004302128.1| Ferredoxin II [polymorphum gilvum SL003B-26A1]
 gi|326411769|gb|ADZ68832.1| Ferredoxin II [Polymorphum gilvum SL003B-26A1]
          Length = 112

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/107 (75%), Positives = 93/107 (86%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           PGLE W++IN+EYA +WPNIT KK+ LP AA+ DG   K+E+YFSPN
Sbjct: 61  PGLEKWIEINAEYAAKWPNITVKKDPLPEAAEFDGKAGKFEQYFSPN 107


>gi|159185361|ref|NP_355681.2| ferredoxin [Agrobacterium tumefaciens str. C58]
 gi|159140612|gb|AAK88466.2| ferredoxin [Agrobacterium tumefaciens str. C58]
          Length = 112

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/112 (75%), Positives = 96/112 (85%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA  WPNIT K++ +P A +MDGV+ K E YFS  PG  +
Sbjct: 61  PGLDKWLKINTEYAAIWPNITIKRDPMPEAKEMDGVEGKLELYFSAEPGKGD 112


>gi|297180169|gb|ADI16391.1| ferredoxin [uncultured bacterium HF130_12L15]
          Length = 112

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA +WPNIT KKE    A + DGV+ K+EKYFS   G  +
Sbjct: 61  PGLEKWLQVNTEYADKWPNITAKKEPPADAKEFDGVEGKFEKYFSAEAGEGD 112


>gi|13473302|ref|NP_104869.1| ferredoxin II [Mesorhizobium loti MAFF303099]
 gi|14024050|dbj|BAB50655.1| ferredoxin II [Mesorhizobium loti MAFF303099]
          Length = 112

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL+IN+EYA +WPNIT KKE    A   DG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLQINTEYAEKWPNITAKKEPPADAKTFDGEAGKFEKYFSAEPGEGD 112


>gi|154252147|ref|YP_001412971.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Parvibaculum lavamentivorans DS-1]
 gi|154156097|gb|ABS63314.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 112

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYIVTDACIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL++N+EYA++WPNIT K++    A    GV  K+E++FS  PG  +
Sbjct: 61  PGLEKWLELNTEYASKWPNITIKRDPPADADDWQGVSGKFEEHFSAEPGEGD 112


>gi|319404795|emb|CBI78396.1| ferredoxin II [Bartonella rochalimae ATCC BAA-1498]
          Length = 112

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/111 (73%), Positives = 92/111 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIQCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           PGLE WL++N  YA +WPN+ TKK+ LP A +MDG+  K EK FS NPG  
Sbjct: 61  PGLEKWLELNLRYAKKWPNLMTKKDPLPQAKEMDGIPNKLEKCFSENPGNG 111


>gi|148556440|ref|YP_001264022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingomonas wittichii RW1]
 gi|148501630|gb|ABQ69884.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sphingomonas
           wittichii RW1]
          Length = 112

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N+ +A QWPNIT K+E+   A +   V+ KYEK+FSP PG  +
Sbjct: 61  SGLEQWLELNNTFAAQWPNITRKREAPADADEWKNVEGKYEKHFSPEPGQGD 112


>gi|260434065|ref|ZP_05788036.1| ferredoxin-1 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417893|gb|EEX11152.1| ferredoxin-1 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 112

 Score =  171 bits (433), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W++ N +YA  WP I +KK+ LP A K DG + K EKYFS  PG   
Sbjct: 61  PGMEQWVEFNRKYAEIWPVIVSKKDPLPDAEKHDGEEGKMEKYFSEAPGEGG 112


>gi|119384563|ref|YP_915619.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Paracoccus denitrificans PD1222]
 gi|119374330|gb|ABL69923.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Paracoccus
           denitrificans PD1222]
          Length = 112

 Score =  170 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/112 (68%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI+CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIMCKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP IT KK+ +P   +MDG   K EKYFS  PG  +
Sbjct: 61  PDMDKWVEFNRKYAESWPVITRKKDPMPGYQEMDGAPGKLEKYFSEAPGEGD 112


>gi|319781059|ref|YP_004140535.1| ferredoxin II [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166947|gb|ADV10485.1| ferredoxin II [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 112

 Score =  170 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WL++N+EYA +WPNIT KKE    A   DG   K+EKYFS  PG  +
Sbjct: 61  PGLDKWLQVNTEYAEKWPNITAKKEPPADAKSFDGEAGKFEKYFSAEPGEGD 112


>gi|114706527|ref|ZP_01439428.1| ferredoxin II [Fulvimarina pelagi HTCC2506]
 gi|114537919|gb|EAU41042.1| ferredoxin II [Fulvimarina pelagi HTCC2506]
          Length = 112

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 92/112 (82%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYLVTDNCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLKIN+EYA +WPNIT  KE    A K DG + K+EKYFS  PG  +
Sbjct: 61  PGLDHWLKINTEYAEKWPNITIAKEKPEDAEKYDGEEGKFEKYFSAEPGSGD 112


>gi|260461458|ref|ZP_05809705.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032528|gb|EEW33792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 112

 Score =  170 bits (432), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DC+EVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTDNCIKCKYMDCIEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL+ WL+IN+EYA +WPNIT KKE    A   DG   K+EKYFS  PG  +
Sbjct: 61  SGLDKWLQINTEYAEKWPNITAKKEPPADAKTFDGEAGKFEKYFSAEPGEGD 112


>gi|300024664|ref|YP_003757275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526485|gb|ADJ24954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 112

 Score =  170 bits (431), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV E CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVNEKCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL++N +YA  WPNIT KK +LP A  +     K+EKYFSPN G  +
Sbjct: 61  PGMERWLELNRQYADNWPNITAKKAALPDADDIKDEPGKFEKYFSPNAGSGD 112


>gi|159043337|ref|YP_001532131.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911097|gb|ABV92530.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 112

 Score =  169 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/112 (68%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEAWPVIITKKDQLPDAEERDGEQGKLEKYFSEAPGEGG 112


>gi|75674609|ref|YP_317030.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter winogradskyi
           Nb-255]
 gi|74419479|gb|ABA03678.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 112

 Score =  169 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 94/112 (83%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD+E
Sbjct: 1   MTYVVNDACIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL++N+EYA +WPNIT KKE+ P A   +G + K+EKYFSP+PG  +
Sbjct: 61  PGVEKWLEVNAEYAGRWPNITQKKETPPDAKDFEGQEGKFEKYFSPDPGTGD 112


>gi|149916594|ref|ZP_01905108.1| ferredoxin II [Roseobacter sp. AzwK-3b]
 gi|149809521|gb|EDM69381.1| ferredoxin II [Roseobacter sp. AzwK-3b]
          Length = 112

 Score =  169 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ +P A + DG + K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQMPDAEERDGEEGKLEKYFSEKPGEGG 112


>gi|90420289|ref|ZP_01228197.1| ferredoxin II [Aurantimonas manganoxydans SI85-9A1]
 gi|90335623|gb|EAS49373.1| ferredoxin II [Aurantimonas manganoxydans SI85-9A1]
          Length = 112

 Score =  169 bits (430), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+ DCVEVCPVDCFYEG+N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYLVTDNCIRCKYMDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P L+ WLKIN+EYA +WPNIT K+++   A K DG   K+EKYFS  PG  +
Sbjct: 61  PNLDKWLKINTEYAEKWPNITIKRDAPADAEKFDGEDGKFEKYFSAEPGQGD 112


>gi|158421856|ref|YP_001523148.1| ferredoxin II [Azorhizobium caulinodans ORS 571]
 gi|158328745|dbj|BAF86230.1| ferredoxin II [Azorhizobium caulinodans ORS 571]
          Length = 111

 Score =  169 bits (430), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 80/112 (71%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCILCK+TDCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MAYVVTENCILCKYTDCVAVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGLE WL +N+EYA  WPNIT K+++LP A + DG   K +K FS  PG  +
Sbjct: 61  PGLEKWLSLNAEYAKTWPNITLKRDALPDAKEWDGKPGKEDK-FSAEPGTGD 111


>gi|307294531|ref|ZP_07574373.1| ferredoxin [Sphingobium chlorophenolicum L-1]
 gi|306879005|gb|EFN10223.1| ferredoxin [Sphingobium chlorophenolicum L-1]
          Length = 112

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/111 (64%), Positives = 90/111 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            GLE WL++N++++ +WPNIT K ++   A  M GV+ K+E++FSP PG  
Sbjct: 61  NGLEKWLELNTKFSAEWPNITVKGDAPADADDMKGVENKFEQFFSPEPGAG 111


>gi|296447998|ref|ZP_06889904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylosinus
           trichosporium OB3b]
 gi|296254508|gb|EFH01629.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylosinus
           trichosporium OB3b]
          Length = 112

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 84/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEG N L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MPYVVTENCIKCKYMDCVEVCPVDCFYEGVNMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P LE W+ +N+EYA  WPN+T K++    A + DG   K E  FSP PG  +
Sbjct: 61  PDLEKWMALNAEYAQVWPNVTIKRDPPADAKEWDGKPGKLESGFSPEPGQGD 112


>gi|163759999|ref|ZP_02167083.1| ferredoxin II [Hoeflea phototrophica DFL-43]
 gi|162282957|gb|EDQ33244.1| ferredoxin II [Hoeflea phototrophica DFL-43]
          Length = 112

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E WL +N+EYA +WPNIT K+++   A   DG + K+EKYFS  PG  +
Sbjct: 61  PGMEKWLVVNTEYADKWPNITVKRDAPDDAKDFDGTEGKFEKYFSAEPGEGD 112


>gi|154246582|ref|YP_001417540.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xanthobacter autotrophicus Py2]
 gi|154160667|gb|ABS67883.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 111

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPD E
Sbjct: 1   MTYVVTENCIRCKYMDCVSVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL +N+EYA  WPNIT K++    A + DG   K E+ FSP PG  +
Sbjct: 61  LGLEKWLALNAEYAKAWPNITLKRDPPADAKEWDGKPGK-EELFSPEPGQGD 111


>gi|254512440|ref|ZP_05124507.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221536151|gb|EEE39139.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 112

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W++ N +Y+ QWP I TKK+ +P A + DG + K EKYFS  PG   
Sbjct: 61  PGMEEWVEFNRKYSEQWPVIVTKKDPMPDAEERDGEEGKMEKYFSEAPGEGG 112


>gi|163736062|ref|ZP_02143485.1| ferredoxin II [Roseobacter litoralis Och 149]
 gi|161390658|gb|EDQ15004.1| ferredoxin II [Roseobacter litoralis Och 149]
          Length = 112

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCISCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A + DG   K EKYFS NPG   
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPTAEERDGETGKLEKYFSENPGEGG 112


>gi|254475184|ref|ZP_05088570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214029427|gb|EEB70262.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 112

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +Y+  WP I +KK+ LP A + DG + K EKYFS  PG   
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPLPDAEERDGEEGKLEKYFSEAPGEGG 112


>gi|146277598|ref|YP_001167757.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555839|gb|ABP70452.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 112

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MAYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E WL++N +YA  WP I TKK+ LP AA +DG   K   +FS  PG   
Sbjct: 61  PDMESWLELNRKYAEIWPVIVTKKDPLPEAADLDGQTGKLATHFSEKPGEGG 112


>gi|304394151|ref|ZP_07376074.1| ferredoxin [Ahrensia sp. R2A130]
 gi|303293591|gb|EFL87968.1| ferredoxin [Ahrensia sp. R2A130]
          Length = 112

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/112 (72%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYLVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PGL+ WLK+N+E+A +WPNI  K E    A K DG K K+EKYFS  PG  N
Sbjct: 61  PGLDNWLKVNTEFAEKWPNIIAKGEQPGDAEKFDGEKGKFEKYFSAEPGEGN 112


>gi|94497219|ref|ZP_01303791.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sphingomonas sp.
           SKA58]
 gi|94423324|gb|EAT08353.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sphingomonas sp.
           SKA58]
          Length = 112

 Score =  168 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 89/112 (79%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++Y+ +WPNIT K ++   A  M+GV+ K E++FSP PG  +
Sbjct: 61  NGLEKWLELNTKYSAEWPNITVKGDAPADAEAMNGVENKLEQFFSPEPGKGD 112


>gi|99080416|ref|YP_612570.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036696|gb|ABF63308.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 112

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP I +KK+ +P   + DG + K EKYFS  PG   
Sbjct: 61  PDMDQWVEFNRKYAELWPVIVSKKDPMPGHEERDGEEGKLEKYFSEAPGEGG 112


>gi|56696303|ref|YP_166660.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678040|gb|AAV94706.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 112

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/112 (70%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENALVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W++ N +Y+  WP I TKK+ LP A + DG   K EKYFS  PG   
Sbjct: 61  PGMEQWVEFNRKYSEMWPVIVTKKDPLPEAEERDGESGKMEKYFSEAPGEGG 112


>gi|77462982|ref|YP_352486.1| ferredoxin II [Rhodobacter sphaeroides 2.4.1]
 gi|126461856|ref|YP_001042970.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221638838|ref|YP_002525100.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides KD131]
 gi|332557858|ref|ZP_08412180.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides WS8N]
 gi|77387400|gb|ABA78585.1| ferredoxin II [Rhodobacter sphaeroides 2.4.1]
 gi|126103520|gb|ABN76198.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221159619|gb|ACM00599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides KD131]
 gi|332275570|gb|EGJ20885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides WS8N]
          Length = 112

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W+++N +YA  WP I TKK+ LP A  +DG   K   +FS  PG   
Sbjct: 61  PDMESWVELNRKYAEVWPVIVTKKDPLPEATDLDGQPGKLATHFSEKPGEGG 112


>gi|294012720|ref|YP_003546180.1| ferredoxin [Sphingobium japonicum UT26S]
 gi|292676050|dbj|BAI97568.1| ferredoxin [Sphingobium japonicum UT26S]
          Length = 112

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/111 (64%), Positives = 90/111 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDNCIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            GLE WL++N++++ +WPNIT K E+   A  M G++ K+E++FSP PG  
Sbjct: 61  NGLEKWLELNTKFSAEWPNITVKGEAPADADDMKGIENKFEQFFSPEPGAG 111


>gi|110679119|ref|YP_682126.1| ferredoxin II [Roseobacter denitrificans OCh 114]
 gi|109455235|gb|ABG31440.1| ferredoxin II [Roseobacter denitrificans OCh 114]
          Length = 112

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A + DG   K EKYFS NPG   
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPTAEERDGETGKLEKYFSENPGEGG 112


>gi|163738512|ref|ZP_02145927.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|163743577|ref|ZP_02150954.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161383162|gb|EDQ07554.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161388433|gb|EDQ12787.1| ferredoxin-2 [Phaeobacter gallaeciensis BS107]
          Length = 112

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +Y+  WP I +KK+ LP A + DG + K EKYFS  PG   
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPLPEAEERDGEEGKLEKYFSEAPGEGG 112


>gi|217977550|ref|YP_002361697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
 gi|217502926|gb|ACK50335.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
          Length = 112

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV ENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVLENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           PG+E W+ +N++ A  WPNIT K+E+ P A + DG   K++++FSP PG  +
Sbjct: 61  PGIEQWITLNADMAQSWPNITMKREAAPDAKQFDGRPGKFKEFFSPEPGKGD 112


>gi|259417758|ref|ZP_05741677.1| ferredoxin-1 [Silicibacter sp. TrichCH4B]
 gi|259346664|gb|EEW58478.1| ferredoxin-1 [Silicibacter sp. TrichCH4B]
          Length = 112

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP I +KK+ +P   + DG + K EKYFS  PG   
Sbjct: 61  PDMDQWVEFNRKYAELWPVIVSKKDPMPGYEERDGEEGKLEKYFSEAPGEGG 112


>gi|85709784|ref|ZP_01040849.1| ferredoxin II [Erythrobacter sp. NAP1]
 gi|85688494|gb|EAQ28498.1| ferredoxin II [Erythrobacter sp. NAP1]
          Length = 112

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 90/112 (80%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTEDCIKCKYTDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++++ +WPNIT++K+    A +  G + K+EKYFS  PG  +
Sbjct: 61  DGLEKWLELNTKFSAEWPNITSQKDPPADADEHKGEENKFEKYFSAEPGEGD 112


>gi|114764921|ref|ZP_01444094.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542633|gb|EAU45657.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 112

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I +KK+ +P A + DG   K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIISKKDPMPEAEERDGEPGKMEKYFSEAPGEGG 112


>gi|84500894|ref|ZP_00999129.1| iron-sulfur cluster-binding protein [Oceanicola batsensis HTCC2597]
 gi|84390961|gb|EAQ03379.1| iron-sulfur cluster-binding protein [Oceanicola batsensis HTCC2597]
          Length = 112

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 85/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P  E W++ N +Y+  WP I T+K+ LP A + DG   K EKYFS  PG   
Sbjct: 61  PDTEKWVEFNRKYSEMWPVIITRKDPLPEAEERDGETGKLEKYFSEKPGEGG 112


>gi|87198149|ref|YP_495406.1| 4Fe-4S ferredoxin, iron-sulfur binding [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87133830|gb|ABD24572.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 112

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++Y+ +WPNIT KK++   A +  G + K++KYFS  PG  +
Sbjct: 61  SGLEQWLELNAKYSAEWPNITAKKDAPADADEHKGEEGKFDKYFSAEPGEGD 112


>gi|103488218|ref|YP_617779.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sphingopyxis alaskensis
           RB2256]
 gi|98978295|gb|ABF54446.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sphingopyxis alaskensis
           RB2256]
          Length = 112

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 91/112 (81%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACVRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++NS+++ +WPNIT KKE+   A +  GV+ K+EK+FSP PG  +
Sbjct: 61  SGLEKWLEVNSKFSAEWPNITVKKETPADADEYKGVEGKFEKFFSPEPGEGD 112


>gi|86137858|ref|ZP_01056434.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85825450|gb|EAQ45649.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 112

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTDNCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +Y+  WP I +KK+ +P A + DG + K EKYFS  PG   
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPMPEAEERDGEEGKLEKYFSEAPGEGG 112


>gi|85375452|ref|YP_459514.1| ferredoxin II [Erythrobacter litoralis HTCC2594]
 gi|84788535|gb|ABC64717.1| ferredoxin II [Erythrobacter litoralis HTCC2594]
          Length = 112

 Score =  166 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEG+N L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGDNMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL+IN++++  WPNIT KKE    A +  G + KYEKYFS  PG  +
Sbjct: 61  DGLEKWLEINTKFSADWPNITQKKEPPADADEHKGEEDKYEKYFSAEPGEGD 112


>gi|254459551|ref|ZP_05072967.1| ferredoxin II [Rhodobacterales bacterium HTCC2083]
 gi|206676140|gb|EDZ40627.1| ferredoxin II [Rhodobacteraceae bacterium HTCC2083]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQLPDAEERDGEEGKLEKYFSEKPGEGG 112


>gi|83955683|ref|ZP_00964263.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83839977|gb|EAP79153.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A K DG + K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEKRDGEEGKLEKYFSEAPGEGG 112


>gi|254466025|ref|ZP_05079436.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodobacterales bacterium
           Y4I]
 gi|206686933|gb|EDZ47415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodobacterales bacterium
           Y4I]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP I +KK+ LP   + DG + K EKYFS  PG   
Sbjct: 61  PDMDKWVEFNRKYAELWPVIVSKKDPLPGYEERDGEEGKMEKYFSEAPGEGG 112


>gi|260753231|ref|YP_003226124.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|258552594|gb|ACV75540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W+++N +YA +WPNIT K +    A +M  V  K EK+FSP PG  +
Sbjct: 61  NGLESWMELNRKYAEEWPNITHKTDVPGDADEMREVTGKLEKFFSPKPGNGD 112


>gi|254486267|ref|ZP_05099472.1| ferredoxin II [Roseobacter sp. GAI101]
 gi|214043136|gb|EEB83774.1| ferredoxin II [Roseobacter sp. GAI101]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEERDGEEGKLEKYFSEAPGEGG 112


>gi|326386141|ref|ZP_08207765.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209366|gb|EGD60159.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE CI CK  DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTEACIKCKFMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE WL++N++Y+ +WPN+T KK++   A +  G + K++KYFS  PG  +
Sbjct: 61  SGLEQWLELNAKYSAEWPNLTAKKDAPADADEHKGEEGKFDKYFSAEPGEGD 112


>gi|83308697|emb|CAJ01607.1| ferredoxin ii [Methylocapsa acidiphila]
          Length = 112

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV ENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1   MTYVVVENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL+ WL++N + A  WPN+T K+E++P A   DG   K++++FS  PG  +
Sbjct: 61  RGLDKWLELNRDMAKAWPNVTVKREAMPDAKAFDGRPGKFDEFFSAEPGSGD 112


>gi|296284816|ref|ZP_06862814.1| ferredoxin II [Citromicrobium bathyomarinum JL354]
          Length = 112

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WL++N++++ +WPNIT KK+    A +  G + K+EK+F+P PG  +
Sbjct: 61  DNLEKWLELNTKFSNEWPNITQKKDPPEDADEHKGEEGKFEKFFNPEPGEGD 112


>gi|56551116|ref|YP_161955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761474|ref|ZP_04759562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|56542690|gb|AAV88844.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241374381|gb|EER63878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 112

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+ DCVEVCPVDCFYEGEN L I+P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W+++N +YA +WPNIT K +    A +M  V  K EK+FSP PG  +
Sbjct: 61  NGLESWMELNRKYAEEWPNITHKTDVPADADEMREVTGKLEKFFSPKPGNGD 112


>gi|126738719|ref|ZP_01754415.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719900|gb|EBA16607.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 112

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +Y+  WP I +KK+ +P   + DG + K EKYFS  PG   
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIVSKKDPMPGYEEKDGEEGKLEKYFSEAPGEGG 112


>gi|126729324|ref|ZP_01745138.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126710314|gb|EBA09366.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 112

 Score =  166 bits (420), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVIDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+ +WP I TKK+ LP A + DG   K  KYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEEWPVIITKKDPLPEAEERDGETDKVTKYFSEKPGEGG 112


>gi|83941124|ref|ZP_00953586.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83846944|gb|EAP84819.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 112

 Score =  165 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPEAEERDGEEGKLEKYFSEAPGEGG 112


>gi|312112940|ref|YP_004010536.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218069|gb|ADP69437.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 114

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/113 (69%), Positives = 88/113 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK TDCVEVCPVDCFYEG N L I PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYVVLDACIKCKFTDCVEVCPVDCFYEGANMLVISPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           PGLE +L++N EYA  WPNIT KK  LP   K     +K+EKYFSP+PG  ++
Sbjct: 61  PGLEKFLEVNREYAALWPNITVKKPPLPDYEKFQQEAEKFEKYFSPDPGEGDS 113


>gi|260426157|ref|ZP_05780136.1| ferredoxin [Citreicella sp. SE45]
 gi|260420649|gb|EEX13900.1| ferredoxin [Citreicella sp. SE45]
          Length = 112

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 85/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP I +KKE +P     DG   K +KYFS  PG   
Sbjct: 61  PDMDKWVEFNRKYAEMWPVIISKKEPMPGYEDRDGEPGKLDKYFSEAPGEGG 112


>gi|149202303|ref|ZP_01879276.1| iron-sulfur cluster-binding protein [Roseovarius sp. TM1035]
 gi|149144401|gb|EDM32432.1| iron-sulfur cluster-binding protein [Roseovarius sp. TM1035]
          Length = 112

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 85/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +YA  WP I TKK+ LP A + DG   K EKYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYAEMWPVIITKKDPLPEAEERDGEAGKLEKYFSEAPGLGG 112


>gi|149185281|ref|ZP_01863598.1| ferredoxin II [Erythrobacter sp. SD-21]
 gi|148831392|gb|EDL49826.1| ferredoxin II [Erythrobacter sp. SD-21]
          Length = 112

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/112 (61%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYVVTDACIKCKYTDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
             LE WL++N++++ +WPNIT++KE    A +  G + K++K+FS  PG  +
Sbjct: 61  DNLEKWLELNTKFSAEWPNITSQKEPPADADEHKGEEGKFDKFFSAEPGEGD 112


>gi|288957084|ref|YP_003447425.1| ferredoxin [Azospirillum sp. B510]
 gi|288909392|dbj|BAI70881.1| ferredoxin [Azospirillum sp. B510]
          Length = 110

 Score =  164 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/110 (65%), Positives = 84/110 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+ CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MPYVVTDGCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                WL++N +Y+ QWPNIT KK++   A    GV  K+EK+FSP  GG
Sbjct: 61  DRATKWLELNRDYSGQWPNITRKKDAPADADTFKGVDGKFEKFFSPKAGG 110


>gi|310815307|ref|YP_003963271.1| iron-sulfur cluster-binding protein [Ketogulonicigenium vulgare
           Y25]
 gi|308754042|gb|ADO41971.1| iron-sulfur cluster-binding protein [Ketogulonicigenium vulgare
           Y25]
          Length = 111

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVTENCIACKYTDCVEVCPVDCFYEGENTLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP IT++++ LP   +MDG   K     S NPG   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVITSRRDPLPGYEEMDGKPGKL-ALLSENPGLGG 111


>gi|83952972|ref|ZP_00961699.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83835634|gb|EAP74936.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 112

 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 86/112 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVTDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A + DG + K  KYFS   G   
Sbjct: 61  PDMEEWVEFNRKYSEMWPVIITKKDQLPEAEERDGEEGKLAKYFSEKAGEGG 112


>gi|85707560|ref|ZP_01038630.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85667917|gb|EAQ22808.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 112

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 85/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +YA  WP I TKK+ LP A + DG   K +KYFS  PG   
Sbjct: 61  PDMEKWVEFNRKYAEMWPVIITKKDPLPEAEERDGEAGKLDKYFSEAPGEGG 112


>gi|299134345|ref|ZP_07027538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298591092|gb|EFI51294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 113

 Score =  164 bits (415), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PD++
Sbjct: 1   MTHVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFPDSD 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           P  E  WL+ N +YA+ WPNI  KK     A K +GVK K+E YFS  PG  
Sbjct: 61  PAAEPKWLEQNKKYASLWPNIPFKKTPPEDADKWNGVKDKFEPYFSEKPGEG 112


>gi|126727501|ref|ZP_01743335.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
 gi|126703281|gb|EBA02380.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
          Length = 112

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 88/112 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +Y+  WP I T+K+   +AA+M+GV+ K E +FS  PG   
Sbjct: 61  PDMDKWVEFNRKYSELWPVIITRKDPPANAAEMEGVEGKLESHFSEKPGTGG 112


>gi|84687444|ref|ZP_01015322.1| iron-sulfur cluster-binding protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664602|gb|EAQ11088.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 110

 Score =  163 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/110 (67%), Positives = 85/110 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDKCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P  E W++ N +Y+  WP I  KK+ LP A + DG + K EKYFS  PGG
Sbjct: 61  PEAEKWVEFNRKYSELWPVIIEKKDPLPEAEERDGEEGKLEKYFSEAPGG 110


>gi|209965507|ref|YP_002298422.1| ferredoxin II [Rhodospirillum centenum SW]
 gi|209958973|gb|ACI99609.1| ferredoxin II [Rhodospirillum centenum SW]
          Length = 111

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/109 (66%), Positives = 83/109 (76%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MPYVVTELCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P  E WL++N EY+T WPN+  KK +   A +  G+  KY K+FSP PG
Sbjct: 61  PKAEPWLELNREYSTNWPNLNRKKPAPADADEYKGMPDKYAKFFSPKPG 109


>gi|254441817|ref|ZP_05055310.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
 gi|198251895|gb|EDY76210.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
          Length = 133

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 23  MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 82

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K +  FS  PG   
Sbjct: 83  PDMEKWVEFNLKYSEMWPVIITKKDQLPTAEEMDGKEGKLD-LFSEAPGEGG 133


>gi|260576850|ref|ZP_05844833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020887|gb|EEW24200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 112

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 83/112 (74%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYVVIDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +YA  WP I TKK+ LP A   DG   K   YFS  PG   
Sbjct: 61  PDMDTWVEFNRKYAEMWPVIVTKKDMLPDAEARDGETNKLATYFSEKPGLGG 112


>gi|209886244|ref|YP_002290101.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
 gi|209874440|gb|ACI94236.1| ferredoxin-1 [Oligotropha carboxidovorans OM5]
          Length = 113

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/110 (63%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENC+ CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI PD++
Sbjct: 1   MTHVVTENCVKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFPDSD 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P  E  WL+ N +Y+  WPNI  KK     A K +GV  KY++YFS  PG
Sbjct: 61  PAAEPQWLEQNRKYSAIWPNIPFKKVPPEDADKWNGVPNKYDQYFSEKPG 110


>gi|84515405|ref|ZP_01002767.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84510688|gb|EAQ07143.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 111

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP A +MDG   K +  FS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPGAEEMDGKPGKLD-LFSEAPGEGG 111


>gi|253795562|ref|YP_003038658.1| putative Ferredoxin II [Candidatus Hodgkinia cicadicola Dsem]
 gi|253739870|gb|ACT34205.1| putative Ferredoxin II [Candidatus Hodgkinia cicadicola Dsem]
          Length = 160

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK+TDCVEVCPVDCFYEG+NFL I+PDECIDCGVCEPECP  AIK   E
Sbjct: 50  MAYVVTDNCICCKYTDCVEVCPVDCFYEGKNFLVINPDECIDCGVCEPECPAGAIKSARE 109

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PG+E W ++N+  A  WPNI+ +K  +P A + +GV  K EKYF
Sbjct: 110 PGVEKWAELNARCAKLWPNISRRKPPMPKADEFNGVANKLEKYF 153


>gi|83313418|ref|YP_423682.1| ferredoxin II [Magnetospirillum magneticum AMB-1]
 gi|82948259|dbj|BAE53123.1| Ferredoxin II [Magnetospirillum magneticum AMB-1]
          Length = 123

 Score =  160 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 69/109 (63%), Positives = 77/109 (70%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 15  MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSD 74

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W   N +YA  WPNIT K ++   A    G   K  K  SPNPG
Sbjct: 75  PKATAWTDTNRQYAGSWPNITRKGDAPADADDWKGKPDK-AKLLSPNPG 122


>gi|304321708|ref|YP_003855351.1| hypothetical protein PB2503_10789 [Parvularcula bermudensis
           HTCC2503]
 gi|303300610|gb|ADM10209.1| hypothetical protein PB2503_10789 [Parvularcula bermudensis
           HTCC2503]
          Length = 112

 Score =  160 bits (405), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 87/112 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK+TDCVEVCPVDCFYEGENFLAI PDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYVVTDACIACKYTDCVEVCPVDCFYEGENFLAIKPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                W ++N++YA QWPNIT  K +LP A  M  V+ K E +FS  PG  +
Sbjct: 61  DPDGKWTELNAKYAEQWPNITKAKPALPEADAMADVENKLETHFSEKPGEGD 112


>gi|83591417|ref|YP_425169.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574331|gb|ABC20882.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 112

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 76/112 (67%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD+E
Sbjct: 1   MPYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                WL+IN ++A  WPNIT K  +L  A        K     S NPG   
Sbjct: 61  AIAGKWLEINRKFADLWPNITRKGPALADADDWKDKPDK-TGLLSENPGKGT 111


>gi|163797038|ref|ZP_02190994.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159177785|gb|EDP62336.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 112

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 84/112 (75%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VTE CI CK+TDCVEVCPVDCFYEG N L IHPDECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYIVTEACIKCKYTDCVEVCPVDCFYEGANMLVIHPDECIDCGVCEPECPPEAILPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
              E WL++N EY+  WPNIT K +++P A  M   K K+E++F   PG  N
Sbjct: 61  TEAEKWLEMNREYSEAWPNITRKIDAMPEADAMQAEKGKFERFFDSGPGQGN 112


>gi|163746985|ref|ZP_02154342.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380099|gb|EDQ04511.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 111

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS  PG   
Sbjct: 61  PDMEKWVEFNRKYSELWPVIITKKDPLPAAEEMDGKEGKME-LFSEKPGEGG 111


>gi|182680040|ref|YP_001834186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635923|gb|ACB96697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 112

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 83/112 (74%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M+YVV ENCI CK+ DCVEVCPVDCFYEGE  L I+PDECIDCGVCEPECP +AIKPDT 
Sbjct: 1   MSYVVLENCIKCKYMDCVEVCPVDCFYEGETMLVINPDECIDCGVCEPECPAEAIKPDTV 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GLE W  +N + A  WPN+T K+E+ P A + DG   K++ +F+  PG  +
Sbjct: 61  SGLEKWQALNRKMAQYWPNVTVKREAPPEAKQFDGRPGKFDAFFTETPGQGD 112


>gi|329848407|ref|ZP_08263435.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
 gi|328843470|gb|EGF93039.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
          Length = 112

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 81/111 (72%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDPCVKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                WL+IN++YA  WPNI+ K        + +    KYEKYFS  PG  
Sbjct: 61  DEGTKWLEINTKYAAVWPNISEKGTPPADREEYERETGKYEKYFSEKPGDG 111


>gi|118592843|ref|ZP_01550232.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Stappia aggregata IAM 12614]
 gi|118434613|gb|EAV41265.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Stappia aggregata IAM 12614]
          Length = 108

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 81/103 (78%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEGEN L I+PDECIDCGVCEPECP +AI  DT+
Sbjct: 1   MTFVVTENCIRCKYTDCVEVCPVDCFYEGENMLVINPDECIDCGVCEPECPAEAILADTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P  + W+ +N++YA  WP IT K +++P A   +GV+ K E+ 
Sbjct: 61  PEAQKWIDLNAKYAALWPVITEKIDAMPDAEDWNGVEGKLEQL 103


>gi|144899570|emb|CAM76434.1| 4Fe-4S ferredoxin, iron-sulfur binding [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 141

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/112 (58%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 30  MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIVPDSD 89

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                W ++N +Y+ QWPNIT K ++   A        K +   SPNPG   
Sbjct: 90  DKAAAWAQLNRDYSGQWPNITRKGDAPADADAWKNKPDKAD-LLSPNPGKGT 140


>gi|89069369|ref|ZP_01156728.1| iron-sulfur cluster-binding protein [Oceanicola granulosus
           HTCC2516]
 gi|89045136|gb|EAR51207.1| iron-sulfur cluster-binding protein [Oceanicola granulosus
           HTCC2516]
          Length = 111

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 84/112 (75%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +YA  WP I TKK+ LP A +MDG   K E  FS   G   
Sbjct: 61  PDVEKWVEFNRKYAEIWPVIITKKDPLPKAEEMDGKSGKLE-LFSEAAGEGG 111


>gi|330504210|ref|YP_004381079.1| ferredoxin I [Pseudomonas mendocina NK-01]
 gi|328918496|gb|AEB59327.1| ferredoxin I [Pseudomonas mendocina NK-01]
          Length = 107

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N++ A  WPNIT KK++LP A + DGVK K +  
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALPDAEEWDGVKDKLQHL 105


>gi|226945907|ref|YP_002800980.1| ferredoxin I [Azotobacter vinelandii DJ]
 gi|119918|sp|P00214|FER1_AZOVI RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|142304|gb|AAA22125.1| ferredoxin I [Azotobacter vinelandii]
 gi|226720834|gb|ACO80005.1| Ferredoxin I [Azotobacter vinelandii DJ]
          Length = 107

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|254454463|ref|ZP_05067900.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
 gi|198268869|gb|EDY93139.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
          Length = 111

 Score =  157 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS  PG   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDQLPNAEEMDGKEDKME-LFSEAPGEGG 111


>gi|16124907|ref|NP_419471.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|221233628|ref|YP_002516064.1| ferredoxin [Caulobacter crescentus NA1000]
 gi|10719994|sp|Q45972|FER1_CAUCR RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|497275|gb|AAA85787.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|13421869|gb|AAK22639.1| ferredoxin A [Caulobacter crescentus CB15]
 gi|220962800|gb|ACL94156.1| ferredoxin [Caulobacter crescentus NA1000]
          Length = 113

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 82/112 (73%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDACVRCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              +  WLKIN++YA  WPNIT K E        +    K+EKYFS  PG  
Sbjct: 61  DEADGKWLKINADYAKVWPNITVKGEPPADREDFERETGKFEKYFSEKPGKG 112


>gi|114799500|ref|YP_762091.1| ferredoxin [Hyphomonas neptunium ATCC 15444]
 gi|114739674|gb|ABI77799.1| ferredoxin [Hyphomonas neptunium ATCC 15444]
          Length = 113

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/113 (63%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYIVVDACIRCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                 WLK+NS+YA  WPNIT  KE      +      K EKYF+ NPG  +
Sbjct: 61  DDPDGKWLKLNSDYAKVWPNITRMKEPPADREEFAQETGKLEKYFTANPGAGD 113


>gi|254293139|ref|YP_003059162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hirschia
           baltica ATCC 49814]
 gi|254041670|gb|ACT58465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hirschia
           baltica ATCC 49814]
          Length = 113

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/113 (60%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L I P+ECIDCGVCEPECP +AI PDTE
Sbjct: 1   MTYIVIDACIKCKYTDCVEVCPVDCFYEGENMLVIDPEECIDCGVCEPECPAEAIVPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                 WLK+N+EYA +WPNIT +K+    A +   VK K   +FS  PG  +
Sbjct: 61  DDKDGKWLKLNTEYAAKWPNITVRKDPPEDADEWSQVKDKLGPHFSEKPGTGD 113


>gi|121998437|ref|YP_001003224.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121589842|gb|ABM62422.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 107

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P +E +L++N+E A +WP IT KK+  P A + DG   K +  
Sbjct: 61  LPPSMEHFLELNAELAQKWPLITEKKDPPPDAEEWDGKPDKLQHL 105


>gi|218532108|ref|YP_002422924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218524411|gb|ACK84996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 112

 Score =  157 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 69/104 (66%), Positives = 81/104 (77%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI CK+TDCVEVCPVDCFY G+  L I+PDECIDCGVCEPECP DAIK DTE
Sbjct: 1   MTYVVTDNCIRCKYTDCVEVCPVDCFYVGDTMLVINPDECIDCGVCEPECPADAIKADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PGL+ W+ +N++YA  WPNI+ K++ L  AA  DG   K E  F
Sbjct: 61  PGLDGWIALNAKYAALWPNISEKRDPLHDAAAWDGRPGKLESVF 104


>gi|197104174|ref|YP_002129551.1| ferredoxin A [Phenylobacterium zucineum HLK1]
 gi|196477594|gb|ACG77122.1| ferredoxin A [Phenylobacterium zucineum HLK1]
          Length = 113

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVMDPCIKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WLK+NSEY+  WPNIT K      A + +    K+EKYFS  PG  
Sbjct: 61  DDPDGKWLKVNSEYSRVWPNITVKGTPPADAEQFERESGKFEKYFSEKPGRG 112


>gi|302384120|ref|YP_003819943.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194748|gb|ADL02320.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 133

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 82/112 (73%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DC+EVCPVDCFYEGENFLAI PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 21  MTYIVTDACVKCKFMDCIEVCPVDCFYEGENFLAIAPDECIDCGVCEPECPVDAIKPDTE 80

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WL+IN++YA  WPNIT K        + +    K+EKYFSP PG  
Sbjct: 81  DEPDGKWLQINAQYARVWPNITVKGTPPADREQYERETGKFEKYFSPEPGKG 132


>gi|57908873|gb|AAW59366.1| ferredoxin A [Azotobacter salinestris]
          Length = 107

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KKE+LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKEALPDAEDWDGVKGKLQHL 105


>gi|126733166|ref|ZP_01748913.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126716032|gb|EBA12896.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 111

 Score =  156 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 73/112 (65%), Positives = 85/112 (75%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDNCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A  MDG + K E  FS   G   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPTADDMDGKEGKME-LFSEAAGEGG 111


>gi|114326978|ref|YP_744135.1| ferredoxin [Granulibacter bethesdensis CGDNIH1]
 gi|114315152|gb|ABI61212.1| ferredoxin [Granulibacter bethesdensis CGDNIH1]
          Length = 132

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 72/111 (64%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK  DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 23  MAYVVTENCIRCKFMDCVEVCPVDCFYVGENMLVIHPDECIDCGVCEPECPAEAIFPDSD 82

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                W + N  YA+ WPNIT K E    A +      K E  FS  PG  
Sbjct: 83  DRATAWAEKNRTYASVWPNITRKGEPPADAEEWKDKPGKAE-LFSTEPGEP 132


>gi|142307|gb|AAA16869.1| fdxA [Azotobacter vinelandii]
 gi|20455804|gb|AAM22287.1| ferredoxin A [Azotobacter vinelandii]
          Length = 107

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEP CP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPRCPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|311693936|gb|ADP96809.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [marine
           bacterium HP15]
          Length = 119

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 13  MAFIVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 72

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++++N++ A +WPNIT KK+ LP A + DG   K +
Sbjct: 73  LPADQVQFVELNADLAAKWPNITEKKDPLPDAEEWDGKPNKLQ 115


>gi|255263563|ref|ZP_05342905.1| ferredoxin-1 [Thalassiobium sp. R2A62]
 gi|255105898|gb|EET48572.1| ferredoxin-1 [Thalassiobium sp. R2A62]
          Length = 111

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ++CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDSCIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P +E W++ N +Y+  WP I TKK+ LP+A +MDG + K E  FS   G   
Sbjct: 61  PDMEKWVEFNRKYSEMWPVIITKKDPLPNADEMDGKEGKME-LFSEVAGEGG 111


>gi|49089178|gb|AAT51652.1| PA3621 [synthetic construct]
          Length = 108

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|126726969|ref|ZP_01742807.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
 gi|126703641|gb|EBA02736.1| ferredoxin II [Rhodobacterales bacterium HTCC2150]
          Length = 111

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 81/111 (72%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCV VCPVDCFYEGEN L IHPDECIDCGVCEPECP DAIKPDTE
Sbjct: 1   MTYVVTENCIKCKYTDCVSVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            G E WLK+N+E A QWP I  + +    A +  G + K+ +  S  P  +
Sbjct: 61  SGHETWLKLNAELAEQWPVIDEQIDPPADADQWLGKQNKWTEL-SREPAAR 110


>gi|329849717|ref|ZP_08264563.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
 gi|328841628|gb|EGF91198.1| ferredoxin-2 [Asticcacaulis biprosthecum C19]
          Length = 112

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 76/112 (67%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ CI CK  DCV+VCPVDCFYEGENFL I P  CIDCG+C PECPVDAIKP+ +
Sbjct: 1   MTYVVTDPCIKCKFMDCVDVCPVDCFYEGENFLVIDPAVCIDCGICVPECPVDAIKPEDK 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                WL IN+++   WPNIT K      +A  +    K+EKYFS  PG  +
Sbjct: 61  DTDGKWLAINTQFTAVWPNITRKGTPPADSADFERETGKFEKYFSERPGTGD 112


>gi|107103135|ref|ZP_01367053.1| hypothetical protein PaerPA_01004204 [Pseudomonas aeruginosa PACS2]
 gi|218890154|ref|YP_002439018.1| ferredoxin I [Pseudomonas aeruginosa LESB58]
 gi|254236536|ref|ZP_04929859.1| ferredoxin I [Pseudomonas aeruginosa C3719]
 gi|254242319|ref|ZP_04935641.1| ferredoxin I [Pseudomonas aeruginosa 2192]
 gi|126168467|gb|EAZ53978.1| ferredoxin I [Pseudomonas aeruginosa C3719]
 gi|126195697|gb|EAZ59760.1| ferredoxin I [Pseudomonas aeruginosa 2192]
 gi|218770377|emb|CAW26142.1| ferredoxin I [Pseudomonas aeruginosa LESB58]
          Length = 107

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEIWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|15598817|ref|NP_252311.1| ferredoxin I [Pseudomonas aeruginosa PAO1]
 gi|116051618|ref|YP_789543.1| ferredoxin I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152985024|ref|YP_001346902.1| ferredoxin I [Pseudomonas aeruginosa PA7]
 gi|296387875|ref|ZP_06877350.1| ferredoxin I [Pseudomonas aeruginosa PAb1]
 gi|313108980|ref|ZP_07794955.1| ferredoxin I [Pseudomonas aeruginosa 39016]
 gi|81783634|sp|Q9HY07|FER1_PSEAE RecName: Full=Ferredoxin 1
 gi|9949779|gb|AAG07009.1|AE004782_7 ferredoxin I [Pseudomonas aeruginosa PAO1]
 gi|115586839|gb|ABJ12854.1| ferredoxin I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150960182|gb|ABR82207.1| ferredoxin I [Pseudomonas aeruginosa PA7]
 gi|310881457|gb|EFQ40051.1| ferredoxin I [Pseudomonas aeruginosa 39016]
          Length = 107

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|312795504|ref|YP_004028426.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312167279|emb|CBW74282.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 131

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 25  MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 84

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N+E A  WP+IT  K  LP A +   VK K +  
Sbjct: 85  VPGDQQQFIQLNAELAKDWPSITRTKPPLPDAVEWKDVKDKLKLL 129


>gi|307546338|ref|YP_003898817.1| ferredoxin [Halomonas elongata DSM 2581]
 gi|307218362|emb|CBV43632.1| K05524 ferredoxin [Halomonas elongata DSM 2581]
          Length = 107

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E +++IN+E +  WPNIT KK+    A + DG   K E  
Sbjct: 61  LPEGQEQFIEINAELSETWPNITEKKDPPEDAEEWDGKTGKLEHL 105


>gi|23014750|ref|ZP_00054551.1| COG1146: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 109

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/109 (61%), Positives = 78/109 (71%), Gaps = 1/109 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           P    W   N +Y+++WPNIT K ++   A    G   K  K  SP PG
Sbjct: 61  PAAAAWTDTNRQYSSEWPNITRKGDAPADADDWKGKPDK-AKLLSPKPG 108


>gi|238027280|ref|YP_002911511.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia glumae BGR1]
 gi|237876474|gb|ACR28807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           glumae BGR1]
          Length = 111

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CKHTDCV+VCPVDCF+EGENFLAI PDECIDCGVCEPECPVDAI+ D+ 
Sbjct: 1   MTYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P   ++L +N E A  WP+IT+K+ +LP AA+   V+ K E  
Sbjct: 61  LAPEQRIFLDLNRELAQNWPSITSKRAALPDAARWKDVEGKLEHL 105


>gi|92112753|ref|YP_572681.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91795843|gb|ABE57982.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 107

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N+E +  WPNI+ KK+ LP A + DG   K +  
Sbjct: 61  LPDDQKAFIELNAELSEVWPNISEKKDPLPDAEEWDGKTDKLQHL 105


>gi|295691060|ref|YP_003594753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caulobacter segnis ATCC 21756]
 gi|295432963|gb|ADG12135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
           segnis ATCC 21756]
          Length = 113

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDACVRCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WL++N++YA  WPNIT K        + +    K+EKYFS  PG  
Sbjct: 61  DEPDGKWLRVNADYAKVWPNITVKGVPPEDREQFERETGKFEKYFSEKPGKG 112


>gi|198283633|ref|YP_002219954.1| hypothetical protein Lferr_1523 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666844|ref|YP_002426259.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248154|gb|ACH83747.1| Protein of unknown function DUF1971 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519057|gb|ACK79643.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 206

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CILCK+TDCV VCPVDCF+EG NFLAI PDECIDC +C  ECPVDAI  D +
Sbjct: 1   MTHVVTEACILCKYTDCVTVCPVDCFHEGPNFLAIDPDECIDCTLCVSECPVDAIFRDVD 60

Query: 61  P--GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G+E + ++N+  A +WP I  KK +LP A +   V+ K
Sbjct: 61  LPNGMEEYPELNARLARRWPVIIQKKPALPDAEQWRHVRDK 101


>gi|146281878|ref|YP_001172031.1| ferredoxin I [Pseudomonas stutzeri A1501]
 gi|147744561|sp|P08811|FER_PSEST RecName: Full=Ferredoxin 1
 gi|145570083|gb|ABP79189.1| ferredoxin I [Pseudomonas stutzeri A1501]
 gi|327480121|gb|AEA83431.1| ferredoxin I [Pseudomonas stutzeri DSM 4166]
          Length = 107

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 103


>gi|89055800|ref|YP_511251.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88865349|gb|ABD56226.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 111

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V + CI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP DAI+PDTE
Sbjct: 1   MTYIVNDACIACKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P ++ W++ N +Y+  WP I TKK+ LP+A  MDG   K E  FS   G   
Sbjct: 61  PDMDKWVEFNRKYSEMWPVIITKKDPLPTADDMDGKPGKME-LFSEAAGEGG 111


>gi|83859719|ref|ZP_00953239.1| ferredoxin A [Oceanicaulis alexandrii HTCC2633]
 gi|83852078|gb|EAP89932.1| ferredoxin A [Oceanicaulis alexandrii HTCC2633]
          Length = 111

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/111 (63%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP++AIKPDTE
Sbjct: 1   MTYIVTDACIRCKFTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPIEAIKPDTE 60

Query: 61  PGLE-LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
              +  WL +NS+YAT+WPNIT +K+      + + +  K EKYFS  P  
Sbjct: 61  DDADGKWLALNSKYATEWPNITVRKDPPADYKEFETITNKLEKYFSEKPAS 111


>gi|157831121|pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            YVVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AYVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|94501247|ref|ZP_01307769.1| ferredoxin [Oceanobacter sp. RED65]
 gi|94426674|gb|EAT11660.1| ferredoxin [Oceanobacter sp. RED65]
          Length = 107

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++++N+E A +WPNIT  K+ LP A + DGV+ K E  
Sbjct: 61  LPAGQEKFIELNAELAEEWPNITEMKDKLPDAEEWDGVEGKIEHL 105


>gi|256822660|ref|YP_003146623.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Kangiella koreensis DSM 16069]
 gi|256796199|gb|ACV26855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kangiella
           koreensis DSM 16069]
          Length = 107

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  +  
Sbjct: 1   MAFVVTDNCIQCKYTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPAEAIFEEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E + +WPNIT KK+ LP A + DG   K E  
Sbjct: 61  IPAGMEHFIELNAELSEEWPNITEKKDPLPDAEEWDGKPNKLEHL 105


>gi|37927460|pdb|1PC4|A Chain A, Crystal Structure Of The P50a Mutant Of Ferredoxin I At
           1.65 A Resolution
          Length = 107

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPEC   AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|146308040|ref|YP_001188505.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145576241|gb|ABP85773.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           mendocina ymp]
          Length = 107

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/103 (61%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NC+ CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCVKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++ ++++N++ A  WPNIT KKE+LP A + DGVK K +
Sbjct: 61  VPEDMQEYIELNADLAEVWPNITEKKEALPDAEEWDGVKDKLQ 103


>gi|167589295|ref|ZP_02381683.1| ferredoxin [Burkholderia ubonensis Bu]
          Length = 111

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVVTENCI CKHTDCVEVCPVDCF+EGENFL I PDECIDCGVCEPECPV AI+ D  
Sbjct: 1   MAYVVTENCINCKHTDCVEVCPVDCFHEGENFLVIDPDECIDCGVCEPECPVGAIRQDVA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +     +  +N E A  WP +T +K +LP AA+   V+ K+++ 
Sbjct: 61  LDADQVHYASLNRELAQSWPTLTIRKPALPDAAQWKDVEGKFQQL 105


>gi|37927462|pdb|1PC5|A Chain A, Crystal Structure Of The P50g Mutant Of Ferredoxin I At
           1.8 A Resolution
          Length = 107

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPEC   AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECGAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 105


>gi|157831046|pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
           Facilitates Proton Transfer To The Reduced [3fe-4s]
           Cluster
          Length = 106

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T+CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTNCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|157834956|pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants Of
           Azotobacter Vinelandii Ferredoxin
          Length = 106

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVD FYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|9256973|pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AHVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|148653815|ref|YP_001280908.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Psychrobacter sp. PRwf-1]
 gi|148572899|gb|ABQ94958.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Psychrobacter sp. PRwf-1]
          Length = 107

 Score =  153 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E A +WPNIT  K  LP A K DGV+ K +
Sbjct: 61  VPKGQEEFIELNAELAEEWPNITEMKGQLPDAEKWDGVEGKIQ 103


>gi|157831122|pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  153 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPV+CFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVNCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|329890830|ref|ZP_08269173.1| ferredoxin-2 [Brevundimonas diminuta ATCC 11568]
 gi|328846131|gb|EGF95695.1| ferredoxin-2 [Brevundimonas diminuta ATCC 11568]
          Length = 113

 Score =  153 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I PDECIDCGVCEPECPVDAI PDTE
Sbjct: 1   MTYIVTDACVKCKFMDCVEVCPVDCFYEGENFLVIAPDECIDCGVCEPECPVDAIVPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WL++N+EYA  WPNIT K        + +    K+EKYFSP PG  
Sbjct: 61  DEPDGKWLQVNAEYAKVWPNITVKGVPPADREQYERETGKFEKYFSPKPGKG 112


>gi|157830133|pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
 gi|157831044|pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|157831045|pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|157831059|pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
           Vinelandii At 2.3 Angstroms Resolution
 gi|157837034|pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 gi|225734355|pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
           Temperature, 1.35 A
          Length = 106

 Score =  153 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|50250469|emb|CAH03855.1| Ferredoxin I [Pseudomonas stutzeri]
          Length = 106

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  VPEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 103


>gi|229365481|dbj|BAH57989.1| hypothetical protein [Acetobacter lovaniensis]
          Length = 112

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 69/108 (63%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 3   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 62

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNIT K      A +      K E   SPNP
Sbjct: 63  DRAAAWAEINAKYATQWPNITRKGTPPADAEEWKDKPNKTE-LLSPNP 109


>gi|315498121|ref|YP_004086925.1| ferredoxin a [Asticcacaulis excentricus CB 48]
 gi|315416133|gb|ADU12774.1| ferredoxin A [Asticcacaulis excentricus CB 48]
          Length = 113

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/112 (62%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I+PDECIDCGVCEPECPVDAIKPDTE
Sbjct: 1   MTYIVTDPCVKCKFMDCVEVCPVDCFYEGENFLVINPDECIDCGVCEPECPVDAIKPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WL++NS+YA  WPNI+ K          +    K+EKYFS  PG  
Sbjct: 61  DEPDGKWLEVNSKYARVWPNISVKGTPPADREDFERETGKFEKYFSEKPGDG 112


>gi|296537277|ref|ZP_06899163.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296262395|gb|EFH09134.1| ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 110

 Score =  153 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/111 (59%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTENCIRCKYMDCVEVCPVDCFYVGENMLVIHPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                W ++N  Y+ QWPNIT K E+   A   +G   K +  F P PG  
Sbjct: 61  DKAADWAELNRTYSQQWPNITRKGEAPEDAEAWNGKPDK-KALFDPKPGEP 110


>gi|157831123|pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDC YEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCIYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|110834671|ref|YP_693530.1| ferredoxin, 4Fe-4S [Alcanivorax borkumensis SK2]
 gi|110647782|emb|CAL17258.1| ferredoxin, 4Fe-4S [Alcanivorax borkumensis SK2]
          Length = 107

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 66/106 (62%), Positives = 79/106 (74%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEGENFL IHPDECIDC +CEPECPV+AI  + E
Sbjct: 1   MTFVVGENCINCKHTDCVEVCPVDCFYEGENFLVIHPDECIDCALCEPECPVNAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + +L+IN++ A +WPNIT  K++   A + DGV  K EK  
Sbjct: 61  LPDDQQDFLEINADLAEKWPNITEMKDAPDDAEEWDGVPNKREKLI 106


>gi|46371302|gb|AAS90417.1| ferredoxin A [Azotobacter chroococcum]
          Length = 107

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N++ A  WPNIT KKE+L  A   DGVK K +  
Sbjct: 61  VPEDMQEFIQMNADLAEVWPNITEKKEALSDAEDWDGVKGKLQHL 105


>gi|157831126|pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +C PECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCAPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|157831125|pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPD CIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDSCIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|312959253|ref|ZP_07773771.1| ferredoxin [Pseudomonas fluorescens WH6]
 gi|311286513|gb|EFQ65076.1| ferredoxin [Pseudomonas fluorescens WH6]
          Length = 107

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N E A  WPNIT +K+ +P AA+ DG   K E+ 
Sbjct: 61  VPAGMEQFIQLNVELAEVWPNITERKDPMPDAAEWDGKPNKIEQL 105


>gi|258541199|ref|YP_003186632.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01]
 gi|256632277|dbj|BAH98252.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01]
 gi|256635334|dbj|BAI01303.1| ferredoxin [Acetobacter pasteurianus IFO 3283-03]
 gi|256638389|dbj|BAI04351.1| ferredoxin [Acetobacter pasteurianus IFO 3283-07]
 gi|256641443|dbj|BAI07398.1| ferredoxin [Acetobacter pasteurianus IFO 3283-22]
 gi|256644498|dbj|BAI10446.1| ferredoxin [Acetobacter pasteurianus IFO 3283-26]
 gi|256647553|dbj|BAI13494.1| ferredoxin [Acetobacter pasteurianus IFO 3283-32]
 gi|256650606|dbj|BAI16540.1| ferredoxin [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653597|dbj|BAI19524.1| ferredoxin [Acetobacter pasteurianus IFO 3283-12]
          Length = 110

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/108 (63%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNIT K      A +      K E   SPNP
Sbjct: 61  DRAAAWAEINAKYATQWPNITRKGTPPADAEEWKDKPNKTE-LLSPNP 107


>gi|11513606|pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
          Length = 106

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CE ECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCESECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|294084640|ref|YP_003551398.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664213|gb|ADE39314.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 112

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 82/112 (73%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V ENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AI PD+E
Sbjct: 1   MTYIVNENCINCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPPEAILPDSE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P    WL +N + +  WPNI  K + +P+A   +    K++KYF+  PG  N
Sbjct: 61  PEATKWLDLNRDMSEIWPNIGQKIDEMPNAKAAESETGKFDKYFTKAPGKGN 112


>gi|167648072|ref|YP_001685735.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Caulobacter sp. K31]
 gi|167350502|gb|ABZ73237.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caulobacter
           sp. K31]
          Length = 113

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/112 (66%), Positives = 81/112 (72%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ CI CK  DCVEVCPVDCFYEGENFLAI+PDECIDCGVCEPECP+DAIKPDTE
Sbjct: 1   MTYIVTDACIKCKFMDCVEVCPVDCFYEGENFLAINPDECIDCGVCEPECPIDAIKPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WL+INSEYA  WPNIT K          +    K+EKYFS  PG  
Sbjct: 61  DEPDGKWLRINSEYAKIWPNITVKGVPPADREAFERETGKFEKYFSEKPGKG 112


>gi|12084520|pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084521|pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084522|pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 gi|12084523|pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
          Length = 106

 Score =  152 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC  CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCASCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|330807813|ref|YP_004352275.1| ferredoxin I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327375921|gb|AEA67271.1| ferredoxin I [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 107

 Score =  152 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  VPAGMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 105


>gi|157884757|pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
           Dithionite Reduced At Ph 8.5, Resolution 1.4 A
 gi|157884763|pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
           K, 1.35 A
 gi|157884764|pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
           Reduced, Ph 8.5, 1.4a Resolution, 100 K
          Length = 106

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|254419877|ref|ZP_05033601.1| 4Fe-4S binding domain protein [Brevundimonas sp. BAL3]
 gi|196186054|gb|EDX81030.1| 4Fe-4S binding domain protein [Brevundimonas sp. BAL3]
          Length = 113

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/112 (64%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK  DCVEVCPVDCFYEGENFL I PDECIDCGVCEPECPVDAI PDTE
Sbjct: 1   MTYIVTDACVKCKFMDCVEVCPVDCFYEGENFLVIAPDECIDCGVCEPECPVDAIVPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 WL++N+EYA  WPNIT K        + +    KYEKYFSP PG  
Sbjct: 61  DEPDGKWLQVNAEYAKVWPNITVKGTPPADREQYERETGKYEKYFSPKPGKG 112


>gi|296112737|ref|YP_003626675.1| ferredoxin 1 [Moraxella catarrhalis RH4]
 gi|295920431|gb|ADG60782.1| ferredoxin 1 [Moraxella catarrhalis RH4]
 gi|326560986|gb|EGE11351.1| ferredoxin 1 [Moraxella catarrhalis 7169]
 gi|326563774|gb|EGE14025.1| ferredoxin 1 [Moraxella catarrhalis 46P47B1]
 gi|326563977|gb|EGE14227.1| ferredoxin 1 [Moraxella catarrhalis 12P80B1]
 gi|326566788|gb|EGE16927.1| ferredoxin 1 [Moraxella catarrhalis 103P14B1]
 gi|326567369|gb|EGE17484.1| ferredoxin 1 [Moraxella catarrhalis BC1]
 gi|326569888|gb|EGE19938.1| ferredoxin 1 [Moraxella catarrhalis BC8]
 gi|326571504|gb|EGE21519.1| ferredoxin 1 [Moraxella catarrhalis BC7]
 gi|326575213|gb|EGE25141.1| ferredoxin 1 [Moraxella catarrhalis CO72]
 gi|326576701|gb|EGE26608.1| ferredoxin 1 [Moraxella catarrhalis 101P30B1]
 gi|326577625|gb|EGE27502.1| ferredoxin 1 [Moraxella catarrhalis O35E]
          Length = 107

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  P--GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +LKIN E +  WPNIT KK++LP   K DGV+ K +
Sbjct: 61  VPSGQEEFLKINEELSAVWPNITEKKDALPDYEKWDGVEGKLQ 103


>gi|90020902|ref|YP_526729.1| RecA DNA recombination protein [Saccharophagus degradans 2-40]
 gi|89950502|gb|ABD80517.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 107

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV +NCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGDNCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +L++N+E A  WPNIT KK++   A + DGV+ K +
Sbjct: 61  LPDDQQAFLELNAELAEVWPNITEKKDAPADAEEWDGVEGKLQ 103


>gi|254786793|ref|YP_003074222.1| ferredoxin-1 [Teredinibacter turnerae T7901]
 gi|237685053|gb|ACR12317.1| ferredoxin-1 [Teredinibacter turnerae T7901]
          Length = 107

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  P--GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E +L++N+E A  WPNIT KKE+   A + DGV+ K +
Sbjct: 61  LPSDQEAFLELNAELAEVWPNITEKKEAPADAEEWDGVEGKLQ 103


>gi|331006208|ref|ZP_08329530.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC1989]
 gi|330419965|gb|EGG94309.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC1989]
          Length = 107

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP DAI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPADAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E++L++N+E A  WPNIT  KE+   A + DGV+ K +  
Sbjct: 61  LPEGQEVFLELNAELAETWPNITEMKEAPADAEEWDGVEGKLQHL 105


>gi|28871202|ref|NP_793821.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969150|ref|ZP_03397289.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|301383955|ref|ZP_07232373.1| ferredoxin [Pseudomonas syringae pv. tomato Max13]
 gi|302064159|ref|ZP_07255700.1| ferredoxin [Pseudomonas syringae pv. tomato K40]
 gi|302134755|ref|ZP_07260745.1| ferredoxin [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28854452|gb|AAO57516.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926148|gb|EEB59704.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|330872695|gb|EGH06844.1| ferredoxin [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331016400|gb|EGH96456.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 107

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+ +P AA  DG K K E  
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDGMPDAADWDGKKGKIEHL 105


>gi|255021900|ref|ZP_05293910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968724|gb|EET26276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus caldus ATCC 51756]
          Length = 206

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVTE+CI CK+TDCV VCPVDCF+EG NFL I P ECIDC +C  ECPVDAI  D  
Sbjct: 1   MTHVVTESCIQCKYTDCVTVCPVDCFHEGPNFLVIDPCECIDCTLCVAECPVDAIFRDVD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +L++N++ A  WP I  KK +LP A +   V  K E
Sbjct: 61  MPDGSEGYLELNAQLAQIWPVIIQKKAALPEAERWRHVMPKRE 103


>gi|157831124|pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|26988357|ref|NP_743782.1| ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148549359|ref|YP_001269461.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida F1]
 gi|60392274|sp|P0A122|FER1_PSEPK RecName: Full=Ferredoxin 1
 gi|60392275|sp|P0A123|FER1_PSEPU RecName: Full=Ferredoxin 1
 gi|24983108|gb|AAN67246.1|AE016351_8 ferrodoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|7243294|dbj|BAA92688.1| ferrodoxin [Pseudomonas putida]
 gi|14646832|dbj|BAB62000.1| [3Fe-4S][4Fe-4S]ferredoxin [Pseudomonas putida]
 gi|148513417|gb|ABQ80277.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           putida F1]
 gi|313500208|gb|ADR61574.1| FdxA [Pseudomonas putida BIRD-1]
          Length = 107

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  P--GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPSGMENFIELNAELAEIWPNITERKDALPDAEEWDGKPGKIADL 105


>gi|237800177|ref|ZP_04588638.1| ferredoxin [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023034|gb|EGI03091.1| ferredoxin [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 107

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+ +P AA+ DG   K E  
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDGMPDAAEWDGKPGKIEHL 105


>gi|53803364|ref|YP_114883.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
 gi|53757125|gb|AAU91416.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
          Length = 107

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCV+VCPVDCF+EG NFL I PDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAHAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++++N+E +  WP+I+  KE+LP A + +G   K +
Sbjct: 61  LPEGQEQFIQLNAELSKIWPSISEVKEALPDADEWNGKPDKLQ 103


>gi|5305131|emb|CAB46192.1| ferrodoxin [Pseudomonas putida]
          Length = 107

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  P--GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPSGMENFIELNAELAEIWPNITERKDALPDAEEWDGKTGKIADL 105


>gi|170723212|ref|YP_001750900.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida W619]
 gi|169761215|gb|ACA74531.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
           putida W619]
          Length = 107

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E +L++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPAGMENFLELNAELAEIWPNITERKDALPDAEEWDGKPGKIADL 105


>gi|11514021|pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
          Length = 106

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVE CPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEECPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|254245946|ref|ZP_04939267.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
           PC184]
 gi|124870722|gb|EAY62438.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
           PC184]
          Length = 134

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 28  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 87

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 88  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQDKLHLL 132


>gi|9622249|gb|AAF89693.1|AF170100_1 ferredoxin A [Pseudomonas aeruginosa]
          Length = 107

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI  +   CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIQVQIHHCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++NSE A  WPNIT KK++LP A + DGV  K +  
Sbjct: 61  VPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHL 105


>gi|104783163|ref|YP_609661.1| ferredoxin [Pseudomonas entomophila L48]
 gi|95112150|emb|CAK16877.1| ferredoxin [Pseudomonas entomophila L48]
          Length = 107

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  VPAGMENFIELNAELAEIWPNITEKKDALPDAEEWDGKPGKIADL 105


>gi|158424426|ref|YP_001525718.1| ferredoxin [Azorhizobium caulinodans ORS 571]
 gi|158331315|dbj|BAF88800.1| ferredoxin [Azorhizobium caulinodans ORS 571]
          Length = 109

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/110 (59%), Positives = 71/110 (64%), Gaps = 1/110 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+ CI CK+ DCV VCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PDT+
Sbjct: 1   MAYVVTDGCIRCKYMDCVSVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
           P    WL +N+EYA  WPNIT K E    A    G   K      P P  
Sbjct: 61  PRAGEWLALNAEYAATWPNITEKGEPPADADDWKGKAGKL-ALLDPAPAA 109


>gi|330967908|gb|EGH68168.1| ferredoxin [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 107

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+S+P AA+ DG K K E  
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDSMPDAAEWDGKKGKIEDL 105


>gi|157872416|pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
           Azotobacter Vinelandii At 1.7 Angstrom Resolution
          Length = 106

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T+CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTECVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|70728590|ref|YP_258339.1| ferredoxin [Pseudomonas fluorescens Pf-5]
 gi|68342889|gb|AAY90495.1| ferredoxin [Pseudomonas fluorescens Pf-5]
          Length = 107

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 105


>gi|167032191|ref|YP_001667422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas putida GB-1]
 gi|166858679|gb|ABY97086.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
           putida GB-1]
          Length = 107

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  IPAGMENFIELNAELAEVWPNITERKDALPDAEEWDGKTGKIADL 105


>gi|329114808|ref|ZP_08243565.1| Ferredoxin-2 [Acetobacter pomorum DM001]
 gi|326695939|gb|EGE47623.1| Ferredoxin-2 [Acetobacter pomorum DM001]
          Length = 112

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/108 (62%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 3   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 62

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YATQWPNIT K      A +      K E   SP+P
Sbjct: 63  DRAAAWAEINAKYATQWPNITRKGTPPADAEEWKDKPNKTE-LLSPDP 109


>gi|157831128|pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
          Length = 106

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVSPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|2098504|pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
 gi|2098505|pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKXTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|114320642|ref|YP_742325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227036|gb|ABI56835.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 107

 Score =  151 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  +  
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E +L +N+E A +WP IT +K+    A + DG   K E  
Sbjct: 61  LPAGQEEFLALNAELAQEWPVITEQKDPPEDADEWDGKPNKLELL 105


>gi|329896375|ref|ZP_08271474.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC3088]
 gi|328921795|gb|EGG29166.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
           IMCC3088]
          Length = 107

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCINCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++L++N+E A  WPNIT  K++LP A +  G   K 
Sbjct: 61  LPEDQQVFLELNAELAEIWPNITEMKDALPDAEEWAGKSNKL 102


>gi|46371298|gb|AAS90414.1| ferredoxin A [Azomonas macrocytogenes]
          Length = 107

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIKCKYTDCVEVRPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N++ A  WPNIT KKE+L  A   DGVK K +  
Sbjct: 61  VPEDMQEFIQLNADLAEVWPNITEKKEALSDAEDWDGVKGKLQHL 105


>gi|33150233|gb|AAP97087.1| ferredoxin [Pseudomonas chlororaphis]
          Length = 107

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT KK+SLP A + DGVK K +  
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKDSLPDAEEWDGVKGKIKDL 105


>gi|361779|prf||1410240A ferredoxin
          Length = 106

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/102 (59%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           T+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   TFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               + ++++N++ A  WPNIT KK++L  A + DGVK K +
Sbjct: 61  PEDQQEFIELNADLAEVWPNITEKKDALADAEEWDGVKDKLQ 102


>gi|77457360|ref|YP_346865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
           Pf0-1]
 gi|77381363|gb|ABA72876.1| ferredoxin I [Pseudomonas fluorescens Pf0-1]
          Length = 107

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/105 (62%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT KKESLP A + DGVK K +  
Sbjct: 61  VPEEMQEFIQLNVELAEIWPNITEKKESLPDAEEWDGVKGKIKDL 105


>gi|221201316|ref|ZP_03574355.1| putative ferredoxin [Burkholderia multivorans CGD2M]
 gi|221208796|ref|ZP_03581794.1| putative ferredoxin [Burkholderia multivorans CGD2]
 gi|221214124|ref|ZP_03587097.1| putative ferredoxin [Burkholderia multivorans CGD1]
 gi|221166301|gb|EED98774.1| putative ferredoxin [Burkholderia multivorans CGD1]
 gi|221171252|gb|EEE03701.1| putative ferredoxin [Burkholderia multivorans CGD2]
 gi|221178584|gb|EEE10992.1| putative ferredoxin [Burkholderia multivorans CGD2M]
          Length = 136

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 30  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 89

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 90  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKLHLL 134


>gi|304310610|ref|YP_003810208.1| FDX ferredoxin [gamma proteobacterium HdN1]
 gi|301796343|emb|CBL44551.1| FDX ferredoxin [gamma proteobacterium HdN1]
          Length = 107

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  VPDDQQQFIPLNAELAEKWPNITEKKDPLPEAKEWDGKPDKMK 103


>gi|9256974|pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDC YEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCHYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|157829710|pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+ DCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYCDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|149374516|ref|ZP_01892290.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
 gi|149361219|gb|EDM49669.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
          Length = 107

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++++N++ A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  LPADQVQFVELNADLAGKWPNITEKKDPLPEAEEWDGKPDKLQ 103


>gi|157831043|pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
           Ferredoxin I. (Fe-S) Cluster-Driven Protein
           Rearrangement
          Length = 106

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEV PVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVAPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|332969296|gb|EGK08322.1| ferredoxin [Psychrobacter sp. 1501(2011)]
          Length = 107

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E A +WPNIT   + LP A K DGV+ K +
Sbjct: 61  VPKGQEEFIALNAELAEEWPNITEMHDQLPDAEKWDGVEGKIQ 103


>gi|325277034|ref|ZP_08142695.1| ferredoxin [Pseudomonas sp. TJI-51]
 gi|324097831|gb|EGB96016.1| ferredoxin [Pseudomonas sp. TJI-51]
          Length = 107

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT +K++LP A + DG   K    
Sbjct: 61  VPAGMENFIELNAELAEIWPNITERKDALPDAEEWDGKIGKIADL 105


>gi|257454098|ref|ZP_05619372.1| ferredoxin-1 [Enhydrobacter aerosaccus SK60]
 gi|257448576|gb|EEV23545.1| ferredoxin-1 [Enhydrobacter aerosaccus SK60]
          Length = 107

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NC+ CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCVRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E A +WPNI+   + LP A + DGV  K +
Sbjct: 61  VPKGQEIYIELNAELAEKWPNISAMHDPLPDAKEWDGVPNKLQ 103


>gi|148262070|ref|YP_001236197.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|326405582|ref|YP_004285664.1| ferredoxin [Acidiphilium multivorum AIU301]
 gi|146403751|gb|ABQ32278.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
 gi|325052444|dbj|BAJ82782.1| ferredoxin [Acidiphilium multivorum AIU301]
          Length = 110

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIKCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W++ N E+AT WPN+T K      A +      K E  FSP P
Sbjct: 61  GKASAWIEKNREFATLWPNMTRKGTPPADADEWKDRDGKAE-LFSPEP 107


>gi|120555004|ref|YP_959355.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324853|gb|ABM19168.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Marinobacter
           aquaeolei VT8]
          Length = 107

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFIVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +++IN+E A +WPNIT KK+ LP A + DG   K +
Sbjct: 61  LPAGQEAFVEINAELAGKWPNITEKKDPLPDAEEWDGKPDKLK 103


>gi|153872043|ref|ZP_02001049.1| 4Fe-4S ferredoxin, iron-sulfur binding [Beggiatoa sp. PS]
 gi|152071489|gb|EDN68949.1| 4Fe-4S ferredoxin, iron-sulfur binding [Beggiatoa sp. PS]
          Length = 109

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCILCK+TDC+EVCPVDCF+EG NFL I P+ECIDC +CEPECP  AI  +  
Sbjct: 1   MAFVVTENCILCKYTDCIEVCPVDCFHEGPNFLVIDPEECIDCTLCEPECPAKAIYSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + +++IN++ + +WP IT +K+  P A + DG   K +
Sbjct: 61  LPSEQQHFVQINADLSQKWPVITERKDPPPDAEQWDGKPDKLQ 103


>gi|6729695|pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
          Length = 106

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+T CVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTKCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT  K+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEDKDPLPDAEDWDGVKGKLQHL 104


>gi|58257339|gb|AAK30050.2| ferredoxin [Pseudomonas fluorescens]
          Length = 107

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV++CPVDCFY+G NFL IHPDECIDC +CEP CP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVKICPVDCFYKGPNFLVIHPDECIDCALCEPRCPAQAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  VPPDMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 105


>gi|332304879|ref|YP_004432730.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172208|gb|AEE21462.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 130

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +CEPECP  AI  D  
Sbjct: 24  MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCALCEPECPAKAIYQDDK 83

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E + ++N+E +  WPNI         A + DGV  K E
Sbjct: 84  LPAGQEAFNELNAELSKIWPNIIEVIPPPADAKEWDGVPNKLE 126


>gi|319786641|ref|YP_004146116.1| hypothetical protein Psesu_1035 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465153|gb|ADV26885.1| hypothetical protein Psesu_1035 [Pseudoxanthomonas suwonensis 11-1]
          Length = 107

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E ++ +N+E +  WP IT +KE LP AA+ DG   K +
Sbjct: 61  VPAGQEGFVALNAELSRAWPVITVRKEPLPDAAEWDGKGDKLK 103


>gi|270157017|ref|ZP_06185674.1| ferredoxin-1 [Legionella longbeachae D-4968]
 gi|289164568|ref|YP_003454706.1| ferredoxin [Legionella longbeachae NSW150]
 gi|269989042|gb|EEZ95296.1| ferredoxin-1 [Legionella longbeachae D-4968]
 gi|288857741|emb|CBJ11585.1| putative ferredoxin [Legionella longbeachae NSW150]
          Length = 109

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHP+ECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIKCKYTDCVEVCPVDCFYEGPNFLVIHPEECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P  + + ++N++ +  WPNIT+KK++   A   + VK K +  
Sbjct: 61  LTPEQQQFKELNAKLSKNWPNITSKKDAPADAKDWEEVKDKLQHL 105


>gi|52842141|ref|YP_095940.1| ferredoxin II (4Fe-4S) [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|54294810|ref|YP_127225.1| hypothetical protein lpl1887 [Legionella pneumophila str. Lens]
 gi|52629252|gb|AAU27993.1| ferredoxin II (4Fe-4S) [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53754642|emb|CAH16126.1| hypothetical protein lpl1887 [Legionella pneumophila str. Lens]
          Length = 111

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E +  WPNIT KK++   A   + VK K +
Sbjct: 61  LTEEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQ 103


>gi|6980482|pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980483|pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980484|pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
 gi|6980485|pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDEC DC +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECNDCALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|87122438|ref|ZP_01078318.1| ferredoxin I [Marinomonas sp. MED121]
 gi|86162231|gb|EAQ63516.1| ferredoxin I [Marinomonas sp. MED121]
          Length = 107

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFVVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPASAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E ++++N++ A  WPNIT KK++L  AA  DGV+ K E  
Sbjct: 61  LPEDQEHFVELNADLANVWPNITEKKDALADAATWDGVEDKLEHL 105


>gi|86157959|ref|YP_464744.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|197122738|ref|YP_002134689.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|220917521|ref|YP_002492825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|85774470|gb|ABC81307.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|196172587|gb|ACG73560.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|219955375|gb|ACL65759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 107

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDCG CEP CP  AI P+  
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCGACEPACPTKAIFPEES 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++NSE +  WPNIT KK+ LP A +   V++K +K 
Sbjct: 61  LPAKWNEYVQLNSELSKAWPNITEKKDPLPEAEEWKDVEEKRDKL 105


>gi|296107515|ref|YP_003619216.1| ferredoxin II (4Fe-4S) [Legionella pneumophila 2300/99 Alcoy]
 gi|295649417|gb|ADG25264.1| ferredoxin II (4Fe-4S) [Legionella pneumophila 2300/99 Alcoy]
          Length = 111

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E +  WPNIT KK++   A   + VK K +
Sbjct: 61  LTDEQQQFKELNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQ 103


>gi|71083130|ref|YP_265849.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762443|ref|ZP_01264408.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1002]
 gi|71062243|gb|AAZ21246.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718245|gb|EAS84895.1| ferredoxin [Candidatus Pelagibacter ubique HTCC1002]
          Length = 108

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/107 (63%), Positives = 79/107 (73%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + CI CK  DCVEVCPVDCFYEG+N L I P+ECIDCGVCEPECPVDAI  DTE
Sbjct: 1   MTYVVNDKCIKCKLMDCVEVCPVDCFYEGKNMLVIKPEECIDCGVCEPECPVDAIVADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
            G E WL++N++Y+  WPNIT KK+      K    + KY+KYFS N
Sbjct: 61  SGSEKWLELNTKYSEIWPNITIKKDPPEDNEKYKNEENKYDKYFSEN 107


>gi|54297846|ref|YP_124215.1| hypothetical protein lpp1898 [Legionella pneumophila str. Paris]
 gi|53751631|emb|CAH13050.1| hypothetical protein lpp1898 [Legionella pneumophila str. Paris]
          Length = 111

 Score =  150 bits (379), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 76/103 (73%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + K+N+E +  WPNIT KK++   A   + VK K +
Sbjct: 61  LTEEQQQFKKLNAELSKTWPNITAKKDAPSDAKDWEEVKDKLQ 103


>gi|254499063|ref|ZP_05111755.1| ferredoxin II (4Fe-4S) [Legionella drancourtii LLAP12]
 gi|254351690|gb|EET10533.1| ferredoxin II (4Fe-4S) [Legionella drancourtii LLAP12]
          Length = 109

 Score =  150 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE+CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV+AI  + +
Sbjct: 1   MTFVVTESCIRCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVNAIVSEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A +W NIT KK++ P A   + VK K +
Sbjct: 61  LTDEQQQFKELNAELAQKWSNITAKKDAPPDAKDWEDVKDKLQ 103


>gi|302187930|ref|ZP_07264603.1| ferredoxin [Pseudomonas syringae pv. syringae 642]
 gi|330936780|gb|EGH40942.1| ferredoxin [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330975363|gb|EGH75429.1| ferredoxin [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 107

 Score =  149 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K  + 
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGKIAEL 105


>gi|332717239|ref|YP_004444705.1| Ferredoxin [Agrobacterium sp. H13-3]
 gi|325063924|gb|ADY67614.1| Ferredoxin [Agrobacterium sp. H13-3]
          Length = 111

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 78/112 (69%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M+YVVTENCI CK+ DCVEVCPV+CFY GEN L IHPD+CIDCG+CE ECP  AI+PDTE
Sbjct: 1   MSYVVTENCIACKYMDCVEVCPVECFYAGENMLVIHPDQCIDCGICERECPAAAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL +WL +N  Y+  WP +  K+     A  M+G   K+   FS NPG  +
Sbjct: 61  AGLHVWLDLNRHYSGIWPRVHQKRTPPDDADIMNGAAAKF-SIFSKNPGAGD 111


>gi|58040345|ref|YP_192309.1| ferredoxin [Gluconobacter oxydans 621H]
 gi|58002759|gb|AAW61653.1| Ferredoxin [Gluconobacter oxydans 621H]
          Length = 110

 Score =  149 bits (378), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 80/108 (74%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK TDCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFTDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W++IN++Y+TQWPN+T K +++P A +      K     S  P
Sbjct: 61  NRAAPWIEINAKYSTQWPNMTRKIDAMPDAEEWKDKPGK-AAMLSEAP 107


>gi|326794018|ref|YP_004311838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinomonas mediterranea MMB-1]
 gi|326544782|gb|ADZ90002.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Marinomonas mediterranea MMB-1]
          Length = 107

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP  AI  + E
Sbjct: 1   MAFIVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPAGAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E+++++N + A  WPNI  +K+ LP AA+ DGV+ K E  
Sbjct: 61  LPEGQEVFIELNQDLALIWPNIAERKDPLPDAAQWDGVEDKLEHL 105


>gi|171463171|ref|YP_001797284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192709|gb|ACB43670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 107

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 73/106 (68%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTYVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCVPECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++K+N+E +  W +IT  K +LP A +   VK K ++  
Sbjct: 61  VPGDQQSFIKLNAELSPSWTSITKSKAALPDAEEWKDVKNKLDQLV 106


>gi|126667869|ref|ZP_01738835.1| RecA DNA recombination protein [Marinobacter sp. ELB17]
 gi|126627685|gb|EAZ98316.1| RecA DNA recombination protein [Marinobacter sp. ELB17]
          Length = 107

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT++VT+NCI CKHTDCVEVCPVDCFYEG NFL I PDECIDC +CEPECPV+AI  + E
Sbjct: 1   MTFIVTDNCIKCKHTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPVEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                ++++++N++ A +WPNIT KKE++  A K DGV  K +
Sbjct: 61  LPDNQKVFIELNADLAGKWPNITEKKEAMVDAEKWDGVPDKLQ 103


>gi|71736534|ref|YP_275946.1| ferredoxin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487048|ref|ZP_05641089.1| ferredoxin [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|71557087|gb|AAZ36298.1| ferredoxin [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323088|gb|EFW79177.1| ferredoxin [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329640|gb|EFW85629.1| ferredoxin [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330878041|gb|EGH12190.1| ferredoxin [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330894626|gb|EGH27287.1| ferredoxin [Pseudomonas syringae pv. mori str. 301020]
 gi|330985142|gb|EGH83245.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009313|gb|EGH89369.1| ferredoxin [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 107

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKPGKIADL 105


>gi|229588702|ref|YP_002870821.1| ferredoxin I [Pseudomonas fluorescens SBW25]
 gi|37930233|gb|AAP76284.1| unknown [Pseudomonas sp. PCL1171]
 gi|229360568|emb|CAY47425.1| ferredoxin I [Pseudomonas fluorescens SBW25]
          Length = 107

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 77/105 (73%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
               ++ ++++N E A  WPNIT +K+ +P AA+ DG K K    
Sbjct: 61  VPAEMQEFIQLNVELAEIWPNITERKDPMPDAAEWDGKKGKIADL 105


>gi|114570845|ref|YP_757525.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Maricaulis maris MCS10]
 gi|114341307|gb|ABI66587.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Maricaulis
           maris MCS10]
          Length = 113

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 86/113 (76%), Gaps = 1/113 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPECPV+AIKPDTE
Sbjct: 1   MTYIVTDACVRCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPECPVEAIKPDTE 60

Query: 61  PG-LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                 WL INS++A  WPNIT +K++   A  M     KYEKYFS  PG  +
Sbjct: 61  DDKDGKWLAINSKFAETWPNITLRKDAPADADAMADETGKYEKYFSEKPGSGD 113


>gi|330959230|gb|EGH59490.1| ferredoxin [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 107

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K  + 
Sbjct: 61  IPAGMENFIELNAELADVWPNITEKKDAMPDAAEWDGKPGKIAEL 105


>gi|66044623|ref|YP_234464.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255330|gb|AAY36426.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
           syringae B728a]
 gi|330896093|gb|EGH28314.1| ferredoxin [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330968926|gb|EGH68992.1| ferredoxin [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 107

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 61  IPAGMENFIELNAELAEIWPNITEKKDAMPDAAEWDGKTGKIADL 105


>gi|296115139|ref|ZP_06833780.1| ferredoxin [Gluconacetobacter hansenii ATCC 23769]
 gi|295978240|gb|EFG84977.1| ferredoxin [Gluconacetobacter hansenii ATCC 23769]
          Length = 110

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/108 (61%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVISPDECIDCGVCEPECPAEAIFPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN++YA  WPNIT K ++   A +      K E   SP P
Sbjct: 61  DRATAWAEINAKYAGVWPNITRKGDAPADAEEWKDKPNKAE-LLSPEP 107


>gi|10120847|pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
           Vinelandii 7fe Ferredoxin (Fdi)
          Length = 106

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
            +VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECID  +CEPECP  AI  + E 
Sbjct: 1   AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDDALCEPECPAQAIFSEDEV 60

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              ++ ++++N+E A  WPNIT KK+ LP A   DGVK K +  
Sbjct: 61  PEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHL 104


>gi|289626002|ref|ZP_06458956.1| ferredoxin [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651482|ref|ZP_06482825.1| ferredoxin [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488244|ref|ZP_07006279.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157252|gb|EFH98337.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330868574|gb|EGH03283.1| ferredoxin [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330950645|gb|EGH50905.1| ferredoxin [Pseudomonas syringae Cit 7]
          Length = 107

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E
Sbjct: 1   MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G+E ++++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 61  IPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGKIADL 105


>gi|90416735|ref|ZP_01224665.1| ferredoxin I [marine gamma proteobacterium HTCC2207]
 gi|90331488|gb|EAS46724.1| ferredoxin I [marine gamma proteobacterium HTCC2207]
          Length = 107

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT++V +NCI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI  + E
Sbjct: 1   MTFIVGDNCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVGAIFAEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++L+IN+E A  WPNIT  K++   AA+ DGV+ K +
Sbjct: 61  IPEGQEVFLEINAELADVWPNITEMKDAPADAAEWDGVENKLQ 103


>gi|152997736|ref|YP_001342571.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Marinomonas sp. MWYL1]
 gi|150838660|gb|ABR72636.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Marinomonas
           sp. MWYL1]
          Length = 107

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++VT+NCI CK+TDCVEVCPVDCFYEG NFLAI+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MAFIVTDNCIRCKYTDCVEVCPVDCFYEGPNFLAINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                E+++++N + +  WPNI  KK++LP AA+ DGV+ K E  
Sbjct: 61  LPEDQEVFVELNRDLSLIWPNIAEKKDALPDAAQWDGVEDKLEHL 105


>gi|307824341|ref|ZP_07654567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacter
           tundripaludum SV96]
 gi|307734721|gb|EFO05572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacter
           tundripaludum SV96]
          Length = 107

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK TDCV+VCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKFTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIFAEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E+++ +N+E A QWP IT  K +LP A + +G + K +  
Sbjct: 61  LPEGQEVFIALNAELAKQWPVITDVKPALPEADEWNGKEGKLDLL 105


>gi|145588570|ref|YP_001155167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046976|gb|ABP33603.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 107

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 73/106 (68%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTYVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCVPECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++K+N+E +  W +IT  K +LP A +   VK K ++  
Sbjct: 61  VPGDQQSFIKLNAELSPDWTSITKSKPALPDADEWKDVKNKLDQLV 106


>gi|159186232|ref|NP_356078.2| ferredoxin [Agrobacterium tumefaciens str. C58]
 gi|159141366|gb|AAK88863.2| ferredoxin [Agrobacterium tumefaciens str. C58]
          Length = 111

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 77/112 (68%), Gaps = 1/112 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTENCI CK+ DCVEVCPV+CFYEGEN L IHPD+CIDCG+CE ECP  AI+PDTE
Sbjct: 1   MPYVVTENCIACKYMDCVEVCPVECFYEGENMLVIHPDQCIDCGICERECPAAAIRPDTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            GL +WL +N  Y+  WP +  K+    +A  M+G   K+    S NPG   
Sbjct: 61  AGLHVWLDLNRHYSGIWPRVHQKRTPPDNADTMNGAAAKF-SILSKNPGAGG 111


>gi|162147815|ref|YP_001602276.1| ferredoxin [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542438|ref|YP_002274667.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786392|emb|CAP55974.1| putative ferredoxin [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530115|gb|ACI50052.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 110

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK  DCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++
Sbjct: 1   MTYVVTENCIRCKFMDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                W +IN+ Y+ +WPNIT K  +   A +      K +   SP P
Sbjct: 61  DRAAAWAEINASYSAKWPNITRKGTAPADAEEWKDKPGKKD-LLSPEP 107


>gi|160871760|ref|ZP_02061892.1| ferredoxin [Rickettsiella grylli]
 gi|159120559|gb|EDP45897.1| ferredoxin [Rickettsiella grylli]
          Length = 111

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT++VTE CI CK+TDCVEVCPVDCFYEG N L IHPDECIDCG+CEPECPV+AI    D
Sbjct: 5   MTFLVTEKCIRCKYTDCVEVCPVDCFYEGPNMLVIHPDECIDCGLCEPECPVNAIYVEDD 64

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +L +N E + +WPNI  +K+  P A +    + K 
Sbjct: 65  LPDKYKEFLALNKELSKKWPNIVRRKDPPPDADEWKDKEDKL 106


>gi|88810236|ref|ZP_01125493.1| ferredoxin, 4Fe-4S [Nitrococcus mobilis Nb-231]
 gi|88791866|gb|EAR22976.1| ferredoxin, 4Fe-4S [Nitrococcus mobilis Nb-231]
          Length = 107

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTENCI CK+TDCVEVCPVDCF+EG NFLAI P+ECIDC +CEPECP +AI  +  
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFHEGPNFLAIDPEECIDCTLCEPECPAEAIFSEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N+E A +WP IT  K++   A + DG   K +
Sbjct: 61  LPEEQHHFLELNAELAQKWPVITEMKDAPKDAEEWDGKPGKLQ 103


>gi|254252880|ref|ZP_04946198.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa AUO158]
 gi|124895489|gb|EAY69369.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa AUO158]
          Length = 134

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 28  MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 87

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 88  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKLHLL 132


>gi|93005103|ref|YP_579540.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
           cryohalolentis K5]
 gi|92392781|gb|ABE74056.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
           cryohalolentis K5]
          Length = 107

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/103 (63%), Positives = 78/103 (75%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCILCK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCILCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++ ++N E A +WPNIT  K  +P A K DGV+ K +
Sbjct: 61  VPKGQEIFTQLNEELAQKWPNITEMKGQMPEAEKWDGVEGKIQ 103


>gi|254282951|ref|ZP_04957919.1| RecA DNA recombination protein [gamma proteobacterium NOR51-B]
 gi|219679154|gb|EED35503.1| RecA DNA recombination protein [gamma proteobacterium NOR51-B]
          Length = 107

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++++N+E A  WPNIT KK+  P A    G   K +
Sbjct: 61  LPADQTEFMELNAELADIWPNITEKKDPPPDAEDWAGKPDKLQ 103


>gi|194365291|ref|YP_002027901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Stenotrophomonas maltophilia R551-3]
 gi|194348095|gb|ACF51218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Stenotrophomonas maltophilia R551-3]
          Length = 107

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CKHTDCVEVCPVDCF+EG NFL I PDECIDC +CEPECPV+AI P+  
Sbjct: 1   MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A +WP +T +K+    A + DG   K +  
Sbjct: 61  VPAGQESFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLL 105


>gi|237747779|ref|ZP_04578259.1| ferredoxin [Oxalobacter formigenes OXCC13]
 gi|229379141|gb|EEO29232.1| ferredoxin [Oxalobacter formigenes OXCC13]
          Length = 107

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CILCK+TDCV+VCPVDCF+EG N L I+P+ECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTDACILCKYTDCVDVCPVDCFHEGPNTLVINPNECIDCAVCVPECPAEAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N+E + +WP IT  K+ +P A K   VK K     
Sbjct: 61  VPENQQEFIALNAELSGKWPTITRSKDPMPDADKWKDVKDKLRHLI 106


>gi|82701854|ref|YP_411420.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosospira multiformis
           ATCC 25196]
 gi|82409919|gb|ABB74028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosospira
           multiformis ATCC 25196]
          Length = 107

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  + +
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYSEDD 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E +  W  I  KK++LP A     V +K EK 
Sbjct: 61  VPGTQQHFIALNAELSKSWKPIIEKKDALPDADDWAKVTEKLEKL 105


>gi|71064823|ref|YP_263550.1| ferredoxin [Psychrobacter arcticus 273-4]
 gi|71037808|gb|AAZ18116.1| ferredoxin, 4Fe-Fs binding domain [Psychrobacter arcticus 273-4]
          Length = 107

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCILCK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTDNCILCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E++ ++N E A +WPNIT  KE +P AAK DGV+ K +
Sbjct: 61  VPKGQEMFTQLNEELAQKWPNITEMKEQMPEAAKWDGVEGKIQ 103


>gi|260549538|ref|ZP_05823756.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|293608589|ref|ZP_06690892.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|260407331|gb|EEX00806.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|292829162|gb|EFF87524.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 107

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQKWPNITQIGDQPADREEWNGKPDKLQ 103


>gi|154246030|ref|YP_001416988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xanthobacter autotrophicus Py2]
 gi|154160115|gb|ABS67331.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xanthobacter
           autotrophicus Py2]
          Length = 120

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 77/112 (68%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT+NCI CK  DCV VCPVDCFYEGEN L I+PDECIDCGVCEPECP  AI  DT 
Sbjct: 1   MAYVVTDNCIRCKFMDCVAVCPVDCFYEGENMLVINPDECIDCGVCEPECPAAAIAADTA 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           P    W+ +N++YA  WPNI  KKE    AA+   V  K+E  FSP PG  +
Sbjct: 61  PEAGPWIALNAQYAALWPNIAEKKEPPADAAQWMDVADKFESAFSPAPGQAD 112


>gi|169632883|ref|YP_001706619.1| 7-Fe ferredoxin [Acinetobacter baumannii SDF]
 gi|169796509|ref|YP_001714302.1| 7-Fe ferredoxin [Acinetobacter baumannii AYE]
 gi|184157558|ref|YP_001845897.1| ferredoxin [Acinetobacter baumannii ACICU]
 gi|239503728|ref|ZP_04663038.1| ferredoxin [Acinetobacter baumannii AB900]
 gi|260555572|ref|ZP_05827793.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|301347837|ref|ZP_07228578.1| ferredoxin [Acinetobacter baumannii AB056]
 gi|301511664|ref|ZP_07236901.1| ferredoxin [Acinetobacter baumannii AB058]
 gi|301597645|ref|ZP_07242653.1| ferredoxin [Acinetobacter baumannii AB059]
 gi|332853960|ref|ZP_08435080.1| ferredoxin-1 [Acinetobacter baumannii 6013150]
 gi|332870215|ref|ZP_08439110.1| ferredoxin-1 [Acinetobacter baumannii 6013113]
 gi|332874292|ref|ZP_08442211.1| ferredoxin-1 [Acinetobacter baumannii 6014059]
 gi|169149436|emb|CAM87322.1| 7-Fe ferredoxin [Acinetobacter baumannii AYE]
 gi|169151675|emb|CAP00465.1| 7-Fe ferredoxin [Acinetobacter baumannii]
 gi|183209152|gb|ACC56550.1| Ferredoxin [Acinetobacter baumannii ACICU]
 gi|193076943|gb|ABO11677.2| 7-Fe ferredoxin [Acinetobacter baumannii ATCC 17978]
 gi|260412114|gb|EEX05411.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|332728316|gb|EGJ59697.1| ferredoxin-1 [Acinetobacter baumannii 6013150]
 gi|332732382|gb|EGJ63639.1| ferredoxin-1 [Acinetobacter baumannii 6013113]
 gi|332737517|gb|EGJ68425.1| ferredoxin-1 [Acinetobacter baumannii 6014059]
          Length = 107

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +WPNIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQKWPNITQIGEQPADREEWNGKPDKLQ 103


>gi|190573755|ref|YP_001971600.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|254523787|ref|ZP_05135842.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|190011677|emb|CAQ45296.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|219721378|gb|EED39903.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 107

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CKHTDCVEVCPVDCF+EG NFL I PDECIDC +CEPECPV+AI P+  
Sbjct: 1   MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A +WP +T +K+    A + DG   K +  
Sbjct: 61  VPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLL 105


>gi|294341325|emb|CAZ89740.1| ferredoxin [Thiomonas sp. 3As]
          Length = 107

 Score =  147 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI    D
Sbjct: 1   MTFVVTENCIKCKFTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E + +WP+IT +K + P   + +G   K +
Sbjct: 61  VPGDQQAFIALNAELSRRWPSITKRKPAPPDGEEWNGKPGKLQ 103


>gi|124266690|ref|YP_001020694.1| ferredoxin [Methylibium petroleiphilum PM1]
 gi|124259465|gb|ABM94459.1| ferredoxin [Methylibium petroleiphilum PM1]
          Length = 107

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI P  D
Sbjct: 1   MTHVVTEACIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAILPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ IN E + +WP+IT +K +LP A        K  +  
Sbjct: 61  VPGDQQQFIAINVELSKKWPSITKRKTALPDADDWKDRTDKLGELI 106


>gi|58582544|ref|YP_201560.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624429|ref|YP_451801.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427138|gb|AAW76175.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368369|dbj|BAE69527.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 107

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E +  WP +T ++E LP AA+ DG   K    
Sbjct: 61  VPAGQEGFVALNAELSKVWPVLTVRQEPLPDAAEWDGKPNKLPLL 105


>gi|332527731|ref|ZP_08403772.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332112129|gb|EGJ12105.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 107

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VV ++CI CK+TDCV+VCPVDCF EG NFL I P+ECIDC VC PECP +AI P  D
Sbjct: 1   MTHVVLDSCIRCKYTDCVDVCPVDCFREGPNFLVIDPEECIDCAVCIPECPANAILPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++++N+E A  WP+IT +K SLP A +    K K +
Sbjct: 61  VPADQLQFIQLNAELAKTWPSITKRKASLPDADEWKDRKNKLQ 103


>gi|220934455|ref|YP_002513354.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995765|gb|ACL72367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 107

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 75/103 (72%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VV ENCI CK+TDCVEVCPVDCF+EG NFL I P+ECIDC +CEPECP +AI P+  
Sbjct: 1   MTFVVIENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPEECIDCTLCEPECPAEAIVPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E +L++N+E + QWP ITT+KE    A + DG   K +
Sbjct: 61  IPEGQEDFLELNAELSRQWPVITTRKEPPADAEEWDGKPDKLK 103


>gi|30248037|ref|NP_840107.1| 7Fe ferredoxin [Nitrosomonas europaea ATCC 19718]
 gi|30179922|emb|CAD83917.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 107

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E +  W  I  KK++LP A +   V  K +K 
Sbjct: 61  VPEDQRQFIALNAELSKIWDPIIEKKDALPDADEWASVTDKLDKL 105


>gi|262369723|ref|ZP_06063051.1| 7-Fe ferredoxin [Acinetobacter johnsonii SH046]
 gi|262315791|gb|EEY96830.1| 7-Fe ferredoxin [Acinetobacter johnsonii SH046]
          Length = 107

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 73/103 (70%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E +  WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSQTWPNITQIGDQPADREEWNGKADKLQ 103


>gi|296135523|ref|YP_003642765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295795645|gb|ADG30435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 107

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI    D
Sbjct: 1   MTFVVTENCIRCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++K+N+E + QWP+IT +K +   A +      K +
Sbjct: 61  VPGDQQAFIKLNAELSRQWPSITKRKAAPDDADEWKDKPDKLQ 103


>gi|50084667|ref|YP_046177.1| 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|262278522|ref|ZP_06056307.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|299770827|ref|YP_003732853.1| ferredoxin [Acinetobacter sp. DR1]
 gi|15217085|gb|AAK92496.1|AF400582_5 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|49530643|emb|CAG68355.1| 7-Fe ferredoxin [Acinetobacter sp. ADP1]
 gi|262258873|gb|EEY77606.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|298700915|gb|ADI91480.1| ferredoxin [Acinetobacter sp. DR1]
          Length = 107

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGDQPADREEWNGKPDKLQ 103


>gi|148260834|ref|YP_001234961.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|326404228|ref|YP_004284310.1| ferredoxin [Acidiphilium multivorum AIU301]
 gi|146402515|gb|ABQ31042.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
 gi|325051090|dbj|BAJ81428.1| ferredoxin [Acidiphilium multivorum AIU301]
          Length = 110

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 69/111 (62%), Gaps = 1/111 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVTE+CI CK+ DCVEVCPVDCFY GEN L IHPDECIDCGVCEPECP +AI PD++
Sbjct: 1   MAYVVTESCIKCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAEAIVPDSD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              + W+  N E A  WPNIT K      A        K     S  PG  
Sbjct: 61  AKADAWIDQNRELAALWPNITRKGTPPEDADAWKDRPGKAASL-SREPGTP 110


>gi|255319931|ref|ZP_05361131.1| ferredoxin-1 [Acinetobacter radioresistens SK82]
 gi|262379624|ref|ZP_06072780.1| ferredoxin [Acinetobacter radioresistens SH164]
 gi|255302951|gb|EET82168.1| ferredoxin-1 [Acinetobacter radioresistens SK82]
 gi|262299081|gb|EEY86994.1| ferredoxin [Acinetobacter radioresistens SH164]
          Length = 107

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGEQPADREEWNGKPDKLQ 103


>gi|294339652|emb|CAZ88012.1| Ferredoxin [Thiomonas sp. 3As]
          Length = 107

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC PECP +AI    D
Sbjct: 1   MTFVVTENCIRCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++K+N+E + QWP+IT +K +   A +      K +
Sbjct: 61  VPGDQQAFIKLNAELSRQWPSITKRKAAPDDADEWKDKPDKLQ 103


>gi|15640822|ref|NP_230453.1| ferredoxin [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585764|ref|ZP_01675559.1| ferredoxin [Vibrio cholerae 2740-80]
 gi|121725986|ref|ZP_01679285.1| ferredoxin [Vibrio cholerae V52]
 gi|147673974|ref|YP_001216287.1| ferredoxin [Vibrio cholerae O395]
 gi|153800583|ref|ZP_01955169.1| ferredoxin [Vibrio cholerae MZO-3]
 gi|153817247|ref|ZP_01969914.1| ferredoxin [Vibrio cholerae NCTC 8457]
 gi|153821403|ref|ZP_01974070.1| ferredoxin [Vibrio cholerae B33]
 gi|153824599|ref|ZP_01977266.1| ferredoxin [Vibrio cholerae MZO-2]
 gi|153828258|ref|ZP_01980925.1| ferredoxin [Vibrio cholerae 623-39]
 gi|227080983|ref|YP_002809534.1| ferredoxin [Vibrio cholerae M66-2]
 gi|229505581|ref|ZP_04395091.1| ferredoxin [Vibrio cholerae BX 330286]
 gi|229510747|ref|ZP_04400226.1| ferredoxin [Vibrio cholerae B33]
 gi|229513058|ref|ZP_04402524.1| ferredoxin [Vibrio cholerae TMA 21]
 gi|229517868|ref|ZP_04407312.1| ferredoxin [Vibrio cholerae RC9]
 gi|229525447|ref|ZP_04414852.1| ferredoxin [Vibrio cholerae bv. albensis VL426]
 gi|229530070|ref|ZP_04419460.1| ferredoxin [Vibrio cholerae 12129(1)]
 gi|229608599|ref|YP_002879247.1| ferredoxin [Vibrio cholerae MJ-1236]
 gi|254285518|ref|ZP_04960482.1| ferredoxin [Vibrio cholerae AM-19226]
 gi|254847941|ref|ZP_05237291.1| ferredoxin [Vibrio cholerae MO10]
 gi|258627223|ref|ZP_05722011.1| Ferredoxin [Vibrio mimicus VM603]
 gi|297581203|ref|ZP_06943127.1| ferredoxin [Vibrio cholerae RC385]
 gi|298499064|ref|ZP_07008871.1| ferredoxin [Vibrio cholerae MAK 757]
 gi|9655253|gb|AAF93968.1| ferredoxin [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550127|gb|EAX60143.1| ferredoxin [Vibrio cholerae 2740-80]
 gi|121631468|gb|EAX63838.1| ferredoxin [Vibrio cholerae V52]
 gi|124123872|gb|EAY42615.1| ferredoxin [Vibrio cholerae MZO-3]
 gi|126512163|gb|EAZ74757.1| ferredoxin [Vibrio cholerae NCTC 8457]
 gi|126521113|gb|EAZ78336.1| ferredoxin [Vibrio cholerae B33]
 gi|146315857|gb|ABQ20396.1| ferredoxin [Vibrio cholerae O395]
 gi|148876212|gb|EDL74347.1| ferredoxin [Vibrio cholerae 623-39]
 gi|149741817|gb|EDM55846.1| ferredoxin [Vibrio cholerae MZO-2]
 gi|150424380|gb|EDN16317.1| ferredoxin [Vibrio cholerae AM-19226]
 gi|227008871|gb|ACP05083.1| ferredoxin [Vibrio cholerae M66-2]
 gi|227012628|gb|ACP08838.1| ferredoxin [Vibrio cholerae O395]
 gi|229333844|gb|EEN99330.1| ferredoxin [Vibrio cholerae 12129(1)]
 gi|229339028|gb|EEO04045.1| ferredoxin [Vibrio cholerae bv. albensis VL426]
 gi|229344583|gb|EEO09557.1| ferredoxin [Vibrio cholerae RC9]
 gi|229349951|gb|EEO14905.1| ferredoxin [Vibrio cholerae TMA 21]
 gi|229350712|gb|EEO15653.1| ferredoxin [Vibrio cholerae B33]
 gi|229357804|gb|EEO22721.1| ferredoxin [Vibrio cholerae BX 330286]
 gi|229371254|gb|ACQ61677.1| ferredoxin [Vibrio cholerae MJ-1236]
 gi|254843646|gb|EET22060.1| ferredoxin [Vibrio cholerae MO10]
 gi|258580525|gb|EEW05486.1| Ferredoxin [Vibrio mimicus VM603]
 gi|297534519|gb|EFH73356.1| ferredoxin [Vibrio cholerae RC385]
 gi|297543397|gb|EFH79447.1| ferredoxin [Vibrio cholerae MAK 757]
 gi|327483585|gb|AEA77992.1| ferredoxin [Vibrio cholerae LMA3894-4]
          Length = 107

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 +++++N+E A  WPN+T  K ++  AAK DGV  K +  
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLDML 105


>gi|166711847|ref|ZP_02243054.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|289662698|ref|ZP_06484279.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|325924485|ref|ZP_08186004.1| ferredoxin [Xanthomonas gardneri ATCC 19865]
 gi|325544980|gb|EGD16315.1| ferredoxin [Xanthomonas gardneri ATCC 19865]
          Length = 107

 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E LP AA+ DG   K    
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEPLPDAAEWDGKPNKLPLL 105


>gi|171059471|ref|YP_001791820.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170776916|gb|ACB35055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 107

 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI P  D
Sbjct: 1   MTHVVTESCIRCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAILPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ IN+E + +WP+IT +K +LP A +    K K  + 
Sbjct: 61  VPADQMKFIAINAELSPKWPSITKRKAALPDADEWKDRKDKLGEL 105


>gi|88813310|ref|ZP_01128549.1| ferrodoxin [Nitrococcus mobilis Nb-231]
 gi|88789482|gb|EAR20610.1| ferrodoxin [Nitrococcus mobilis Nb-231]
          Length = 108

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 56/102 (54%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE CI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +C PECPV+AI  D  
Sbjct: 1   MTYVVTERCIRCKYTDCVEVCPVDCFHEGRNFLVIDPDECIDCALCVPECPVEAIYADDR 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E + ++N++ A  WP IT +K +   A +      K 
Sbjct: 61  LPEGQERFFELNAQLARAWPVITRRKPAPADAEEWREATDKL 102


>gi|94311387|ref|YP_584597.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355239|gb|ABF09328.1| Ferredoxin [Cupriavidus metallidurans CH34]
          Length = 107

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E +  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIELNAELSRIWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|88857416|ref|ZP_01132059.1| putative ferredoxin [Pseudoalteromonas tunicata D2]
 gi|88820613|gb|EAR30425.1| putative ferredoxin [Pseudoalteromonas tunicata D2]
          Length = 121

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VV +NCI CK+TDCV VCPVD F+EG NFLAI P  CIDCG+CEPECP +AI  +  
Sbjct: 15  MAFVVGDNCIKCKYTDCVAVCPVDAFFEGPNFLAISPIICIDCGLCEPECPAEAIFQEDA 74

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +L++N+E A  WPNIT  K     A   +GVK K +
Sbjct: 75  LPAEQHQYLELNAELAEIWPNITQVKTPPADADSWNGVKDKLK 117


>gi|237745589|ref|ZP_04576069.1| ferredoxin-1 [Oxalobacter formigenes HOxBLS]
 gi|229376940|gb|EEO27031.1| ferredoxin-1 [Oxalobacter formigenes HOxBLS]
          Length = 107

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ C+LCK+TDCV+VCPVDCF+EG N L I+P+ECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTDACVLCKYTDCVDVCPVDCFHEGPNTLVINPNECIDCAVCVPECPSEAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N+E + +WP IT  K+ LP A K   VK K     
Sbjct: 61  VPADQQEYIALNAELSRKWPTITRSKDPLPDADKWKDVKNKIIHLI 106


>gi|21231193|ref|NP_637110.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66768799|ref|YP_243561.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991913|ref|YP_001903923.1| hypothetical protein xccb100_2518 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112835|gb|AAM41034.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66574131|gb|AAY49541.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733673|emb|CAP51878.1| fdx [Xanthomonas campestris pv. campestris]
          Length = 107

 Score =  146 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHAGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E LP AA+ DG   K    
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTVRQEPLPDAAEWDGKPDKLPLL 105


>gi|285017975|ref|YP_003375686.1| ferredoxin protein [Xanthomonas albilineans GPE PC73]
 gi|283473193|emb|CBA15699.1| putative ferredoxin protein [Xanthomonas albilineans]
          Length = 107

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHAGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP +TT++E L  AA+ DG   K 
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTTRQEPLADAAEWDGKPNKL 102


>gi|262376219|ref|ZP_06069449.1| 7-Fe ferredoxin [Acinetobacter lwoffii SH145]
 gi|262308820|gb|EEY89953.1| 7-Fe ferredoxin [Acinetobacter lwoffii SH145]
          Length = 107

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 74/103 (71%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N++ + +WPNIT   +      + +G   K +
Sbjct: 61  LPEGQEVFIELNADLSQKWPNITQIGDQPADREEWNGKADKLQ 103


>gi|325982038|ref|YP_004294440.1| Ferredoxin, C-terminal protein [Nitrosomonas sp. AL212]
 gi|325531557|gb|ADZ26278.1| Ferredoxin, C-terminal protein [Nitrosomonas sp. AL212]
          Length = 107

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI    D
Sbjct: 1   MAYVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E + +W  I  KK++LP A     VK K ++ 
Sbjct: 61  VPDEQTHFISLNAELSKEWRPIIEKKDALPDADDWASVKDKLDQL 105


>gi|257094884|ref|YP_003168525.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047408|gb|ACV36596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 107

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE+CI CK TDCV+VCPVDCF+EG NFL I PDECIDC +C PECP +AI    D
Sbjct: 1   MAYVVTESCIKCKFTDCVDVCPVDCFHEGPNFLVIDPDECIDCTLCVPECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E A  WP I  +K+ LP A + +G   K +
Sbjct: 61  VPDTQRAFIALNAELAKAWPTIVERKDPLPDADEWNGRADKLK 103


>gi|289669666|ref|ZP_06490741.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 107

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E+LP AA+ DG   K    
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEALPDAAEWDGKPNKLPLL 105


>gi|119897322|ref|YP_932535.1| ferredoxin [Azoarcus sp. BH72]
 gi|119669735|emb|CAL93648.1| probable ferredoxin [Azoarcus sp. BH72]
          Length = 107

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/101 (54%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE+CI CK+TDCV+VCPVDCF EGENFL I P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MAYVVTESCIRCKYTDCVDVCPVDCFREGENFLVIDPEECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+E A  W  I  +KE LP A +   VK K
Sbjct: 61  VPADQQQFIALNAELARTWKPIVERKEPLPDAEQWAKVKGK 101


>gi|91983712|gb|ABE68862.1| FdxA [Pseudomonas sp. Q12-87]
          Length = 104

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 102


>gi|325917219|ref|ZP_08179445.1| ferredoxin [Xanthomonas vesicatoria ATCC 35937]
 gi|325536560|gb|EGD08330.1| ferredoxin [Xanthomonas vesicatoria ATCC 35937]
          Length = 107

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E LP AA  DG   K    
Sbjct: 61  VPAGQEGFVALNAELAKAWPVLTVRQEPLPDAADWDGKPNKLPLL 105


>gi|83647900|ref|YP_436335.1| ferredoxin [Hahella chejuensis KCTC 2396]
 gi|83635943|gb|ABC31910.1| Ferredoxin [Hahella chejuensis KCTC 2396]
          Length = 107

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCFYEG NFL I PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFYEGPNFLVIDPDECIDCALCEPECPAEAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N E    WPNIT KK++   A    GVK K +  
Sbjct: 61  LPEDQKEFIALNEELCRVWPNITEKKDAPADADDWKGVKGKLKDL 105


>gi|237653740|ref|YP_002890054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237624987|gb|ACR01677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 107

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE CI CK+TDCV+VCPVDCF EG NFL I P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTERCIRCKYTDCVDVCPVDCFREGPNFLVIDPEECIDCTLCVAECPVEAIYSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E A QW  I  +K+ LP A     +K K  + 
Sbjct: 61  VPDDQKGYIALNAELAKQWKPIVERKDPLPDADHWARIKGKLGEL 105


>gi|289208208|ref|YP_003460274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288943839|gb|ADC71538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 107

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M ++V ENCI CK+TDCVEVCPVDCF+EG NFLAI PDECIDC +CEPECP +AI P+  
Sbjct: 1   MAFIVLENCIKCKYTDCVEVCPVDCFHEGPNFLAIDPDECIDCTLCEPECPAEAIVPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++N+E +  WP IT +K+    A + DGV+ K +  
Sbjct: 61  VPEDQLQFIELNAELSRTWPVITARKDPPEDAEEWDGVEGKLKHL 105


>gi|292492665|ref|YP_003528104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291581260|gb|ADE15717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 112

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 71/100 (71%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI  + +
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
              E   +LK+N+E A  WP IT  KE    A + D +K 
Sbjct: 61  LPEEHRNYLKLNAELARNWPVITESKEPPSDADQWDRIKN 100


>gi|300310955|ref|YP_003775047.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gi|300073740|gb|ADJ63139.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT++C+ C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTDSCVRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E +  WP+IT  K  LP A +      K +
Sbjct: 61  VPADQQQYIALNAELSRSWPSITKTKAPLPEAEEWKDKTDKLQ 103


>gi|153005139|ref|YP_001379464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028712|gb|ABS26480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 108

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDCG CEP CP  AI P+  
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCGACEPACPTKAIFPEES 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N++    WPNI+ KK+ LP A +   V++K +
Sbjct: 61  LPAKWKEYTQLNADLCKTWPNISEKKDPLPDADQWKDVEEKRQ 103


>gi|114330158|ref|YP_746380.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nitrosomonas eutropha C91]
 gi|114307172|gb|ABI58415.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nitrosomonas
           eutropha C91]
          Length = 107

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +C  ECPV+AI  + +
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPVEAIYAEDD 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E +  W  I  KK++LP A +   V  K +  
Sbjct: 61  VAEDQRRFIALNAELSKIWEPIIEKKDALPDADEWASVTDKLDHL 105


>gi|119504839|ref|ZP_01626917.1| RecA DNA recombination protein [marine gamma proteobacterium
           HTCC2080]
 gi|119459444|gb|EAW40541.1| RecA DNA recombination protein [marine gamma proteobacterium
           HTCC2080]
          Length = 107

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP+DAI  + E
Sbjct: 1   MTFVVGEDCINCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPIDAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E +L +N+E A  WPNIT KK +L  A    G   K    
Sbjct: 61  LPAGQEQFLALNTELADIWPNITEKKPALEDAEAWTGKSDKLPLL 105


>gi|326317032|ref|YP_004234704.1| ferredoxin, C-terminal protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373868|gb|ADX46137.1| Ferredoxin, C-terminal protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 107

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 73/106 (68%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++K+N+E A QW +IT +K SLP A + +G   K  +  
Sbjct: 61  LPADQQAFIKLNAELAPQWKSITKRKASLPDADEWNGKPGKIAELV 106


>gi|40062704|gb|AAR37617.1| ferredoxin [uncultured marine bacterium 314]
          Length = 113

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/114 (61%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V +NCI CK  DCV+VCPVDCFYEGEN LAI PDECIDCGVCEPECP+DAIKPDT+
Sbjct: 1   MTYIVNDNCIKCKLMDCVDVCPVDCFYEGENMLAIKPDECIDCGVCEPECPIDAIKPDTD 60

Query: 61  PGLELWLKINSEYATQWPNITTKK--ESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            G   W++ N++Y   WPNIT K+  +      K  GVK K  KYFS  PG  +
Sbjct: 61  EGASDWVEHNTKYGDLWPNITKKRSEDVPHDQEKWRGVKDKL-KYFSEKPGKGD 113


>gi|30580420|sp|Q44037|FER1_AFIFE RecName: Full=Ferredoxin-1
 gi|550302|emb|CAA57420.1| ferredoxin [Afipia felis]
          Length = 93

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/93 (74%), Positives = 76/93 (81%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
            LE WL +N+EYA  WPNIT KK++   A + 
Sbjct: 61 QNLEKWLGVNAEYAKTWPNITQKKDAPADAKEF 93


>gi|170745425|ref|YP_001766882.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659026|gb|ACB28080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 112

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/104 (67%), Positives = 75/104 (72%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFY GE  L I PDECIDCGVCEPECP DAIK DTE
Sbjct: 1   MTYVVTENCIRCKYTDCVEVCPVDCFYVGETMLVIDPDECIDCGVCEPECPADAIKADTE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           PGLE W   N++YA  WPNI  K +    AA+ DG   K    F
Sbjct: 61  PGLEGWKAFNAKYAALWPNIAEKVDPAADAAEWDGRDGKLIAVF 104


>gi|229523379|ref|ZP_04412786.1| ferredoxin [Vibrio cholerae TM 11079-80]
 gi|229339742|gb|EEO04757.1| ferredoxin [Vibrio cholerae TM 11079-80]
          Length = 107

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 +++++N+E A  WPN+T  K ++  A K DGV  K +  
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEDAVKWDGVPNKLDML 105


>gi|258619992|ref|ZP_05715032.1| Ferredoxin [Vibrio mimicus VM573]
 gi|258587725|gb|EEW12434.1| Ferredoxin [Vibrio mimicus VM573]
          Length = 107

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECTAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 +++++N+E A  WPN+T  K ++  A+K DGV  K +  
Sbjct: 61  LVGDQRIFIELNAELAEHWPNLTEVKPAMEEASKWDGVPNKLDML 105


>gi|91784742|ref|YP_559948.1| putative ferredoxin [Burkholderia xenovorans LB400]
 gi|296158268|ref|ZP_06841100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
 gi|91688696|gb|ABE31896.1| Putative ferredoxin [Burkholderia xenovorans LB400]
 gi|295891604|gb|EFG71390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
          Length = 107

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++++N++ A  WP+IT  K  LP A +   VK K E   
Sbjct: 61  VPGDQQNFIELNADLAKSWPSITKTKAPLPEADEFKDVKDKLELLV 106


>gi|300021613|ref|YP_003754224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523434|gb|ADJ21903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 114

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/114 (60%), Positives = 80/114 (70%), Gaps = 2/114 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDCVEVCPVDCFYEGEN L IHPDECIDCGVC PECP +AI  D E
Sbjct: 1   MTYVVTENCIKCKYTDCVEVCPVDCFYEGENMLVIHPDECIDCGVCVPECPAEAIFSDAE 60

Query: 61  PGL-ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           P     WL +N ++A QWPNI  KK ++P A   +G   K  + FSP    ++ 
Sbjct: 61  PQATAHWLDLNRKHADQWPNIVAKKAAMPDADAENGRAGKAAE-FSPEAATEDA 113


>gi|221134033|ref|ZP_03560338.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola sp.
           HTCC2999]
          Length = 108

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +C PECP DAI  D +
Sbjct: 1   MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCELCVPECPADAIVQDEK 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
             P    +L++N+E A QWPNI   K +   A K +GV  K     
Sbjct: 61  ISPDQAQFLELNAELAKQWPNINEMKPAPADADKWNGVANKIPLLL 106


>gi|120611719|ref|YP_971397.1| 4Fe-4S ferredoxin [Acidovorax citrulli AAC00-1]
 gi|120590183|gb|ABM33623.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           citrulli AAC00-1]
          Length = 107

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++K+N+E A QW +IT +K SLP A + +G   K     
Sbjct: 61  LPADQQAFIKLNAELAPQWKSITKRKASLPDADEWNGKPGKIADLI 106


>gi|91983682|gb|ABE68847.1| FdxA [Pseudomonas sp. Q65c-80]
 gi|91983716|gb|ABE68864.1| FdxA [Pseudomonas sp. TM1A3]
 gi|91983718|gb|ABE68865.1| FdxA [Pseudomonas sp. C*1A1]
 gi|91983720|gb|ABE68866.1| FdxA [Pseudomonas sp. TM1B2]
 gi|91983732|gb|ABE68872.1| FdxA [Pseudomonas sp. K93.3]
 gi|91983734|gb|ABE68873.1| FdxA [Pseudomonas sp. P96.25]
          Length = 104

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 102


>gi|291613179|ref|YP_003523336.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291583291|gb|ADE10949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 107

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF+EG NFL I P ECIDC +C  ECP +AI    D
Sbjct: 1   MAYVVTENCIKCKYTDCVDVCPVDCFHEGPNFLVIDPGECIDCTLCVAECPANAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  ++ +N+E A QW  I  KK +   A +   VK K 
Sbjct: 61  VPVDQRQFIALNAELAKQWKVIVEKKAAPADADEWRDVKDKL 102


>gi|134094047|ref|YP_001099122.1| 7-Fe ferredoxin [Herminiimonas arsenicoxydans]
 gi|133737950|emb|CAL60995.1| Ferredoxin-1 (Ferredoxin I) (FdI) [Herminiimonas arsenicoxydans]
          Length = 107

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT++C+LC++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTDSCVLCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++K+N E +  WP+IT  K  LP A +      K +
Sbjct: 61  VPADQQHYIKLNVELSRNWPSITKTKAPLPEAEEWKDKTDKLQ 103


>gi|157376399|ref|YP_001474999.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318773|gb|ABV37871.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 107

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVT+NCI CK+TDCV VCPVD F+EG NFLAI+P+ CIDC +C PEC   AI  +  
Sbjct: 1   MAFVVTDNCIRCKYTDCVAVCPVDAFHEGPNFLAINPEVCIDCDLCVPECAAQAIFQEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
              G+E +L++N+E A  WP IT  KE+   A + DGVK K E   
Sbjct: 61  LPEGMEQYLELNAELAQIWPVITEVKEAPADAEEWDGVKNKREHLI 106


>gi|300112903|ref|YP_003759478.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Nitrosococcus watsonii C-113]
 gi|299538840|gb|ADJ27157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           watsonii C-113]
          Length = 112

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI    D
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                + +L+IN+E A  WP IT  KE    A + D +K 
Sbjct: 61  VPKEHQKYLEINAELARSWPVITESKEPPADADQWDRIKN 100


>gi|91776028|ref|YP_545784.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus flagellatus
           KT]
 gi|91710015|gb|ABE49943.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
           flagellatus KT]
          Length = 107

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MAYVVTENCIQCKYTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++++N+  A  WP+IT +K  LP A   +GV  K     
Sbjct: 61  VPEDQQEFIELNARLAQIWPSITARKAPLPDADANNGVPGKRSLLI 106


>gi|187924909|ref|YP_001896551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
 gi|187716103|gb|ACD17327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 107

 Score =  144 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++++N+E A  WP+IT  K  LP A +   VK+K E  
Sbjct: 61  VPGDQQNFIELNAELAKNWPSITKTKAPLPEADEFKDVKEKLELL 105


>gi|88798288|ref|ZP_01113874.1| ferrodoxin, 4Fe-4S [Reinekea sp. MED297]
 gi|88779064|gb|EAR10253.1| ferrodoxin, 4Fe-4S [Reinekea sp. MED297]
          Length = 107

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VV ENCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + +
Sbjct: 1   MAFVVIENCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAEAILSEDE 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++N+E A  WPNIT +K+ LP A + +GV  K  + 
Sbjct: 61  VPADQIDFIELNAELAEVWPNITEQKDPLPDADEQNGVPNKRTEL 105


>gi|108762705|ref|YP_631259.1| ferrodoxin, 4Fe-4S [Myxococcus xanthus DK 1622]
 gi|108466585|gb|ABF91770.1| ferrodoxin, 4Fe-4S [Myxococcus xanthus DK 1622]
          Length = 111

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV + CI CK+TDCVEVCPV+CFYEG NFL IHPDECIDCG CEP CP  AI P+TE
Sbjct: 1   MAYVVADPCIKCKYTDCVEVCPVNCFYEGANFLVIHPDECIDCGACEPVCPTKAIFPETE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                + +  +N++ +T+WPNI  KK +LP A +      K      P PG 
Sbjct: 61  LPEQWKEYKALNADLSTKWPNIAEKKSALPEAEEFKSKDGKR-SLLDPAPGS 111


>gi|302879644|ref|YP_003848208.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Gallionella capsiferriformans ES-2]
 gi|302582433|gb|ADL56444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 107

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVV+ENCI CK TDCV+VCPVDCF EG NFL I PDECIDC +C  ECP +AI  +  
Sbjct: 1   MTYVVSENCIKCKFTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCVAECPAEAIFAEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +  +N+E +  W  I  KK+    A +  GVK K    
Sbjct: 61  LPADQTHFTALNAELSKLWGVIVEKKDPPADAEEWQGVKDKLHLL 105


>gi|119476595|ref|ZP_01616905.1| 7-Fe ferredoxin [marine gamma proteobacterium HTCC2143]
 gi|119449851|gb|EAW31087.1| 7-Fe ferredoxin [marine gamma proteobacterium HTCC2143]
          Length = 107

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEQCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIYSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                ++++++N+E A  WPNIT  K     A +      K E  
Sbjct: 61  LPEDQQVFMELNTELAEVWPNITEIKAPPADAEEWAHKPNKLELL 105


>gi|73541973|ref|YP_296493.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72119386|gb|AAZ61649.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 107

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIDLNAELARNWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|113868553|ref|YP_727042.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527329|emb|CAJ93674.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 107

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFINLNAELARNWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|109896757|ref|YP_660012.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas atlantica
           T6c]
 gi|109699038|gb|ABG38958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Pseudoalteromonas
           atlantica T6c]
          Length = 107

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/103 (54%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFL I PD CIDC +CEPECP  AI  D  
Sbjct: 1   MTFVVTDNCIKCKYTDCVAVCPVDAFFEGPNFLVIDPDICIDCALCEPECPAKAIFQDDK 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
             PG E + ++N+E +  WPNI         A + DGV  K E
Sbjct: 61  LPPGQEAFNELNAELSKIWPNIIEVIPPPADAKEWDGVPNKIE 103


>gi|91983728|gb|ABE68870.1| FdxA [Pseudomonas sp. P97.6]
          Length = 104

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  GQENFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 102


>gi|194290186|ref|YP_002006093.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193224021|emb|CAQ70030.1| putative FERREDOXIN PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 107

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A  WP+IT  K  L  A +      K +
Sbjct: 61  VPGDQQQFIELNAELARAWPSITKTKAPLAEAEEWKDATDKLQ 103


>gi|262277940|ref|ZP_06055733.1| ferredoxin-1 (Ferredoxin I) (FdI) [alpha proteobacterium HIMB114]
 gi|262225043|gb|EEY75502.1| ferredoxin-1 (Ferredoxin I) (FdI) [alpha proteobacterium HIMB114]
          Length = 107

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/107 (62%), Positives = 78/107 (72%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+V E CI CK TDCV+VCPVDCFYEGEN L I+PDECIDCGVCEPECP+DAI+PDT 
Sbjct: 1   MTYIVNEKCIKCKLTDCVDVCPVDCFYEGENMLVINPDECIDCGVCEPECPIDAIEPDTN 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
             +E  L +N EY+ +WPNI+ KKE L    K    K K+ KYF   
Sbjct: 61  ANVEEMLLVNKEYSLKWPNISKKKEPLNDWEKYKDEKDKFNKYFEKK 107


>gi|91783228|ref|YP_558434.1| putative 4Fe-4S ferredoxin [Burkholderia xenovorans LB400]
 gi|91687182|gb|ABE30382.1| Putative 4Fe-4S ferredoxin [Burkholderia xenovorans LB400]
          Length = 107

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 70/102 (68%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIQCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  ++K+N+E A +WP IT  K  L  A +   VK K+
Sbjct: 61  VPRDQRHFIKLNAELARRWPGITKTKAPLAEADRFKDVKDKF 102


>gi|91983674|gb|ABE68843.1| FdxA [Pseudomonas protegens]
 gi|91983704|gb|ABE68858.1| FdxA [Pseudomonas protegens]
 gi|91983706|gb|ABE68859.1| FdxA [Pseudomonas sp. K94.41]
 gi|91983708|gb|ABE68860.1| FdxA [Pseudomonas sp. S8-62]
 gi|91983722|gb|ABE68867.1| FdxA [Pseudomonas protegens]
 gi|91983724|gb|ABE68868.1| FdxA [Pseudomonas protegens]
          Length = 104

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPE 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  EMQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 102


>gi|198282163|ref|YP_002218484.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666462|ref|YP_002424528.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246684|gb|ACH82277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518675|gb|ACK79261.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 108

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/105 (56%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVTENCI CK+TDC EVCPV+CF+EG NFL I P ECIDC  C PECP DAI  D E
Sbjct: 1   MTYVVTENCIQCKYTDCAEVCPVECFHEGPNFLVIDPVECIDCAACVPECPADAIFADDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P    +  IN+E A  WP I  KK +LP A   +G   K    
Sbjct: 61  VPPDQRDFTAINAELARDWPVILRKKAALPDAETWNGKGDKRPLL 105


>gi|56478120|ref|YP_159709.1| ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56314163|emb|CAI08808.1| Ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 107

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE CI CK+TDCV+VCPVDCF EG NFLAI P ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTEACIRCKYTDCVDVCPVDCFREGANFLAIDPTECIDCTLCVAECPVEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N+E A QW  I  +K+ LP A +      K ++ 
Sbjct: 61  VPEGQRHFIALNAELAQQWKPIVERKDPLPDADEWAKRTGKLDEL 105


>gi|21242508|ref|NP_642090.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|78047349|ref|YP_363524.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|294626612|ref|ZP_06705209.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294666343|ref|ZP_06731591.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325927274|ref|ZP_08188530.1| ferredoxin [Xanthomonas perforans 91-118]
 gi|21107958|gb|AAM36626.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|78035779|emb|CAJ23470.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|292599032|gb|EFF43172.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292603892|gb|EFF47295.1| ferredoxin [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325542350|gb|EGD13836.1| ferredoxin [Xanthomonas perforans 91-118]
          Length = 107

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTENCI CK+TDCVEVCPVDCF+ G NFL I PDECIDC +CEPECP +AI P+  
Sbjct: 1   MPFVVTENCIKCKYTDCVEVCPVDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              G E ++ +N+E A  WP +T ++E  P AA+ DG   K    
Sbjct: 61  VPAGQEAFVALNAELAKAWPVLTVRQEPAPDAAEWDGKPNKLPLL 105


>gi|160900089|ref|YP_001565671.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160365673|gb|ABX37286.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 109

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 71/107 (66%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++K+N+E +    W +IT +K SLP A   +G   K ++ 
Sbjct: 61  VPADQLAFIKLNAELSLEKGWKSITKRKASLPDADDWNGKPGKLDQL 107


>gi|297538391|ref|YP_003674160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylotenera sp. 301]
 gi|297257738|gb|ADI29583.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylotenera
           sp. 301]
          Length = 107

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTENCI CK TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MTYVVTENCIQCKFTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N+  A  WP IT++K +L  A  M+GV  K +   
Sbjct: 61  VPADQQEFIALNARLAELWPVITSRKAALEDAEAMNGVPGKRDLLI 106


>gi|187477594|ref|YP_785618.1| ferredoxin [Bordetella avium 197N]
 gi|115422180|emb|CAJ48704.1| ferredoxin [Bordetella avium 197N]
          Length = 107

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E + ++ +I+  K+ LP A + +GV+ K +  
Sbjct: 61  VPQDQMKFIALNAELSAEFASISRAKKPLPDADEWNGVQDKLQHL 105


>gi|15839190|ref|NP_299878.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9107823|gb|AAF85398.1|AE004067_5 ferredoxin [Xylella fastidiosa 9a5c]
          Length = 107

 Score =  144 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +  + +N+E A  WP +T ++E +P AA+ DG   K 
Sbjct: 61  VPTEQKQCIALNAELAKAWPVVTVRREPMPDAAEWDGKPDKL 102


>gi|91983730|gb|ABE68871.1| FdxA [Pseudomonas sp. P97.26]
          Length = 104

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP-- 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPT 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT +K++LP AA+ DG   K    
Sbjct: 61  GMENFIELNAELADIWPNITERKDALPDAAEWDGKPGKIADL 102


>gi|34498889|ref|NP_903104.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104740|gb|AAQ61097.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
          Length = 107

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/102 (56%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT+ CI CK+TDCVEVCPVDCF EG NFLAI PDECIDC +C PECPV AI    D
Sbjct: 1   MAYVVTDACIKCKYTDCVEVCPVDCFREGPNFLAIDPDECIDCSLCVPECPVGAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G E ++ +N+E A  WP+I  + + LP  A    VK K 
Sbjct: 61  VPKGQEAFIALNAELAKNWPSIVERIDPLPDHADWADVKDKL 102


>gi|107022176|ref|YP_620503.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia AU
           1054]
 gi|116689122|ref|YP_834745.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia cenocepacia HI2424]
 gi|170732410|ref|YP_001764357.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia cenocepacia MC0-3]
 gi|105892365|gb|ABF75530.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           cenocepacia AU 1054]
 gi|116647211|gb|ABK07852.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           cenocepacia HI2424]
 gi|169815652|gb|ACA90235.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           cenocepacia MC0-3]
          Length = 107

 Score =  143 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|28199843|ref|NP_780157.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|71275225|ref|ZP_00651512.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Dixon]
 gi|71899554|ref|ZP_00681710.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|71899939|ref|ZP_00682086.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|170731220|ref|YP_001776653.1| ferredoxin [Xylella fastidiosa M12]
 gi|182682594|ref|YP_001830754.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xylella fastidiosa M23]
 gi|28057964|gb|AAO29806.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|71164034|gb|EAO13749.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Dixon]
 gi|71730302|gb|EAO32386.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|71730683|gb|EAO32758.1| 4Fe-4S ferredoxin, iron-sulfur binding [Xylella fastidiosa Ann-1]
 gi|167966013|gb|ACA13023.1| ferredoxin [Xylella fastidiosa M12]
 gi|182632704|gb|ACB93480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xylella
           fastidiosa M23]
 gi|307578876|gb|ADN62845.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 107

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI P  D
Sbjct: 1   MPFVVTENCINCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPANAIYPEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +  + +N+E A  WP +T ++E +P AA+ +G   K 
Sbjct: 61  VPTEQKQCIALNAELAKAWPVVTVRREPMPDAAEWNGKPDKL 102


>gi|91983710|gb|ABE68861.1| FdxA [Pseudomonas sp. Q13-87]
 gi|91983726|gb|ABE68869.1| FdxA [Pseudomonas sp. Q7-87]
          Length = 104

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 102


>gi|83720589|ref|YP_442231.1| ferredoxin [Burkholderia thailandensis E264]
 gi|167581116|ref|ZP_02373990.1| ferredoxin [Burkholderia thailandensis TXDOH]
 gi|167619199|ref|ZP_02387830.1| ferredoxin [Burkholderia thailandensis Bt4]
 gi|257138424|ref|ZP_05586686.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83654414|gb|ABC38477.1| ferredoxin [Burkholderia thailandensis E264]
          Length = 107

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTELNAELAKAWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|330993479|ref|ZP_08317414.1| Ferredoxin-2 [Gluconacetobacter sp. SXCC-1]
 gi|329759509|gb|EGG76018.1| Ferredoxin-2 [Gluconacetobacter sp. SXCC-1]
          Length = 107

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/107 (57%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VTENCI CK TDCVEVCPVDCFY GENFL I+PDECIDCGVCEPECP +AI PD++    
Sbjct: 2   VTENCIRCKFTDCVEVCPVDCFYAGENFLVINPDECIDCGVCEPECPAEAIFPDSDDRAT 61

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
            W ++N++YA  WPNIT K ++   A +      K E   SP P   
Sbjct: 62  PWAELNAKYAAVWPNITRKLDAPADAEEWKDKPNKKE-LLSPEPQKG 107


>gi|161525374|ref|YP_001580386.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349889|ref|YP_001945517.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|160342803|gb|ABX15889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333911|dbj|BAG42981.1| ferredoxin [Burkholderia multivorans ATCC 17616]
          Length = 107

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKVWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|307730560|ref|YP_003907784.1| putative ferredoxin [Burkholderia sp. CCGE1003]
 gi|307585095|gb|ADN58493.1| putative ferredoxin [Burkholderia sp. CCGE1003]
          Length = 107

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++++N++ A  WP+IT  K  LP A +   VK+K     
Sbjct: 61  VPGDQQNFIELNADLAKSWPSITKTKAPLPEADEFKDVKEKLALLV 106


>gi|170696356|ref|ZP_02887486.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           graminis C4D1M]
 gi|323526893|ref|YP_004229046.1| putative ferredoxin [Burkholderia sp. CCGE1001]
 gi|170138762|gb|EDT06960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           graminis C4D1M]
 gi|323383895|gb|ADX55986.1| putative ferredoxin [Burkholderia sp. CCGE1001]
          Length = 107

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++++N++ A  WP+IT  K  LP A +   VK+K     
Sbjct: 61  VPGDQQNFIELNADLAKNWPSITKTKAPLPEADEFKDVKEKLALLV 106


>gi|167563567|ref|ZP_02356483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           oklahomensis EO147]
 gi|167570727|ref|ZP_02363601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           oklahomensis C6786]
          Length = 107

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N++ A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTELNADLAKIWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|17545833|ref|NP_519235.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17428127|emb|CAD14816.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 108

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYE 101
                + W+ IN+E A   WP+IT  K  LP A +   VK K +
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKSPLPDAEEWKDVKDKEQ 104


>gi|134295130|ref|YP_001118865.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia vietnamiensis G4]
 gi|134138287|gb|ABO54030.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           vietnamiensis G4]
 gi|325527386|gb|EGD04739.1| ferredoxin [Burkholderia sp. TJI49]
          Length = 107

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKNWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|91983686|gb|ABE68849.1| FdxA [Pseudomonas sp. PITR2]
          Length = 104

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP-- 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPT 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKTGKIADL 102


>gi|121594158|ref|YP_986054.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222111124|ref|YP_002553388.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120606238|gb|ABM41978.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221730568|gb|ACM33388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 107

 Score =  142 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++KIN+E   ++ +IT +K +LP A   +G   K ++ 
Sbjct: 61  LPSDQLAFIKINAELTPKFKSITKRKAALPDADDWNGKPGKLDQL 105


>gi|91983680|gb|ABE68846.1| FdxA [Pseudomonas sp. F113]
          Length = 104

 Score =  142 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 77/102 (75%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  GMENFIELNAELADIWPNITEKKDALPDAEEWDGKEGKIADL 102


>gi|88705822|ref|ZP_01103531.1| Ferredoxin [Congregibacter litoralis KT71]
 gi|88699893|gb|EAQ97003.1| Ferredoxin [Congregibacter litoralis KT71]
          Length = 107

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/102 (58%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E+CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E
Sbjct: 1   MTFVVGEDCIKCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++L++N+E A  WP IT  K +   A +  G   K 
Sbjct: 61  LPADQQVFLELNAELAEVWPCITEMKPAPEDAEEWAGKPGKL 102


>gi|77163722|ref|YP_342247.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosococcus oceani ATCC
           19707]
 gi|76882036|gb|ABA56717.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosococcus
           oceani ATCC 19707]
          Length = 112

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCVEVCPVDCF+EG NFL I PDECIDC +CEPECP +AI    D
Sbjct: 1   MTFVVTENCIKCKYTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPAEAIFSEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                + +L IN+E A  WP IT  KE    A + D +K 
Sbjct: 61  VPKEHQKYLGINAELAKSWPVITESKEPPADADQWDRIKN 100


>gi|149926235|ref|ZP_01914497.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149825053|gb|EDM84265.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 107

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 68/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E A  WP+IT  K  LP A     VK K +
Sbjct: 61  VPADQVKFIDMNVELAKDWPSITRMKAHLPDADDWKDVKDKLQ 103


>gi|115351029|ref|YP_772868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia ambifaria AMMD]
 gi|170700862|ref|ZP_02891850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria IOP40-10]
 gi|171317138|ref|ZP_02906340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MEX-5]
 gi|172060034|ref|YP_001807686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia ambifaria MC40-6]
 gi|115281017|gb|ABI86534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           ambifaria AMMD]
 gi|170134225|gb|EDT02565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria IOP40-10]
 gi|171097705|gb|EDT42535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MEX-5]
 gi|171992551|gb|ACB63470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           ambifaria MC40-6]
          Length = 107

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|296932695|gb|ADH93501.1| ferredoxin I [Pseudomonas sp. In5]
          Length = 104

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPE 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ ++++N E A  WPNIT KKES+P A + DGVK K +  
Sbjct: 61  EMQEFIQLNVELAEIWPNITEKKESMPDAEEWDGVKGKIKDL 102


>gi|300691906|ref|YP_003752901.1| ferredoxin (fdxA) [Ralstonia solanacearum PSI07]
 gi|299078966|emb|CBJ51626.1| Ferredoxin (fdxA) [Ralstonia solanacearum PSI07]
          Length = 108

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYE 101
                + W+ IN+E A   WP+IT  K  LP A +   VK K +
Sbjct: 61  VPADQQKWIAINAELAQSGWPSITKTKSPLPDAEEWKDVKDKEQ 104


>gi|253996373|ref|YP_003048437.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylotenera mobilis JLW8]
 gi|253983052|gb|ACT47910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylotenera
           mobilis JLW8]
          Length = 107

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 70/101 (69%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTENCI CK TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MTYVVTENCIQCKFTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                + ++ +N+  A  WP IT +KE+LP A  M+G   K
Sbjct: 61  VPADQQEYIALNARLAQVWPTITARKEALPDAEAMNGAPNK 101


>gi|121611231|ref|YP_999038.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555871|gb|ABM60020.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 109

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++K+N++  +A  W +IT +K +LP A + +G   K ++  
Sbjct: 61  LPADQLAFIKLNADLAFAAGWKSITKRKGALPDADEWNGKPGKVDQLI 108


>gi|167837385|ref|ZP_02464268.1| 4Fe-4S ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 107

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|253999231|ref|YP_003051294.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylovorus sp. SIP3-4]
 gi|313201319|ref|YP_004039977.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methylovorus sp. MP688]
 gi|253985910|gb|ACT50767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylovorus
           sp. SIP3-4]
 gi|312440635|gb|ADQ84741.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylovorus
           sp. MP688]
          Length = 107

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/106 (50%), Positives = 69/106 (65%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTENCI CK+TDCV+VCPVDCF EG NFLAI+PDECIDC +C  ECP +AI    D
Sbjct: 1   MAYVVTENCIQCKYTDCVDVCPVDCFVEGPNFLAINPDECIDCTLCVAECPAEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N+  +  WP IT +K+ LP A   +G   K +   
Sbjct: 61  VPADQQEFIALNARLSAIWPTITGRKDPLPDADSNNGKAGKRDLLV 106


>gi|206559364|ref|YP_002230125.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|206561234|ref|YP_002231999.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198035402|emb|CAR51278.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198037276|emb|CAR53198.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
          Length = 107

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPTDQQQFTELNAELAKNWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|1589261|prf||2210388A ferredoxin:ISOTYPE=II
          Length = 104

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 70/111 (63%), Gaps = 8/111 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVC PECP +AI      
Sbjct: 1   PYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCNPECPAEAI------ 54

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
               WL+IN ++A  WPNIT K  +L  A        K     S NPG   
Sbjct: 55  -AGKWLEINRKFADLWPNITRKGPALADADDWKDKPDK-TGLLSENPGKGT 103


>gi|29653919|ref|NP_819611.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|153208803|ref|ZP_01947030.1| ferrodoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154706253|ref|YP_001424826.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161829743|ref|YP_001596509.1| ferrodoxin [Coxiella burnetii RSA 331]
 gi|165919089|ref|ZP_02219175.1| ferrodoxin [Coxiella burnetii RSA 334]
 gi|212212928|ref|YP_002303864.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212218799|ref|YP_002305586.1| ferredoxin [Coxiella burnetii CbuK_Q154]
 gi|29541182|gb|AAO90125.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|120575709|gb|EAX32333.1| ferrodoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154355539|gb|ABS77001.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161761610|gb|ABX77252.1| ferrodoxin [Coxiella burnetii RSA 331]
 gi|165917223|gb|EDR35827.1| ferrodoxin [Coxiella burnetii RSA 334]
 gi|212011338|gb|ACJ18719.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212013061|gb|ACJ20441.1| ferredoxin [Coxiella burnetii CbuK_Q154]
          Length = 111

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/110 (52%), Positives = 72/110 (65%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV +NCI CK+TDCVEVCPVDCF EG N L I PDECIDC +C PECPVDAI  + +
Sbjct: 1   MTFVVIDNCIRCKYTDCVEVCPVDCFREGPNMLVIDPDECIDCNLCVPECPVDAIFAEDD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
              E   +L++N++ A +WP IT KKE+ P A     V  K +      P
Sbjct: 61  LPEEKHAFLEMNADLAKRWPLITAKKEAPPDADDWTEVPDKLQYLEEEWP 110


>gi|327481594|gb|AEA84904.1| ferredoxin, 4Fe-4S [Pseudomonas stutzeri DSM 4166]
          Length = 107

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MTYVVTENCI CK+TDCVEVCP DCF+EG NFL I+P+ CIDC +C PECP DAI  D  
Sbjct: 1   MTYVVTENCIRCKYTDCVEVCPADCFHEGPNFLVINPETCIDCSLCAPECPADAIFADNA 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
              G + +L++N+E A  WP IT     L  A        K 
Sbjct: 61  LPEGQQHFLELNAELAEVWPVITQSASPLAEAETWVDQSGKL 102


>gi|78065684|ref|YP_368453.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
 gi|77966429|gb|ABB07809.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
          Length = 107

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQDKLHLL 105


>gi|149187260|ref|ZP_01865558.1| ferredoxin [Vibrio shilonii AK1]
 gi|148838796|gb|EDL55735.1| ferredoxin [Vibrio shilonii AK1]
          Length = 107

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 68/102 (66%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D FYEG NF+ I P +CIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFYEGPNFMVISPIDCIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WPNIT  K ++  A K +GV  K 
Sbjct: 61  LTEDQQVFIELNAELAEVWPNITEVKPAMDEAEKWNGVPNKL 102


>gi|167586594|ref|ZP_02378982.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Burkholderia
           ubonensis Bu]
          Length = 107

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPSDQQQFTALNAELAKNWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|152982663|ref|YP_001352409.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282740|gb|ABR91150.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 107

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CILC++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCILCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                ++++K+N + + +WP+IT  K  +  A +      K +
Sbjct: 61  VPADQQVFIKLNVDLSREWPSITKTKPPMAEAEEWKDKTDKLQ 103


>gi|118594760|ref|ZP_01552107.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Methylophilales bacterium HTCC2181]
 gi|118440538|gb|EAV47165.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Methylophilales bacterium HTCC2181]
          Length = 108

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/108 (53%), Positives = 72/108 (66%), Gaps = 2/108 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFLAI P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTESCIQCKYTDCVDVCPVDCFVEGPNFLAIDPEECIDCTLCVAECPVEAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                + +++IN++ A  WP IT KK++LP A    G   K E     
Sbjct: 61  VPEDQQEFIEINAKLAKVWPIITAKKDALPDADAFAGQANKKELLIEE 108


>gi|91983672|gb|ABE68842.1| FdxA [Pseudomonas protegens]
          Length = 103

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PG 62
           VT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E    
Sbjct: 1   VTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPEE 60

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           ++ ++++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  MQEFIQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 101


>gi|238026583|ref|YP_002910814.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia glumae BGR1]
 gi|237875777|gb|ACR28110.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia glumae BGR1]
          Length = 107

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFTPLNAELAKLWPSITKTKPAPGDADEWKDVQDKLHLL 105


>gi|241662657|ref|YP_002981017.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|309781213|ref|ZP_07675950.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
 gi|240864684|gb|ACS62345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
 gi|308920034|gb|EFP65694.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
          Length = 109

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYE 101
                + W+ IN+E A   WP+IT  K+ LP A     VK K +
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKQPLPDADDWKDVKDKEQ 104


>gi|91983678|gb|ABE68845.1| FdxA [Pseudomonas sp. PILH1]
          Length = 104

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/102 (59%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   
Sbjct: 1   VVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPA 60

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           G+E ++++N+E A  WPNIT KK+ +P A + DG   K    
Sbjct: 61  GMENFIELNAELADVWPNITEKKDPMPGAEEWDGKTGKIADL 102


>gi|53720069|ref|YP_109055.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|76809315|ref|YP_334313.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|124383747|ref|YP_001028729.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126441887|ref|YP_001059835.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126453420|ref|YP_001067122.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|134277063|ref|ZP_01763778.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|167002775|ref|ZP_02268565.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|167720598|ref|ZP_02403834.1| putative ferredoxin [Burkholderia pseudomallei DM98]
 gi|167739587|ref|ZP_02412361.1| putative ferredoxin [Burkholderia pseudomallei 14]
 gi|167816790|ref|ZP_02448470.1| putative ferredoxin [Burkholderia pseudomallei 91]
 gi|167825197|ref|ZP_02456668.1| putative ferredoxin [Burkholderia pseudomallei 9]
 gi|167846694|ref|ZP_02472202.1| putative ferredoxin [Burkholderia pseudomallei B7210]
 gi|167903669|ref|ZP_02490874.1| putative ferredoxin [Burkholderia pseudomallei NCTC 13177]
 gi|167911917|ref|ZP_02499008.1| putative ferredoxin [Burkholderia pseudomallei 112]
 gi|217420695|ref|ZP_03452200.1| ferredoxin-1 [Burkholderia pseudomallei 576]
 gi|242316088|ref|ZP_04815104.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|254191212|ref|ZP_04897716.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|254195729|ref|ZP_04902155.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|254261489|ref|ZP_04952543.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|262193289|ref|YP_001081365.2| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|52210483|emb|CAH36466.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|76578768|gb|ABA48243.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|124291767|gb|ABN01036.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126221380|gb|ABN84886.1| ferredoxin-1 [Burkholderia pseudomallei 668]
 gi|126227062|gb|ABN90602.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|134250713|gb|EBA50792.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|157938884|gb|EDO94554.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|169652474|gb|EDS85167.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|217396107|gb|EEC36124.1| ferredoxin-1 [Burkholderia pseudomallei 576]
 gi|242139327|gb|EES25729.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|243061597|gb|EES43783.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|254220178|gb|EET09562.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|261835061|gb|ABO05614.2| ferredoxin [Burkholderia mallei NCTC 10247]
          Length = 107

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQHFTALNAELAKDWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|186475572|ref|YP_001857042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phymatum STM815]
 gi|184192031|gb|ACC69996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phymatum STM815]
          Length = 107

 Score =  141 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +  +N+E A  WP+IT  K  LP A     VK+K 
Sbjct: 61  VPGDQQHFTALNAELAKAWPSITKTKSPLPEADDFKDVKEKL 102


>gi|217968856|ref|YP_002354090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506183|gb|ACK53194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 117

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/115 (46%), Positives = 64/115 (55%), Gaps = 2/115 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV +CPVD F EG NFL I P+ECIDC +C  ECPVDAI P+ E
Sbjct: 1   MTHVVTEACIRCKYTDCVSMCPVDAFREGPNFLVIDPEECIDCTLCVAECPVDAIVPEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  +L +N+  A  WP I      LP A     V  K     +   G  + 
Sbjct: 61  LSDEQREYLALNAALAKDWPRIVEAHAPLPDADAWAKVADKRAWLDTARAGDPDA 115


>gi|167895283|ref|ZP_02482685.1| putative ferredoxin [Burkholderia pseudomallei 7894]
 gi|167919911|ref|ZP_02507002.1| putative ferredoxin [Burkholderia pseudomallei BCC215]
 gi|237813231|ref|YP_002897682.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|237504029|gb|ACQ96347.1| ferredoxin [Burkholderia pseudomallei MSHR346]
          Length = 107

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQQFTALNAELAKDWPSITKTKPAPADADEWKDVQEKLHLL 105


>gi|91788203|ref|YP_549155.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91697428|gb|ABE44257.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 109

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT++V+E+CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEY--ATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++K+N+E   A  W +IT +K++LP A +      K ++  
Sbjct: 61  VPADQLQFIKLNAELSRAAGWKSITKRKDALPDAEEWKDKTGKLDELV 108


>gi|149911417|ref|ZP_01900035.1| putative ferredoxin [Moritella sp. PE36]
 gi|149805525|gb|EDM65530.1| putative ferredoxin [Moritella sp. PE36]
          Length = 107

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CKH DCV VCP D F+EG NFL I P  CIDCG+C PECPVDAI  + E
Sbjct: 1   MAFVVTENCIKCKHGDCVPVCPADAFHEGPNFLVIDPIACIDCGLCVPECPVDAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                +++++IN E +  WP IT K E    A   DGV+ K 
Sbjct: 61  VPEDQQVFIEINEELSELWPVITEKCEPPADADDWDGVENKL 102


>gi|209521147|ref|ZP_03269874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. H160]
 gi|295677210|ref|YP_003605734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. CCGE1002]
 gi|209498422|gb|EDZ98550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. H160]
 gi|295437053|gb|ADG16223.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. CCGE1002]
          Length = 107

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIKCRYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N++ A  WP+IT  K  LP A +   VK+K     
Sbjct: 61  VPGDQQDFIALNADLAKAWPSITKTKAPLPEAEEFKDVKEKLALLV 106


>gi|300704516|ref|YP_003746119.1| ferredoxin (fdxa) [Ralstonia solanacearum CFBP2957]
 gi|299072180|emb|CBJ43512.1| Ferredoxin (fdxA) [Ralstonia solanacearum CFBP2957]
          Length = 108

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 3/104 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYE 101
                + W+ IN+E A   WP+IT  K  LP A +   VK K +
Sbjct: 61  VPADQQKWIAINAELAQAGWPSITKTKSPLPEADQWKDVKDKEQ 104


>gi|1169669|sp|P80448|FER2_RHORU RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II; Short=FdII
          Length = 106

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 70/111 (63%), Gaps = 8/111 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVTENCI CK+ DCVEVCPVDCFYEGENFL I+PDECIDCGVC PECP +AI      
Sbjct: 1   PYVVTENCIKCKYQDCVEVCPVDCFYEGENFLVINPDECIDCGVCNPECPAEAI------ 54

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
               WL+IN ++A  WPNIT K  +L  A        K     S NPG   
Sbjct: 55  -AGKWLEINRKFADLWPNITRKGPALADADDWKDKPDK-TGLLSENPGKGT 103


>gi|255020217|ref|ZP_05292286.1| putative ferredoxin [Acidithiobacillus caldus ATCC 51756]
 gi|254970359|gb|EET27852.1| putative ferredoxin [Acidithiobacillus caldus ATCC 51756]
          Length = 108

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 64/105 (60%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVTENCI CK+TDC EVCPV+CF+EG NFLAI P ECIDC  C PECP DAI    D
Sbjct: 1   MTYVVTENCIQCKYTDCAEVCPVECFHEGPNFLAIDPVECIDCAACVPECPADAIFAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +  +N+E +  WP I  KK +   A + +G   K    
Sbjct: 61  VPEDQRDFTALNAELSKHWPVILRKKAAPADADEWNGKPGKRPLL 105


>gi|303257808|ref|ZP_07343818.1| ferredoxin, 4Fe-4S [Burkholderiales bacterium 1_1_47]
 gi|330998771|ref|ZP_08322499.1| ferredoxin-1 [Parasutterella excrementihominis YIT 11859]
 gi|302859411|gb|EFL82492.1| ferredoxin, 4Fe-4S [Burkholderiales bacterium 1_1_47]
 gi|329576268|gb|EGG57784.1| ferredoxin-1 [Parasutterella excrementihominis YIT 11859]
          Length = 109

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/103 (53%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVTE CILCK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI  + D
Sbjct: 1   MAHVVTEPCILCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPTNAIMAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++ +N+E A  WP+IT  K     A K   V  K +
Sbjct: 61  VPEDQQEFIALNAELARVWPSITRMKPHTDEAEKWRDVLDKRQ 103


>gi|330815952|ref|YP_004359657.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           gladioli BSR3]
 gi|327368345|gb|AEA59701.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
           gladioli BSR3]
          Length = 107

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEGCIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V+ K    
Sbjct: 61  VPGDQQQFAPLNAELAKLWPSITKTKPAPGDADEWKDVQDKLHLL 105


>gi|74316053|ref|YP_313793.1| 7Fe ferredoxin [Thiobacillus denitrificans ATCC 25259]
 gi|74055548|gb|AAZ95988.1| 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
           [Thiobacillus denitrificans ATCC 25259]
          Length = 107

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYVVT+ C+ CK+TDCV+VCPVDCF+EG NFLAI P+ECIDC +C  ECPV+AI    D
Sbjct: 1   MTYVVTDACVKCKYTDCVDVCPVDCFHEGPNFLAIDPEECIDCTLCVAECPVEAIYAEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E A  W  I  + + LP A +  GVK K +
Sbjct: 61  VPDDQRAYIALNAELAKAWKVIVERHDPLPDADEWAGVKDKIK 103


>gi|83749935|ref|ZP_00946892.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|83723395|gb|EAP70616.1| Ferredoxin [Ralstonia solanacearum UW551]
          Length = 145

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI    D
Sbjct: 28  MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAEAD 87

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKY-EKYFSPNPGGKN 112
                  ++ +N++ + +  WP +T  +  L   A+   VK K      +P PG + 
Sbjct: 88  VPADQREFIALNAQLSRRPDWPRLTQVQPPLADHARWAQVKDKRSTLLIAPEPGTQT 144


>gi|224588329|gb|ACN58953.1| ferredoxin [uncultured bacterium BLR10]
          Length = 107

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF +G NFLAI PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCISCRYTDCVDVCPVDCFRQGPNFLAIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++KIN + A  WP+IT     LP A +   VK+K     
Sbjct: 61  VPGDQQQFIKINVDLARNWPSITKTVSPLPEADQFKDVKEKLHLLV 106


>gi|33594451|ref|NP_882095.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33564526|emb|CAE43841.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|332383862|gb|AEE68709.1| ferredoxin [Bordetella pertussis CS]
          Length = 107

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E + ++P+I+  K+ L  A + +GV+ K +
Sbjct: 61  VPQDQVPFIALNVELSAEFPSISRAKKPLEDADQWNGVQDKLQ 103


>gi|170727750|ref|YP_001761776.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813097|gb|ACA87681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 107

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/106 (50%), Positives = 70/106 (66%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVT+NCI CK+TDCV VCPVD F+EG NFLAI+PD CIDC +C PEC   AI  +  
Sbjct: 1   MAFVVTDNCIRCKYTDCVAVCPVDAFHEGPNFLAINPDVCIDCELCVPECAAAAIFQEDA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
              G+E +L++N+E A  WP IT   ++   A + DGV+ K E   
Sbjct: 61  LPEGMEQYLELNAELAQIWPVITEVIDAPLDAEQWDGVEDKREHLI 106


>gi|89902899|ref|YP_525370.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89347636|gb|ABD71839.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 107

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 70/105 (66%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI CK+TDCV+VCPVD F EG NFLAI PDECIDC VC PECPV+AI    D
Sbjct: 1   MTFVVTESCISCKYTDCVDVCPVDAFREGPNFLAIDPDECIDCAVCVPECPVNAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++ +N+E A +W  IT  K +LP A K   V  K  + 
Sbjct: 61  VPADQQDFIALNAELAPKWKTITRTKAALPDADKWASVAAKRAEL 105


>gi|57238754|ref|YP_179890.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58578675|ref|YP_196887.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58616738|ref|YP_195937.1| ferredoxin [Ehrlichia ruminantium str. Gardel]
 gi|57160833|emb|CAH57731.1| ferredoxin [Ehrlichia ruminantium str. Welgevonden]
 gi|58416350|emb|CAI27463.1| Ferredoxin [Ehrlichia ruminantium str. Gardel]
 gi|58417301|emb|CAI26505.1| Ferredoxin [Ehrlichia ruminantium str. Welgevonden]
          Length = 125

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ +T+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI  D  
Sbjct: 1   MTHFITDRCIKCKYTDCVEVCPVDCFYEGPNMLVIDPDQCIDCGVCIPECPIDAIIADDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + + +IN E++ +W NIT++K  LP A      K K+  YF
Sbjct: 61  IKDILESDNNVLNDEQKSFKKFYEINREFSKKWENITSRKSPLPEAESYKYKKDKF-IYF 119

Query: 105 SPN 107
           + N
Sbjct: 120 NEN 122


>gi|53725758|ref|YP_102306.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|254199200|ref|ZP_04905566.1| ferredoxin [Burkholderia mallei FMH]
 gi|52429181|gb|AAU49774.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|147748796|gb|EDK55870.1| ferredoxin [Burkholderia mallei FMH]
          Length = 107

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1   MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + +  +N+E A  WP+IT  K +   A +   V++K    
Sbjct: 61  VPGDQQHFTALNAELAKDWPSITKTKPAPADANEWKDVQEKLHLL 105


>gi|221066142|ref|ZP_03542247.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|264679310|ref|YP_003279217.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|299533455|ref|ZP_07046836.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
 gi|220711165|gb|EED66533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|262209823|gb|ACY33921.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|298718561|gb|EFI59537.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
          Length = 109

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++K+N + +    W +IT +K SLP A + +G   K +  
Sbjct: 61  VPADQLAFIKLNVDLSQLKSWKSITKRKASLPDADEWNGKPNKVDLL 107


>gi|222102197|ref|YP_002546787.1| hypothetical protein Arad_12331 [Agrobacterium radiobacter K84]
 gi|221728314|gb|ACM31323.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 107

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTENCI CK  DCVE CPV+CF+EG NFL I+P ECIDCGVCEP CP +AI P  +
Sbjct: 1   MTFVVTENCIKCKFQDCVEACPVNCFHEGPNFLVINPSECIDCGVCEPVCPAEAIYPLEE 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  +  +NSE A +WP IT K      A+  DG + K 
Sbjct: 61  LPVEQAAFAALNSELAAEWPVITIKGPPPADASIWDGKRGKL 102


>gi|71278991|ref|YP_269613.1| ferredoxin, 4Fe-4S [Colwellia psychrerythraea 34H]
 gi|71144731|gb|AAZ25204.1| ferredoxin, 4Fe-4S [Colwellia psychrerythraea 34H]
          Length = 111

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCILCK+TDCV VCP D FYEG NFL I PD+CIDC +C  ECP  AI  + E
Sbjct: 1   MAFVVTDNCILCKYTDCVAVCPADAFYEGPNFLVISPDDCIDCDLCPVECPAGAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A  WP IT  K  L  A K DGV  K +
Sbjct: 61  VPADQQEFIELNAELAKHWPRITEVKPPLEQAEKWDGVADKIQ 103


>gi|226951441|ref|ZP_03821905.1| 7-Fe ferredoxin [Acinetobacter sp. ATCC 27244]
 gi|262373026|ref|ZP_06066305.1| ferredoxin [Acinetobacter junii SH205]
 gi|294650963|ref|ZP_06728304.1| ferredoxin 1 [Acinetobacter haemolyticus ATCC 19194]
 gi|226837808|gb|EEH70191.1| 7-Fe ferredoxin [Acinetobacter sp. ATCC 27244]
 gi|262313051|gb|EEY94136.1| ferredoxin [Acinetobacter junii SH205]
 gi|292823144|gb|EFF82006.1| ferredoxin 1 [Acinetobacter haemolyticus ATCC 19194]
          Length = 109

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 73/105 (69%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTENCI CK+ DCVEVCPVDCFYEG NFL I+PDECIDC +CEPECP +AI  + E
Sbjct: 1   MTFVVTENCIKCKYQDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPANAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWP--NITTKKESLPSAAKMDGVKQKYE 101
              G E+++++N+E + +W   NIT   E      + +G   K +
Sbjct: 61  LPEGQEVFIELNAELSEKWAGNNITQIGEQPADREEWNGKPNKLQ 105


>gi|187928049|ref|YP_001898536.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187724939|gb|ACD26104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
          Length = 109

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+C+ CK+TDCV+VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCVRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ-WPNITTKKESLPSAAKMDGVKQKYE 101
                + W+ IN E A   WP+IT  K+ LP A     VK K +
Sbjct: 61  VPADQQKWIAINVELAQAGWPSITKTKQPLPDADDWKDVKDKEQ 104


>gi|329910055|ref|ZP_08275214.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546280|gb|EGF31309.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 107

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE+CI C++TDCV+VCPVDCF EG NFL+I PDECIDC VC  ECPV+AI    D
Sbjct: 1   MTHVVTESCIQCRYTDCVDVCPVDCFREGPNFLSIDPDECIDCAVCVAECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + ++K+N + +  WP+IT  K +LP A +   ++ K    
Sbjct: 61  VPADQQQFIKLNIDLSRGWPSITKTKAALPEADEFKDMQAKLHLL 105


>gi|91983714|gb|ABE68863.1| FdxA [Pseudomonas sp. Q128-87]
          Length = 104

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 4   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 63

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 64  NFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 102


>gi|121605331|ref|YP_982660.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120594300|gb|ABM37739.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 109

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV++ CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVSDPCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEY--ATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++KIN++   A  W +IT +K++LP A +      K  +  
Sbjct: 61  LPSDQLHFIKINADLTSAPGWKSITKRKDALPDADEWKDKTNKLSELV 108


>gi|198283226|ref|YP_002219547.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668155|ref|YP_002425458.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247747|gb|ACH83340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520368|gb|ACK80954.1| ferredoxin [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 107

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +CEPECP  AI  D  
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCEPECPAGAIFRDDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G + + +IN+  A  WP I  KK +   A     VK K
Sbjct: 61  MPDGQKEFEEINARLAKIWPAIIQKKAAPEDADAWLHVKDK 101


>gi|317401942|gb|EFV82546.1| ferredoxin 1 [Achromobacter xylosoxidans C54]
          Length = 107

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E + ++ +I+  K+ LP A + +G + K +
Sbjct: 61  VPQDQLNFIALNAELSPEFASISRAKKPLPDADEWNGKQDKLQ 103


>gi|119468754|ref|ZP_01611806.1| putative ferredoxin [Alteromonadales bacterium TW-7]
 gi|119447810|gb|EAW29076.1| putative ferredoxin [Alteromonadales bacterium TW-7]
          Length = 107

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PECP +AI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECPAEAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP IT  K +   A   +GV+ K +  
Sbjct: 61  LPDSQKEFTELNAELALIWPRITQVKSAPDDADTWNGVENKLKLL 105


>gi|91789908|ref|YP_550860.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91699133|gb|ABE45962.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 109

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 52/102 (50%), Positives = 67/102 (65%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVT+ CI CK+TDCV+VCPVDCF EG +FL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVTDACIKCKYTDCVDVCPVDCFREGPDFLVIDPDECIDCAVCIPECPVNAIYADTD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           T    + +L++N   A  WP ++ +   LP+A +      K 
Sbjct: 61  TPGQFQPFLELNERLAKLWPTLSRRTAPLPTAEQWKDKTGKL 102


>gi|311104718|ref|YP_003977571.1| ferredoxin 2 [Achromobacter xylosoxidans A8]
 gi|310759407|gb|ADP14856.1| ferredoxin 2 [Achromobacter xylosoxidans A8]
          Length = 107

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 71/103 (68%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E + ++ +I+  K+ LP A + +G + K +
Sbjct: 61  VPQDQMNFIALNAELSPEFASISRAKKPLPDADEWNGKQDKLQ 103


>gi|300697403|ref|YP_003748064.1| Ferredoxin 1 [Ralstonia solanacearum CFBP2957]
 gi|299074127|emb|CBJ53671.1| Ferredoxin 1 [Ralstonia solanacearum CFBP2957]
          Length = 116

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 5/116 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAESD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF-SPNPGGK 111
                  ++ +N++ + +  WP +T  +  L   A+   VK K +    +P PG +
Sbjct: 61  VPADQREFIALNAQLSRRPDWPRLTQVQPPLADHARWAQVKDKRDTLLITPEPGTR 116


>gi|319762492|ref|YP_004126429.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|330825657|ref|YP_004388960.1| ferredoxin, C-terminal protein [Alicycliphilus denitrificans K601]
 gi|317117053|gb|ADU99541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|329311029|gb|AEB85444.1| Ferredoxin, C-terminal protein [Alicycliphilus denitrificans K601]
          Length = 107

 Score =  139 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVVENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++KIN+E   ++ +IT +K +LP A + +G   K +  
Sbjct: 61  LPSDQLAFIKINAELTPKFKSITKRKAALPDADEWNGTPGKLKDL 105


>gi|293603978|ref|ZP_06686391.1| O-succinylhomoserine sulfhydrylase [Achromobacter piechaudii ATCC
           43553]
 gi|292817582|gb|EFF76650.1| O-succinylhomoserine sulfhydrylase [Achromobacter piechaudii ATCC
           43553]
          Length = 107

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N+E + ++ +I+  K+ LP A   +G + K +
Sbjct: 61  VPQDQLNFIALNAELSPEFASISRAKKPLPDADDWNGKQDKLQ 103


>gi|163856039|ref|YP_001630337.1| ferredoxin 1 (FdI) [Bordetella petrii DSM 12804]
 gi|163259767|emb|CAP42068.1| Ferredoxin 1 (FdI) [Bordetella petrii]
          Length = 107

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 69/105 (65%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E   ++  I+  K+ LP A + +GV  K +  
Sbjct: 61  VPQDQVQFIALNAELTPEFAPISRAKKPLPDADEWNGVPDKLQHL 105


>gi|224826355|ref|ZP_03699457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
           nitroferrum 2002]
 gi|224601456|gb|EEG07637.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
           nitroferrum 2002]
          Length = 107

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M YVVTE CI CK+TDCV+VCPVDCF+EG NFLAI PDECIDC +C  ECPV+AI    D
Sbjct: 1   MAYVVTEACIKCKYTDCVDVCPVDCFHEGPNFLAIDPDECIDCTLCVAECPVEAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  +++IN   +  WP I  KK+ LP       V  K +
Sbjct: 61  VPADQLHFIEINDRLSKVWPVIAAKKDPLPDHEDWAKVTGKTQ 103


>gi|34497002|ref|NP_901217.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34102859|gb|AAQ59223.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
          Length = 112

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MTYVV  +CI CKH+DCV+VCP D F+EG N LAI+PD+CIDCG+C PECP+DAI+ D  
Sbjct: 1   MTYVVLSDCIGCKHSDCVDVCPTDSFHEGPNMLAINPDDCIDCGLCVPECPIDAIREDKA 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                   + +N+E A +WPNIT  K +LP A    G   K +
Sbjct: 61  VPSHEHGMIALNAELAQRWPNITKSKPALPEAEAWRGRPDKLQ 103


>gi|332186983|ref|ZP_08388724.1| 4Fe-4S binding domain protein [Sphingomonas sp. S17]
 gi|332012993|gb|EGI55057.1| 4Fe-4S binding domain protein [Sphingomonas sp. S17]
          Length = 99

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/99 (63%), Positives = 77/99 (77%), Gaps = 1/99 (1%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
            DCVEVCPVDCFYEGEN L I+P ECIDCGVCEPECP +AI PDTE GLE WL++N+ ++
Sbjct: 1   MDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTESGLEQWLELNTTFS 60

Query: 75  TQWPNITTKKE-SLPSAAKMDGVKQKYEKYFSPNPGGKN 112
            QWPN+T K + + P A  M GV+ KYE++FSP PG  +
Sbjct: 61  AQWPNVTRKLDQTPPDADAMKGVENKYEQFFSPEPGKGD 99


>gi|190571735|ref|YP_001976093.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019223|ref|ZP_03335030.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190358007|emb|CAQ55475.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995332|gb|EEB55973.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 125

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/126 (51%), Positives = 78/126 (61%), Gaps = 17/126 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+SL +A +    K K   YF
Sbjct: 61  IKDILELDEGLLNNEQKIFKSFYNINVEYSQKWPNITAKKQSLDTAEEYKEKKDK-TAYF 119

Query: 105 SPNPGG 110
             N G 
Sbjct: 120 DENLGS 125


>gi|91983684|gb|ABE68848.1| FdxA [Pseudomonas sp. CM1A2]
          Length = 103

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 3   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 62

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 63  NFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 101


>gi|332529166|ref|ZP_08405130.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
 gi|332041389|gb|EGI77751.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
          Length = 109

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVTEACIRCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G    +K+N+E A    W +IT +K +LP A +      K  + 
Sbjct: 61  VPSGQMHMIKLNAELARAPGWKSITKRKAALPDAEEWKDKTGKLSEL 107


>gi|91983698|gb|ABE68855.1| FdxA [Pseudomonas sp. P97.30]
 gi|91983700|gb|ABE68856.1| FdxA [Pseudomonas sp. K94.31]
          Length = 101

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  NFIELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 99


>gi|53719819|ref|YP_108805.1| ferredoxin I [Burkholderia pseudomallei K96243]
 gi|53724135|ref|YP_103250.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76809614|ref|YP_334029.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121598984|ref|YP_993430.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124386308|ref|YP_001029137.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|134277295|ref|ZP_01764010.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|167824830|ref|ZP_02456301.1| ferredoxin [Burkholderia pseudomallei 9]
 gi|226198916|ref|ZP_03794479.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|238562467|ref|ZP_00440400.2| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|251766955|ref|ZP_02265481.2| ferredoxin [Burkholderia mallei PRL-20]
 gi|254178196|ref|ZP_04884851.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|254191489|ref|ZP_04897993.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|254198288|ref|ZP_04904710.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|254200199|ref|ZP_04906565.1| ferredoxin [Burkholderia mallei FMH]
 gi|254209279|ref|ZP_04915625.1| ferredoxin [Burkholderia mallei JHU]
 gi|254259347|ref|ZP_04950401.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|254297156|ref|ZP_04964609.1| putative ferredoxin [Burkholderia pseudomallei 406e]
 gi|254358050|ref|ZP_04974323.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|262193288|ref|YP_001080939.2| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|52210233|emb|CAH36212.1| ferredoxin I [Burkholderia pseudomallei K96243]
 gi|52427558|gb|AAU48151.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76579067|gb|ABA48542.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121227794|gb|ABM50312.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124294328|gb|ABN03597.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|134250945|gb|EBA51024.1| putative ferredoxin [Burkholderia pseudomallei 305]
 gi|147749795|gb|EDK56869.1| ferredoxin [Burkholderia mallei FMH]
 gi|147750052|gb|EDK57123.1| ferredoxin [Burkholderia mallei JHU]
 gi|148027177|gb|EDK85198.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|157807005|gb|EDO84175.1| putative ferredoxin [Burkholderia pseudomallei 406e]
 gi|157939161|gb|EDO94831.1| putative ferredoxin [Burkholderia pseudomallei Pasteur 52237]
 gi|160699235|gb|EDP89205.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|169655029|gb|EDS87722.1| putative ferredoxin [Burkholderia pseudomallei S13]
 gi|225929016|gb|EEH25040.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|238522582|gb|EEP86025.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|243064296|gb|EES46482.1| ferredoxin [Burkholderia mallei PRL-20]
 gi|254218036|gb|EET07420.1| putative ferredoxin [Burkholderia pseudomallei 1710a]
 gi|261835063|gb|ABO05671.2| ferredoxin [Burkholderia mallei NCTC 10247]
          Length = 112

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|187926655|ref|YP_001893000.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|241666167|ref|YP_002984526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
 gi|187728409|gb|ACD29573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|240868194|gb|ACS65854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 112

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI P  +
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICVPECPVGAIYPAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N++ + +  WP +T  +  LP  A    VK K +   
Sbjct: 61  VPADQQDFIALNAQLSRRADWPRLTKVQPPLPDHAHWAQVKDKRDALV 108


>gi|319943296|ref|ZP_08017579.1| ferredoxin [Lautropia mirabilis ATCC 51599]
 gi|319743838|gb|EFV96242.1| ferredoxin [Lautropia mirabilis ATCC 51599]
          Length = 107

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 65/103 (63%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M ++V +NCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI  + D
Sbjct: 1   MAHIVLDNCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCVPECPAEAIVAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E ++ IN+E A  WP IT  K  L  A   +G   K +
Sbjct: 61  VPGDQENFIAINAEKAPNWPAITRSKSPLEDADDWNGTPNKLQ 103


>gi|323496163|ref|ZP_08101221.1| ferredoxin [Vibrio sinaloensis DSM 21326]
 gi|323318440|gb|EGA71393.1| ferredoxin [Vibrio sinaloensis DSM 21326]
          Length = 107

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  VPADQKIYIELNAELAEHWPVQTEVKPAMDEAEKWNGVADKL 102


>gi|241767844|ref|ZP_04765425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241361074|gb|EER57771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 109

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 71/107 (66%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+ENCI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVSENCIKCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++K+N++  +A  W +IT +K +LP A + +G   K +  
Sbjct: 61  LPADQIAFIKLNADLAFADGWKSITKRKPALPDADEWNGQPGKVKDL 107


>gi|126454614|ref|YP_001066809.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|167911570|ref|ZP_02498661.1| putative ferredoxin [Burkholderia pseudomallei 112]
 gi|167919580|ref|ZP_02506671.1| putative ferredoxin [Burkholderia pseudomallei BCC215]
 gi|242317545|ref|ZP_04816561.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
 gi|126228256|gb|ABN91796.1| putative ferredoxin [Burkholderia pseudomallei 1106a]
 gi|242140784|gb|EES27186.1| putative ferredoxin [Burkholderia pseudomallei 1106b]
          Length = 112

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRHFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|148284852|ref|YP_001248942.1| ferredoxin [Orientia tsutsugamushi str. Boryong]
 gi|146740291|emb|CAM80671.1| Ferredoxin [Orientia tsutsugamushi str. Boryong]
          Length = 106

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 74/103 (71%), Gaps = 1/103 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT++C+ CK+TDCVEVCPVDCF+EGE  + I P++CIDCGVCE ECPV AIKP+ E
Sbjct: 1   MTYVVTDSCVKCKYTDCVEVCPVDCFHEGEMMVVIDPEKCIDCGVCEAECPVGAIKPEAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             L  W+++  E++ +WP I  KK  LP A        K+EKY
Sbjct: 61  -ELIKWIELGQEFSKKWPQILHKKAPLPQADLYKDKTNKFEKY 102


>gi|260221336|emb|CBA29796.1| Ferredoxin-1 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 109

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT++VTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHIVTEACIKCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPANAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                +  + +N+E A    W +IT +K  LP A        K  +  
Sbjct: 61  APKDQQHMIALNAELARLPGWKSITKRKAPLPDADDWKDKTGKLSQLI 108


>gi|323494050|ref|ZP_08099166.1| ferredoxin [Vibrio brasiliensis LMG 20546]
 gi|323311677|gb|EGA64825.1| ferredoxin [Vibrio brasiliensis LMG 20546]
          Length = 107

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 +++++N+E A  WP  T  K ++  A K +GV  K +  
Sbjct: 61  VPDDQTIYIQLNAELAELWPVQTEVKPAMDEAEKWNGVPNKLDML 105


>gi|254505412|ref|ZP_05117559.1| ferredoxin [Vibrio parahaemolyticus 16]
 gi|219551529|gb|EED28507.1| ferredoxin [Vibrio parahaemolyticus 16]
          Length = 107

 Score =  137 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECDAHAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  VPEDQKIYVELNAELAELWPVQTEVKPAMDEAEKWNGVPDKL 102


>gi|91983676|gb|ABE68844.1| FdxA [Pseudomonas sp. Q2-87]
          Length = 104

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 73/99 (73%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 4   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 63

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 64  NFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 102


>gi|187729714|ref|YP_001837303.1| ferredoxin-like protein [Acidithiobacillus caldus]
 gi|167782099|gb|ACA00170.1| ferredoxin-like protein [Acidithiobacillus caldus]
          Length = 107

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NC+ CK+ DCV+VCPVDCF+EG+NFL I P  CIDCGVCEPECP  AI  D++
Sbjct: 1   MTYVVTDNCVNCKYMDCVDVCPVDCFHEGKNFLVIDPSVCIDCGVCEPECPASAIYKDSD 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              E   +L IN + ++ WP I  KK+ LP A K DG+  K
Sbjct: 61  LPDEFVAYLDINKKLSSSWPLIKYKKDELPEAHKWDGIPNK 101


>gi|91983692|gb|ABE68852.1| FdxA [Pseudomonas sp. F96.27]
 gi|91983702|gb|ABE68857.1| FdxA [Pseudomonas sp. P97.38]
          Length = 101

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGQE 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  NFIELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 99


>gi|189184160|ref|YP_001937945.1| ferredoxin [Orientia tsutsugamushi str. Ikeda]
 gi|189180931|dbj|BAG40711.1| ferredoxin [Orientia tsutsugamushi str. Ikeda]
          Length = 106

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 74/103 (71%), Gaps = 1/103 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT++C+ CK+TDCVEVCPVDCF+EGE  + I P++CIDCGVCE ECPV AIKP+ E
Sbjct: 1   MTYVVTDSCVKCKYTDCVEVCPVDCFHEGEMMVVIDPEKCIDCGVCEAECPVGAIKPEAE 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             L  W+++  E++ +WP I  KK  LP A        K+EKY
Sbjct: 61  -ELIKWIELGQEFSKKWPQILHKKAPLPQADLYKDETNKFEKY 102


>gi|315123428|ref|YP_004065434.1| putative ferredoxin [Pseudoalteromonas sp. SM9913]
 gi|315017188|gb|ADT70525.1| putative ferredoxin [Pseudoalteromonas sp. SM9913]
          Length = 107

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECAADAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP IT  K +   A   +GV  K +  
Sbjct: 61  LPESQKEFTQLNAELAEIWPRITQVKPAPEDADSWNGVANKLKLL 105


>gi|91983694|gb|ABE68853.1| FdxA [Pseudomonas sp. K94.37]
          Length = 101

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 74/99 (74%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGME 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++++N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  NFIELNAELAEIWPNITEKKDALPDAEEWDGKEGKIADL 99


>gi|58584826|ref|YP_198399.1| ferredoxin [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419142|gb|AAW71157.1| Ferredoxin [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 124

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/123 (52%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+ L +A K    K K   YF
Sbjct: 61  IKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDK-TAYF 119

Query: 105 SPN 107
           + N
Sbjct: 120 NEN 122


>gi|126441756|ref|YP_001059528.1| putative ferredoxin [Burkholderia pseudomallei 668]
 gi|217425596|ref|ZP_03457088.1| putative ferredoxin [Burkholderia pseudomallei 576]
 gi|254184452|ref|ZP_04891042.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|126221249|gb|ABN84755.1| putative ferredoxin [Burkholderia pseudomallei 668]
 gi|184214983|gb|EDU12026.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|217391373|gb|EEC31403.1| putative ferredoxin [Burkholderia pseudomallei 576]
          Length = 112

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 56/107 (52%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|42520002|ref|NP_965917.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99035924|ref|ZP_01314971.1| hypothetical protein Wendoof_01000179 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409739|gb|AAS13851.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 124

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/123 (52%), Positives = 77/123 (62%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   +L+  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  IKDILELDEELLSSEQKTFKLFYDINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|77362322|ref|YP_341896.1| putative ferredoxin [Pseudoalteromonas haloplanktis TAC125]
 gi|76877233|emb|CAI89450.1| putative ferredoxin [Pseudoalteromonas haloplanktis TAC125]
          Length = 107

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECSADAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + + ++N+E A  WP IT  K +   A + +G+  K +
Sbjct: 61  LPESQQEFTELNAELALIWPRITQAKPAPADADEWNGIADKLK 103


>gi|84385231|ref|ZP_00988263.1| ferredoxin [Vibrio splendidus 12B01]
 gi|84379828|gb|EAP96679.1| ferredoxin [Vibrio splendidus 12B01]
          Length = 107

 Score =  137 bits (345), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV +NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVGDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K  +  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKAPMDEAEKWNGVSDKL 102


>gi|332284971|ref|YP_004416882.1| ferredoxin [Pusillimonas sp. T7-7]
 gi|330428924|gb|AEC20258.1| ferredoxin [Pusillimonas sp. T7-7]
          Length = 107

 Score =  137 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVTENCI CK TDCV+VCPVDCF EG NFL I PDECIDC VC PECP +AI    D
Sbjct: 1   MTHVVTENCIKCKFTDCVDVCPVDCFREGANFLVIDPDECIDCAVCVPECPANAIFAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++++N+E   ++  I   K+ LP A   +G+  K +  
Sbjct: 61  VPQDQISFIELNAELTPEFGMINRSKKPLPEADDWNGMPDKLKHL 105


>gi|148973892|ref|ZP_01811425.1| ferredoxin [Vibrionales bacterium SWAT-3]
 gi|145965589|gb|EDK30837.1| ferredoxin [Vibrionales bacterium SWAT-3]
          Length = 107

 Score =  136 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV +NCI CK+TD V VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  + E
Sbjct: 1   MAFVVGDNCIQCKYTDFVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K ++  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKPAMDDAEKWNGVPDKL 102


>gi|237812865|ref|YP_002897316.1| ferredoxin-1 [Burkholderia pseudomallei MSHR346]
 gi|237506519|gb|ACQ98837.1| ferredoxin-1 [Burkholderia pseudomallei MSHR346]
          Length = 112

 Score =  136 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   +
Sbjct: 1   MTFVVMEGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
                  ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 61  LPDDQRPFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 107


>gi|58698109|ref|ZP_00373032.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630003|ref|YP_002726794.1| ferredoxin, 4Fe-4S [Wolbachia sp. wRi]
 gi|58535355|gb|EAL59431.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225591984|gb|ACN95003.1| ferredoxin, 4Fe-4S [Wolbachia sp. wRi]
          Length = 124

 Score =  136 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/123 (51%), Positives = 76/123 (61%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  VKDILELDEELLSSEQKTFKSFYNINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|86145740|ref|ZP_01064069.1| ferredoxin [Vibrio sp. MED222]
 gi|218676912|ref|YP_002395731.1| Ferredoxin [Vibrio splendidus LGP32]
 gi|85836439|gb|EAQ54568.1| ferredoxin [Vibrio sp. MED222]
 gi|218325180|emb|CAV27087.1| Ferredoxin [Vibrio splendidus LGP32]
          Length = 107

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 64/102 (62%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VV +NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C PEC   AI  +  
Sbjct: 1   MAFVVGDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVPECDAQAIFQEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                ++++++N+E A  WP  T  K  +  A K +GV  K 
Sbjct: 61  LPEDQKIFIEVNAELAEIWPVQTEVKAPMDEAEKWNGVADKL 102


>gi|117573304|gb|ABK40828.1| ferredoxin [Pseudomonas sp. C6-16]
 gi|117573310|gb|ABK40831.1| ferredoxin [Pseudomonas sp. C6-9]
 gi|117573314|gb|ABK40833.1| ferredoxin [Pseudomonas sp. S7-29]
 gi|117573316|gb|ABK40834.1| ferredoxin [Pseudomonas sp. S7-42]
 gi|117573318|gb|ABK40835.1| ferredoxin [Pseudomonas sp. S7-46]
 gi|117573320|gb|ABK40836.1| ferredoxin [Pseudomonas sp. S7-52]
 gi|117573326|gb|ABK40839.1| ferredoxin [Pseudomonas sp. S8-151]
 gi|117573328|gb|ABK40840.1| ferredoxin [Pseudomonas sp. C6-11]
          Length = 99

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 73/97 (75%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG + K +  
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKEGKLKDL 97


>gi|167627085|ref|YP_001677585.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|241667647|ref|ZP_04755225.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876192|ref|ZP_05248902.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|167597086|gb|ABZ87084.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254842213|gb|EET20627.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 107

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTENCI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPVDAIK   D
Sbjct: 1   MPFVVTENCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVDAIKSSDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E  L +N E A+ WPNI  K +    A     V  K +
Sbjct: 61  LTESQEQMLDLNRELASIWPNIVEKCDPCEDADNWASVPDKLK 103


>gi|332992178|gb|AEF02233.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Alteromonas sp.
           SN2]
          Length = 108

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/102 (54%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+VVT+NCI CK+TDCV VCPVD F+EG NFLAI P  CIDC +C PECP DAI  DT 
Sbjct: 1   MTFVVTDNCINCKYTDCVAVCPVDAFFEGPNFLAIDPAICIDCALCVPECPADAIVQDTH 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                + +L IN E A +WPNI   K     A   +GV  K 
Sbjct: 61  LTDAQKPYLAINEELAAKWPNIIELKAPPEDADVWNGVPDKL 102


>gi|319793283|ref|YP_004154923.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315595746|gb|ADU36812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 109

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/108 (50%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+E CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVSEACIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++KIN+E   A  W +IT +K +LP A +      K  +  
Sbjct: 61  LPANQIAFIKINAELALADGWKSITKRKPALPDAEEWKDKTDKVGELV 108


>gi|91199775|emb|CAI78130.1| putative ferredoxin [Streptomyces ambofaciens ATCC 23877]
 gi|126347479|emb|CAJ89187.1| putative ferredoxin [Streptomyces ambofaciens ATCC 23877]
          Length = 118

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 3/110 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE- 60
           TYVV E CI C+ TDCV+VCPVDCF+ GEN L IHP ECIDCG C PECPV AI  ++E 
Sbjct: 9   TYVVAEPCIRCRTTDCVDVCPVDCFHAGENMLVIHPYECIDCGACVPECPVSAIFEESEL 68

Query: 61  -PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                 + ++N EYA +WP IT+K ++         V+ K +++F+P PG
Sbjct: 69  PAKWGEYTELNLEYADKWPVITSKADAPSDWENWRDVEPK-KQHFNPAPG 117


>gi|239815386|ref|YP_002944296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239801963|gb|ACS19030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 109

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VV+E CI CK+TDCV+VCPVDCF EG N L I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHVVSEACIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEY--ATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++K+N+E   A  W +IT +K +LP A +      K  +  
Sbjct: 61  LPANQIAFIKLNAELAVADGWKSITKRKPALPDAEEWKDKTDKVGELV 108


>gi|27367705|ref|NP_763232.1| ferredoxin [Vibrio vulnificus CMCP6]
 gi|37675831|ref|NP_936227.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|320157989|ref|YP_004190367.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Vibrio vulnificus
           MO6-24/O]
 gi|27359277|gb|AAO08222.1|AE016812_204 Ferredoxin [Vibrio vulnificus CMCP6]
 gi|37200370|dbj|BAC96197.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|319933301|gb|ADV88164.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Vibrio vulnificus
           MO6-24/O]
          Length = 107

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +  
Sbjct: 61  LPEDQVIYKELNAELAELWPVQTEVKPAMDEAEKWNGVPNKLDML 105


>gi|268317837|ref|YP_003291556.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodothermus marinus DSM 4252]
 gi|262335371|gb|ACY49168.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodothermus
           marinus DSM 4252]
          Length = 118

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 68/108 (62%), Gaps = 7/108 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVD FYEG NFLAIHPDECIDC  C P CP +AI PD E
Sbjct: 1   MPYVVCEPCINCKYTDCVEVCPVDAFYEGPNFLAIHPDECIDCNACVPVCPTEAIYPDDE 60

Query: 61  --PGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVKQKYEK 102
                + +++ N   A QW     NIT KKE LP A +      K EK
Sbjct: 61  VPEEWQHYIEWNRYLAEQWKAQGFNITQKKEPLPEAEEWRNRP-KSEK 107


>gi|28897729|ref|NP_797334.1| ferredoxin [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838666|ref|ZP_01991333.1| ferredoxin-1 [Vibrio parahaemolyticus AQ3810]
 gi|260363840|ref|ZP_05776595.1| ferredoxin-1 [Vibrio parahaemolyticus K5030]
 gi|260876900|ref|ZP_05889255.1| ferredoxin-1 [Vibrio parahaemolyticus AN-5034]
 gi|260897958|ref|ZP_05906454.1| ferredoxin-1 [Vibrio parahaemolyticus Peru-466]
 gi|260902160|ref|ZP_05910555.1| ferredoxin-1 [Vibrio parahaemolyticus AQ4037]
 gi|28805942|dbj|BAC59218.1| ferredoxin [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747944|gb|EDM58810.1| ferredoxin-1 [Vibrio parahaemolyticus AQ3810]
 gi|308085488|gb|EFO35183.1| ferredoxin-1 [Vibrio parahaemolyticus Peru-466]
 gi|308093644|gb|EFO43339.1| ferredoxin-1 [Vibrio parahaemolyticus AN-5034]
 gi|308108295|gb|EFO45835.1| ferredoxin-1 [Vibrio parahaemolyticus AQ4037]
 gi|308113880|gb|EFO51420.1| ferredoxin-1 [Vibrio parahaemolyticus K5030]
          Length = 107

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +  
Sbjct: 61  LPEDQTIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLDML 105


>gi|268318191|ref|YP_003291910.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodothermus marinus DSM 4252]
 gi|21389190|gb|AAM50525.1|AF515798_1 ferredoxin [Rhodothermus marinus]
 gi|262335725|gb|ACY49522.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodothermus
           marinus DSM 4252]
          Length = 118

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 66/103 (64%), Gaps = 6/103 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAIHPDECIDC  C P CPV+AI PD E
Sbjct: 1   MPYVVCEPCINCKYTDCVEVCPVDCFYEGPNFLAIHPDECIDCNACVPTCPVEAIYPDDE 60

Query: 61  --PGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVK 97
                + +++ N   A QW     NIT KK  LP A +     
Sbjct: 61  VPEEWQHYIEWNRYLAEQWKAMGYNITEKKGPLPDAEEWRNRP 103


>gi|299069168|emb|CBJ40421.1| Ferredoxin 1 [Ralstonia solanacearum CMR15]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVT++CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTQSCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ + +  WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|57339928|gb|AAW49951.1| hypothetical protein FTT1764 [synthetic construct]
          Length = 142

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTE+CI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPV+AIK   D
Sbjct: 27  MPFVVTESCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVNAIKSSDD 86

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E  L +N E A  WPNI  K E    A     V  K  KY    P
Sbjct: 87  LSENEEQMLDLNRELAGIWPNIVEKCEPCEDADNWASVPDKL-KYLEKYP 135


>gi|300693746|ref|YP_003749719.1| ferredoxin 1 [Ralstonia solanacearum PSI07]
 gi|299075783|emb|CBJ35088.1| Ferredoxin 1 [Ralstonia solanacearum PSI07]
          Length = 112

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ + +  WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|117573312|gb|ABK40832.1| ferredoxin [Pseudomonas sp. P97.39]
 gi|117573330|gb|ABK40841.1| ferredoxin [Pseudomonas sp. F96.26]
 gi|117573336|gb|ABK40844.1| ferredoxin [Pseudomonas sp. P97.1]
 gi|117573338|gb|ABK40845.1| ferredoxin [Pseudomonas sp. P97.27]
          Length = 99

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGQENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 97


>gi|91983690|gb|ABE68851.1| FdxA [Pseudomonas sp. P12]
          Length = 101

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLE 64
           +NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E
Sbjct: 1   DNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGME 60

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  NFIVLNAELAEIWPNITEKKDALPDAEEWDGKEGKIADL 99


>gi|328473289|gb|EGF44137.1| ferredoxin [Vibrio parahaemolyticus 10329]
          Length = 107

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +  
Sbjct: 61  LPEDQIIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLDML 105


>gi|117573306|gb|ABK40829.1| ferredoxin [Pseudomonas sp. C6-23]
 gi|117573308|gb|ABK40830.1| ferredoxin [Pseudomonas sp. C6-2]
          Length = 99

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E    ++ +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPEEMQEF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N E A  WPNIT KK+ LP A + DGVK K +  
Sbjct: 61  IQLNVELAEIWPNITEKKDPLPDAEEWDGVKGKIKDL 97


>gi|56478031|ref|YP_159620.1| ferredoxin [Aromatoleum aromaticum EbN1]
 gi|56314074|emb|CAI08719.1| ferredoxin [Aromatoleum aromaticum EbN1]
          Length = 107

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/103 (50%), Positives = 61/103 (59%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE CI CKHTDCV+VCP D F EG NFL I P+ECIDC +C  ECPVDAI  D  
Sbjct: 1   MTYVVTEACIKCKHTDCVDVCPTDAFREGPNFLVIDPEECIDCTLCVAECPVDAIYADDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++ +N E A +W  I   K +   A     VK K +
Sbjct: 61  VPDDQRQFIALNEELAKEWKPIVEVKPAPEDAGMWATVKDKLK 103


>gi|17549028|ref|NP_522368.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17431279|emb|CAD17958.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 112

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PD CIDC +C PECPV AI  + D
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDTCIDCSICAPECPVGAIHAEAD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ +N++ + +  WP +T  +  L   A+   VK K +   
Sbjct: 61  VPADQREFIALNAQLSRRADWPRLTQVQPPLADHARWAQVKDKRDALI 108


>gi|153834717|ref|ZP_01987384.1| ferredoxin-1 [Vibrio harveyi HY01]
 gi|156973800|ref|YP_001444707.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148868856|gb|EDL67920.1| ferredoxin-1 [Vibrio harveyi HY01]
 gi|156525394|gb|ABU70480.1| hypothetical protein VIBHAR_01510 [Vibrio harveyi ATCC BAA-1116]
          Length = 107

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++ ++N+E A  WP  T  K ++  A K +GV  K +  
Sbjct: 61  LPEDQVIYKELNAELAEIWPVQTEVKPAMDEAEKWNGVPNKLDML 105


>gi|89901238|ref|YP_523709.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89345975|gb|ABD70178.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 109

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/108 (51%), Positives = 65/108 (60%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+ VTE CI CK+TDCV+VCPVDCF EG NFL I PDECIDC VC PECPV+AI    D
Sbjct: 1   MTHTVTEACIKCKYTDCVDVCPVDCFREGPNFLTIDPDECIDCAVCIPECPVNAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                +   KIN+E A    W  IT +K +LP A +      K     
Sbjct: 61  VPKDQQHMTKINAELAKLPGWKTITKRKPALPEAEEWKDKTGKLPYLI 108


>gi|170726752|ref|YP_001760778.1| molydopterin dinucleotide-binding region [Shewanella woodyi ATCC
          51908]
 gi|169812099|gb|ACA86683.1| molydopterin dinucleotide-binding region [Shewanella woodyi ATCC
          51908]
          Length = 1299

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          M YVVT  CI  KHT CV+VCPV+ F EGE  L I PDECI C  C  ECP  AI P+  
Sbjct: 1  MAYVVTGACIGDKHTSCVDVCPVNAFREGEEMLYIDPDECISCNACLTECPSLAIFPEAS 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLP 88
                 ++ IN+  + + P IT +    P
Sbjct: 61 VPEDQLQYININAIESKKHPVITERINKQP 90


>gi|163839921|ref|YP_001624327.1| N-succinyldiaminopimelate aminotransferase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953397|gb|ABY22912.1| ferredoxin [Renibacterium salmoninarum ATCC 33209]
          Length = 539

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 42  TYVIAQPCVDIKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDDV 101

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                 + K N E+  +         S   AAK+ G       Y S  P
Sbjct: 102 PEEWADYYKANVEFFNE-------IGSPGGAAKV-GSTGTDHPYISALP 142


>gi|163803681|ref|ZP_02197543.1| ferredoxin [Vibrio sp. AND4]
 gi|159172520|gb|EDP57383.1| ferredoxin [Vibrio sp. AND4]
          Length = 107

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1   MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 L+ ++N+E A  WP  T  K ++  A K +GV  K +  
Sbjct: 61  LPDDQVLYKELNAELAEIWPVQTEIKPAMDEAEKWNGVPNKLDML 105


>gi|91983696|gb|ABE68854.1| FdxA [Pseudomonas sp. K93.2]
 gi|117573334|gb|ABK40843.1| ferredoxin [Pseudomonas sp. K94.38]
          Length = 99

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  IELNAELAEIWPNITEKKDALPDAEEWDGKEGKIADL 97


>gi|117573340|gb|ABK40846.1| ferredoxin [Pseudomonas sp. Q86-87]
          Length = 99

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKPGKIADL 97


>gi|192359344|ref|YP_001982818.1| 7-Fe ferredoxin [Cellvibrio japonicus Ueda107]
 gi|190685509|gb|ACE83187.1| 7-Fe ferredoxin [Cellvibrio japonicus Ueda107]
          Length = 107

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV ENCI CKHTDCVEVCPVDCFYEG NFL I+PDECIDC +CEPECPV AI  + E
Sbjct: 1   MTFVVGENCIKCKHTDCVEVCPVDCFYEGPNFLVINPDECIDCALCEPECPVSAIFSEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                 ++L++N+E +  WPNIT  K++   AA  DGV  K +  
Sbjct: 61  LPEDQAVFLELNAELSQVWPNITEIKDAPADAADWDGVPGKLQHL 105


>gi|194288740|ref|YP_002004647.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193222575|emb|CAQ68578.1| putative FERREDOXIN [Cupriavidus taiwanensis LMG 19424]
          Length = 109

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 4/104 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI    D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKY 100
                  +L +N+E + +  W  +T  K  LP   +  G   + 
Sbjct: 61  LPEDQRHFLALNAELSRRPDWLPLTQAKGPLPDHEQWAGHPDRL 104


>gi|134095508|ref|YP_001100583.1| ferredoxin [Herminiimonas arsenicoxydans]
 gi|133739411|emb|CAL62461.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 116

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/108 (48%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VVTE CI CK+TDCV VCP+DCF EG NFL I+PDECIDC +C  ECPV AI  D E
Sbjct: 1   MTFVVTEPCIQCKYTDCVTVCPMDCFMEGPNFLVINPDECIDCSMCVAECPVGAIVGDRE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  +L++N   +    W  IT  K +LP   K      K     
Sbjct: 61  LAADQAHFLELNRSLSAHPDWQRITMSKPALPEHEKWARTTTKLSLLL 108


>gi|119474975|ref|ZP_01615328.1| ferredoxin, 4Fe-4S [marine gamma proteobacterium HTCC2143]
 gi|119451178|gb|EAW32411.1| ferredoxin, 4Fe-4S [marine gamma proteobacterium HTCC2143]
          Length = 112

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/106 (49%), Positives = 66/106 (62%), Gaps = 2/106 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTE CI CK TDCV+VCPVDCF+EG NFL I+PD CIDC +C PECPVDAI    D
Sbjct: 1   MTFVVTEQCIKCKFTDCVDVCPVDCFHEGPNFLVINPDGCIDCALCIPECPVDAIYEESD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++KIN++ + +WP I   ++ L  A        K     
Sbjct: 61  LPDEFQEYIKINADLSARWPEILATQDPLEDAEDWADKPDKRGALI 106


>gi|332532550|ref|ZP_08408427.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037971|gb|EGI74419.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 107

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VVTENCI CK+TDCV VCP D F+EG NFLAI P +CIDCG+C PEC  DAI  + E
Sbjct: 1   MAFVVTENCIKCKYTDCVSVCPADAFFEGPNFLAISPIDCIDCGLCVPECSADAIYQEDE 60

Query: 61  --PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                + + ++N+E A  WP IT  K +   A   +G+  K +  
Sbjct: 61  LPESQKEFTELNAELALVWPRITEVKPAPEDADVWNGIDDKLKLL 105


>gi|309782798|ref|ZP_07677519.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
 gi|308918576|gb|EFP64252.1| ferredoxin, 4Fe-4S [Ralstonia sp. 5_7_47FAA]
          Length = 112

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M YVVTE+CI CK+TDCV VCP+DCF+ G NFL I PDECIDC +C PECPV AI P  +
Sbjct: 1   MPYVVTESCIQCKYTDCVAVCPMDCFHAGPNFLVIDPDECIDCSICVPECPVGAIYPAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                + ++ +N++ + +  WP +T  +  L   A    VK K +   
Sbjct: 61  VPADQQDFIALNAQLSRRADWPRLTKVQAPLQDHAHWAQVKDKRDALV 108


>gi|49080100|gb|AAT49971.1| PA2715 [synthetic construct]
          Length = 113

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI+ + E
Sbjct: 1   MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N E A    W  IT KK +        G+  K  + 
Sbjct: 61  VPLGQRQFIALNGELAAHPNWTQITRKKPAPDDHDAWFGLPGKLAEL 107


>gi|134094844|ref|YP_001099919.1| ferredoxin [Herminiimonas arsenicoxydans]
 gi|133738747|emb|CAL61794.1| Ferredoxin 1 [Herminiimonas arsenicoxydans]
          Length = 109

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVTE+CI CK+TDCV VCP+DCF+EG NFLAI+PDECIDC VC PECPV+AI    +
Sbjct: 1   MPFVVTESCIQCKYTDCVAVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGAAE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             P  + ++++N   +    W  I  +KE LP  AK   +K K     
Sbjct: 61  ISPEQQHFVELNRTLSRHPDWKRIRQQKEPLPEHAKWAELKDKLPLLL 108


>gi|319941592|ref|ZP_08015918.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319804962|gb|EFW01804.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 110

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VV E CI CK TDCV+VCPVDCF EG NFL I PDECIDC VC PECP  AI    D
Sbjct: 1   MPHVVCEACIGCKRTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPEAAIYAEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                + ++++N+E A +WP+IT +K     A +  GV  K +
Sbjct: 61  VPEDQKEFIELNAELAREWPSITHRKPYADDADEWRGVPNKIK 103


>gi|300311230|ref|YP_003775322.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
 gi|300074015|gb|ADJ63414.1| ferredoxin protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/111 (46%), Positives = 63/111 (56%), Gaps = 4/111 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVT++CI CK+TDCV VCP+DCF EG NFL I PD CIDC +C PECPV AI    D
Sbjct: 1   MPFVVTDSCIQCKYTDCVSVCPMDCFVEGPNFLVIDPDGCIDCSMCVPECPVGAIYNATD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
               L  + ++N+  + Q  W  IT  K  LP   K   V  K      P 
Sbjct: 61  LPATLAHFEQLNARLSRQPGWKPITQAKPPLPGHEKWKDVADKLPLLEQPQ 111


>gi|152982564|ref|YP_001353330.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282641|gb|ABR91051.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 114

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/108 (50%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VVTE CI CK+TDCV VCP+DCF+EG NFLAI+PDECIDC VC PECPV+AI    +
Sbjct: 1   MPFVVTEACIQCKYTDCVVVCPMDCFFEGPNFLAINPDECIDCSVCVPECPVNAIIGATE 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
             P  + ++ +N E +    W  I+  KE +P   K   VK K     
Sbjct: 61  VAPEQQHFVALNRELSQHPDWKRISKPKEPMPGHEKWAQVKDKLPLLV 108


>gi|269958328|ref|YP_003328115.1| ferredoxin [Anaplasma centrale str. Israel]
 gi|269848157|gb|ACZ48801.1| ferredoxin [Anaplasma centrale str. Israel]
          Length = 123

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEGEN L I PD+CIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGENMLVIDPDQCIDCGVCVPECPVDAIVSDEF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + KIN+E++ +W NIT  K  +  A +      K  +YF
Sbjct: 61  IEDIISCDDSTLNERQQSLKAFHKINAEFSKKWKNITASKPPMEEAERYKDDLNK-AQYF 119

Query: 105 SPN 107
             N
Sbjct: 120 KEN 122


>gi|117573292|gb|ABK40822.1| ferredoxin [Pseudomonas sp. C10-186]
 gi|117573294|gb|ABK40823.1| ferredoxin [Pseudomonas sp. C10-189]
 gi|117573296|gb|ABK40824.1| ferredoxin [Pseudomonas sp. C10-190]
 gi|117573302|gb|ABK40827.1| ferredoxin [Pseudomonas sp. C10-205]
          Length = 99

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP--GLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPTGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK++LP A + DG   K    
Sbjct: 61  IELNAELADIWPNITEKKDALPDAEEWDGKTGKIADL 97


>gi|50956566|gb|AAT90813.1| probable ferredoxin [uncultured proteobacterium QS1]
          Length = 124

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+NCI C+HT CV++CP D F+ G NF+ I PDEC+DCG+C PECP +AI+P+++
Sbjct: 1   MTYVVTDNCIQCRHTSCVDICPADAFHLGPNFIVISPDECVDCGLCLPECPEEAIEPESQ 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  +L++N+E A +WP I  + E LP   K    + K 
Sbjct: 61  LNDSNYHFLRLNAELAERWPVILQRIEPLPDYQKWSRQENKL 102


>gi|15597911|ref|NP_251405.1| ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|107102238|ref|ZP_01366156.1| hypothetical protein PaerPA_01003290 [Pseudomonas aeruginosa PACS2]
 gi|116050700|ref|YP_790480.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891124|ref|YP_002439990.1| putative ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|254235694|ref|ZP_04929017.1| hypothetical protein PACG_01630 [Pseudomonas aeruginosa C3719]
 gi|254241140|ref|ZP_04934462.1| hypothetical protein PA2G_01829 [Pseudomonas aeruginosa 2192]
 gi|296388818|ref|ZP_06878293.1| putative ferredoxin [Pseudomonas aeruginosa PAb1]
 gi|313107772|ref|ZP_07793951.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
 gi|9948790|gb|AAG06103.1|AE004699_8 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|115585921|gb|ABJ11936.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167625|gb|EAZ53136.1| hypothetical protein PACG_01630 [Pseudomonas aeruginosa C3719]
 gi|126194518|gb|EAZ58581.1| hypothetical protein PA2G_01829 [Pseudomonas aeruginosa 2192]
 gi|218771349|emb|CAW27116.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|310880453|gb|EFQ39047.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
          Length = 112

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECPV AI+ + E
Sbjct: 1   MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N E A    W  IT KK +        G+  K  + 
Sbjct: 61  VPLGQRQFIALNGELAAHPNWTQITRKKPAPDDHDAWFGLPGKLAEL 107


>gi|239948395|ref|ZP_04700148.1| ferredoxin [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922671|gb|EER22695.1| ferredoxin [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 109

 Score =  133 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/107 (57%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCIPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++   ++     W NIT KK +LP A K    K K+ KY +
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKKKPALPDADKFKDEKDKFNKYIN 106


>gi|56417282|ref|YP_154356.1| ferredoxin II [Anaplasma marginale str. St. Maries]
 gi|222475646|ref|YP_002564063.1| ferredoxin II (fdxA) [Anaplasma marginale str. Florida]
 gi|254995448|ref|ZP_05277638.1| ferredoxin II (fdxA) [Anaplasma marginale str. Mississippi]
 gi|255003639|ref|ZP_05278603.1| ferredoxin II (fdxA) [Anaplasma marginale str. Puerto Rico]
 gi|255004765|ref|ZP_05279566.1| ferredoxin II (fdxA) [Anaplasma marginale str. Virginia]
 gi|56388514|gb|AAV87101.1| ferredoxin II [Anaplasma marginale str. St. Maries]
 gi|222419784|gb|ACM49807.1| ferredoxin II (fdxA) [Anaplasma marginale str. Florida]
          Length = 123

 Score =  133 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/123 (48%), Positives = 74/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEGEN L I PD+CIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGENMLVIDPDQCIDCGVCVPECPVDAIVSDEF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + KIN+E++ +W NIT  K  +  A +      K  +YF
Sbjct: 61  IEDIISCDDSALNERQQSLKAFHKINAEFSKKWKNITASKPPMEEAERYKDDLNK-AQYF 119

Query: 105 SPN 107
             N
Sbjct: 120 KEN 122


>gi|154248128|ref|YP_001419086.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Xanthobacter autotrophicus Py2]
 gi|154162213|gb|ABS69429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Xanthobacter autotrophicus Py2]
          Length = 110

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/87 (66%), Positives = 64/87 (73%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTENCI C + DCV VCPVDCFY GEN L IHPDECIDCGVCEPECP  AI PD++
Sbjct: 1  MAYVVTENCIRCTYMDCVSVCPVDCFYAGENMLVIHPDECIDCGVCEPECPAAAIFPDSD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESL 87
          P    W  +N++YA QWPNIT K    
Sbjct: 61 PRAGDWAALNAQYAAQWPNITEKGAPP 87


>gi|225677141|ref|ZP_03788140.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590808|gb|EEH12036.1| ferredoxin, 4Fe-4S [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 124

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDC EVCPVDCFYEG+N L I+PDECIDCGVC PECPVDAI  D  
Sbjct: 1   MTHFVTDKCIKCKYTDCAEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +   + +  IN EY+ +WPNIT KK+ L +A +    K K   YF
Sbjct: 61  IKDILELDEELLNSEQKIFKSFYNINVEYSQKWPNITAKKQPLYTAEEYKEKKDK-TAYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|32470342|ref|NP_863589.1| ferredoxin [Acidithiobacillus ferrooxidans]
 gi|1657802|gb|AAC80173.1| ferredoxin [Acidithiobacillus ferrooxidans]
          Length = 122

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 68/95 (71%), Gaps = 2/95 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVTE CI CK+TDCV VCPVDCF+EG NFLAI PDECIDC +C PECPVDAI  D +
Sbjct: 1  MTHVVTEACIRCKYTDCVTVCPVDCFHEGPNFLAIDPDECIDCTLCVPECPVDAIFRDVD 60

Query: 61 PGL--ELWLKINSEYATQWPNITTKKESLPSAAKM 93
               E + ++N+  A +WP I  KK +LP A + 
Sbjct: 61 LPDAVEKYPELNARLARRWPVIIQKKPALPDAEQW 95


>gi|115379402|ref|ZP_01466505.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|310822281|ref|YP_003954639.1| ferrodoxin, 4fe-4S [Stigmatella aurantiaca DW4/3-1]
 gi|115363589|gb|EAU62721.1| ferredoxin [Stigmatella aurantiaca DW4/3-1]
 gi|309395353|gb|ADO72812.1| Ferrodoxin, 4Fe-4S [Stigmatella aurantiaca DW4/3-1]
          Length = 113

 Score =  133 bits (335), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 69/114 (60%), Gaps = 4/114 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVV E CI CK+TDCVEVCPV+CFYEG NFL IHPDECIDCG CEP CP  AI P++E
Sbjct: 1   MAYVVAEPCIKCKYTDCVEVCPVNCFYEGANFLVIHPDECIDCGACEPVCPTKAIFPESE 60

Query: 61  --PGLELWLKINSEYAT-QWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + +  +N + +   WPN+  K   LP A +    K K        PG +
Sbjct: 61  LPDKWKEYKDLNDKLSKGGWPNLAEKLSELPEADEYKDKKDKR-ALLDTAPGKR 113


>gi|56708759|ref|YP_170655.1| ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89255529|ref|YP_512890.1| ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110671231|ref|YP_667788.1| ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115314046|ref|YP_762769.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118498303|ref|YP_899353.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. novicida U112]
 gi|134301185|ref|YP_001121153.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|167010305|ref|ZP_02275236.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656480|ref|YP_001427532.2| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|187930966|ref|YP_001890950.1| ferredoxin-1 [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194323887|ref|ZP_03057662.1| ferredoxin-1 [Francisella tularensis subsp. novicida FTE]
 gi|208780133|ref|ZP_03247476.1| ferredoxin-1 [Francisella novicida FTG]
 gi|224457976|ref|ZP_03666449.1| ferredoxin-1 [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254366956|ref|ZP_04982993.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|254368509|ref|ZP_04984526.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|254371377|ref|ZP_04987378.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|254371971|ref|ZP_04987464.1| ferredoxin [Francisella tularensis subsp. novicida GA99-3549]
 gi|254375113|ref|ZP_04990593.1| 4Fe-4S binding domain protein [Francisella novicida GA99-3548]
 gi|254875633|ref|ZP_05248343.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|290954290|ref|ZP_06558911.1| ferredoxin [Francisella tularensis subsp. holarctica URFT1]
 gi|295312297|ref|ZP_06803087.1| ferredoxin [Francisella tularensis subsp. holarctica URFT1]
 gi|54112673|gb|AAV28970.1| NT02FT0365 [synthetic construct]
 gi|56605251|emb|CAG46397.1| Ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89143360|emb|CAJ78530.1| Ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110321564|emb|CAL09780.1| Ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115128945|gb|ABI82132.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118424209|gb|ABK90599.1| 4Fe-4S ferredoxin [Francisella novicida U112]
 gi|134048962|gb|ABO46033.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134252783|gb|EBA51877.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|151569616|gb|EDN35270.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|151569702|gb|EDN35356.1| ferredoxin [Francisella novicida GA99-3549]
 gi|151572831|gb|EDN38485.1| 4Fe-4S binding domain protein [Francisella novicida GA99-3548]
 gi|157121403|gb|EDO65604.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|164551548|gb|ABU60576.2| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|187711875|gb|ACD30172.1| ferredoxin-1 [Francisella tularensis subsp. mediasiatica FSC147]
 gi|194321784|gb|EDX19267.1| ferredoxin-1 [Francisella tularensis subsp. novicida FTE]
 gi|208744137|gb|EDZ90438.1| ferredoxin-1 [Francisella novicida FTG]
 gi|254841632|gb|EET20068.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282160082|gb|ADA79473.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332184867|gb|AEE27121.1| Ferredoxin [Francisella cf. novicida 3523]
 gi|332679040|gb|AEE88169.1| Ferredoxin [Francisella cf. novicida Fx1]
          Length = 107

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VVTE+CI CK+ DCVEVCPVDCFYEG N L I+PDECIDC +CEPECPV+AIK   D
Sbjct: 1   MPFVVTESCIKCKYGDCVEVCPVDCFYEGPNMLVINPDECIDCALCEPECPVNAIKSSDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                E  L +N E A  WPNI  K E    A     V  K +
Sbjct: 61  LSENEEQMLDLNRELAGIWPNIVEKCEPCEDADNWASVPDKLK 103


>gi|91206087|ref|YP_538442.1| ferredoxin [Rickettsia bellii RML369-C]
 gi|157826613|ref|YP_001495677.1| ferredoxin [Rickettsia bellii OSU 85-389]
 gi|122425218|sp|Q1RH11|FER_RICBR RecName: Full=Ferredoxin
 gi|91069631|gb|ABE05353.1| Ferredoxin [Rickettsia bellii RML369-C]
 gi|157801917|gb|ABV78640.1| Ferredoxin [Rickettsia bellii OSU 85-389]
          Length = 107

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP+T 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPET- 59

Query: 61  PGLELWLKINSEYA--TQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P L  W++    +    +W  IT KK +LP A K    K K+ KY 
Sbjct: 60  PELIEWVERAKHFIEHEKWQVITKKKPALPDADKFKDEKDKFNKYI 105


>gi|117573332|gb|ABK40842.1| ferredoxin [Pseudomonas sp. K93.52]
          Length = 99

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 69/97 (71%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAVAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           +++N+E A  WPNIT KK+ +P A + DG   K    
Sbjct: 61  IELNAELADVWPNITEKKDPMPGAEEWDGKTGKIADL 97


>gi|157826297|ref|YP_001494017.1| ferredoxin [Rickettsia akari str. Hartford]
 gi|157800255|gb|ABV75509.1| Ferredoxin [Rickettsia akari str. Hartford]
          Length = 109

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/107 (57%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++   ++     W NIT  K +LP A K    K K+ KY +
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKNKPALPDADKFKDEKNKFNKYIN 106


>gi|67459707|ref|YP_247331.1| ferredoxin [Rickettsia felis URRWXCal2]
 gi|75535902|sp|Q4UJX3|FER_RICFE RecName: Full=Ferredoxin
 gi|67005240|gb|AAY62166.1| Ferredoxin [Rickettsia felis URRWXCal2]
          Length = 109

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/107 (56%), Positives = 76/107 (71%), Gaps = 3/107 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVV + C+ CK+TDCV+VCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVNDECVKCKYTDCVDVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L  W++   ++     W NIT KK +LP A K    K K+ KY +
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKKKPALPDADKFKDEKNKFNKYIN 106


>gi|152987732|ref|YP_001349347.1| putative ferredoxin [Pseudomonas aeruginosa PA7]
 gi|150962890|gb|ABR84915.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 112

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MT+VV E CI CKHTDCVEVCPVDCFYEG NFL IHP+ECIDC +CEPECPV AI+ + E
Sbjct: 1   MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPEECIDCALCEPECPVAAIRAEDE 60

Query: 61  --PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              G   ++ +N E A    W  IT KK +        G+  K  + 
Sbjct: 61  VPLGQRQFIGLNGELAAHPNWTRITRKKPAPDDHDAWFGMPGKLAEL 107


>gi|83815572|ref|YP_444389.1| ferredoxin [Salinibacter ruber DSM 13855]
 gi|83756966|gb|ABC45079.1| ferredoxin [Salinibacter ruber DSM 13855]
          Length = 148

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI P+  
Sbjct: 35  MPYVVAEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPEDQ 94

Query: 60  -EPGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVKQKYEKYFS 105
                E + + N   A QW     N+T K   L  A   +  ++  E   +
Sbjct: 95  LPEEWEHYTQWNEYLANQWRDLGYNVTEKTGPLDDAEAWEDAEKSEEDILT 145


>gi|157829118|ref|YP_001495360.1| ferredoxin [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933842|ref|YP_001650631.1| ferredoxin [Rickettsia rickettsii str. Iowa]
 gi|157801599|gb|ABV76852.1| ferredoxin [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908929|gb|ABY73225.1| ferredoxin [Rickettsia rickettsii str. Iowa]
          Length = 116

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 76/110 (69%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYI 109


>gi|117573298|gb|ABK40825.1| ferredoxin [Pseudomonas sp. C10-197]
 gi|117573300|gb|ABK40826.1| ferredoxin [Pseudomonas sp. C10-204]
 gi|117573322|gb|ABK40837.1| ferredoxin [Pseudomonas sp. S8-110]
 gi|117573324|gb|ABK40838.1| ferredoxin [Pseudomonas sp. S8-130]
          Length = 99

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELW 66
           CI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E +
Sbjct: 1   CIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGMENF 60

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           + +N+E A  WPNIT KK++LP A + DG + K    
Sbjct: 61  IVLNAELADIWPNITEKKDALPDAEEWDGKEGKIADL 97


>gi|157964977|ref|YP_001499801.1| ferredoxin [Rickettsia massiliae MTU5]
 gi|157844753|gb|ABV85254.1| Ferredoxin [Rickettsia massiliae MTU5]
          Length = 116

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 76/110 (69%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKPALPDADKFKDEKDKFNKYI 109


>gi|15893206|ref|NP_360920.1| ferredoxin [Rickettsia conorii str. Malish 7]
 gi|81774396|sp|Q92G41|FER_RICCN RecName: Full=Ferredoxin
 gi|15620421|gb|AAL03821.1| ferredoxin [Rickettsia conorii str. Malish 7]
          Length = 116

 Score =  131 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 76/110 (69%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYI 109


>gi|68171341|ref|ZP_00544738.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658543|ref|YP_506870.1| ferredoxin A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999239|gb|EAM85892.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600000|gb|ABD45469.1| ferredoxin A [Ehrlichia chaffeensis str. Arkansas]
          Length = 125

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ +T+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI PD  
Sbjct: 1   MTHFITDRCIRCKYTDCVEVCPVDCFYEGANMLVIDPDQCIDCGVCVPECPIDAIVPDDF 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  L+ + +IN +++ +W NIT+ K     A      K K+  YF
Sbjct: 61  IRDVLECNDSALNEEQKNLKKFYEINKKFSKEWNNITSAKPPYSDAESHKYTKNKF-IYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|15604660|ref|NP_221178.1| ferredoxin (fdxA) [Rickettsia prowazekii str. Madrid E]
 gi|6647508|sp|Q9ZCC8|FER_RICPR RecName: Full=Ferredoxin
 gi|3861355|emb|CAA15254.1| FERREDOXIN (fdxA) [Rickettsia prowazekii]
 gi|292572488|gb|ADE30403.1| Ferredoxin [Rickettsia prowazekii Rp22]
          Length = 109

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 3/106 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P L  W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 60  PELIEWVERAKDFIENHGWKNITKKKCALPGADKFKDEKDKFNKYI 105


>gi|229587193|ref|YP_002845694.1| Ferredoxin [Rickettsia africae ESF-5]
 gi|228022243|gb|ACP53951.1| Ferredoxin [Rickettsia africae ESF-5]
          Length = 116

 Score =  130 bits (327), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 75/110 (68%), Gaps = 7/110 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+P ECIDCGVC P+CP+ AIK
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPAECIDCGVCVPDCPIGAIK 60

Query: 57  PDTEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
           P++ PGL  W++   ++     W NIT KK +LP A K    K K+ KY 
Sbjct: 61  PES-PGLIEWVERAKDFIENKGWKNITKKKTALPDADKFKDEKDKFNKYI 109


>gi|51473997|ref|YP_067754.1| ferredoxin [Rickettsia typhi str. Wilmington]
 gi|81692331|sp|Q68Y04|FER_RICTY RecName: Full=Ferredoxin
 gi|51460309|gb|AAU04272.1| ferredoxin [Rickettsia typhi str. Wilmington]
          Length = 110

 Score =  129 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 3/109 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTY+VT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYIVTDECVKCKYTDCVEVCPVDCFYEGEFMLVINPDECIDCGVCVPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           P L  W++   ++     W NIT KK +LP A K    + K+ KY   N
Sbjct: 60  PELIEWVERAKDFIENQGWKNITKKKCALPDADKFKDEQDKFNKYIIKN 108


>gi|52857656|gb|AAU89081.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score =  129 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/80 (80%), Positives = 68/80 (85%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA  WP I
Sbjct: 61 QNLEKWLGVNAEYAKTWPTI 80


>gi|294506132|ref|YP_003570190.1| Ferredoxin [Salinibacter ruber M8]
 gi|294342460|emb|CBH23238.1| Ferredoxin [Salinibacter ruber M8]
          Length = 141

 Score =  129 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 65/111 (58%), Gaps = 6/111 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YVV E CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI P+  
Sbjct: 28  MPYVVAEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPEDQ 87

Query: 60  -EPGLELWLKINSEYATQWP----NITTKKESLPSAAKMDGVKQKYEKYFS 105
                E + + N   A QW     N+T K   L  A   +  ++  E   +
Sbjct: 88  LPEEWEHYTQWNEYLANQWRDLGYNVTEKTGPLDDAEAWEDAEKSEEDILT 138


>gi|88606918|ref|YP_504664.1| ferredoxin [Anaplasma phagocytophilum HZ]
 gi|88597981|gb|ABD43451.1| ferredoxin [Anaplasma phagocytophilum HZ]
          Length = 126

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--- 57
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP DAI     
Sbjct: 1   MTHFVTDRCIRCKYTDCVEVCPVDCFYEGNNMLVIDPDQCIDCGVCVPECPADAIVSDEF 60

Query: 58  -------------DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                        D +  L+ + KIN +++ +W NIT+ +  L  A     +  KY+ +F
Sbjct: 61  IEDVLASDDSALNDEQKMLKTFYKINEDFSKKWKNITSAQPHLEDADTYKSMAGKYQ-FF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|304309916|ref|YP_003809514.1| Ferrodoxin [gamma proteobacterium HdN1]
 gi|301795649|emb|CBL43848.1| Ferrodoxin [gamma proteobacterium HdN1]
          Length = 108

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
           M +VV +NCI CK+T C EVCPV+ F+EG NFL I P+ CIDC +C P C   +I  + D
Sbjct: 1   MAHVVLDNCINCKYTYCAEVCPVEAFHEGPNFLVIDPEACIDCMLCVPACITGSIMEERD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                   ++ N+  + QWP+I  +K + P A + D V  K
Sbjct: 61  VPHSQRSMVRANAMLSQQWPSIIERKPAFPDAEEWDKVPGK 101


>gi|157804217|ref|YP_001492766.1| ferredoxin [Rickettsia canadensis str. McKiel]
 gi|157785480|gb|ABV73981.1| Ferredoxin [Rickettsia canadensis str. McKiel]
          Length = 114

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 3/105 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE  L I+PDECIDCGVC P+CP+DAIKP++ 
Sbjct: 1   MTYVVTDECVKCKYTDCVEVCPVDCFYEGELMLVINPDECIDCGVCIPDCPIDAIKPES- 59

Query: 61  PGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
           P L  W++   ++     W NIT K+ +L  A K    K K+ KY
Sbjct: 60  PELIEWVERAKDFIENKGWKNITKKRPALTDADKFKDEKDKFNKY 104


>gi|326331682|ref|ZP_08197970.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325950481|gb|EGD42533.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 536

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/109 (40%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           MTYV+T++C  C    CVEVCPVDC + G +         L IHPDECIDCG CE  CPV
Sbjct: 1   MTYVITQSC--CNDASCVEVCPVDCIHPGPDEPGFGAAEMLYIHPDECIDCGACEDACPV 58

Query: 53  DAIKPD--TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
           +AI PD         ++ IN+ +              P  AK+ G   K
Sbjct: 59  NAIFPDYEVPDAFAPYVDINAAFFEFTGEQDEPAPLPPPGAKIPGGPLK 107


>gi|113866665|ref|YP_725154.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525441|emb|CAJ91786.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 109

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 4/104 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI    D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKY 100
                  ++ +N+E + +  W  +   K  +P   +  G   + 
Sbjct: 61  LPEDQRHFIALNAELSRRADWLPLLKAKGPIPGHEQWAGHPDRL 104


>gi|73666649|ref|YP_302665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ehrlichia canis str. Jake]
 gi|72393790|gb|AAZ68067.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Ehrlichia canis str.
           Jake]
          Length = 125

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/123 (47%), Positives = 75/123 (60%), Gaps = 17/123 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MT+ VT+ CI CK+TDCVEVCPVDCFYEG N L I PD+CIDCGVC PECP+DAI PD  
Sbjct: 1   MTHFVTDKCIRCKYTDCVEVCPVDCFYEGANMLVIDPDQCIDCGVCIPECPIDAIVPDDS 60

Query: 60  ---------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
                          +  ++   +IN +++ +W NIT+ K + P A      K K+ KYF
Sbjct: 61  IKDILECSDSELNEEQKNIKKSYEINKKFSKEWKNITSAKTAYPEAESYKYRKDKF-KYF 119

Query: 105 SPN 107
             N
Sbjct: 120 DEN 122


>gi|167720232|ref|ZP_02403468.1| ferredoxin [Burkholderia pseudomallei DM98]
 gi|167846357|ref|ZP_02471865.1| ferredoxin [Burkholderia pseudomallei B7210]
 gi|167903326|ref|ZP_02490531.1| ferredoxin [Burkholderia pseudomallei NCTC 13177]
          Length = 107

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 64/101 (63%), Gaps = 4/101 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +      
Sbjct: 2   EGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQR 61

Query: 65  LWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 62  HFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|152982480|ref|YP_001354084.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151282557|gb|ABR90967.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 114

 Score =  127 bits (320), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M Y+VTE CI CK  DC+EVCP   F+ GENF+ I+PD C++CG+CE  CP  AIK   D
Sbjct: 1   MAYIVTEACIRCKFMDCIEVCPTYAFHAGENFVVINPDTCVNCGLCEMVCPTQAIKAKGD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE-KYFSPNPGGK 111
                 +++++N+  A  WP IT K      A    GV  K E   ++P+P  K
Sbjct: 61  ATEKELVFVELNARLAKNWPAITQKGMVPADAGNWIGVSDKKEFLLYTPDPAAK 114


>gi|167816449|ref|ZP_02448129.1| putative ferredoxin [Burkholderia pseudomallei 91]
 gi|167894938|ref|ZP_02482340.1| putative ferredoxin [Burkholderia pseudomallei 7894]
          Length = 107

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/101 (50%), Positives = 63/101 (62%), Gaps = 4/101 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           E CI CKHTDCV VCPVD F+EG NFL I PDECIDC +CEPECP+DAI+   +      
Sbjct: 2   EGCIRCKHTDCVAVCPVDRFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQR 61

Query: 65  LWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 62  HFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|73540321|ref|YP_294841.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117734|gb|AAZ59997.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 109

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MT+VVT+ CI C+HTDCVEVCP+ CF+EG NFLAI PD+CIDC +C P CPV AI    D
Sbjct: 1   MTFVVTDACIQCRHTDCVEVCPMSCFHEGPNFLAIDPDQCIDCSMCVPLCPVGAIYSEHD 60

Query: 59  TEPGLELWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKYF 104
                  ++ IN+E A +  W  +   K  L   A       +     
Sbjct: 61  LPEDQRHFVAINAELARRPDWLPLRKAKGPLSDHADWADHPDRLSLLI 108


>gi|126436658|ref|YP_001072349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|126236458|gb|ABN99858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 548

 Score =  126 bits (318), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+NC  CK   CV VCPVDC           G   L I P+ CIDCG C  ECPV
Sbjct: 1  MAYVITQNC--CKDASCVPVCPVDCIRPAGEAGQFVGTEMLYIDPETCIDCGACLEECPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWP 78
          DAI  D       E + +IN+ Y  + P
Sbjct: 59 DAIYYDEDLPADQERFREINASYFQRHP 86


>gi|226939570|ref|YP_002794643.1| 4Fe-4S ferredoxin, iron-sulfur binding [Laribacter hongkongensis
           HLHK9]
 gi|226714496|gb|ACO73634.1| 4Fe-4S ferredoxin, iron-sulfur binding [Laribacter hongkongensis
           HLHK9]
          Length = 112

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/107 (48%), Positives = 64/107 (59%), Gaps = 4/107 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MT+VVTE CI CK+TDCVEVCPVDCF EG NFL I P ECIDC +C  ECPV AI    D
Sbjct: 1   MTHVVTEACIRCKYTDCVEVCPVDCFREGPNFLVIDPRECIDCVLCVAECPVGAIYADDD 60

Query: 59  TEPGLELWLKINSEYAT--QWPNITTKKESLPSAAKMDGVKQKYEKY 103
             P  + ++ +N+E A   +W  IT  +     A     V  K ++ 
Sbjct: 61  VPPDQQDFIALNAELAAHPEWRPITMARLPPDDADDWARVLDKRQEL 107


>gi|167744446|ref|ZP_02417220.1| putative ferredoxin [Burkholderia pseudomallei 14]
          Length = 107

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 64/101 (63%), Gaps = 4/101 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           E CI CKHTDCV VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   +      
Sbjct: 2   EGCIRCKHTDCVAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAAAELPDDQR 61

Query: 65  LWLKINSEYATQ--WPNITTKKESLPSAAKMDGVKQKYEKY 103
            ++ +N+E A    WP I  KK +LP  A    V+ K  + 
Sbjct: 62  PFVALNAELARHPNWPRIIGKKPALPDHAAWADVQGKLAQL 102


>gi|52857660|gb|AAU89083.1| ferredoxin [uncultured Afipia sp.]
          Length = 81

 Score =  124 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/79 (78%), Positives = 67/79 (84%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +++EYA  WP 
Sbjct: 61 QNLEKWLGVSAEYAKTWPT 79


>gi|255021029|ref|ZP_05293082.1| ferredoxin, 4Fe-4S [Acidithiobacillus caldus ATCC 51756]
 gi|254969443|gb|EET26952.1| ferredoxin, 4Fe-4S [Acidithiobacillus caldus ATCC 51756]
          Length = 107

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/101 (58%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYVVTE+CI CK+TDCV+VCPVDCF EG NFL I PDECIDC +CEPECP +AI  D  
Sbjct: 1   MTYVVTESCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCTLCEPECPAEAIFRDDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
              G E +L+IN+  A  WP I  KK +   A     VK K
Sbjct: 61  LPEGQEEFLEINARLAKTWPPIIQKKAAPADADDWAKVKDK 101


>gi|254428704|ref|ZP_05042411.1| 4Fe-4S binding domain protein [Alcanivorax sp. DG881]
 gi|196194873|gb|EDX89832.1| 4Fe-4S binding domain protein [Alcanivorax sp. DG881]
          Length = 90

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 64/89 (71%), Gaps = 2/89 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           +EVCPVDCFYEGENFL IHPDECIDC +CEPECPV+AI  + E     + +L+IN++ A 
Sbjct: 1   MEVCPVDCFYEGENFLVIHPDECIDCALCEPECPVNAIFSEDELPDDQQDFLEINADLAE 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           +WPNIT  K++   A + DGV  K EK  
Sbjct: 61  KWPNITEMKDAPDDAEEWDGVPNKREKLV 89


>gi|52857664|gb|AAU89085.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/78 (79%), Positives = 67/78 (85%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWP 78
            LE WL +++EYA  WP
Sbjct: 61 QNLEKWLGVSAEYAKTWP 78


>gi|91983688|gb|ABE68850.1| FdxA [Pseudomonas sp. Q37-87]
          Length = 92

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEY 73
           DCVEVCPVDCFYEG NFL IHPDECIDC +CEPECP +AI  + E   G+E ++++N+E 
Sbjct: 1   DCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPANAIFSEDEVPAGMENFIELNAEL 60

Query: 74  ATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           A  WPNIT KK++LP A + DG   K    
Sbjct: 61  ADIWPNITEKKDALPDAEEWDGKTGKIADL 90


>gi|88608216|ref|YP_506219.1| ferredoxin [Neorickettsia sennetsu str. Miyayama]
 gi|88600385|gb|ABD45853.1| ferredoxin [Neorickettsia sennetsu str. Miyayama]
          Length = 139

 Score =  123 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 63/122 (51%), Gaps = 23/122 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTE C+ CK+TDCVEVCPVDCF+E   +L I PD CIDCGVC PECP++AI  D  
Sbjct: 1   MPHVVTEKCVKCKYTDCVEVCPVDCFHEAGEYLVIDPDVCIDCGVCVPECPIEAIISDET 60

Query: 60  ----------------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                                 +      L  N E A + P I TKK+ L  A K   V 
Sbjct: 61  YIDGKSLGEIISVSDASLLTKKQLDARFMLVFNRERAAELPLIVTKKDPLDGAEKWAEVP 120

Query: 98  QK 99
            K
Sbjct: 121 NK 122


>gi|226308457|ref|YP_002768417.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226187574|dbj|BAH35678.1| probable ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 560

 Score =  123 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C +   +         L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEAPFATTEMLYIDPDTCIDCGACVDECPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          +AI PD E       +L++N+ Y  + P
Sbjct: 59 EAIFPDNELDEDDAPYLQMNASYFEKHP 86


>gi|52857658|gb|AAU89082.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/78 (79%), Positives = 66/78 (84%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWP 78
            LE WL +N+EYA   P
Sbjct: 61 QNLEKWLGVNAEYAKTXP 78


>gi|254796711|ref|YP_003081547.1| ferredoxin [Neorickettsia risticii str. Illinois]
 gi|254589951|gb|ACT69313.1| ferredoxin [Neorickettsia risticii str. Illinois]
          Length = 139

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 62/122 (50%), Gaps = 23/122 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +VVTE C+ CK+TDCVEVCPVDCF+E   +L I PD CIDCGVC PECP++AI  D  
Sbjct: 1   MPHVVTEKCLKCKYTDCVEVCPVDCFHEAGEYLVIDPDVCIDCGVCVPECPIEAIINDET 60

Query: 60  ----------------------EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                                 +      +  N E A + P I  KK+ L  A K   V 
Sbjct: 61  YIDGKSLEEIISVSDTSLLTKKQLDARFMVVFNRERAAELPLIVMKKDPLDGAEKWAEVP 120

Query: 98  QK 99
            K
Sbjct: 121 NK 122


>gi|52857666|gb|AAU89086.1| ferredoxin [uncultured Afipia sp.]
          Length = 80

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/80 (77%), Positives = 66/80 (82%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPNI 80
            LE WL +N+EYA     I
Sbjct: 61 QNLEKWLGVNAEYAKTXXTI 80


>gi|52857662|gb|AAU89084.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/79 (78%), Positives = 66/79 (83%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQWPN 79
            LE WL +N+EYA   P 
Sbjct: 61 QNLEKWLGVNAEYAKTGPT 79


>gi|262197809|ref|YP_003269018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081156|gb|ACY17125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 131

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/126 (42%), Positives = 63/126 (50%), Gaps = 23/126 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M Y+V + C+ CK+TDCV VCPVDCFYEG+NFL IHPDECIDCG CEPECP  AI    D
Sbjct: 1   MPYIVADPCVKCKYTDCVAVCPVDCFYEGKNFLVIHPDECIDCGACEPECPTTAIFEEGD 60

Query: 59  TEPGLELWLKINSEY---------------------ATQWPNITTKKESLPSAAKMDGVK 97
                  +  IN+ +                     A  WPNIT +   L  A      +
Sbjct: 61  LPEKWNAYKTINAVFSGAEEMGDVDTEGWPEQLKASAQVWPNITEQGSPLDGADDAKDEE 120

Query: 98  QKYEKY 103
            K    
Sbjct: 121 NKIAAL 126


>gi|226364584|ref|YP_002782366.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226243073|dbj|BAH53421.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 559

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C +   +         L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEKPFATTEMLYIDPDTCIDCGACVEECPV 58

Query: 53 DAIKPDTEPG--LELWLKINSEYATQWPNITTKKESL 87
          +AI  + +     E +L IN++Y T+ P      E L
Sbjct: 59 EAIYAENDLDEVDEPYLDINAQYYTKHPIGPDWPEPL 95


>gi|111017434|ref|YP_700406.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110816964|gb|ABG92248.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 542

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
           M YVVT+NC  C    CV VCPVDC +             L I P  CIDCG C   CPV
Sbjct: 1   MAYVVTQNC--CNDATCVAVCPVDCIHPTPAEREYQRTEMLYIDPGACIDCGACADVCPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKE---SLPSAAKMDGVKQ 98
           DAI P     P ++ + +IN+EY  + P           LP A     V  
Sbjct: 59  DAIVPGDAPAPDIDRYREINAEYFQRNPRSIAPGAHVQPLPLALATADVAD 109


>gi|111022079|ref|YP_705051.1| ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus jostii
          RHA1]
 gi|110821609|gb|ABG96893.1| possible ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus
          jostii RHA1]
          Length = 559

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV+VCPV+C +   +         L I PD CIDCG C  ECPV
Sbjct: 1  MAYVITQPC--CNDASCVDVCPVNCIHPTPDEKPFATTEMLYIDPDTCIDCGACVEECPV 58

Query: 53 DAIKPDTEPG--LELWLKINSEYATQWPNITTKKESL 87
          +AI  + +     E +L IN++Y T+ P      E L
Sbjct: 59 EAIYAENDLDEVDEPYLDINAQYYTKHPIGPDWPEPL 95


>gi|226304296|ref|YP_002764254.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183411|dbj|BAH31515.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 563

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 12/89 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTYVVT+ C  C    CV VCPV+C +   +         L I P+ CIDCG C   CP+
Sbjct: 1  MTYVVTQPC--CNDASCVAVCPVNCIHPTPDESDYARTEMLYIDPNTCIDCGACADACPI 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPN 79
          DAI PD+  + G   +L+IN++Y     N
Sbjct: 59 DAIVPDSDLDEGDMPYLEINADYFEDPKN 87


>gi|307069599|ref|YP_003878076.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
          [Candidatus Zinderia insecticola CARI]
 gi|306482859|gb|ADM89730.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
          [Candidatus Zinderia insecticola CARI]
          Length = 110

 Score =  120 bits (301), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT++VTE+CI CK+TDCVEVCPV+CF+EG NFL I+P+ECIDCGVC  ECP  AI    D
Sbjct: 1  MTHIVTESCIECKYTDCVEVCPVNCFHEGPNFLVINPEECIDCGVCVSECPAKAIYLEED 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
               + + KIN E + +WP I   K     A
Sbjct: 61 LPKNQKQFSKINLELSKKWPIINNSKPHKKDA 92


>gi|226361209|ref|YP_002778987.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239694|dbj|BAH50042.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 541

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
           M YVVT+NC  C    CV VCPVDC +             L I P  CIDCG C   CPV
Sbjct: 1   MAYVVTQNC--CNDATCVAVCPVDCIHPTPAEREYKRTEMLYIDPGACIDCGACSDVCPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWPNITTKKE---SLPSAAKMDGVKQ 98
           DAI P     P ++ +  IN+EY  + P           LP A    GV  
Sbjct: 59  DAIVPGDAPVPDIDRYRDINAEYFQRNPRSAAPGAHVQPLPIALATAGVDD 109


>gi|149916919|ref|ZP_01905420.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
 gi|149822197|gb|EDM81588.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
          Length = 102

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+VVT NC  C+ TDCV VCPV+CF+  +  L I PDECIDCG C PECPV+AI  +TE
Sbjct: 1  MTFVVTSNCQRCRFTDCVAVCPVECFHGDKEMLYIDPDECIDCGACVPECPVEAIYDETE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
            P    W++IN+  A++ P +   +  LP+A +
Sbjct: 61 VPPEQIEWIEINAARASELPVVAETETPLPTAEE 94


>gi|52857654|gb|AAU89080.1| ferredoxin [uncultured Afipia sp.]
          Length = 79

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/76 (78%), Positives = 65/76 (85%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYVVTENCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE
Sbjct: 1  MTYVVTENCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTE 60

Query: 61 PGLELWLKINSEYATQ 76
            LE WL +++EYA  
Sbjct: 61 QNLEKWLGVSAEYAKT 76


>gi|283780774|ref|YP_003371529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pirellula staleyi DSM 6068]
 gi|283439227|gb|ADB17669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
          staleyi DSM 6068]
          Length = 92

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 61/91 (67%), Gaps = 2/91 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VV + C  CK+TDCV VCPV+CFYEGE  L IHPDECIDC  C PECPV+AI     
Sbjct: 1  MAHVVCQPCFGCKYTDCVVVCPVECFYEGEQILYIHPDECIDCEACVPECPVEAIFHQDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPS 89
               + ++++N+E A Q P+IT KKE L  
Sbjct: 61 VPEDQKPFIELNAEMAPQSPSITEKKEPLAG 91


>gi|83816596|ref|YP_445271.1| ferredoxin-1 [Salinibacter ruber DSM 13855]
 gi|294507140|ref|YP_003571198.1| Ferredoxin-1 [Salinibacter ruber M8]
 gi|83757990|gb|ABC46103.1| ferredoxin-1 [Salinibacter ruber DSM 13855]
 gi|294343468|emb|CBH24246.1| Ferredoxin-1 [Salinibacter ruber M8]
          Length = 114

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 61/93 (65%), Gaps = 6/93 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YVVTE CI CK+TDCVEVCPVDCFYEG NFLAI PDECIDC  C P CPV+AI PD  
Sbjct: 1  MPYVVTEPCINCKYTDCVEVCPVDCFYEGPNFLAIQPDECIDCNACVPVCPVEAIYPDDQ 60

Query: 60 -EPGLELWLKINSEYATQWP----NITTKKESL 87
               E +++ N   + QW     N+T K   L
Sbjct: 61 LPEEYEHYIQWNEYLSNQWRELGYNVTEKTGPL 93


>gi|54027063|ref|YP_121305.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54018571|dbj|BAD59941.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 556

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPVDC     +         L I PD CIDCG C   CPV
Sbjct: 1  MAYVITQRC--CNDASCVSECPVDCIRPTPDQPEFATTEMLYIDPDTCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          +AI  + +    L  +  +N+ Y  + P
Sbjct: 59 EAIFSEDDLTASLARFRDVNAAYFQRHP 86


>gi|111018949|ref|YP_701921.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110818479|gb|ABG93763.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 553

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +             L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQAC--CNDASCVSACPVNCIHPTPEEREFAQTEMLHIDPETCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITT 82
          DAI P+ +    L  +  IN+EY T  P  T 
Sbjct: 59 DAIFPEDKLIGSLTRYKDINAEYYTTNPMPTG 90


>gi|117573290|gb|ABK40821.1| ferredoxin [Pseudomonas sp. C10-181]
          Length = 89

 Score =  117 bits (295), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 2/83 (2%)

Query: 19 EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQ 76
          EVCPVDCFYEG NFL IHPDECIDC +CEPECP  AI  + E   G+E ++ +N+E A  
Sbjct: 1  EVCPVDCFYEGPNFLVIHPDECIDCALCEPECPATAIFSEDEVPAGMENFIVLNAELADI 60

Query: 77 WPNITTKKESLPSAAKMDGVKQK 99
          WPNIT KK++LP A + DG + K
Sbjct: 61 WPNITEKKDALPDAEEWDGKEGK 83


>gi|325110113|ref|YP_004271181.1| ferredoxin [Planctomyces brasiliensis DSM 5305]
 gi|324970381|gb|ADY61159.1| ferredoxin [Planctomyces brasiliensis DSM 5305]
          Length = 92

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/91 (51%), Positives = 60/91 (65%), Gaps = 2/91 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VV + C  CK+TDCV VCPV+CFYEG+  L IHPDECIDC  C PECPV+AI  +  
Sbjct: 1  MPHVVCQPCFNCKYTDCVVVCPVECFYEGDKMLYIHPDECIDCEACVPECPVEAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPS 89
               + +++IN+E +   P IT KKE L  
Sbjct: 61 VPDEWKEYVEINAEKSADTPVITEKKEPLAD 91


>gi|114769350|ref|ZP_01446976.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114550267|gb|EAU53148.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 81

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 54/81 (66%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L IHPDECIDCGVCEPECP DAI PDTEP  E W++ N +Y+  WP I ++K  LP A 
Sbjct: 1   MLVIHPDECIDCGVCEPECPADAILPDTEPDTEKWVEFNRKYSEIWPVIISQKTPLPDAE 60

Query: 92  KMDGVKQKYEKYFSPNPGGKN 112
             DG + K EKYFS  PG   
Sbjct: 61  VRDGEEGKLEKYFSEKPGEGG 81


>gi|32474247|ref|NP_867241.1| ferredoxin [Rhodopirellula baltica SH 1]
 gi|32444785|emb|CAD74787.1| ferredoxin [Rhodopirellula baltica SH 1]
          Length = 91

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--E 60
          +VV E C  CK+TDCV VCPV+CFYEGE  L IHP+ECIDC  C PECPV+AI  +    
Sbjct: 2  HVVAEPCSGCKYTDCVVVCPVECFYEGEQMLYIHPEECIDCEACVPECPVEAIFHEDNLP 61

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPS 89
             + ++++N+E + +   IT KKE L  
Sbjct: 62 EEWQSYIELNAEMSEKTEVITEKKEPLAD 90


>gi|226361046|ref|YP_002778824.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239531|dbj|BAH49879.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 553

 Score =  116 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +             L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQAC--CNDASCVSACPVNCIHPTPEEREFAQTEMLHIDPETCIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITT 82
          DAI P+ +    L  +  IN+EY T  P  T 
Sbjct: 59 DAIFPEDKLVGSLARYKDINAEYYTTNPMPTG 90


>gi|262203739|ref|YP_003274947.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262087086|gb|ACY23054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 559

 Score =  116 bits (292), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T  C  C    CV VCPV+C +   +         L I P+ CIDCG C  ECPV
Sbjct: 1   MAHVITRPC--CNDASCVAVCPVNCIHPTPDEPEFFTAESLYIDPETCIDCGACIDECPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPN----ITTKKES-LPS 89
           +AI PD   E   E +L+IN++Y          +  KK   LP 
Sbjct: 59  EAIIPDDSLEERDEPYLQINADYYKDHDVEGGLVPPKKAPQLPD 102


>gi|222102890|ref|YP_002539929.1| ferredoxin [Agrobacterium vitis S4]
 gi|221739491|gb|ACM40224.1| ferredoxin [Agrobacterium vitis S4]
          Length = 101

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MTYVVT+ C  C++T+CV VCPV+CF+  E    I PD CIDCG C P CPV AI     
Sbjct: 1  MTYVVTDQCSGCRYTECVTVCPVECFHIDEEMTYIDPDNCIDCGGCAPVCPVGAIHASYL 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
               + W++IN   A + P + ++   LP A +
Sbjct: 61 LPADKQEWIEINRRRAAETPVVASRLPPLPGAEE 94


>gi|111025066|ref|YP_707486.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|110824045|gb|ABG99328.1| ferredoxin [Rhodococcus jostii RHA1]
          Length = 128

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ E CI      CVE CPVDC YEG   L IHPDECIDCG CEP CPV+AI    D
Sbjct: 1   MTYVIAEPCIDVMDRACVEECPVDCIYEGGRSLYIHPDECIDCGACEPVCPVEAIYYEAD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E +   N+ +        +    +P  A   G      +  S +P
Sbjct: 61  LPARWEAFTDDNARFFHSPLPGASAALGMPGGAGKLGRLAADTELVSGHP 110


>gi|86750526|ref|YP_487022.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
 gi|86573554|gb|ABD08111.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris HaA2]
          Length = 101

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MTYVVT+NC  C++T+CV VCPV+CF+       I P+ CIDCG C P CPV AI PD  
Sbjct: 1  MTYVVTDNCKGCRYTECVTVCPVECFHVDAAMTYIDPENCIDCGGCAPACPVGAIAPDYR 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
               + W+ +N + A + P +T +   LP A  
Sbjct: 61 LPAHQKFWIDVNRKRAAETPVLTARLPPLPGADD 94


>gi|325675367|ref|ZP_08155051.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
 gi|325553338|gb|EGD23016.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
          Length = 564

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MAYVITQTC--CNDASCVSACPVNCIHPTPEEAEFATTEMLYIEPQACIDCGACVDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWP 78
          +AI P+ +    L+ + +IN++Y T+ P
Sbjct: 59 NAIFPEDQLSESLQRYREINADYYTRHP 86


>gi|320103065|ref|YP_004178656.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Isosphaera pallida ATCC 43644]
 gi|319750347|gb|ADV62107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Isosphaera
          pallida ATCC 43644]
          Length = 98

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +VVT  C  CK+TDCV VCPV+CFYEGE  L IHPDECIDC  C PECPV+AI  +  
Sbjct: 1  MAHVVTAPCFECKYTDCVVVCPVECFYEGEQMLYIHPDECIDCEACVPECPVEAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAA 91
               + ++ +N+E A   P IT  K  +   A
Sbjct: 61 VPADYKEFIALNAEKAPHLPVITQSKTPMEGPA 93


>gi|269961009|ref|ZP_06175378.1| Ferredoxin [Vibrio harveyi 1DA3]
 gi|269834228|gb|EEZ88318.1| Ferredoxin [Vibrio harveyi 1DA3]
          Length = 104

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +VVT+NCI CK+TDCV VCP D F+EG NF+ I+P ECIDCG+C  EC   AI  + E
Sbjct: 1  MAFVVTDNCIQCKYTDCVAVCPADAFHEGPNFMVINPIECIDCGLCVDECAAAAIFQEDE 60

Query: 61 --PGLELWLKINSEYATQWPNITTKKES 86
                ++ ++N+E A  WP  T  K +
Sbjct: 61 LPEDQVIYKELNAELAEIWPVQTEVKPA 88


>gi|254514874|ref|ZP_05126935.1| RecA DNA recombination protein [gamma proteobacterium NOR5-3]
 gi|219677117|gb|EED33482.1| RecA DNA recombination protein [gamma proteobacterium NOR5-3]
          Length = 90

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           +EVCPVDCFYEG NFL IHPDECIDC +CEPECPVDAI  + E     +++L++N+E A 
Sbjct: 1   MEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVDAIFSEDELPADQQVFLELNAELAE 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKY 100
            WP IT  K +   A +  G   K 
Sbjct: 61  VWPCITEMKPAPEDAEEWAGKPGKL 85


>gi|88856142|ref|ZP_01130803.1| ferredoxin [marine actinobacterium PHSC20C1]
 gi|88814710|gb|EAR24571.1| ferredoxin [marine actinobacterium PHSC20C1]
          Length = 111

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDLKDRACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + K N E+            S P  A   GV  K        P G  +
Sbjct: 61  LPDKWADYYKANVEFFDLLEV------SSPGGAAKVGVIHKDHALIVALPEGGGS 109


>gi|118470782|ref|YP_885518.1| ferredoxin FdxA [Mycobacterium smegmatis str. MC2 155]
 gi|118172069|gb|ABK72965.1| putative ferredoxin FdxA [Mycobacterium smegmatis str. MC2 155]
          Length = 114

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIGRPCVDVKDRACVDECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYAT-QWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
               L+ + + N+++ T   P       S   AAK+ GV        +  P   +
Sbjct: 61  LPEDLQPYQEENAKFFTDVLPGRAQPLGSPGGAAKL-GVVDADTPMVAELPPQGD 114


>gi|120405980|ref|YP_955809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958798|gb|ABM15803.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 559

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 20/123 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVYACPVNCIHPTPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53  DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            AI P+T   P    ++++N+ +  +      +   LP  +K+  V +  E      PGG
Sbjct: 59  GAIAPETGLAPDQLPFVELNAAFYPK------RDGKLPPTSKLAPVLEAPE--VRRRPGG 110

Query: 111 KNT 113
             T
Sbjct: 111 PLT 113


>gi|312140996|ref|YP_004008332.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311890335|emb|CBH49653.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 578

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M YV+T+ C  C    CV  CPV+C +             L I P  CIDCG C   CPV
Sbjct: 15  MAYVITQTC--CNDASCVSACPVNCIHPTPEEAEFATTEMLYIEPQACIDCGACVDACPV 72

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWP 78
           +AI P+ +    L+ + +IN++Y T+ P
Sbjct: 73  NAIFPEDQLSESLQRYREINADYYTRHP 100


>gi|289555333|ref|ZP_06444543.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 605]
 gi|289439965|gb|EFD22458.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 605]
          Length = 550

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWPNI-----TTKKESLPSAAK 92
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA+
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAE 105


>gi|91774917|ref|YP_544673.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus
          flagellatus KT]
 gi|91708904|gb|ABE48832.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
          flagellatus KT]
          Length = 101

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MT VVT+NC+ C+ T+CV  CPV  F  G   L I  + CIDCG C P+CPV AI    D
Sbjct: 1  MTTVVTDNCLKCRFTECVTSCPVSAFRAGPEMLYIDSETCIDCGACVPKCPVQAIYEDLD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
              +  W+ IN+  A  WP IT K   L  A    
Sbjct: 61 LPEDMLQWIDINASEAKLWPKITAKDVPLEGALDRK 96


>gi|167563248|ref|ZP_02356164.1| ferredoxin [Burkholderia oklahomensis EO147]
          Length = 95

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 4/90 (4%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           + VCPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   D       ++ +N+E A 
Sbjct: 1   MAVCPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAADDLPDDQTHFVALNAELAR 60

Query: 76  Q--WPNITTKKESLPSAAKMDGVKQKYEKY 103
              WP IT KK +LP  A    VK K ++ 
Sbjct: 61  HPSWPRITGKKSALPDHATWTDVKGKLDQL 90


>gi|15828144|ref|NP_302407.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae TN]
 gi|221230621|ref|YP_002504037.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923]
 gi|17432976|sp|O33064|FPRB_MYCLE RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|2440106|emb|CAB16679.1| ferredoxin [Mycobacterium leprae]
 gi|13093698|emb|CAC31089.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae]
 gi|219933728|emb|CAR72231.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923]
          Length = 555

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M Y++T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPYIITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
            AI  DT   P    +++IN+ Y    P        LP  +K+  V    + +    P
Sbjct: 59  GAIASDTRLAPKQLPFIEINASYYPARPI----DLKLPPTSKLAPVIPAAQVHVRRRP 112


>gi|167461806|ref|ZP_02326895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 150

 Score =  114 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +V+T  CI  K  DCV VCPVDC +EGE+   I PD CI+CG CE ECPV AI  + +
Sbjct: 74  MAFVITSPCIGEKAADCVSVCPVDCIHEGEDQYYIDPDVCIECGACEVECPVTAIFHEDD 133

Query: 61  PGLEL--WLKINSEYAT 75
              E   +++ N  +  
Sbjct: 134 VPDEEKSFIEKNRAFFA 150


>gi|226361233|ref|YP_002779011.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239718|dbj|BAH50066.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 561

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV VCPVDC +   N         L I P  CIDCG C   CPV
Sbjct: 1  MAHVVTQSC--CNDASCVAVCPVDCIHPTPNEPGYGRAEMLYIDPVGCIDCGACIDACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAA 91
          DAI PD +  P    + +IN+ Y      +    E   +A 
Sbjct: 59 DAILPDYDLTPETARYEEINAAYYLNREPLAPAVEPPGAAE 99


>gi|118467681|ref|YP_889914.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium smegmatis
          str. MC2 155]
 gi|118168968|gb|ABK69864.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          smegmatis str. MC2 155]
          Length = 557

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 18/106 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I PD C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPDACVDCGACVSACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           AI PDT  EP    +++IN+ +  +      ++  LP  +K+  V
Sbjct: 59 GAIAPDTRLEPRQLPFVEINAAFYPK------REGKLPPTSKLAPV 98


>gi|328887086|emb|CCA60325.1| Ferredoxin [Streptomyces venezuelae ATCC 10712]
          Length = 97

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 57/88 (64%), Gaps = 2/88 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVT+ CI CK+TDCV+VCPV CF+EG   L I+P+ECIDC  C  ECP +AI  D +
Sbjct: 1  MAYVVTDECIGCKYTDCVDVCPVSCFHEGPEMLYINPEECIDCNACVAECPPEAIWADVD 60

Query: 61 PGLE--LWLKINSEYATQWPNITTKKES 86
             +   W++IN E + ++P +   +  
Sbjct: 61 LPEDKLQWIEINGEMSAKYPVLHESRGP 88


>gi|258653795|ref|YP_003202951.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258557020|gb|ACV79962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 114

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ E CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV AI  + +
Sbjct: 1   MTYVIAEPCIDVLDRACVEECPVDCIYEGARALYIHPDECVDCGACEPVCPVQAIFYEDD 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E +   N+ + T      ++  + P  A   G         + +P
Sbjct: 61  VPNQWEAFTDDNARFFTDTLPGRSQPVASPGGATTIGRLGVDTNLVAAHP 110


>gi|296169651|ref|ZP_06851269.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295895648|gb|EFG75344.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 563

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTEPG--LELWLKINSEYATQWP 78
           AI PDT        +++IN+ +  + P
Sbjct: 59 GAIAPDTRLDSKQLPFVEINASFYPERP 86


>gi|119714164|ref|YP_919306.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119526073|gb|ABL79443.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 117

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + C+      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIGQPCVDVMDRGCVDECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
               L  +L  N+ + ++     +     P  A   G      +  +  P
Sbjct: 61  LPGHLTPYLADNALFFSETLEGRSAPVGSPGGASKLGALGADTRLVAGLP 110


>gi|119714883|ref|YP_921848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119535544|gb|ABL80161.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 544

 Score =  114 bits (285), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPV 52
          MT+V+T++C  C+   CV VCPV C         +E    L I P  CIDCG C   CPV
Sbjct: 1  MTFVITQSC--CEDAACVTVCPVQCIRPRPGDPDFESTEQLYIDPSSCIDCGACATACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWP 78
          DAI P     P L  +  +N+EY    P
Sbjct: 59 DAIYPGDALPPSLSTFSAVNAEYFEARP 86


>gi|317125122|ref|YP_004099234.1| ferredoxin FdxA [Intrasporangium calvum DSM 43043]
 gi|315589210|gb|ADU48507.1| putative ferredoxin FdxA [Intrasporangium calvum DSM 43043]
          Length = 118

 Score =  113 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 3/94 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   CI  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGSPCIDVKDRACVEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWP-NITTKKESLPSAA 91
            P LE +L+ N+++  +          S   AA
Sbjct: 61 LPPDLEPYLQDNADFFEETMAGQAEPLGSPGGAA 94


>gi|183982094|ref|YP_001850385.1| ferredoxin FdxA_1 [Mycobacterium marinum M]
 gi|183175420|gb|ACC40530.1| ferredoxin FdxA_1 [Mycobacterium marinum M]
          Length = 115

 Score =  113 bits (284), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIGKPCIDVMDRACVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNPGGKNT 113
              EL   +    A     +  +   L  P  A   G         + +P   + 
Sbjct: 61  LPQELHPHLADNVAFFTETLPGRDGPLGSPGGAAKIGRLGVDTPLVAGHPQAADA 115


>gi|314922814|gb|EFS86645.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL001PA1]
          Length = 135

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 91  PGDQEKFLDINAEFFNE 107


>gi|300692275|ref|YP_003753270.1| ferredoxin II (FdII) [Ralstonia solanacearum PSI07]
 gi|299079335|emb|CBJ52007.1| Ferredoxin II (FdII) [Ralstonia solanacearum PSI07]
          Length = 103

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/100 (48%), Positives = 56/100 (56%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           MTYVVT+ C  C++T+CV VCPV CF+  +    I PD CIDCG C P CPV AI  D  
Sbjct: 1   MTYVVTDLCTGCRYTECVTVCPVACFHLDDQMTYIDPDNCIDCGGCAPACPVGAIVADYL 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
                  WL IN E A Q P IT+K   LP A  +   K 
Sbjct: 61  LPADKAAWLGINRERAAQTPVITSKLPPLPGAPDLPEHKD 100


>gi|226359497|ref|YP_002777274.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226237981|dbj|BAH48329.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 128

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ E CI      CVE CPVDC YEG   L IHPDECIDCG CEP CPV+AI  + +
Sbjct: 1   MTYVIAEPCIDVLDRACVEECPVDCIYEGGRSLYIHPDECIDCGACEPVCPVEAIFYEDD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  +   N+ +        +    +P  A   G      +  S  P     
Sbjct: 61  LPARWVAFTDDNARFFHSPLPGASAALGMPGGAGKLGPLAADTELVSGYPPSGPA 115


>gi|34581123|ref|ZP_00142603.1| ferredoxin [Rickettsia sibirica 246]
 gi|28262508|gb|EAA26012.1| ferredoxin [Rickettsia sibirica 246]
          Length = 127

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 7/90 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
          MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+P+ECIDCGVC P+CP+ AIK
Sbjct: 1  MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPNECIDCGVCVPDCPIGAIK 60

Query: 57 PDTEPGLELWLKINSEYATQ--WPNITTKK 84
          P++ PGL  W++   ++     W NIT KK
Sbjct: 61 PES-PGLIEWVERAKDFIENKGWKNITKKK 89


>gi|311111810|ref|YP_003983032.1| ferredoxin [Rothia dentocariosa ATCC 17931]
 gi|310943304|gb|ADP39598.1| ferredoxin [Rothia dentocariosa ATCC 17931]
          Length = 160

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 55  MTYVIALPCVDVKDRACVEECPVDCIYEGDRTLYIHPDECVDCGACEPVCPVEAIYYEDD 114

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  ++  N+E+            S   AAKM G   K   + +  P   
Sbjct: 115 VPEEWSEYITANAEFFDDL-------GSPGGAAKM-GPTGKDVPFIAALPPQG 159


>gi|119961114|ref|YP_948508.1| ferredoxin [Arthrobacter aurescens TC1]
 gi|119947973|gb|ABM06884.1| ferredoxin [Arthrobacter aurescens TC1]
          Length = 132

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 26  TYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDDT 85

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                 + K N E+            S   AAK+ G   K   Y +  P
Sbjct: 86  PEEWADYYKANVEFFDDL-------GSPGGAAKI-GNTGKDHPYIAALP 126


>gi|54024557|ref|YP_118799.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54016065|dbj|BAD57435.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 554

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C  C    CV  CPVDC               L I P+ CIDCG C   CPV
Sbjct: 1  MAYVITQRC--CNDASCVAECPVDCIRPRPEDPEFTSAEMLYIDPETCIDCGACFEACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWPNIT 81
           A+  + E   +L  + +IN+++  + P  T
Sbjct: 59 GAVYAEDELPAQLDRYREINADWFARHPMTT 89


>gi|317509391|ref|ZP_07967010.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252314|gb|EFV11765.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 548

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 28/113 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVVTQSC--CSDGSCVFACPVNCIHPTPDEPDFLTAEMLHIDPAACVDCGACVDACPV 58

Query: 53  DAIKPDTE--PGLELWLKINSEYA-----TQW-----------PNITTKKESL 87
           +AI PDT+  P    +L++N+ Y       +W           P+I  ++  L
Sbjct: 59  EAIVPDTKLAPKQLPFLELNASYFPKGGRKKWYSPMLAPIPEAPHIKARRAPL 111


>gi|296122862|ref|YP_003630640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296015202|gb|ADG68441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 94

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT+VV E C  CK+TDCV VCPV+CF EGE+ L IHP+ECIDC  C PECP  AI  +  
Sbjct: 1  MTHVVAEPCFNCKYTDCVVVCPVECFKEGESMLFIHPEECIDCEACVPECPPQAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLP 88
                 +LK+N+E + Q P IT KKE L 
Sbjct: 61 LPAQWADYLKLNAEMSEQCPPITEKKEPLG 90


>gi|117927707|ref|YP_872258.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acidothermus cellulolyticus 11B]
 gi|117648170|gb|ABK52272.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Acidothermus cellulolyticus 11B]
          Length = 117

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCIDVMDRACVEECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAK 92
                ++ + N+ +     P       S   A+K
Sbjct: 61 LPEQWTVYREDNAAFFHETLPGRDAPLGSPGGASK 95


>gi|306792261|ref|ZP_07430563.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           SUMu005]
 gi|308339184|gb|EFP28035.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           SUMu005]
          Length = 575

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWPNI-----TTKKESLPSAAK 92
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA+
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAE 105


>gi|15608026|ref|NP_215401.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium tuberculosis
           H37Rv]
 gi|15840300|ref|NP_335337.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31792074|ref|NP_854567.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium bovis
           AF2122/97]
 gi|121636809|ref|YP_977032.1| putative NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660663|ref|YP_001282186.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           tuberculosis H37Ra]
 gi|148822094|ref|YP_001286848.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           F11]
 gi|167968347|ref|ZP_02550624.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           H37Ra]
 gi|215402685|ref|ZP_03414866.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|215410472|ref|ZP_03419280.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426152|ref|ZP_03424071.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|215429743|ref|ZP_03427662.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|218752551|ref|ZP_03531347.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|219556751|ref|ZP_03535827.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|224989280|ref|YP_002643967.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253800092|ref|YP_003033093.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231194|ref|ZP_04924521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           C]
 gi|254363817|ref|ZP_04979863.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254549863|ref|ZP_05140310.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185781|ref|ZP_05763255.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|260199906|ref|ZP_05767397.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|260204088|ref|ZP_05771579.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289442296|ref|ZP_06432040.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|289446451|ref|ZP_06436195.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289568850|ref|ZP_06449077.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|289573512|ref|ZP_06453739.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289744616|ref|ZP_06503994.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|289749408|ref|ZP_06508786.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|289752941|ref|ZP_06512319.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|289761017|ref|ZP_06520395.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|294996366|ref|ZP_06802057.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           210]
 gi|297633403|ref|ZP_06951183.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730388|ref|ZP_06959506.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN R506]
 gi|298524378|ref|ZP_07011787.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657715|ref|ZP_07814595.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037133|sp|P65528|FPRB_MYCTU RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|54037134|sp|P65529|FPRB_MYCBO RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|1314025|emb|CAA97393.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
           REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880462|gb|AAK45151.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31617661|emb|CAD93771.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
           REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
           [Mycobacterium bovis AF2122/97]
 gi|121492456|emb|CAL70924.1| Probable nadph:adrenodoxin oxidoreductase fprB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124600253|gb|EAY59263.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           C]
 gi|134149331|gb|EBA41376.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148504815|gb|ABQ72624.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           tuberculosis H37Ra]
 gi|148720621|gb|ABR05246.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           F11]
 gi|224772393|dbj|BAH25199.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321595|gb|ACT26198.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 1435]
 gi|289415215|gb|EFD12455.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|289419409|gb|EFD16610.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289537943|gb|EFD42521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289542604|gb|EFD46252.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|289685144|gb|EFD52632.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|289689995|gb|EFD57424.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|289693528|gb|EFD60957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|289708523|gb|EFD72539.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|298494172|gb|EFI29466.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|323720595|gb|EGB29673.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904895|gb|EGE51828.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           W-148]
 gi|328459830|gb|AEB05253.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 4207]
          Length = 575

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWPNI-----TTKKESLPSAAK 92
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA+
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAE 105


>gi|148822393|ref|YP_001287147.1| ferredoxin fdxC [Mycobacterium tuberculosis F11]
 gi|289744922|ref|ZP_06504300.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|148720920|gb|ABR05545.1| ferredoxin fdxC [Mycobacterium tuberculosis F11]
 gi|289685450|gb|EFD52938.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|323720340|gb|EGB29436.1| ferredoxin fdxC [Mycobacterium tuberculosis CDC1551A]
          Length = 126

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 20  TYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDDV 79

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                 + +IN+++  +         S   AAK+   +   +      P  ++ 
Sbjct: 80  PEQWSHYTQINADFFAEL-------GSPGGAAKVGMTENDPQAVKDLAPQSEDA 126


>gi|167570432|ref|ZP_02363306.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 93

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 4/87 (4%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYATQ-- 76
           CPVDCF+EG NFL I PDECIDC +CEPECP+DAI+   D       ++ +N+E A    
Sbjct: 2   CPVDCFHEGPNFLVIDPDECIDCALCEPECPIDAIRAADDLPDDQTHFVALNAELARHPS 61

Query: 77  WPNITTKKESLPSAAKMDGVKQKYEKY 103
           WP IT KK +LP  A    VK K ++ 
Sbjct: 62  WPRITGKKSALPDHATWTDVKGKLDQL 88


>gi|313763939|gb|EFS35303.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA1]
 gi|313771530|gb|EFS37496.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL074PA1]
 gi|313808190|gb|EFS46664.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA2]
 gi|313811344|gb|EFS49058.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA1]
 gi|313812527|gb|EFS50241.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA1]
 gi|313814934|gb|EFS52648.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA1]
 gi|313818956|gb|EFS56670.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA2]
 gi|313820786|gb|EFS58500.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA1]
 gi|313822450|gb|EFS60164.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA2]
 gi|313825755|gb|EFS63469.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA1]
 gi|313830903|gb|EFS68617.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL007PA1]
 gi|313833330|gb|EFS71044.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL056PA1]
 gi|314914976|gb|EFS78807.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA4]
 gi|314918703|gb|EFS82534.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA1]
 gi|314920506|gb|EFS84337.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA3]
 gi|314932180|gb|EFS96011.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL067PA1]
 gi|314954553|gb|EFS98959.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA1]
 gi|314958650|gb|EFT02752.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA1]
 gi|314959746|gb|EFT03848.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA2]
 gi|314968248|gb|EFT12347.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA1]
 gi|314973790|gb|EFT17886.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA1]
 gi|314976441|gb|EFT20536.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL045PA1]
 gi|314979128|gb|EFT23222.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA2]
 gi|314983280|gb|EFT27372.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA1]
 gi|314986685|gb|EFT30777.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA2]
 gi|314989427|gb|EFT33518.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA3]
 gi|315080151|gb|EFT52127.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL078PA1]
 gi|315084033|gb|EFT56009.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA2]
 gi|315085234|gb|EFT57210.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA3]
 gi|315089149|gb|EFT61125.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA1]
 gi|315096565|gb|EFT68541.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL038PA1]
 gi|315098973|gb|EFT70949.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA2]
 gi|315100787|gb|EFT72763.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA1]
 gi|315107273|gb|EFT79249.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA1]
 gi|315108004|gb|EFT79980.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA2]
 gi|327326814|gb|EGE68597.1| ferredoxin [Propionibacterium acnes HL096PA2]
 gi|327330489|gb|EGE72236.1| ferredoxin [Propionibacterium acnes HL096PA3]
 gi|327442984|gb|EGE89638.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA1]
 gi|327445106|gb|EGE91760.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA2]
 gi|327446920|gb|EGE93574.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA2]
 gi|327450087|gb|EGE96741.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA3]
 gi|327455358|gb|EGF02013.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA2]
 gi|328752501|gb|EGF66117.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL020PA1]
 gi|328752753|gb|EGF66369.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA1]
 gi|328759326|gb|EGF72942.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA2]
 gi|328760188|gb|EGF73761.1| ferredoxin [Propionibacterium acnes HL099PA1]
          Length = 135

 Score =  112 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 91  PGDQEKFLDINAEFFNE 107


>gi|314966245|gb|EFT10344.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA2]
 gi|314980771|gb|EFT24865.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA3]
 gi|315090258|gb|EFT62234.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA4]
 gi|315093409|gb|EFT65385.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL060PA1]
 gi|315102964|gb|EFT74940.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA2]
 gi|327327026|gb|EGE68807.1| ferredoxin [Propionibacterium acnes HL103PA1]
 gi|327331132|gb|EGE72872.1| ferredoxin [Propionibacterium acnes HL097PA1]
          Length = 135

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 91  PGDQEKFLDINAEFFNE 107


>gi|215410806|ref|ZP_03419614.1| ferredoxin fdxC [Mycobacterium tuberculosis 94_M4241A]
 gi|298524675|ref|ZP_07012084.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298494469|gb|EFI29763.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 108

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + +IN+++  +         S   AAK+   +   +      P  +N 
Sbjct: 61  VPEQWSHYTQINADFFAEL-------GSPGGAAKVGMTENDPQAVKDLAPQSENA 108


>gi|126437410|ref|YP_001073101.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|126237210|gb|ABO00611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 561

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFATAEMLYIDPAACVDCGACVSACPV 58

Query: 53  DAIKPD--TEPGLELWLKINSEYATQWP-----NITTKKESLPSAAKMDGVKQ 98
            AI P+         ++++N+ +    P       T+K   +P A  +     
Sbjct: 59  GAIAPEATLTDSQLPFVELNAAFYPPRPPDEKVPPTSKLAPVPDAPVVRSRPD 111


>gi|108801425|ref|YP_641622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119870578|ref|YP_940530.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|108771844|gb|ABG10566.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119696667|gb|ABL93740.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
          Length = 561

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFATAEMLYIDPAACVDCGACVSACPV 58

Query: 53  DAIKPD--TEPGLELWLKINSEYATQWP-----NITTKKESLPSAAKMDGVKQ 98
            AI P+         ++++N+ +    P       T+K   +P A  +     
Sbjct: 59  GAIAPEATLTDSQLPFVELNAAFYPPRPPDEKVPPTSKLAPVPDAPVVRSRPD 111


>gi|15608317|ref|NP_215693.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Rv]
 gi|15840620|ref|NP_335657.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31792371|ref|NP_854864.1| ferredoxin FdxC [Mycobacterium bovis AF2122/97]
 gi|121637109|ref|YP_977332.1| putative ferredoxin fdxC [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660965|ref|YP_001282488.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Ra]
 gi|167966778|ref|ZP_02549055.1| ferredoxin fdxC [Mycobacterium tuberculosis H37Ra]
 gi|215403016|ref|ZP_03415197.1| ferredoxin fdxC [Mycobacterium tuberculosis 02_1987]
 gi|215430060|ref|ZP_03427979.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|215445354|ref|ZP_03432106.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|218752871|ref|ZP_03531667.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|219557068|ref|ZP_03536144.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|224989582|ref|YP_002644269.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799779|ref|YP_003032780.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 1435]
 gi|254231445|ref|ZP_04924772.1| ferredoxin fdxC [Mycobacterium tuberculosis C]
 gi|254364080|ref|ZP_04980126.1| ferredoxin fdxC [Mycobacterium tuberculosis str. Haarlem]
 gi|254550183|ref|ZP_05140630.1| ferredoxin fdxC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186110|ref|ZP_05763584.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|260200225|ref|ZP_05767716.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|260204430|ref|ZP_05771921.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289442611|ref|ZP_06432355.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|289446767|ref|ZP_06436511.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|289555034|ref|ZP_06444244.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 605]
 gi|289569181|ref|ZP_06449408.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|289573837|ref|ZP_06454064.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289749720|ref|ZP_06509098.1| LOW QUALITY PROTEIN: ferredoxin fdxC [Mycobacterium tuberculosis
           T92]
 gi|289753247|ref|ZP_06512625.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|289757273|ref|ZP_06516651.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|289761323|ref|ZP_06520701.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|294993365|ref|ZP_06799056.1| ferredoxin fdxC [Mycobacterium tuberculosis 210]
 gi|297633725|ref|ZP_06951505.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 4207]
 gi|297730711|ref|ZP_06959829.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN R506]
 gi|306775348|ref|ZP_07413685.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu001]
 gi|306781745|ref|ZP_07420082.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu002]
 gi|306783896|ref|ZP_07422218.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu003]
 gi|306788262|ref|ZP_07426584.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu004]
 gi|306792587|ref|ZP_07430889.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu005]
 gi|306796993|ref|ZP_07435295.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu006]
 gi|306802871|ref|ZP_07439539.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu008]
 gi|306807053|ref|ZP_07443721.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu007]
 gi|306967258|ref|ZP_07479919.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu009]
 gi|306971442|ref|ZP_07484103.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu010]
 gi|307079169|ref|ZP_07488339.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu011]
 gi|307083730|ref|ZP_07492843.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu012]
 gi|313658042|ref|ZP_07814922.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN V2475]
 gi|2695961|emb|CAA15854.1| PROBABLE FERREDOXIN FDXC [Mycobacterium tuberculosis H37Rv]
 gi|13880802|gb|AAK45471.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31617959|emb|CAD94071.1| PROBABLE FERREDOXIN FDXC [Mycobacterium bovis AF2122/97]
 gi|121492756|emb|CAL71227.1| Probable ferredoxin fdxC [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600504|gb|EAY59514.1| ferredoxin fdxC [Mycobacterium tuberculosis C]
 gi|134149594|gb|EBA41639.1| ferredoxin fdxC [Mycobacterium tuberculosis str. Haarlem]
 gi|148505117|gb|ABQ72926.1| ferredoxin FdxC [Mycobacterium tuberculosis H37Ra]
 gi|224772695|dbj|BAH25501.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321282|gb|ACT25885.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 1435]
 gi|289415530|gb|EFD12770.1| ferredoxin fdxC [Mycobacterium tuberculosis T46]
 gi|289419725|gb|EFD16926.1| ferredoxin fdxC [Mycobacterium tuberculosis CPHL_A]
 gi|289439666|gb|EFD22159.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 605]
 gi|289538268|gb|EFD42846.1| ferredoxin fdxC [Mycobacterium tuberculosis K85]
 gi|289542935|gb|EFD46583.1| ferredoxin fdxC [Mycobacterium tuberculosis T17]
 gi|289690307|gb|EFD57736.1| LOW QUALITY PROTEIN: ferredoxin fdxC [Mycobacterium tuberculosis
           T92]
 gi|289693834|gb|EFD61263.1| ferredoxin fdxC [Mycobacterium tuberculosis EAS054]
 gi|289708829|gb|EFD72845.1| ferredoxin fdxC [Mycobacterium tuberculosis GM 1503]
 gi|289712837|gb|EFD76849.1| ferredoxin fdxC [Mycobacterium tuberculosis T85]
 gi|308216149|gb|EFO75548.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu001]
 gi|308325500|gb|EFP14351.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu002]
 gi|308331334|gb|EFP20185.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu003]
 gi|308335151|gb|EFP24002.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu004]
 gi|308338958|gb|EFP27809.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu005]
 gi|308342625|gb|EFP31476.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu006]
 gi|308346514|gb|EFP35365.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu007]
 gi|308350434|gb|EFP39285.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu008]
 gi|308355081|gb|EFP43932.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu009]
 gi|308359036|gb|EFP47887.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu010]
 gi|308362963|gb|EFP51814.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu011]
 gi|308366614|gb|EFP55465.1| ferredoxin fdxC [Mycobacterium tuberculosis SUMu012]
 gi|326902801|gb|EGE49734.1| ferredoxin fdxC [Mycobacterium tuberculosis W-148]
 gi|328459524|gb|AEB04947.1| ferredoxin fdxC [Mycobacterium tuberculosis KZN 4207]
          Length = 108

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + +IN+++  +         S   AAK+   +   +      P  ++ 
Sbjct: 61  VPEQWSHYTQINADFFAEL-------GSPGGAAKVGMTENDPQAVKDLAPQSEDA 108


>gi|296270986|ref|YP_003653618.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermobispora bispora DSM 43833]
 gi|296093773|gb|ADG89725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobispora
           bispora DSM 43833]
          Length = 108

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACVEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                + + K N E+              P  A   G   K     +  P    
Sbjct: 61  LPEQWKDFYKANVEFFDDL--------GSPGGASKLGKINKDHPIVAALPPQGG 106


>gi|269125402|ref|YP_003298772.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268310360|gb|ACY96734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomonospora curvata DSM 43183]
          Length = 107

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIEECPVDCIYEGKRQLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                + + K+N+E+              P  A   G   K   Y +  P
Sbjct: 61  IPDQWKDFYKVNAEFFDDL--------GSPGGASKVGKIDKDHPYVAALP 102


>gi|294631226|ref|ZP_06709786.1| ferredoxin [Streptomyces sp. e14]
 gi|292834559|gb|EFF92908.1| ferredoxin [Streptomyces sp. e14]
          Length = 143

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 39  TYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDV 98

Query: 60  EPGLELWLKINSEYATQ 76
               + + K N E+  +
Sbjct: 99  PEEWKDYYKANVEFFDE 115


>gi|118616138|ref|YP_904470.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
           Agy99]
 gi|118568248|gb|ABL02999.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
           Agy99]
          Length = 561

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVTCVDCGACVSACPV 58

Query: 53  DAIKPDTEPG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
            AI PD+        +++IN+ Y  Q        E LP  +K+  V
Sbjct: 59  GAIAPDSRLDSKQLPFVEINASYYPQR----QGGEKLPPTSKLAPV 100


>gi|284989663|ref|YP_003408217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062908|gb|ADB73846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 108

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+T+ C+      C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVITQACVDVLDKACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                + +   N E+ +            P  A   G   K     +  P   
Sbjct: 61  VPDKWKDFYNANVEFFSDL--------GSPGGAAKTGKIGKDHPLVAALPPQG 105


>gi|41406923|ref|NP_959759.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395273|gb|AAS03142.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGV 96
            AI PD     +   +++IN+ +  + P      + LP  +K+  V
Sbjct: 59  GAIAPDNRLDDKQLPFVEINASFYPKRP----AGQKLPPTSKLAPV 100


>gi|313791594|gb|EFS39712.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA1]
          Length = 144

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 40  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 99

Query: 60  EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 100 PGDQEKFLDINAEFFNE 116


>gi|207743547|ref|YP_002259939.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|206594945|emb|CAQ61872.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
          Length = 91

 Score =  111 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D     + W+ IN+E A 
Sbjct: 1   MDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINAELAQ 60

Query: 76  Q-WPNITTKKESLPSAAKMDGVKQKYE 101
             WP+IT  K  LP A +   VK K +
Sbjct: 61  AGWPSITKTKSPLPEADQWKDVKDKEQ 87


>gi|50842114|ref|YP_055341.1| ferredoxin [Propionibacterium acnes KPA171202]
 gi|289425779|ref|ZP_06427533.1| putative ferredoxin [Propionibacterium acnes SK187]
 gi|289426708|ref|ZP_06428436.1| putative ferredoxin [Propionibacterium acnes J165]
 gi|295130202|ref|YP_003580865.1| ferredoxin family protein [Propionibacterium acnes SK137]
 gi|50839716|gb|AAT82383.1| ferredoxin [Propionibacterium acnes KPA171202]
 gi|289153722|gb|EFD02429.1| putative ferredoxin [Propionibacterium acnes SK187]
 gi|289160034|gb|EFD08210.1| putative ferredoxin [Propionibacterium acnes J165]
 gi|291377123|gb|ADE00978.1| ferredoxin family protein [Propionibacterium acnes SK137]
 gi|313802321|gb|EFS43547.1| putative ferredoxin [Propionibacterium acnes HL110PA2]
 gi|313828097|gb|EFS65811.1| putative ferredoxin [Propionibacterium acnes HL063PA2]
 gi|313839087|gb|EFS76801.1| putative ferredoxin [Propionibacterium acnes HL086PA1]
 gi|314962320|gb|EFT06421.1| putative ferredoxin [Propionibacterium acnes HL082PA1]
 gi|315077406|gb|EFT49466.1| putative ferredoxin [Propionibacterium acnes HL053PA2]
 gi|327455186|gb|EGF01841.1| putative ferredoxin [Propionibacterium acnes HL092PA1]
 gi|332675037|gb|AEE71853.1| ferredoxin [Propionibacterium acnes 266]
          Length = 106

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 61 LPGDQEKFLDINAEFFNE 78


>gi|296170897|ref|ZP_06852434.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894446|gb|EFG74190.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 118

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + CI      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPVDAI  + +
Sbjct: 1  MTYVIGKPCIDVMDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVDAIYYEDD 60

Query: 61 PGLE--LWLKINSE-YATQWPNITTKKESLPSAAKM 93
             E   +L  N+  +A   P       S   AAKM
Sbjct: 61 LPDELNPYLADNAAFFAETLPGRDAPLGSPGGAAKM 96


>gi|256397063|ref|YP_003118627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256363289|gb|ACU76786.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 109

 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 59/110 (53%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T    + + K N E+            S   A+KM G+ +K     S  P
Sbjct: 61  TPEQWKDYYKANVEFFDDL-------GSPGGASKM-GLIEKDHPLVSVLP 102


>gi|120405481|ref|YP_955310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958299|gb|ABM15304.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 107

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSAYTQINADFFVEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|315606086|ref|ZP_07881117.1| ferredoxin [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312368|gb|EFU60454.1| ferredoxin [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 113

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGERTLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  +L+ N+++  Q           P  A+  GV+   +   +  P
Sbjct: 61  LPDEWSDYLRANADFFNQL--------GSPGGAQKTGVQDYDDPMIAELP 102


>gi|269793446|ref|YP_003312901.1| ferredoxin [Sanguibacter keddieii DSM 10542]
 gi|269095631|gb|ACZ20067.1| ferredoxin [Sanguibacter keddieii DSM 10542]
          Length = 108

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 57/114 (50%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + K N E+            S   AAKM G   K        P G N
Sbjct: 61  VPDEWSEYYKANVEFFDDL-------GSPGGAAKM-GEIDKDHAVILALPAGIN 106


>gi|299067165|emb|CBJ38361.1| Ferredoxin (fdxA) [Ralstonia solanacearum CMR15]
          Length = 91

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 3/87 (3%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC  ECPV+AI    D     + W+ IN++ A 
Sbjct: 1   MDVCPVDCFREGPNFLTIDPDECIDCAVCVAECPVNAIYAEEDVPADQQKWIAINADLAQ 60

Query: 76  Q-WPNITTKKESLPSAAKMDGVKQKYE 101
             WP+IT  K  LP A +   VK K +
Sbjct: 61  AGWPSITKTKTPLPDAEEWKDVKDKEQ 87


>gi|282854408|ref|ZP_06263745.1| putative ferredoxin [Propionibacterium acnes J139]
 gi|282583861|gb|EFB89241.1| putative ferredoxin [Propionibacterium acnes J139]
 gi|328906846|gb|EGG26612.1| putative ferredoxin [Propionibacterium sp. P08]
          Length = 106

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 61 LPGDQEKFLDINAEFFNE 78


>gi|319949121|ref|ZP_08023214.1| putative ferredoxin reductase [Dietzia cinnamea P4]
 gi|319437231|gb|EFV92258.1| putative ferredoxin reductase [Dietzia cinnamea P4]
          Length = 551

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T+ C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQAC--CADASCVHACPVNCIHPTPDEPDFATAEMLYIDPVSCVDCGACVGACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEY 73
           AI P TE  P    +L+IN+E 
Sbjct: 59 GAIVPHTELAPEQHDFLQINAEL 81


>gi|238650840|ref|YP_002916695.1| ferredoxin [Rickettsia peacockii str. Rustic]
 gi|238624938|gb|ACR47644.1| ferredoxin [Rickettsia peacockii str. Rustic]
          Length = 108

 Score =  111 bits (278), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 66/90 (73%), Gaps = 7/90 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
          MTYVVT+ C+ CK+TDCVEVCPVDCFYEGE      L I+PDECIDCGVC P+CP+ AIK
Sbjct: 1  MTYVVTDECVKCKYTDCVEVCPVDCFYEGEREDDFMLVINPDECIDCGVCVPDCPIGAIK 60

Query: 57 PDTEPGLELWLKINSEYATQ--WPNITTKK 84
          P++ PGL  W++   ++     W NIT KK
Sbjct: 61 PES-PGLIEWVERAKDFIENKGWKNITKKK 89


>gi|254455104|ref|ZP_05068540.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
 gi|198263806|gb|EDY88077.1| 4Fe-4S ferredoxin, iron-sulfur binding [Octadecabacter antarcticus
           238]
          Length = 78

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/77 (58%), Positives = 59/77 (76%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L IHPDECIDCGVCEPECP DAI  DT+ G E WL++NS++A +WPNI  + E+L +A 
Sbjct: 1   MLVIHPDECIDCGVCEPECPADAILADTDQGAETWLELNSKFAAKWPNIIQQSEALANAE 60

Query: 92  KMDGVKQKYEKYFSPNP 108
           + DG++ K++KYFS  P
Sbjct: 61  EYDGMENKFDKYFSSKP 77


>gi|313836966|gb|EFS74680.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA2]
 gi|314929443|gb|EFS93274.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL044PA1]
 gi|314971472|gb|EFT15570.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA3]
          Length = 135

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+AI  +   
Sbjct: 31  TYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAIYYEDDL 90

Query: 60  EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 91  PGDQEKFLDINAEFFNE 107


>gi|315443225|ref|YP_004076104.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|315261528|gb|ADT98269.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 107

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSSYTQINADFFAEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|302536699|ref|ZP_07289041.1| ferredoxin [Streptomyces sp. C]
 gi|302445594|gb|EFL17410.1| ferredoxin [Streptomyces sp. C]
          Length = 110

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
           T    + + K N E+  +           P  A   G+ ++   + +  P   N 
Sbjct: 61  TPEEWKDYYKANVEFFDEL--------GSPGGASKLGLIERDHPFVAALPADINA 107


>gi|72160895|ref|YP_288552.1| ferredoxin [Thermobifida fusca YX]
 gi|71914627|gb|AAZ54529.1| ferredoxin [Thermobifida fusca YX]
          Length = 106

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K+N E+  +           P  A   G   +     +  P   
Sbjct: 61  LPSEWSDFYKVNVEFFEEL--------GSPGGASKVGKIDRDHPLVAALPPQG 105


>gi|145222758|ref|YP_001133436.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145215244|gb|ABP44648.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 107

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++ T+         S   A+K+       +      P G++
Sbjct: 61  VPEQWSAYTQINADFFTEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|183984613|ref|YP_001852904.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
 gi|183177939|gb|ACC43049.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
          Length = 561

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVSACPV 58

Query: 53  DAIKPDTEPG--LELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
            AI PD+        +++IN+ Y  Q        E LP  +K+  V
Sbjct: 59  GAIAPDSRLDSKQLPFVEINASYYPQR----QGGEKLPPTSKLAPV 100


>gi|117929063|ref|YP_873614.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidothermus cellulolyticus 11B]
 gi|117649526|gb|ABK53628.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 108

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ + C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAQPCVDVKDRACVDECPVDCIYEGQRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                + + K+N E+              P  A   GV        +  P     
Sbjct: 61  LPDQWKDYYKVNVEFFEDL--------GSPGGASKVGVIDHDHPIVAALPPQGEA 107


>gi|326329869|ref|ZP_08196186.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325952336|gb|EGD44359.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 560

 Score =  111 bits (277), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +             L +    C+DCG C   CP 
Sbjct: 1  MPHVVTQSC--CADASCVVACPVNCIHPAPGEPGFGEAEMLYVDAKSCVDCGACVTACPA 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESL 87
          DAI P T    G + +L IN+EY   +P+      +L
Sbjct: 59 DAIVPHTTLSEGQKPFLAINAEYFEVFPHKDRTPLAL 95


>gi|240170645|ref|ZP_04749304.1| ferredoxin FdxA_1 [Mycobacterium kansasii ATCC 12478]
          Length = 118

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/116 (38%), Positives = 57/116 (49%), Gaps = 4/116 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + CI      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIGKPCIDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
               LE +   N+ +     P       S   AAK+ G         +  P   ++
Sbjct: 61  LPAELEPYRADNAAFFTETLPGRDEPLGSPGGAAKI-GPLGVDTPLVAAEPRADDS 115


>gi|331697009|ref|YP_004333248.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326951698|gb|AEA25395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 120

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACVDECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ-WPNITTKKESLPSAAK 92
                  L+ N+ + T   P       S   AAK
Sbjct: 61 LPDRWAAHLEDNAAFFTTALPGRAAPLGSPGGAAK 95


>gi|184200470|ref|YP_001854677.1| ferredoxin [Kocuria rhizophila DC2201]
 gi|183580700|dbj|BAG29171.1| 7Fe ferredoxin [Kocuria rhizophila DC2201]
          Length = 107

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACVEECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T      + K N E+            S   AAK+ G   K     +  P
Sbjct: 61  TPEEWAEYYKANVEFFDDL-------GSPGGAAKL-GNTHKDHPLIAALP 102


>gi|332671395|ref|YP_004454403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulomonas fimi ATCC 484]
 gi|332340433|gb|AEE47016.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cellulomonas
           fimi ATCC 484]
          Length = 108

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/110 (41%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N E+            S   AAKM G   K     +  P
Sbjct: 61  VPEQWSEYYKANVEFFDDL-------GSPGGAAKM-GEIDKDHPIIATLP 102


>gi|320094299|ref|ZP_08026090.1| ferredoxin [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978765|gb|EFW10317.1| ferredoxin [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 114

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  +L+ N+++ ++           P  A+  GV++  +   +  P
Sbjct: 61  LPDEWSDYLRANADFFSEL--------GSPGGAQRTGVQEYDDPMIAALP 102


>gi|145222311|ref|YP_001132989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium gilvum PYR-GCK]
 gi|145214797|gb|ABP44201.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium gilvum PYR-GCK]
          Length = 557

 Score =  110 bits (276), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 18/106 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           AI PD++  P    ++++N+ +  +      ++  LP  +K+  V
Sbjct: 59 GAIAPDSKLTPEQLPFVELNAAFYPK------REGKLPPTSKLAPV 98


>gi|257068295|ref|YP_003154550.1| ferredoxin [Brachybacterium faecium DSM 4810]
 gi|256559113|gb|ACU84960.1| ferredoxin [Brachybacterium faecium DSM 4810]
          Length = 109

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDRACVDECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           T      + K N E+            +   AAKM GV  K        P   N
Sbjct: 61  TPDQWAEYYKANVEFFDDL-------GAPGGAAKM-GVIDKDHPLIDALPPQPN 106


>gi|118462886|ref|YP_881360.1| ferredoxin [Mycobacterium avium 104]
 gi|254774861|ref|ZP_05216377.1| ferredoxin [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118164173|gb|ABK65070.1| ferredoxin [Mycobacterium avium 104]
          Length = 108

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  +  
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
            P    +L+IN+++ T+
Sbjct: 61 LPPEHSQYLQINADFFTE 78


>gi|309813204|ref|ZP_07706925.1| ferredoxin [Dermacoccus sp. Ellin185]
 gi|308432800|gb|EFP56711.1| ferredoxin [Dermacoccus sp. Ellin185]
          Length = 107

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           T      + K N E+            S   AAKM  +K+ +       P  ++
Sbjct: 61  TPEEWADYYKANVEFFDDL-------GSPGGAAKMGVIKKDHPIIAVLPPQNQD 107


>gi|108802249|ref|YP_642446.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119871402|ref|YP_941354.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|126438231|ref|YP_001073922.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|108772668|gb|ABG11390.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119697491|gb|ABL94564.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
 gi|126238031|gb|ABO01432.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 115

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIGKACVDVMDRSCVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKES---LPSAAKMDGVK 97
                   L  N+ +   +  +  + E       AAK+  V+
Sbjct: 61  LPADQREHLADNAAFF--FDTLAGRDEPLGSPGGAAKVGPVQ 100


>gi|188575948|ref|YP_001912877.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520400|gb|ACD58345.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 85

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNI 80
           +DCF+ G NFL I PDECIDC +CEPECP +AI P+     G E ++ +N+E A  WP +
Sbjct: 1   MDCFHVGPNFLVIDPDECIDCTLCEPECPANAIYPEDDVPAGQEGFVALNAELAKVWPVL 60

Query: 81  TTKKESLPSAAKMDGVKQKYEKY 103
           T ++E LP AA+ DG   K    
Sbjct: 61  TVRQEPLPDAAEWDGKPNKLPLL 83


>gi|41408137|ref|NP_960973.1| FdxC_1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396492|gb|AAS04356.1| FdxC_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 108

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  +  
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
            P    +L+IN+++ T+
Sbjct: 61 LPPEHSQYLQINADFFTE 78


>gi|315442745|ref|YP_004075624.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
          [Mycobacterium sp. Spyr1]
 gi|315261048|gb|ADT97789.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
          [Mycobacterium sp. Spyr1]
          Length = 557

 Score =  110 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 18/106 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVYACPVNCIHPSPDEPGFATAEMLYIDPVACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
           AI PD++  P    ++++N+ +  +      ++  LP  +K+  V
Sbjct: 59 GAIAPDSKLTPEQLPFVELNAAFYPK------REGKLPPTSKLAPV 98


>gi|182436183|ref|YP_001823902.1| putative ferredoxin [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|239944071|ref|ZP_04696008.1| putative ferredoxin [Streptomyces roseosporus NRRL 15998]
 gi|239990523|ref|ZP_04711187.1| putative ferredoxin [Streptomyces roseosporus NRRL 11379]
 gi|291447539|ref|ZP_06586929.1| 4Fe-4S binding domain containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|326776809|ref|ZP_08236074.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptomyces cf. griseus XylebKG-1]
 gi|178464699|dbj|BAG19219.1| putative ferredoxin [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|291350486|gb|EFE77390.1| 4Fe-4S binding domain containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|326657142|gb|EGE41988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Streptomyces cf. griseus XylebKG-1]
          Length = 106

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|118469543|ref|YP_889369.1| ferredoxin [Mycobacterium smegmatis str. MC2 155]
 gi|118170830|gb|ABK71726.1| ferredoxin [Mycobacterium smegmatis str. MC2 155]
          Length = 107

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSSYAQANADFFAEL-------GSPGGASKVGQTDNDPQAIKDLPPQGED 107


>gi|326384561|ref|ZP_08206240.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326196695|gb|EGD53890.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 116

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPVDAI  +  
Sbjct: 1  MTYVIALPCVDVMDRACVEECPVDCIYEGGRSLYIHPDECVDCGACEPVCPVDAIFYEDD 60

Query: 60 -EPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
                 +   N+++  T  P       S   AAK+  V
Sbjct: 61 LPDEWTPYTTDNADFFVTTLPGRDAPLGSPGGAAKIGPV 99


>gi|84494677|ref|ZP_00993796.1| ferredoxin [Janibacter sp. HTCC2649]
 gi|84384170|gb|EAQ00050.1| ferredoxin [Janibacter sp. HTCC2649]
          Length = 109

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/110 (43%), Positives = 58/110 (52%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDLKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T      + K N E+            S   AAKM G+  K     +  P
Sbjct: 61  TPEQWADYYKANVEFFDDL-------GSPGGAAKM-GLINKDHPLIADLP 102


>gi|254774193|ref|ZP_05215709.1| ferredoxin [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 108

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   AAK+   +   +      P G++
Sbjct: 61  VPDQWSQYTQINADFFAEL-------GSPGGAAKVGLTENDPQVVKDLPPQGED 107


>gi|239982109|ref|ZP_04704633.1| ferredoxin [Streptomyces albus J1074]
 gi|291453957|ref|ZP_06593347.1| ferredoxin [Streptomyces albus J1074]
 gi|291356906|gb|EFE83808.1| ferredoxin [Streptomyces albus J1074]
          Length = 106

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T    + + K N E+  +           P  A   G+ ++   + +  P
Sbjct: 61  TPEEWKDYYKANVEFFDEL--------GSPGGASKLGLIERDHPFIAELP 102


>gi|257054691|ref|YP_003132523.1| ferredoxin [Saccharomonospora viridis DSM 43017]
 gi|256584563|gb|ACU95696.1| ferredoxin [Saccharomonospora viridis DSM 43017]
          Length = 106

 Score =  109 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDKSCIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K N+++  +         S   AAK+  V    +      P G+
Sbjct: 61  VPDEWAAYTKANADFFEEL-------GSPGGAAKVGKVAHDPQWIKDLPPQGE 106


>gi|119952330|ref|YP_949931.1| putative ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
 gi|119951460|gb|ABM10370.1| putative Ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
          Length = 531

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 44/98 (44%), Gaps = 12/98 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          MTYV+T  C  C    C+ VCPV C               L I P  CIDCG C  ECPV
Sbjct: 1  MTYVITHGC--CSDASCIPVCPVQCIRPRPGDPDFTTAEQLYIDPATCIDCGACMDECPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEYATQWPNITTKKESLP 88
           AI P  D    L  +L +N++Y    P + +     P
Sbjct: 59 SAIHPEWDLPDELSEYLAVNADYYVDNPIVESSPVEPP 96


>gi|15827784|ref|NP_302047.1| ferredoxin [Mycobacterium leprae TN]
 gi|221230261|ref|YP_002503677.1| ferredoxin [Mycobacterium leprae Br4923]
 gi|13093336|emb|CAC30439.1| ferredoxin [Mycobacterium leprae]
 gi|219933368|emb|CAR71583.1| ferredoxin [Mycobacterium leprae Br4923]
          Length = 108

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN ++  +         S   AAK+   +   +   +  P G+ 
Sbjct: 61  VPEQWSHYTQINVDFFVEL-------GSPGGAAKVGMAENDPQVIKNLAPQGEG 107


>gi|311898212|dbj|BAJ30620.1| putative 7Fe ferredoxin [Kitasatospora setae KM-6054]
          Length = 108

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|296165553|ref|ZP_06848081.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
 gi|295899092|gb|EFG78570.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
          BAA-614]
          Length = 539

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 46/88 (52%), Gaps = 12/88 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          MTYV+T++C  CK   CV VCPVDC           G   L I P  CIDCG C   CPV
Sbjct: 1  MTYVITQSC--CKDASCVPVCPVDCIRPVGATGEITGTEMLYIDPVTCIDCGACVDACPV 58

Query: 53 DAI--KPDTEPGLELWLKINSEYATQWP 78
          DAI  + +  P LE +  INS Y    P
Sbjct: 59 DAIYYEEELPPELERFKDINSSYFEHHP 86


>gi|271969626|ref|YP_003343822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270512801|gb|ACZ91079.1| 4Fe-4S ferredoxin iron-sulfur binding domain- containing protein
           [Streptosporangium roseum DSM 43021]
          Length = 108

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                + + K N ++              P  A   G   K     +  P
Sbjct: 61  LPDQWKDFYKANVDFFEDL--------GSPGGASKVGKINKDHPVVAVLP 102


>gi|119718522|ref|YP_925487.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nocardioides sp. JS614]
 gi|119539183|gb|ABL83800.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nocardioides sp. JS614]
          Length = 114

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E CI  +   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGEPCIDVQDRACVDECPVDCIYEGARSLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINS-EYATQWPNITTKKESLPSAAK 92
              L+ +   N+  +A   P       S   AAK
Sbjct: 61 LPAELQPYQDDNARFFAEVLPGRDRPIGSPGGAAK 95


>gi|33597853|ref|NP_885496.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33602756|ref|NP_890316.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33574282|emb|CAE38615.1| ferredoxin [Bordetella parapertussis]
 gi|33577198|emb|CAE35755.1| ferredoxin [Bordetella bronchiseptica RB50]
          Length = 90

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYAT 75
           ++VCPVDCF EG NFL I PDECIDC VC PECP +AI    D       ++ +N E + 
Sbjct: 1   MDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEEDVPQDQVPFIALNVELSA 60

Query: 76  QWPNITTKKESLPSAAKMDGVKQKYE 101
           ++P+I+  K+ L  A + +GV+ K +
Sbjct: 61  EFPSISRAKKPLEDADQWNGVQDKLQ 86


>gi|21223505|ref|NP_629284.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|256785389|ref|ZP_05523820.1| ferredoxin [Streptomyces lividans TK24]
 gi|289769285|ref|ZP_06528663.1| ferredoxin [Streptomyces lividans TK24]
 gi|9967647|emb|CAC05765.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|289699484|gb|EFD66913.1| ferredoxin [Streptomyces lividans TK24]
          Length = 106

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|119715428|ref|YP_922393.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119536089|gb|ABL80706.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 108

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+++ C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVISQPCVDVKDRACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           T    + +   N  +            S   AAK+  +   +       P  ++
Sbjct: 61  TPEEWKAYYDANVHFFDDL-------GSPGGAAKLGEIDHDHPMIAELPPQNQD 107


>gi|254381842|ref|ZP_04997205.1| ferredoxin [Streptomyces sp. Mg1]
 gi|194340750|gb|EDX21716.1| ferredoxin [Streptomyces sp. Mg1]
          Length = 108

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|314925701|gb|EFS89532.1| putative ferredoxin [Propionibacterium acnes HL036PA3]
          Length = 106

 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CPV+A+  +  
Sbjct: 1  MTYVIGLPCVDVKDRACVEECPVDCIYEGERSLYIHPEECVDCGACEPVCPVEAVYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               E +L IN+E+  +
Sbjct: 61 LPGDQEKFLDINAEFFNE 78


>gi|239918039|ref|YP_002957597.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|281415782|ref|ZP_06247524.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|289705240|ref|ZP_06501639.1| putative ferredoxin [Micrococcus luteus SK58]
 gi|239839246|gb|ACS31043.1| ferredoxin [Micrococcus luteus NCTC 2665]
 gi|289557990|gb|EFD51282.1| putative ferredoxin [Micrococcus luteus SK58]
          Length = 108

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T      + K N E+            S   AAK+ G+  K     S  P
Sbjct: 61  TPDEWAEYYKANVEFFDDL-------GSPGGAAKL-GMIAKDHPIISALP 102


>gi|329939592|ref|ZP_08288893.1| ferredoxin [Streptomyces griseoaurantiacus M045]
 gi|329301162|gb|EGG45057.1| ferredoxin [Streptomyces griseoaurantiacus M045]
          Length = 106

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|262201358|ref|YP_003272566.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262084705|gb|ACY20673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 527

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDA 54
          +V+T++C  C    CV VCPV+C +           + L I P+ CIDCG C   CPVDA
Sbjct: 2  FVITQSC--CSDAACVSVCPVNCIHPTPEERGFGSSDILHIDPEACIDCGACADACPVDA 59

Query: 55 IKPDTEPG--LELWLKINSEYATQWPNI 80
          I P    G   ++++ IN+++    P +
Sbjct: 60 IYPADRLGTRDKVFIDINADFYKNNPAV 87


>gi|152965106|ref|YP_001360890.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151359623|gb|ABS02626.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 136

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ + C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +   
Sbjct: 30  TYVIAQPCVDVKDKACIEECPVDCIYEGNRSLYIQPDECVDCGACEPVCPVEAIYYEDDV 89

Query: 60  EPGLELWLKINSEYATQ 76
                 +   N E+   
Sbjct: 90  PEQWSAFTAANVEFFDT 106


>gi|311743743|ref|ZP_07717549.1| ferredoxin [Aeromicrobium marinum DSM 15272]
 gi|311312873|gb|EFQ82784.1| ferredoxin [Aeromicrobium marinum DSM 15272]
          Length = 107

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIAQPCVDLKDRACVDECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              E      +EY     +   K  S   AAK+  V   +    +  P  +
Sbjct: 61  TPAEW-----AEYYDANVHFFDKLGSPGGAAKLGVVDDDHPIIAALPPQNQ 106


>gi|118616772|ref|YP_905104.1| ferredoxin FdxC [Mycobacterium ulcerans Agy99]
 gi|118568882|gb|ABL03633.1| ferredoxin FdxC [Mycobacterium ulcerans Agy99]
          Length = 108

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++         K  S   AAK+   +   +      P G+
Sbjct: 61  VPEQWSQYTQINADFFA-------KLGSPGGAAKVGMTENDPQVVKDLPPQGE 106


>gi|41408824|ref|NP_961660.1| FdxA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118462225|ref|YP_882682.1| ferredoxin FdxA [Mycobacterium avium 104]
 gi|254775951|ref|ZP_05217467.1| putative ferredoxin FdxA [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|41397183|gb|AAS05043.1| FdxA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118163512|gb|ABK64409.1| putative ferredoxin FdxA [Mycobacterium avium 104]
          Length = 118

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI      CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIGKPCIDVMDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKIN-SEYATQWPNITTKKESLPSAAK 92
              L+  L  N + +A   P       S   AAK
Sbjct: 61 LPEDLKPHLADNEAFFAEPLPGRDAPLGSPGGAAK 95


>gi|296128848|ref|YP_003636098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cellulomonas
           flavigena DSM 20109]
 gi|296020663|gb|ADG73899.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cellulomonas
           flavigena DSM 20109]
          Length = 108

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  + + N  +  +         S   AAKM  +   +
Sbjct: 61  VPEQWSQYYEANVHFFDE-------IGSPGGAAKMGEIAHDH 95


>gi|226309118|ref|YP_002769078.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226188235|dbj|BAH36339.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 575

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 12/86 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLHIDPQACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQ 76
          DAI P+++      ++L IN+++  +
Sbjct: 59 DAIVPESKLTDPQRVFLSINADFYKE 84


>gi|318058410|ref|ZP_07977133.1| ferredoxin [Streptomyces sp. SA3_actG]
 gi|318080441|ref|ZP_07987773.1| ferredoxin [Streptomyces sp. SA3_actF]
          Length = 106

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|118618608|ref|YP_906940.1| ferredoxin FdxA_1 [Mycobacterium ulcerans Agy99]
 gi|118570718|gb|ABL05469.1| ferredoxin FdxA_1 [Mycobacterium ulcerans Agy99]
          Length = 115

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 56/116 (48%), Gaps = 4/116 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+ + CI      CVE CPVDC YEG   L IHPDE +DCG CEP CPV+AI  + +
Sbjct: 1   MTYVIGKPCIDVTDRACVEECPVDCIYEGGRSLYIHPDEFVDCGACEPVCPVEAIYYEDD 60

Query: 61  PGLE--LWLKIN-SEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
              E    L  N + +    P       S   AAK+  +        + +P   + 
Sbjct: 61  LPQELHPHLADNVAFFTETLPGRDGPLGSPGGAAKISRL-GVDTPLVAGHPQAADA 115


>gi|229491834|ref|ZP_04385655.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
 gi|229321515|gb|EEN87315.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
          Length = 575

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 12/86 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLHIDPQACVDCGACVSACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQ 76
          DAI P+++      ++L IN+++  +
Sbjct: 59 DAIVPESKLTDPQRVFLSINADFYKE 84


>gi|282865413|ref|ZP_06274465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
 gi|282559886|gb|EFB65436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
          Length = 106

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|256825753|ref|YP_003149713.1| ferredoxin [Kytococcus sedentarius DSM 20547]
 gi|256689146|gb|ACV06948.1| ferredoxin [Kytococcus sedentarius DSM 20547]
          Length = 107

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDKACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  +   N ++            S   AAKM G+  K     S  P   + 
Sbjct: 61  LPEEWADYYTANVDFFDDL-------GSPGGAAKM-GMIPKDHPLISALPPQGDA 107


>gi|325964023|ref|YP_004241929.1| ferredoxin [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470110|gb|ADX73795.1| ferredoxin [Arthrobacter phenanthrenivorans Sphe3]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T      + K N E+            S   AAK+ G   K     +  P
Sbjct: 61  TPEEWADYYKANVEFFDDL-------GSPGGAAKI-GNTGKDHPMIAALP 102


>gi|41408705|ref|NP_961541.1| FdxC_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118465894|ref|YP_880561.1| ferredoxin [Mycobacterium avium 104]
 gi|41397063|gb|AAS04924.1| FdxC_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167181|gb|ABK68078.1| ferredoxin [Mycobacterium avium 104]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   AAK+   +   +      P G+ 
Sbjct: 61  VPDQWSQYTQINADFFAEL-------GSPGGAAKVGLTENDPQVVKDLPPQGEG 107


>gi|134097606|ref|YP_001103267.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008475|ref|ZP_06566448.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|120023|sp|P24496|FER_SACER RecName: Full=Ferredoxin
 gi|1223836|gb|AAA92023.1| ferredoxin [Saccharopolyspora erythraea]
 gi|133910229|emb|CAM00342.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 106

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + K N ++  +         S   AAK+  V +  E   S  P G+
Sbjct: 61  VPDEWAAYTKANVDFFDEL-------GSPGGAAKVGKVDRDVEPVSSLPPQGE 106


>gi|297192269|ref|ZP_06909667.1| ferredoxin [Streptomyces pristinaespiralis ATCC 25486]
 gi|190333637|gb|ACE73826.1| putative ferredoxin [Streptomyces peucetius ATCC 27952]
 gi|297151282|gb|EFH31065.1| ferredoxin [Streptomyces pristinaespiralis ATCC 25486]
          Length = 106

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|295836680|ref|ZP_06823613.1| ferredoxin [Streptomyces sp. SPB74]
 gi|302521743|ref|ZP_07274085.1| ferredoxin [Streptomyces sp. SPB78]
 gi|295826155|gb|EDY46645.2| ferredoxin [Streptomyces sp. SPB74]
 gi|302430638|gb|EFL02454.1| ferredoxin [Streptomyces sp. SPB78]
          Length = 137

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 33  TYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 92

Query: 60  EPGLELWLKINSEYATQ 76
               + + K N E+  +
Sbjct: 93  PEEWKDYYKANVEFFDE 109


>gi|326772206|ref|ZP_08231491.1| ferredoxin [Actinomyces viscosus C505]
 gi|326638339|gb|EGE39240.1| ferredoxin [Actinomyces viscosus C505]
          Length = 116

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E + + N ++         K    P  A+  GV    +   +  P
Sbjct: 61  VPEEWEDYTRANIDFFEL------KGLGSPGGAQRTGVLDYDDPMIAALP 104


>gi|254818770|ref|ZP_05223771.1| ferredoxin [Mycobacterium intracellulare ATCC 13950]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   AAK+   +   +      P G+ 
Sbjct: 61  VPDQWSQYTQINADFFAEL-------GSPGGAAKVGMTENDPQVVKDLPPQGEG 107


>gi|317506366|ref|ZP_07964177.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255329|gb|EFV14588.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDKACIEECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                  ++  N+E+  +         S   AAK+       E
Sbjct: 61  VPDEWTPFVTANAEFFDEL-------GSPGGAAKVGKTPHDAE 96


>gi|260906738|ref|ZP_05915060.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 110

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + CI  K   CV+ CPVDC YEGE  L IHPDECIDCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCIDVKDKSCVDECPVDCIYEGERSLYIHPDECIDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N ++  +
Sbjct: 61 VPEEWADYYTYNVDFFDE 78


>gi|320008744|gb|ADW03594.1| putative ferredoxin [Streptomyces flavogriseus ATCC 33331]
          Length = 106

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
          T    + + K N E+  
Sbjct: 61 TPEEWKDYYKANVEFFD 77


>gi|284033401|ref|YP_003383332.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812694|gb|ADB34533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
           flavida DSM 17836]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDLKDLACVEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T    + +   N ++              P  A   G   K   + +  P
Sbjct: 61  TPEQWKDYYTANVDFFNDL--------GSPGGASKLGKIDKDHPFIAALP 102


>gi|220913278|ref|YP_002488587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860156|gb|ACL40498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T      + K N E+            S   AAK+ G   K     +  P
Sbjct: 61  TPDEWADYYKANVEFFDDL-------GSPGGAAKI-GNTGKDHPMIAALP 102


>gi|290957604|ref|YP_003488786.1| ferredoxin [Streptomyces scabiei 87.22]
 gi|260647130|emb|CBG70229.1| ferredoxin [Streptomyces scabiei 87.22]
          Length = 105

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|254818693|ref|ZP_05223694.1| FdxC_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 108

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + +
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIFYEDD 60

Query: 61 PGLEL--WLKINSEYATQ 76
             E   +L+IN+++  +
Sbjct: 61 LPDEHSGYLQINADFFAE 78


>gi|29829671|ref|NP_824305.1| ferredoxin [Streptomyces avermitilis MA-4680]
 gi|29606780|dbj|BAC70840.1| putative ferredoxin [Streptomyces avermitilis MA-4680]
          Length = 106

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|240171688|ref|ZP_04750347.1| ferredoxin FdxC [Mycobacterium kansasii ATCC 12478]
          Length = 108

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 VPDQWTQYTQINADFFDE 78


>gi|239929111|ref|ZP_04686064.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|291437447|ref|ZP_06576837.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|302558592|ref|ZP_07310934.1| ferredoxin [Streptomyces griseoflavus Tu4000]
 gi|291340342|gb|EFE67298.1| ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|302476210|gb|EFL39303.1| ferredoxin [Streptomyces griseoflavus Tu4000]
          Length = 105

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|189913023|ref|YP_001964912.1| Conserved ferredoxin oxidoreductase-like hypothetical protein
          [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|189913352|ref|YP_001964581.1| Ferredoxin [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Paris)']
 gi|167777699|gb|ABZ95999.1| Conserved ferredoxin oxidoreductase-like hypothetical protein
          [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Ames)']
 gi|167781420|gb|ABZ99717.1| Ferredoxin [Leptospira biflexa serovar Patoc strain 'Patoc 1
          (Paris)']
          Length = 99

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 2/99 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M YVVTE C+ CK+T C  VCPV+ F+E  + L I PD CIDC  C+ ECP+DAI P  D
Sbjct: 1  MAYVVTEICVDCKYTSCAAVCPVEAFHEAPDTLYIDPDTCIDCNACQYECPIDAIFPDYD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
               +  +++N++ A ++P I T K  L  A   D  K
Sbjct: 61 VPEKHKPSIEVNAKEANKFPVIVTTKPPLKGAKCSDPSK 99


>gi|328884828|emb|CCA58067.1| ferredoxin [Streptomyces venezuelae ATCC 10712]
          Length = 106

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           T    + + K N E+  +         S   A+K+  +++ +    +  P   
Sbjct: 61  TPEEWKDYYKANVEFFDEL-------GSPGGASKLGEIERDHPFIAALPPQNG 106


>gi|320450842|ref|YP_004202938.1| conserved domain-containing protein [Thermus scotoductus SA-01]
 gi|320151011|gb|ADW22389.1| conserved domain protein [Thermus scotoductus SA-01]
          Length = 93

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 5  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIYPEED 64

Query: 59 TEPGLELWLKINSEYATQWPNI 80
               +++++ N  +A   PN+
Sbjct: 65 VPEQWKVYIEKNRTWAQTLPNV 86


>gi|330813498|ref|YP_004357737.1| ferredoxin [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486593|gb|AEA80998.1| ferredoxin [Candidatus Pelagibacter sp. IMCC9063]
          Length = 83

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/81 (48%), Positives = 52/81 (64%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L I+PDECIDCGVCEPECP+ AI+PDT  G E  + +N + +  WP IT KK+ LP   
Sbjct: 1   MLVINPDECIDCGVCEPECPIGAIEPDTNDGAEKLVLLNKKLSETWPVITKKKDPLPDWE 60

Query: 92  KMDGVKQKYEKYFSPNPGGKN 112
           K   ++ K +KY+S   G  +
Sbjct: 61  KFKDMENKLDKYYSEKAGPGD 81


>gi|254388886|ref|ZP_05004117.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294814826|ref|ZP_06773469.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|326443204|ref|ZP_08217938.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|197702604|gb|EDY48416.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294327425|gb|EFG09068.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
          Length = 105

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGRRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|108800994|ref|YP_641191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119870135|ref|YP_940087.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|126436831|ref|YP_001072522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|108771413|gb|ABG10135.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119696224|gb|ABL93297.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
 gi|126236631|gb|ABO00032.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 107

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N+++  +         S   A+K+       +      P G++
Sbjct: 61  VPDQWSAYTQYNADFFAEL-------GSPGGASKVGQTDNDPQAVKDLPPQGED 107


>gi|302542741|ref|ZP_07295083.1| ferredoxin [Streptomyces hygroscopicus ATCC 53653]
 gi|302460359|gb|EFL23452.1| ferredoxin [Streptomyces himastatinicus ATCC 53653]
          Length = 136

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 30  TYVIAQPCVDLKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 89

Query: 60  EPGLELWLKINSEYATQ 76
               + + K N E+  +
Sbjct: 90  PEEWKDYYKANVEFFDE 106


>gi|291191900|gb|ADD83007.1| PtnO9 [Streptomyces platensis]
          Length = 111

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  KH  C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDLKHKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T    + + K N E+  +           P  A   G+  +     +  P
Sbjct: 61  TPEEWKDYYKANVEFFDEL--------GSPGGAARLGLIDRDHPVVAAQP 102


>gi|300741914|ref|ZP_07071935.1| ferredoxin [Rothia dentocariosa M567]
 gi|300381099|gb|EFJ77661.1| ferredoxin [Rothia dentocariosa M567]
          Length = 106

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACVEECPVDCIYEGDRTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  ++  N+E+            S   AAKM G   K   + +  P   
Sbjct: 61  VPEEWSEYITANAEFFDDL-------GSPGGAAKM-GPTGKDVPFIAALPPQG 105


>gi|296166244|ref|ZP_06848683.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898428|gb|EFG77995.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ E C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV++I  + +
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGERMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 61 PGLE--LWLKINSEYATQ 76
             E   + + N+++  +
Sbjct: 61 LPAEYSQYTQFNADFFAE 78


>gi|257067244|ref|YP_003153499.1| ferredoxin [Brachybacterium faecium DSM 4810]
 gi|256558062|gb|ACU83909.1| ferredoxin [Brachybacterium faecium DSM 4810]
          Length = 109

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/114 (41%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+   C+  K   CV+ CPVDC YEG   L I PDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIALPCVDVKDRACVDECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
           T      +   N E+            S   AAKM GV  K        P   N
Sbjct: 61  TPDQWAEYYNANVEFFDDL-------GSPGGAAKM-GVIDKDHPLVEALPPQPN 106


>gi|183984247|ref|YP_001852538.1| ferredoxin FdxC [Mycobacterium marinum M]
 gi|183177573|gb|ACC42683.1| ferredoxin FdxC [Mycobacterium marinum M]
          Length = 108

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  + +IN+++  +         S   AAK+   +   +      P G+
Sbjct: 61  VPEQWSQYTQINADFFAEL-------GSPGGAAKVGMTENDPQVVKDLPPQGE 106


>gi|296169415|ref|ZP_06851037.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895917|gb|EFG75610.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 108

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + +IN+++  +         S   AAK+   +   +      P G+ 
Sbjct: 61  VPEQWSQYTQINADFFVEL-------GSPGGAAKVGMTENDPQVVKDLPPQGEG 107


>gi|239738513|gb|ACS13712.1| PtmO9 [Streptomyces platensis]
          Length = 111

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1   MTYVIAQPCVDLKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T    + + K N E+  +           P  A   G+  +     +  P
Sbjct: 61  TPEEWKDYYKANVEFFDEL--------GSPGGAARLGMIDRDHPVVAAQP 102


>gi|269795884|ref|YP_003315339.1| ferredoxin [Sanguibacter keddieii DSM 10542]
 gi|269098069|gb|ACZ22505.1| ferredoxin [Sanguibacter keddieii DSM 10542]
          Length = 105

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N E+            S   AAKM G   K        P
Sbjct: 61  VPDEWSEYYKANVEFFDDL-------GSPGGAAKM-GEIDKDHAVILALP 102


>gi|3334183|sp|Q45560|FER_BACSC RecName: Full=Ferredoxin 7Fe; AltName: Full=Seven-iron ferredoxin
 gi|474962|dbj|BAA06187.1| ferredoxin [Bacillus schlegelii]
          Length = 78

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +  
Sbjct: 1  MAYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDF 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +++ N ++  +
Sbjct: 61 VPEEWKSYIQKNRDFFKK 78


>gi|331698393|ref|YP_004334632.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326953082|gb|AEA26779.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 114

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+   C+      CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGLPCVDVLDRACVDECPVDCIYEGERALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ-WPNITTKKESLPSAAK 92
              L+ +   N+ +  +  P       S   AAK
Sbjct: 61 LPESLQEYQADNARFFAEPLPGRDAPLGSPGGAAK 95


>gi|283780772|ref|YP_003371527.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pirellula staleyi DSM 6068]
 gi|283439225|gb|ADB17667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
          staleyi DSM 6068]
          Length = 90

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT+VV + C  CKHTDCV VCP DCF+EG+  L I PD CIDC  C  ECPV+AI  D  
Sbjct: 1  MTHVVCKACFGCKHTDCVVVCPCDCFHEGDQMLYIDPDACIDCCACSSECPVEAIFIDDA 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESL 87
                 ++++N+E  TQ P+IT KK+ L
Sbjct: 61 VPADQLAFIQLNAEMVTQTPSITQKKKPL 89


>gi|326778460|ref|ZP_08237725.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus
          XylebKG-1]
 gi|326658793|gb|EGE43639.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus
          XylebKG-1]
          Length = 554

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
          DAI P      G   +  IN+ Y  
Sbjct: 59 DAIFPVDALSAGQREYADINAAYYE 83


>gi|297153736|gb|ADI03448.1| ferredoxin [Streptomyces bingchenggensis BCW-1]
          Length = 127

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + CI  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  + +
Sbjct: 1  MTYVIAQPCIDIKDRACVIECPVDCIYEGNRTLYINPAECVDCHACEPVCPVEAIFYEDD 60

Query: 61 PGLE--LWLKINSEYAT 75
             +   +  IN+EY  
Sbjct: 61 LPQQWAQYKAINAEYFE 77


>gi|254449213|ref|ZP_05062662.1| ferredoxin, 4Fe-4S [gamma proteobacterium HTCC5015]
 gi|198261190|gb|EDY85486.1| ferredoxin, 4Fe-4S [gamma proteobacterium HTCC5015]
          Length = 85

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNI 80
           +DCF+EG NFL I PD CIDC +C P CP +AI PD E   G   +  +N+E +  WP +
Sbjct: 1   MDCFHEGPNFLVIDPDACIDCSLCVPACPAEAIYPDDELPEGQAHFTALNAELSKLWPVL 60

Query: 81  TTKKESLPSAAKMDGVKQKYEKY 103
              K  LP A   DG   K    
Sbjct: 61  DEPKAPLPDADDWDGEPDKLSHL 83


>gi|134100924|ref|YP_001106585.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL
          2338]
 gi|291003463|ref|ZP_06561436.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL
          2338]
 gi|133913547|emb|CAM03660.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL
          2338]
          Length = 508

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M Y +T+ C  C    CV+VCPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1  MAYAITQTC--CNDASCVKVCPVNCIHPTPDEPDFGTAEMLHIDPATCIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEYAT 75
          +AI P  +    L+ + ++N+ Y  
Sbjct: 59 EAIFPVEELTGPLKPYAEVNAAYYA 83


>gi|116671359|ref|YP_832292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrobacter sp. FB24]
 gi|116611468|gb|ABK04192.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Arthrobacter sp. FB24]
          Length = 108

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T      + K N E+  +
Sbjct: 61 TPDEWADYYKANVEFFDE 78


>gi|297202177|ref|ZP_06919574.1| ferredoxin [Streptomyces sviceus ATCC 29083]
 gi|197713616|gb|EDY57650.1| ferredoxin [Streptomyces sviceus ATCC 29083]
          Length = 105

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPDEWKDYYKANVEFFDE 78


>gi|116669636|ref|YP_830569.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrobacter sp. FB24]
 gi|116609745|gb|ABK02469.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Arthrobacter sp. FB24]
          Length = 106

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C++ CPVDC YEGE  L IHP EC+DCG C+P CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIDECPVDCIYEGERSLYIHPSECVDCGACDPVCPVEAIYYSDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 +++ N E+  +
Sbjct: 61 VPDEWADYIRANVEFFEE 78


>gi|239942291|ref|ZP_04694228.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL
          15998]
 gi|239988757|ref|ZP_04709421.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL
          11379]
 gi|291445751|ref|ZP_06585141.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
 gi|291348698|gb|EFE75602.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
          Length = 556

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 46/105 (43%), Gaps = 19/105 (18%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
          DAI P      G   +  IN+ Y          +E L    ++DG
Sbjct: 59 DAIFPVDSLSAGQREYADINAAYYEG-------EEPLSVGDEVDG 96


>gi|182437825|ref|YP_001825544.1| putative ferredoxin reductase [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178466341|dbj|BAG20861.1| putative ferredoxin reductase [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 554

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRACIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
          DAI P      G   +  IN+ Y  
Sbjct: 59 DAIFPVDALSAGQREYADINAAYYE 83


>gi|54023376|ref|YP_117618.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54014884|dbj|BAD56254.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 529

 Score =  107 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 15/100 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YVVT++C  C    CV  CPV+C +   +         L + P  C+DCG C   CPV
Sbjct: 1  MPYVVTQSC--CSDASCVYACPVNCIHPTPDEPDFLTAEMLYVDPQACVDCGACATACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQ---WPNITTKKESL 87
          DAI    +       +++IN+++  Q    P +     + 
Sbjct: 59 DAITSSKKLTAEQLPFIEINADFYRQERPRPLLARPVPAP 98


>gi|308177963|ref|YP_003917369.1| 4Fe-4S ferredoxin domain-containing protein [Arthrobacter
           arilaitensis Re117]
 gi|307745426|emb|CBT76398.1| 4Fe-4S ferredoxin domain-containing protein [Arthrobacter
           arilaitensis Re117]
          Length = 107

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ + C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAQPCVDVKDKACVEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N ++  +         S   AAK+ G         S  P
Sbjct: 61  VPDEWADYYKANVDFFDEL-------GSPGGAAKI-GNTGTDHPLISALP 102


>gi|323359534|ref|YP_004225930.1| ferredoxin [Microbacterium testaceum StLB037]
 gi|323275905|dbj|BAJ76050.1| ferredoxin [Microbacterium testaceum StLB037]
          Length = 106

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N E+            S   AAK+ GV  K     +  P
Sbjct: 61  LPEEWSDYYKANVEFFDD-------IGSPGGAAKV-GVIAKDHPVITALP 102


>gi|296393263|ref|YP_003658147.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Segniliparus rotundus DSM 44985]
 gi|296180410|gb|ADG97316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Segniliparus rotundus DSM 44985]
          Length = 108

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C+E CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVMDKACIEECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N+E+  +
Sbjct: 61 VPDEWASFTTANAEFFDE 78


>gi|320450822|ref|YP_004202918.1| ferredoxin-1 [Thermus scotoductus SA-01]
 gi|320150991|gb|ADW22369.1| ferredoxin-1 [Thermus scotoductus SA-01]
          Length = 90

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 5  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIFPEED 64

Query: 59 TEPGLELWLKINSEYATQWPNITT 82
                 +++ N ++A   PN+ T
Sbjct: 65 VPEPWREYIEKNRQWARTLPNVHT 88


>gi|302553940|ref|ZP_07306282.1| ferredoxin [Streptomyces viridochromogenes DSM 40736]
 gi|302471558|gb|EFL34651.1| ferredoxin [Streptomyces viridochromogenes DSM 40736]
          Length = 134

 Score =  107 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           TYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 31  TYVIAQPCVDVKDKACIEECPVDCIYEGSRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 90

Query: 60  EPGLELWLKINSEYATQ 76
               + + K N E+  +
Sbjct: 91  PEEWKDYYKANVEFFDE 107


>gi|254456143|ref|ZP_05069572.1| ferredoxin [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083145|gb|EDZ60571.1| ferredoxin [Candidatus Pelagibacter sp. HTCC7211]
          Length = 77

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 53/76 (69%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
            L I PDECIDCGVCEPECPVDAI  DTEPG E WL+IN++Y+  WPNI+ KK+      
Sbjct: 1   MLVIKPDECIDCGVCEPECPVDAITADTEPGSEKWLEINTKYSEIWPNISEKKDPPTDHE 60

Query: 92  KMDGVKQKYEKYFSPN 107
           K    + KYEKYF  N
Sbjct: 61  KFKDEQNKYEKYFKEN 76


>gi|256832039|ref|YP_003160766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Jonesia denitrificans DSM 20603]
 gi|256685570|gb|ACV08463.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Jonesia
           denitrificans DSM 20603]
          Length = 105

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAKPCVDVKDKACIEECPVDCIYEGNRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + + N E+            S   AAKM G   K        P
Sbjct: 61  VPEEWSEFYQANVEFFDDL-------GSPGGAAKM-GQIDKDHAIVEALP 102


>gi|227548437|ref|ZP_03978486.1| ferredoxin [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079481|gb|EEI17444.1| ferredoxin [Corynebacterium lipophiloflavum DSM 44291]
          Length = 110

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTY++ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 4  MTYIIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 63

Query: 59 TEPGLELWLKINSEYAT 75
          T      +  +N  +  
Sbjct: 64 TPEEWADYYDVNVAFFD 80


>gi|300785297|ref|YP_003765588.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
 gi|299794811|gb|ADJ45186.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
          Length = 489

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CTDATCVSVCPVNCIHPTPDEPDFGTTDLLYIDPVTCIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEYATQWPNITTKKESL 87
          DAI P  D    L  + +IN+EY      +     + 
Sbjct: 59 DAIFPAGDLTGPLRAYEQINAEYYAGRDVLAEVPVAP 95


>gi|307332364|ref|ZP_07611435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
 gi|297157503|gb|ADI07215.1| ferredoxin [Streptomyces bingchenggensis BCW-1]
 gi|306881977|gb|EFN13092.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
          Length = 108

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDLKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T    + + K N E+  +
Sbjct: 61 TPEEWKDYYKANVEFFDE 78


>gi|260904087|ref|ZP_05912409.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 107

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTY++ + C+  K   CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYIIAQPCVDLKDKACVDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T      + K N E+  +
Sbjct: 61 TPEEWSEYYKANVEFFDE 78


>gi|296140639|ref|YP_003647882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
 gi|296028773|gb|ADG79543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Tsukamurella paurometabola DSM 20162]
          Length = 510

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 12/100 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    C   CPV+C +   +         L + P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDAACTFACPVNCIHPTPDEPGFATAEMLYVDPTTCVDCGACVTACPV 58

Query: 53 DAIKPD--TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
          DAI P        +++++IN   A   P  ++     P A
Sbjct: 59 DAIGPAHRLPEEHKVYIEINRSLAAADPANSSLGGPNPQA 98


>gi|297195797|ref|ZP_06913195.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
          25486]
 gi|297152954|gb|EFH32068.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 452

 Score =  107 bits (268), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCVAVCPVNCIHPTPEERAFGSTEMLYIDPRSCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
          DAI P        + +  IN+ Y  
Sbjct: 59 DAIFPVDSLSGSQQEYAAINAAYFE 83


>gi|326330916|ref|ZP_08197216.1| ferredoxin [Nocardioidaceae bacterium Broad-1]
 gi|325951274|gb|EGD43314.1| ferredoxin [Nocardioidaceae bacterium Broad-1]
          Length = 107

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           MTYV+ + C+  K   CV+ CPVDC YEG+  L IHPDEC+DCG CEP CP +AI    D
Sbjct: 1   MTYVIAQPCVDVKDKACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPPEAIFYEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
           T    + +   N ++            S   AA+M G   K   + +  P
Sbjct: 61  TPEEWKEYYDANVKFFDDL-------GSPGGAARM-GEIDKDHPFVAALP 102


>gi|320531785|ref|ZP_08032710.1| putative ferredoxin [Actinomyces sp. oral taxon 171 str. F0337]
 gi|325067472|ref|ZP_08126145.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Actinomyces oris K20]
 gi|329944142|ref|ZP_08292401.1| ferredoxin [Actinomyces sp. oral taxon 170 str. F0386]
 gi|320135997|gb|EFW28020.1| putative ferredoxin [Actinomyces sp. oral taxon 171 str. F0337]
 gi|328530872|gb|EGF57728.1| ferredoxin [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 116

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E + + N ++         K    P  A+  G     +   +  P
Sbjct: 61  VPEEWEDYTRANIDFFEL------KGLGSPGGAQRTGALDYDDPMIAALP 104


>gi|158312725|ref|YP_001505233.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Frankia sp. EAN1pec]
 gi|158108130|gb|ABW10327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EAN1pec]
          Length = 107

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +   N+ +  +
Sbjct: 61 VPDQWKTFTDTNASFFEE 78


>gi|296395410|ref|YP_003660294.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM
          44985]
 gi|296182557|gb|ADG99463.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM
          44985]
          Length = 556

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 12/86 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CSDGSCVFACPVNCIHPTPDEPGFLTAETLHIDPAACVDCGACVHACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYATQ 76
          DAI PD++       +L+IN+ +  +
Sbjct: 59 DAIAPDSKLTAEQLPFLEINASFFPK 84


>gi|121610433|ref|YP_998240.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555073|gb|ABM59222.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Verminephrobacter eiseniae EF01-2]
          Length = 113

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          M YV+T  CI  K   CV+ CPVDC Y G   L IHPDECIDCGVCEP CP  AI  D  
Sbjct: 1  MAYVITTGCIDVKDGACVQCCPVDCIYTGGRTLYIHPDECIDCGVCEPACPTQAIYEDHR 60

Query: 59 TEPGLELWLKINSEYA 74
              L  +L IN E+ 
Sbjct: 61 LPAPLRPFLAINREFF 76


>gi|154507672|ref|ZP_02043314.1| hypothetical protein ACTODO_00153 [Actinomyces odontolyticus ATCC
           17982]
 gi|293189345|ref|ZP_06608068.1| ferredoxin [Actinomyces odontolyticus F0309]
 gi|153797306|gb|EDN79726.1| hypothetical protein ACTODO_00153 [Actinomyces odontolyticus ATCC
           17982]
 gi|292821808|gb|EFF80744.1| ferredoxin [Actinomyces odontolyticus F0309]
          Length = 113

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEG   L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGARSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  +L+ N ++              P  A+  GV+   +   +  P
Sbjct: 61  LPSEWSDYLRANVDFFNDL--------GSPGGAQKTGVQDFDDPMIAALP 102


>gi|317125728|ref|YP_004099840.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Intrasporangium calvum DSM 43043]
 gi|315589816|gb|ADU49113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Intrasporangium calvum DSM 43043]
          Length = 108

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGIRTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  +   N E+            S   AAKM  +++ +    +  P  
Sbjct: 61  VPEQWADYYNANVEFFDDL-------GSPGGAAKMGQIQKDHPLILALPPQA 105


>gi|255326955|ref|ZP_05368031.1| ferredoxin [Rothia mucilaginosa ATCC 25296]
 gi|283457664|ref|YP_003362249.1| ferredoxin [Rothia mucilaginosa DY-18]
 gi|255296172|gb|EET75513.1| ferredoxin [Rothia mucilaginosa ATCC 25296]
 gi|283133664|dbj|BAI64429.1| ferredoxin [Rothia mucilaginosa DY-18]
          Length = 106

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CVE CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACVEECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  ++  N+++            S   AAK+ G   K   + +  P
Sbjct: 61  VPEEWSEYVSANADFFDDL-------GSPGGAAKL-GPTGKDVPFIAALP 102


>gi|219848770|ref|YP_002463203.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus aggregans DSM 9485]
 gi|219543029|gb|ACL24767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus aggregans DSM 9485]
          Length = 78

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+TE CI  K   CV VCPVDC YEG++   I+PDECIDCG CEPECPV+AI  D  
Sbjct: 1  MPYVITEPCIGTKDASCVAVCPVDCIYEGDDQYYINPDECIDCGACEPECPVEAIFADDA 60

Query: 60 -EPGLELWLKINSEYA 74
               + +++ N ++ 
Sbjct: 61 VPEQWKSYIEKNRKFF 76


>gi|297571981|ref|YP_003697755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932328|gb|ADH93136.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 107

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   CV+ CPVDC YEGE  L IHPDEC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACVDECPVDCIYEGERTLYIHPDECVDCGACEPVCPTEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N E+            S   A K+  +  K     +  P G N
Sbjct: 61  LPEEWSEYHRANVEFFDDL-------GSPGGATKLGPIA-KDHPLIAELPQGIN 106


>gi|88855520|ref|ZP_01130184.1| ferredoxin [marine actinobacterium PHSC20C1]
 gi|88815427|gb|EAR25285.1| ferredoxin [marine actinobacterium PHSC20C1]
          Length = 110

 Score =  107 bits (267), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+ + C+  K   C++ CPVDC YEG   L IHPDEC+DCG C+P CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDKACIDACPVDCIYEGGRSLYIHPDECVDCGACDPVCPVEAIYYVDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 + + N ++ ++
Sbjct: 61 VPDKWGEYTQANVDFFSE 78


>gi|21225392|ref|NP_631171.1| ferredoxin [Streptomyces coelicolor A3(2)]
 gi|9885208|emb|CAC04216.1| ferredoxin [Streptomyces coelicolor A3(2)]
          Length = 129

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + C+  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  + +
Sbjct: 1  MTYVIAQPCVDIKDRACVTECPVDCIYEGARTLYINPAECVDCHACEPVCPVEAIFHEDD 60

Query: 61 PG--LELWLKINSEYATQ 76
                 +L +N+EY  +
Sbjct: 61 LPRHWAHYLAVNAEYFDE 78


>gi|269955770|ref|YP_003325559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269304451|gb|ACZ30001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 105

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACIEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                + +   N E+            S   AAK+ G+ +K        P
Sbjct: 61  VPDQWKDYYGANVEFFDDL-------GSPGGAAKL-GLIEKDHPLVEALP 102


>gi|256783588|ref|ZP_05522019.1| ferredoxin [Streptomyces lividans TK24]
 gi|289767469|ref|ZP_06526847.1| ferredoxin [Streptomyces lividans TK24]
 gi|289697668|gb|EFD65097.1| ferredoxin [Streptomyces lividans TK24]
          Length = 129

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + C+  K   CV  CPVDC YEG   L I+P EC+DC  CEP CPV+AI  + +
Sbjct: 1  MTYVIAQPCVDIKDRACVTECPVDCIYEGARTLYINPAECVDCHACEPVCPVEAIFHEDD 60

Query: 61 PG--LELWLKINSEYATQ 76
                 +L +N+EY  +
Sbjct: 61 LPRHWAHYLAVNAEYFDE 78


>gi|296170063|ref|ZP_06851666.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895273|gb|EFG74983.1| ferredoxin [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 113

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TY + E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 7   TYTIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 66

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                 + +IN+++ T+         S   AAK+   +   +      P G+ 
Sbjct: 67  PDQWSQYTQINADFFTEL-------GSPGGAAKVGLTENDPQVVKDLPPQGEG 112


>gi|331694874|ref|YP_004331113.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949563|gb|AEA23260.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 108

 Score =  106 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C+E CPVDC YEG   + IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDLLDKACIEECPVDCIYEGGRMMYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + K N+E+  +         S   A+K+  V +      +  P   +
Sbjct: 61  VPEQWGAYQKANAEFFDEL-------GSPGGASKVGKVAKDAGPALTLPPQSHD 107


>gi|297562832|ref|YP_003681806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847280|gb|ADH69300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 106

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+      C++ CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAQPCVDVLDKACIDECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N ++              P  A   G   +     +  P
Sbjct: 61  LPEQWSDFYKANVDFFDDL--------GSPGGASKVGKIDRDHPLVAKLP 102


>gi|159039669|ref|YP_001538922.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Salinispora arenicola CNS-205]
 gi|157918504|gb|ABV99931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Salinispora
           arenicola CNS-205]
          Length = 108

 Score =  106 bits (266), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                + +   N E+              P  A   G  +K   + +  P     
Sbjct: 61  VPEQWKDYTAANYEFFEDL--------GSPGGASKIGKVEKDATFVAAQPPRGEA 107


>gi|295396223|ref|ZP_06806404.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970930|gb|EFG46824.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 131

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TY++ + C+  K   CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 28  TYIIAQPCVDLKDKACVDECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIYYEDDV 87

Query: 60  EPGLELWLKINSEYATQ 76
                 + K N E+  +
Sbjct: 88  PEQWAEYYKANVEFFDE 104


>gi|302524318|ref|ZP_07276660.1| ferredoxin [Streptomyces sp. AA4]
 gi|302433213|gb|EFL05029.1| ferredoxin [Streptomyces sp. AA4]
          Length = 106

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVLDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 + K N ++  +
Sbjct: 61 VPDNWSDYTKANVDFFNE 78


>gi|240168739|ref|ZP_04747398.1| FdxC_1 [Mycobacterium kansasii ATCC 12478]
          Length = 108

 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  +  
Sbjct: 1  MAYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 + +IN+++  +
Sbjct: 61 LPGEWNEYQQINADFFAE 78


>gi|86742537|ref|YP_482937.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86569399|gb|ABD13208.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +   N+ +  +
Sbjct: 61 VPDQWKGYTDTNANFFEE 78


>gi|317506365|ref|ZP_07964176.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255328|gb|EFV14587.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 112

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VV E C+      C+E CPVDC Y G   + I+PD CIDCG CEP CPV+AI    D
Sbjct: 1   MAFVVAEPCVDVLDRSCLEECPVDCMYTGNRMVYINPDLCIDCGACEPVCPVEAIYFEDD 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
              G   + + N+E+    P +        +   + GV      Y +  P
Sbjct: 61  VPEGWSAFRQANAEFFKDIPGLPEPGSYSGNGTAL-GVIDHDAPYVAALP 109


>gi|41410450|emb|CAE51194.1| putative ferredoxin [Thermus thermophilus]
          Length = 87

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+    L IHPDECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDRSCQEVCPVECIYDAGEQLYIHPDECIDCGACVPACPVNAIYPEED 60

Query: 59 TEPGLELWLKINSEYATQWPNI 80
                ++++ N  +A   PN+
Sbjct: 61 VPEQWRIYIEKNRTWAQTLPNV 82


>gi|254774707|ref|ZP_05216223.1| ferredoxin FdxA_1 [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 117

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGKPCVDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAK 92
              L+ +   N+  ++           S   AAK
Sbjct: 61 LPEELQPYQADNAAFFSETLQGRDEPLGSPGGAAK 95


>gi|227494787|ref|ZP_03925103.1| possible ferredoxin [Actinomyces coleocanis DSM 15436]
 gi|226831239|gb|EEH63622.1| possible ferredoxin [Actinomyces coleocanis DSM 15436]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEG+  L IHP+EC+DCG CEP CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGQRSLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + + N ++         K+   P  A+  GV +  ++  +  P
Sbjct: 61  LPEEWSDYYRANVDFF--------KEIGSPGGAQRTGVLEHDDEMIAALP 102


>gi|120012|sp|P00215|FER_MYCSM RecName: Full=Ferredoxin
          Length = 106

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +   
Sbjct: 1   TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVEAIYYEDDV 60

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                 + + N+++  +         S   A+K+       +      P G++
Sbjct: 61  PDQWSSYAQANADFFAEL-------GSPGGASKVGQTDNDPQAIKDLPPQGED 106


>gi|148273357|ref|YP_001222918.1| hypothetical protein CMM_2173 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147831287|emb|CAN02243.1| fdxB [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 106

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N E+  +
Sbjct: 61 LPEKWSDYYTANVEFFAE 78


>gi|238563896|ref|ZP_04610789.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
 gi|238519725|gb|EEP83193.1| ferredoxin-1 [Burkholderia mallei GB8 horse 4]
          Length = 76

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1  MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +  +N+E A
Sbjct: 61 VPGDQQHFTALNAELA 76


>gi|111225470|ref|YP_716264.1| ferredoxin [Frankia alni ACN14a]
 gi|111153002|emb|CAJ64749.1| Ferredoxin [Frankia alni ACN14a]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +   N+ +  +
Sbjct: 61 VPDQWKGYTDTNANFFEE 78


>gi|19554145|ref|NP_602147.1| ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|62391799|ref|YP_227201.1| ferredoxin [Corynebacterium glutamicum ATCC 13032]
 gi|21325732|dbj|BAC00353.1| Ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|41327141|emb|CAF20985.1| FERREDOXIN [Corynebacterium glutamicum ATCC 13032]
          Length = 107

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELW--LKINSEYAT 75
             E W     N+ +  
Sbjct: 61 VPHEWWDYTGANAAFFD 77


>gi|170782550|ref|YP_001710883.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157119|emb|CAQ02298.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
          Length = 106

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N E+  +
Sbjct: 61 LPEKWSDYYTANVEFFAE 78


>gi|50955230|ref|YP_062518.1| ferredoxin [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951712|gb|AAT89413.1| ferredoxin [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 106

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 56/110 (50%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  + K N E+            S   AAK+ GV  K     +  P
Sbjct: 61  LPEEWADYYKANVEFFDD-------IGSPGGAAKV-GVIAKDHPIIAALP 102


>gi|254822186|ref|ZP_05227187.1| ferredoxin FdxA_1 [Mycobacterium intracellulare ATCC 13950]
          Length = 117

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ + C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MAYVIGKPCVDVMDRACVEECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSE-YATQWPNITTKKESLPSAAK 92
              L+ +   N+  ++           S   AAK
Sbjct: 61 LPEELQPYQADNAAFFSETLEGRDGPLGSPGGAAK 95


>gi|229819624|ref|YP_002881150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Beutenbergia cavernae DSM 12333]
 gi|229565537|gb|ACQ79388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Beutenbergia cavernae DSM 12333]
          Length = 105

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCVDIKDKACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
                 + K N E+  +         S   AAKM  + 
Sbjct: 61 VPEQWAEYYKANVEFFDEL-------GSPGGAAKMGMIP 92


>gi|15807321|ref|NP_296051.1| ferredoxin [Deinococcus radiodurans R1]
 gi|6460141|gb|AAF11876.1|AE002064_7 ferredoxin [Deinococcus radiodurans R1]
          Length = 123

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           M +V+T  CI  K   C EVCPV+C YEG     IHPDECIDCG C P CPV AI P  D
Sbjct: 46  MPHVITSPCIGVKDQACTEVCPVECIYEGGEQFFIHPDECIDCGACVPACPVSAIFPEED 105

Query: 59  TEPGLELWLKINSEYA 74
              G + ++  NS + 
Sbjct: 106 VPDGEQDFIVKNSAHF 121


>gi|225022906|ref|ZP_03712098.1| hypothetical protein CORMATOL_02952 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305682158|ref|ZP_07404962.1| ferredoxin [Corynebacterium matruchotii ATCC 14266]
 gi|224944129|gb|EEG25338.1| hypothetical protein CORMATOL_02952 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305658631|gb|EFM48134.1| ferredoxin [Corynebacterium matruchotii ATCC 14266]
          Length = 105

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCVDVMDRACVEECPVDCIYEGQRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 ++  N+ +  
Sbjct: 61 VPDEWIDYIDANAAFFD 77


>gi|148271844|ref|YP_001221405.1| hypothetical protein CMM_0665 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147829774|emb|CAN00693.1| fdxA [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 108

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N E+  +
Sbjct: 61 LPEKWSDYYTANVEFFAE 78


>gi|297626788|ref|YP_003688551.1| Ferredoxin [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
 gi|296922553|emb|CBL57126.1| Ferredoxin [Propionibacterium freudenreichii subsp. shermanii
          CIRM-BIA1]
          Length = 106

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+   C+  K   CVE CPVDC YEGE  L IHP+EC+DCG CEP CP +AI  + +
Sbjct: 1  MTYVIALPCVDVKDKACVEECPVDCIYEGERTLYIHPEECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLE--LWLKINSEYATQ 76
             E   W  +N+ + ++
Sbjct: 61 LPDEYKEWYDVNANFFSE 78


>gi|312194598|ref|YP_004014659.1| ferredoxin [Frankia sp. EuI1c]
 gi|311225934|gb|ADP78789.1| ferredoxin [Frankia sp. EuI1c]
          Length = 107

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +   N+ +  +
Sbjct: 61 VPEQWKPYTDTNASFFEE 78


>gi|256374918|ref|YP_003098578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Actinosynnema mirum DSM 43827]
 gi|255919221|gb|ACU34732.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Actinosynnema mirum DSM 43827]
          Length = 108

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAQPCVDVLDKACIEECPVDCIYEGDRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + K N ++  
Sbjct: 61 VPDEWSAYTKANVDFFD 77


>gi|269219106|ref|ZP_06162960.1| ferredoxin [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211253|gb|EEZ77593.1| ferredoxin [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 106

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++   C+      CV+ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIALPCVDVMDRACVDECPVDCIYEGERTLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 ++  +N+E+              P  A+  G       Y +  P   
Sbjct: 61  LPEEWSVFESVNAEFFD--------DIGSPGGAQRLGPTGSDHPYVAGLPPQG 105


>gi|319950850|ref|ZP_08024734.1| 7Fe ferredoxin [Dietzia cinnamea P4]
 gi|319435505|gb|EFV90741.1| 7Fe ferredoxin [Dietzia cinnamea P4]
          Length = 107

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + E C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAEPCVDVMDKSCVEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
             E W + N+  A  +  +     S   AAK+  V
Sbjct: 61 VPDE-WTEYNAANADFFVEL----GSPGGAAKVGKV 91


>gi|118618156|ref|YP_906488.1| ferredoxin FdxC_1 [Mycobacterium ulcerans Agy99]
 gi|183983410|ref|YP_001851701.1| ferredoxin FdxC_1 [Mycobacterium marinum M]
 gi|118570266|gb|ABL05017.1| ferredoxin FdxC_1 [Mycobacterium ulcerans Agy99]
 gi|183176736|gb|ACC41846.1| ferredoxin FdxC_1 [Mycobacterium marinum M]
          Length = 108

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV++I  + +
Sbjct: 1  MTYVIAEPCVDIKDKACIEECPVDCIYEGARMLYIHPDECVDCGACEPVCPVESIYYEDD 60

Query: 61 PGLEL--WLKINSEYATQ 76
             E   + +IN ++ ++
Sbjct: 61 LPAEYSGYTQINVDFFSE 78


>gi|300782955|ref|YP_003763246.1| ferredoxin [Amycolatopsis mediterranei U32]
 gi|269784343|emb|CBH51373.1| ferredoxin [Amycolatopsis balhimycina]
 gi|299792469|gb|ADJ42844.1| ferredoxin [Amycolatopsis mediterranei U32]
          Length = 106

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+      C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVLDKACIDECPVDCIYEGERMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 + K N ++  +
Sbjct: 61 VPDNWSDYTKANVDFFDE 78


>gi|258654428|ref|YP_003203584.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258557653|gb|ACV80595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 108

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDVLDRACVEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + + N ++            S   A+K   V +      +  P G++
Sbjct: 61  VPAEWADYTRANVDFFDDL-------GSPGGASKTGKVAKDDPMVAALPPMGED 107


>gi|296119440|ref|ZP_06837998.1| ferredoxin [Corynebacterium ammoniagenes DSM 20306]
 gi|295967323|gb|EFG80590.1| ferredoxin [Corynebacterium ammoniagenes DSM 20306]
          Length = 107

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E WL+ N   A  + ++ +   +
Sbjct: 61 VPDE-WLEYNDANAAFFDDLGSPGGA 85


>gi|226228428|ref|YP_002762534.1| ferredoxin [Gemmatimonas aurantiaca T-27]
 gi|226091619|dbj|BAH40064.1| ferredoxin [Gemmatimonas aurantiaca T-27]
          Length = 87

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M YV+TE CI  K   CV+VCPVDC YEGE+ L I+PDECIDCG CEPECPV AI P  D
Sbjct: 1  MPYVITEACISVKDRSCVDVCPVDCIYEGEDQLYINPDECIDCGACEPECPVTAIFPEED 60

Query: 59 TEPGLELWLKINSEYAT 75
              L  ++  N +   
Sbjct: 61 VPTQLRSFIAKNKDVFE 77


>gi|320012396|gb|ADW07246.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
          [Streptomyces flavogriseus ATCC 33331]
          Length = 556

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCVSVCPVNCIHPTPEEPDFGRTEMLYIDPRSCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
          +A+ P          +  IN+EY  
Sbjct: 59 EAVFPVDSLPAAQAEYGPINAEYFA 83


>gi|302869764|ref|YP_003838401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315503754|ref|YP_004082641.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora sp. L5]
 gi|330469998|ref|YP_004407741.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|302572623|gb|ADL48825.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410373|gb|ADU08490.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora sp. L5]
 gi|328812969|gb|AEB47141.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 108

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                + +   N E+              P  A   G  +K   + +  P
Sbjct: 61  VPEQWKDYTGANYEFFEDL--------GSPGGASKIGKVEKDATFVAAQP 102


>gi|120029|sp|P13279|FER_STRGR RecName: Full=Ferredoxin
          Length = 105

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
          TYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI    DT
Sbjct: 1  TYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFYEDDT 60

Query: 60 EPGLELWLKINSEYAT 75
              + + K N E+  
Sbjct: 61 PEEWKDYYKANVEFFD 76


>gi|297564678|ref|YP_003683650.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849127|gb|ADH62142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 79

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+TE CI  K   CVEVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + ++  N + +
Sbjct: 61 VPAEFQSYIAKNRKLS 76


>gi|145220987|ref|YP_001131665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145213473|gb|ABP42877.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 142

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 26  MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 85

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNPGG 110
              E   +L  N+ + T    ++ + E L  P  A   G         +  P  
Sbjct: 86  LPDEELAFLDDNAAFFTT--TLSGRDEPLGDPGGAAKLGRVGADTPLVAALPAS 137


>gi|169628420|ref|YP_001702069.1| ferredoxin FdxC [Mycobacterium abscessus ATCC 19977]
 gi|169240387|emb|CAM61415.1| Probable ferredoxin FdxC [Mycobacterium abscessus]
          Length = 123

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          TY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + + 
Sbjct: 17 TYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDDV 76

Query: 62 GLEL--WLKINSEYA 74
            +   +++ N+++ 
Sbjct: 77 PDQWTGYIQSNADFF 91


>gi|238060947|ref|ZP_04605656.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
 gi|237882758|gb|EEP71586.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
          Length = 108

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                + +   N E+              P  A   G  +K   + +  P
Sbjct: 61  VPEQWKDYTGANYEFFEDL--------GSPGGASKIGKVEKDATFVAGQP 102


>gi|302527244|ref|ZP_07279586.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
 gi|302436139|gb|EFL07955.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
          Length = 500

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 12/96 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C +   +         L + P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CNDATCVSVCPVNCIHPTPDEPDFGTTEMLYVDPASCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKINSEYATQWPNITTKKES 86
          DAI P       ++++  IN+++    P +      
Sbjct: 59 DAIFPVDLLTDSMKVYAGINADFFADRPAVAANPAP 94


>gi|145596271|ref|YP_001160568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora tropica CNB-440]
 gi|145305608|gb|ABP56190.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Salinispora tropica CNB-440]
          Length = 108

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDVLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +   N E+  
Sbjct: 61 VPEQWKDYTAANYEFFE 77


>gi|308234735|ref|ZP_07665472.1| putative ferredoxin 1 [Gardnerella vaginalis ATCC 14018]
 gi|311115179|ref|YP_003986400.1| ferredoxin [Gardnerella vaginalis ATCC 14019]
 gi|310946673|gb|ADP39377.1| ferredoxin [Gardnerella vaginalis ATCC 14019]
          Length = 106

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
               E +     EY  +  ++   +E+ PS    D V
Sbjct: 61 VPEEWEWYKDAAIEYFNKLGDLGGAQEAGPSGWDEDRV 98


>gi|226366514|ref|YP_002784297.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226245004|dbj|BAH55352.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 107

 Score =  105 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+      C+E CPVDC YEG   + IHPDEC+DCG CEP CPV+AI  D +
Sbjct: 1  MPYVIAEPCVDVLDKACIEECPVDCIYEGGRMMYIHPDECVDCGACEPVCPVEAIFFDDD 60

Query: 61 PGLEL--WLKINSEYATQ 76
             +   ++  N+E+  +
Sbjct: 61 LPDQWSGYVSSNAEFFDE 78


>gi|291302949|ref|YP_003514227.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572169|gb|ADD45134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 106

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY++ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYIIAEPCVDLLDKACIEECPVDCIYEGNRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                  +   N E+  +           P  A   G  +K   + +  P  
Sbjct: 61  VPEEWSDYTGANYEFFEEL--------GSPGGASKVGKIEKDATFVASRPAK 104


>gi|148654468|ref|YP_001274673.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Roseiflexus sp. RS-1]
 gi|156740275|ref|YP_001430404.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Roseiflexus castenholzii DSM 13941]
 gi|148566578|gb|ABQ88723.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Roseiflexus sp. RS-1]
 gi|156231603|gb|ABU56386.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Roseiflexus
          castenholzii DSM 13941]
          Length = 78

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M Y++ E CI  K   CV VCPVDC YEGE+   I+P+ECIDCG CEPECPV+AI  D  
Sbjct: 1  MAYIIAEPCIGVKDASCVAVCPVDCIYEGEDQYYINPEECIDCGACEPECPVEAIFADDS 60

Query: 60 -EPGLELWLKINSEYA 74
                 +++ N  + 
Sbjct: 61 VPEQWHSYIEKNRAFF 76


>gi|157830220|pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
          Structures
          Length = 77

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +   
Sbjct: 1  AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFV 60

Query: 60 EPGLELWLKINSEYATQ 76
              + +++ N ++  +
Sbjct: 61 PEEWKSYIQKNRDFFKK 77


>gi|163847117|ref|YP_001635161.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus aurantiacus J-10-fl]
 gi|222524953|ref|YP_002569424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroflexus sp. Y-400-fl]
 gi|163668406|gb|ABY34772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus aurantiacus J-10-fl]
 gi|222448832|gb|ACM53098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroflexus sp. Y-400-fl]
          Length = 78

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M Y++ E CI  K   CV VCPVDC YEG++   I+PDECIDCG CEPECPV+AI  D  
Sbjct: 1  MPYIIAEPCIGTKDASCVAVCPVDCIYEGDDQYYINPDECIDCGACEPECPVEAIFADDS 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +++ N ++  
Sbjct: 61 VPEQWKSYIEKNRKFFE 77


>gi|289640678|ref|ZP_06472850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia
          symbiont of Datisca glomerata]
 gi|289509567|gb|EFD30494.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia
          symbiont of Datisca glomerata]
          Length = 107

 Score =  104 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDKACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +   N+ +  +
Sbjct: 61 VPDQWKGFADSNALFFEE 78


>gi|319441049|ref|ZP_07990205.1| hypothetical protein CvarD4_04702 [Corynebacterium variabile DSM
          44702]
          Length = 107

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E ++  N+ +  
Sbjct: 61 LPDEWEDYIDFNTAFFD 77


>gi|297564743|ref|YP_003683715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849192|gb|ADH62207.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 86

 Score =  104 bits (261), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   C EVCPV+C Y+G + L IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIAEPCIGVKDRSCQEVCPVECIYDGGDQLYIHPDECIDCGACVPACPVSAIYPQED 60

Query: 59 TEPGLELWLKINSEYAT 75
                 +++ N   + 
Sbjct: 61 LPAEWYSYIEKNRRLSA 77


>gi|282862944|ref|ZP_06272004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
 gi|282561926|gb|EFB67468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces sp. ACTE]
          Length = 548

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    C+ VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CSDATCIAVCPVNCIHPTPEERDFGSTEMLHIDPKSCIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKINSEYAT 75
          DAI P       L  + +IN+ Y  
Sbjct: 59 DAIFPVESLTGALREYEQINAAYYE 83


>gi|258593114|emb|CBE69425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein (modular
          protein) [NC10 bacterium 'Dutch sediment']
          Length = 113

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M YVV + CI  K   CV+VCPV+CFYEGE  L IHP+ECIDC  CEPECPV AI     
Sbjct: 1  MAYVVADPCIGTKDHACVDVCPVECFYEGEELLFIHPEECIDCAACEPECPVAAIFEASQ 60

Query: 59 TEPGLELWLKINSE 72
               + ++++N++
Sbjct: 61 VPEQWQHFIQMNAD 74


>gi|288920898|ref|ZP_06415194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
 gi|288347730|gb|EFC82011.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
          EUN1f]
          Length = 107

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ E C+  K   C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYVIAEPCVDVKDRACIEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               +++   N+ +  +
Sbjct: 61 VPEQWKVYADNNATFFEE 78


>gi|269925717|ref|YP_003322340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
 gi|269789377|gb|ACZ41518.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
          Length = 81

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+TE CI  K   CVEVCPVDC Y  +      IHPDECIDCG CEPECPV AI P+
Sbjct: 1  MPYVITEPCIGVKDASCVEVCPVDCIYTDDEAPMYYIHPDECIDCGACEPECPVSAIYPE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                 + +++IN++Y  
Sbjct: 61 DSVPEQWQHYIQINADYFK 79


>gi|260577611|ref|ZP_05845549.1| ferredoxin [Corynebacterium jeikeium ATCC 43734]
 gi|258604264|gb|EEW17503.1| ferredoxin [Corynebacterium jeikeium ATCC 43734]
          Length = 105

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E +   N+ +  
Sbjct: 61 VPDEWEEYNDANAAFFD 77


>gi|328949904|ref|YP_004367239.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinithermus hydrothermalis DSM 14884]
 gi|328450228|gb|AEB11129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinithermus hydrothermalis DSM 14884]
          Length = 79

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+TE CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITEPCIGVKDQSCTEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 +++ N + A
Sbjct: 61 VPEQWVSFIEKNRKLA 76


>gi|226304299|ref|YP_002764257.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183414|dbj|BAH31518.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
          PR4]
          Length = 574

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +V+T++C  C    CV VCP +C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVITQSC--CNDAACVVVCPANCIHPTPDEPDYARTEILYIDPRSCVDCGACIQACPV 58

Query: 53 DAIKPDTE--PGLELWLKINSEYAT 75
          DAI P  E  P    + ++N+ Y  
Sbjct: 59 DAIVPHDELTPQTIRYAELNALYFA 83


>gi|25027716|ref|NP_737770.1| putative ferredoxin [Corynebacterium efficiens YS-314]
 gi|259506882|ref|ZP_05749782.1| ferredoxin [Corynebacterium efficiens YS-314]
 gi|23492998|dbj|BAC17970.1| putative ferredoxin [Corynebacterium efficiens YS-314]
 gi|259165514|gb|EEW50068.1| ferredoxin [Corynebacterium efficiens YS-314]
          Length = 105

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E W+  N   A  + ++ +   +
Sbjct: 61 VPDE-WIDYNEANAAFFDDLGSPGGA 85


>gi|297242981|ref|ZP_06926919.1| ferredoxin [Gardnerella vaginalis AMD]
 gi|296889192|gb|EFH27926.1| ferredoxin [Gardnerella vaginalis AMD]
          Length = 110

 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 4/96 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
             G E +     +Y  +  ++    ++   A+  D
Sbjct: 61 LPEGWEWYRDAAVDYFDKLGDLGGATDA--GASGWD 94


>gi|121599359|ref|YP_993807.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|226197927|ref|ZP_03793501.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
 gi|121228169|gb|ABM50687.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|225930115|gb|EEH26128.1| putative ferredoxin [Burkholderia pseudomallei Pakistan 9]
          Length = 85

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYATQWPNI 80
           +DCF EG NFLAI PDECIDC VC  ECP +AI    D     + +  +N+E A  WP+I
Sbjct: 1   MDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEEDVPGDQQHFTALNAELAKDWPSI 60

Query: 81  TTKKESLPSAAKMDGVKQKYEKY 103
           T  K +   A +   V++K    
Sbjct: 61  TKTKPAPADADEWKDVQEKLHLL 83


>gi|283782746|ref|YP_003373500.1| putative ferredoxin 1 [Gardnerella vaginalis 409-05]
 gi|283442204|gb|ADB14670.1| putative ferredoxin 1 [Gardnerella vaginalis 409-05]
          Length = 110

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 4/96 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
             G E +     +Y  +  ++    ++   A+  D
Sbjct: 61 LPDGWEWYRDAAVDYFDKLGDLGGATDA--GASGWD 94


>gi|325002600|ref|ZP_08123712.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Pseudonocardia sp.
           P1]
          Length = 108

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAEPCVDLLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKN 112
                  + K N ++  +         S   A+K+  V    E   S  P   +
Sbjct: 61  VPDQWAAYTKANVDFFDEL-------GSPGGASKVGKVDMDVEPAKSLPPQEHD 107


>gi|28493542|ref|NP_787703.1| ferredoxin [Tropheryma whipplei str. Twist]
 gi|28572347|ref|NP_789127.1| ferredoxin [Tropheryma whipplei TW08/27]
 gi|28410478|emb|CAD66864.1| ferredoxin [Tropheryma whipplei TW08/27]
 gi|28476584|gb|AAO44672.1| ferredoxin [Tropheryma whipplei str. Twist]
          Length = 108

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 10/115 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+   C+  K   C++ CPVDC YEG   L I+PDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYVIAFPCVDLKDRACIDECPVDCIYEGGRSLYINPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + + N E+  +         S   AAK+  V        +  P   ++
Sbjct: 61  LPEEWGEYYRANVEFFDE-------IGSPGGAAKLGPV-DFDHPIIAQLPKSSDS 107


>gi|298346081|ref|YP_003718768.1| putative ferredoxin [Mobiluncus curtisii ATCC 43063]
 gi|304390160|ref|ZP_07372114.1| ferredoxin [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654663|ref|ZP_07907569.1| ferredoxin [Mobiluncus curtisii ATCC 51333]
 gi|315657420|ref|ZP_07910302.1| ferredoxin [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236142|gb|ADI67274.1| possible ferredoxin [Mobiluncus curtisii ATCC 43063]
 gi|304326642|gb|EFL93886.1| ferredoxin [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491127|gb|EFU80746.1| ferredoxin [Mobiluncus curtisii ATCC 51333]
 gi|315491892|gb|EFU81501.1| ferredoxin [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 107

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEGE  L I+P EC+DCG CEP CP  AI  +  
Sbjct: 1   MTYVIAQPCVDVKDKACVDECPVDCIYEGERTLYINPLECVDCGACEPVCPPQAIYYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                  +L+   ++   + N        P  A + G   K +   +  P   
Sbjct: 61  LPEPWTDFLRAGRDFFADFDN------PTPGGASVVGKVDKDDPMIAALPPQG 107


>gi|227497862|ref|ZP_03928046.1| possible ferredoxin [Actinomyces urogenitalis DSM 15434]
 gi|226832711|gb|EEH65094.1| possible ferredoxin [Actinomyces urogenitalis DSM 15434]
          Length = 117

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+ + C+  K   CV+ CPVDC YEGE  L I+ DEC+DCG CEP CP +AI  +  
Sbjct: 1  MTYVIAQPCVDVKDRACVDECPVDCIYEGERSLYINADECVDCGACEPVCPTEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQW----PNITTKKESLP 88
                 + + N ++ +      P    K  +LP
Sbjct: 61 VPEEWSDYTRANIDFFSLKDLGSPGGAQKTGALP 94


>gi|68536481|ref|YP_251186.1| hypothetical protein jk1395 [Corynebacterium jeikeium K411]
 gi|68264080|emb|CAI37568.1| fdxA [Corynebacterium jeikeium K411]
          Length = 105

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E +   N+ +  
Sbjct: 61 VPDEWEEYNDANAAFFD 77


>gi|111021988|ref|YP_704960.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226364495|ref|YP_002782277.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|110821518|gb|ABG96802.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226242984|dbj|BAH53332.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 108

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLE--LWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
             +   + K N+++            S   AAK+  V
Sbjct: 61 VPDQWVEYTKANADFFDDL-------GSPGGAAKLGKV 91


>gi|38233568|ref|NP_939335.1| ferredoxin [Corynebacterium diphtheriae NCTC 13129]
 gi|38199828|emb|CAE49491.1| ferredoxin [Corynebacterium diphtheriae]
          Length = 105

 Score =  104 bits (259), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E W+  N   A  + ++ +   +
Sbjct: 61 VPDE-WIDYNDANAAFFDSLGSPGGA 85


>gi|226307668|ref|YP_002767628.1| 7Fe ferredoxin [Rhodococcus erythropolis PR4]
 gi|229493921|ref|ZP_04387693.1| ferredoxin [Rhodococcus erythropolis SK121]
 gi|226186785|dbj|BAH34889.1| 7Fe ferredoxin [Rhodococcus erythropolis PR4]
 gi|229319198|gb|EEN85047.1| ferredoxin [Rhodococcus erythropolis SK121]
          Length = 107

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
                 ++  N ++            S   AAK+  V
Sbjct: 61 VPDQWNAYISTNVDFFDDL-------GSPGGAAKLGKV 91


>gi|326381449|ref|ZP_08203143.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326199696|gb|EGD56876.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 108

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      CVE CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDVLDRACVEECPVDCIYEGGRMLYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               E ++  N ++  +
Sbjct: 61 VPDEWEPYVSANVDFFEE 78


>gi|298253085|ref|ZP_06976877.1| ferredoxin [Gardnerella vaginalis 5-1]
 gi|297532480|gb|EFH71366.1| ferredoxin [Gardnerella vaginalis 5-1]
          Length = 110

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MPYVIAEPCVDVKDKACVDECPVDCIYEGDRTLYINPNECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
               E +     +Y  +  ++    ++   A+  D
Sbjct: 61 LPEDWEWYRDAAVDYFDKLGDLGGATDA--GASGWD 94


>gi|157830233|pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
          Average Structure
          Length = 77

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--E 60
          YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +    
Sbjct: 2  YVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVP 61

Query: 61 PGLELWLKINSEYATQ 76
             + +++ N ++  +
Sbjct: 62 EEWKSYIQKNRDFFKK 77


>gi|328887041|emb|CCA60280.1| Ferredoxin or Ferredoxin--NADP(+) reductase,actinobacterial
          (eukaryote) type [Streptomyces venezuelae ATCC 10712]
          Length = 552

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEEPDFGTTEMLYIDPKSCIDCGACADACPV 58

Query: 53 DAIKPDTEPG--LELWLKINSEYAT 75
          DAI P       L  +  IN+ +  
Sbjct: 59 DAIFPADRLTGRLREYEAINAAHYA 83


>gi|298248993|ref|ZP_06972797.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|298250987|ref|ZP_06974791.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297546997|gb|EFH80864.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297548991|gb|EFH82858.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 86

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 10/85 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          MTYV+T+ C+  K   CV+VCPVDC +        E    L I+PDECIDCG CEP CPV
Sbjct: 1  MTYVITQPCVGVKDASCVDVCPVDCIHPTQSEAGFESSEQLYINPDECIDCGACEPVCPV 60

Query: 53 DAIKPD--TEPGLELWLKINSEYAT 75
           AI  +         ++KIN+++  
Sbjct: 61 TAIFEESAVPEEWNQYIKINADFFK 85


>gi|312138850|ref|YP_004006186.1| ferredoxin [Rhodococcus equi 103S]
 gi|325676447|ref|ZP_08156125.1| ferredoxin [Rhodococcus equi ATCC 33707]
 gi|311888189|emb|CBH47501.1| putative ferredoxin [Rhodococcus equi 103S]
 gi|325552625|gb|EGD22309.1| ferredoxin [Rhodococcus equi ATCC 33707]
          Length = 107

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAEPCVDVMDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGV 96
             +   ++  N ++            S   AAK+  V
Sbjct: 61 VPDQWNGYVAANVDFFDDL-------GSPGGAAKLGKV 91


>gi|24217168|ref|NP_714651.1| ferredoxin [Leptospira interrogans serovar Lai str. 56601]
 gi|45655667|ref|YP_003476.1| ferredoxin [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
 gi|24202210|gb|AAN51666.1| hypothetical protein LB_107 [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45602638|gb|AAS72113.1| ferredoxin [Leptospira interrogans serovar Copenhageni str.
          Fiocruz L1-130]
          Length = 99

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C  CK+T C  VCPV+ F EG + L I P  CIDC  C PECPV+AI PD E
Sbjct: 1  MAYVVTEPCRNCKYTYCAAVCPVEAFREGTDCLYIEPSVCIDCNKCRPECPVEAIYPDYE 60

Query: 61 PG--LELWLKINSEYATQWPNITTKKESL 87
                 W+++N++ A  +P I   K  L
Sbjct: 61 VPFVWRDWIEVNAQKAKCYPTILDVKIPL 89


>gi|183601928|ref|ZP_02963297.1| ferredoxin [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682842|ref|YP_002469225.1| ferredoxin [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190418|ref|YP_002967812.1| ferredoxin [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195824|ref|YP_002969379.1| ferredoxin [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218813|gb|EDT89455.1| ferredoxin [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620492|gb|ACL28649.1| ferredoxin [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248810|gb|ACS45750.1| ferredoxin [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250378|gb|ACS47317.1| ferredoxin [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178141|gb|ADC85387.1| Ferredoxin [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793405|gb|ADG32940.1| ferredoxin [Bifidobacterium animalis subsp. lactis V9]
          Length = 107

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YV+ + C+  K   CV+ CPVDC YEG+  L I+P+EC+DCG CEP CP +AI  +  
Sbjct: 1   MAYVIAQPCVDVKDKACVDECPVDCIYEGKRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
             P  E +     E+  +  ++   + + P       V  
Sbjct: 61  LPPEWEWYKDAAVEFFAEVGDLGGAQAAGPIGKDPQRVAD 100


>gi|46205236|ref|ZP_00209759.1| COG1146: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 92

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/64 (81%), Positives = 56/64 (87%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          +NCI CK+ DCVEVCPVDCFYEGEN L IHPDECIDCGVCEPECP +AIKPDTE  LE W
Sbjct: 1  DNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTEGNLESW 60

Query: 67 LKIN 70
          LK+N
Sbjct: 61 LKLN 64


>gi|311740712|ref|ZP_07714539.1| ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304232|gb|EFQ80308.1| ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 107

 Score =  103 bits (258), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDIMDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E WL  N   A  + ++ +   +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGSPGGA 85


>gi|19552328|ref|NP_600330.1| ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|62389992|ref|YP_225394.1| ferredoxin [Corynebacterium glutamicum ATCC 13032]
 gi|145295244|ref|YP_001138065.1| hypothetical protein cgR_1185 [Corynebacterium glutamicum R]
 gi|21323869|dbj|BAB98495.1| Ferredoxin 3 [Corynebacterium glutamicum ATCC 13032]
 gi|41325328|emb|CAF19808.1| FERREDOXIN [Corynebacterium glutamicum ATCC 13032]
 gi|140845164|dbj|BAF54163.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 105

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E WL  N   A  + ++ +   +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGSPGGA 85


>gi|320449419|ref|YP_004201515.1| ferredoxin-1 [Thermus scotoductus SA-01]
 gi|320149588|gb|ADW20966.1| ferredoxin-1 [Thermus scotoductus SA-01]
          Length = 79

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +++ N + A
Sbjct: 61 VPEQWKSYIEKNRKLA 76


>gi|54026725|ref|YP_120967.1| putative ferredoxin [Nocardia farcinica IFM 10152]
 gi|54018233|dbj|BAD59603.1| putative ferredoxin [Nocardia farcinica IFM 10152]
          Length = 106

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M Y++ E C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI    D
Sbjct: 1  MPYIIAEPCVDVKDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 59 TEPGLELWLKINSEYATQ 76
          T      ++  N ++  +
Sbjct: 61 TPDQWSGYVNANVDFFDE 78


>gi|227832808|ref|YP_002834515.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|255324435|ref|ZP_05365552.1| ferredoxin [Corynebacterium tuberculostearicum SK141]
 gi|262182703|ref|ZP_06042124.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|227453824|gb|ACP32577.1| Ferredoxin [Corynebacterium aurimucosum ATCC 700975]
 gi|255298341|gb|EET77641.1| ferredoxin [Corynebacterium tuberculostearicum SK141]
          Length = 107

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRGCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E WL  N   A  + ++ +   +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGSPGGA 85


>gi|291294431|ref|YP_003505829.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus ruber DSM 1279]
 gi|290469390|gb|ADD26809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          ruber DSM 1279]
          Length = 79

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIVEPCIGTKDKSCVEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + ++  N + A
Sbjct: 61 VPEQWQDYIAKNRKLA 76


>gi|269839181|ref|YP_003323873.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
 gi|269790911|gb|ACZ43051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermobaculum terrenum ATCC BAA-798]
          Length = 83

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T  CI  K   CVEVCPVDC Y  ++     I+PDECIDCG CEPECPV AI P+
Sbjct: 1  MPYVITAPCIGVKDASCVEVCPVDCIYTDDDAPQYYINPDECIDCGACEPECPVSAIYPE 60

Query: 59 T--EPGLELWLKINSEYAT 75
                 + +++IN+EY  
Sbjct: 61 DSVPEQWQDFIRINAEYFQ 79


>gi|227487879|ref|ZP_03918195.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542520|ref|ZP_03972569.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092206|gb|EEI27518.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181718|gb|EEI62690.1| possible ferredoxin [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 107

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + E C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYTIAEPCVDVKDKACVEECPVDCIYEGARSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
                 + + N+ +  
Sbjct: 61 VPDEWIDYNEANAAFFE 77


>gi|300933568|ref|ZP_07148824.1| Ferredoxin [Corynebacterium resistens DSM 45100]
          Length = 107

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 5/93 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
             E W + N+  A  + ++     S   AAKM
Sbjct: 61 IPDE-WEEYNAANAAFFDDL----GSPGGAAKM 88


>gi|295696289|ref|YP_003589527.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          tusciae DSM 2912]
 gi|295411891|gb|ADG06383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          tusciae DSM 2912]
          Length = 78

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +V+T  CI  K  +CVEVCPVD  +EGE+   I PD CIDCG CEP CPV AI  +  
Sbjct: 1  MAFVITSPCIDEKAAECVEVCPVDAIHEGEDQYYIDPDTCIDCGACEPVCPVSAIYQEDF 60

Query: 60 -EPGLELWLKINSEYATQ 76
               + +++ N ++  +
Sbjct: 61 VPDDQKEFIQKNRDFFKK 78


>gi|218288758|ref|ZP_03493021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|218241116|gb|EED08292.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
          Length = 80

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MTYV+T  CI  K  DCVEVCPVD  ++G     I P+ CIDCG CEP CPV AI  +  
Sbjct: 2  MTYVITSPCIGEKAADCVEVCPVDAIHDGGATYLIDPERCIDCGACEPVCPVSAIFHEAS 61

Query: 59 TEPGLELWLKINSEYAT 75
                 W++IN  +  
Sbjct: 62 VPDDERHWIEINRAFFQ 78


>gi|213964508|ref|ZP_03392708.1| ferredoxin [Corynebacterium amycolatum SK46]
 gi|213952701|gb|EEB64083.1| ferredoxin [Corynebacterium amycolatum SK46]
          Length = 107

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAQPCVDVLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 ++  N ++  +
Sbjct: 61 VPDEWVEFIDANVDWFDE 78


>gi|218294618|ref|ZP_03495472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
          aquaticus Y51MC23]
 gi|218244526|gb|EED11050.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
          aquaticus Y51MC23]
          Length = 79

 Score =  102 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +++ N + A
Sbjct: 61 VPEQWKSYIEKNRKLA 76


>gi|111022909|ref|YP_705881.1| ferredoxin [Rhodococcus jostii RHA1]
 gi|226365417|ref|YP_002783200.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|110822439|gb|ABG97723.1| possible ferredoxin [Rhodococcus jostii RHA1]
 gi|226243907|dbj|BAH54255.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 107

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y + E C+      C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MPYTIAEPCVDVLDKACIEECPVDCIYEGGRMLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGV 96
             +   ++  N ++            S   AAK+  V
Sbjct: 61 VPDQWNGYIAANVDFFDDL-------GSPGGAAKLGKV 91


>gi|300858189|ref|YP_003783172.1| ferredoxin [Corynebacterium pseudotuberculosis FRC41]
 gi|300685643|gb|ADK28565.1| Ferredoxin [Corynebacterium pseudotuberculosis FRC41]
 gi|302205911|gb|ADL10253.1| ferredoxin [Corynebacterium pseudotuberculosis C231]
 gi|302330467|gb|ADL20661.1| ferredoxin [Corynebacterium pseudotuberculosis 1002]
 gi|308276146|gb|ADO26045.1| ferredoxin [Corynebacterium pseudotuberculosis I19]
          Length = 105

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E WL  N   A  + ++ +   +
Sbjct: 61 VPDE-WLDYNDANAAFFDDLGSPGGA 85


>gi|46200111|ref|YP_005778.1| ferredoxin [Thermus thermophilus HB27]
 gi|55980146|ref|YP_143443.1| ferredoxin [Thermus thermophilus HB8]
 gi|62288089|sp|P03942|FER_THET8 RecName: Full=Ferredoxin
 gi|46197739|gb|AAS82151.1| ferredoxin [Thermus thermophilus HB27]
 gi|55771559|dbj|BAD70000.1| ferredoxin [Thermus thermophilus HB8]
          Length = 79

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
               + +++ N + A
Sbjct: 61 VPEQWKSYIEKNRKLA 76


>gi|15609144|ref|NP_216523.1| ferredoxin FDXA [Mycobacterium tuberculosis H37Rv]
 gi|15841489|ref|NP_336526.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31793187|ref|NP_855680.1| ferredoxin FDXA [Mycobacterium bovis AF2122/97]
 gi|121637891|ref|YP_978114.1| putative ferredoxin fdxA [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|148661821|ref|YP_001283344.1| ferredoxin FdxA [Mycobacterium tuberculosis H37Ra]
 gi|148823222|ref|YP_001287976.1| ferredoxin fdxA [Mycobacterium tuberculosis F11]
 gi|167970464|ref|ZP_02552741.1| ferredoxin fdxA [Mycobacterium tuberculosis H37Ra]
 gi|215404186|ref|ZP_03416367.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|215411702|ref|ZP_03420498.1| ferredoxin fdxA [Mycobacterium tuberculosis 94_M4241A]
 gi|215427368|ref|ZP_03425287.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|215430929|ref|ZP_03428848.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|215446220|ref|ZP_03432972.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|218753724|ref|ZP_03532520.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|219557969|ref|ZP_03537045.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|224990385|ref|YP_002645072.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798941|ref|YP_003031942.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 1435]
 gi|254232177|ref|ZP_04925504.1| ferredoxin fdxA [Mycobacterium tuberculosis C]
 gi|254364826|ref|ZP_04980872.1| ferredoxin fdxA [Mycobacterium tuberculosis str. Haarlem]
 gi|254551030|ref|ZP_05141477.1| ferredoxin fdxA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260186982|ref|ZP_05764456.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|260201110|ref|ZP_05768601.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|260205290|ref|ZP_05772781.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289443498|ref|ZP_06433242.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|289447624|ref|ZP_06437368.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|289554213|ref|ZP_06443423.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 605]
 gi|289570107|ref|ZP_06450334.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|289574683|ref|ZP_06454910.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289746045|ref|ZP_06505423.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|289750589|ref|ZP_06509967.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|289754113|ref|ZP_06513491.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|289758123|ref|ZP_06517501.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|289762161|ref|ZP_06521539.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|294996943|ref|ZP_06802634.1| ferredoxin fdxA [Mycobacterium tuberculosis 210]
 gi|297634582|ref|ZP_06952362.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 4207]
 gi|297731570|ref|ZP_06960688.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN R506]
 gi|298525509|ref|ZP_07012918.1| ferredoxin [Mycobacterium tuberculosis 94_M4241A]
 gi|306776244|ref|ZP_07414581.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu001]
 gi|306780027|ref|ZP_07418364.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu002]
 gi|306784775|ref|ZP_07423097.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu003]
 gi|306789133|ref|ZP_07427455.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu004]
 gi|306793467|ref|ZP_07431769.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu005]
 gi|306797851|ref|ZP_07436153.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu006]
 gi|306803731|ref|ZP_07440399.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu008]
 gi|306808305|ref|ZP_07444973.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu007]
 gi|306968129|ref|ZP_07480790.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu009]
 gi|306972354|ref|ZP_07485015.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu010]
 gi|307080063|ref|ZP_07489233.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu011]
 gi|307084638|ref|ZP_07493751.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu012]
 gi|313658903|ref|ZP_07815783.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN V2475]
 gi|54037088|sp|P64123|FER_MYCBO RecName: Full=Ferredoxin
 gi|54040765|sp|P64122|FER_MYCTU RecName: Full=Ferredoxin
 gi|1403446|emb|CAA98408.1| PROBABLE FERREDOXIN FDXA [Mycobacterium tuberculosis H37Rv]
 gi|13881731|gb|AAK46340.1| ferredoxin [Mycobacterium tuberculosis CDC1551]
 gi|31618779|emb|CAD96883.1| PROBABLE FERREDOXIN FDXA [Mycobacterium bovis AF2122/97]
 gi|121493538|emb|CAL72012.1| Probable ferredoxin fdxA [Mycobacterium bovis BCG str. Pasteur
          1173P2]
 gi|124601236|gb|EAY60246.1| ferredoxin fdxA [Mycobacterium tuberculosis C]
 gi|134150340|gb|EBA42385.1| ferredoxin fdxA [Mycobacterium tuberculosis str. Haarlem]
 gi|148505973|gb|ABQ73782.1| ferredoxin FdxA [Mycobacterium tuberculosis H37Ra]
 gi|148721749|gb|ABR06374.1| ferredoxin fdxA [Mycobacterium tuberculosis F11]
 gi|224773498|dbj|BAH26304.1| putative ferredoxin [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320444|gb|ACT25047.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 1435]
 gi|289416417|gb|EFD13657.1| ferredoxin fdxA [Mycobacterium tuberculosis T46]
 gi|289420582|gb|EFD17783.1| ferredoxin fdxA [Mycobacterium tuberculosis CPHL_A]
 gi|289438845|gb|EFD21338.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 605]
 gi|289539114|gb|EFD43692.1| ferredoxin fdxA [Mycobacterium tuberculosis K85]
 gi|289543861|gb|EFD47509.1| ferredoxin fdxA [Mycobacterium tuberculosis T17]
 gi|289686573|gb|EFD54061.1| ferredoxin fdxA [Mycobacterium tuberculosis 02_1987]
 gi|289691176|gb|EFD58605.1| ferredoxin fdxA [Mycobacterium tuberculosis T92]
 gi|289694700|gb|EFD62129.1| ferredoxin fdxA [Mycobacterium tuberculosis EAS054]
 gi|289709667|gb|EFD73683.1| ferredoxin fdxA [Mycobacterium tuberculosis GM 1503]
 gi|289713687|gb|EFD77699.1| ferredoxin fdxA [Mycobacterium tuberculosis T85]
 gi|298495303|gb|EFI30597.1| ferredoxin [Mycobacterium tuberculosis 94_M4241A]
 gi|308215355|gb|EFO74754.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu001]
 gi|308327065|gb|EFP15916.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu002]
 gi|308330506|gb|EFP19357.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu003]
 gi|308334341|gb|EFP23192.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu004]
 gi|308338142|gb|EFP26993.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu005]
 gi|308341834|gb|EFP30685.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu006]
 gi|308345322|gb|EFP34173.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu007]
 gi|308349624|gb|EFP38475.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu008]
 gi|308354253|gb|EFP43104.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu009]
 gi|308358230|gb|EFP47081.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu010]
 gi|308362161|gb|EFP51012.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu011]
 gi|308365815|gb|EFP54666.1| ferredoxin fdxA [Mycobacterium tuberculosis SUMu012]
 gi|323719499|gb|EGB28626.1| ferredoxin fdxA [Mycobacterium tuberculosis CDC1551A]
 gi|326903619|gb|EGE50552.1| ferredoxin fdxA [Mycobacterium tuberculosis W-148]
 gi|328458696|gb|AEB04119.1| ferredoxin fdxA [Mycobacterium tuberculosis KZN 4207]
          Length = 114

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MTYV+   C+      CV+ CPVDC YEG   L I+PDEC+DCG C+P C V+AI    D
Sbjct: 1  MTYVIGSECVDVMDKSCVQECPVDCIYEGARMLYINPDECVDCGACKPACRVEAIYWEGD 60

Query: 59 TEPGLELWLKINSEYA-TQWPNITTKKESLPSAA 91
                  L  N+ +     P       S   AA
Sbjct: 61 LPDDQHQHLGDNAAFFHQVLPGRVAPLGSPGGAA 94


>gi|312141637|ref|YP_004008973.1| ferredoxin [Rhodococcus equi 103S]
 gi|325673105|ref|ZP_08152799.1| ferredoxin [Rhodococcus equi ATCC 33707]
 gi|311890976|emb|CBH50295.1| ferredoxin [Rhodococcus equi 103S]
 gi|325556358|gb|EGD26026.1| ferredoxin [Rhodococcus equi ATCC 33707]
          Length = 106

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 49/94 (52%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ E CI      C+E CPVDC YEGE  L I+P+ECIDCG CE  CPV+AI  D +
Sbjct: 1  MAFVIGEACIDYMDRSCMEECPVDCIYEGERKLYINPNECIDCGACELACPVEAITVDRK 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
             E        +    P       +   AAK+D
Sbjct: 61 ADPEFKEDAKRFFLEILPTRAEPVGNPGGAAKID 94


>gi|239981284|ref|ZP_04703808.1| putative ferredoxin reductase [Streptomyces albus J1074]
 gi|291453142|ref|ZP_06592532.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
 gi|291356091|gb|EFE82993.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
          Length = 535

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTY +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CPV
Sbjct: 1  MTYAITQTC--CNDATCVAVCPVNCIHPTPEERAFGSTEMLHIDPRSCIDCGACADACPV 58

Query: 53 DAIKPDT--EPGLELWLKIN 70
          DAI P    +P    +  +N
Sbjct: 59 DAIFPVDRLKPAHREYAALN 78


>gi|227503767|ref|ZP_03933816.1| ferredoxin [Corynebacterium striatum ATCC 6940]
 gi|227199591|gb|EEI79639.1| ferredoxin [Corynebacterium striatum ATCC 6940]
          Length = 107

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MTYTIAQPCVDVMDRACVEECPVDCIYEGKRSLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E W+  N   A  + ++ +   +
Sbjct: 61 VPDE-WIDYNDANAAFFDDLGSPGGA 85


>gi|116329640|ref|YP_799359.1| hypothetical protein LBL_4106 [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116332526|ref|YP_802243.1| hypothetical protein LBJ_4090 [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116122533|gb|ABJ80426.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116127393|gb|ABJ77485.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 99

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVVTE C  CK+T C  VCPV+ F EG + L I P  CIDC  C PECPV+AI PD E
Sbjct: 1  MAYVVTEPCRNCKYTYCAAVCPVEAFREGADCLYIEPTVCIDCNKCRPECPVEAIYPDYE 60

Query: 61 PG--LELWLKINSEYATQWPNITTKKESL 87
                 W+  N   A  +P I   K  L
Sbjct: 61 VPSIWRDWVAENVHKAKHFPVIIDVKVPL 89


>gi|227874543|ref|ZP_03992706.1| possible ferredoxin [Mobiluncus mulieris ATCC 35243]
 gi|269977657|ref|ZP_06184624.1| ferredoxin [Mobiluncus mulieris 28-1]
 gi|306817830|ref|ZP_07451569.1| ferredoxin [Mobiluncus mulieris ATCC 35239]
 gi|307701395|ref|ZP_07638415.1| ferredoxin [Mobiluncus mulieris FB024-16]
 gi|227844752|gb|EEJ54898.1| possible ferredoxin [Mobiluncus mulieris ATCC 35243]
 gi|269934260|gb|EEZ90827.1| ferredoxin [Mobiluncus mulieris 28-1]
 gi|304649309|gb|EFM46595.1| ferredoxin [Mobiluncus mulieris ATCC 35239]
 gi|307613410|gb|EFN92659.1| ferredoxin [Mobiluncus mulieris FB024-16]
          Length = 106

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTYV+ + C+  K   CV+ CPVDC YEG   L I+P EC+DCG CE  CP +AI  +  
Sbjct: 1   MTYVIAQPCVDVKDRACVDECPVDCIYEGARTLYINPLECVDCGACEAVCPTEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                E +L+ N ++            +   A+    V  K +   +  P
Sbjct: 61  LPAEWEDYLRANRDFFDD-------IGTPGGASSYGPV-DKDDPMIAALP 102


>gi|296393262|ref|YP_003658146.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Segniliparus rotundus DSM 44985]
 gi|296180409|gb|ADG97315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Segniliparus
           rotundus DSM 44985]
          Length = 112

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           M +VV E C+      CVE CPVDC Y G+  + I+PD CIDCG CE  CPV+AI    D
Sbjct: 1   MAFVVAEPCVDVIDRSCVEECPVDCMYLGKRMVYINPDLCIDCGACESVCPVEAIYNEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
                  + + N+++      +      + +A+++ G   +   Y +  P 
Sbjct: 61  LPDEWSAFKEANAQFFEGVEGLPEPGSCVGNASEL-GELGRDAPYVAALPA 110


>gi|300781508|ref|ZP_07091362.1| ferredoxin [Corynebacterium genitalium ATCC 33030]
 gi|300533215|gb|EFK54276.1| ferredoxin [Corynebacterium genitalium ATCC 33030]
          Length = 107

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDLLDRACVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N  +  +
Sbjct: 61 LPEEWNDYYDANVAFFDE 78


>gi|207724517|ref|YP_002254914.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum MolK2]
 gi|207739155|ref|YP_002257548.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum IPO1609]
 gi|206589739|emb|CAQ36700.1| ferredoxin protein 3fe-4s [Ralstonia solanacearum MolK2]
 gi|206592528|emb|CAQ59434.1| probable ferredoxin protein 3fe-4s [Ralstonia solanacearum IPO1609]
          Length = 96

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLELWLKINSEYATQ--WP 78
           +DCF+ G NFL I PD CIDC +C PECPV AI    D       ++ +N++ + +  WP
Sbjct: 1   MDCFHAGPNFLVIDPDACIDCSICAPECPVGAIYAEADVPADQREFIALNAQLSRRPDWP 60

Query: 79  NITTKKESLPSAAKMDGVKQKY-EKYFSPNPGGKN 112
            +T  +  L   A+   VK K      +P PG + 
Sbjct: 61  RLTQVQPPLADHARWAQVKDKRSTLLIAPEPGTQT 95


>gi|108805583|ref|YP_645520.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108766826|gb|ABG05708.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 79

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+TE CI  K   CVEVCPVDC Y+G     I+P+ECIDCG CEPECPV+AI P+ E
Sbjct: 1  MTYVITEPCIGTKDQSCVEVCPVDCIYDGGEHFMINPEECIDCGACEPECPVEAIYPEDE 60

Query: 61 --PGLELWLKINSEYA 74
              ++ ++    E+ 
Sbjct: 61 VPEDMQQYITKAQEFF 76


>gi|294811298|ref|ZP_06769941.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|326439851|ref|ZP_08214585.1| ferredoxin [Streptomyces clavuligerus ATCC 27064]
 gi|294323897|gb|EFG05540.1| Ferredoxin [Streptomyces clavuligerus ATCC 27064]
          Length = 108

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 43/65 (66%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + E
Sbjct: 1  MAYVIAQPCVDVKDRACIEECPVDCIYEGPRKLYIHPDECVDCGACEPVCPVEAIFYEDE 60

Query: 61 PGLEL 65
            +E 
Sbjct: 61 VPVEW 65


>gi|311900686|dbj|BAJ33094.1| putative 7Fe ferredoxin [Kitasatospora setae KM-6054]
          Length = 104

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/78 (47%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYVV   C+  K   C E CPVD  YEG   L IHPDECIDCG CE  CPV+AI  +  
Sbjct: 1  MTYVVALPCVDVKDRACTEECPVDGIYEGPRMLYIHPDECIDCGACEVVCPVEAIHYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
              L  +   N+E+  +
Sbjct: 61 LPAELRPFAAANAEFCAE 78


>gi|262203210|ref|YP_003274418.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia bronchialis DSM 43247]
 gi|262086557|gb|ACY22525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
          bronchialis DSM 43247]
          Length = 108

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ E C+      CVE CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAEPCVDVMDKACVEECPVDCIYEGGRALYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               E ++  N+++  +
Sbjct: 61 VPDEWEPYVSANADFFDE 78


>gi|297623880|ref|YP_003705314.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Truepera radiovictrix DSM 17093]
 gi|297165060|gb|ADI14771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera
          radiovictrix DSM 17093]
          Length = 78

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +++TE CI  K   CV+VCPV+C YE E+ L IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHIITEPCIGVKDKSCVDVCPVECIYEAEDQLYIHPDECIDCGACVPACPVSAIYPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 +++ N + A
Sbjct: 61 VPSEWASYIQKNYDLA 76


>gi|311742320|ref|ZP_07716129.1| ferredoxin--NADP(+) reductase C-terminal domain protein
          [Aeromicrobium marinum DSM 15272]
 gi|311313948|gb|EFQ83856.1| ferredoxin--NADP(+) reductase C-terminal domain protein
          [Aeromicrobium marinum DSM 15272]
          Length = 559

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M +VVT +C  C    C   CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1  MPHVVTRSC--CADASCTFACPVNCIHPTPDEPDFGTAEMLYIDPVSCVDCGACVRACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEY 73
           AI P T+ G     +L+IN+ +
Sbjct: 59 GAIVPHTKLGEHELPFLEINAAF 81


>gi|172040342|ref|YP_001800056.1| hypothetical protein cur_0662 [Corynebacterium urealyticum DSM
          7109]
 gi|171851646|emb|CAQ04622.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 105

 Score =  101 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY + + C+      CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+A+  +  
Sbjct: 1  MTYTIAQPCVDVLDRSCVEECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAVFYEDD 60

Query: 60 -EPGLELWLKINSEYAT 75
               E +   N+ +  
Sbjct: 61 IPEEWEEYNDANAAFFD 77


>gi|86743147|ref|YP_483547.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86570009|gb|ABD13818.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 111

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          MT+VV   CI  K T CVE CPVDC YEG   L I+PDECIDCG C   CPVDAIK    
Sbjct: 1  MTFVVLSPCIDVKDTACVEECPVDCIYEGSRKLYINPDECIDCGACASVCPVDAIKSTRI 60

Query: 59 TEPGLELWLKINSEYAT-QWPNITTKKESLPSAAK 92
                 ++   + + T   P       +   A K
Sbjct: 61 VPASEAEFIADEARFFTDILPGRDAPIGNPGGAGK 95


>gi|94984884|ref|YP_604248.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
          DSM 11300]
 gi|94555165|gb|ABF45079.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
          geothermalis DSM 11300]
          Length = 78

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFVIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
             G E ++  N  + 
Sbjct: 61 VPAGEEEFIFKNRAFF 76


>gi|151568126|pdb|2V2K|A Chain A, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
           Mycobacterium Smegmatis
 gi|151568127|pdb|2V2K|B Chain B, The Crystal Structure Of Fdxa, A 7fe Ferredoxin From
           Mycobacterium Smegmatis
          Length = 105

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           TYV+ E C+  K   C+E CPVDC YEG   L IHPDEC+D G CEP CPV+AI  +   
Sbjct: 1   TYVIAEPCVDVKDKACIEECPVDCIYEGARMLYIHPDECVDXGACEPVCPVEAIYYEDDV 60

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
                 + + N+++  +         S   A+K+       +      P G+
Sbjct: 61  PDQWSSYAQANADFFAEL-------GSPGGASKVGQTDNDPQAIKDLPPQGE 105


>gi|116255229|ref|YP_771062.1| putative ferredoxin [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259877|emb|CAK02971.1| putative ferredoxin [Rhizobium leguminosarum bv. viciae 3841]
          Length = 108

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T+ CI  K  DC   CPVDC YEG     IHP ECI+CG+C   CPVDAI  D E
Sbjct: 1  MAYVITDPCIDVKDGDCTVACPVDCIYEGGRMFYIHPGECINCGLCLSVCPVDAISWDEE 60

Query: 61 PGLE--LWLKINSEYA 74
                 +  +N ++ 
Sbjct: 61 IPQSRVQFKAVNQDFF 76


>gi|331697480|ref|YP_004333719.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326952169|gb|AEA25866.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 114

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPD 58
          MTY++ E C+      CV+VCPVDC Y+G   L I+P ECI+CG CEPECPVDAI  + +
Sbjct: 1  MTYIIAEPCVDLMDRSCVDVCPVDCIYQGGRKLYINPGECIECGACEPECPVDAIVLEQE 60

Query: 59 TEPGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
                  L  N+ +     P           A     V
Sbjct: 61 LTDEERPHLADNAAFFYETLPGRDAPLGEPGGAGAFGPV 99


>gi|237785229|ref|YP_002905934.1| Ferredoxin [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758141|gb|ACR17391.1| Ferredoxin [Corynebacterium kroppenstedtii DSM 44385]
          Length = 105

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y + E C+  K   CVE CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  + +
Sbjct: 1  MAYTIAEPCVDVKDKACVEECPVDCIYEGVRSLYIHPDECVDCGACEPVCPVEAIFYEDD 60

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
             E W+  N   A  + ++ +   +
Sbjct: 61 VPDE-WIDYNDANAAFFDDLGSPGGA 85


>gi|6729719|pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
          Bacillus Schlegelii Fe7s8 Ferredoxin
 gi|6729750|pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of
          Bacillus Schlegelii Fe7s8 Ferredoxin
          Length = 77

 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-- 59
           YV+TE CI  K   CVEVCPVDC +EGE+   I PD CIDCG CE  CPV AI  +   
Sbjct: 1  AYVITEPCIGTKCASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFV 60

Query: 60 EPGLELWLKINSEYATQ 76
              + +++ N ++  +
Sbjct: 61 PEEWKSYIQKNRDFFKK 77


>gi|260905761|ref|ZP_05914083.1| N-succinyldiaminopimelate aminotransferase [Brevibacterium linens
          BL2]
          Length = 108

 Score =  100 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTY++ + C+  K   C++ CPVDC YEG   L IHP+EC+DCG CEP CPV+AI  +  
Sbjct: 1  MTYIIAQPCVDLKDRACIDECPVDCIYEGSRSLYIHPEECVDCGACEPVCPVEAIFYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
               E +   N ++   
Sbjct: 61 VPDEWEAYYSANVDFFDT 78


>gi|159896706|ref|YP_001542953.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889745|gb|ABX02825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Herpetosiphon aurantiacus ATCC 23779]
          Length = 77

 Score =  100 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+ E C+  K + CV+VCPVDC YEGE+   I+PDECIDCG CEPECPV AI     
Sbjct: 1  MAYVIAEPCVGTKDSACVKVCPVDCIYEGEDQYYINPDECIDCGACEPECPVSAIFSSDS 60

Query: 60 -EPGLELWLKINSEYA 74
                 + + N ++ 
Sbjct: 61 VPEQWASYTQKNVDFF 76


>gi|290960677|ref|YP_003491859.1| ferredoxin [Streptomyces scabiei 87.22]
 gi|260650203|emb|CBG73319.1| ferredoxin [Streptomyces scabiei 87.22]
          Length = 103

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MTYV+ + C+  K   C++ CPVDC YEG   L I PDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIAQPCVDVKDRACIDECPVDCIYEGPRKLYIQPDECVDCGACEPVCPVEAIFFEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
                 +   ++E      +      + P A  
Sbjct: 61 VPAEWSGYRSADAEVFAGLGSPGGASAAGPLAED 94


>gi|317122344|ref|YP_004102347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter marianensis DSM 12885]
 gi|315592324|gb|ADU51620.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter marianensis DSM 12885]
          Length = 78

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   C EVCPVDC YEGE+ L I+PDECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGVKDKSCQEVCPVDCIYEGEDQLYINPDECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYATQ 76
               + +++ N ++  Q
Sbjct: 61 VPEQWKHYIEKNRKFFEQ 78


>gi|320335830|ref|YP_004172541.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
 gi|319757119|gb|ADV68876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
          Length = 78

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFYIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 +++ N  + 
Sbjct: 61 VPGDQVPFIEKNRAHF 76


>gi|315442042|ref|YP_004074921.1| ferredoxin [Mycobacterium sp. Spyr1]
 gi|315260345|gb|ADT97086.1| ferredoxin [Mycobacterium sp. Spyr1]
          Length = 117

 Score =  100 bits (251), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 1   MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 60

Query: 61  PGLEL--WLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNPGG 110
              E   +L  N+ + T    ++ + E L  P  A   G         +  P  
Sbjct: 61  LPDEELAFLDDNAAFFTT--TLSGRDEPLGDPGGAAKLGRVGADTPLVAALPAS 112


>gi|289756971|ref|ZP_06516349.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T85]
 gi|289712535|gb|EFD76547.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T85]
          Length = 179

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 17/107 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
           M +V+T++C  C    CV  CPV+C +   +         L I P  C+DCG C   CPV
Sbjct: 1   MPHVITQSC--CNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPV 58

Query: 53  DAIKPDTEPGLEL--WLKINSEYATQWPNI-----TTKKESLPSAAK 92
            AI P+T    E   +++IN+ Y  + P       T+K   +  AA+
Sbjct: 59  SAIAPNTRLDFEQLPFVEINASYYPKRPAGVKLAPTSKLAPVTPAAE 105


>gi|29828838|ref|NP_823472.1| ferredoxin [Streptomyces avermitilis MA-4680]
 gi|29605943|dbj|BAC70007.1| putative ferredoxin [Streptomyces avermitilis MA-4680]
          Length = 108

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MTYV+   C+  K   CV  CPVDC YEG   L I PDEC+DCG CEP CPV+AI    D
Sbjct: 1  MTYVIALPCVDVKDRSCVGECPVDCIYEGRRALYIQPDECVDCGACEPVCPVEAIYFEDD 60

Query: 59 TEPGLELWLKINSEYAT 75
                     N+++  
Sbjct: 61 VPAEWGDHRGSNADFFD 77


>gi|331699698|ref|YP_004335937.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326954387|gb|AEA28084.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 112

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M+YV+  +C+      CV+ CPVDC Y G     ++P ECIDCG CEP CPV+AI P+++
Sbjct: 1  MSYVIGASCVDVTDRACVDECPVDCIYVGGRMAYVNPTECIDCGACEPVCPVEAIVPESD 60

Query: 61 --PGLELWLKINSEYA-TQWPNITTKKESLPSAAKMDGV 96
               + ++  N+ +     P       +   A ++  V
Sbjct: 61 VAESEQDFIAANAAFFLEVLPGRDEPLGNPGGAGQVGEV 99


>gi|298242651|ref|ZP_06966458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297555705|gb|EFH89569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 87

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+ CI  +   CV+VCPVDC +        E    L I+PDECIDCG CEP CPV
Sbjct: 1  MAYVITQPCIGVRDASCVDVCPVDCIHPSSNEPGYEEAEQLFINPDECIDCGACEPACPV 60

Query: 53 DAIKPD--TEPGLELWLKINSEYA 74
           AI  +       + ++KIN+E+ 
Sbjct: 61 TAIFEESAVPDEWKSYIKINAEFF 84


>gi|320012828|gb|ADW07678.1| ferredoxin [Streptomyces flavogriseus ATCC 33331]
          Length = 107

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 43/64 (67%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MTYV+ + C+  K   C+E CPVDC YEG   L IHPDEC+DCG CEP CPV+A+  + +
Sbjct: 1  MTYVIAQPCVDIKDKACIEECPVDCIYEGPRKLYIHPDECVDCGACEPVCPVEAVFYEDD 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPAE 64


>gi|108799685|ref|YP_639882.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119868795|ref|YP_938747.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. KMS]
 gi|126435329|ref|YP_001071020.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mycobacterium sp. JLS]
 gi|108770104|gb|ABG08826.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
          MCS]
 gi|119694884|gb|ABL91957.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. KMS]
 gi|126235129|gb|ABN98529.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Mycobacterium sp. JLS]
          Length = 114

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MTYV+   C+      CV  CPVDC YEG+  + I+PDEC+DCG C   C +DAI  +T 
Sbjct: 1  MTYVIGSACVDVVDKSCVPECPVDCIYEGDRVMYINPDECVDCGACRVICKMDAIFYETD 60

Query: 60 -EPGLELWLKINSEYATQWPNITTKKESLP 88
               +  L  N+ + T+   +  +   L 
Sbjct: 61 LPEDQQRHLADNAAFFTE--VLPGRDAPLG 88


>gi|324997878|ref|ZP_08118990.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia sp. P1]
          Length = 104

 Score =  100 bits (249), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          M YVVTE CI  +   C+E CPVDC Y G+  + IHPDEC+DCG C P CP +AI  +  
Sbjct: 1  MAYVVTEACIDVQDRACMEECPVDCIYPGDRMMYIHPDECVDCGKCMPACPSEAIHWEYK 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
                 +++ N+ +          +++ P    
Sbjct: 61 VPAEQAAFVEANAVFVRSHGLTGGGEDADPVGED 94


>gi|170782509|ref|YP_001710842.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157078|emb|CAQ02253.1| ferredoxin [Clavibacter michiganensis subsp. sepedonicus]
          Length = 108

 Score =  100 bits (249), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT V+   C+  K   C++ CPVDC YEGE  L IHPDEC+DCG CEP CPV+AI  +  
Sbjct: 1  MTCVIALPCVDVKDRACIDECPVDCIYEGERSLYIHPDECVDCGACEPVCPVEAIYYEDD 60

Query: 60 -EPGLELWLKINSEYATQ 76
                 +   N E+  +
Sbjct: 61 LPEKWSDYYTANVEFFAE 78


>gi|183982996|ref|YP_001851287.1| ferredoxin FdxA_2 [Mycobacterium marinum M]
 gi|183176322|gb|ACC41432.1| ferredoxin FdxA_2 [Mycobacterium marinum M]
          Length = 114

 Score = 99.8 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
           MTYV+   C+      C + CPVDC YEG   + I+PDEC+DCG C+  C V AI    D
Sbjct: 1   MTYVIGRECVDVAEKSCTQECPVDCIYEGARTMYINPDECVDCGACKTTCRVGAIYWEED 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNPGGK 111
                   L  N+ +  +   +  +   L  P  A   G         +  P   
Sbjct: 61  LPDEQRHHLADNAAFFRE--ILPGRDAPLGSPGGADTVGRIGVDTPLIAAMPPSG 113


>gi|94986311|ref|YP_605675.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
          DSM 11300]
 gi|94556592|gb|ABF46506.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
          geothermalis DSM 11300]
          Length = 78

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFVIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
             G E +   N  + 
Sbjct: 61 VPAGEEEFTLKNRAFF 76


>gi|168700895|ref|ZP_02733172.1| ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 92

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +VVT  C+ C++TDCV VCP++CFY  E  L I PD+CIDCG C PECPV+AI    D
Sbjct: 1  MAHVVTAPCVGCRYTDCVVVCPMECFYGDERQLYIDPDDCIDCGACAPECPVEAIFLDGD 60

Query: 59 TEPGLELWLKINSEYATQWPNITTK 83
                 ++ +N++       +  +
Sbjct: 61 VPAKWSDFVPLNADRVKALKPLGAR 85


>gi|296138878|ref|YP_003646121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296027012|gb|ADG77782.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 108

 Score = 99.8 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 10/110 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           MTY + E C+      C+E CPVDC YEG   L I PDEC+DCG CEP CPV+AI  +  
Sbjct: 1   MTYTIAEPCVDVLDKACIEECPVDCIYEGNRMLYIQPDECVDCGACEPVCPVEAIFYEDD 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
                  ++  N ++  +           P  A   G       +    P
Sbjct: 61  VPDEWSEYVTANIDFFNE--------VGSPGGAAKTGKIDYDHPFIKALP 102


>gi|315226089|ref|ZP_07867877.1| ferredoxin [Parascardovia denticolens DSM 10105]
 gi|315120221|gb|EFT83353.1| ferredoxin [Parascardovia denticolens DSM 10105]
          Length = 119

 Score = 99.5 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CV+ CPVDC YE    L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 12 MAYVIAEPCVDVKDKACVDECPVDCIYEAPRTLYINPNECVDCGACEPVCPTEAIFYEDD 71

Query: 61 -PGLELWLKINSE 72
           P   +W K  +E
Sbjct: 72 LPDEWVWYKDAAE 84


>gi|119960623|ref|YP_946862.1| ferredoxin [Arthrobacter aurescens TC1]
 gi|119947482|gb|ABM06393.1| ferredoxin [Arthrobacter aurescens TC1]
          Length = 106

 Score = 99.5 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M+YV+ + C+  K   C++ CPVDC YEG+  L IHP EC+DCG C+P CPV+AI    D
Sbjct: 1  MSYVIAQPCVDVKDRACIQECPVDCIYEGDRSLYIHPSECVDCGACDPVCPVEAIYYADD 60

Query: 59 TEPGLELWLKINSEYATQ 76
                 ++  + E+  +
Sbjct: 61 VPDEWADYVMASVEFFEE 78


>gi|218288541|ref|ZP_03492818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|258511869|ref|YP_003185303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|218241198|gb|EED08373.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius LAA1]
 gi|257478595|gb|ACV58914.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
          Length = 79

 Score = 99.5 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
          M +V+T  CI  K  DCVE CPVD  +EG +   I PD CIDC  CEP CPV+AI  +  
Sbjct: 1  MPFVITSPCIGEKAADCVETCPVDAIHEGPDQYYIDPDLCIDCAACEPVCPVNAIYQEEF 60

Query: 59 TEPGLELWLKINSEYAT 75
               + +++ N  +  
Sbjct: 61 VPEDEKEFIEKNRNFFR 77


>gi|120401325|ref|YP_951154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119954143|gb|ABM11148.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 117

 Score = 99.1 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           MTYV+   C+      CV+ CP DC YEG+  + I+P+EC+DCG C   C VDAI  +T+
Sbjct: 1   MTYVIGSACVDIVDKSCVQECPADCIYEGDRAMYINPNECVDCGACRIACRVDAIYYETD 60

Query: 61  PGLE--LWLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNP 108
              E   +L+ N+ + T    +  +   L  P  A   G         +  P
Sbjct: 61  LPDEEMEFLEDNAAFFT--MTLAGRDAPLGDPGGAAKVGRVGADTPLVAALP 110


>gi|17942775|pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
          Ferredoxins: High Resolution Crystal Structure Of The
          Seven-Iron Ferredoxin From Thermus Thermophilus
          Length = 78

 Score = 99.1 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DT 59
           +V+ E CI  K   CVEVCPV+C Y+G +   IHP+ECIDCG C P CPV+AI P  D 
Sbjct: 1  PHVICEPCIGVKDQSCVEVCPVECIYDGGDQFYIHPEECIDCGACVPACPVNAIYPEEDV 60

Query: 60 EPGLELWLKINSEYA 74
              + +++ N + A
Sbjct: 61 PEQWKSYIEKNRKLA 75


>gi|218507913|ref|ZP_03505791.1| ferredoxin III protein [Rhizobium etli Brasil 5]
          Length = 59

 Score = 99.1 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 55/59 (93%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MTYVVT+NCI CK+TDCVEVCPVDCFYEGENFL IHPDECIDCGVCEPE P +AIKPDT
Sbjct: 1  MTYVVTDNCIKCKYTDCVEVCPVDCFYEGENFLVIHPDECIDCGVCEPESPAEAIKPDT 59


>gi|325284128|ref|YP_004256669.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
 gi|324315937|gb|ADY27052.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
          Length = 78

 Score = 98.7 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  CI  K   C EVCPV+C Y+G +   IHPDECIDCG C P CPV+AI P  D
Sbjct: 1  MPHVITSPCIGVKDQACTEVCPVECIYDGGDQFLIHPDECIDCGACVPACPVNAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
                 ++  N+ + 
Sbjct: 61 VPADETPFIAKNAAFF 76


>gi|111024041|ref|YP_707013.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110823571|gb|ABG98855.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 467

 Score = 98.7 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          MT+VV  +C  CK   CV VCP +C +             L I P  CIDC  C   CP 
Sbjct: 1  MTHVVLGHC--CKDASCVRVCPQNCIHPAPGEAGFESAETLFIDPRSCIDCTACVEACPA 58

Query: 53 DAIKPDTEP--GLELWLKINSEYATQWPNITTKKE 85
           AIKP+         +   N+EY  Q P  +  + 
Sbjct: 59 SAIKPEWTLTITERPYAARNAEYFEQTPAKSRPRA 93


>gi|313902860|ref|ZP_07836256.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter subterraneus DSM 13965]
 gi|313466795|gb|EFR62313.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermaerobacter subterraneus DSM 13965]
          Length = 78

 Score = 98.7 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   C EVCPVDC YEG++ L I+P+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGVKDKSCQEVCPVDCIYEGDDQLYINPEECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYATQ 76
               + +++ N ++  Q
Sbjct: 61 VPEQWKSYIEKNRKFFEQ 78


>gi|221633402|ref|YP_002522627.1| hypothetical protein trd_1422 [Thermomicrobium roseum DSM 5159]
 gi|221155410|gb|ACM04537.1| conserved domain protein [Thermomicrobium roseum DSM 5159]
          Length = 83

 Score = 98.7 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYV+ E CI  K   CVEVCPVDC           I+PDECIDCGVC   CPV+AI  +
Sbjct: 1  MTYVIAEPCIGVKDASCVEVCPVDCIKSDPEAEQYFINPDECIDCGVCAEVCPVEAIYFE 60

Query: 59 T--EPGLELWLKINSEYATQ 76
                   +L+ N EY  +
Sbjct: 61 DDLPEQWRHYLQKNREYFQK 80


>gi|229818391|ref|ZP_04448672.1| hypothetical protein BIFANG_03696 [Bifidobacterium angulatum DSM
          20098]
 gi|229784261|gb|EEP20375.1| hypothetical protein BIFANG_03696 [Bifidobacterium angulatum DSM
          20098]
          Length = 111

 Score = 98.7 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 7  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 66

Query: 61 -PGLELWLKINS 71
           P    W K  +
Sbjct: 67 LPDEWAWYKDAA 78


>gi|158318597|ref|YP_001511105.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Frankia sp. EAN1pec]
 gi|4325127|gb|AAD17275.1| ferredoxin I [Frankia sp. EuIK1]
 gi|158114002|gb|ABW16199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EAN1pec]
          Length = 113

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YVVT  CI  K T C++ CPVD  YEG+  L I+P+EC +CG C   CP+ AI  D E
Sbjct: 1   MPYVVTSPCIDVKDTACLDECPVDAIYEGDRKLYINPNECTECGACASACPIGAIMLDLE 60

Query: 61  PG--LELWLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNPGG 110
                  ++K   E+ T+   +  + E L  P  AK  G  +    + +     
Sbjct: 61  VPKAERPFVKSEKEFFTK--VLPGRDEPLGDPGGAKTVGKIKADTPFVAEYEAS 112


>gi|269836661|ref|YP_003318889.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphaerobacter thermophilus DSM 20745]
 gi|269785924|gb|ACZ38067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sphaerobacter thermophilus DSM 20745]
          Length = 80

 Score = 98.3 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYV+ E CI  K   CVEVCPVDC +  +      I PDECIDCGVC   CPV+AI  +
Sbjct: 1  MTYVIAEPCIGVKDASCVEVCPVDCIHSDDEAEQYYIDPDECIDCGVCAEVCPVEAIFFE 60

Query: 59 T--EPGLELWLKINSEYATQ 76
                   +L+IN EY  +
Sbjct: 61 DDLPEQWADFLRINREYFQK 80


>gi|226349641|ref|YP_002776755.1| 7Fe ferredoxin [Rhodococcus opacus B4]
 gi|226245556|dbj|BAH55903.1| 7Fe ferredoxin [Rhodococcus opacus B4]
          Length = 104

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+ E C+      C+E CPVDC YEG   L IH +ECIDCG CEP CPV AI+P   
Sbjct: 1  MAFVIGEPCVDVMDKSCIEECPVDCIYEGGRMLYIHQNECIDCGACEPVCPVSAIRPAQK 60

Query: 59 TEPGLELWLKINSE 72
           +   + + + + E
Sbjct: 61 VDEQWQPFQESSRE 74


>gi|294790482|ref|ZP_06755640.1| ferredoxin [Scardovia inopinata F0304]
 gi|294458379|gb|EFG26732.1| ferredoxin [Scardovia inopinata F0304]
          Length = 111

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CVE CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MAYVIAEPCVDVKDKACVEECPVDCIYEGPRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 -PGLELWLKINS 71
           P    W K  +
Sbjct: 61 LPDDWAWYKDAA 72


>gi|312138771|ref|YP_004006107.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311888110|emb|CBH47422.1| putative ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 470

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M +V+  +C  CK   CV VCP +C +             L I PD CIDC  C   CP 
Sbjct: 1  MAHVILGHC--CKDASCVRVCPQNCIHPAPGEDGFASTETLYIDPDSCIDCTACVDACPA 58

Query: 53 DAIKPD--TEPGLELWLKINSEYATQWPNITTKKESL 87
           A+K +    P    +   N E+  Q P  T  +  L
Sbjct: 59 SAVKSEHALTPAELPYAARNREFFAQAPAATRTRSRL 95


>gi|310288040|ref|YP_003939299.1| Ferredoxin [Bifidobacterium bifidum S17]
 gi|309251977|gb|ADO53725.1| Ferredoxin [Bifidobacterium bifidum S17]
          Length = 107

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 -PGLELWLKINS 71
           P    W K  +
Sbjct: 61 LPDEWAWYKDAA 72


>gi|224283694|ref|ZP_03647016.1| Ferredoxin [Bifidobacterium bifidum NCIMB 41171]
 gi|311064916|ref|YP_003971642.1| ferredoxin [Bifidobacterium bifidum PRL2010]
 gi|313140850|ref|ZP_07803043.1| ferredoxin [Bifidobacterium bifidum NCIMB 41171]
 gi|310867236|gb|ADP36605.1| FdxC Ferredoxin [Bifidobacterium bifidum PRL2010]
 gi|313133360|gb|EFR50977.1| ferredoxin [Bifidobacterium bifidum NCIMB 41171]
          Length = 107

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 -PGLELWLKINS 71
           P    W K  +
Sbjct: 61 LPDEWAWYKDAA 72


>gi|229488683|ref|ZP_04382549.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
 gi|229324187|gb|EEN89942.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
          Length = 543

 Score = 97.9 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEY 73
          +C+   P +  +     L I PD CIDCG C  ECPV+AI PD E       +L++N+ Y
Sbjct: 5  NCIHPTPDEAPFATTEMLYIDPDTCIDCGACVDECPVEAIFPDNELDEDDAPYLQMNASY 64

Query: 74 ATQWP 78
            + P
Sbjct: 65 FEKHP 69


>gi|255744608|ref|ZP_05418559.1| ferredoxin [Vibrio cholera CIRS 101]
 gi|261212100|ref|ZP_05926386.1| ferredoxin [Vibrio sp. RC341]
 gi|262161260|ref|ZP_06030371.1| ferredoxin [Vibrio cholerae INDRE 91/1]
 gi|262192462|ref|ZP_06050613.1| ferredoxin [Vibrio cholerae CT 5369-93]
 gi|255737639|gb|EET93033.1| ferredoxin [Vibrio cholera CIRS 101]
 gi|260838708|gb|EEX65359.1| ferredoxin [Vibrio sp. RC341]
 gi|262029010|gb|EEY47663.1| ferredoxin [Vibrio cholerae INDRE 91/1]
 gi|262031621|gb|EEY50208.1| ferredoxin [Vibrio cholerae CT 5369-93]
          Length = 75

 Score = 97.9 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C PEC   AI  + E      +++++N+E A  WPN+T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVPECTAQAIFQEDELVGDQRIFIELNAELAEHWPNLTEVKPAMEDA 60

Query: 91  AKMDGVKQKYEKY 103
           AK DGV  K +  
Sbjct: 61  AKWDGVPNKLDML 73


>gi|324997613|ref|ZP_08118725.1| ferredoxin--NADP+ reductase [Pseudonocardia sp. P1]
          Length = 498

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV  CPV+C +   +         L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CTDASCVAACPVNCIHPTPDEPDYTTTDMLYIDPRACIDCGACADACPV 58

Query: 53 DAIKPDTEPGLEL--WLKINSEYATQWPN 79
          DA+ P       L  +  +N+ Y    P 
Sbjct: 59 DAVFPVERLSASLAGYADVNAAYYDGKPV 87


>gi|325676533|ref|ZP_08156211.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|325552711|gb|EGD22395.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 470

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
          M +V+  +C  CK   CV VCP +C +             L I PD CIDC  C   CP 
Sbjct: 1  MAHVILGHC--CKDASCVRVCPQNCIHPAPGEDGFASTETLYIDPDSCIDCTACVDACPA 58

Query: 53 DAIKPD--TEPGLELWLKINSEYATQWPNITTKKESL 87
           A+K +    P    +   N E+  Q P  T  +  L
Sbjct: 59 SAVKSEHALTPAELPYAARNREFFAQAPAATRTRSRL 95


>gi|291457166|ref|ZP_06596556.1| ferredoxin [Bifidobacterium breve DSM 20213]
 gi|291381001|gb|EFE88519.1| ferredoxin [Bifidobacterium breve DSM 20213]
          Length = 106

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|288918987|ref|ZP_06413329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EUN1f]
 gi|288349633|gb|EFC83868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EUN1f]
          Length = 113

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           M YVVT  CI  K   C++ CPVD  YEG   L I+P+EC +CG C   CP+ AI  D  
Sbjct: 1   MPYVVTSPCIDVKDGACLDECPVDAIYEGARKLYINPNECTECGACASACPIGAIMLDLE 60

Query: 59  TEPGLELWLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSP 106
                  ++K + E+ ++   +  + E L  P  AK  G       + + 
Sbjct: 61  VPKPERPFVKTDKEFFSK--ALPGRDEPLGDPGGAKAAGKIGVDTPFVAE 108


>gi|23466115|ref|NP_696718.1| ferredoxin [Bifidobacterium longum NCC2705]
 gi|189440546|ref|YP_001955627.1| Ferredoxin [Bifidobacterium longum DJO10A]
 gi|227546453|ref|ZP_03976502.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239620993|ref|ZP_04664024.1| ferredoxin [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454888|ref|YP_003662032.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|312133853|ref|YP_004001192.1| ferredoxin [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483015|ref|ZP_07942017.1| 4Fe-4S binding domain-containing protein [Bifidobacterium sp.
          12_1_47BFAA]
 gi|322689945|ref|YP_004209679.1| ferredoxin [Bifidobacterium longum subsp. infantis 157F]
 gi|322691886|ref|YP_004221456.1| ferredoxin [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326849|gb|AAN25354.1| ferredoxin [Bifidobacterium longum NCC2705]
 gi|189428981|gb|ACD99129.1| Ferredoxin [Bifidobacterium longum DJO10A]
 gi|227213110|gb|EEI80989.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|239516094|gb|EEQ55961.1| ferredoxin [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184320|gb|ADH01202.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. longum JDM301]
 gi|311773144|gb|ADQ02632.1| Ferredoxin [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915516|gb|EFV36936.1| 4Fe-4S binding domain-containing protein [Bifidobacterium sp.
          12_1_47BFAA]
 gi|320456742|dbj|BAJ67364.1| ferredoxin [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320461281|dbj|BAJ71901.1| ferredoxin [Bifidobacterium longum subsp. infantis 157F]
          Length = 106

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|213693103|ref|YP_002323689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524564|gb|ACJ53311.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320459280|dbj|BAJ69901.1| ferredoxin [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 106

 Score = 97.5 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|171741293|ref|ZP_02917100.1| hypothetical protein BIFDEN_00369 [Bifidobacterium dentium ATCC
          27678]
 gi|283455347|ref|YP_003359911.1| fdxC Ferredoxin [Bifidobacterium dentium Bd1]
 gi|306823586|ref|ZP_07456961.1| ferredoxin [Bifidobacterium dentium ATCC 27679]
 gi|309803019|ref|ZP_07697120.1| ferredoxin [Bifidobacterium dentium JCVIHMP022]
 gi|171276907|gb|EDT44568.1| hypothetical protein BIFDEN_00369 [Bifidobacterium dentium ATCC
          27678]
 gi|283101981|gb|ADB09087.1| fdxC Ferredoxin [Bifidobacterium dentium Bd1]
 gi|304553293|gb|EFM41205.1| ferredoxin [Bifidobacterium dentium ATCC 27679]
 gi|308220486|gb|EFO76797.1| ferredoxin [Bifidobacterium dentium JCVIHMP022]
          Length = 106

 Score = 97.5 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVIAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|154486719|ref|ZP_02028126.1| hypothetical protein BIFADO_00543 [Bifidobacterium adolescentis
          L2-32]
 gi|154084582|gb|EDN83627.1| hypothetical protein BIFADO_00543 [Bifidobacterium adolescentis
          L2-32]
          Length = 106

 Score = 97.1 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVV + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVVAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|294786512|ref|ZP_06751766.1| ferredoxin [Parascardovia denticolens F0305]
 gi|294485345|gb|EFG32979.1| ferredoxin [Parascardovia denticolens F0305]
          Length = 108

 Score = 97.1 bits (241), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CV+ CPVDC YE    L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MAYVIAEPCVDVKDKACVDECPVDCIYEAPRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 -PGLELWLKINSE 72
           P   +W K  +E
Sbjct: 61 LPDEWVWYKDAAE 73


>gi|119025314|ref|YP_909159.1| ferredoxin [Bifidobacterium adolescentis ATCC 15703]
 gi|212716645|ref|ZP_03324773.1| hypothetical protein BIFCAT_01575 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225351077|ref|ZP_03742100.1| hypothetical protein BIFPSEUDO_02660 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|118764898|dbj|BAF39077.1| ferredoxin [Bifidobacterium adolescentis ATCC 15703]
 gi|212660349|gb|EEB20924.1| hypothetical protein BIFCAT_01575 [Bifidobacterium catenulatum
          DSM 16992]
 gi|225158533|gb|EEG71775.1| hypothetical protein BIFPSEUDO_02660 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 106

 Score = 96.8 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YVV + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MPYVVAQPCVDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPDEW 65


>gi|261338294|ref|ZP_05966178.1| ferredoxin [Bifidobacterium gallicum DSM 20093]
 gi|270276957|gb|EFA22811.1| ferredoxin [Bifidobacterium gallicum DSM 20093]
          Length = 107

 Score = 96.8 bits (240), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 41/65 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ + C+  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + +
Sbjct: 1  MAYVIAQPCVDVKDKACVDECPVDCIYEGVRTLYINPNECVDCGACEPVCPTEAIFYEDD 60

Query: 61 PGLEL 65
             E 
Sbjct: 61 LPEEW 65


>gi|269837836|ref|YP_003320064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Sphaerobacter thermophilus DSM 20745]
 gi|269787099|gb|ACZ39242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sphaerobacter thermophilus DSM 20745]
          Length = 80

 Score = 96.4 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYV+ + CI  K   CVEVCPVDC +  +      I+PDECIDCGVC   CPV+AI  +
Sbjct: 1  MTYVIAQPCIGLKDASCVEVCPVDCIHSDDEAEQYFINPDECIDCGVCAEVCPVEAIFFE 60

Query: 59 T--EPGLELWLKINSEYATQ 76
                   +L+IN EY  +
Sbjct: 61 DDLPEQWADFLRINREYFQK 80


>gi|146337764|ref|YP_001202812.1| ferredoxin II (fragment) [Bradyrhizobium sp. ORS278]
 gi|146190570|emb|CAL74572.1| ferredoxin II (fragment) [Bradyrhizobium sp. ORS278]
          Length = 68

 Score = 96.4 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 48/68 (70%)

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           +CEPECP DAIKPDTEPGLE WL +N+EYA  WPNIT KK+    A + DG   K+EKYF
Sbjct: 1   MCEPECPADAIKPDTEPGLEKWLGVNAEYAKSWPNITQKKDPPGDAKEHDGEDGKFEKYF 60

Query: 105 SPNPGGKN 112
           S   G  +
Sbjct: 61  SSKAGAGD 68


>gi|118592808|ref|ZP_01550197.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Stappia aggregata
          IAM 12614]
 gi|118434578|gb|EAV41230.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Stappia aggregata
          IAM 12614]
          Length = 115

 Score = 96.4 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  ++   CI  K   C   CPVDC YEGE    IHP+ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MALIIKSECIDVKDGICTTSCPVDCIYEGERMFYIHPEECIECGMCESICPVDAIRYDDE 60

Query: 61 --PGLELWLKINSEYAT 75
                 +++IN +   
Sbjct: 61 VTGADRAFVEINKDVFQ 77


>gi|111220922|ref|YP_711716.1| ferredoxin [Frankia alni ACN14a]
 gi|111148454|emb|CAJ60125.1| Ferredoxin (partial match) [Frankia alni ACN14a]
          Length = 140

 Score = 96.4 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 3/115 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M YV+T  C+      CV+ CPVDC YEG   L IHP+ECIDCG C   CPVDAI  + +
Sbjct: 1   MVYVITAACLDVTDRSCVDECPVDCVYEGRRKLYIHPEECIDCGACARVCPVDAIVWERD 60

Query: 61  PGLELWLKINSEYATQWPNITTKKES---LPSAAKMDGVKQKYEKYFSPNPGGKN 112
              +    +   +A  +  ++ + +       A  +  V    +   +  P   +
Sbjct: 61  LDGDGHAHLGDAHAFFYRPLSGRPKPIGAPGGAGMLGPVGVDTDLVTAARPAVGD 115


>gi|226357256|ref|YP_002786996.1| ferredoxin [Deinococcus deserti VCD115]
 gi|226319246|gb|ACO47242.1| putative ferredoxin [Deinococcus deserti VCD115]
          Length = 78

 Score = 96.4 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+   CI  K   C EVCPV+C Y+      IHPDECIDCG C P CPV AI P  D
Sbjct: 1  MPHVIVSPCIGTKDQACTEVCPVECIYDAGEMFLIHPDECIDCGACVPACPVSAIFPEED 60

Query: 59 TEPGLELWLKINSEYA 74
             G E ++  N E+ 
Sbjct: 61 VPAGEESFIARNREHF 76


>gi|168703585|ref|ZP_02735862.1| ferredoxin [Gemmata obscuriglobus UQM 2246]
          Length = 103

 Score = 96.4 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 8/94 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          M +VVT NC  CK+TDC  VCPV+CFY+ E  L I P++CIDC  C PECPV+AI   P+
Sbjct: 1  MPHVVTSNCNDCKYTDCCVVCPVECFYQDETMLYIDPEDCIDCEACVPECPVEAIYSEPN 60

Query: 59 TEPGLELWLKINSEYATQWP------NITTKKES 86
                 ++++N+E A+         +IT K  +
Sbjct: 61 VPSQWSSFIQLNAERASALKSAGGDAHITEKAPA 94


>gi|117164510|emb|CAJ88056.1| putative ferredoxin reductase [Streptomyces ambofaciens ATCC
          23877]
          Length = 510

 Score = 96.0 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C               L I P  CIDCG C   CPV
Sbjct: 1  MAFAITQTC--CSDATCVSVCPVNCIRPTPEEQAFGSTEMLHIDPKTCIDCGACADACPV 58

Query: 53 DAIKP--DTEPGLELWLKIN 70
          DAI P      G   +  +N
Sbjct: 59 DAIFPVESLTAGQREYADMN 78


>gi|313902219|ref|ZP_07835626.1| ferredoxin [Thermaerobacter subterraneus DSM 13965]
 gi|313467499|gb|EFR63006.1| ferredoxin [Thermaerobacter subterraneus DSM 13965]
          Length = 82

 Score = 96.0 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E CI  K   CVEVCPVDC YEGE+   IHP+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCIGTKDQSCVEVCPVDCIYEGEDQFFIHPEECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYATQ 76
               E + +   ++  +
Sbjct: 61 VPEQWEHYKEKARKFFEE 78


>gi|307323385|ref|ZP_07602595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
 gi|306890874|gb|EFN21850.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Streptomyces violaceusniger Tu 4113]
          Length = 106

 Score = 96.0 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 42/90 (46%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+  +C+      C+E CPVDC YEGE  L I+P ECIDCG CE  CP  AI  D +
Sbjct: 1  MAYVIGASCVDIMDRSCMEECPVDCIYEGERKLYINPVECIDCGACEVACPEQAITVDRK 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSA 90
             E        +    P       +   A
Sbjct: 61 ADPEHRADNRRFFEEVLPGRDAPLGTPGGA 90


>gi|296120281|ref|YP_003628059.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296012621|gb|ADG65860.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 84

 Score = 96.0 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          MT VVTE C  CK   C+ VCP DCF+E    + I+P+ECIDC  C  ECPV AI  +  
Sbjct: 1  MTMVVTEPCRGCKDKACLVVCPCDCFHEDAEMVYINPEECIDCDACVSECPVSAIFHEDN 60

Query: 60 -EPGLELWLKINSEYATQWP 78
               + ++++N++ +   P
Sbjct: 61 VPAQWQHFVELNAQRSRVCP 80


>gi|111226128|ref|YP_716922.1| ferredoxin [Frankia alni ACN14a]
 gi|111153660|emb|CAJ65420.1| Ferredoxin [Frankia alni ACN14a]
          Length = 111

 Score = 96.0 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          MT+VVT  CI  K T C+  CPVDC YEG   L I+P+ECIDCG CE  CPVDAI     
Sbjct: 1  MTFVVTSACIDVKDTACLGECPVDCIYEGVRKLYINPNECIDCGACESACPVDAIMSVRL 60

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPS 89
                 ++   + + T    +  +   +  
Sbjct: 61 VPRAEAEFVVDEARFFTT--ILPGRDAPVGD 89


>gi|163745320|ref|ZP_02152680.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
          indolifex HEL-45]
 gi|161382138|gb|EDQ06547.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
          indolifex HEL-45]
          Length = 115

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  ++T  CI  K   C   CPVDC YEGE    IHP ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MPLIITSACIDVKDGICTTSCPVDCIYEGERMFYIHPTECIECGMCESICPVDAIRYDDE 60

Query: 61 P--GLELWLKINSEYA 74
                 +++IN+E  
Sbjct: 61 ATGAEAKFVRINAEAF 76


>gi|15865463|emb|CAC81334.1| putative ferredoxin [Pseudomonas sp. KIE171]
          Length = 112

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPDT 59
           M YV+++ CI  +   CV+VCPVDC YE E  L I PDEC +CG CE  CPV AI   D 
Sbjct: 1   MPYVISDPCIKSRDQACVDVCPVDCIYEAEGRLWIQPDECTECGACESVCPVTAICYVDA 60

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
           E   +   +    + T  P       S   A K+  +K  + +  
Sbjct: 61  ESDDQDLREAREFFDTVLPGCDGPIGSPRGAQKVGRIKSDHPRVL 105


>gi|119977|sp|P03941|FER_ALIAC RecName: Full=Ferredoxin
          Length = 78

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--T 59
           +V+T  CI  K  DCVE CPVD  +EG +   I PD CIDC  CEP CPV+AI  +   
Sbjct: 1  PFVITSPCIGEKAADCVETCPVDAIHEGPDQYYIDPDLCIDCAACEPVCPVNAIYQEEFV 60

Query: 60 EPGLELWLKINSEYAT 75
              + +++ N  +  
Sbjct: 61 PEDEKEFIEKNRNFFR 76


>gi|254184178|ref|ZP_04890768.1| putative ferredoxin [Burkholderia pseudomallei 1655]
 gi|184214709|gb|EDU11752.1| putative ferredoxin [Burkholderia pseudomallei 1655]
          Length = 70

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT+VVTE CI CK+TDCV+VCPVDCF EG NFLAI PDECIDC VC  ECP +AI    D
Sbjct: 1  MTHVVTEACIKCKYTDCVDVCPVDCFREGPNFLAIDPDECIDCAVCVAECPTNAIYAEED 60

Query: 59 TEPGLELWLK 68
               + +  
Sbjct: 61 VPGDQQHFTA 70


>gi|284033073|ref|YP_003383004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812366|gb|ADB34205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
           flavida DSM 17836]
          Length = 499

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPV 52
           MTYV+  +C  C    CV  CP++C +           + L I P  CIDCG C   CPV
Sbjct: 1   MTYVIAGDC--CADARCVSACPMNCIHPSPGEPGFGTTDGLFIDPRTCIDCGACAEVCPV 58

Query: 53  DAIKPDTEPGLELWLKINSEYATQWPNITTKKE---SLPSAAKMDG 95
           DA +P  +    + + +N+ Y  + P +          P   +  G
Sbjct: 59  DAAQP-ADKAAPIDVALNAAYFAERPAVDALDLDAWEPPRFDRWTG 103


>gi|307610629|emb|CBX00217.1| hypothetical protein LPW_19621 [Legionella pneumophila 130b]
          Length = 78

 Score = 95.6 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           IHPDECIDC +CEPECPV+AI  + +     + + ++N+E +  WPNIT KK++   A  
Sbjct: 2   IHPDECIDCALCEPECPVNAIVSEDDLTEEQQQFKELNAELSKTWPNITAKKDAPSDAKD 61

Query: 93  MDGVKQKYE 101
            + VK K +
Sbjct: 62  WEEVKDKLQ 70


>gi|111223262|ref|YP_714056.1| ferredoxin [Frankia alni ACN14a]
 gi|111150794|emb|CAJ62498.1| Ferredoxin [Frankia alni ACN14a]
          Length = 115

 Score = 95.2 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 45/89 (50%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T  CI  K   C+E CP DC YEG+  + I+PDEC +CG C   CPV A   D  
Sbjct: 5  MPYVITAACIDVKDGSCLEGCPADCIYEGDRKMYINPDECTECGACAVSCPVGAALSDDR 64

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPS 89
             +    I+SE A     +  + E L  
Sbjct: 65 VKAKDKEFIDSEAAFFTDILPGRDEPLGE 93


>gi|148359470|ref|YP_001250677.1| ferredoxin I [Legionella pneumophila str. Corby]
 gi|148281243|gb|ABQ55331.1| ferredoxin I [Legionella pneumophila str. Corby]
          Length = 78

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           IHPDECIDC +CEPECPV+AI  + +     + + ++N+E +  WPNIT KK++   A  
Sbjct: 2   IHPDECIDCALCEPECPVNAIVSEDDLTDEQQQFKELNAELSKTWPNITAKKDAPSDAKD 61

Query: 93  MDGVKQKYE 101
            + VK K +
Sbjct: 62  WEEVKDKLQ 70


>gi|313679357|ref|YP_004057096.1| ferredoxin [Oceanithermus profundus DSM 14977]
 gi|313152072|gb|ADR35923.1| ferredoxin [Oceanithermus profundus DSM 14977]
          Length = 82

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +++ E C+  K   CVEVCPV+C YE     + L IHP+ECIDCG C P CPV AI P
Sbjct: 1  MAHIICEPCVGVKDKACVEVCPVECIYEAPAEYDMLYIHPEECIDCGACVPACPVSAIFP 60

Query: 58 --DTEPGLELWLKINSEYA 74
            D     + ++ +N + A
Sbjct: 61 EEDVPEQWKSYIDLNYKLA 79


>gi|317122522|ref|YP_004102525.1| ferredoxin [Thermaerobacter marianensis DSM 12885]
 gi|315592502|gb|ADU51798.1| ferredoxin [Thermaerobacter marianensis DSM 12885]
          Length = 82

 Score = 95.2 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+ E C+  K   CVEVCPVDC YEGE+   IHP+ECI C  C   CPV+AI  + E
Sbjct: 1  MIYVICEPCVGTKDQSCVEVCPVDCIYEGEDQFFIHPEECIGCSACAAVCPVEAIYDEDE 60

Query: 61 --PGLELWLKINSEYATQ 76
               E + +   ++  +
Sbjct: 61 VPEQWEHYKEKARKFFEE 78


>gi|302547666|ref|ZP_07300008.1| ferredoxin [Streptomyces hygroscopicus ATCC 53653]
 gi|302465284|gb|EFL28377.1| ferredoxin [Streptomyces himastatinicus ATCC 53653]
          Length = 108

 Score = 94.4 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 40/90 (44%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+   C+      C+E CPVDC YEG   L I+P ECIDCG CE  CP  AI  D  
Sbjct: 1  MAYVIGPACVDIMDRSCMEECPVDCIYEGMRKLYINPVECIDCGACETACPEQAIAVDRL 60

Query: 61 PGLELWLKINSEYATQWPNITTKKESLPSA 90
             E        +    P  T    +   A
Sbjct: 61 AKPEHREDNRRFFTEPLPGRTEPLGTPGGA 90


>gi|86741719|ref|YP_482119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
 gi|86568581|gb|ABD12390.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
          Length = 111

 Score = 93.7 bits (232), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M +V+T  CI  K   C+E CP DC YEG+  + I+PDEC +CG C   CPV A   D  
Sbjct: 1   MPFVITAACIDVKDGSCLEGCPADCIYEGDRKMYINPDECTECGACAVSCPVGAAISDDR 60

Query: 60  -EPGLELWLKINS-EYATQWPNITTKKESLPSAAKMDGVK 97
                + +++  +  ++   P           A K+  +K
Sbjct: 61  VPAKDKEFIESEALFFSAVLPGRDAPLGEPGGATKLGKIK 100


>gi|108804037|ref|YP_643974.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108765280|gb|ABG04162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 87

 Score = 93.3 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M YV+TE CI  K+T CV VCPVDC Y+  +   I+P+ECIDC +C P+CPV+AI P   
Sbjct: 1  MAYVITEACIGTKNTACVAVCPVDCIYDAGDQYVINPEECIDCSMCMPQCPVEAIYPGDQ 60

Query: 60 -EPGLELWLKINSEY 73
              L  + K  ++ 
Sbjct: 61 VPDDLRHYAKKAADL 75


>gi|325121599|gb|ADY81122.1| 7-Fe ferredoxin [Acinetobacter calcoaceticus PHEA-2]
          Length = 74

 Score = 93.3 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+PDECIDC +CEPECP +AI  + E   G E+++++N+E + +WPNIT   +      +
Sbjct: 2   INPDECIDCALCEPECPANAIFSEDELPEGQEVFIELNAELSQKWPNITQIGDQPADREE 61

Query: 93  MDGVKQKYE 101
            +G   K +
Sbjct: 62  WNGKPDKLQ 70


>gi|326384264|ref|ZP_08205946.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197129|gb|EGD54321.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 546

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEY 73
          +C+   P +  +     L I P+ CIDCG C  ECPV AI PD       E +L+IN++Y
Sbjct: 7  NCIHPTPDEPDFLTAEMLYIDPETCIDCGACIDECPVSAIYPDDQLPEKEEPFLQINADY 66

Query: 74 ATQWPN----ITTKKES-LPS 89
                    +   K   LP 
Sbjct: 67 YKDHDVEGGLVRHPKAPKLPD 87


>gi|254823188|ref|ZP_05228189.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          intracellulare ATCC 13950]
          Length = 498

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LELWLKINSE 72
           +C+   P +  +     L I P  C+DCG C   CPV AI PDT        +++IN+ 
Sbjct: 1  MNCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDTRLDTNQLPFVEINAS 60

Query: 73 YATQWPNITTKKESLPSAAKMDGV 96
          +  + P      E LP  +K+  V
Sbjct: 61 FYPKRPE----GEKLPPTSKLAPV 80


>gi|126641295|ref|YP_001084279.1| 7-Fe ferredoxin [Acinetobacter baumannii ATCC 17978]
 gi|213156378|ref|YP_002318798.1| ferredoxin-1 [Acinetobacter baumannii AB0057]
 gi|215483972|ref|YP_002326197.1| Ferredoxin 1 [Acinetobacter baumannii AB307-0294]
 gi|213055538|gb|ACJ40440.1| ferredoxin-1 [Acinetobacter baumannii AB0057]
 gi|213987413|gb|ACJ57712.1| Ferredoxin 1 [Acinetobacter baumannii AB307-0294]
 gi|322507872|gb|ADX03326.1| fdxA [Acinetobacter baumannii 1656-2]
 gi|323517469|gb|ADX91850.1| ferredoxin [Acinetobacter baumannii TCDC-AB0715]
          Length = 74

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+PDECIDC +CEPECP +AI  + E   G E+++++N+E + +WPNIT   E      +
Sbjct: 2   INPDECIDCALCEPECPANAIFSEDELPEGQEVFIELNAELSQKWPNITQIGEQPADREE 61

Query: 93  MDGVKQKYE 101
            +G   K +
Sbjct: 62  WNGKPDKLQ 70


>gi|269784345|emb|CBH51374.1| ferredoxin [Amycolatopsis balhimycina]
          Length = 137

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           M YV+   C+  K   CV  CP DC YEG   L IHPDEC++CG CE  CPV A+  +  
Sbjct: 1   MAYVIGLPCVDVKDRACVAECPTDCIYEGARSLYIHPDECMECGACEVVCPVGAVHYEEA 60

Query: 60  -EPGLELWLKINSEYATQWPNITTKKESL--PSAAKMDGVKQKYEKYFSPNP 108
               L      N  + T+   +  +   L  P  A   G         +  P
Sbjct: 61  LPAALREHAPDNGRFFTE--VLPGRDAPLGSPGGAAAVGPLDADTTMIAALP 110


>gi|254818988|ref|ZP_05223989.1| putative ferredoxin FdxA [Mycobacterium intracellulare ATCC
          13950]
          Length = 106

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKIN 70
              CV+ CPVDC YEG   L IHPDEC+DCG CEP CPV+AI  +      L+  L  N
Sbjct: 1  MDRACVDECPVDCIYEGGRALYIHPDECVDCGACEPVCPVEAIYYEDDLPEDLQPHLADN 60

Query: 71 SE-YATQWPNITTKKESLPSAAK 92
          +  +A   P       S   AAK
Sbjct: 61 AAFFAETLPGRDEPLGSPGGAAK 83


>gi|332973090|gb|EGK11025.1| ferredoxin [Desmospora sp. 8437]
          Length = 77

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
          M +V+T  C   K  +CVEVCPVDC +  E    I PD CI+CG CEP CPV+AI  +  
Sbjct: 1  MAFVITSACKDEKAAECVEVCPVDCIHGDEVMYYIDPDTCIECGACEPVCPVEAIYEEDM 60

Query: 60 -EPGLELWLKINSEYAT 75
               + +++IN+ +  
Sbjct: 61 VPEEEKEYIQINANFFK 77


>gi|108804033|ref|YP_643970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
 gi|108765276|gb|ABG04158.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
          xylanophilus DSM 9941]
          Length = 79

 Score = 92.9 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+TE CI  K   CVEV PVDC  +      I+P+ECIDCG CEPEC V+AI P+ E
Sbjct: 1  MPYVITEPCIGTKDQSCVEVYPVDCICDAGEQFMINPEECIDCGACEPECTVEAIYPEDE 60

Query: 61 --PGLELWLKINSEYA 74
              ++ ++    E+ 
Sbjct: 61 VPEDMQQYITKAQEFF 76


>gi|326383750|ref|ZP_08205435.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197514|gb|EGD54703.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 506

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LELWLKINSE 72
           +C+   P +  +   + L I P+ CIDCG C   CPVDAI P        +++++IN+ 
Sbjct: 1  MNCIHPTPEERGFGTSDILHIDPEACIDCGACADACPVDAIFPADRLSARDQIFVEINAG 60

Query: 73 YATQWPNITT 82
          Y    P+I++
Sbjct: 61 YYRDHPDISS 70


>gi|332285866|ref|YP_004417777.1| ferredoxin [Pusillimonas sp. T7-7]
 gi|330429819|gb|AEC21153.1| ferredoxin [Pusillimonas sp. T7-7]
          Length = 86

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 27  YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQ--WPNITT 82
            EG NFL I+PDECIDC +C  ECP+ AI  D E       ++ +N + +    W  I+ 
Sbjct: 1   MEGPNFLVINPDECIDCSICVAECPLGAIVSDHEVADEQRHFIDLNRQLSQHPAWKRISR 60

Query: 83  KKESLPSAAKMDGVKQKY 100
            K  L        VK K 
Sbjct: 61  AKAPLSDHEHWATVKDKL 78


>gi|89056240|ref|YP_511691.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88865789|gb|ABD56666.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp.
          CCS1]
          Length = 116

 Score = 92.5 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V+   C+  K   C   CPVDC YEGE    IHP ECI+CG+CE  CPVDAI+ D E
Sbjct: 1  MALVILSACVDVKDGICTTSCPVDCIYEGERMFYIHPTECIECGMCESICPVDAIRYDDE 60

Query: 61 --PGLELWLKINSEYAT 75
               + +  +N+    
Sbjct: 61 VPAEEQPFADLNTSVFQ 77


>gi|32476854|ref|NP_869848.1| ferredoxin [Rhodopirellula baltica SH 1]
 gi|32447402|emb|CAD78991.1| ferredoxin [Rhodopirellula baltica SH 1]
          Length = 84

 Score = 91.8 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT VVT+ CI CK   C+ VCP DCF+E E  + I+PD+C+DC  C PECP +AI    D
Sbjct: 1  MTMVVTQPCIGCKDKACLTVCPADCFHEDEQMVYINPDDCVDCEACIPECPTEAIFGEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITT 82
               + ++ +N+  A   P  + 
Sbjct: 61 VPEQWKDFIALNAINADACPPASE 84


>gi|284042634|ref|YP_003392974.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283946855|gb|ADB49599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 86

 Score = 91.8 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          MTYV+ E CI  K   C EVCPVDC +  ++         L I P+ECIDC  C   CPV
Sbjct: 1  MTYVIAEPCIGEKDHSCTEVCPVDCIHPTQDEPGFAEATMLYIDPEECIDCDACVEACPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYATQ 76
          DAI P+         + + N+ Y  Q
Sbjct: 61 DAIFPEDLLPAQWAEYAERNAAYFKQ 86


>gi|312200512|ref|YP_004020573.1| ferredoxin [Frankia sp. EuI1c]
 gi|311231848|gb|ADP84703.1| ferredoxin [Frankia sp. EuI1c]
          Length = 117

 Score = 91.4 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-- 58
           M YV+   C+      CVE CP+DC Y G   L IHP+ECIDCG C   CPVDAI  D  
Sbjct: 1   MAYVIGAACVDIMDQSCVEDCPIDCIYTGARKLYIHPEECIDCGACARSCPVDAISWDRD 60

Query: 59  ---TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
               +P +       + +    P           AA +  V
Sbjct: 61  LDPADPDIAHIQDAAAFFYQPLPGQPAPLREPGGAAGLGPV 101


>gi|308371790|ref|ZP_07667247.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu004]
 gi|308335377|gb|EFP24228.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu004]
          Length = 555

 Score = 91.4 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSE 72
           +C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ 
Sbjct: 1  MNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINAS 60

Query: 73 YATQWPNI-----TTKKESLPSAAK 92
          Y  + P       T+K   +  AA+
Sbjct: 61 YYPKRPAGVKLAPTSKLAPVTPAAE 85


>gi|308231662|ref|ZP_07663905.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu001]
 gi|308370526|ref|ZP_07666957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu003]
 gi|308374124|ref|ZP_07667719.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu006]
 gi|308375281|ref|ZP_07667984.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu007]
 gi|308376537|ref|ZP_07668296.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu008]
 gi|308377537|ref|ZP_07668536.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu009]
 gi|308378749|ref|ZP_07668818.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu010]
 gi|308379895|ref|ZP_07669070.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu011]
 gi|308397494|ref|ZP_07492520.2| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu012]
 gi|308216365|gb|EFO75764.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu001]
 gi|308331656|gb|EFP20507.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu003]
 gi|308342918|gb|EFP31769.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu006]
 gi|308346746|gb|EFP35597.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu007]
 gi|308350660|gb|EFP39511.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu008]
 gi|308355320|gb|EFP44171.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu009]
 gi|308359259|gb|EFP48110.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu010]
 gi|308363169|gb|EFP52020.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu011]
 gi|308366823|gb|EFP55674.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          SUMu012]
          Length = 555

 Score = 91.4 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSE 72
           +C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ 
Sbjct: 1  MNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINAS 60

Query: 73 YATQWPNI-----TTKKESLPSAAK 92
          Y  + P       T+K   +  AA+
Sbjct: 61 YYPKRPAGVKLAPTSKLAPVTPAAE 85


>gi|331698058|ref|YP_004334297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
 gi|326952747|gb|AEA26444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudonocardia dioxanivorans CB1190]
          Length = 113

 Score = 91.0 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 37/58 (63%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTYVVT+ C+      C+E CPVDC YEG+  + I+P ECIDCG CE  CP  A   D
Sbjct: 1  MTYVVTDACVDVLDRSCLEECPVDCIYEGDRKMYINPVECIDCGACEQACPTAAAVAD 58


>gi|118463699|ref|YP_880273.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium avium 104]
 gi|118164986|gb|ABK65883.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          avium 104]
          Length = 546

 Score = 91.0 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSE 72
           +C+   P +  +     L I P  C+DCG C   CPV AI PD     +   +++IN+ 
Sbjct: 1  MNCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDNRLDDKQLPFVEINAS 60

Query: 73 YATQWPNITTKKESLPSAAKMDGV 96
          +  + P      + LP  +K+  V
Sbjct: 61 FYPKRP----AGQKLPPTSKLAPV 80


>gi|254773900|ref|ZP_05215416.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 546

 Score = 91.0 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSE 72
           +C+   P +  +     L I P  C+DCG C   CPV AI PD     +   +++IN+ 
Sbjct: 1  MNCIHPTPDEPGFATSEMLYIDPAACVDCGACVSACPVGAIAPDNRLDDKQLPFVEINAS 60

Query: 73 YATQWPNITTKKESLPSAAKMDGV 96
          +  + P      + LP  +K+  V
Sbjct: 61 FYPKRP----AGQKLPPTSKLAPV 80


>gi|260772955|ref|ZP_05881871.1| ferredoxin [Vibrio metschnikovii CIP 69.14]
 gi|260612094|gb|EEX37297.1| ferredoxin [Vibrio metschnikovii CIP 69.14]
          Length = 75

 Score = 91.0 bits (225), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C PEC   AI  + E     +L++++N+E A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVPECDAQAIFQEDELPDDQKLFIELNAELAEIWPTQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  GKWNGVPNKL 70


>gi|229541517|ref|ZP_04430577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          coagulans 36D1]
 gi|229325937|gb|EEN91612.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          coagulans 36D1]
          Length = 82

 Score = 90.6 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +V+T+ CI  K  +CV+VCPVDC  EGE+   I PD CIDCG C+  CPV+AI  
Sbjct: 5  MAFVITQPCIGEKAAECVDVCPVDCIAEGEDQYFIDPDICIDCGACQAVCPVEAIYH 61


>gi|312141555|ref|YP_004008891.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325677227|ref|ZP_08156893.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|311890894|emb|CBH50213.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325551924|gb|EGD21620.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 546

 Score = 90.6 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 18 VEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WL 67
          ++VCPV+C +   +         L I P  CIDCG C  ECPVDAI  + E       + 
Sbjct: 1  MDVCPVNCIHPTPDEPEFATTEMLYIDPQTCIDCGACVDECPVDAIFGENELSEAHSMYP 60

Query: 68 KINSEYATQWP 78
          +IN+ Y  + P
Sbjct: 61 EINAAYFEKHP 71


>gi|94969826|ref|YP_591874.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
          versatilis Ellin345]
 gi|94551876|gb|ABF41800.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
          Koribacter versatilis Ellin345]
          Length = 86

 Score = 90.6 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +  ++         L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDAEAHANEPMLYIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D     + + + N++Y 
Sbjct: 61 SAIFALDDLPEKWKEYAEKNAKYF 84


>gi|327537530|gb|EGF24249.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Rhodopirellula baltica WH47]
          Length = 84

 Score = 90.2 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          MT VVT+ CI CK   C+ VCP DCF+E E  + I+PD+C+DC  C PECP +AI    D
Sbjct: 1  MTMVVTQPCIGCKDKACLTVCPADCFHEDEQMVYINPDDCVDCEACIPECPTEAIFGEDD 60

Query: 59 TEPGLELWLKINSEYATQWPNITT 82
               + ++ +N+  A   P    
Sbjct: 61 VPEQWKDFIALNAIKADACPPACE 84


>gi|114776699|ref|ZP_01451742.1| Ferredoxin [Mariprofundus ferrooxydans PV-1]
 gi|114552785|gb|EAU55216.1| Ferredoxin [Mariprofundus ferrooxydans PV-1]
          Length = 114

 Score = 90.2 bits (223), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 60/113 (53%), Gaps = 14/113 (12%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVD 53
           M +VVT+ C  C  T CV VCPVDCFY       E  N L I P+ECIDC VCEPECP +
Sbjct: 1   MAFVVTQLCKDCVDTACVAVCPVDCFYQPKDISAETPNMLYISPEECIDCAVCEPECPWE 60

Query: 54  AIKP--DTEPGLELWLKINSEYATQWPNITT----KKESLPSAAKMDGVKQKY 100
           AI P  D     E  + +N E +    ++      K  + PSA ++   K KY
Sbjct: 61  AIYPEEDVPDVFEDDIALN-ELSDTERDLFELAEVKDHTPPSADEVAANKAKY 112


>gi|213970229|ref|ZP_03398360.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|213925110|gb|EEB58674.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
          Length = 89

 Score = 90.2 bits (223), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PD 58
          M YVV + C+ CK T CV+VCPVD F + +  L I PD CI+CGVCEPECPVDAI    +
Sbjct: 1  MPYVVGKECLSCKSTICVDVCPVDAFRDADYQLVICPDTCIECGVCEPECPVDAIINPEE 60

Query: 59 TEPGLELWLKINSEYATQWPNI 80
                  + +NSE +   P I
Sbjct: 61 YPGENHDVIVLNSELSKTSPVI 82


>gi|31044101|dbj|BAA33533.3| ferredoxin [Streptomyces griseus]
          Length = 57

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          MTYV+ + C+  K   C+E CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  
Sbjct: 1  MTYVIAQPCVDVKDKACIEECPVDCIYEGQRSLYIHPDECVDCGACEPVCPVEAIFY 57


>gi|56964420|ref|YP_176151.1| ferredoxin [Bacillus clausii KSM-K16]
 gi|56910663|dbj|BAD65190.1| ferredoxin [Bacillus clausii KSM-K16]
          Length = 79

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+   CI  K  +CV+VCPVDC  EGE+   I+PD CIDCG C+  CPVDAI  + E
Sbjct: 1  MAFVILSPCIGEKAGECVDVCPVDCIEEGEDQYFINPDICIDCGACQGVCPVDAIVEEYE 60

Query: 61 --PGLELWLKINSEYA 74
            P  + +LK   E+ 
Sbjct: 61 MAPEDQKFLKKAEEFF 76


>gi|23100035|ref|NP_693501.1| ferredoxin [Oceanobacillus iheyensis HTE831]
 gi|22778266|dbj|BAC14536.1| ferredoxin [Oceanobacillus iheyensis HTE831]
          Length = 79

 Score = 89.8 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+ + C   K  +CV VCPVDC  EG     I PD CIDCG C+  CPV AI+ + +
Sbjct: 1  MAFVILDPCRGEKAGECVSVCPVDCIEEGVKQFYIDPDICIDCGACKAVCPVSAIEEEYD 60

Query: 61 --PGLELWLKINSEYAT 75
            P  E +L+   E+  
Sbjct: 61 LTPNQEKYLEEAEEFFA 77


>gi|261252043|ref|ZP_05944617.1| ferredoxin [Vibrio orientalis CIP 102891]
 gi|260938916|gb|EEX94904.1| ferredoxin [Vibrio orientalis CIP 102891]
          Length = 75

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C  EC   AI  + E      L++++N+E A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVDECDAHAIFQEDEVPDDQTLFIELNAELAELWPVQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  EKWNGVPDKL 70


>gi|320335406|ref|YP_004172117.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
 gi|319756695|gb|ADV68452.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus maricopensis DSM 21211]
          Length = 78

 Score = 89.4 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T+ C   +   C EVCP DC ++      I P+ECIDCG C   CPV AI  + +
Sbjct: 1  MAYVITDRCAGVRDGACREVCPKDCIHDAGAQFVIDPEECIDCGACVVACPVGAIAHEDD 60

Query: 61 --PGLELWLKINSEYA 74
                ++ ++N  + 
Sbjct: 61 LVGAEGVFAQVNRAFF 76


>gi|229008434|ref|ZP_04165889.1| Ferredoxin [Bacillus mycoides Rock1-4]
 gi|228752827|gb|EEM02400.1| Ferredoxin [Bacillus mycoides Rock1-4]
          Length = 78

 Score = 89.4 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+T  CI  K  DCV+VCPV+C   G +   I+P  CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITSPCISEKAADCVDVCPVNCIELGSDQYFINPALCIDCGACETACPVEAIYYEDE 60

Query: 61 --PGLELWLKINSEYA 74
               +++ +   +Y 
Sbjct: 61 LLDEDQIFFEKAKKYF 76


>gi|169827413|ref|YP_001697571.1| ferredoxin [Lysinibacillus sphaericus C3-41]
 gi|168991901|gb|ACA39441.1| Ferredoxin 7Fe (Seven-iron ferredoxin) [Lysinibacillus sphaericus
          C3-41]
          Length = 78

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE C   K   C++VCPV+C    +    I+PD CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVNTDTQYVINPDICIDCGACELVCPVEAIFFEDE 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPAE 64


>gi|126650009|ref|ZP_01722242.1| ferredoxin [3Fe-4S](4Fe-4S) [Bacillus sp. B14905]
 gi|126593181|gb|EAZ87143.1| ferredoxin [3Fe-4S](4Fe-4S) [Bacillus sp. B14905]
          Length = 78

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE C   K   C++VCPV+C    +    I+PD CIDCG CE  CPV+AI  + E
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVNTDTQYVINPDICIDCGACELVCPVEAIFFEDE 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPAE 64


>gi|284043842|ref|YP_003394182.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283948063|gb|ADB50807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 89

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 10/86 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ ++CI  K   CVEVCPVDC +   N         L I+P+ECIDC  C  +CPV
Sbjct: 1  MAYVINQSCIGTKDASCVEVCPVDCIHPTPNEPGFDETDQLYINPEECIDCDACFEQCPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYATQ 76
          +AI PD          ++ N+ +  Q
Sbjct: 61 NAITPDDLVPEKWPDAVERNAAFFQQ 86


>gi|225872601|ref|YP_002754056.1| iron-sulfur cluster-binding protein [Acidobacterium capsulatum
          ATCC 51196]
 gi|225791610|gb|ACO31700.1| iron-sulfur cluster-binding protein [Acidobacterium capsulatum
          ATCC 51196]
          Length = 86

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +             L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDEGTYGDAEQLYIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D     + +   N+E+ 
Sbjct: 61 SAIFAIDDLPEKWQNFATKNAEHF 84


>gi|298251068|ref|ZP_06974872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297549072|gb|EFH82939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 86

 Score = 89.1 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M YV+T+  I  K   CVEVC VDC +        E    L+I+PDECI+CG  E  CPV
Sbjct: 1  MPYVITQLYIGSKDACCVEVCLVDCIHPTPDEEEFETTEHLSINPDECIECGAUEAACPV 60

Query: 53 DAIKPD--TEPGLELWLKINSEYATQ 76
           AI  +         ++ IN+ +  +
Sbjct: 61 TAIFEEPLVPQEWRQYIAINANFFKR 86


>gi|299536448|ref|ZP_07049760.1| ferredoxin 7Fe [Lysinibacillus fusiformis ZC1]
 gi|298727932|gb|EFI68495.1| ferredoxin 7Fe [Lysinibacillus fusiformis ZC1]
          Length = 78

 Score = 88.7 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M +V+TE C   K   C++VCPV+C    +    I PD CIDCG CE  CPV+AI  + +
Sbjct: 1  MAFVITELCRDEKAAVCLDVCPVNCIVMTDTQYVIDPDLCIDCGACELVCPVEAIYFEDD 60

Query: 61 PGLE 64
             E
Sbjct: 61 LPSE 64


>gi|260778119|ref|ZP_05887012.1| ferredoxin [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606132|gb|EEX32417.1| ferredoxin [Vibrio coralliilyticus ATCC BAA-450]
          Length = 75

 Score = 88.7 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I+P ECIDCG+C  EC  +AI  + E      L++++N++ A  WP  T  K ++  A
Sbjct: 1   MVINPIECIDCGLCVDECDANAIFQEDEVPADQTLYVELNAQLAELWPVQTEVKPAMDEA 60

Query: 91  AKMDGVKQKY 100
            K +GV  K 
Sbjct: 61  EKWNGVPDKL 70


>gi|23099185|ref|NP_692651.1| ferredoxin [3Fe-4S][4Fe-4S] [Oceanobacillus iheyensis HTE831]
 gi|22777413|dbj|BAC13686.1| ferredoxin [3Fe-4S][4Fe-4S] [Oceanobacillus iheyensis HTE831]
          Length = 79

 Score = 87.9 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
          M +V+T  C   K  +CVEVCPVDC  EG++   I PD CIDCG CE  CPV+AI    +
Sbjct: 1  MAFVITSPCKTEKAGECVEVCPVDCIEEGKDMFYIEPDICIDCGACEAVCPVEAIYMEDE 60

Query: 59 TEPGLELWLKINSEYAT 75
                 ++ +N  +  
Sbjct: 61 VPEEENEYISLNRLFFE 77


>gi|158318907|ref|YP_001511415.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Frankia sp. EAN1pec]
 gi|158114312|gb|ABW16509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EAN1pec]
          Length = 112

 Score = 87.1 bits (215), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKP 57
           M +V+T  CI  K   C+   CP DC YEG   + I+PDEC +CG C   CPV A  I  
Sbjct: 1   MPFVITSACIDVKDGACLGGGCPADCIYEGNRKMYINPDECTECGACAVACPVGAAMIDE 60

Query: 58  DTEPGLELWLKINS-EYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                 + ++K     ++   P           AA++  +    E
Sbjct: 61  MVPDEEQDFIKSEELFFSEVLPGRDEPLGEPGGAAEVGKINADSE 105


>gi|116620169|ref|YP_822325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Solibacter usitatus Ellin6076]
 gi|116223331|gb|ABJ82040.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 86

 Score = 87.1 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +             L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDEPAYADAELLYIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       +   N+ Y 
Sbjct: 61 SAIFALDDLPEKWSDFTAKNAAYY 84


>gi|227501607|ref|ZP_03931656.1| ferredoxin [Corynebacterium accolens ATCC 49725]
 gi|306835772|ref|ZP_07468773.1| ferredoxin [Corynebacterium accolens ATCC 49726]
 gi|227077632|gb|EEI15595.1| ferredoxin [Corynebacterium accolens ATCC 49725]
 gi|304568346|gb|EFM43910.1| ferredoxin [Corynebacterium accolens ATCC 49726]
          Length = 95

 Score = 86.4 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
              CVE CPVDC YEG+  L IHPDEC+DCG CEP CPV+AI  + +   E W+  N  
Sbjct: 1  MDRGCVEECPVDCIYEGKRMLYIHPDECVDCGACEPACPVEAIFYEDDVPDE-WIDYNDA 59

Query: 73 YATQWPNITTKKES 86
           A  + ++ +   +
Sbjct: 60 NAAFFDDLGSPGGA 73


>gi|284047254|ref|YP_003397594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
 gi|283951475|gb|ADB54219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Conexibacter woesei DSM 14684]
          Length = 87

 Score = 86.0 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K   CVEVCPVDC +   +         L I P+ECIDC  C   CPV
Sbjct: 1  MAYVIAEPCIGAKDNSCVEVCPVDCIHPTPDEPDYDRVEMLYIDPEECIDCDACVEACPV 60

Query: 53 DAIKPDT--EPGLELWLKINSEYAT 75
          DA   +         + +IN+ Y  
Sbjct: 61 DACFAEDQLPDEWSKYAEINANYYA 85


>gi|297564742|ref|YP_003683714.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Meiothermus silvanus DSM 9946]
 gi|296849191|gb|ADH62206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
          silvanus DSM 9946]
          Length = 83

 Score = 86.0 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP- 57
          M YV+ E CI  K   C  VCP +       +  L I PD CI  G+C   CPV AI P 
Sbjct: 1  MAYVIAEPCIGHKDLSCTVVCPTEAIGGRPSDPQLYIDPDLCIHYGLCASVCPVGAIFPQ 60

Query: 58 -DTEPGLELWLKINSEYATQW 77
           D       + + N +Y  +W
Sbjct: 61 EDLPEAWAAYAEGNRDYFRRW 81


>gi|299139029|ref|ZP_07032206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidobacterium sp. MP5ACTX8]
 gi|298599183|gb|EFI55344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidobacterium sp. MP5ACTX8]
          Length = 86

 Score = 85.6 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T CV+ CPVDC +  ++         L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACVDACPVDCIHPKKDETGHGEAEQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       + + N+ + 
Sbjct: 61 SAIYAGDDLPDKWVSFQEKNATHF 84


>gi|162453825|ref|YP_001616192.1| ferredoxin/ferredoxin--NADP reductase [Sorangium cellulosum 'So
          ce 56']
 gi|161164407|emb|CAN95712.1| Probable ferredoxin/ferredoxin--NADP reductase [Sorangium
          cellulosum 'So ce 56']
          Length = 107

 Score = 84.8 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 21/96 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------------EGENF-------LAIHPDECI 41
          M YV+ E C+    T CV VCPVDC +            EGE         L I P+ CI
Sbjct: 1  MAYVIAEPCVATCDTACVPVCPVDCIHGPLAADEISRIPEGERKTRLAGLQLYIDPESCI 60

Query: 42 DCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           CG CE ECPV AI  + E     + + +IN+ +  
Sbjct: 61 CCGACENECPVGAIFDEDELPAEWQRYREINARFFD 96


>gi|322436219|ref|YP_004218431.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321163946|gb|ADW69651.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 86

 Score = 84.8 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K + CV+ CPVDC +  ++         L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDSACVDACPVDCIHPKKDENGYSDATQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       +   N+ + 
Sbjct: 61 SAIYAGDDLPEKWAEYQDKNAAHF 84


>gi|297170989|gb|ADI22004.1| ferredoxin [uncultured myxobacterium HF0200_01L06]
          Length = 117

 Score = 84.4 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 13/112 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPV 52
           MT+V+T  C       CVEVCPVDC  +          N L I P+ECI+CGVCEPECP 
Sbjct: 1   MTWVITSLCRDKVDMSCVEVCPVDCIVQYTGDDTDKFPNQLYIDPEECINCGVCEPECPW 60

Query: 53  DAIKPD--TEPGLELWLKINSEYATQWPNITTKKES---LPSAAKMDGVKQK 99
           +AI  D       E    +N++           ++     PSA ++   K+K
Sbjct: 61  EAIFEDEQVPDVFEADTALNADIVEVRDQFEVPEKPDMDPPSADEVKANKEK 112


>gi|56964940|ref|YP_176671.1| ferredoxin [Bacillus clausii KSM-K16]
 gi|56911183|dbj|BAD65710.1| ferredoxin [Bacillus clausii KSM-K16]
          Length = 79

 Score = 84.4 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M++V+   CI  K  +C EVCPVDC  EG++   I+PD CIDCG C+  CPVDAI  + E
Sbjct: 1  MSFVILSPCIGEKAGECAEVCPVDCIEEGDDQYFINPDICIDCGACQGVCPVDAIVEEYE 60

Query: 61 --PGLELWLKINSEYA 74
               E +LK    + 
Sbjct: 61 MSKEDEPFLKKAEAFF 76


>gi|215445027|ref|ZP_03431779.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
          T85]
          Length = 159

 Score = 84.4 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL--WLKINSE 72
           +C+   P +  +     L I P  C+DCG C   CPV AI P+T    E   +++IN+ 
Sbjct: 1  MNCIHPTPDEPGFATSEMLYIDPVACVDCGACVTACPVSAIAPNTRLDFEQLPFVEINAS 60

Query: 73 YATQWPNI-----TTKKESLPSAAK 92
          Y  + P       T+K   +  AA+
Sbjct: 61 YYPKRPAGVKLAPTSKLAPVTPAAE 85


>gi|149925530|ref|ZP_01913794.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149825647|gb|EDM84855.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 80

 Score = 84.4 bits (208), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           I+P+ CIDCGVC PECP  AI  +       + +++IN+  A QWP I + KE L  A  
Sbjct: 2   INPEGCIDCGVCIPECPASAIFEEDNVPADQQEFIEINARLAQQWPVIDSAKEPLADADA 61

Query: 93  MDGVKQKYE 101
              V  K +
Sbjct: 62  WVDVTNKKQ 70


>gi|320161502|ref|YP_004174726.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319995355|dbj|BAJ64126.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 136

 Score = 83.7 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAI 55
          MT+V+T  C+  +   C  VCPV+C   G+      +  I PD CIDCG C PECP +AI
Sbjct: 1  MTHVITSLCL--RDGGCATVCPVECIVPGQPVDEWPWYYIDPDTCIDCGACVPECPWEAI 58

Query: 56 KPDTEPGLE 64
           P+ E   +
Sbjct: 59 FPEDEVPSQ 67


>gi|261407735|ref|YP_003243976.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Paenibacillus sp. Y412MC10]
 gi|261284198|gb|ACX66169.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. Y412MC10]
          Length = 78

 Score = 83.3 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI    D  
Sbjct: 2  YVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAIFYFEDLP 61

Query: 61 PGLELWLKINSEYAT 75
             + +     EY  
Sbjct: 62 EDQKHYFDKAVEYYK 76


>gi|73670190|ref|YP_306205.1| hypothetical protein Mbar_A2721 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397352|gb|AAZ71625.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 369

 Score = 83.3 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +VV E CI C    C+++CPV   Y       I P+ CI CG C   CPV AI  D E 
Sbjct: 189 PHVVEEKCIGC--QKCIKICPVGAPYLLGEVSMIDPNICISCGQCMEVCPVGAITIDWEH 246

Query: 62  GLELWLKINSEYA 74
            +  +L+  +EYA
Sbjct: 247 DIPNFLECLTEYA 259


>gi|282883119|ref|ZP_06291718.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281296931|gb|EFA89428.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 505

 Score = 83.3 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT NC  C    C+ VCPV+    G++   I  D+CI CG C   CP +AI     P
Sbjct: 112 SYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKDKCIRCGRCHEACPYNAIVMYDRP 171


>gi|320106410|ref|YP_004182000.1| iron-sulfur cluster-binding protein [Terriglobus saanensis
          SP1PR4]
 gi|319924931|gb|ADV82006.1| iron-sulfur cluster-binding protein [Terriglobus saanensis
          SP1PR4]
          Length = 86

 Score = 83.3 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE--GEN------FLAIHPDECIDCGVCEPECPV 52
          M YV+ E CI  K T C + CPVDC +   GE+       L I P ECIDCG C P CPV
Sbjct: 1  MAYVIAEPCIGTKDTACADACPVDCIHPKKGEDGNEEAVQLFIDPVECIDCGACVPVCPV 60

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
           AI    D       + + N+ + 
Sbjct: 61 SAIYAADDLPDKWAEFQEKNAAHF 84


>gi|288919073|ref|ZP_06413413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EUN1f]
 gi|288349513|gb|EFC83750.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Frankia sp.
           EUN1f]
          Length = 113

 Score = 82.9 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD- 58
           M +V+T  CI  K   C++  CP DC Y G   + I+PDEC +CG C   CPV A   D 
Sbjct: 1   MPFVITSACIDVKDGACLDGGCPADCIYTGGRKMYINPDECTECGACALRCPVGAAMLDE 60

Query: 59  -TEPGLELWLKINS-EYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
                 + +++     ++   P         P  A   G      ++ +
Sbjct: 61  MVPEEEQEFIRSEELFFSETLPGRDEPIGDDPGGAAKVGKIDADSEFVA 109


>gi|169628027|ref|YP_001701676.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          abscessus ATCC 19977]
 gi|169239994|emb|CAM61022.1| Putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
          abscessus]
          Length = 539

 Score = 82.9 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSE 72
           +C+   P +  +     L I    C+DCG C   CPVDAIKPD+  +     +L+INSE
Sbjct: 1  MNCIHPTPDEPDFLKAEMLHIDASACVDCGACVAACPVDAIKPDSTLKEEQLPFLRINSE 60

Query: 73 YATQ 76
          +  +
Sbjct: 61 FYPR 64


>gi|300814458|ref|ZP_07094720.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511428|gb|EFK38666.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 505

 Score = 82.1 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT NC  C    C+ VCPV+    G++   I  ++CI CG C   CP +AI     P
Sbjct: 112 SYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKEKCIRCGRCHEACPYNAIVMYDRP 171


>gi|289675307|ref|ZP_06496197.1| ferredoxin I [Pseudomonas syringae pv. syringae FF5]
          Length = 48

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 44/48 (91%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP 48
          MT+VVT+NCI CK+TDCVEVCPVDCFYEG NFL IHPDECIDC +CEP
Sbjct: 1  MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEP 48


>gi|329925765|ref|ZP_08280551.1| ferredoxin [Paenibacillus sp. HGF5]
 gi|328939645|gb|EGG35990.1| ferredoxin [Paenibacillus sp. HGF5]
          Length = 78

 Score = 81.7 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI    D  
Sbjct: 2  YVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAIYYFEDLP 61

Query: 61 PGLELWLKINSEYAT 75
             + +     EY  
Sbjct: 62 EDEKHYFDKAVEYYK 76


>gi|315647852|ref|ZP_07900953.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus vortex V453]
 gi|315276498|gb|EFU39841.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus vortex V453]
          Length = 78

 Score = 81.4 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTE 60
          YV+   CI  K  +CV+VCPVDC  EG++   I  D CI CG CE  CPV AI    D  
Sbjct: 2  YVIGSACIEEKAGECVDVCPVDCIEEGDDQFYIDTDICISCGACEAACPVAAIFYFEDLP 61

Query: 61 PGLELWLKINSEYAT 75
             + +     EY  
Sbjct: 62 EEEKHYFDKAVEYYK 76


>gi|87312333|ref|ZP_01094428.1| ferredoxin [Blastopirellula marina DSM 3645]
 gi|87284955|gb|EAQ76894.1| ferredoxin [Blastopirellula marina DSM 3645]
          Length = 71

 Score = 81.4 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNI 80
          ++CFYEG+  L IHP+ECIDC  C PECPV+AI  +       + ++++N+E A Q   I
Sbjct: 1  MECFYEGDKILYIHPEECIDCEACVPECPVEAIFHEDNVPEEWQGFIELNAEMAPQCEVI 60

Query: 81 TTKKESLPS 89
          T KKE L  
Sbjct: 61 TEKKEPLVD 69


>gi|23336655|ref|ZP_00121861.1| COG1146: Ferredoxin [Bifidobacterium longum DJO10A]
          Length = 97

 Score = 81.0 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 10 ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PGLELWLK 68
          +  K   CV+ CPVDC YEG   L I+P+EC+DCG CEP CP +AI  + + P    W K
Sbjct: 1  MDVKDKACVDECPVDCIYEGSRSLYINPNECVDCGACEPVCPTEAIFYEDDLPDEWAWYK 60

Query: 69 INS 71
            +
Sbjct: 61 DAA 63


>gi|313889048|ref|ZP_07822706.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844921|gb|EFR32324.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 501

 Score = 81.0 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y  T+NC  C    C+ VCPV+    G++   I  D+C+ CG C   CP  AI
Sbjct: 112 AYYTTDNCRKCLAHPCINVCPVNAISMGKDRTIIDKDKCVRCGRCHDACPYSAI 165


>gi|306820054|ref|ZP_07453702.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551832|gb|EFM39775.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 503

 Score = 80.6 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TY VT NC  C    C++VCPV+    G+    I  ++CI CG C+  CP +AI     P
Sbjct: 114 TYRVTNNCRKCLAHPCIQVCPVNAISMGQYSTIIDEEKCIRCGRCKDNCPYNAIVFFDRP 173


>gi|323483907|ref|ZP_08089282.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323693503|ref|ZP_08107710.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402745|gb|EGA95068.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323502460|gb|EGB18315.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
          Length = 484

 Score = 80.6 bits (198), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C   CP      G N   I PD+C +CG C   CP +AI     P
Sbjct: 94  SYTVTDNCRKCMGKACQSSCPFGAITMGNNKAFIDPDKCRECGKCATACPYNAIAHLERP 153


>gi|288869832|ref|ZP_06111989.2| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
 gi|288869437|gb|EFD01736.1| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
          Length = 491

 Score = 80.2 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C   C       G +   I PD+C +CG C   CP +AI   T P
Sbjct: 102 YVVTDNCQKCMGKACQNSCNFGAISMGHDRAYIDPDKCKECGKCSQACPYNAIADLTRP 160



 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
            Y+  + C  C                  C + CPVD     E+ +  I   +CI CG C
Sbjct: 132 AYIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDEDGIVVIDESKCIQCGAC 191

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 192 IHSCPFGAI 200


>gi|255602894|ref|XP_002537944.1| Ferredoxin 7Fe, putative [Ricinus communis]
 gi|223514472|gb|EEF24439.1| Ferredoxin 7Fe, putative [Ricinus communis]
          Length = 87

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 12/84 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+   CI      CVE+CPV+C   G N         + I+PD CIDCG C   CPV
Sbjct: 1  MAYVIAAPCIA--DYSCVEICPVNCISPGPNEEEFDDAEQMYINPDVCIDCGACRDVCPV 58

Query: 53 DAIKPD--TEPGLELWLKINSEYA 74
           AI  +       + +  IN E+ 
Sbjct: 59 LAIYEEGCLPEKWKHYAGINKEFF 82


>gi|93006115|ref|YP_580552.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
 gi|92393793|gb|ABE75068.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
          Length = 67

 Score = 79.8 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 46/60 (76%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +++ +NCI CK+TDCV VC VD F+EG NFLAI P+ CIDC +C+PEC  +AI P ++P
Sbjct: 6  AFIIGDNCIKCKYTDCVAVCLVDAFFEGLNFLAIDPNSCIDCSLCDPECSANAITPVSKP 65


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score = 79.4 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TYV+T E+CI C    C +VCPVD    E +    I  D CI CG CEP CPVDAI
Sbjct: 544 TYVITTEDCIGCG--KCAKVCPVDAISGEIKGIFEIDEDICIACGACEPVCPVDAI 597



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CP     +  +   I  ++CI CG C   CPVDAI  + +   E+   I
Sbjct: 533 CPAGACQDLLSTYVITTEDCIGCGKCAKVCPVDAISGEIKGIFEIDEDI 581


>gi|302387727|ref|YP_003823549.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
 gi|302198355|gb|ADL05926.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
          Length = 483

 Score = 79.0 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 30/59 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC LC    C   C  +    G +   I PD+C +CG C   CP +AI   T P
Sbjct: 94  YVVTDNCQLCMGKACQSSCNFNAISMGRDRAYIDPDKCKECGKCSQACPYNAIADLTRP 152



 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
            Y+  + C  C                  C + CPVD     EN +  I   +CI CG C
Sbjct: 124 AYIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDENGIVVIDESKCIQCGAC 183

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 184 IHGCPFGAI 192


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score = 78.7 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           YV+ E+C+ C    C + CP     E      I PD C  CG C   CPV AI  +   G
Sbjct: 561 YVIGEDCVQCGW--CRDTCPHGAILEKREGFYIEPDLCQRCGACLGVCPVGAIYLEAAGG 618

Query: 63  LELWLK 68
            + W K
Sbjct: 619 EKPWSK 624


>gi|150389480|ref|YP_001319529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149949342|gb|ABR47870.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 370

 Score = 78.3 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+   CI C    CVE CPVD  +  +    I P+ CI CG C   CP  AI+   +   
Sbjct: 191 VMENLCIGC--QMCVENCPVDAIHMEDKKAVIDPEVCIGCGECITVCPKRAIEVQWKTDA 248

Query: 64  ELWLKINSEYA 74
            ++++  +EYA
Sbjct: 249 NIFVEKMAEYA 259


>gi|291165831|gb|EFE27878.1| Fe-hydrogenase large subunit family protein [Filifactor alocis ATCC
           35896]
          Length = 498

 Score = 78.3 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT  C  C    C++VCPV     GE    I  ++CI CG C+  CP +AI     P  E
Sbjct: 116 VTSTCRQCMAHPCIQVCPVGAITMGETQTHIDKEKCIKCGKCKEACPYNAIIQYDRPCAE 175


>gi|21228665|ref|NP_634587.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20907167|gb|AAM32259.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 369

 Score = 77.9 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +VV E CI C   +CVE+CPV       +   I+P  CI CG C   CP +AI  + E 
Sbjct: 189 PHVVEEKCIGCG--NCVEICPVGAASLEGDVSRINPGVCISCGQCMEVCPENAIDLNWEQ 246

Query: 62  GLELWLKINSEYA 74
            +  +L+  +EYA
Sbjct: 247 DIPEFLECMTEYA 259


>gi|148553514|ref|YP_001261096.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
 gi|148498704|gb|ABQ66958.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
          Length = 801

 Score = 77.9 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP    + G++      D CI CG C+  CP   I+ + EP  +
Sbjct: 662 VPTSCRHCEHPHCMADCPPTAIHRGQDGEVYIDDTCIGCGNCQRNCPYGVIRMEKEPPQK 721

Query: 65  L 65
            
Sbjct: 722 P 722


>gi|294146722|ref|YP_003559388.1| iron-sulfur protein [Sphingobium japonicum UT26S]
 gi|292677139|dbj|BAI98656.1| iron-sulfur protein [Sphingobium japonicum UT26S]
          Length = 837

 Score = 77.1 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 23/109 (21%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT----E 60
           V  +C  C+H  C+  CP +  + G +      + CI CG C+  CP   I+ D+    +
Sbjct: 698 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFIDETCIGCGNCQRNCPYGVIRMDSVPPKK 757

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPG 109
           PGL  W+ + +                P      G   K  +Y +  PG
Sbjct: 758 PGLLSWMFLGA-------------GPGP------GEPSKKWRYKNAEPG 787



 Score = 33.6 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPEC 50
            +   E  + L I    C+ C  CE  C
Sbjct: 648 DNGIGEATDVLLIDEHLCVGCDNCEKAC 675


>gi|307265233|ref|ZP_07546791.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919677|gb|EFN49893.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 513

 Score = 76.7 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C+EVCP       +    I  D+CI+CG C+  CP +AI     P
Sbjct: 100 YRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNAISDTLRP 158


>gi|302562520|ref|ZP_07314862.1| ferredoxin-NADP reductase [Streptomyces griseoflavus Tu4000]
 gi|302480138|gb|EFL43231.1| ferredoxin-NADP reductase [Streptomyces griseoflavus Tu4000]
          Length = 519

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 12/85 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M + +T+ C  C    CV VCPV+C +             L I P  CIDCG C   CP 
Sbjct: 1  MAFAITQTC--CNDATCVSVCPVNCIHPTPEERAFGSTEMLHIDPRSCIDCGACADACPA 58

Query: 53 DAIKPDTE--PGLELWLKINSEYAT 75
          DAI P      G  ++ +IN+ Y  
Sbjct: 59 DAILPVDRLSEGQRVYERINAAYFE 83


>gi|160894561|ref|ZP_02075337.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
 gi|156863872|gb|EDO57303.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
          Length = 483

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C   C       G +   I P +C +CG C   CP +AI     P
Sbjct: 94  YVVTDNCQKCMGKACQAACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAIADLVRP 152


>gi|229828064|ref|ZP_04454133.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
 gi|229792658|gb|EEP28772.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
          Length = 490

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TY VT+NC  C    C+  C      EG+  + I P +C +CG C   CP +AI   T P
Sbjct: 95  TYTVTDNCRFCLGKACINSCKFGAISEGDLRMHIDPAKCKECGQCAKNCPYEAIVHLTRP 154


>gi|297544478|ref|YP_003676780.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842253|gb|ADH60769.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 506

 Score = 76.7 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C+EVCP       +    I  D+CI+CG C+  CP +AI     P
Sbjct: 100 YRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNAISDTLRP 158


>gi|310828126|ref|YP_003960483.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
 gi|308739860|gb|ADO37520.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
          Length = 506

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++VT+NC  C    CV VCPV+  Y  +    I  ++C+ CG C   CP +AI     P
Sbjct: 113 AFMVTDNCRGCLAHPCVSVCPVNAVYMKDGKSHIDKEKCVRCGRCREACPYEAIVKYDRP 172


>gi|240171952|ref|ZP_04750611.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium kansasii
          ATCC 12478]
          Length = 527

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPS 89
           L I P  C+DCG C   CPV AI PD+  E     +++IN+ Y  + P        LP 
Sbjct: 1  MLYIDPVACVDCGACVSACPVGAIAPDSRLESRQLPFVEINASYYPKRP----ADAKLPP 56

Query: 90 AAKMDGV 96
           +K+  V
Sbjct: 57 TSKLAPV 63


>gi|20092258|ref|NP_618333.1| hypothetical protein MA3446 [Methanosarcina acetivorans C2A]
 gi|19917495|gb|AAM06813.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 360

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +VV   CI C    CVE+CPV       +   I P  CI CG C   CP  AI  + E 
Sbjct: 180 PHVVEAKCIGCG--RCVEICPVGAASLEGDVSRIDPGICISCGQCMEVCPEGAIDINWEE 237

Query: 62  GLELWLKINSEYA 74
            +  +L+  +EYA
Sbjct: 238 DIPEFLECLTEYA 250


>gi|28212003|ref|NP_782947.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
 gi|28204446|gb|AAO36884.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
          Length = 494

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVTE C  C    C+EVCP            I+ + C +CG+CE  CP +AI     P
Sbjct: 104 YVVTEACRGCLQHKCMEVCPAGSINRAAGKAYINHETCKECGLCESACPYNAIAEVMRP 162


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 76.3 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 36/56 (64%), Gaps = 6/56 (10%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           YV+  E+CI C  T CV+VCPVD   EGE      I  DECI+CG C  ECPVDAI
Sbjct: 545 YVIDEEDCIGC--TSCVDVCPVDAI-EGEKKEAHVIDTDECINCGSCVDECPVDAI 597



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CP     E      I  ++CI C  C   CPVDAI+ + +   
Sbjct: 531 ETCPAGNCQELVAGYVIDEEDCIGCTSCVDVCPVDAIEGEKKEAH 575



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEG 29
            +V+ T+ CI C    CV+ CPVD   + 
Sbjct: 574 AHVIDTDECINCG--SCVDECPVDAISQA 600


>gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
 gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
          Length = 531

 Score = 76.0 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + +T+ C+ C  T C + CPVDC    +  L  I P +CI CG CE  CPV+AI
Sbjct: 477 FFITDKCVGC--TKCAKACPVDCITGVQKELHVIDPSKCIKCGSCEAACPVNAI 528


>gi|87198326|ref|YP_495583.1| cyclic nucleotide-binding domain-containing protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134007|gb|ABD24749.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 858

 Score = 76.0 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +      D CI CG C+  CP   I+ D  P  +
Sbjct: 712 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFINDTCIGCGNCQRNCPYGVIRMDKVPPKK 771

Query: 65  L 65
            
Sbjct: 772 P 772


>gi|295094467|emb|CBK83558.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           sp. ART55/1]
          Length = 484

 Score = 76.0 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C + C       G +   I P +C +CG C   CP +AI     P
Sbjct: 94  YVVTDNCQKCMGRACQQACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAIADLMRP 152



 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 15  TDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAI 55
             C++ CPV      EN      I  D+CIDCG C  +CP  AI
Sbjct: 151 RPCIKSCPVGAISVAENGTGIAVIDKDKCIDCGSCIHKCPFGAI 194


>gi|163814709|ref|ZP_02206098.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
 gi|158450344|gb|EDP27339.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
          Length = 484

 Score = 76.0 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+NC  C    C + C       G +   I P +C +CG C   CP +AI     P
Sbjct: 94  YVVTDNCQKCMGRACQQACRFGAISMGRDKSYIDPSKCKECGQCAKACPYNAIADLMRP 152



 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 15  TDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAI 55
             C++ CPV      EN      I  D+CIDCG C  +CP  AI
Sbjct: 151 RPCIKSCPVGAISVAENGTGIAVIDKDKCIDCGSCIHKCPFGAI 194


>gi|20807413|ref|NP_622584.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
 gi|20515935|gb|AAM24188.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
          Length = 74

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + +TE CI C    C   CPVD  YEG+    I P++CIDCG CE  CP  AIK +
Sbjct: 20 AHYITEECISCG--ACAAECPVDAIYEGDGKYEIDPEKCIDCGACEAVCPTGAIKAE 74



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          + EG N      +ECI CG C  ECPVDAI    
Sbjct: 13 YKEGRNVAHYITEECISCGACAAECPVDAIYEGD 46


>gi|149176958|ref|ZP_01855567.1| ferredoxin [Planctomyces maris DSM 8797]
 gi|148844213|gb|EDL58567.1| ferredoxin [Planctomyces maris DSM 8797]
          Length = 61

 Score = 75.6 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPS 89
           + I+PDECIDC  C PECPV+AI  +       + + +IN++ + + P IT KKE L  
Sbjct: 1  MVYINPDECIDCEACVPECPVEAIFHEDNVPEKWQEYTQINADKSQELPVITEKKEPLAD 60


>gi|225405722|ref|ZP_03760911.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
 gi|225042746|gb|EEG52992.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
          Length = 484

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVVT+NC  C    C   C       G +   I P +C  CG C   CP +AI     P
Sbjct: 93  AYVVTDNCQKCMGKACQNSCNFGAISMGRDRAYIDPAKCKSCGKCSQACPYNAIAHLERP 152


>gi|313898382|ref|ZP_07831919.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956764|gb|EFR38395.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 504

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T VVT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 113 TVVVTDTCQGCLAHPCKEVCPKDAISMVNGKSYIDQEKCIKCGRCMDVCPYGAINKLERP 172



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C++VCP     + E                     I  D+C+ CG
Sbjct: 144 SYIDQEKCIKCG--RCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCG 201

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 202 MCLVNCPFGAI 212


>gi|309775984|ref|ZP_07670976.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916266|gb|EFP62014.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 504

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T VVT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 113 TVVVTDTCQGCLAHPCKEVCPKDAISMVNGKSYIDQEKCIKCGRCMDVCPYGAINKLERP 172



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C++VCP     + E                     I  D+C+ CG
Sbjct: 144 SYIDQEKCIKCG--RCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCG 201

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 202 MCLVNCPFGAI 212


>gi|304317899|ref|YP_003853044.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779401|gb|ADL69960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V +NC  C    C++ CP D     +    I PD+CI CG C   C  DAIKP     ++
Sbjct: 191 VGKNCTAC--QTCIKNCPEDAITLVDGKAYIDPDKCIGCGECITMCQYDAIKPQWGTDMD 248

Query: 65  LWLKINSEYA 74
            +++  +EYA
Sbjct: 249 EFVERMTEYA 258


>gi|307297192|ref|ZP_07577004.1| cyclic nucleotide-binding protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877363|gb|EFN08595.1| cyclic nucleotide-binding protein [Sphingobium chlorophenolicum
           L-1]
          Length = 841

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +      + CI CG C+  CP   I+ D+ P  +
Sbjct: 702 VPTSCRHCEHPHCMADCPPNAIHRGPDGEVFIDETCIGCGNCQRNCPYGVIRMDSVPPKK 761

Query: 65  L 65
            
Sbjct: 762 P 762



 Score = 34.0 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 11/28 (39%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPEC 50
            +   E  + L I    C+ C  CE  C
Sbjct: 652 DNGIGEATDVLLIDEHLCVGCDNCEKAC 679


>gi|254490549|ref|ZP_05103735.1| hypothetical protein MDMS009_881 [Methylophaga thiooxidans
          DMS010]
 gi|224464293|gb|EEF80556.1| hypothetical protein MDMS009_881 [Methylophaga thiooxydans
          DMS010]
          Length = 63

 Score = 75.2 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 45 VCEPECPVDAIKPDTEPGLEL--WLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
          +CEPECP +AI  + +   E   +L+IN E +  WP I+ KK+ LP A + DG   K
Sbjct: 1  MCEPECPAEAIFSEDDLPDEQMEFLQINEELSQVWPVISEKKDPLPDAEEWDGKSDK 57


>gi|167630654|ref|YP_001681153.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
 gi|167593394|gb|ABZ85142.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
          Length = 484

 Score = 74.8 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+E CPV    +      I+ ++CI+CG C   CP  AI     P
Sbjct: 93  FTVTEACRGCIAHPCMEACPVGAISQINRRAIINQEKCIECGRCRQACPYGAITDTQRP 151



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 15/66 (22%)

Query: 7   ENCILCK--------------HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C++ CPV      E+ LA I   +CI+CG C   CP
Sbjct: 128 EKCIECGRCRQACPYGAITDTQRPCIKACPVKAISYSEDKLATIDQKKCINCGQCAYRCP 187

Query: 52  VDAIKP 57
             AI  
Sbjct: 188 FGAISD 193


>gi|154498692|ref|ZP_02037070.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
          29799]
 gi|150272431|gb|EDM99625.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
          29799]
          Length = 73

 Score = 74.4 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +C+ C    C   CPV    +G+    I  D CIDCG C   CPV AI
Sbjct: 18 MAYVIGNDCVSCG--SCEGACPVSAISQGDEHYVIDADTCIDCGTCAETCPVGAI 70



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  ++C+ CG CE  CPV AI    E 
Sbjct: 18 MAYVIGNDCVSCGSCEGACPVSAISQGDEH 47


>gi|309389842|gb|ADO77722.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 471

 Score = 74.4 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+VT+ C  C    CV  CPVD     +N   I   +CI+CG C   C  +AI  +  P
Sbjct: 111 YIVTDACRNCVAHKCVNACPVDAIVIIQNKAYIDQHKCIECGKCAKTCSYNAILENQRP 169


>gi|253996419|ref|YP_003048483.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
 gi|253983098|gb|ACT47956.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
          Length = 824

 Score = 74.4 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---DTEP 61
           V  +C  C+H  C++ CP D  +   +      D CI CG C+  CP D I+      +P
Sbjct: 688 VPTSCRHCEHPHCMKDCPPDAIHRAPHGEVYIDDSCIGCGNCQQNCPYDVIQMAVIQDQP 747

Query: 62  GLELW 66
              LW
Sbjct: 748 EQSLW 752


>gi|309390025|gb|ADO77905.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 501

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + VT NC  C    C  VCPVD     E    I  ++CI+CG C+  CP +AI
Sbjct: 115 AHFVTNNCRKCLAHPCSIVCPVDAITIEEKAAVIDQEKCINCGKCKKACPYEAI 168


>gi|167770016|ref|ZP_02442069.1| hypothetical protein ANACOL_01358 [Anaerotruncus colihominis DSM
          17241]
 gi|167667850|gb|EDS11980.1| hypothetical protein ANACOL_01358 [Anaerotruncus colihominis DSM
          17241]
          Length = 70

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ + C+ C    C + CPV    EG+    I P  CI+CG C  +CP +AIKP+
Sbjct: 15 MAYVIGDACVSCG--ACKDTCPVGAISEGDGKYEIDPSACIECGACAADCPSEAIKPE 70


>gi|239628141|ref|ZP_04671172.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518287|gb|EEQ58153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 483

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y+VT+NC  C    C   C       G     I P +C +CG C   CP +AI     P
Sbjct: 93  SYIVTDNCRKCMGKACQNSCNFGAISMGRERAYIDPAKCKECGKCSQACPYNAIAHLERP 152


>gi|315925580|ref|ZP_07921790.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621121|gb|EFV01092.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 493

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT+NC  C    C+  C     + GE    I  ++C +CG+C   CP +AI     P
Sbjct: 92  SYVVTDNCQNCLGKACLSACRFGAIHPGEKRSRIDANKCRECGMCATACPYNAIAHLVRP 151


>gi|225175870|ref|ZP_03729863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168794|gb|EEG77595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 57

 Score = 74.4 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MT+V+ E CI C    C   CPVD   EG++   I P+ CIDCG C   CPVDAI  ++
Sbjct: 1  MTHVINEECISCG--SCEPECPVDAITEGDDKYVIDPETCIDCGACAEVCPVDAIHEES 57



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  +ECI CG CEPECPVDAI    +
Sbjct: 1  MTHVINEECISCGSCEPECPVDAITEGDD 29


>gi|187932652|ref|YP_001884615.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
 gi|187720805|gb|ACD22026.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
          Length = 494

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 27/57 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C  VC        E    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 106 VTDACRNCIAHKCQSVCNFGAITYVEGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162


>gi|293401032|ref|ZP_06645177.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306058|gb|EFE47302.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 504

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 25/58 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT+ C  C    C EVCP D          I  D+CI CG C   CP  AI     P
Sbjct: 115 VVTDTCQGCLAHPCKEVCPKDAISIINGKSVIDQDKCIKCGRCMDVCPYGAINKLERP 172



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPE 49
           + CI C    C++VCP     + E                     I  ++C+ CG+C   
Sbjct: 149 DKCIKCG--RCMDVCPYGAINKLERPCARSCGMDAIKSDEFGRAEIDHEKCVSCGMCLVN 206

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 207 CPFGAI 212


>gi|291519873|emb|CBK75094.1| Iron only hydrogenase large subunit, C-terminal domain
           [Butyrivibrio fibrisolvens 16/4]
          Length = 492

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C+  C       GE  + I P +C +CG+C  ECP  AI     P
Sbjct: 95  SYSVTDNCRFCLGKACLNSCKFGAITPGERRMHIDPTKCKECGMCAKECPYQAIVHLERP 154


>gi|169333814|ref|ZP_02861007.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259379|gb|EDS73345.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
          Length = 505

 Score = 74.0 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 29/60 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T  VT NC  C    C EVCPVD  Y       I+ D+C+ CG C   CP +AI     P
Sbjct: 110 TVFVTNNCRGCYAHPCSEVCPVDAVYFENGKSVINKDKCVRCGRCVEACPYNAIVKFDRP 169


>gi|291535976|emb|CBL09088.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis M50/1]
          Length = 482

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAHLKRP 151


>gi|238917328|ref|YP_002930845.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238872688|gb|ACR72398.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 489

 Score = 74.0 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+VT+NC  C    C + C         +   I PD+C +CG+C   CP +AI     P
Sbjct: 97  YIVTDNCRKCMMKACQQACKFGAVSMTRDRAYIDPDKCKECGMCAKACPYNAIADLIRP 155



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 15/74 (20%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  + C  C                  C ++CP +     EN +  I  ++CI CG C
Sbjct: 127 AYIDPDKCKECGMCAKACPYNAIADLIRPCKKICPANAITMDENGICEIDENKCIQCGQC 186

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   T+
Sbjct: 187 IHACPFGAIGSKTD 200


>gi|29347824|ref|NP_811327.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339726|gb|AAO77521.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
          Length = 76

 Score = 73.6 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV+   EG +  +I+PD C DCG C   CP +AI P
Sbjct: 21 MAYVISDDCIACG--TCIDECPVEAISEG-DIYSINPDVCTDCGTCADVCPSEAIHP 74


>gi|251780311|ref|ZP_04823231.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084626|gb|EES50516.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 494

 Score = 73.6 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C  VC        +    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 106 VTDACRNCIAHKCQSVCNFGAITYVDGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162



 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-----------------ENFLAIHPDECIDCG 44
            Y+  + C  C    C + CP D   E                  +    I  ++C++CG
Sbjct: 134 AYIDPDKCKECG--MCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCG 191

Query: 45  VCEPECPVDAIKP 57
            C   CP  A++ 
Sbjct: 192 ACMAACPFGALED 204


>gi|188587767|ref|YP_001919801.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498048|gb|ACD51184.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 494

 Score = 73.6 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C  VC        +    I PD+C +CG+C+  CP DAI  D  P
Sbjct: 106 VTDACRNCIAHKCQSVCNFGAITYVDGKAYIDPDKCKECGMCKKACPYDAIAEDMRP 162



 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG-----------------ENFLAIHPDECIDCG 44
            Y+  + C  C    C + CP D   E                  +    I  ++C++CG
Sbjct: 134 AYIDPDKCKECG--MCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCG 191

Query: 45  VCEPECPVDAIKP 57
            C   CP  A++ 
Sbjct: 192 ACMAACPFGALED 204


>gi|160933096|ref|ZP_02080485.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
 gi|156868170|gb|EDO61542.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
          Length = 546

 Score = 73.6 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT NC  C    CV  CP        +   I P +C +CG C   CP +AI     P
Sbjct: 160 FTVTANCQRCMAKKCVAACPFGAITVTGSGAYIDPAKCKECGRCAAACPYNAISDTMRP 218


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++  E CI C  + C +VCPVD    E +N   I PD CI CG CEPECPVDAI
Sbjct: 546 YIIDEEACIGC--SKCSKVCPVDAISGEIKNPFKIDPDVCIACGACEPECPVDAI 598



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 21  CPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP   C     ++  I  + CI C  C   CPVDAI  + +   +
Sbjct: 533 CPAGVCDELTSDYYIIDEEACIGCSKCSKVCPVDAISGEIKNPFK 577


>gi|153812810|ref|ZP_01965478.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
 gi|149831170|gb|EDM86259.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
          Length = 501

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+V+  C  C    C++ CP       +    I  D+CI CG C+  CP DAI  +  P
Sbjct: 115 YIVSNMCRGCVAHPCMQACPKGAISMKDGKSYIDQDKCIKCGKCKAACPYDAISHNIRP 173


>gi|291538469|emb|CBL11580.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis XB6B4]
          Length = 482

 Score = 73.6 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAHLKRP 151


>gi|149920538|ref|ZP_01909005.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
 gi|149818582|gb|EDM78028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
          Length = 573

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           T+ VT  C  C +  CV +CPV   Y+ ++ +     D CI C  C   CP DAI  D +
Sbjct: 51  TFQVT-RCNHCANPPCVRICPVTAMYQRDDGIVEFDKDACIGCKACMQACPYDAIHIDPD 109

Query: 61  PG 62
            G
Sbjct: 110 TG 111


>gi|302670217|ref|YP_003830177.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
 gi|302394690|gb|ADL33595.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
          Length = 490

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y VT+NC  C    C+  C       G+  + I P +C +CG C   CP  AI     P
Sbjct: 95  AYSVTDNCRFCMGKACLNSCAFGAISPGDTHMHIDPAKCKECGKCAAACPYSAIVHLERP 154


>gi|167037823|ref|YP_001665401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040723|ref|YP_001663708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter sp. X514]
 gi|256752156|ref|ZP_05493022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914762|ref|ZP_07132078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X561]
 gi|307724004|ref|YP_003903755.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|320116240|ref|YP_004186399.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854963|gb|ABY93372.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X514]
 gi|166856657|gb|ABY95065.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748970|gb|EEU62008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889697|gb|EFK84843.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter sp. X561]
 gi|307581065|gb|ADN54464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter sp. X513]
 gi|319929331|gb|ADV80016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 56

 Score = 73.6 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  AIK +
Sbjct: 1  MAHYITDECISCG--ACTAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAIKAE 56



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          DECI CG C  ECPVDAI    
Sbjct: 7  DECISCGACTAECPVDAIHEGD 28


>gi|188585464|ref|YP_001917009.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350151|gb|ACB84421.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 482

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YV+TE C  C    CV  CPV      ++   I   +CI+CG C+  CP +AI     P
Sbjct: 89  YVITEACRGCLANHCVSYCPVGAIEFVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRP 147


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C  VCPV       +    I  D+CI CG C   CPV+AI
Sbjct: 543 YFITDKCIGC--TKCARVCPVTAISGKVKEKHVIDTDKCIKCGACMDACPVNAI 594


>gi|307266903|ref|ZP_07548422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326389885|ref|ZP_08211449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
 gi|306918060|gb|EFN48315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325994153|gb|EGD52581.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
          Length = 56

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  AIK +
Sbjct: 1  MAHYITDECISCG--ACAAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAIKAE 56



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          DECI CG C  ECPVDAI    
Sbjct: 7  DECISCGACAAECPVDAIHEGD 28


>gi|317497525|ref|ZP_07955844.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895208|gb|EFV17371.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 495

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V E C  C    C+EVCP       + +  I  ++CI CG C+  CP  AI     P
Sbjct: 112 AFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCPYGAIYERKRP 171



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+  E CI C    C +VCP    YE +   A                 I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKCGQ--CKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCMVNCPFGAI 211


>gi|304317218|ref|YP_003852363.1| ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778720|gb|ADL69279.1| Ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 504

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP       +    I  D+CI+CG C+  CP +AI  +  P
Sbjct: 100 YRVTEACRGCITHRCTEVCPKGAISIIDRKSHIDYDKCIECGRCKEACPYNAISDNLRP 158


>gi|149176045|ref|ZP_01854662.1| ferredoxin [Planctomyces maris DSM 8797]
 gi|148845199|gb|EDL59545.1| ferredoxin [Planctomyces maris DSM 8797]
          Length = 59

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESL 87
           L I P+ECIDC  C  ECPV+AI  +         +++IN+E A + P IT +K  L
Sbjct: 1  MLYIDPEECIDCDACRTECPVNAIFYEDDVPDQWREYIQINAEMAAKTPPITERKAPL 58


>gi|167766696|ref|ZP_02438749.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|167711633|gb|EDS22212.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|291558362|emb|CBL37162.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 495

 Score = 73.3 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V E C  C    C+EVCP       + +  I  ++CI CG C+  CP  AI     P
Sbjct: 112 AFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCPYGAIYERKRP 171



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+  E CI C    C +VCP    YE +   A                 I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKCGQ--CKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCMVNCPFGAI 211


>gi|167758102|ref|ZP_02430229.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
 gi|167663999|gb|EDS08129.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
          Length = 503

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 28/62 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y V+  C  C    C+EVCP D          I  D+CI CG C+  CP DAI     P 
Sbjct: 117 YEVSNMCKGCLAHPCIEVCPKDAISMVGGKSYIDQDKCIKCGKCKSVCPYDAISKKERPC 176

Query: 63  LE 64
            +
Sbjct: 177 QK 178



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF---------------YEGENF--LAIHPDECIDCG 44
           +Y+  + CI C    C  VCP D                  E +N     I+ D+C+ CG
Sbjct: 147 SYIDQDKCIKCG--KCKSVCPYDAISKKERPCQKACGVGAIESDNMGRAHINNDKCVSCG 204

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 205 MCMVSCPFGAISD 217


>gi|167629699|ref|YP_001680198.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592439|gb|ABZ84187.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 493

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + VT  C  C    C+E CPVD   +      I+  +CI+CG C   CP  AI
Sbjct: 110 FTVTGACRGCITHRCIEACPVDAIAQINRLAYINQQKCIECGRCHQVCPYGAI 162



 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 15/72 (20%)

Query: 1   MTYVVTENCILCK--------------HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGV 45
           + Y+  + CI C                  C++ CPV     GE+ +A I P++C+ CG 
Sbjct: 139 LAYINQQKCIECGRCHQVCPYGAITDMQRPCIKACPVKAIQYGEDKIARIDPNKCVSCGH 198

Query: 46  CEPECPVDAIKP 57
           C   CP  AI  
Sbjct: 199 CAVSCPFGAISD 210


>gi|295110160|emb|CBL24113.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus obeum A2-162]
          Length = 501

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y+V+  C  C    C++ CP       +    I  D+CI CG C+  CP DAI  +  P
Sbjct: 115 YIVSNMCRGCVAHPCMQACPKGAISMKDGKSYIDQDKCIKCGKCKASCPYDAISHNVRP 173


>gi|218780897|ref|YP_002432215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762281|gb|ACL04747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 3   YVV---TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YVV    E CI C    CVE CP+D F EGE+ +++ P  CI CG+C   CP +A+  + 
Sbjct: 272 YVVQFNEEECINCG--TCVERCPMDAFTEGEDVISVDPGRCIGCGLCTTTCPTEALSLEI 329

Query: 60  EPGLE 64
           +P  +
Sbjct: 330 QPEEK 334


>gi|85710648|ref|ZP_01041712.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
 gi|85687826|gb|EAQ27831.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
          Length = 808

 Score = 72.9 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +C  C+H  C+  CP +    G +    I+ + CI CG C+  CP   I+ D  P  
Sbjct: 669 VPTSCRHCEHPHCMADCPPNAIQRGPDGEVSINAETCIGCGNCKSNCPYGVIRMDPVPPK 728

Query: 64  EL 65
           + 
Sbjct: 729 KP 730



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDA 54
             E  + L I    CI C  CE  C  DA
Sbjct: 622 IGEATDALLIDEKLCIGCDNCERAC-ADA 649


>gi|240145814|ref|ZP_04744415.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
 gi|257202092|gb|EEV00377.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
          Length = 348

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    CV  C       G +   I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACVNACKFGAIEPGRDRSHIDPSKCKECGRCAQACPYNAIAHLKRP 151


>gi|304439876|ref|ZP_07399770.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371615|gb|EFM25227.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 501

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C  VCPV+    G++   I  D+C+ CG C+  CP  AI     P
Sbjct: 115 VTDNCRRCMAHPCTNVCPVNAVKIGKHRAEIDHDKCVKCGRCKDTCPYHAIVDFDRP 171


>gi|118467237|ref|YP_884190.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
 gi|118168524|gb|ABK69421.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
          Length = 511

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWP 78
           L I P  C+DCG C   CPVDAI+ + E       +  IN+ Y    P
Sbjct: 11 MLYIDPQACVDCGACVEVCPVDAIRHEDELTDEQARFKDINAAYFAAQP 59


>gi|257784216|ref|YP_003179433.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
 gi|257472723|gb|ACV50842.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
          Length = 531

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C E+CP +     +    I  ++CI CG+C   CP  AI     P
Sbjct: 123 YRVTNACQGCLAHPCREICPKEAISFVDKKAYIDQEKCIQCGMCFKVCPYQAIHHHVRP 181


>gi|317497055|ref|ZP_07955382.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895600|gb|EFV17755.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 481

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT NC  C   DC++ C       G     I P +C +CG+C   CP +AI   + P
Sbjct: 92  SYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRP 151



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C + CPVD     E  +  I  ++CI CG C  +CP  AI
Sbjct: 150 RPCKDSCPVDAISYDEYGVSVIDEEKCIRCGQCAAKCPFGAI 191


>gi|167767746|ref|ZP_02439799.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|167710485|gb|EDS21064.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|291558899|emb|CBL37699.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 481

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +YVVT NC  C   DC++ C       G     I P +C +CG+C   CP +AI   + P
Sbjct: 92  SYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRP 151



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C + CPVD     E  +  I  ++CI CG C  +CP  AI
Sbjct: 150 RPCKDSCPVDAISYDEYGVSVIDEEKCIRCGQCAAKCPFGAI 191


>gi|149927499|ref|ZP_01915753.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
 gi|149823772|gb|EDM82998.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
          Length = 820

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   C++ CP D     E    +  D CI CG C   CP +AI+   +P    
Sbjct: 693 SCRHCEQPHCMKDCPPDAIRRNEKGEVMIADTCIGCGNCAKNCPYNAIELRVKPPPRK 750


>gi|219847452|ref|YP_002461885.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219541711|gb|ACL23449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 559

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRTDGIVEFDPKVCIGCKACMQACPYDAIYIDPE 110



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 23/61 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPVDA 54
           CI CK   C++ CP D          I P+     +C  C           CE  CP  A
Sbjct: 90  CIGCK--ACMQACPYDAI-------YIDPETHNAAKCHFCAHRIDQGLKPACEIVCPEQA 140

Query: 55  I 55
           I
Sbjct: 141 I 141


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           YV+T++C  C  T CV+ CPVD  + GE      I+ D CI CG C  +CP  AI
Sbjct: 542 YVITDDCKGC--TLCVKACPVDAIH-GERKAVHLINTDTCIKCGACVDKCPFKAI 593



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +  D+C  C +C   CPVDAI  + + 
Sbjct: 542 YVITDDCKGCTLCVKACPVDAIHGERKA 569


>gi|299143936|ref|ZP_07037016.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518421|gb|EFI42160.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 498

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 29/60 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           TY VT+NC  C    C  VCPV+      N   I   +CI CG C+  CP +AI     P
Sbjct: 112 TYYVTDNCRKCMAHPCTNVCPVNAVTIERNRAHIDTTKCIKCGRCKETCPYNAIVMYDRP 171



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 15/74 (20%)

Query: 2   TYVVTENCILCK--------------HTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVC 46
            ++ T  CI C                  C   C V+     E     I  DEC+ CG C
Sbjct: 143 AHIDTTKCIKCGRCKETCPYNAIVMYDRPCAAACGVNAIGSDEYGRAEIDHDECVACGRC 202

Query: 47  EPECPVDAIKPDTE 60
              CP  AI   T+
Sbjct: 203 IASCPFGAIADKTQ 216


>gi|126178175|ref|YP_001046140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125860969|gb|ABN56158.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 367

 Score = 72.5 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  E C  C    C  VCP       +    ++P+ C+ CG C   CP  AI+ D   
Sbjct: 187 PYVEIERCGGCG--KCTTVCPQAAMTLADGRAVLNPEHCVGCGDCMRACPEGAIEFDWTT 244

Query: 62  GLELWLKINSEYA 74
            +  +++   EYA
Sbjct: 245 EIRPFIERLCEYA 257


>gi|160940737|ref|ZP_02088079.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436257|gb|EDP14024.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
          Length = 505

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y+VT+NC  C    C   C       G     I P +C +CG C   CP +AI     P
Sbjct: 115 SYIVTDNCRKCMGKACQNSCNFGAISMGRERAYIEPGKCKECGKCSQACPYNAIAHLERP 174



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C ++CPVD     E  +  I   +CI CG C   CP  AI
Sbjct: 173 RPCKKICPVDAITYDEYGICVIDEKKCIQCGACIHSCPFGAI 214


>gi|297538314|ref|YP_003674083.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
 gi|297257661|gb|ADI29506.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
          Length = 833

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP---DTEP 61
           V  +C  C+H  C++ CP D  +   +      D CI CG C+  CP D I+      +P
Sbjct: 693 VPTSCRHCEHPHCMKDCPPDAIHRAPHGEVYIDDSCIGCGNCQQNCPYDVIQMAVIQDQP 752

Query: 62  GLELW 66
              +W
Sbjct: 753 ERSIW 757



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 28  EGENFLAIHPDECIDCGVCEPEC 50
           E  + L I    C+ C  CE  C
Sbjct: 648 EATDVLLIDESLCVRCNYCEDAC 670


>gi|156742145|ref|YP_001432274.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233473|gb|ABU58256.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 565

 Score = 72.1 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRADGIVEFDPKACIGCKACLQACPYDAIYIDPE 110


>gi|309776276|ref|ZP_07671265.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915956|gb|EFP61707.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 482

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C+  C  D  + GE+   I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGEDHAFIDYDKCKECGACKNACPFNAIVETQRP 156



 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 15  TDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
             C++ CPVD    GE+ LA I   +CI+CG C+ +CP  AI+ 
Sbjct: 155 RPCMKSCPVDAIRMGEDGLAKIDEAKCINCGACQAKCPFGAIED 198


>gi|225016098|ref|ZP_03705331.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
 gi|224951095|gb|EEG32304.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
          Length = 490

 Score = 72.1 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+NC  C    C++ CP       +    I   +C +CG C   CP +AI     P
Sbjct: 102 TVTQNCRGCLAKKCIKACPFGAISTSDGHAVIDKKKCRECGKCVAACPYNAIVDIERP 159


>gi|313897910|ref|ZP_07831451.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312957445|gb|EFR39072.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 482

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C+  C  D  + GE+   I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGEDHAFIDYDKCKECGACKNACPFNAIVETQRP 156



 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 15  TDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
             C++ CPVD    GE+ LA I   +CI+CG C+ +CP  AI+ 
Sbjct: 155 RPCMKSCPVDAIRMGEDGLAKIDEAKCINCGACQVKCPFGAIED 198


>gi|148655927|ref|YP_001276132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus sp. RS-1]
 gi|148568037|gb|ABQ90182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus
           sp. RS-1]
          Length = 565

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E
Sbjct: 52  YFQVTRCNHCANPPCVRICPVTAMYQRSDGIVEFDPRVCIGCKACLQACPYDAIYIDPE 110


>gi|118444967|ref|YP_878935.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
 gi|118135423|gb|ABK62467.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
          Length = 494

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +TE C  C    C+EVCPV    +      I+ D C +CG+C+  CP +AI     P
Sbjct: 103 YTITEACRGCVQHKCMEVCPVKAITKINGRAYINQDVCRECGMCKQVCPYNAISEVMRP 161



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 16/72 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVD--CFYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C +VCP +  C    +    I+ +ECI CG 
Sbjct: 133 AYINQDVCRECGMCKQVCPYNAISEVMRPCKKVCPTEAICISPQDRRAEINDEECISCGA 192

Query: 46  CEPECPVDAIKP 57
           C   CP  AI  
Sbjct: 193 CMKACPFGAISD 204


>gi|220932451|ref|YP_002509359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
 gi|219993761|gb|ACL70364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothermothrix orenii H 168]
          Length = 57

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ CI+C    C   CPVD   +G+N   I PD CIDCG C   CPV+AI  +
Sbjct: 1  MAHVISDECIMCG--ACEPECPVDAISQGDNKYEIDPDTCIDCGACAEVCPVEAISEE 56


>gi|289675306|ref|ZP_06496196.1| ferredoxin [Pseudomonas syringae pv. syringae FF5]
          Length = 58

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 51  PVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           P  AI  + E   G+E ++++N+E A  WPNIT KK+++P AA+ DG   K  + 
Sbjct: 2   PAVAIYSEDEIPAGMENFIELNAELAEVWPNITEKKDAMPDAAEWDGKTGKIAEL 56


>gi|171463322|ref|YP_001797435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192860|gb|ACB43821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 252

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  ++   
Sbjct: 86  VSVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSFACPFGAPQFLSKGAF 145


>gi|167748877|ref|ZP_02421004.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|317470283|ref|ZP_07929677.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167651847|gb|EDR95976.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|316902256|gb|EFV24176.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 495

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V   C  C    C+EVCP +     + +  I  ++CI CG C+  CP  AI     P
Sbjct: 112 AFIVGGECQGCMAHPCMEVCPKNAISFVDGYSYIDQEKCIKCGQCQKVCPYSAIHERKRP 171



 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C +VCP    +E +                     I+PD+C+ CG
Sbjct: 143 SYIDQEKCIKCGQ--CQKVCPYSAIHERKRPCEVACGVGAIETDYAGRATINPDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCMVNCPFGAI 211


>gi|92118594|ref|YP_578323.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801488|gb|ABE63863.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 198

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C  VCPV+CFY  E+ + +H  D CI CG C   CP  A         
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTEDGVVLHSKDLCIGCGYCFYACPFGAP-------- 102

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             + K+++  +    +  T     P A   DG K++YEKY
Sbjct: 103 -QYPKVSNFGSRGKMDKCTFCAGGPEA---DGSKEEYEKY 138


>gi|319779236|ref|YP_004130149.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
 gi|317109260|gb|ADU92006.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
          Length = 201

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y++ E+CI C  T C++VCPVD       ++  + PD C  C +C   CPVD I+    
Sbjct: 82  AYILEEHCIGC--TKCIQVCPVDSIIGANKWMHTVIPDFCTGCELCVLACPVDCIQ--MN 137

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
           P L LW + ++  A    +   K+       + D +    E  FS
Sbjct: 138 PSLALWTEDDAAIARTRFHARNKRLEDDKILEQDRLNSLSENQFS 182


>gi|302336154|ref|YP_003801361.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
 gi|301319994|gb|ADK68481.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
          Length = 539

 Score = 71.7 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C E+CP       +    I  D C+ CG+CE  CP  AI     P
Sbjct: 127 YTVTDQCQGCLAHPCREICPKQAISFVDKRAHIDQDLCVQCGMCERTCPYHAIHHHVRP 185


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +T++C  C  T CV+ CP D    E +    I  DECI CG C   CP DAI  +
Sbjct: 544 YKITDDCEGC--TKCVDECPADAISGEAKEQHTIDVDECIKCGACVDVCPFDAIVKE 598



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGL 63
           D+C  C  C  ECP DAI  + +   
Sbjct: 548 DDCEGCTKCVDECPADAISGEAKEQH 573


>gi|154483117|ref|ZP_02025565.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
 gi|149735925|gb|EDM51811.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
          Length = 504

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +T  C  C    C+EVCP D     +    I  D+CI CG C   CP +A+     P
Sbjct: 114 FITNACQGCLEHPCIEVCPKDAIKMVKGRSVIDQDKCIKCGKCASACPYNAVVKQERP 171


>gi|94311692|ref|YP_584902.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355544|gb|ABF09633.1| formate dehydrogenase iron-sulfur subunit [Cupriavidus
           metallidurans CH34]
          Length = 226

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  +E   
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSEGTF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++           T     P A   +G + ++EKY
Sbjct: 112 GVRGKMDK---------CTFCNGGPEA---NGSEAEFEKY 139


>gi|289578084|ref|YP_003476711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|297544357|ref|YP_003676659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527797|gb|ADD02149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|296842132|gb|ADH60648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 56

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPVD  +EG+    I PD CIDCG CE  CP  A+K +
Sbjct: 1  MAHYITDECISCG--ACAAECPVDAIHEGDGKYEIDPDTCIDCGACEAVCPTGAVKAE 56



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/22 (63%), Positives = 14/22 (63%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          DECI CG C  ECPVDAI    
Sbjct: 7  DECISCGACAAECPVDAIHEGD 28


>gi|218135337|ref|ZP_03464141.1| hypothetical protein BACPEC_03242 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990722|gb|EEC56733.1| hypothetical protein BACPEC_03242 [Bacteroides pectinophilus ATCC
          43243]
          Length = 56

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M ++++++C+ C    CV  CPV+   EG+  + I  D CIDCG CE  CPV A + +
Sbjct: 1  MAHIISDDCVSCG--ACVAECPVNAISEGDGKMVIDADTCIDCGACEGVCPVGAPQAE 56


>gi|288574064|ref|ZP_06392421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569805|gb|EFC91362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 354

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    C   CPV           I  D CI CG C   CP  AI  D    +
Sbjct: 189 VDDEKCVGCG--RCFRNCPVKAISMTGGKAVIDKDVCIGCGECLTVCPASAISLDWRTDV 246

Query: 64  ELWLKINSEYA 74
             + +  +EYA
Sbjct: 247 VQFHRRMAEYA 257



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
           +++  ++C+ CG C   CPV AI
Sbjct: 187 MSVDDEKCVGCGRCFRNCPVKAI 209


>gi|293401574|ref|ZP_06645717.1| hypothetical protein
 gi|291305212|gb|EFE46458.1| [Fe] hydrogenase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 482

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    C+  C  D  + G +   I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACLSACKFDAIHMGNDHAFIDYDKCKECGACKNACPFNAIVETQRP 156



 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP 57
             C++ CPVD    GE+ L  I  ++CI+CG C+ +CP  AI+ 
Sbjct: 155 RPCMKSCPVDAISMGESGLAEIDEEKCINCGACQAKCPFGAIED 198


>gi|116624720|ref|YP_826876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Solibacter usitatus Ellin6076]
 gi|116227882|gb|ABJ86591.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
          Solibacter usitatus Ellin6076]
          Length = 83

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 12/84 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPV 52
          M YV+T+ C   K   CV+ CPVDC +  ++         L + PD+CIDCG C P CP 
Sbjct: 1  MAYVITDTCT--KDELCVQACPVDCIHPKQDEAGFAEAPQLYVKPDDCIDCGACVPVCPT 58

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
          ++I    +       +  IN+ + 
Sbjct: 59 NSIFVLDELPEEYAKFADINAAHY 82


>gi|239628874|ref|ZP_04671905.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridiales bacterium 1_7_47_FAA]
 gi|239519020|gb|EEQ58886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridiales bacterium 1_7_47FAA]
          Length = 55

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ ++C+ C    C   CPV    EG+    I  D CIDCG C   CP  AI+
Sbjct: 1  MAYVINDSCVSCG--SCAGECPVGAISEGDGKYVIDADTCIDCGTCAATCPTGAIE 54


>gi|163848741|ref|YP_001636785.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222526688|ref|YP_002571159.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163670030|gb|ABY36396.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450567|gb|ACM54833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           sp. Y-400-fl]
          Length = 559

 Score = 71.3 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           + VT  C  C +  CV +CPV   Y+  + +    P  CI C  C   CP DAI  D E
Sbjct: 53  FQVT-RCNHCANPPCVRICPVTAMYQRTDGIVEFDPKVCIGCKACLQACPYDAIYIDPE 110


>gi|302878833|ref|YP_003847397.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
 gi|302581622|gb|ADL55633.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
          Length = 796

 Score = 71.3 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C++ CP D  +   N      D CI CG C+  CP   I+   +   +
Sbjct: 672 VPTSCRHCEHPHCMKDCPPDAIHRSINGEVFISDNCIGCGNCQTNCPYGVIQMAVKQDYQ 731

Query: 65  L 65
            
Sbjct: 732 K 732



 Score = 40.9 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 34/97 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------FLAIHP--------------- 37
            +++NCI C   +C   CP                     L I P               
Sbjct: 702 FISDNCIGCG--NCQTNCPYGVIQMAVKQDYQKRSIWQVMLGISPSQAKPAASDALPKVA 759

Query: 38  ---DEC---IDCGVCEPECPVDAIKPDTEPGLELWLK 68
              D C   I   VC   CP  A    +      ++K
Sbjct: 760 VKCDMCKDIIGGPVCVRACPTGAAFRVSPENFMEYVK 796


>gi|296184817|ref|ZP_06853228.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|296050599|gb|EFG90022.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 495

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C+EVCP +          I+ + C +CG+C   CP  AI     P
Sbjct: 104 YTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIAEVMRP 162


>gi|255502232|gb|ACU11597.1| HfsD [Thermoanaerobacterium saccharolyticum]
          Length = 495

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP            I  D+CI+CG C+  CP +AI  +  P
Sbjct: 91  YRVTEACRGCITHRCTEVCPKGAITIINKKANIDYDKCIECGRCKDACPYNAISDNLRP 149


>gi|253680886|ref|ZP_04861689.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
 gi|253562735|gb|EES92181.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
          Length = 494

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +TE C  C    C+EVCP     +      I+ D C +CG+C+  CP +AI     P
Sbjct: 103 YTITEACRGCVQHKCMEVCPAKAINKINGRAYINQDACRECGMCKQVCPYNAISEVMRP 161



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 16/72 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVD--CFYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C   CP    C    +    I  +ECI CG 
Sbjct: 133 AYINQDACRECGMCKQVCPYNAISEVMRPCKTACPTGAICISPEDRRAIIKDEECISCGA 192

Query: 46  CEPECPVDAIKP 57
           C   CP  AI  
Sbjct: 193 CMKACPFGAISD 204


>gi|323704227|ref|ZP_08115806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536293|gb|EGB26065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 56

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPVD  +EG     +  D CIDCG CEP CP  AIK +
Sbjct: 1  MAHIITDECISCG--ACAAECPVDAIHEGTGKYEVDADTCIDCGACEPVCPTGAIKAE 56


>gi|299135397|ref|ZP_07028587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589805|gb|EFI50010.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 198

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A         
Sbjct: 51  ISMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAP-------- 102

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             + K+ +  +    +  T     P A   DG K++YEKY
Sbjct: 103 -QYPKLGNFGSRGKMDKCTFCAGGPEA---DGSKEEYEKY 138


>gi|160915963|ref|ZP_02078171.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
 gi|158432439|gb|EDP10728.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
          Length = 482

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+NC  C    CV  C  D  + G     I  D+C +CG C+  CP +AI     P
Sbjct: 100 VTDNCRKCMAKACVASCKFDAIHIGNERAYIDYDKCKECGACKNACPFNAIVETPRP 156



 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  + C  C                  C   CPVD    GEN L  I  ++CI+CG C
Sbjct: 128 AYIDYDKCKECGACKNACPFNAIVETPRPCKLSCPVDAITIGENKLAYIDEEKCINCGAC 187

Query: 47  EPECPVDAIKP 57
           + +CP  AI+ 
Sbjct: 188 QAKCPFGAIED 198


>gi|332286205|ref|YP_004418116.1| ferrodoxin, 4Fe-4S [Pusillimonas sp. T7-7]
 gi|330430158|gb|AEC21492.1| ferrodoxin, 4Fe-4S [Pusillimonas sp. T7-7]
          Length = 74

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSA 90
           + I P  C++C  C   CPV AI PD E       +  +N + +  +P  +     LP A
Sbjct: 1   MVIDPAVCVNCTTCVIVCPVGAIVPDYELQADQHSFKALNRDLSKVYPRASGPVPPLPDA 60

Query: 91  AKMDGVKQKYEKYF 104
            +      K  K  
Sbjct: 61  DEHAFETNKRSKLL 74


>gi|85859636|ref|YP_461838.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722727|gb|ABC77670.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 59

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M YV+T++C+ C    C +VCP     EGE+   I P  C DCG C  +CP +AI P  E
Sbjct: 1  MAYVITDDCVACG--SCQDVCPAGAISEGEDKYVIDPAVCTDCGTCAEQCPAEAIVPGEE 58


>gi|323704847|ref|ZP_08116424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535773|gb|EGB25547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 71.0 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C  C    C++ CP D     +    I P++CI CG C   C  DAI P     ++
Sbjct: 191 VGKKCTAC--QTCIKNCPEDAISLVDGKAYIDPEKCIGCGECITMCQYDAINPQWGTDMD 248

Query: 65  LWLKINSEYA 74
            +++  +EYA
Sbjct: 249 EFVERMTEYA 258


>gi|225374841|ref|ZP_03752062.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
 gi|225213302|gb|EEG95656.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
          Length = 468

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEPGRLRSHIDPQKCKECGKCAQACPYNAIAHLKRP 151



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C   CPV+     E  +  I   +CI CG C   CP  AI
Sbjct: 150 RPCKFSCPVNAITYDEYGISVIDEKKCIRCGKCIHSCPFGAI 191


>gi|160937728|ref|ZP_02085088.1| hypothetical protein CLOBOL_02621 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439373|gb|EDP17125.1| hypothetical protein CLOBOL_02621 [Clostridium bolteae ATCC
          BAA-613]
          Length = 56

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ C+ C    C   CPV    EG++   I  D CIDCG C   CP  AI
Sbjct: 1  MAYVISDACVSCG--SCAAECPVSAISEGDSQYVIDADTCIDCGTCAATCPTGAI 53


>gi|291527156|emb|CBK92742.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 485

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEAGRLRSHIDPQKCKECGRCAQACPYNAIAHLKRP 151



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C   CPV+     E  +  I   +CI CG C   CP  AI
Sbjct: 150 RPCKFSCPVNAITYNEYGISVIDESKCIRCGKCIHSCPFGAI 191


>gi|238924739|ref|YP_002938255.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|238876414|gb|ACR76121.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|291526109|emb|CBK91696.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 485

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I P +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEAGRLRSHIDPQKCKECGRCAQACPYNAIAHLKRP 151



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C   CPV+     E  +  I   +CI CG C   CP  AI
Sbjct: 150 RPCKFSCPVNAITYNEYGISVIDESKCIRCGKCIHSCPFGAI 191


>gi|225386321|ref|ZP_03756085.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
          DSM 15981]
 gi|225047600|gb|EEG57846.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
          DSM 15981]
          Length = 56

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++C+ C    C   CPV    EG++   I  D CIDCG C   CP  AI
Sbjct: 1  MAYVINDSCVSCG--SCAAECPVGAISEGDSQYVIDADTCIDCGTCAGTCPTGAI 53


>gi|304439744|ref|ZP_07399642.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304371731|gb|EFM25339.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 79

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPV+C  EG     I  D+CIDCG C   CP  A +P+
Sbjct: 24 MAHIITDACIACG--ACQPECPVNCISEGA-IYEIDQDQCIDCGACSSVCPTGAAQPE 78



 Score = 40.1 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          FY G     I  D CI CG C+PECPV+ I
Sbjct: 18 FYGGAIMAHIITDACIACGACQPECPVNCI 47


>gi|237736591|ref|ZP_04567072.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 642

 Score = 71.0 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C  +G+      I  D C  CG C   CPV AI    
Sbjct: 217 FRITEKCIGC--TACARVCPVKCI-DGKLKEKHTIDTDRCTHCGQCVAACPVGAIFEGD 272



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL 33
           T+ C  C    CV  CPV   +EG++ L
Sbjct: 250 TDRCTHCGQ--CVAACPVGAIFEGDHTL 275


>gi|296452544|ref|ZP_06894241.1| ferredoxin [Clostridium difficile NAP08]
 gi|296881044|ref|ZP_06904987.1| ferredoxin [Clostridium difficile NAP07]
 gi|296258649|gb|EFH05547.1| ferredoxin [Clostridium difficile NAP08]
 gi|296427910|gb|EFH13814.1| ferredoxin [Clostridium difficile NAP07]
          Length = 70

 Score = 70.6 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 15 MAYKITDACISCG--ACEAECPVSCISAGDDAYVIDASSCIDCGSCAGACPVDAPQPE 70



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                 D CI CG CE ECPV  I    + 
Sbjct: 14 KMAYKITDACISCGACEAECPVSCISAGDDA 44


>gi|323706136|ref|ZP_08117705.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534580|gb|EGB24362.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 504

 Score = 70.6 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C EVCP            I  D+CI+CG C+  CP +AI  +  P
Sbjct: 100 YRVTEACRGCITHRCTEVCPKGAITIINKKANIDYDKCIECGRCKDACPYNAISDNLRP 158


>gi|150015217|ref|YP_001307471.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
 gi|149901682|gb|ABR32515.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
          Length = 496

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C   C        +    I PD+C +CG+C+  CP DA+  D  P
Sbjct: 104 FQVTDACRNCIAHKCQSACNFGAITYVDGRAYIDPDKCKECGMCKKACPYDAVAEDMRP 162


>gi|255525714|ref|ZP_05392646.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|255510616|gb|EET86924.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C+EVCP +          I+ + C +CG+C   CP  AI     P
Sbjct: 67  YTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIAEVMRP 125


>gi|218133263|ref|ZP_03462067.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992136|gb|EEC58140.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
          Length = 483

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+NC LC    C + C       G +   I P +C +CG C   CP +AI     P
Sbjct: 95  YTVTDNCRLCMMKACKQACKFGAVSMGRDRAYIDPQKCRECGQCAKACPYNAIADLIRP 153



 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
            Y+  + C  C                  C++ CPV      E  ++ I   +CI+CG C
Sbjct: 125 AYIDPQKCRECGQCAKACPYNAIADLIRPCMKTCPVGAIEMDEYGVSKIDESKCIECGKC 184

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 185 IHSCPFGAI 193


>gi|188585512|ref|YP_001917057.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350199|gb|ACB84469.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 507

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+E CP D          I+ ++CI+CG C+  CP +AI     P
Sbjct: 110 FTVTEACRGCVAHYCMESCPKDAISFINRQAYINQEKCIECGKCKNMCPFNAISDVMRP 168



 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            Y+  E CI C    C  +CP +   +                 G+  ++I  D+C+ CG
Sbjct: 140 AYINQEKCIECG--KCKNMCPFNAISDVMRPCRSACTVDAVKVDGDRRISIDQDKCVSCG 197

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 198 ACIEACPFGAI 208


>gi|158634532|gb|ABW76118.1| Fe-hydrogenase 3 [Trimastix pyriformis]
          Length = 445

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPYHAI 168



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 15/61 (24%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    +G      I  ++CI CG C+  CP
Sbjct: 151 DLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQLHCP 210

Query: 52  V 52
            
Sbjct: 211 F 211


>gi|73540389|ref|YP_294909.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117802|gb|AAZ60065.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 237

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  +    
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSTGTF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        + +G + ++EKY
Sbjct: 112 GVRGKMD------------KCTFCAGGPEKNGSEAEFEKY 139


>gi|331084747|ref|ZP_08333835.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410841|gb|EGG90263.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 504

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I   +CI CG C+  CP DAI     P
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNGHSYIDQSKCIKCGKCKSACPYDAIAKKERP 176



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+    CI C    C   CP D   + E   A                 I  ++C+ CG
Sbjct: 148 SYIDQSKCIKCG--KCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCG 205

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 206 MCMVSCPFGAISD 218


>gi|325661658|ref|ZP_08150282.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472185|gb|EGC75399.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 504

 Score = 70.6 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP D          I   +CI CG C+  CP DAI     P
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNGHSYIDQSKCIKCGKCKSACPYDAIAKKERP 176



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +Y+    CI C    C   CP D   + E   A                 I  ++C+ CG
Sbjct: 148 SYIDQSKCIKCG--KCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCG 205

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 206 MCMVSCPFGAISD 218


>gi|110802368|ref|YP_699704.1| ferredoxin (fdxA) [Clostridium perfringens SM101]
 gi|110682869|gb|ABG86239.1| putative ferredoxin [Clostridium perfringens SM101]
          Length = 69

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A   +
Sbjct: 14 MAYKILDTCVSCG--ACAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 69


>gi|258514612|ref|YP_003190834.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778317|gb|ACV62211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C    C EVCP       E    I  D+CI CG C   CPV A   D +  L
Sbjct: 190 VDEDKCIGCGG--CSEVCPEQAITMSEMKANIDLDKCIGCGECLTVCPVKANGIDWQTDL 247

Query: 64  ELWLKINSEY 73
           E +L+  +EY
Sbjct: 248 EAFLERMAEY 257



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
            + +  D+CI CG C   CP  AI
Sbjct: 187 KIVVDEDKCIGCGGCSEVCPEQAI 210


>gi|302669638|ref|YP_003829598.1| ferredoxin [Butyrivibrio proteoclasticus B316]
 gi|302394111|gb|ADL33016.1| ferredoxin [Butyrivibrio proteoclasticus B316]
          Length = 56

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ CI C    C   CPV    +G+    I  + CIDCG C  +CPV AI
Sbjct: 1  MAYVISDGCISCG--SCAAQCPVSAISQGDTQYVIDANTCIDCGSCAAQCPVSAI 53


>gi|124266363|ref|YP_001020367.1| formate dehydrogenase iron-sulfur subunit [Methylibium
           petroleiphilum PM1]
 gi|124259138|gb|ABM94132.1| formate dehydrogenase iron-sulfur subunit [Methylibium
           petroleiphilum PM1]
          Length = 210

 Score = 70.6 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  T    
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSYACPFGAPQFPTNGTF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            L  K++           T     P A   +G + ++EKY
Sbjct: 111 GLRGKMDK---------CTFCAGGPEA---NGSEAEFEKY 138


>gi|193213841|ref|YP_001995040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193087318|gb|ACF12593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 547

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C  C +  CV +CPV   Y+ E+ +     + CI C  C   CP +AI  D + 
Sbjct: 51  YFQVTRCNHCANPPCVRICPVTAMYQREDGIVEFDKNVCIGCKACTQACPYNAIHVDPDS 110

Query: 62  G 62
           G
Sbjct: 111 G 111



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 7/18 (38%)

Query: 33 LAIHPDECIDCGVCEPEC 50
            I   +CI C  C   C
Sbjct: 5  FVIDNRKCIGCHACSTAC 22


>gi|331270381|ref|YP_004396873.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
 gi|329126931|gb|AEB76876.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
          Length = 494

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +TE C  C    C+EVCP     +      I+ D C +CG+C+  CP +AI     P
Sbjct: 103 YTITEACRGCVQHKCMEVCPAKAITKINGRAYINQDVCRECGMCKQVCPYNAISEVMRP 161



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 16/72 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVD--CFYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C   CP    C    +    I  +ECI CG 
Sbjct: 133 AYINQDVCRECGMCKQVCPYNAISEVMRPCKTACPTGAICISPEDRRAVIKDEECISCGA 192

Query: 46  CEPECPVDAIKP 57
           C   CP  AI  
Sbjct: 193 CMKACPFGAISD 204


>gi|241663767|ref|YP_002982127.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|240865794|gb|ACS63455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 222

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++   
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        + +G ++++EKY
Sbjct: 112 GVRGKMD------------KCTFCAGGPEKNGSEEEFEKY 139


>gi|187929657|ref|YP_001900144.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|309781575|ref|ZP_07676310.1| formate dehydrogenase [Ralstonia sp. 5_7_47FAA]
 gi|187726547|gb|ACD27712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
 gi|308919680|gb|EFP65342.1| formate dehydrogenase [Ralstonia sp. 5_7_47FAA]
          Length = 222

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++   
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        + +G ++++EKY
Sbjct: 112 GVRGKMD------------KCTFCAGGPEKNGSEEEFEKY 139


>gi|227873643|ref|ZP_03991880.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Oribacterium sinus F0268]
 gi|227840514|gb|EEJ50907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Oribacterium sinus F0268]
          Length = 56

 Score = 70.2 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +VV++ C+ C    C  VCPV+   EG     + PD CIDCG CE  CP  AI  +
Sbjct: 1  MAHVVSDECVSCG--ACAAVCPVEAISEGPTKYVVDPDTCIDCGACEEPCPTGAIAAE 56


>gi|313903955|ref|ZP_07837335.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
 gi|313471104|gb|EFR66426.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
          Length = 513

 Score = 70.2 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C   C  D    G +   I P +C +CG C   CP +AI     P
Sbjct: 95  SYSVTDNCRKCMGQACKNACKFDAISIGNHRSHIDPTKCRECGKCAQACPYNAIVHLERP 154


>gi|152981586|ref|YP_001353659.1| formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase
           beta subunit) [Janthinobacterium sp. Marseille]
 gi|151281663|gb|ABR90073.1| formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase
           beta subunit) [Janthinobacterium sp. Marseille]
          Length = 209

 Score = 70.2 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E  + +H  D CI CG C   CP  A +  +    
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEEGVVLHDKDICIGCGYCSYACPFGAPQFPSNGTF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            L  K++            K        + +G K ++EKY
Sbjct: 112 GLRGKMD------------KCTFCAGGPEENGSKAEFEKY 139


>gi|331083579|ref|ZP_08332690.1| ferredoxin [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403790|gb|EGG83342.1| ferredoxin [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 56

 Score = 70.2 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CPV+   EG++   I  D C+DCG C   CP +AI
Sbjct: 1  MAYVITDECVSCG--TCAGECPVEAISEGDDKYVIDADTCVDCGTCAGVCPTEAI 53



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  DEC+ CG C  ECPV+AI    +
Sbjct: 1  MAYVITDECVSCGTCAGECPVEAISEGDD 29


>gi|167761785|ref|ZP_02433912.1| hypothetical protein BACSTE_00125 [Bacteroides stercoris ATCC
          43183]
 gi|167700291|gb|EDS16870.1| hypothetical protein BACSTE_00125 [Bacteroides stercoris ATCC
          43183]
          Length = 70

 Score = 70.2 bits (171), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +  +I P+ C +CG C   CP +AI P
Sbjct: 15 MAYVISDDCIACG--TCIDECPVGAISEG-DIYSIDPETCTECGTCADVCPSEAIHP 68


>gi|18977101|ref|NP_578458.1| mulitcopper oxidase domain-containing protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892744|gb|AAL80853.1| multi domain protein containing corrinoid/iron-sulfur region
           [Pyrococcus furiosus DSM 3638]
          Length = 388

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCF-YEGENFLAIHP--DECIDCGVCEPECPVDAIKPDTEPG 62
            E C  C    CV+VCP  C+  +GEN   + P  D+C+ CG C  +CP +A++ +   G
Sbjct: 303 GERCTGCGV--CVDVCPRACYEVDGENHTVMMPRADKCVQCGACIVQCPFEALRFEAPDG 360


>gi|295697039|ref|YP_003590277.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
 gi|295412641|gb|ADG07133.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
          Length = 519

 Score = 70.2 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + +T  C  C+   CV +CPV   ++  + +     + CI C  C   CP DAI 
Sbjct: 65  FQIT-RCNQCEDPPCVAICPVSAMFQRPDGIVDFDREVCIGCKACMAACPYDAIY 118



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 29/77 (37%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPV 52
           E CI CK   C+  CP D          IHPD     +C  C           C   CPV
Sbjct: 100 EVCIGCK--ACMAACPYDAI-------YIHPDIHSAEKCNFCAHRIDQGLEPACVAVCPV 150

Query: 53  DAIK------PDTEPGL 63
           +AI       P++E   
Sbjct: 151 EAIVVGDLNDPESEVSQ 167


>gi|329913103|ref|ZP_08275888.1| Formate dehydrogenase-O, iron-sulfur subunit [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545421|gb|EGF30633.1| Formate dehydrogenase-O, iron-sulfur subunit [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 208

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  +     L 
Sbjct: 55  ACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCAYACPFGAPQFPSNGVFGLR 114

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            K++            K        + DG K+++EKY
Sbjct: 115 GKMD------------KCTFCAGGPEEDGSKEEFEKY 139


>gi|291561240|emb|CBL40039.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 490

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +VVT+NC  C    C   C       G +   I P  C +CG C   CP +AI     P
Sbjct: 94  FVVTDNCQKCMGKACQNACNFGAISIGRDRAHIDPSVCKECGRCAQSCPYNAIAELIRP 152



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 15  TDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
             C   CPVD            I   +CI CG C   CP  AI
Sbjct: 151 RPCRRACPVDAITMDPETGICQIDEKKCIQCGACVRSCPFGAI 193


>gi|210615774|ref|ZP_03290755.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
 gi|210150110|gb|EEA81119.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
          Length = 502

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V++ C  C    C EVCPV      +    I  ++CI CG C+  CP DAI     P
Sbjct: 116 YEVSDMCKGCVAHPCREVCPVGAISMKKGRSYIDQEKCIKCGKCKSVCPYDAISKKERP 174



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  D+C+ CG
Sbjct: 146 SYIDQEKCIKCG--KCKSVCPYDAISKKERPCAKACGVNAIGSDKMGRAHIDNDKCVSCG 203

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 204 MCMVSCPFGAISD 216


>gi|134094637|ref|YP_001099712.1| formate dehydrogenase iron-sulfur subunit FdnH [Herminiimonas
           arsenicoxydans]
 gi|133738540|emb|CAL61585.1| formate dehydrogenase iron-sulfur subunit [Herminiimonas
           arsenicoxydans]
          Length = 209

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A +  +    
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSYACPFGAPQFPSNGAF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            L  K++            K        + +G K ++EKY
Sbjct: 112 GLRGKMD------------KCTFCAGGPEENGSKAEFEKY 139


>gi|266619566|ref|ZP_06112501.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288868851|gb|EFD01150.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 56

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CPV    EGE    I  D CI CG C   CPV AI  +
Sbjct: 1  MAYVISDACVSCG--TCEGECPVSAISEGEGQYVIDADTCISCGTCAGACPVGAISEE 56


>gi|167770334|ref|ZP_02442387.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
 gi|167667656|gb|EDS11786.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
          Length = 513

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C EVCP D          I  ++CI CG C   CP  AI     P
Sbjct: 124 YRVTDCCQGCLAHPCKEVCPRDAVSIVHGKSVIDQEKCIKCGRCAEVCPYGAILKLERP 182



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 19/68 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPE 49
           E CI C    C EVCP     + E                     I  D+C+ CG+C   
Sbjct: 159 EKCIKCG--RCAEVCPYGAILKLERPCASACGMDAISSDEHGRAVIDYDKCVSCGMCIVN 216

Query: 50  CPVDAIKP 57
           CP  AI  
Sbjct: 217 CPFGAISD 224


>gi|220931057|ref|YP_002507965.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
 gi|219992367|gb|ACL68970.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
          Length = 491

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT  C  C    CV  CP        N   +  ++C++CG+C   CP  AI     P
Sbjct: 115 VVTNACRNCVAHHCVNSCPRGAITIVNNQAYVIREKCVECGLCVKACPYGAILEVERP 172



 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
            YV+ E C+ C    CV+ CP     E E                     I  + CI+CG
Sbjct: 144 AYVIREKCVECGL--CVKACPYGAILEVERPCTSACSLDAVVPGEKSTAEIDDNNCIECG 201

Query: 45  VCEPECPVDAIKPDTE 60
            C   CP  AI   +E
Sbjct: 202 SCIEACPFGAISYKSE 217


>gi|188587472|ref|YP_001919017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352159|gb|ACB86429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 56

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +TE CI C    C   CP +   EGE    I  D CIDCG C   CPVDAI  +
Sbjct: 1  MAYKITEECIKCG--ACEPECPTEAISEGEEMYVIDADNCIDCGACADVCPVDAIIQE 56



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                +ECI CG CEPECP +AI    E
Sbjct: 1  MAYKITEECIKCGACEPECPTEAISEGEE 29


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ +NCI C  T CV+VCPVD    E +    I PD+CI CG C  +C  +AI
Sbjct: 544 IIADNCIGC--TACVKVCPVDAISGEKKQAHEIDPDKCIGCGECYEKCKFEAI 594



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP            I  D CI C  C   CPVDAI  + +   E
Sbjct: 531 CPAG-ICADLVKYKIIADNCIGCTACVKVCPVDAISGEKKQAHE 573


>gi|291458640|ref|ZP_06598030.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291419173|gb|EFE92892.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 56

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    EGE+   +  D CIDCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSCG--ACASACPVQAISEGESKYVVDADSCIDCGACEEVCPTGAITAE 56


>gi|322371908|ref|ZP_08046450.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548330|gb|EFW90002.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
          Length = 594

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C  + C +VCPV   +E E+ +    P+ CI C  C   CP DA+  D E
Sbjct: 61  CNHCDDSPCTDVCPVTALWEREDGIVDFDPERCIGCKACMQGCPYDALYIDPE 113



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 23/63 (36%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----EC------IDCG---VCEPECPV 52
           E CI CK   C++ CP D        L I P+     +C      +D G    C   CP 
Sbjct: 91  ERCIGCK--ACMQGCPYDA-------LYIDPETSTAAKCNYCSHRVDTGREPACVTVCPE 141

Query: 53  DAI 55
           DAI
Sbjct: 142 DAI 144


>gi|158634528|gb|ABW76116.1| Fe-hydrogenase 1 [Trimastix pyriformis]
          Length = 439

 Score = 69.8 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPYHAI 168



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 15/61 (24%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    +G      I  ++CI CG C+  CP
Sbjct: 151 DLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQLHCP 210

Query: 52  V 52
            
Sbjct: 211 F 211


>gi|260437208|ref|ZP_05791024.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810521|gb|EFF69726.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
          Length = 481

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC  C    C+  C       GE+   I   +C +CG+C   CP +AI     P
Sbjct: 92  SYTVTDNCQNCPGKACINACKFGAISTGEHHSKIDGSKCKECGMCAKACPYNAIAHLKRP 151


>gi|194290506|ref|YP_002006413.1| formate dehydrogenase iron-sulfur subunit [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224341|emb|CAQ70352.1| FORMATE DEHYDROGENASE, IRON-SULFUR SUBUNIT [Cupriavidus taiwanensis
           LMG 19424]
          Length = 232

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  +    
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSTGTF 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        + +G + ++EKY
Sbjct: 112 GVRGKMD------------KCTFCAGGPEKNGSEAEFEKY 139


>gi|212696805|ref|ZP_03304933.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676095|gb|EEB35702.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 502

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI     P  E
Sbjct: 115 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNAISHTKRPCAE 174



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-----------------NFLAIHPDECIDCGVCEPE 49
           + CI C    CV+ CP +     +                 N   I  D+C+ CG C   
Sbjct: 148 DKCIKCG--KCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRCITA 205

Query: 50  CPVDAIKPDTE 60
           CP  AI   TE
Sbjct: 206 CPFGAISDKTE 216


>gi|325847091|ref|ZP_08169917.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481063|gb|EGC84108.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 502

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI     P  E
Sbjct: 115 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNAISHTKRPCAE 174



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-----------------NFLAIHPDECIDCGVCEPE 49
           + CI C    CV+ CP +     +                 N   I  D+C+ CG C   
Sbjct: 148 DKCIKCG--KCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRCITA 205

Query: 50  CPVDAIKPDTE 60
           CP  AI   TE
Sbjct: 206 CPFGAISDKTE 216


>gi|167630565|ref|YP_001681064.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
          [Heliobacterium modesticaldum Ice1]
 gi|167593305|gb|ABZ85053.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
          [Heliobacterium modesticaldum Ice1]
          Length = 60

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          MT+++ ++C+ C    C   CP +   EG +   I  D+CIDCG C   CPV A +P+ +
Sbjct: 1  MTHIINDDCVNCG--ACAPECPTNAISEGPDKYIIDADKCIDCGACADVCPVGAPRPEGD 58

Query: 61 P 61
           
Sbjct: 59 Q 59


>gi|299066029|emb|CBJ37210.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQ 108


>gi|83746723|ref|ZP_00943772.1| Formate dehydrogenase (cytochrome b) iron-sulfur subunit [Ralstonia
           solanacearum UW551]
 gi|207721373|ref|YP_002251814.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           MolK2]
 gi|207742649|ref|YP_002259041.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum IPO1609]
 gi|83726676|gb|EAP73805.1| Formate dehydrogenase (cytochrome b) iron-sulfur subunit [Ralstonia
           solanacearum UW551]
 gi|206586532|emb|CAQ17119.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum MolK2]
 gi|206594043|emb|CAQ60970.1| formate dehydrogenase (iron-sulfur subunit) protein [Ralstonia
           solanacearum IPO1609]
          Length = 228

 Score = 69.4 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQ 108


>gi|145589578|ref|YP_001156175.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047984|gb|ABP34611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 218

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C+ VCPVDCFY  +  + +H  D CI CG C   CP  A + +T+   
Sbjct: 52  VSVACMHCTDAPCMAVCPVDCFYRTDEGVVLHDKDICIGCGYCSLACPFGAPQFETKGAF 111

Query: 64  ELWLKIN 70
               K++
Sbjct: 112 GTRSKMD 118


>gi|17547091|ref|NP_520493.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           GMI1000]
 gi|17429392|emb|CAD16079.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Ralstonia solanacearum GMI1000]
          Length = 231

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQ 108


>gi|319794274|ref|YP_004155914.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315596737|gb|ADU37803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 206

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV CFY  +  + +H  D CI CG C   CP  A +  ++   
Sbjct: 51  ISVACMHCSDAPCMAVCPVQCFYRTDEGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                     A    +  T     P A   +G + ++EKY
Sbjct: 111 G---------ARGKMDKCTFCAGGPEA---NGSEAEFEKY 138


>gi|166030704|ref|ZP_02233533.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
          27755]
 gi|166029496|gb|EDR48253.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
          27755]
          Length = 56

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ ++CI C    C   CPV    EG+    I+ D CIDCG C  +CPV AI
Sbjct: 1  MAHVIGDDCISCG--SCEAECPVSAISEGDGKYEINADACIDCGACAAQCPVGAI 53


>gi|326791937|ref|YP_004309758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium lentocellum DSM 5427]
 gi|326542701|gb|ADZ84560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium lentocellum DSM 5427]
          Length = 57

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ E+CI C    C   CPV C  EG++   I+ DECI+CG C   CPV A  P+
Sbjct: 1  MAYIINEDCISCG--ACAAECPVSCISEGDSIYVINADECIECGACAGVCPVGAPNPE 56


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T CV+ CP D    E +    I  D+CI CG C   CP DAI
Sbjct: 559 YQITDDCQGC--TKCVDECPGDAISGEAKEQHTIDEDDCIKCGSCINVCPFDAI 610



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGL 63
           D+C  C  C  ECP DAI  + +   
Sbjct: 563 DDCQGCTKCVDECPGDAISGEAKEQH 588


>gi|297616864|ref|YP_003702023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297144701|gb|ADI01458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 58

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M Y +T+ CI C    CV+ CPV    EG++   I P+ C +CG C   CPV+A +P  E
Sbjct: 1  MAYYITDECISCGV--CVDECPVGAISEGDDKYVIDPELCTECGACAEICPVEAPQPAEE 58


>gi|294632939|ref|ZP_06711498.1| ferredoxin-NADP reductase [Streptomyces sp. e14]
 gi|292830720|gb|EFF89070.1| ferredoxin-NADP reductase [Streptomyces sp. e14]
          Length = 514

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLKINSEYAT 75
           L I P  CIDCG C   CPVDAI P          + ++N+ Y  
Sbjct: 1  MLYIDPKSCIDCGACADACPVDAISPADRLTGAQARYAEVNAAYYA 46



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN 31
          M Y+  ++CI C    C + CPVD     + 
Sbjct: 1  MLYIDPKSCIDCG--ACADACPVDAISPADR 29


>gi|256544643|ref|ZP_05472015.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256399532|gb|EEU13137.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 489

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT  C  C    CV VCP +          I  D+CI CG C   CP +AI     P  E
Sbjct: 102 VTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVEACPYNAIAHTKRPCAE 161



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPE 49
           + CI C    CVE CP +     +                     I  D+C+ CG C   
Sbjct: 135 DKCIKCG--KCVEACPYNAIAHTKRPCAESCGVKAIKSDKLGRAEIDDDKCVACGRCITA 192

Query: 50  CPVDAIKPDTE 60
           CP  AI   TE
Sbjct: 193 CPFGAISDKTE 203


>gi|300690757|ref|YP_003751752.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           PSI07]
 gi|299077817|emb|CBJ50455.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score = 69.4 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQ 108


>gi|241765326|ref|ZP_04763303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364964|gb|EER59889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 206

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  ++   
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++           T     P A   +G + ++EKY
Sbjct: 111 GVRGKMDK---------CTFCAGGPEA---NGSQAEFEKY 138


>gi|158634530|gb|ABW76117.1| Fe-hydrogenase 2 [Trimastix pyriformis]
          Length = 292

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 26/63 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y VT  C  C    C+  CP       +    I PD C+ CG C+  CP  AI   T P
Sbjct: 115 AYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGSCQKVCPYHAIVKLTVP 174

Query: 62  GLE 64
             E
Sbjct: 175 CEE 177



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    +G N    I  ++CI CG C+ +CP
Sbjct: 151 DLCVRCGSCQKVCPYHAIVKLTVPCEEACPVGAIAKGANGHAEIDFNKCIHCGQCQVKCP 210

Query: 52  VDAI 55
             ++
Sbjct: 211 FGSV 214


>gi|291280537|ref|YP_003497372.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
 gi|290755239|dbj|BAI81616.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
          Length = 56

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+T+ C  C    C + CPV    EG+    I PD C DCG C   CPVDAI+
Sbjct: 1  MAHVITDECTNCG--ACEDECPVGAISEGDGKRVIDPDTCTDCGACAEVCPVDAIE 54


>gi|226324119|ref|ZP_03799637.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
 gi|225207668|gb|EEG90022.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
          Length = 482

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VTENC  C    C+  C       G     I   +C +CG C   CP +AI     P
Sbjct: 92  SYTVTENCQNCLGKACINACKFGAIEPGHYRSHIDASKCKECGQCAKACPYNAIAHLKRP 151



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
             C   CPVD     E+ ++I   ++CI CG C   CP  AI
Sbjct: 150 RPCKFSCPVDAITYDEHGISIIDKNKCIRCGKCIHSCPFGAI 191


>gi|253579276|ref|ZP_04856546.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849374|gb|EES77334.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 505

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +TE C  C    CVEVCP    +       I  D CI CG C   CP +AI     P
Sbjct: 115 ITEGCQGCLEHPCVEVCPKKAVHMEGGRSHIDEDACIKCGKCLEACPYNAIIKQERP 171



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C+E CP +   + E                     I  D+C+ CG
Sbjct: 143 SHIDEDACIKCG--KCLEACPYNAIIKQERPCSKACGMNAIGSDEYGRAEIDQDKCVSCG 200

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 201 QCLVSCPFSAI 211


>gi|311697010|gb|ADP99883.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [marine
          bacterium HP15]
          Length = 160

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 14 ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQF 67


>gi|27380587|ref|NP_772116.1| formate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum
           USDA 110]
 gi|27353752|dbj|BAC50741.1| formate dehydrogenase iron-sulfur subunit [Bradyrhizobium japonicum
           USDA 110]
          Length = 198

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A         
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADGVVLHSKDLCIGCGYCFYACPFGAP-------- 102

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
             + K+ +  +    +  T     P A   DG K++YEKY
Sbjct: 103 -QYPKVGNFGSRGKMDKCTYCAGGPEA---DGSKEEYEKY 138


>gi|256751333|ref|ZP_05492212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749715|gb|EEU62740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 372

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|164687083|ref|ZP_02211111.1| hypothetical protein CLOBAR_00709 [Clostridium bartlettii DSM
          16795]
 gi|164603968|gb|EDQ97433.1| hypothetical protein CLOBAR_00709 [Clostridium bartlettii DSM
          16795]
          Length = 67

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C + CP D    G++  +I+ DEC+DCG C   CP DAI  +
Sbjct: 12 MAYKITDECIACG--SCADECPNDAITAGDDKYSINADECLDCGSCADACPNDAIVEE 67



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                DECI CG C  ECP DAI    +
Sbjct: 12 MAYKITDECIACGSCADECPNDAITAGDD 40


>gi|257466098|ref|ZP_05630409.1| hydrogenase, Fe-only [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917255|ref|ZP_07913495.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691130|gb|EFS27965.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 652

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 219 FKITEKCIGC--TACARVCPVQCITGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 274



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           T  C  C    CV  CPV   +EG++ L +  D
Sbjct: 252 TSRCTHCGQ--CVSACPVGAIFEGDHTLKLLKD 282


>gi|323701729|ref|ZP_08113400.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
 gi|323533265|gb|EGB23133.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
          Length = 467

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+ C  C    C   CP       +N   I    CI+CG C   CP  AI   T P
Sbjct: 93  YVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDHTVCIECGKCAKACPYHAIIEITRP 151



 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 19/64 (29%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCGVCEPECP 51
           CI C    C + CP     E                       I  D C+ CG+C   CP
Sbjct: 130 CIECG--KCAKACPYHAIIEITRPCERACALKAVKIDDSRKAVIDSDRCVSCGMCVTVCP 187

Query: 52  VDAI 55
             AI
Sbjct: 188 FGAI 191


>gi|300703376|ref|YP_003744978.1| formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CFBP2957]
 gi|299071039|emb|CBJ42348.1| Formate dehydrogenase iron-sulfur subunit [Ralstonia solanacearum
           CFBP2957]
          Length = 228

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  ++
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPSQ 108


>gi|257452106|ref|ZP_05617405.1| hydrogenase, Fe-only [Fusobacterium sp. 3_1_5R]
 gi|317058652|ref|ZP_07923137.1| hydrogenase [Fusobacterium sp. 3_1_5R]
 gi|313684328|gb|EFS21163.1| hydrogenase [Fusobacterium sp. 3_1_5R]
          Length = 652

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 219 FKITEKCIGC--TACARVCPVQCITGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 274



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           T  C  C    CV  CPV   +EG++ L +  D
Sbjct: 252 TSRCTHCGQ--CVSACPVGAIFEGDHTLKLLKD 282


>gi|167756634|ref|ZP_02428761.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|237733922|ref|ZP_04564403.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702809|gb|EDS17388.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|229383003|gb|EEO33094.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 507

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+  C  C    C+EVCP +     +    I  D+CI CG+C+  CP DAI
Sbjct: 115 VSSGCQACLAHPCIEVCPKNAISFKDGKAYIDQDKCIKCGLCKTNCPYDAI 165



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF---------------YEGENF--LAIHPDECIDCG 44
            Y+  + CI C    C   CP D                  E + +    I+ D+C+ CG
Sbjct: 143 AYIDQDKCIKCGL--CKTNCPYDAILKRERPCAKACGMDAIETDEYGNAHINYDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCLVSCPFGAI 211


>gi|167038788|ref|YP_001661773.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|300913627|ref|ZP_07130944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307723358|ref|YP_003903109.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|166853028|gb|ABY91437.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X514]
 gi|300890312|gb|EFK85457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307580419|gb|ADN53818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X513]
          Length = 372

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|167038468|ref|YP_001666046.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116862|ref|YP_004187021.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857302|gb|ABY95710.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929953|gb|ADV80638.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 372

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+      +   I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNSSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|113868891|ref|YP_727380.1| formate dehydrogenase iron-sulfur subunit [Ralstonia eutropha H16]
 gi|113527667|emb|CAJ94012.1| formate dehydrogenase iron-sulfur subunit [Ralstonia eutropha H16]
          Length = 225

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           ++  C+ C    C+ VCPVDCFY  E+ + +H  D CI CG C   CP  A +  +
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYRTEDGVVLHDKDVCIGCGYCSYACPFGAPQFPS 107


>gi|326389280|ref|ZP_08210848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994643|gb|EGD53067.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 372

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|83311771|ref|YP_422035.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82946612|dbj|BAE51476.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 211

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A +  +       
Sbjct: 54  ACMHCSDAPCMAVCPVDCFYQTGDGIVLHNKDLCIGCGYCFYACPFGAPQYPSTGNFGGR 113

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            K++           T     P A       +KY
Sbjct: 114 GKMDK---------CTFCAGGPEADHSKAELEKY 138


>gi|289577411|ref|YP_003476038.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|289527124|gb|ADD01476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
          Length = 372

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|167747433|ref|ZP_02419560.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|317471162|ref|ZP_07930533.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
 gi|167652795|gb|EDR96924.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|316901377|gb|EFV23320.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
          Length = 56

 Score = 69.0 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ CI C    C   CP     EG+    I  D C+DCG C   CP  AI  +
Sbjct: 1  MAYVISDACISCG--ACEGTCPAGAISEGDGQYVIDADTCLDCGACADGCPTGAISQE 56


>gi|237654364|ref|YP_002890678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237625611|gb|ACR02301.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 212

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY+ E+ + +H  D+CI CG C   CP  A +    P  
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYKTEDGVVLHDKDKCIGCGYCFYACPFGAPQFPNGPA- 109

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +  A    +  T     P   +  G   +YEKY
Sbjct: 110 -------AFGARGKMDKCTFCAGGP---EETGSAAEYEKY 139


>gi|153853057|ref|ZP_01994466.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
 gi|149753843|gb|EDM63774.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
          Length = 503

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKGAISMVNGKSYIDQEKCIKCGKCKSVCPYDAISKKERP 175



 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     ++PD+C+ CG
Sbjct: 147 SYIDQEKCIKCG--KCKSVCPYDAISKKERPCAKACGVNAIENDKVGRAYVNPDKCVSCG 204

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 205 MCMVNCPFGAISD 217


>gi|297543698|ref|YP_003676000.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841473|gb|ADH59989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 372

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|89902029|ref|YP_524500.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346766|gb|ABD70969.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 210

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  ++   
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCAYACPFGAPQFPSQGTF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        + +G + ++EKY
Sbjct: 111 GVRGKMD------------KCTFCAGGPETNGSQAEFEKY 138


>gi|254512467|ref|ZP_05124534.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221536178|gb|EEE39166.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 169

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 23 ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 76


>gi|33601105|ref|NP_888665.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           bronchiseptica RB50]
 gi|33575540|emb|CAE32618.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           bronchiseptica RB50]
          Length = 209

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  +E   
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGAPQFPSEGAF 110

Query: 64  ELWLKIN 70
            +  K++
Sbjct: 111 GVRGKMD 117


>gi|33596552|ref|NP_884195.1| formate dehydrogenase iron-sulfur subunit [Bordetella parapertussis
           12822]
 gi|33566321|emb|CAE37234.1| formate dehydrogenase iron-sulfur subunit [Bordetella
           parapertussis]
          Length = 209

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  +E   
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGAPQFPSEGAF 110

Query: 64  ELWLKIN 70
            +  K++
Sbjct: 111 GVRGKMD 117


>gi|323485418|ref|ZP_08090766.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
          WAL-14163]
 gi|323694183|ref|ZP_08108360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium symbiosum WAL-14673]
 gi|323401281|gb|EGA93631.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
          WAL-14163]
 gi|323501760|gb|EGB17645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium symbiosum WAL-14673]
          Length = 56

 Score = 68.6 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T++C+ C    C   CPV    +G+    I  + CIDCG C   CP  AI+ +
Sbjct: 1  MAYVITDSCVSCG--ACAGDCPVGAISQGDGKYEIDANTCIDCGSCAGSCPTGAIEQE 56


>gi|134299648|ref|YP_001113144.1| hydrogenase large subunit [Desulfotomaculum reducens MI-1]
 gi|134052348|gb|ABO50319.1| hydrogenase large subunit domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVVT+ C  C    C   CP       +N   I  + C++CG C   CP +AI   T P
Sbjct: 93  YVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDQNSCVECGKCANACPYNAIIEVTRP 151



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++   +C+ C    C   CP +   E                       I  + C  CG
Sbjct: 123 AFIDQNSCVECG--KCANACPYNAIIEVTRPCERACALKAIKVDDSRKAVIDHELCASCG 180

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 181 LCVTVCPFGAI 191


>gi|289422669|ref|ZP_06424509.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
 gi|289156848|gb|EFD05473.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
          Length = 515

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  T  C  C    CVEVCP +          I  ++CI CG C+  CP  AI     P
Sbjct: 116 FFTTNTCRGCLARPCVEVCPKNAISMVNGKSFIDQEKCIKCGRCKSSCPYGAIAKLERP 174


>gi|332654222|ref|ZP_08419966.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
 gi|332517308|gb|EGJ46913.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
          Length = 505

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           VT  C  C    C+EVCP D     +    I   +CI CG C   CP  AI     P  E
Sbjct: 116 VTNMCQGCLAHPCMEVCPKDAISLVQGKSFIDQTKCIKCGKCADACPYGAILKLERPCAE 175



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 19/66 (28%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCGVCEPECP 51
           CI C    C + CP     + E   A                 I  D+C+ CG+C   CP
Sbjct: 151 CIKCG--KCADACPYGAILKLERPCAEACGMDAIGSDELGRAKIDYDKCVSCGMCLVNCP 208

Query: 52  VDAIKP 57
             AI  
Sbjct: 209 FGAISD 214


>gi|218781349|ref|YP_002432667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762733|gb|ACL05199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 369

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C +VCPV      +    I    CI CG C   CP  AI PD    +
Sbjct: 190 VNKEKCTGCG--SCEDVCPVGAAKLEDEISIIDAKVCIGCGECMTVCPEKAINPDWATDI 247

Query: 64  ELWLKINSEYA 74
             +++  +EYA
Sbjct: 248 GAFMERMTEYA 258


>gi|154502471|ref|ZP_02039531.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
 gi|153796867|gb|EDN79287.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
          Length = 506

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 119 YEVSNMCKGCLAHPCSEVCPKGAISMVNGKSYIDQEKCIKCGKCKAVCPYDAIAKKERP 177



 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 25/99 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  ++C+ CG
Sbjct: 149 SYIDQEKCIKCG--KCKAVCPYDAIAKKERPCKNACGVGAIVSDKYGRAYIDTEKCVSCG 206

Query: 45  VCEPECPVDA------IKPDTEPGLELWLKINSEYATQW 77
           +C   CP  A      I   T    E   +I +E A  +
Sbjct: 207 MCMVSCPFGAISDKSQIFQLTRALQEEGSEIIAEIAPAF 245


>gi|227871720|ref|ZP_03990129.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
 gi|227842429|gb|EEJ52650.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
          Length = 488

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +Y VT+NC LC    C   C        +    I P +C +CG+C   CP  AI   T P
Sbjct: 95  SYSVTDNCRLCLGKACQNSCHFGAITMTDQRAHIDPMKCKECGMCATACPYSAIAQLTRP 154



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
             C + CPV+     EN L  I  + CI CG C   CP  AI
Sbjct: 153 RPCKKPCPVNAITYDENGLCVIDDNRCIRCGQCVHSCPFGAI 194


>gi|239817031|ref|YP_002945941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803608|gb|ACS20675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 207

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV CFY  E  + +H  D CI CG C   CP  A +  ++   
Sbjct: 51  ISVACMHCSDAPCMAVCPVQCFYRTEEGVVLHDKDVCIGCGYCSYACPFGAPQFPSQGTF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++           T     P A   +G + ++EKY
Sbjct: 111 GVRGKMDK---------CTFCAGGPEA---NGSEAEFEKY 138


>gi|163794797|ref|ZP_02188767.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180070|gb|EDP64595.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 197

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFYE    + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYESNEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|145218852|ref|YP_001129561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205016|gb|ABP36059.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 522

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C  C+   CV++CPV+  ++ ++ +       CI C  C   CP +A+  D E 
Sbjct: 51  YFTVLRCNHCEEPPCVDICPVEALHKRDDGIVDFDSRRCIGCKACAQACPYNAVYIDPES 110

Query: 62  G 62
           G
Sbjct: 111 G 111


>gi|317502269|ref|ZP_07960441.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089012|ref|ZP_08337919.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896330|gb|EFV18429.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406464|gb|EGG85977.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 56

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSCG--SCEAECPVGAISEGDGKYEIDADACVDCGACEAACPTGAISAE 56


>gi|125974593|ref|YP_001038503.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum
          ATCC 27405]
 gi|125714818|gb|ABN53310.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
          thermocellum ATCC 27405]
          Length = 60

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T+ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA + 
Sbjct: 5  MAYFITDACISCG--ACESECPVSCISPGDSVYVIDADACIECGACANVCPVDAPQQ 59



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 13/28 (46%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
                D CI CG CE ECPV  I P  
Sbjct: 5  MAYFITDACISCGACESECPVSCISPGD 32


>gi|288575184|ref|ZP_06393540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568466|gb|EFC90024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 288

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    C   CPV           I  D CI CG C   CP  AI  D    +
Sbjct: 148 VDDEKCVGCG--RCFRNCPVKAISMTGGKAVIDKDVCIGCGECLTVCPASAISLDWRTDV 205

Query: 64  ELWLKINSEYA 74
             + +  +EYA
Sbjct: 206 VQFHRRMAEYA 216



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
           +++  ++C+ CG C   CPV AI
Sbjct: 146 MSVDDEKCVGCGRCFRNCPVKAI 168


>gi|259416768|ref|ZP_05740688.1| formate dehydrogenase iron-sulfur subunit [Silicibacter sp.
           TrichCH4B]
 gi|259348207|gb|EEW59984.1| formate dehydrogenase iron-sulfur subunit [Silicibacter sp.
           TrichCH4B]
          Length = 197

 Score = 68.6 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|153814717|ref|ZP_01967385.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
 gi|145847748|gb|EDK24666.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
          Length = 503

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y V+  C  C    C EVCP D          I  ++CI CG C+  CP DAI     P 
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNGRSYIDQEKCIKCGKCKSVCPYDAIAKKERPC 176

Query: 63  LE 64
            +
Sbjct: 177 QK 178



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  ++C+ CG
Sbjct: 147 SYIDQEKCIKCG--KCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCG 204

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 205 MCMVSCPFGAISD 217


>gi|99080243|ref|YP_612397.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036523|gb|ABF63135.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 197

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|317500246|ref|ZP_07958476.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087521|ref|ZP_08336454.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898372|gb|EFV20413.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404066|gb|EGG83615.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 503

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y V+  C  C    C EVCP D          I  ++CI CG C+  CP DAI     P 
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNGRSYIDQEKCIKCGKCKSVCPYDAIAKKERPC 176

Query: 63  LE 64
            +
Sbjct: 177 QK 178



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D   + E                     I  ++C+ CG
Sbjct: 147 SYIDQEKCIKCG--KCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCG 204

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 205 MCMVSCPFGAISD 217


>gi|331091265|ref|ZP_08340106.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404712|gb|EGG84251.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 502

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y V+  C  C    C EVCPV      +    I   +CI CG C+  CP DAI     P 
Sbjct: 116 YEVSNMCKGCVAHPCKEVCPVGAISMKDGHSFIDQTKCIKCGKCKANCPYDAIAKKERPC 175

Query: 63  LE 64
            +
Sbjct: 176 QK 177



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 19/66 (28%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPECP 51
           CI C    C   CP D   + E                     I  D+C+ CG+C   CP
Sbjct: 153 CIKCG--KCKANCPYDAIAKKERPCQKSCGVNAIVSDKYGRAKIDNDKCVSCGMCMVSCP 210

Query: 52  VDAIKP 57
             AI  
Sbjct: 211 FGAISD 216


>gi|171060397|ref|YP_001792746.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170777842|gb|ACB35981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 214

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPVDCFY  ++ + +H  D CI CG C   CP  A +  +    
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYRTDDGVVLHDKDICIGCGYCSYACPFGAPQFPSNGAF 110

Query: 64  ELWLKIN 70
            L  K++
Sbjct: 111 GLRGKMD 117


>gi|121535575|ref|ZP_01667382.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305815|gb|EAX46750.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 499

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C+  CP       +N   I  + C++CG+C+  CP  AI   + P
Sbjct: 106 FIVTDACRNCVAHHCINSCPKKAIAVVQNRAFIDKNRCVECGLCKRSCPYGAIIEVSRP 164



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++    C+ C    C   CP     E                  +    I+ D+C+ CG
Sbjct: 136 AFIDKNRCVECGL--CKRSCPYGAIIEVSRPCERACDLKAVVAGADRRAVINYDKCVQCG 193

Query: 45  VCEPECPVDAI 55
            C+  CP  AI
Sbjct: 194 ACKIACPFGAI 204


>gi|310827887|ref|YP_003960244.1| hypothetical protein ELI_2298 [Eubacterium limosum KIST612]
 gi|308739621|gb|ADO37281.1| conserved domain protein [Eubacterium limosum KIST612]
          Length = 56

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+++  CI C    CV  CPV+   +G++   I+ DEC+DCGVCE  CP  AI  +
Sbjct: 1  MAYIISGECIACGG--CVTECPVEAISKGDDRYIINADECVDCGVCEETCPTGAIISE 56


>gi|90426047|ref|YP_534417.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris BisB18]
 gi|90108061|gb|ABD90098.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas
          palustris BisB18]
          Length = 205

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 2  TYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          TY +T    C  C+   C  VCPVD     +  + ++   CI C +C   CP  AI P
Sbjct: 42 TYEITAPVQCRHCEDAPCARVCPVDAIKLTDGQVVLNEQTCIGCKMCAIACPFGAITP 99


>gi|323968658|gb|EGB64063.1| DMSO reductase anchor subunit protein [Escherichia coli M863]
 gi|327252703|gb|EGE64357.1| dimethylsulfoxide reductase, chain B [Escherichia coli STEC_7v]
          Length = 489

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|307243639|ref|ZP_07525782.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493008|gb|EFM65018.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 516

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y  T+ C  C    CVEVCP            I  D CI CG C+  CP DAI     P
Sbjct: 116 YKTTDICRGCLARPCVEVCPKKAVSMVNGKSFIDQDLCIKCGRCKAVCPYDAIAKLERP 174



 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C  VCP D   + E                    +I  D+C+ CG
Sbjct: 146 SFIDQDLCIKCG--RCKAVCPYDAIAKLERPCARACGMDAIESDKYGRASIDYDKCVSCG 203

Query: 45  VCEPECPVDAI 55
           VC   CP  AI
Sbjct: 204 VCISSCPFGAI 214


>gi|328955718|ref|YP_004373051.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
 gi|328456042|gb|AEB07236.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
          Length = 517

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y VT  C  C    C E+CP       +    I  D CI+CG C   CP  AI     P 
Sbjct: 121 YEVTNMCQGCLAHPCREICPTGAVTFVDKKAHIDKDACINCGRCASICPYTAIAHRERPC 180

Query: 63  LELWLKINSEYATQW 77
                 +N+  + +W
Sbjct: 181 AAACG-MNAIASDEW 194



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
            ++  + CI C    C  +CP       E                     I  D C+ CG
Sbjct: 151 AHIDKDACINCG--RCASICPYTAIAHRERPCAAACGMNAIASDEWGRAEIDYDRCVSCG 208

Query: 45  VCEPECPVDAI 55
            C   CP  AI
Sbjct: 209 QCLVNCPFGAI 219


>gi|257463022|ref|ZP_05627425.1| hydrogenase, Fe-only [Fusobacterium sp. D12]
          Length = 652

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 219 FKITEKCIGC--TACARVCPVKCIAGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 274



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           T  C  C    CV  CPV   +EG++ L +  D
Sbjct: 252 TSRCTHCGQ--CVSACPVGAIFEGDHTLKLLKD 282


>gi|229825982|ref|ZP_04452051.1| hypothetical protein GCWU000182_01346 [Abiotrophia defectiva ATCC
          49176]
 gi|229789724|gb|EEP25838.1| hypothetical protein GCWU000182_01346 [Abiotrophia defectiva ATCC
          49176]
          Length = 56

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ + CI C    C  VCPV+C  EG     +    C+DCG CE  CP  AI  +
Sbjct: 1  MAHVINDECISCG--ACASVCPVECISEGSVHYEVDASACVDCGACEESCPTGAIFQE 56


>gi|227501325|ref|ZP_03931374.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227216558|gb|EEI81964.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 508

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 25/61 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            VT+ C  C    CV VCP +          I  D+CI CG C   CP  AI     P  
Sbjct: 114 TVTDQCHACIGHPCVNVCPKNAVSYSAKGAYIDQDKCIKCGKCVDACPYHAINHQKRPCA 173

Query: 64  E 64
           E
Sbjct: 174 E 174



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 19/76 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
            Y+  + CI C    CV+ CP       +   A                 I+ D+C+ CG
Sbjct: 143 AYIDQDKCIKCG--KCVDACPYHAINHQKRPCAESCGVKAISSDDLGRADINEDKCVACG 200

Query: 45  VCEPECPVDAIKPDTE 60
            C   CP  AI   +E
Sbjct: 201 RCIISCPFGAISDKSE 216


>gi|163858981|ref|YP_001633279.1| formate dehydrogenase, iron-sulfur subunit [Bordetella petrii DSM
           12804]
 gi|163262709|emb|CAP45012.1| Formate dehydrogenase, iron-sulfur subunit [Bordetella petrii]
          Length = 209

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  ++
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHNKDTCIGCGYCSYACPFGAPQFPSQ 107


>gi|300856866|ref|YP_003781850.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
 gi|300436981|gb|ADK16748.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
          Length = 495

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VTE C  C    C+EVCP     + +    I+ D C +CG+C+  CP +AI     P
Sbjct: 104 YRVTEACRGCIQHKCMEVCPAKAISKVDGRAHINQDICKECGMCKKVCPYNAIAEVMRP 162



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDC 43
            ++  + C  C    C +VCP +   E                        I  ++CI+C
Sbjct: 134 AHINQDICKECG--MCKKVCPYNAIAEVMRPCKKSCPTGALEINSKNRMAMIEKEKCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  A+  
Sbjct: 192 GACMAACPFGAVSD 205


>gi|291526378|emb|CBK91965.1| 4Fe-4S binding domain [Eubacterium rectale DSM 17629]
 gi|291526823|emb|CBK92409.1| 4Fe-4S binding domain [Eubacterium rectale M104/1]
          Length = 56

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C   CPV     G++   I  D C+DCG C   CP  AI
Sbjct: 1  MAYVISDSCVSCG--TCAGECPVGAISAGDSQYVIDADSCLDCGTCAGVCPTGAI 53


>gi|103485838|ref|YP_615399.1| cyclic nucleotide-binding protein [Sphingopyxis alaskensis RB2256]
 gi|98975915|gb|ABF52066.1| cyclic nucleotide-binding protein [Sphingopyxis alaskensis RB2256]
          Length = 811

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C  C+H  C+  CP +  + G +        CI CG C   CP   I+ +  P  +
Sbjct: 673 VPTSCRHCEHPHCMADCPPNVIHRGPDGEVFMEPGCIGCGNCMRNCPYGVIRMEAAPPPK 732

Query: 65  L 65
            
Sbjct: 733 P 733


>gi|56696671|ref|YP_167032.1| formate dehydrogenase, iron-sulfur subunit, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678408|gb|AAV95074.1| formate dehydrogenase, iron-sulfur subunit, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 197

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|78189918|ref|YP_380256.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           chlorochromatii CaD3]
 gi|78172117|gb|ABB29213.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium chlorochromatii CaD3]
          Length = 517

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C    CV++CPV+  ++ E+ +       CI C  C   CP  A+  D E
Sbjct: 51  YFTVLRCNHCAEPPCVDICPVEALHKREDGIVDFDKRRCIGCKACAQACPYGALYIDPE 109


>gi|291533213|emb|CBL06326.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Megamonas hypermegale ART12/1]
          Length = 55

 Score = 68.3 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +T++CI C    C   CPV    EGEN   I  D C++CG C+  CP  AI+
Sbjct: 1  MAYKITDDCISCG--ACAGTCPVGAISEGENHYEIDADMCVECGACQAGCPAGAIE 54


>gi|169335612|ref|ZP_02862805.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258350|gb|EDS72316.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 56

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+T+ CI C    C   CPV    EG+    I    CIDCG C   CP  A +P+
Sbjct: 1  MAHVITDECISCG--ACAGECPVGAISEGDGKYEIDAATCIDCGACAGACPTGAAQPE 56


>gi|317050998|ref|YP_004112114.1| hypothetical protein Selin_0818 [Desulfurispirillum indicum S5]
 gi|316946082|gb|ADU65558.1| hypothetical protein Selin_0818 [Desulfurispirillum indicum S5]
          Length = 56

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ C+ C    C   CPV    +G+    I  D CIDCG CE  CP  AI
Sbjct: 1  MAYVISDACVNCG--ACEPECPVSAISQGDAIYVIDADTCIDCGACESVCPSGAI 53


>gi|160881872|ref|YP_001560840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium phytofermentans ISDg]
 gi|160430538|gb|ABX44101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          phytofermentans ISDg]
          Length = 55

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV+ + CI C    C   CPV    EG +   I  D C+DCG C   CP  AI+
Sbjct: 1  MAYVINDGCISCG--ACASECPVGAISEGASHYEIDADACLDCGACASTCPTGAIE 54


>gi|294495829|ref|YP_003542322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666828|gb|ADE36677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 369

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C    CVEVCP D      +N   I  D+CI CG C   CPV+AI  + E  + 
Sbjct: 193 AEICNGC--ATCVEVCPCDAMEINNDNISTIDDDKCIGCGECMTVCPVEAIGFNYE-NIP 249

Query: 65  LWLKINSEYA 74
            ++++ +EYA
Sbjct: 250 DFMEMMTEYA 259


>gi|121535881|ref|ZP_01667679.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305546|gb|EAX46490.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 368

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C  VCP +     +   +I  D+CI CG C   CPV A+  D    L ++L+
Sbjct: 195 CIGC--AKCAAVCPENAITVSDKKASIAVDKCIGCGECLTVCPVKAVGMDWATDLAVFLE 252

Query: 69  INSEYATQWPNITTKK 84
             +EYA  +     K+
Sbjct: 253 RMTEYAYGFAKAHEKR 268



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
            + +   +CI C  C   CP +AI
Sbjct: 187 KIMVDQAKCIGCAKCAAVCPENAI 210


>gi|83855227|ref|ZP_00948757.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83941749|ref|ZP_00954211.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. EE-36]
 gi|83843070|gb|EAP82237.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83847569|gb|EAP85444.1| formate dehydrogenase, iron-sulfur subunit, putative [Sulfitobacter
           sp. EE-36]
          Length = 197

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDDGIVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|312143185|ref|YP_003994631.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium sp. 'sapolanicus']
 gi|311903836|gb|ADQ14277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium sp. 'sapolanicus']
          Length = 56

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ ++CILC    C   CPVDC  EG+    I  DECIDC  C   CPVDAI
Sbjct: 1  MAHVINDDCILCG--ACAPECPVDCISEGDTKYEIDADECIDCAACVSVCPVDAI 53


>gi|169351005|ref|ZP_02867943.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
 gi|169292067|gb|EDS74200.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
          Length = 507

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+E+CP +          I  D+CI CG+C+  CP DAI     P
Sbjct: 113 YEVSNGCQACLAHPCIEICPKNAISFKNGKAYIDQDKCIKCGLCKNNCPYDAILKKERP 171



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
            Y+  + CI C    C   CP D   + E                     I+ D+C+ CG
Sbjct: 143 AYIDQDKCIKCGL--CKNNCPYDAILKKERPCAKACGMNAIESDEYGNAHINYDKCVSCG 200

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 201 MCLVSCPFGAI 211


>gi|291522007|emb|CBK80300.1| 4Fe-4S binding domain [Coprococcus catus GD/7]
          Length = 56

 Score = 68.3 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CPV    EG+    I  + C+DCG C   CP +AI  +
Sbjct: 1  MAYVISDACVSCG--TCAGECPVGAISEGDGKYVIDANACLDCGSCAGACPTEAISQE 56


>gi|325280763|ref|YP_004253305.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
 gi|324312572|gb|ADY33125.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
          Length = 56

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C   CPV     G +   I P+ C DCG C   CPV+AIK 
Sbjct: 1  MAYVISDDCISCG--TCEGECPVGAISMGADHYEIDPNACTDCGTCAGVCPVEAIKQ 55


>gi|114763304|ref|ZP_01442728.1| formate dehydrogenase, iron-sulfur subunit, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114544102|gb|EAU47112.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. HTCC2601]
          Length = 197

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|118591771|ref|ZP_01549167.1| formate dehydrogenase, iron-sulfur subunit, putative [Stappia
           aggregata IAM 12614]
 gi|118435764|gb|EAV42409.1| formate dehydrogenase, iron-sulfur subunit, putative [Stappia
           aggregata IAM 12614]
          Length = 197

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTEEGVVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|317133838|ref|YP_004089749.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
 gi|315450300|gb|ADU23863.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
          Length = 478

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C +VCP        N +  I   +CI+CG C   CP  AI     P
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAHIDKSKCIECGRCSKVCPYSAITNRVRP 153

Query: 62  GL 63
             
Sbjct: 154 CQ 155


>gi|254485944|ref|ZP_05099149.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseobacter sp. GAI101]
 gi|214042813|gb|EEB83451.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseobacter sp. GAI101]
          Length = 197

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|218961482|ref|YP_001741257.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
          bidirectional hydrogenase), subunit alpha (hymC-like)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730139|emb|CAO81051.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
          bidirectional hydrogenase), subunit alpha (hymC-like)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 435

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          ++ +NC  C  T CV VCP +     ++   I P  C+DCG C   C   AI P ++P
Sbjct: 12 ILADNCTGC--TACVRVCPTEAIRVRDHKANIDPYRCVDCGNCVNVCRFHAIIPLSDP 67



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D C  C  C   CP +AI+
Sbjct: 10 LQILADNCTGCTACVRVCPTEAIR 33


>gi|154150339|ref|YP_001403957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998891|gb|ABS55314.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 368

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C EVCP            I  D CI C  C   CPV AI+ D E  + L+ +
Sbjct: 195 CTGCG--KCTEVCPKSAITLRNKKSVIDKDLCIGCFECMTVCPVHAIEVDWETEIPLFTE 252

Query: 69  INSEYA 74
              EYA
Sbjct: 253 RMVEYA 258


>gi|304316617|ref|YP_003851762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778119|gb|ADL68678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 56

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +++T+ CI C    C   CPV+  +EG     +  D CIDCG CE  CP  A+K +
Sbjct: 1  MAHIITDECISCG--ACAAECPVEAIHEGTGKYEVDADTCIDCGACEAVCPTGAVKAE 56


>gi|257066859|ref|YP_003153115.1| hydrogenase large subunit domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798739|gb|ACV29394.1| hydrogenase large subunit domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 508

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 25/61 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            VT+ C  C    CV VCP +          I  D+CI CG C   CP  AI     P  
Sbjct: 114 TVTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVAACPYQAINHQKRPCA 173

Query: 64  E 64
           E
Sbjct: 174 E 174



 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--------------GENFL---AIHPDECIDCGVCEPE 49
           + CI C    CV  CP                    G + L    I  D+C+ CG C   
Sbjct: 148 DKCIKCG--KCVAACPYQAINHQKRPCAESCGVKAIGSDELGRAKIDEDKCVACGRCIIT 205

Query: 50  CPVDAIKPDTE 60
           CP  AI   +E
Sbjct: 206 CPFGAISDKSE 216


>gi|298375682|ref|ZP_06985639.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
 gi|298268182|gb|EFI09838.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
          Length = 459

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + CI C  T C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15 DRCIGC--THCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D CI C  C  ECP  AI+
Sbjct: 10 LKIDNDRCIGCTHCMKECPTGAIR 33


>gi|121603744|ref|YP_981073.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592713|gb|ABM36152.1| formate dehydrogenase beta subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 206

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  +    
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDICIGCGYCSYACPFGAPQFPSTGSF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        +++G + ++EKY
Sbjct: 111 GVRGKMD------------KCTFCAGGPEVNGSQAEFEKY 138


>gi|149375897|ref|ZP_01893664.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
 gi|149359777|gb|EDM48234.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Marinobacter
           algicola DG893]
          Length = 202

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 56  ISVACMHCSDAPCMAVCPVDCFYQTEDGVVLHSKDLCIGCGYCFYACPFGAPQF 109


>gi|121595757|ref|YP_987653.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222111960|ref|YP_002554224.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120607837|gb|ABM43577.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221731404|gb|ACM34224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 206

 Score = 67.9 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPV+CFY  E  + +H  D CI CG C   CP  A +  ++
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTEEGVVLHDKDVCIGCGYCSYACPFGAPQFPSQ 107


>gi|225570648|ref|ZP_03779671.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
 gi|225160566|gb|EEG73185.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
          Length = 274

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y V+  C  C    C+EVCP D     +    I  ++CI CG C+  CP DAI     P 
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKDAVSMVKGRSYIDQEKCIKCGKCKSVCPYDAISRKERPC 176

Query: 63  LE 64
            +
Sbjct: 177 QK 178



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +Y+  E CI C    C  VCP D     E                     I+ ++C+ CG
Sbjct: 147 SYIDQEKCIKCG--KCKSVCPYDAISRKERPCQKACGVGAIESDNCGRARINNEKCVSCG 204

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 205 MCMVSCPFGAISD 217


>gi|23014297|ref|ZP_00054120.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 196

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A +  +       
Sbjct: 54  ACMHCSDAPCMAVCPVDCFYQTSDGIVLHNKDLCIGCGYCFYACPFGAPQYPSTGNFGGR 113

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            K++           T     P A       +KY
Sbjct: 114 GKMDK---------CTFCAGGPEADNSKAELEKY 138


>gi|126727364|ref|ZP_01743199.1| formate dehydrogenase, iron-sulfur subunit, putative
           [Rhodobacterales bacterium HTCC2150]
 gi|126703359|gb|EBA02457.1| formate dehydrogenase, iron-sulfur subunit, putative
           [Rhodobacterales bacterium HTCC2150]
          Length = 197

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQSEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|91786840|ref|YP_547792.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696065|gb|ABE42894.1| formate dehydrogenase beta subunit [Polaromonas sp. JS666]
          Length = 205

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV+CFY  +  + +H  D CI CG C   CP  A +  +    
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTDEGVVLHDKDVCIGCGYCSYACPFGAPQFPSSGTF 110

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            +  K++            K        +++G + ++EKY
Sbjct: 111 GVRGKMD------------KCTFCAGGPEVNGSQAEFEKY 138


>gi|325264637|ref|ZP_08131367.1| conserved domain protein [Clostridium sp. D5]
 gi|324030299|gb|EGB91584.1| conserved domain protein [Clostridium sp. D5]
          Length = 56

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + + C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI+ +
Sbjct: 1  MAHFINDECVSCG--SCEGECPVGAIAEGDGKYVIDADACVDCGACEGACPTGAIQAE 56


>gi|255013558|ref|ZP_05285684.1| ferredoxin 2 [Bacteroides sp. 2_1_7]
          Length = 459

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + CI C  T C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15 DRCIGC--THCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D CI C  C  ECP  AI+
Sbjct: 10 LKIDNDRCIGCTHCMKECPTGAIR 33


>gi|256840003|ref|ZP_05545512.1| ferredoxin 2 [Parabacteroides sp. D13]
 gi|256738933|gb|EEU52258.1| ferredoxin 2 [Parabacteroides sp. D13]
          Length = 459

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + CI C  T C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15 DRCIGC--THCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D CI C  C  ECP  AI+
Sbjct: 10 LKIDNDRCIGCTHCMKECPTGAIR 33


>gi|150007737|ref|YP_001302480.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|301310227|ref|ZP_07216166.1| ferredoxin 2 [Bacteroides sp. 20_3]
 gi|149936161|gb|ABR42858.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|300831801|gb|EFK62432.1| ferredoxin 2 [Bacteroides sp. 20_3]
          Length = 459

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + CI C  T C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15 DRCIGC--THCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D CI C  C  ECP  AI+
Sbjct: 10 LKIDNDRCIGCTHCMKECPTGAIR 33


>gi|262381755|ref|ZP_06074893.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
 gi|262296932|gb|EEY84862.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
          Length = 459

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + CI C  T C++ CP       +    IH D C+DCG C   CP +AI  + +    ++
Sbjct: 15 DRCIGC--THCMKECPTGAIRIRDGKALIHKDWCVDCGECLKSCPTEAIYVEQDDFQRIF 72



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D CI C  C  ECP  AI+
Sbjct: 10 LKIDNDRCIGCTHCMKECPTGAIR 33


>gi|94968068|ref|YP_590116.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
          versatilis Ellin345]
 gi|94550118|gb|ABF40042.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
          Koribacter versatilis Ellin345]
          Length = 84

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPV 52
          M +V+ + C   K   C++ CP +  +        E  + L I+P+EC+DCG C   CP 
Sbjct: 1  MAHVIVDTC--EKDMLCIDSCPSNAIHPLKEETEWEAASQLYINPEECMDCGACISTCPT 58

Query: 53 DAIK--PDTEPGLELWLKINSEYA 74
          ++I    +       ++  N+ Y 
Sbjct: 59 NSIYLAEEVPADKAEFVAKNAAYY 82


>gi|325288816|ref|YP_004264997.1| ferridoxin [Syntrophobotulus glycolicus DSM 8271]
 gi|324964217|gb|ADY54996.1| ferridoxin [Syntrophobotulus glycolicus DSM 8271]
          Length = 56

 Score = 67.9 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T++CI C    CV+ CP +   EG++   I  D C DCGVC   C  +AI
Sbjct: 1  MAYVITDDCISCG--ACVDECPANAISEGDSKYVIDADSCADCGVCVDACAANAI 53


>gi|160934887|ref|ZP_02082273.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
 gi|156866340|gb|EDO59712.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
          Length = 56

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +++ CI C    C   CPV+   EG+    I  D CIDCG C   CPV A + +
Sbjct: 1  MAYKISDECISCG--ACEAGCPVNAISEGDGKYVIDADTCIDCGACADACPVGAPQAE 56


>gi|157963947|ref|YP_001503981.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848947|gb|ABV89446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 195

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY  E+ + +H  + CI CG C   CP  A         
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKETCIGCGYCFYACPFGAP-------- 104

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAA 91
             + + N+  +    +  T     P   
Sbjct: 105 -QFPQKNAFGSRGKMDKCTFCAGGPEPD 131


>gi|78043298|ref|YP_360068.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995413|gb|ABB14312.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 893

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 4   VVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E C  C    CV VCP  V     G+N   I P  C  CG+C  ECP  AI  +  P
Sbjct: 820 VIEEKCAACL--TCVRVCPYSVPVVINGKNVAYIDPISCQGCGICASECPNKAIVQNNRP 877

Query: 62  GLELWLKI 69
              +  +I
Sbjct: 878 HHGVLAEI 885


>gi|317060630|ref|ZP_07925115.1| hydrogenase [Fusobacterium sp. D12]
 gi|313686306|gb|EFS23141.1| hydrogenase [Fusobacterium sp. D12]
          Length = 599

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C          +    C  CG C   CPV AI    
Sbjct: 166 FKITEKCIGC--TACARVCPVKCIAGAPKKRHFLDTSRCTHCGQCVSACPVGAIFEGD 221



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           T  C  C    CV  CPV   +EG++ L +  D
Sbjct: 199 TSRCTHCGQ--CVSACPVGAIFEGDHTLKLLKD 229


>gi|302392756|ref|YP_003828576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
 gi|302204833|gb|ADL13511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
          Length = 55

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + + C+ C    CVE CPVD   EG++   I  DEC++CG C   CPV+AI+ 
Sbjct: 1  MAYTINDECVDCG--TCVEECPVDAIIEGDDHFEIDEDECVECGNCLDACPVEAIEE 55



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                DEC+DCG C  ECPVDAI    + 
Sbjct: 1  MAYTINDECVDCGTCVEECPVDAIIEGDDH 30


>gi|187934556|ref|YP_001884438.1| hypothetical protein CLL_A0202 [Clostridium botulinum B str.
          Eklund 17B]
 gi|188590020|ref|YP_001919636.1| hypothetical protein CLH_0200 [Clostridium botulinum E3 str.
          Alaska E43]
 gi|251778001|ref|ZP_04820921.1| ferredoxin, 4Fe-4S [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|187722709|gb|ACD23930.1| ferredoxin, 4Fe-4S [Clostridium botulinum B str. Eklund 17B]
 gi|188500301|gb|ACD53437.1| ferredoxin, 4Fe-4S [Clostridium botulinum E3 str. Alaska E43]
 gi|243082316|gb|EES48206.1| ferredoxin, 4Fe-4S [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 56

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++C+ C    C   CPVD   +G+ +  I  D CIDCG C   CPV A   +
Sbjct: 1  MAFVINDSCVSCG--ACAGECPVDAISQGDAYYVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|167768244|ref|ZP_02440297.1| hypothetical protein CLOSS21_02800 [Clostridium sp. SS2/1]
 gi|317497791|ref|ZP_07956103.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167709768|gb|EDS20347.1| hypothetical protein CLOSS21_02800 [Clostridium sp. SS2/1]
 gi|291560258|emb|CBL39058.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [butyrate-producing bacterium
          SSC/2]
 gi|316894904|gb|EFV17074.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 56

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ CI C    C   CP     EG+    I  D C++CG C   CP  AI  +
Sbjct: 1  MAYVISDACISCG--ACEGTCPAGAISEGDGQYVIDADTCMECGACADGCPAGAISQE 56


>gi|310659593|ref|YP_003937314.1| ferredoxin [Clostridium sticklandii DSM 519]
 gi|322510027|sp|P80168|FER_CLOSD RecName: Full=Ferredoxin
 gi|308826371|emb|CBH22409.1| Ferredoxin [Clostridium sticklandii]
          Length = 56

 Score = 67.5 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV+    G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVINDSCISCG--ACEPECPVNAITAGDDKYVIDAATCIDCGACAGVCPVDAPQPE 56



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  D CI CG CEPECPV+AI    +
Sbjct: 1  MAYVINDSCISCGACEPECPVNAITAGDD 29


>gi|319764052|ref|YP_004127989.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|330823673|ref|YP_004386976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|317118613|gb|ADV01102.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Alicycliphilus denitrificans BC]
 gi|329309045|gb|AEB83460.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 206

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C+ VCPV+CFY  E  + +H  D CI CG C   CP  A +   +
Sbjct: 51  ISVACMHCSDAPCMAVCPVNCFYRTEEGIVLHDKDVCIGCGYCSYACPFGAPQFPAQ 107


>gi|228471147|ref|ZP_04055966.1| conserved domain protein [Porphyromonas uenonis 60-3]
 gi|228307087|gb|EEK16161.1| conserved domain protein [Porphyromonas uenonis 60-3]
          Length = 54

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M +V+T++C+ C    C++ CPV    EG +  +I  D CIDCG C   CP  AI+
Sbjct: 1  MAHVITDSCVACG--TCIDECPVGAISEG-DIYSIDADTCIDCGACAAACPSGAIE 53


>gi|147918998|ref|YP_687275.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110622671|emb|CAJ37949.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 370

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    C  VCP    +  ++   +  + CI CG C   CPV +I  + E  +  +++
Sbjct: 196 CVGCG--RCAAVCPRIAVHMEQDIAVVDDEVCIGCGECMTVCPVGSISFNWEKDIVPFME 253

Query: 69  INSEYA 74
           + +EYA
Sbjct: 254 MMTEYA 259


>gi|169830611|ref|YP_001716593.1| hydrogenase large subunit [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637455|gb|ACA58961.1| hydrogenase large subunit domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 485

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C   CP       +N   I  D C++CG+C   CP  AI   + P
Sbjct: 94  YFVTDACQNCVAHSCRNSCPKKAISVLQNRAYIDNDSCVECGICAKNCPYYAIVEISRP 152



 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
            Y+  ++C+ C    C + CP     E                       I  D+C+ CG
Sbjct: 124 AYIDNDSCVECG--ICAKNCPYYAIVEISRPCERSCDMGAIKVDECRRAVIDLDKCVSCG 181

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 182 MCVAVCPFGAI 192


>gi|119717157|ref|YP_924122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119537818|gb|ABL82435.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 505

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV++CP    ++ E+ +     + CI C  C   CP DAI  D E
Sbjct: 57  CNHCTDAPCVKICPTQALFKREDGIVDFDNERCIGCKSCMQACPYDAIYIDAE 109



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 23/63 (36%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPV 52
           E CI CK   C++ CP D          I  +     +C  C           C   CP 
Sbjct: 87  ERCIGCK--SCMQACPYDAI-------YIDAETHTAAKCNMCAHRVDEGLEPACVVVCPT 137

Query: 53  DAI 55
            +I
Sbjct: 138 HSI 140


>gi|194332908|ref|YP_002014768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194310726|gb|ACF45121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 515

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C+   CV +CPV+   + E+ +       CI C  C   CP  A+  D E
Sbjct: 51  YFTVLRCNHCEDPPCVNICPVEALQKREDGIVDFDKRRCIGCKACGQACPYGALYIDPE 109


>gi|160878251|ref|YP_001557219.1| ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
 gi|160426917|gb|ABX40480.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
          Length = 484

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+NC  C    C + C         +   I P +C +CG+C   CP +AI     P
Sbjct: 95  FLVTDNCQKCMGKRCQKACNFQAISMSHDRAHIDPAKCKECGMCASACPYNAIADLKRP 153



 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 15  TDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
             C + CPVD     EN  + I  ++CI+CG C   CP  AI  
Sbjct: 152 RPCKKSCPVDAISMDENNIVVIDEEKCINCGQCINNCPFGAISD 195


>gi|325295518|ref|YP_004282032.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065966|gb|ADY73973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 215

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCPV     G+N++ ++ ++CIDC +C   CP  AI+P+ +
Sbjct: 59  CRQCDDAPCANVCPVGALRFGKNYIEVYEEKCIDCKMCVMVCPFGAIRPEEK 110


>gi|317125936|ref|YP_004100048.1| polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
 gi|315590024|gb|ADU49321.1| Polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
          Length = 508

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV++CP    ++ ++ +     D CI C  C   CP DAI  D
Sbjct: 57  CNHCTDAPCVKICPTQALFKRDDGIVDFDGDRCIGCKSCMQACPYDAIYID 107


>gi|254459827|ref|ZP_05073243.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676416|gb|EDZ40903.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 648

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +C++VCP          ++I P  C  CG C   CP  AI  D  P   ++ ++N
Sbjct: 278 NCLDVCPTGAITPAGEHVSIDPMICAGCGSCSAVCPSGAISSDAPPVDAIFSRLN 332



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI--KPDT 59
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI  KP  
Sbjct: 495 VDTDACTLCL--SCVSLCPSGALGDNSDLPQLRFQEDACLQCGLCSNICPEKAITLKPQV 552

Query: 60  EPGLELWLK--INSE 72
           +     + +  +N E
Sbjct: 553 DLTDNAFNQRVLNEE 567


>gi|300853352|ref|YP_003778336.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300433467|gb|ADK13234.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 57

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +TE+C+ C    C   CP D   +G++   I P++CI+CG C   CPV A   ++
Sbjct: 1  MAYKITEDCVSCG--SCASECPADAISQGDSQFVIDPEKCIECGNCANVCPVGAPVEES 57


>gi|239618161|ref|YP_002941483.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
 gi|239506992|gb|ACR80479.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
          Length = 478

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +Y +T+ C  C    C+  CP +     +    I  ++C+ CG+C   CP  AI
Sbjct: 117 SYHITDMCRNCSAKYCINSCPRNAIPIVDGKPKIDSEKCVGCGLCAKNCPYGAI 170



 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 15/73 (20%)

Query: 6   TENCILCK--------------HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPEC 50
           +E C+ C                  CV  C V   Y  EN    I  ++C+ CG C   C
Sbjct: 152 SEKCVGCGLCAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAVAC 211

Query: 51  PVDAIKPDTEPGL 63
           P  AI   +  G 
Sbjct: 212 PFGAIVESSSIGQ 224


>gi|210620595|ref|ZP_03292143.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
 gi|210155309|gb|EEA86315.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
          Length = 211

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ CI C    C+EVCP +C  E +   N + I+   C+ CG C   CPV+AI
Sbjct: 154 YFVTDKCINCG--RCIEVCPQNCIVEDQKNWNQVKINHLNCLSCGNCVEVCPVEAI 207



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELW--LKIN 70
           D+CI+CG C   CP + I  D     + W  +KIN
Sbjct: 158 DKCINCGRCIEVCPQNCIVED----QKNWNQVKIN 188


>gi|84514365|ref|ZP_01001729.1| formate dehydrogenase iron-sulfur subunit [Loktanella vestfoldensis
           SKA53]
 gi|84511416|gb|EAQ07869.1| formate dehydrogenase iron-sulfur subunit [Loktanella vestfoldensis
           SKA53]
          Length = 198

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCASVCPVDCFYTTDDAVVLHNKDTCIGCGYCSYACPFGAPQY 104


>gi|325479615|gb|EGC82707.1| 4Fe-4S binding domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 509

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            VT+ C  C    CV VCP +          I  D+CI CG C   CP +AI     P  
Sbjct: 114 TVTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVSACPYNAINHQKRPCA 173

Query: 64  E 64
           E
Sbjct: 174 E 174



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCGVCEPE 49
           + CI C    CV  CP +     +   A                 I+ D+C+ CG C   
Sbjct: 148 DKCIKCG--KCVSACPYNAINHQKRPCAESCGVKAISSDELGRADINEDKCVACGRCIIT 205

Query: 50  CPVDAIKPDTE 60
           CP  AI   +E
Sbjct: 206 CPFGAISDKSE 216


>gi|320104680|ref|YP_004180271.1| cyclic nucleotide-binding protein [Isosphaera pallida ATCC 43644]
 gi|319751962|gb|ADV63722.1| cyclic nucleotide-binding protein [Isosphaera pallida ATCC 43644]
          Length = 790

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP-DTE 60
           ++V  +C  C    C+  CPVD        L I   D CI CG C   CP   I   + E
Sbjct: 647 FLVASSCRSCLDPTCLPACPVDAINRNGKSLEIRIKDHCIGCGKCAENCPYGNINMVELE 706

Query: 61  PGLEL 65
           P    
Sbjct: 707 PPRRK 711


>gi|153854059|ref|ZP_01995392.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
 gi|149753441|gb|EDM63372.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
          Length = 56

 Score = 67.5 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+ + C+ C    C   CPV    +G +   I  D C+DCG C  +CPV AI
Sbjct: 1  MAHVIGDECVSCG--SCEAECPVGAIAQGADHYEIDADACVDCGACAAQCPVGAI 53


>gi|210613377|ref|ZP_03289697.1| hypothetical protein CLONEX_01904 [Clostridium nexile DSM 1787]
 gi|210151219|gb|EEA82227.1| hypothetical protein CLONEX_01904 [Clostridium nexile DSM 1787]
          Length = 56

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I  D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSCG--ACEAECPVGAISQGADHYEIDKDACVDCGACAAQCPTGAISAE 56


>gi|182420065|ref|ZP_02951299.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237666800|ref|ZP_04526785.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376102|gb|EDT73689.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237657999|gb|EEP55554.1| ferredoxin, 4Fe-4S [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 56

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  MAFVINDSCVSCG--ACAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|260430249|ref|ZP_05784223.1| formate dehydrogenase iron-sulfur subunit [Citreicella sp. SE45]
 gi|260418721|gb|EEX11977.1| formate dehydrogenase iron-sulfur subunit [Citreicella sp. SE45]
          Length = 197

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ +  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTDEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|325663172|ref|ZP_08151622.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086762|ref|ZP_08335839.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325470626|gb|EGC73856.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330409928|gb|EGG89363.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 56

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I+ D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSCG--ACEAECPVGAISQGADHYEINADACVDCGACAAQCPTGAISAE 56


>gi|291548248|emb|CBL21356.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus sp. SR1/5]
          Length = 56

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C   CP +   +G+    I  D C+DCG C   CPV AI  +
Sbjct: 1  MAYVISDECVSCG--TCEGECPNEAISQGDEHYVIDADACVDCGTCAEACPVGAISAE 56



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  DEC+ CG CE ECP +AI    E 
Sbjct: 1  MAYVISDECVSCGTCEGECPNEAISQGDEH 30


>gi|146295776|ref|YP_001179547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409352|gb|ABP66356.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 57

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   GE    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCG--ACESECPVQCISPGEGKYVINEEECISCGACANVCPVDAPKP 55


>gi|167760379|ref|ZP_02432506.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
 gi|167662052|gb|EDS06182.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
          Length = 382

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  ENCI C   +C+ VC  D     +    I  D+C+ CG C   CP DA+ P  + 
Sbjct: 204 PYVEVENCIGCG--NCIRVCAHDAPKITDRKAFIDHDKCVGCGRCIGVCPKDAVCPPNDE 261

Query: 62  GLELWLKINSEYA 74
             ++  K  +EY+
Sbjct: 262 SNDILNKKIAEYS 274


>gi|168702048|ref|ZP_02734325.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 917

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++V  +C  C+   C+E CPVD  +  G +   +  + CI CG+CE  CP  AI 
Sbjct: 796 FLVATSCRSCQKPYCMEGCPVDAIHRRGAHLEVVIENHCIGCGLCERNCPYGAIH 850



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 12/85 (14%)

Query: 7   ENCILCKHT--DCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDA 54
           + CI+C      C EV P                      +    C+ CG C   CP  A
Sbjct: 302 DRCIVCDRCVRACSEVKPFKVIGHTGKGYGTRISFDLDSVMRDSTCVQCGECMNSCPTGA 361

Query: 55  IKPDTEPGLELWLKINSEYATQWPN 79
           +          W   + E     PN
Sbjct: 362 LSLRRRVRPRAWGDDSPEQVPVNPN 386


>gi|15893595|ref|NP_346944.1| ferredoxin [Clostridium acetobutylicum ATCC 824]
 gi|15023146|gb|AAK78284.1|AE007545_1 Ferredoxin [Clostridium acetobutylicum ATCC 824]
 gi|325507715|gb|ADZ19351.1| Ferredoxin [Clostridium acetobutylicum EA 2018]
          Length = 56

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV    +G+    I  D CI+CG C   CPV A   +
Sbjct: 1  MAYKITDACVSCG--SCASECPVSAISQGDTQFVIDADTCIECGNCANVCPVGAPVQE 56


>gi|306820590|ref|ZP_07454220.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551371|gb|EFM39332.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 56

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ +NCI C    C   CPV    +G+    I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIHDNCISCG--ACEPECPVGAISQGDTQYIIDASACIDCGACASVCPVDAPQPE 56


>gi|221194389|ref|ZP_03567446.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
 gi|221185293|gb|EEE17683.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
          Length = 532

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + V+  C  C    C E+CP       +    I  ++CI CG+CE  CP  AI     P 
Sbjct: 123 FRVSNACQGCLAHPCREICPKGAISFVDKKAFIDQEKCIKCGMCEKVCPYHAILHHLRPC 182

Query: 63  LE 64
            E
Sbjct: 183 AE 184



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 20/86 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDE----------CIDCG 44
            ++  E CI C    C +VCP            E     AI  DE          C+ CG
Sbjct: 153 AFIDQEKCIKCG--MCEKVCPYHAILHHLRPCAEACGMHAIGSDEHGRADIDYEKCVSCG 210

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN 70
            C   CP  AI  D     ++   IN
Sbjct: 211 QCLVNCPFGAI-ADKSQIFQVITAIN 235


>gi|307266103|ref|ZP_07547648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918885|gb|EFN49114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 372

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V + C  C    C+  CPV+          I P  CI CG C   C    IKP     +
Sbjct: 190 IVGKGCTAC--QMCIRNCPVNAISLVNGSAYIDPSICIGCGECVSICQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFVERMTEYA 258


>gi|300857164|ref|YP_003782148.1| putative electron transfer flavoprotein subunit alpha
          [Clostridium ljungdahlii DSM 13528]
 gi|300437279|gb|ADK17046.1| predicted electron transfer flavoprotein alpha subunit
          [Clostridium ljungdahlii DSM 13528]
          Length = 429

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  ++T++CI C+   C+ +CP D     GE  L    ++C +CG C   CPV A
Sbjct: 1  MAVIITDSCIGCE--SCIPICPFDALGINGEGKLVASKEKCTECGKCVSVCPVSA 53


>gi|187250889|ref|YP_001875371.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
 gi|186971049|gb|ACC98034.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
          Length = 478

 Score = 67.1 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y+VTE C  C    C+  CP +          I P +C +CG C+  CP  AI       
Sbjct: 113 YMVTEVCQGCVARQCIYDCPFNAISMQNGRAYIEPAKCKNCGKCKSACPYGAI------- 165

Query: 63  LELWLKINSEYATQWPNITTKKE 85
               LK+N       P    KK+
Sbjct: 166 ----LKLNVPCEEACPVNAIKKD 184



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 8   NCILCKHT-----------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           NC  CK              C E CPV+   + +     I    CI CG C   CP  AI
Sbjct: 152 NCGKCKSACPYGAILKLNVPCEEACPVNAIKKDQKGRAIIDHSMCISCGRCMKVCPFGAI 211


>gi|92114039|ref|YP_573967.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797129|gb|ABE59268.1| formate dehydrogenase beta subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 216

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY+ ++ + +H  D CI CG C   CP  A +   E   
Sbjct: 51  ISVACMHCDDAPCMAVCPTDCFYKTDDGIVLHDKDICIGCGYCLYACPFGAPQFPKEEAF 110

Query: 64  ELWLKIN 70
               K++
Sbjct: 111 GERGKMD 117


>gi|319779238|ref|YP_004130151.1| Ferredoxin [Taylorella equigenitalis MCE9]
 gi|317109262|gb|ADU92008.1| Ferredoxin [Taylorella equigenitalis MCE9]
          Length = 62

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 47  EPECPVDAIK--PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYF 104
            PECP +AI    D     + +++IN+E    +  I+   + LP A + +G   K E   
Sbjct: 1   MPECPANAIFAEEDLPKDQQQFIQINAELTPLFEPISRSIDPLPDADEWNGKPNKLEYLI 60

Query: 105 SP 106
            P
Sbjct: 61  KP 62


>gi|226323506|ref|ZP_03799024.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
 gi|225208190|gb|EEG90544.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
          Length = 56

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV     G + + I    C+DCG CE  CP  AI  +
Sbjct: 1  MAHVISDECVSCG--ACESECPVGAISMGADHMQIDASACVDCGACESACPTGAISAE 56


>gi|119094142|gb|ABL60972.1| anaerobic dehydrogenase iron-sulfur subunit [uncultured marine
           bacterium HF10_19P19]
          Length = 197

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPVDCFY+ +  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCTAVCPVDCFYQTDQGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|119899770|ref|YP_934983.1| formate dehydrogenase iron-sulfur subunit [Azoarcus sp. BH72]
 gi|119672183|emb|CAL96097.1| probable formate dehydrogenase iron-sulfur subunit [Azoarcus sp.
           BH72]
          Length = 202

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY+ E  + +H  D CI CG C   CP  A +    P  
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYKAEGGVVLHDKDLCIGCGYCFFACPFGAPQFPNGPA- 109

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                  +  A    +  T     P   +  G K+++EKY
Sbjct: 110 -------AFGARGKMDKCTFCAGGP---EETGSKEEFEKY 139


>gi|150015010|ref|YP_001307264.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Clostridium beijerinckii NCIMB 8052]
 gi|149901475|gb|ABR32308.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium beijerinckii NCIMB 8052]
          Length = 56

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  MAFVINDSCVSCG--ACAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGAPNQE 56


>gi|302340131|ref|YP_003805337.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637316|gb|ADK82743.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 447

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +V   CI C  T C+  CP +          + P+ C+DCG C   CPVDAI  + +   
Sbjct: 12 IVEAKCIGC--THCMLTCPTEAIRVFGGKAHVDPNRCVDCGNCMSVCPVDAIVIEQDDFD 69

Query: 64 ELWL 67
          +++ 
Sbjct: 70 QIYT 73


>gi|212705024|ref|ZP_03313152.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
 gi|212671576|gb|EEB32059.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
          Length = 480

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+ C  C    C+  C             I P++C +CG+C   CP  AI
Sbjct: 116 YYVTDACQGCVARSCIGSCRFGAISFSRGRSTIDPEKCRNCGMCMDACPYHAI 168



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 12/65 (18%)

Query: 8   NCILCKHT-----------DCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           NC +C               C   CPV   ++G      I  ++C  CG C   CP  A+
Sbjct: 155 NCGMCMDACPYHAIVRLNVPCEAACPVRAIHKGNKGRAEIDFEKCTSCGRCMRACPFGAV 214

Query: 56  KPDTE 60
              +E
Sbjct: 215 MERSE 219


>gi|302384752|ref|YP_003820574.1| ferredoxin [Clostridium saccharolyticum WM1]
 gi|302195380|gb|ADL02951.1| ferredoxin [Clostridium saccharolyticum WM1]
          Length = 56

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+++ C+ C    C   CPV    +G++   I  D CIDCG CE  CP  AI
Sbjct: 1  MARVISDACVSCG--SCEAECPVSAISQGDSQFVIDADTCIDCGACEGVCPTGAI 53


>gi|126176322|ref|YP_001052471.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|153002606|ref|YP_001368287.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160877327|ref|YP_001556643.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|304412797|ref|ZP_07394399.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307461|ref|ZP_07587196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|125999527|gb|ABN63602.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
 gi|151367224|gb|ABS10224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160862849|gb|ABX51383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|304348877|gb|EFM13293.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910249|gb|EFN40682.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|315269532|gb|ADT96385.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 198

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|114567614|ref|YP_754768.1| ferredoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338549|gb|ABI69397.1| ferredoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 58

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M+Y++T+ CI C    CV+ CPV+   EGE+   I P+ C +CG C   CPV+A  P  +
Sbjct: 1  MSYIITDECISCG--ICVDECPVEAISEGEDKFEIDPELCTECGSCADVCPVEAPIPADD 58


>gi|315187269|gb|EFU21025.1| ferredoxin [Spirochaeta thermophila DSM 6578]
          Length = 56

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+T++C+ C    C+  CPV+   EG N   I PD+C DCG C   CP +AI P
Sbjct: 1  MAYVITDDCVACG--TCLPECPVEAISEG-NPYVIDPDKCTDCGSCAEVCPAEAIHP 54


>gi|110680099|ref|YP_683106.1| formate dehydrogenase Fe-S subunit [Roseobacter denitrificans OCh
           114]
 gi|163731481|ref|ZP_02138928.1| formate dehydrogenase Fe-S subunit [Roseobacter litoralis Och 149]
 gi|109456215|gb|ABG32420.1| formate dehydrogenase Fe-S subunit [Roseobacter denitrificans OCh
           114]
 gi|161394935|gb|EDQ19257.1| formate dehydrogenase Fe-S subunit [Roseobacter litoralis Och 149]
          Length = 198

 Score = 67.1 bits (163), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 52  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQF 105


>gi|312128363|ref|YP_003993237.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
 gi|312134414|ref|YP_004001752.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|311774465|gb|ADQ03952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor owensensis OL]
 gi|311778382|gb|ADQ07868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor hydrothermalis 108]
          Length = 57

 Score = 67.1 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCG--ACESECPVQCISPGDGKYVINEEECISCGACANVCPVDAPKP 55



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
                D+CI CG CE ECPV  I P  
Sbjct: 1  MAYYITDDCISCGACESECPVQCISPGD 28


>gi|310658522|ref|YP_003936243.1| iron-sulfur protein [Clostridium sticklandii DSM 519]
 gi|308825300|emb|CBH21338.1| putative iron-sulfur protein [Clostridium sticklandii]
          Length = 418

 Score = 67.1 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 7/68 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +NCI CK   CV VCPV CF    +  ++ + ++ + C+ CGVC+  C ++AI+  ++  
Sbjct: 288 DNCISCK--KCVSVCPVGCFEIKVFNDKDKVVLNSELCLGCGVCQRVCSINAIEM-SKRD 344

Query: 63  LELWLKIN 70
           ++++  +N
Sbjct: 345 VKIFTPVN 352


>gi|126732914|ref|ZP_01748704.1| formate dehydrogenase, iron-sulfur subunit, putative [Sagittula
           stellata E-37]
 gi|126706620|gb|EBA05695.1| formate dehydrogenase, iron-sulfur subunit, putative [Sagittula
           stellata E-37]
          Length = 197

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|89092832|ref|ZP_01165784.1| formate dehydrogenase, iron-sulfur subunit [Oceanospirillum sp.
           MED92]
 gi|89082857|gb|EAR62077.1| formate dehydrogenase, iron-sulfur subunit [Oceanospirillum sp.
           MED92]
          Length = 201

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY+ ++ + +H  D CI CG C   CP  A +  ++   
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYQTDDGIVLHNKDLCIGCGYCLYACPFGAPQFPSDAAF 110

Query: 64  ELWLKIN 70
               K++
Sbjct: 111 GERGKMD 117


>gi|254474808|ref|ZP_05088194.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214029051|gb|EEB69886.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 197

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|255282942|ref|ZP_05347497.1| conserved domain protein [Bryantella formatexigens DSM 14469]
 gi|255266481|gb|EET59686.1| conserved domain protein [Bryantella formatexigens DSM 14469]
          Length = 56

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+++ C+ C    C + CP     EG+    I  D C++CG CE ECP  AI  +
Sbjct: 1  MAYVISDECVSCG--TCADACPAGAISEGDGKYVIDADACLECGTCESECPTGAISAE 56


>gi|329898162|ref|ZP_08272360.1| Ferredoxin [gamma proteobacterium IMCC3088]
 gi|328920884|gb|EGG28320.1| Ferredoxin [gamma proteobacterium IMCC3088]
          Length = 56

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 52  VDAIKPDTE--PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +DAI  + E      ++L++N+E A  WPNI+  KE+   A +  G   K +
Sbjct: 1   MDAIFSEDELPEDQAVFLELNAELAEVWPNISEMKEAPADAEEWTGKPNKLQ 52


>gi|291548594|emb|CBL24856.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus torques L2-14]
          Length = 56

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+++ C+ C    C   CPV    EG+    I  D C+DCG CE  CP  AI
Sbjct: 1  MAHVISDECVSCG--TCEGECPVGAISEGDGKYEIDADACVDCGACEAACPTGAI 53


>gi|114561246|ref|YP_748759.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332539|gb|ABI69921.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 198

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|222528526|ref|YP_002572408.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|312623185|ref|YP_004024798.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|222455373|gb|ACM59635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|312203652|gb|ADQ46979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor kronotskyensis 2002]
          Length = 57

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCG--ACESECPVSCISPGDGKYVINEEECISCGACANVCPVDAPKP 55



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
                D+CI CG CE ECPV  I P  
Sbjct: 1  MAYYITDDCISCGACESECPVSCISPGD 28


>gi|163736978|ref|ZP_02144396.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis BS107]
 gi|163740599|ref|ZP_02147993.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161386457|gb|EDQ10832.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161389582|gb|EDQ13933.1| formate dehydrogenase, iron-sulfur subunit, putative [Phaeobacter
           gallaeciensis BS107]
          Length = 197

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|283796651|ref|ZP_06345804.1| conserved domain protein [Clostridium sp. M62/1]
 gi|291076074|gb|EFE13438.1| conserved domain protein [Clostridium sp. M62/1]
 gi|295092473|emb|CBK78580.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
          [Clostridium cf. saccharolyticum K10]
 gi|295115344|emb|CBL36191.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
          [butyrate-producing bacterium SM4/1]
          Length = 56

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+T+ C+ C    C   CPV    EG+    I    CIDCG C   CP  AI+ 
Sbjct: 1  MAYVITDTCVSCG--ACAGGCPVGAISEGDGKYEIDAAACIDCGACAGTCPTGAIEE 55


>gi|167622047|ref|YP_001672341.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352069|gb|ABZ74682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 195

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY  +  + +H  + CI CG C   CP  A         
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDEGIVLHNKETCIGCGYCLYACPFGAP-------- 104

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
             + + N+  +    +  T     P A      ++K 
Sbjct: 105 -QFPQKNAFGSRGKMDKCTFCAGGP-APDFSEEERKL 139


>gi|85704202|ref|ZP_01035305.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. 217]
 gi|149201547|ref|ZP_01878521.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|85671522|gb|EAQ26380.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
           sp. 217]
 gi|149144595|gb|EDM32624.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 198

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGIVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|312793989|ref|YP_004026912.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877607|ref|ZP_07737565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795617|gb|EFR11988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181129|gb|ADQ41299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 57

 Score = 66.7 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ +ECI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCG--ACESECPVQCISAGDGKYVINEEECISCGACANVCPVDAPKP 55


>gi|225028182|ref|ZP_03717374.1| hypothetical protein EUBHAL_02454 [Eubacterium hallii DSM 3353]
 gi|224954494|gb|EEG35703.1| hypothetical protein EUBHAL_02454 [Eubacterium hallii DSM 3353]
          Length = 56

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV++++CI C    C   CP     EG+    I  D C+DCG C   CP  AI  +
Sbjct: 1  MAYVISDDCISCG--TCEGECPAGAISEGDGKYEIDADTCMDCGSCAGACPAGAISQE 56


>gi|313205341|ref|YP_004043998.1| ferredoxin [Paludibacter propionicigenes WB4]
 gi|312444657|gb|ADQ81013.1| ferredoxin [Paludibacter propionicigenes WB4]
          Length = 56

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++E+CI C    C+  CPV+   EG +   I  D C DCG C   CP +AI P
Sbjct: 1  MAYVISEDCIACG--SCISECPVEAISEG-DIYVIDADVCTDCGTCADVCPSEAISP 54


>gi|159043060|ref|YP_001531854.1| formate dehydrogenase iron-sulfur subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157910820|gb|ABV92253.1| formate dehydrogenase iron-sulfur subunit [Dinoroseobacter shibae
           DFL 12]
          Length = 198

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTDDAVVLHSKDTCIGCGYCFYACPFGAPQY 104


>gi|262402832|ref|ZP_06079393.1| ferredoxin [Vibrio sp. RC586]
 gi|262351614|gb|EEZ00747.1| ferredoxin [Vibrio sp. RC586]
          Length = 46

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              +++++N+E A  WPN+T  K ++  AAK DGV  K    
Sbjct: 3   DQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLNML 44


>gi|262165101|ref|ZP_06032838.1| ferredoxin [Vibrio mimicus VM223]
 gi|262172136|ref|ZP_06039814.1| ferredoxin [Vibrio mimicus MB-451]
 gi|261893212|gb|EEY39198.1| ferredoxin [Vibrio mimicus MB-451]
 gi|262024817|gb|EEY43485.1| ferredoxin [Vibrio mimicus VM223]
          Length = 46

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
              +++++N+E A  WPN+T  K ++  AAK DGV  K +  
Sbjct: 3   DQRIFIELNAELAEHWPNLTEVKPAMEDAAKWDGVPNKLDML 44


>gi|256371808|ref|YP_003109632.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008392|gb|ACU53959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 512

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ VT  C  C +  CV  CP    Y+  + +   +   CI C  C   CP DAI  + E
Sbjct: 61  SFQVT-RCNQCTNPPCVAACPTGAMYQRPDGIVDFNKAICIGCKACMAACPYDAIFINPE 119

Query: 61  P 61
            
Sbjct: 120 D 120



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 23/61 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPVDA 54
           CI CK   C+  CP D  +       I+P+     +C  C           C   CP +A
Sbjct: 99  CIGCK--ACMAACPYDAIF-------INPEDHSAEKCNFCAHRLDIGLEPACVVVCPTEA 149

Query: 55  I 55
           I
Sbjct: 150 I 150


>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
 gi|164604201|gb|EDQ97666.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
          Length = 646

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +TE CI C    C  VCPVDC   E +    I  + C  CG C   CPVDAI
Sbjct: 220 TITEKCIGCG--ICQRVCPVDCIAGEKKEQRRIDYNRCTHCGRCLSACPVDAI 270



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           ++CI CG+C+  CPVD I  + +   +  +  N 
Sbjct: 223 EKCIGCGICQRVCPVDCIAGEKKE--QRRIDYNR 254


>gi|149915678|ref|ZP_01904204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           AzwK-3b]
 gi|149810570|gb|EDM70413.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           AzwK-3b]
          Length = 197

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|90418456|ref|ZP_01226368.1| formate dehydrogenase, iron-sulfur subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338128|gb|EAS51779.1| formate dehydrogenase, iron-sulfur subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 198

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|119990|sp|P00195|FER_CLOPA RecName: Full=Ferredoxin
 gi|144806|gb|AAA83524.1| ferredoxin [Clostridium pasteurianum]
 gi|208373|gb|AAA73179.1| ferredoxin [synthetic construct]
          Length = 56

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A   +
Sbjct: 1  MAYKIADSCVSCG--ACASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|113972048|ref|YP_735841.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|114049278|ref|YP_739828.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117922349|ref|YP_871541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113886732|gb|ABI40784.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
 gi|113890720|gb|ABI44771.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117614681|gb|ABK50135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 198

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|310779216|ref|YP_003967549.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748539|gb|ADO83201.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 480

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y  T+ C  C   +C  VCP D     +    I P++CI CG+C   C   AI     P
Sbjct: 119 YYATDLCRNCIAHNCTNVCPRDAIVFDDGRAKIIPEKCIGCGLCAKSCDYYAIVKLERP 177



 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 15/72 (20%)

Query: 4   VVTENCILCK--------------HTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEP 48
           ++ E CI C                  C   C ++   + EN  A I+ D+C+ CG C  
Sbjct: 151 IIPEKCIGCGLCAKSCDYYAIVKLERPCERACTLNAITKDENGAADINKDKCVACGACHV 210

Query: 49  ECPVDAIKPDTE 60
            CP  AI+  T+
Sbjct: 211 ACPFGAIESPTQ 222


>gi|260437855|ref|ZP_05791671.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809880|gb|EFF69085.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 56

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C   CP      G++   I  D C+ CG CE  CPV AI
Sbjct: 1  MAYVISDSCVSCG--SCAGGCPAGAISLGDSHYEIDADTCLSCGACESACPVGAI 53


>gi|288957573|ref|YP_003447914.1| formate dehydrogenase iron-sulfur subunit [Azospirillum sp. B510]
 gi|288909881|dbj|BAI71370.1| formate dehydrogenase iron-sulfur subunit [Azospirillum sp. B510]
          Length = 225

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            ++  C+ C    C  VCPVDCFY+    + +H  D CI CG C   CP  A + 
Sbjct: 50  TISVACMHCSDAPCKAVCPVDCFYQTAEGVVLHNKDLCIGCGYCFYACPFGAPQY 104


>gi|51894235|ref|YP_076926.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857924|dbj|BAD42082.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
          Length = 291

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV  CP D    G+  L  ++ D CI CG CE  CP D I  D
Sbjct: 91  SCMHCTDAGCVTACPTDALQYGDYGLVTLNQDACIGCGYCEAACPFDCIHVD 142


>gi|296137382|ref|YP_003644624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|294341676|emb|CAZ90095.1| formate dehydrogenase iron-sulfur subunit [Thiomonas sp. 3As]
 gi|295797504|gb|ADG32294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 210

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCPV CFY     + +H  D CI CG C   CP  A +       
Sbjct: 51  ISVACMHCSDAPCMAVCPVSCFYRTPEGVVLHDKDVCIGCGYCSYACPFGAPQFPANGEF 110

Query: 64  ELWLKIN 70
            L  K++
Sbjct: 111 GLRGKMD 117


>gi|126739787|ref|ZP_01755478.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. SK209-2-6]
 gi|126719019|gb|EBA15730.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. SK209-2-6]
          Length = 197

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|256004045|ref|ZP_05429030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 2360]
 gi|281419118|ref|ZP_06250135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum JW20]
 gi|255991968|gb|EEU02065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 2360]
 gi|281407267|gb|EFB37528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum JW20]
 gi|316941711|gb|ADU75745.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          thermocellum DSM 1313]
          Length = 56

 Score = 66.7 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T+ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA + 
Sbjct: 1  MAYFITDACISCG--ACESECPVSCISPGDSVYVIDADACIECGACANVCPVDAPQQ 55



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 13/28 (46%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
                D CI CG CE ECPV  I P  
Sbjct: 1  MAYFITDACISCGACESECPVSCISPGD 28


>gi|260434033|ref|ZP_05788004.1| formate dehydrogenase iron-sulfur subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417861|gb|EEX11120.1| formate dehydrogenase iron-sulfur subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 197

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|253581030|ref|ZP_04858291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847693|gb|EES75662.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 57

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+++ C+ C    C   CP +   +G+    I  D C+DCG C   CP +AI P
Sbjct: 1  MAYVISDECVSCG--TCESECPAEAISQGDEHYVIDADACLDCGTCADACPTEAIHP 55



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  DEC+ CG CE ECP +AI    E 
Sbjct: 1  MAYVISDECVSCGTCESECPAEAISQGDEH 30


>gi|239625212|ref|ZP_04668243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519442|gb|EEQ59308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 507

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VVT+ C  C    CVEVCP D            I  D CI CG C   C  +AI     P
Sbjct: 116 VVTDGCQGCLAHPCVEVCPKDAVSIDRSNGRSHIDQDRCIRCGRCADVCSYNAIIIQERP 175



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
           +++  + CI C                  C   C +DC +  EN  A I  D+C+ CG+C
Sbjct: 147 SHIDQDRCIRCGRCADVCSYNAIIIQERPCAAACGMDCIHSDENGKADIDYDKCVSCGMC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|78222251|ref|YP_383998.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
          metallireducens GS-15]
 gi|78193506|gb|ABB31273.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
          metallireducens GS-15]
          Length = 74

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V++++C  C    CV+ CPV+      +   I  D CIDCG C   CP  AI
Sbjct: 20 AHVISDDCTNCG--SCVDSCPVNAIAPAGDKHKIDGDTCIDCGACVDTCPTSAI 71


>gi|302871132|ref|YP_003839768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor obsidiansis OB47]
 gi|302573991|gb|ADL41782.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldicellulosiruptor obsidiansis OB47]
          Length = 57

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T++CI C    C   CPV C   G+    I+ ++CI CG C   CPVDA KP
Sbjct: 1  MAYYITDDCISCG--ACESECPVQCISPGDGKYVINEEQCISCGACANVCPVDAPKP 55



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
                D+CI CG CE ECPV  I P  
Sbjct: 1  MAYYITDDCISCGACESECPVQCISPGD 28


>gi|24375987|ref|NP_720030.1| formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
 gi|24350986|gb|AAN57474.1|AE015883_5 formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
          Length = 198

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|120600656|ref|YP_965230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291443|ref|YP_001181867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560749|gb|ABM26676.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563133|gb|ABP74068.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428326|gb|ADV56400.1| formate dehydrogenase, FeS subunit, FdhB [Shewanella putrefaciens
           200]
          Length = 198

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTDDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|253581620|ref|ZP_04858845.1| hydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725]
          Length = 644

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C     +    +    C  CG C   CPV AI    
Sbjct: 217 FRITEKCIGC--TACARVCPVKCISGKIKERHILDTSRCTHCGQCVAACPVGAIFEGD 272



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           T  C  C    CV  CPV   +EG++ + +  D
Sbjct: 250 TSRCTHCGQ--CVAACPVGAIFEGDHTMKLLKD 280


>gi|219852666|ref|YP_002467098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219546925|gb|ACL17375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 368

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             VV + CI C    C+ VCP       E    I  D CI C  C   CP  AI  D E 
Sbjct: 188 PMVVRDLCIGC--QTCLPVCPQQAIGMDEGAALISKDRCIGCFECMTVCPERAIDVDWET 245

Query: 62  GLELWLKINSEYAT 75
            +  + +   EYA 
Sbjct: 246 DIPTFTERMVEYAA 259


>gi|197302881|ref|ZP_03167933.1| hypothetical protein RUMLAC_01610 [Ruminococcus lactaris ATCC
          29176]
 gi|197298118|gb|EDY32666.1| hypothetical protein RUMLAC_01610 [Ruminococcus lactaris ATCC
          29176]
          Length = 56

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+++ C+ C    C   CPV    EGE+   +  D CIDCG CE  CPV AI
Sbjct: 1  MARVISDECVKCG--TCEAECPVSAISEGEDTYVVDADSCIDCGACEAACPVGAI 53


>gi|51246231|ref|YP_066115.1| hydrogenase [Desulfotalea psychrophila LSv54]
 gi|50877268|emb|CAG37108.1| related to hydrogenase [Desulfotalea psychrophila LSv54]
          Length = 483

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C++ CP D     +    I  + CI+CG C   CP  AI
Sbjct: 113 YEVTNACQGCLAQACIQSCPKDAITMVQGKSHIDSNLCINCGKCLKVCPYHAI 165



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-----------------NFLAIHPDECIDCG 44
           +++ +  CI C    C++VCP     +                       I  D CI CG
Sbjct: 143 SHIDSNLCINCG--KCLKVCPYHAIVQIPIPCEVACPIGAISKDVSGRQVIDYDLCIFCG 200

Query: 45  VCEPECPVDAI 55
            C  +CP  A+
Sbjct: 201 KCMAQCPFAAV 211


>gi|317133605|ref|YP_004092919.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471584|gb|ADU28188.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 482

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C   CP       ++   I P++C +CG C   CP  AI     P
Sbjct: 90  FSVTDACRGCIAHKCHAACPFGAISYEKHRAVIDPEKCRECGRCMKACPYHAIIERQRP 148



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 11/51 (21%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC--GVCEPECPVDAIKPD 58
           +    + C + CPV  F           D C  C    C   CP  AI  +
Sbjct: 75  VSVIDSAC-DECPVQRFSVT--------DACRGCIAHKCHAACPFGAISYE 116


>gi|289450529|ref|YP_003475312.1| ferredoxin [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185076|gb|ADC91501.1| ferredoxin [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 56

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +++ CI C    C   CP      G+    I+P+ CIDCG CE  CPV AI  +
Sbjct: 1  MAYKISDMCISCG--TCEMECPTSSISAGDTQYIINPETCIDCGACEGACPVGAISAE 56


>gi|260888301|ref|ZP_05899564.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838372|ref|YP_004412952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
 gi|260861837|gb|EEX76337.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746136|gb|AEB99492.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
          Length = 56

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y ++E CI C    C   CPV+   EGE+   I  ++CI+CG C   CPV AI
Sbjct: 1  MAYKISEECISCG--SCAGTCPVEAISEGESQYVIDEEKCIECGACAEGCPVSAI 53


>gi|325972119|ref|YP_004248310.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
 gi|324027357|gb|ADY14116.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
          Length = 445

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD--AIKPDTE 60
          Y+V   C  C  T C++ CP       +    I  D CI+CG C   CP +  AI+ D+ 
Sbjct: 11 YIVESACKGC--THCMKRCPTQAIRIAKGKARIDNDLCIECGQCMAVCPNNAIAIEQDSL 68

Query: 61 PGLELWL 67
            LE + 
Sbjct: 69 SQLEAFT 75


>gi|254450340|ref|ZP_05063777.1| formate dehydrogenase Fe-S subunit [Octadecabacter antarcticus 238]
 gi|198264746|gb|EDY89016.1| formate dehydrogenase Fe-S subunit [Octadecabacter antarcticus 238]
          Length = 197

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPTDCFYQTADGVVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|90418569|ref|ZP_01226481.1| formate dehydrogenase, iron-sulfur binding subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338241|gb|EAS51892.1| formate dehydrogenase, iron-sulfur binding subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 198

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C  VCPVDCF+  E+ + +H  D CI CG C   CP  A         
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFFTTEDGVVLHSKDLCIGCGYCFYACPFGAP-------- 102

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
             + ++ +  +    +  T     P A   +    KY K
Sbjct: 103 -QYPRVGNFGSRGKMDKCTYCAGGPEADSSEAEYAKYGK 140


>gi|225574426|ref|ZP_03783036.1| hypothetical protein RUMHYD_02495 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038354|gb|EEG48600.1| hypothetical protein RUMHYD_02495 [Blautia hydrogenotrophica DSM
          10507]
          Length = 57

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+T+ C+ C    C   CP +   +GE+   I  D C+DCG C   CP +AI
Sbjct: 1  MAYVITDECVSCG--TCEAECPSEAISQGEDKYVIDADACVDCGTCADACPTEAI 53


>gi|302343580|ref|YP_003808109.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301640193|gb|ADK85515.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 1011

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            VV E C  C    CV  CP+   F   + +  I P++C+ CG+C  ECP  AI+      
Sbjct: 939  VVGEMCAACLV--CVRACPIGVPFINADGYSQIDPEKCLGCGICAAECPAKAIQLQGYDD 996

Query: 63   LELWLKINS 71
             ++  + ++
Sbjct: 997  DQIMGQTDA 1005


>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 592

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           TYV+T+ C  C  T C  VC V    EG       I P++C+ CG C   C   AI
Sbjct: 537 TYVITDACRGC--TACTRVCAVKAI-EGNIKEKHFIDPEKCVRCGACISACRFGAI 589


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY ++ E+CI C    CV+ CP+D    E      I P  C+ CG C   CPVD I+
Sbjct: 577 TYKIIAEDCIGC--QQCVDACPIDAISGEPGEVHEIDPAACVGCGQCVDPCPVDTIE 631



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 19  EVCPV-DCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPD 58
           E CP  DC            I  ++CI C  C   CP+DAI  +
Sbjct: 560 EECPAGDCELGSGEHAGTYKIIAEDCIGCQQCVDACPIDAISGE 603


>gi|291546307|emb|CBL19415.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. SR1/5]
          Length = 340

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+  CP            I  D+CI CG C+  CP DAI     P
Sbjct: 115 YEVSNMCRGCVAHPCLLTCPKGAISMVNGKSFIDQDKCIHCGRCKAVCPYDAIAHKERP 173



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C  VCP D     E                    +I+ D+C+ CG
Sbjct: 145 SFIDQDKCIHCG--RCKAVCPYDAIAHKERPCERACGVKAIESDEQGRASINQDKCVSCG 202

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 203 MCMVSCPFGAISD 215


>gi|149926436|ref|ZP_01914697.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
 gi|149824799|gb|EDM84013.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Limnobacter sp.
           MED105]
          Length = 200

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCPV+CFY+ +  + +H  D CI CG C   CP  A +   E   
Sbjct: 51  ISVACMHCSDAPCQAVCPVNCFYKTDEGVVLHDKDLCIGCGYCFYACPFGAPQFPQEGAF 110

Query: 64  ELWLKIN 70
               K++
Sbjct: 111 GQRGKMD 117


>gi|323484489|ref|ZP_08089855.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323692550|ref|ZP_08106783.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402267|gb|EGA94599.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323503416|gb|EGB19245.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 439

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 14/72 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE------------GENFLAIHPDECIDCGVCEPECP 51
           V  E CI C    C +VCPV                 G     +  D C+ CGVC   CP
Sbjct: 290 VNMETCIGCG--KCAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKDICLGCGVCVRNCP 347

Query: 52  VDAIKPDTEPGL 63
           V AI+ +  P  
Sbjct: 348 VSAIRLEKRPVQ 359



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           P+          +++ + CI CG C   CPV AI+ + E
Sbjct: 277 PMQPVATTNYIPSVNMETCIGCGKCAKVCPVLAIRMEEE 315


>gi|257469186|ref|ZP_05633280.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
 gi|317063434|ref|ZP_07927919.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313689110|gb|EFS25945.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 644

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + +TE CI C  T C  VCPV C     +    +    C  CG C   CPV AI    
Sbjct: 217 FRITEKCIGC--TACARVCPVKCISGKIKERHILDTSRCTHCGQCVAACPVGAIFEGD 272



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD 38
           T  C  C    CV  CPV   +EG++ + +  D
Sbjct: 250 TSRCTHCGQ--CVAACPVGAIFEGDHTMKLLKD 280


>gi|218283672|ref|ZP_03489633.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
 gi|218215661|gb|EEC89199.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
          Length = 505

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 24/58 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT  C  C    C EVCP D  +       I  ++CI CG C   CP  AI     P
Sbjct: 116 FVTNACQGCLSHQCTEVCPKDAIHIVNGKSCIDQEKCIKCGRCMDACPYHAITKLERP 173



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------------EGENFLAIHPDECIDCGVCEPE 49
           E CI C    C++ CP                      + +    I  D+C+ CG+C   
Sbjct: 150 EKCIKCG--RCMDACPYHAITKLERPCAASCGMDAIKSDADGKAEIDYDKCVSCGMCLVN 207

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 208 CPFGAI 213


>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +T+ CI C    C   CPVDC   E +    I  + C  CG C   CPVDAI
Sbjct: 217 TITKKCIGCG--ACKRACPVDCINGELKKKHEIDYNRCTHCGACVSACPVDAI 267



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           +CI CG C+  CPVD I  + +   E  +  N 
Sbjct: 221 KCIGCGACKRACPVDCINGELKKKHE--IDYNR 251



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL 33
           C  C    CV  CPVD    G+N +
Sbjct: 252 CTHCG--ACVSACPVDAISAGDNTM 274


>gi|145591183|ref|YP_001153185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282951|gb|ABP50533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 284

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC+ C    C   CPV      GE  + I+ DECI CG CE  CP D  K
Sbjct: 94  NCLHCVAAPCARACPVGAIKVTGEGAVVINRDECIGCGYCETACPYDVPK 143



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 14/56 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           + CI C +  C   CP D    G +       +C  C           C   CP +
Sbjct: 125 DECIGCGY--CETACPYDVPKRGSDGRYY---KCTFCVDRIQNGKLPACVEVCPTN 175


>gi|94266820|ref|ZP_01290483.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93452521|gb|EAT03113.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 345

 Score = 66.3 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP--VDAIKPDTEP 61
            +T +CI C    CV VCP +   E      I  ++CI CG CE  CP  VDA++ +   
Sbjct: 104 FITADCIKCG--KCVHVCPTEAISEDNR---IAREKCIGCGNCEAICPPKVDAVRYEHNE 158

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSA---AKMDGVKQ 98
                + +    A    NI         A    +   V  
Sbjct: 159 KALDKI-LPQCLAAGAENIELHAAVPGDARILEEWRAVSD 197



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 23  VDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           V     G++ +    I  D CI CG C   CP +AI  D     E  +
Sbjct: 90  VSVGMPGDHHVRKAFITAD-CIKCGKCVHVCPTEAISEDNRIAREKCI 136


>gi|258649091|ref|ZP_05736560.1| conserved domain protein [Prevotella tannerae ATCC 51259]
 gi|260850732|gb|EEX70601.1| conserved domain protein [Prevotella tannerae ATCC 51259]
          Length = 56

 Score = 65.9 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++C+ C    C+  CP +   EGE   +I+PD C+DCG C   CP  AI P
Sbjct: 1  MAYVISDDCVACG--TCIGECPTESISEGE-KYSINPDSCVDCGACADACPTGAIAP 54


>gi|108804450|ref|YP_644387.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765693|gb|ABG04575.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 531

 Score = 65.9 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CVE CPV   Y  E+ +   + D CI C  C   CP DA+  D E
Sbjct: 58  CNHCEDAPCVEACPVTALYVREDGIVDFNWDRCIGCKACTQACPYDALYIDPE 110



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 25/84 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPV 52
           + CI CK   C + CP D        L I P+     +C  C           C   CP 
Sbjct: 88  DRCIGCK--ACTQACPYDA-------LYIDPESHTAAKCNYCAHRVDMGLEPACVNVCPE 138

Query: 53  DAIKPDTEPGLELWLKINSEYATQ 76
            AI            +I+   A +
Sbjct: 139 QAIISGDMDDPAS--EISRLLARE 160


>gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
 gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
          Length = 441

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +T+ CI C  T C +VCPV C     +    I  ++C+ CG C   CP+ A+     P
Sbjct: 25  FQITDKCIGC--TKCAKVCPVSCISGKIKEKHVIDTEKCVKCGQCISACPMGAL-----P 77

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
            +        ++     NI  KK  L  A     ++    +YF   PG 
Sbjct: 78  TI--------DFTLNLKNILNKKNKLIIAQVAPSIRATLGEYFGLEPGT 118


>gi|95930556|ref|ZP_01313291.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133391|gb|EAT15055.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
          Length = 615

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 5   VTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T +CI C    CVE   CP     E      +  D CI CG C P CPV AIK
Sbjct: 552 ITSDCIGC--RRCVEAFECPALSMDEATTMAVLDQDRCIGCGTCIPVCPVHAIK 603


>gi|114706723|ref|ZP_01439623.1| formate dehydrogenase, iron-sulfur subunit, putative [Fulvimarina
           pelagi HTCC2506]
 gi|114537671|gb|EAU40795.1| formate dehydrogenase, iron-sulfur subunit, putative [Fulvimarina
           pelagi HTCC2506]
          Length = 195

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A +   
Sbjct: 48  ISVACMHCSDAPCMAVCPVDCFYQTADGVVLHSKDLCIGCGYCFYACPFGAPQYPE 103


>gi|126734222|ref|ZP_01749969.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717088|gb|EBA13952.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 197

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCMAVCPVDCFYQTSDGVVLHSKDLCIGCGYCFYACPFGAPQF 104


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T+ CI C  T C + CPV C   E +    I   +CI CG CE  CPV A+
Sbjct: 570 LSYEITDKCIGC--TKCAKNCPVSCIEGEVKKQHVIDKSQCIKCGNCETVCPVHAV 623



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           D+CI C  C   CPV  I+ + +
Sbjct: 576 DKCIGCTKCAKNCPVSCIEGEVK 598


>gi|153808350|ref|ZP_01961018.1| hypothetical protein BACCAC_02644 [Bacteroides caccae ATCC 43185]
 gi|160885009|ref|ZP_02066012.1| hypothetical protein BACOVA_03006 [Bacteroides ovatus ATCC 8483]
 gi|237712761|ref|ZP_04543242.1| ferredoxin [Bacteroides sp. D1]
 gi|237718010|ref|ZP_04548491.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|253572210|ref|ZP_04849614.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|255693219|ref|ZP_05416894.1| conserved domain protein [Bacteroides finegoldii DSM 17565]
 gi|260174361|ref|ZP_05760773.1| ferredoxin [Bacteroides sp. D2]
 gi|262409750|ref|ZP_06086288.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|294645353|ref|ZP_06723064.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|298387976|ref|ZP_06997524.1| hypothetical protein HMPREF9007_04780 [Bacteroides sp. 1_1_14]
 gi|298483140|ref|ZP_07001320.1| hypothetical protein HMPREF0106_03607 [Bacteroides sp. D22]
 gi|299147705|ref|ZP_07040768.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|315922629|ref|ZP_07918869.1| ferredoxin [Bacteroides sp. D2]
 gi|149129253|gb|EDM20469.1| hypothetical protein BACCAC_02644 [Bacteroides caccae ATCC 43185]
 gi|156109359|gb|EDO11104.1| hypothetical protein BACOVA_03006 [Bacteroides ovatus ATCC 8483]
 gi|229447173|gb|EEO52964.1| ferredoxin [Bacteroides sp. D1]
 gi|229452651|gb|EEO58442.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|251838390|gb|EES66477.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|260621028|gb|EEX43899.1| conserved domain protein [Bacteroides finegoldii DSM 17565]
 gi|262352403|gb|EEZ01505.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|292639291|gb|EFF57598.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|295084619|emb|CBK66142.1| 4Fe-4S binding domain. [Bacteroides xylanisolvens XB1A]
 gi|298259242|gb|EFI02118.1| hypothetical protein HMPREF9007_04780 [Bacteroides sp. 1_1_14]
 gi|298270657|gb|EFI12238.1| hypothetical protein HMPREF0106_03607 [Bacteroides sp. D22]
 gi|298513888|gb|EFI37774.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|313696504|gb|EFS33339.1| ferredoxin [Bacteroides sp. D2]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV+   EG +  +I+PD C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVEAISEG-DIYSINPDVCTDCGTCADVCPSEAIHP 54


>gi|212637704|ref|YP_002314229.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559188|gb|ACJ31642.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 195

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|118580644|ref|YP_901894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pelobacter propionicus DSM 2379]
 gi|118503354|gb|ABK99836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
          propionicus DSM 2379]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + ++CI C    C + CPV+   E +    I  D CIDCG C   CPV+AI
Sbjct: 1  MAHSINDDCINCG--ACDDSCPVNAISEQDGKRVIDADTCIDCGACVDTCPVNAI 53


>gi|86140241|ref|ZP_01058802.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. MED193]
 gi|85823044|gb|EAQ43258.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseobacter
           sp. MED193]
          Length = 197

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            C+ C    C+ VCPVDCFY+  + + +H  D CI CG C   CP  A + 
Sbjct: 54  ACMHCSDAPCMAVCPVDCFYQTADGVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|332829008|gb|EGK01676.1| hypothetical protein HMPREF9455_02031 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 55

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG +   I PD C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIACG--TCIDECPVNAISEG-DIYKIDPDTCTDCGTCADACPTEAIHP 54


>gi|291545260|emb|CBL18369.1| 4Fe-4S binding domain [Ruminococcus sp. 18P13]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++CI+C    C   CPV     G++   I  D CI+CG C   CPV A 
Sbjct: 1  MAYVISDDCIMCG--ACESECPVSAISAGDSKYVIDADTCIECGACAGVCPVSAP 53


>gi|291550262|emb|CBL26524.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus torques L2-14]
          Length = 434

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  D+CI CG C+  CP DAI     P
Sbjct: 48  YEVSNVCKGCLAHPCQEVCPRGAISMVNGKSFIDQDKCIKCGKCKSVCPYDAIAKKERP 106



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  + CI C    C  VCP D   + E                     I  D+C+ CG
Sbjct: 78  SFIDQDKCIKCG--KCKSVCPYDAIAKKERPCKKACGVNAITSDKLGRAYIDADKCVSCG 135

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 136 MCMVSCPFGAISD 148


>gi|222054905|ref|YP_002537267.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
 gi|221564194|gb|ACM20166.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
          Length = 442

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            V+   CI C    C   CPVD     E     I+PD+CI C  C   CP  AI+    
Sbjct: 16 ACVLEGKCIACGAR-CQSSCPVDAIEMNEAGEPVINPDKCIGCVKCVKVCPAQAIEMFFT 74

Query: 61 PGLEL 65
          P  + 
Sbjct: 75 PEEQK 79


>gi|332654077|ref|ZP_08419821.1| conserved domain protein [Ruminococcaceae bacterium D16]
 gi|332517163|gb|EGJ46768.1| conserved domain protein [Ruminococcaceae bacterium D16]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+++ CI C    C + CPV    +G +   I+   C+DCG C   CP+ AI
Sbjct: 1  MAYVISDACISCG--SCADACPVGAIAQGADHYEINAGACLDCGSCADSCPMSAI 53


>gi|325679199|ref|ZP_08158790.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109128|gb|EGC03353.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 478

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C +VCP        N +  I   +C++CG C   CP  AI     P
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAHIDKSKCVECGRCSKVCPYSAITNRVRP 153

Query: 62  GL 63
             
Sbjct: 154 CQ 155


>gi|313904957|ref|ZP_07838328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
 gi|313470214|gb|EFR65545.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
          cellulosolvens 6]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V++++C+ C    C   CPV    +G+    I  D C+DCG CE  CP  AI
Sbjct: 1  MARVISDDCVSCG--TCEGECPVGAISQGDGKFVIDADSCVDCGACEAACPTGAI 53


>gi|255014270|ref|ZP_05286396.1| ferredoxin [Bacteroides sp. 2_1_7]
 gi|256841512|ref|ZP_05547019.1| ferredoxin [Parabacteroides sp. D13]
 gi|262383318|ref|ZP_06076454.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|298376261|ref|ZP_06986217.1| hypothetical protein HMPREF0104_02443 [Bacteroides sp. 3_1_19]
 gi|301309369|ref|ZP_07215311.1| conserved domain protein [Bacteroides sp. 20_3]
 gi|256737355|gb|EEU50682.1| ferredoxin [Parabacteroides sp. D13]
 gi|262294216|gb|EEY82148.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|298267298|gb|EFI08955.1| hypothetical protein HMPREF0104_02443 [Bacteroides sp. 3_1_19]
 gi|300832458|gb|EFK63086.1| conserved domain protein [Bacteroides sp. 20_3]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +  +I+P+ C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DKYSINPEMCTDCGTCADACPTEAIHP 54



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  D+CI CG C  ECPV AI    +
Sbjct: 1  MAYVISDDCIACGTCIDECPVGAISEGDK 29


>gi|198276095|ref|ZP_03208626.1| hypothetical protein BACPLE_02282 [Bacteroides plebeius DSM
          17135]
 gi|224026834|ref|ZP_03645200.1| hypothetical protein BACCOPRO_03591 [Bacteroides coprophilus DSM
          18228]
 gi|198270907|gb|EDY95177.1| hypothetical protein BACPLE_02282 [Bacteroides plebeius DSM
          17135]
 gi|224020070|gb|EEF78068.1| hypothetical protein BACCOPRO_03591 [Bacteroides coprophilus DSM
          18228]
          Length = 55

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV    EG +  +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DKYSINPDACTECGTCADVCPSEAIH 53



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  D+CI CG C  ECPV AI    +
Sbjct: 1  MAYVISDDCIACGTCIDECPVGAISEGDK 29


>gi|227485286|ref|ZP_03915602.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236746|gb|EEI86761.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 508

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            VT+ C  C    CV VCP +          I  D+CI CG C   CP +AI     P  
Sbjct: 114 TVTDQCHACIGHPCVNVCPKNAVSYSSKGAKIDQDKCIKCGKCVEACPYNAINHQKRPCA 173

Query: 64  E 64
           E
Sbjct: 174 E 174



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 19/68 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPE 49
           + CI C    CVE CP +     +                    +I  ++C+ CG C   
Sbjct: 148 DKCIKCG--KCVEACPYNAINHQKRPCAESCGVKAIKSDELGRASIDENKCVACGRCIIT 205

Query: 50  CPVDAIKP 57
           CP  AI  
Sbjct: 206 CPFGAISD 213


>gi|210620552|ref|ZP_03292100.1| hypothetical protein CLOHIR_00043 [Clostridium hiranonis DSM
          13275]
 gi|210155266|gb|EEA86272.1| hypothetical protein CLOHIR_00043 [Clostridium hiranonis DSM
          13275]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV    EG++   I  D C++CG C   CPV A + +
Sbjct: 1  MAYKITDACVSCG--ACAAECPVGAISEGDSIYVIDADACVECGACAEACPVGAPQAE 56


>gi|189424812|ref|YP_001951989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          lovleyi SZ]
 gi|189421071|gb|ACD95469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          lovleyi SZ]
          Length = 55

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M + +T++C  C    C + CPV+   E  +   I  D CIDCG C   CPV+AI 
Sbjct: 1  MAHTITDDCTNC--AACEDSCPVNAISEQGSKRVIDADTCIDCGACVDTCPVNAIH 54


>gi|291563047|emb|CBL41863.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 513

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP D            I PD+CI CG C   C   AI     P
Sbjct: 123 VTDGCQGCLAHPCVEVCPKDAVSLDRTNGRSRIDPDKCIKCGQCANVCAYHAIIIQERP 181



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           + CI C                  C   C +D  +  EN  A I+ D+C+ CG C   CP
Sbjct: 158 DKCIKCGQCANVCAYHAIIIQERPCAAACGMDAIHSDENGKADINYDKCVSCGQCLVNCP 217

Query: 52  VDAI 55
             AI
Sbjct: 218 FGAI 221


>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
 gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
          Length = 644

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            + +NCI C    C +VCPVDC     +    I    C  CG C   CPV+AI
Sbjct: 219 TIMDNCIGCD--KCTKVCPVDCIVGDFKEQHYIDYTRCTHCGACLSTCPVNAI 269



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           D CI C  C   CPVD I  D +   + ++ 
Sbjct: 222 DNCIGCDKCTKVCPVDCIVGDFKE--QHYID 250


>gi|238917868|ref|YP_002931385.1| hypothetical protein EUBELI_01949 [Eubacterium eligens ATCC
          27750]
 gi|238873228|gb|ACR72938.1| Hypothetical protein EUBELI_01949 [Eubacterium eligens ATCC
          27750]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++CI C    C   CPV+   EG     I+ D C+DCG C   CPV A  P
Sbjct: 1  MAYVINDDCISCG--ACAAGCPVEAISEGAAHYEINADVCVDCGACAGTCPVGAPNP 55


>gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 527

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +TE CI C  T C  VCPV C     +    I   +CI CG C   CPV AI+
Sbjct: 473 YYITEKCIGC--TKCANVCPVKCIDGSIKKRHVITAQQCIKCGQCYEACPVHAIE 525


>gi|18311429|ref|NP_563363.1| ferredoxin [Clostridium perfringens str. 13]
 gi|110800097|ref|YP_697135.1| putative ferredoxin [Clostridium perfringens ATCC 13124]
 gi|168206841|ref|ZP_02632846.1| putative ferredoxin [Clostridium perfringens E str. JGS1987]
 gi|168211231|ref|ZP_02636856.1| putative ferredoxin [Clostridium perfringens B str. ATCC 3626]
 gi|168214736|ref|ZP_02640361.1| putative ferredoxin [Clostridium perfringens CPE str. F4969]
 gi|168217940|ref|ZP_02643565.1| putative ferredoxin [Clostridium perfringens NCTC 8239]
 gi|169344118|ref|ZP_02865101.1| putative ferredoxin [Clostridium perfringens C str. JGS1495]
 gi|182626000|ref|ZP_02953763.1| putative ferredoxin [Clostridium perfringens D str. JGS1721]
 gi|20141076|sp|P22846|FER_CLOPE RecName: Full=Ferredoxin
 gi|18146113|dbj|BAB82153.1| ferredoxin [Clostridium perfringens str. 13]
 gi|110674744|gb|ABG83731.1| putative ferredoxin [Clostridium perfringens ATCC 13124]
 gi|169297729|gb|EDS79828.1| putative ferredoxin [Clostridium perfringens C str. JGS1495]
 gi|170661735|gb|EDT14418.1| putative ferredoxin [Clostridium perfringens E str. JGS1987]
 gi|170710749|gb|EDT22931.1| putative ferredoxin [Clostridium perfringens B str. ATCC 3626]
 gi|170713813|gb|EDT25995.1| putative ferredoxin [Clostridium perfringens CPE str. F4969]
 gi|177908707|gb|EDT71218.1| putative ferredoxin [Clostridium perfringens D str. JGS1721]
 gi|182380036|gb|EDT77515.1| putative ferredoxin [Clostridium perfringens NCTC 8239]
          Length = 56

 Score = 65.9 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  MAYKILDTCVSCG--ACAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 56


>gi|302390415|ref|YP_003826236.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201043|gb|ADL08613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 372

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            V +NC  C    C++ CP +     +    I P++C+ CG C   C    IKP  +   
Sbjct: 190 FVDKNCRKCL--SCIKNCPEEAISLVDGAAYIDPEKCVGCGECISMCYFGVIKPQWKTDN 247

Query: 64  ELWLKINSEYA 74
             +++  +E+A
Sbjct: 248 REFIERMTEHA 258


>gi|53711888|ref|YP_097880.1| ferredoxin [Bacteroides fragilis YCH46]
 gi|52214753|dbj|BAD47346.1| ferredoxin [Bacteroides fragilis YCH46]
          Length = 56

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++E+CI C    C++ CPV    EG +  +I P++C DCG C   CP +AI P
Sbjct: 1  MAYVISEDCIACG--TCIDECPVGAISEG-DIYSIDPEQCTDCGTCADVCPSEAIHP 54


>gi|302339761|ref|YP_003804967.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636946|gb|ADK82373.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 25/61 (40%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +VT+ C  C    C  VCP +     E    I  D+CI C  C   CP  AI     P  
Sbjct: 126 IVTDKCQSCMAHPCSIVCPRNAITFPEGKAHIDQDKCIKCMKCVQVCPYSAITRMVRPCA 185

Query: 64  E 64
           E
Sbjct: 186 E 186



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 19/82 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-----------------EGENFLAIHPDECIDCG 44
            ++  + CI C    CV+VCP                      + E F  I    C+ CG
Sbjct: 155 AHIDQDKCIKC--MKCVQVCPYSAITRMVRPCAEACGVGAIDSDEEGFARIDQKVCVSCG 212

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C   CP  AI   +E     +
Sbjct: 213 LCTVSCPFGAISDKSEIVQVTF 234


>gi|262066053|ref|ZP_06025665.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380303|gb|EFE87821.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 206

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    CVEVCP +C         I  + C+ CG C   CPV A++
Sbjct: 153 YFITDKCIGCN--KCVEVCPQNCIITDSVPYVIEQNHCLHCGNCFTVCPVGAVE 204



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEP 61
               D+CI C  C   CP + I  D+ P
Sbjct: 153 YFITDKCIGCNKCVEVCPQNCIITDSVP 180


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           YV+ + CI C  T C  VCPV C  EG+      I  D+CI CG C  +C   AI
Sbjct: 560 YVINDKCIGC--TACARVCPVSCI-EGKVKEKHVIEQDKCIKCGACYDKCKFSAI 611



 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIK 56
              I+ D+CI C  C   CPV  I+
Sbjct: 559 KYVIN-DKCIGCTACARVCPVSCIE 582


>gi|163749866|ref|ZP_02157111.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
 gi|161330380|gb|EDQ01359.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
          Length = 196

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCP DCFY  E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCQAVCPADCFYRTEDGIVLHNKDTCIGCGYCLYACPFGAPQF 106


>gi|331092302|ref|ZP_08341130.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401734|gb|EGG81313.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 56

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+++ C+ C    C   CPV    +G +   I  D C+DCG C  +CP  AI  +
Sbjct: 1  MAHVISDECVSCG--ACEAECPVGAISQGADHYEISADACVDCGACAAQCPTGAISAE 56


>gi|291525181|emb|CBK90768.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 507

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP D            I  ++CI CG C   C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCMEVCPKDAISLDRTTGKSVIDQEKCIKCGRCASVCSYNAIIVQERP 175



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C + C +D     EN  A I  D+C+ CG C   CP
Sbjct: 152 EKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVNCP 211

Query: 52  VDAI 55
             AI
Sbjct: 212 FGAI 215


>gi|292491700|ref|YP_003527139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580295|gb|ADE14752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 195

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCTDAPCAAVCPVDCFYTTDDGIVLHDKDLCIGCGYCFYACPFGAPQY 104


>gi|212690928|ref|ZP_03299056.1| hypothetical protein BACDOR_00416 [Bacteroides dorei DSM 17855]
 gi|237712588|ref|ZP_04543069.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|237726898|ref|ZP_04557379.1| ferredoxin [Bacteroides sp. D4]
 gi|254882246|ref|ZP_05254956.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|265752267|ref|ZP_06088060.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|294776421|ref|ZP_06741899.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643192|ref|ZP_07997820.1| ferredoxin [Bacteroides sp. 3_1_40A]
 gi|212666160|gb|EEB26732.1| hypothetical protein BACDOR_00416 [Bacteroides dorei DSM 17855]
 gi|229435424|gb|EEO45501.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
 gi|229453909|gb|EEO59630.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|254835039|gb|EET15348.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|263237059|gb|EEZ22529.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|294449747|gb|EFG18269.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317385096|gb|EFV66047.1| ferredoxin [Bacteroides sp. 3_1_40A]
          Length = 55

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M YV++++CI C    C++ CPV+   EG +  +I+PD C +CG C   CP +AI 
Sbjct: 1  MAYVISDDCIACG--TCIDECPVEAISEG-DKYSINPDLCTECGTCADACPSEAIH 53



 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  D+CI CG C  ECPV+AI    +
Sbjct: 1  MAYVISDDCIACGTCIDECPVEAISEGDK 29


>gi|317056017|ref|YP_004104484.1| ferredoxin [Ruminococcus albus 7]
 gi|315448286|gb|ADU21850.1| ferredoxin [Ruminococcus albus 7]
          Length = 56

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV    EG+    I    C+DCG C   CPV A + +
Sbjct: 1  MAYKISDDCIGCG--ACAAECPVGAISEGDGKYVIDASACLDCGACAGTCPVGAPQAE 56


>gi|255009761|ref|ZP_05281887.1| ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 56

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +  +I P++C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DIYSIDPEQCTDCGTCADVCPSEAIHP 54


>gi|268680689|ref|YP_003305120.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618720|gb|ACZ13085.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 210

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           ++  C+ C    C +VCPVDCFY  E+ + +H  ++CI CG C   CP  A +   +
Sbjct: 56  ISIACMHCSDAPCSQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGAPQFPKD 112


>gi|325300099|ref|YP_004260016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides salanitronis DSM 18170]
 gi|324319652|gb|ADY37543.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides salanitronis DSM 18170]
          Length = 55

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +  +I+PD C +CG C   CP +AI  
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DKYSINPDMCTECGTCADVCPSEAIHQ 54



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  D+CI CG C  ECPV AI    +
Sbjct: 1  MAYVISDDCIACGTCIDECPVGAISEGDK 29


>gi|254491904|ref|ZP_05105083.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224463382|gb|EEF79652.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 194

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A +   E   
Sbjct: 51  ISVACMHCTDAPCQAVCPVDCFYTTDDGVVLHDKDICIGCGYCFYACPFGAPQYPQEG-- 108

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
                  +  A    +  T     P          KY
Sbjct: 109 -------AFGARGKMDKCTFCAGGPEEDNSQEELDKY 138


>gi|160942972|ref|ZP_02090210.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445666|gb|EDP22669.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
          Length = 538

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI     P
Sbjct: 142 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQDKCIKCGRCVTVCPYNAIVKTERP 198



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDE----------CIDCGVCEPE 49
           + CI C    CV VCP +   + E          AIH DE          C+ CG C   
Sbjct: 175 DKCIKCG--RCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 232

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 233 CPFGAI 238


>gi|189345592|ref|YP_001942121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189339739|gb|ACD89142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 517

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C    CV++CPV+   +  + +       CI C  C   CP +A+  D +
Sbjct: 51  YFTVLRCNHCAEPPCVDICPVEALQKRPDGIVDFDSRRCIGCKACAQACPYNALYIDPD 109



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 23/68 (33%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPVDA 54
           CI CK   C + CP +        L I PD     +C  C           C   CP  A
Sbjct: 89  CIGCK--ACAQACPYNA-------LYIDPDTHTSAKCNYCAHRKEVGLQPACVAICPQQA 139

Query: 55  IKPDTEPG 62
           I       
Sbjct: 140 IVSGDLDD 147



 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 7/19 (36%)

Query: 32 FLAIHPDECIDCGVCEPEC 50
             I   +CI C  C   C
Sbjct: 4  GFVIDARKCIGCHACTVAC 22


>gi|154494844|ref|ZP_02033849.1| hypothetical protein PARMER_03888 [Parabacteroides merdae ATCC
          43184]
 gi|218262678|ref|ZP_03477036.1| hypothetical protein PRABACTJOHN_02715 [Parabacteroides johnsonii
          DSM 18315]
 gi|154085394|gb|EDN84439.1| hypothetical protein PARMER_03888 [Parabacteroides merdae ATCC
          43184]
 gi|218223229|gb|EEC95879.1| hypothetical protein PRABACTJOHN_02715 [Parabacteroides johnsonii
          DSM 18315]
          Length = 56

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +  +I P+ C DCG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DKYSIDPEMCTDCGTCADACPTEAIHP 54


>gi|172040506|ref|YP_001800220.1| dimethyl sulfoxide reductase chain B [Corynebacterium urealyticum
           DSM 7109]
 gi|171851810|emb|CAQ04786.1| dimethyl sulfoxide reductase chain B [Corynebacterium urealyticum
           DSM 7109]
          Length = 213

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TY  + +C  C+   C +VCP    ++GE+ +  + PD+CI C  CE  CP  A + + E
Sbjct: 68  TYYTSISCNHCEDPICAKVCPTTAMHKGEDGIVTVDPDKCIGCRYCEWACPYSAPQFNPE 127

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
                   + ++   +             A     + +  EKY
Sbjct: 128 TKQMSKCDLCADLRAEGEEPACVTACPSRALDWGPIDELREKY 170


>gi|114049282|ref|YP_739832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117922353|ref|YP_871545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113890724|gb|ABI44775.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117614685|gb|ABK50139.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 189

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY  E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTEDGIVLHNKDACIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|317478673|ref|ZP_07937828.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905184|gb|EFV26983.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 56

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +   I P+ C +CG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DIYHIDPETCTECGTCADVCPSEAIHP 54


>gi|118445132|ref|YP_879222.1| ferredoxin [Clostridium novyi NT]
 gi|253680812|ref|ZP_04861615.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|331270643|ref|YP_004397135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
          [Clostridium botulinum BKT015925]
 gi|118135588|gb|ABK62632.1| ferredoxin [Clostridium novyi NT]
 gi|253562661|gb|EES92107.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|329127193|gb|AEB77138.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Clostridium botulinum BKT015925]
          Length = 57

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + + ++C+ C    C   CPV    +G++   I  + CIDCG C   CPV AI  + 
Sbjct: 1  MAFKIGDSCVSCG--SCASECPVGAISQGDSQFEIDANSCIDCGNCANVCPVGAIAAEE 57


>gi|153002610|ref|YP_001368291.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160877331|ref|YP_001556647.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971437|ref|YP_002356188.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|304412793|ref|ZP_07394395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307457|ref|ZP_07587192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|151367228|gb|ABS10228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160862853|gb|ABX51387.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496572|gb|ACK44765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|304348873|gb|EFM13289.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910245|gb|EFN40678.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|315269536|gb|ADT96389.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 189

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY  ++ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|313114957|ref|ZP_07800452.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622717|gb|EFQ06177.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 516

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI     P
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSIIDQDKCIKCGRCVGVCPYNAIVKTERP 177



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDE----------CIDCGVCEPE 49
           + CI C    CV VCP +   + E          AIH DE          C+ CG C   
Sbjct: 154 DKCIKCG--RCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 212 CPFGAI 217


>gi|229829818|ref|ZP_04455887.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
 gi|229791807|gb|EEP27921.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
          Length = 219

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    C  VCP +C         I  + C+ CG C   CPV A++
Sbjct: 166 YFITDACIGCG--SCAAVCPQNCIVTDSIPYIIEQEHCLHCGNCLTACPVGAVE 217



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEP 61
               D CI CG C   CP + I  D+ P
Sbjct: 166 YFITDACIGCGSCAAVCPQNCIVTDSIP 193


>gi|149194120|ref|ZP_01871218.1| formate dehydrogenase, iron-sulfur chain [Caminibacter
           mediatlanticus TB-2]
 gi|149136073|gb|EDM24551.1| formate dehydrogenase, iron-sulfur chain [Caminibacter
           mediatlanticus TB-2]
          Length = 197

 Score = 65.6 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           + V+  C+ C    C +VCPVDCFY  E+ + +H  D+CI CG C   CP  A +   + 
Sbjct: 53  FSVSVACMHCTDAPCEQVCPVDCFYIREDGIVLHDKDKCIGCGYCLYACPFGAPQFPKDG 112

Query: 62  GL 63
             
Sbjct: 113 AF 114


>gi|114320443|ref|YP_742126.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226837|gb|ABI56636.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 196

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY  ++ + +H  D CI CG C   CP  A + 
Sbjct: 51  VSVACMHCTDAPCAAVCPVDCFYTTDDGVVLHDKDLCIGCGYCFYACPFGAPQF 104


>gi|327401132|ref|YP_004341971.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316640|gb|AEA47256.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 184

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +   C+ C    C++VCP+D  Y+  + +  ++ D+CI CG C   CP  A + +
Sbjct: 51  IPMPCMHCSDPACLKVCPMDAIYKRPDGIVLVNKDKCIGCGYCSYACPFGAPQFE 105


>gi|120600660|ref|YP_965234.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291439|ref|YP_001181863.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560753|gb|ABM26680.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563129|gb|ABP74064.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428330|gb|ADV56404.1| formate dehydrogenase, FeS subunit, FdhB [Shewanella putrefaciens
           200]
          Length = 189

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY  ++ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|255654255|ref|ZP_05399664.1| ferredoxin [Clostridium difficile QCD-23m63]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYKITDACISCG--ACEAECPVSCISAGDDAYVIDASSCIDCGSCAGACPVDAPQPE 56


>gi|255279826|ref|ZP_05344381.1| Fe-hydrogenase large subunit family protein [Bryantella
           formatexigens DSM 14469]
 gi|255269599|gb|EET62804.1| Fe-hydrogenase large subunit family protein [Bryantella
           formatexigens DSM 14469]
          Length = 507

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+ C  C    CVEVCP              I  D+CI CG C   C   AI     P
Sbjct: 116 FVTDGCRGCLAHPCVEVCPKGAVTLERTNGRSVIDQDKCIKCGRCADVCSYHAIIVQERP 175


>gi|15679814|ref|NP_276932.1| hypothetical protein MTH1826 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622960|gb|AAB86292.1| unknown (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 367

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+T +C LC    CVE CPV+     E+ + I  DECI C  C   CP +    + E  +
Sbjct: 189 VITGDCNLCGV--CVEDCPVEAITLTEDGVKIEYDECIACMNCMDSCPNEVYDLNWEDDV 246

Query: 64  ELWLKINSEYA 74
             +++   EY+
Sbjct: 247 PAFIERMMEYS 257


>gi|220927620|ref|YP_002504529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          cellulolyticum H10]
 gi|219997948|gb|ACL74549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          cellulolyticum H10]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + + CI C    C   CPV C   G++   I  D CIDCG C   CPVDA + 
Sbjct: 1  MAYSINDACISCG--ACESECPVSCITAGDSIYVIDEDTCIDCGACANVCPVDAPQQ 55


>gi|332883619|gb|EGK03900.1| hypothetical protein HMPREF9456_01441 [Dysgonomonas mossii DSM
          22836]
          Length = 55

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG +   I PD C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIACG--TCIDECPVNAISEG-DIYKIDPDACTDCGTCADACPTEAIHP 54


>gi|224371439|ref|YP_002605603.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
 gi|223694156|gb|ACN17439.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
          Length = 122

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M ++  E C  C    C++ C V+     E+   I  DECI CGVC   CP +A++ D E
Sbjct: 1  MPWINKELCTGC--QTCIDECSVEAISMEEDIAFIDEDECIRCGVCHDVCPENAVRHDGE 58


>gi|212634995|ref|YP_002311520.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212556479|gb|ACJ28933.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 230

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           +YV T  C  C    CV+VCP    Y+ +  L +   D+CI C  C   CP   I  + +
Sbjct: 47  SYVPT-MCNHCSDAACVKVCPTGAMYKDKRGLTLQDNDKCIGCRKCMRACPYGVISYNKQ 105

Query: 61  PGLELWLKINS--EYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGG 110
                W    +  E AT  P +  KK           V  K   Y +P  G 
Sbjct: 106 KPHRKWQDDQALLEGATASPYMLLKK-----------VDNKVVPYLNPERGD 146


>gi|313672580|ref|YP_004050691.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939336|gb|ADR18528.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M + +T+ C  C    C + CPV    E +    I  D C DCG C   CPVDAI+
Sbjct: 1  MAHFITDACTNCG--ACEDECPVGAISEADGKRVIDADTCTDCGACAEVCPVDAIE 54


>gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 526

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y++ E CI C    C  +CPV     E  N   I  D+CI CG C   CP++AI
Sbjct: 470 LSYLIGEKCIGCG--KCKMLCPVGAISGEKRNRHEIDHDKCIKCGQCMENCPIEAI 523



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            +  ++CI CG C+  CPV AI  +     E
Sbjct: 472 YLIGEKCIGCGKCKMLCPVGAISGEKRNRHE 502


>gi|182419411|ref|ZP_02950663.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237666562|ref|ZP_04526547.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376742|gb|EDT74314.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237657761|gb|EEP55316.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 495

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C  VC             I   +C +CG+C+  CP DAI  D  P
Sbjct: 106 VTDACRNCIAHKCQSVCNFGAISYVNGRAHIDTTKCKECGMCKKACPYDAIAQDMRP 162



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDC 43
            ++ T  C  C    C + CP D   +                        I   +CI+C
Sbjct: 134 AHIDTTKCKECG--MCKKACPYDAIAQDMRPCKRACPTGAINFNKYDLSTEITESKCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI+ 
Sbjct: 192 GACMASCPFGAIED 205


>gi|95931411|ref|ZP_01314119.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132529|gb|EAT14220.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 165

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ CI C    CV+VCP +   EG +   ++   CI C VC+ ECPV+AI+  TE
Sbjct: 58  SQMCINC--QTCVDVCPTNAIVEGNDTCVVNATLCIGCQVCDAECPVEAIEEGTE 110



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           V    CI C    C   CPV+   EG   +A  ++ DEC+ CG C  ECP +AI
Sbjct: 85  VNATLCIGC--QVCDAECPVEAIEEGTEIIAPTVYTDECVACGACTNECPTNAI 136



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           V T+ C+ C    C   CP +    GE +  I  + C  C  C   CPV 
Sbjct: 116 VYTDECVACG--ACTNECPTNAISVGE-YAVITINACSGCRKCVDSCPVQ 162


>gi|167622051|ref|YP_001672345.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352073|gb|ABZ74686.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQF 106


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++ E  CI C  T C +VCPV C     +    I  ++CI CG C   CPV+AI
Sbjct: 570 YMINEEKCIGC--TKCAKVCPVSCISGKVKEKHVIDQNQCIKCGACFDACPVNAI 622



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CP     +      I+ ++CI C  C   CPV  I
Sbjct: 557 KICPAGA-CQSLLKYMINEEKCIGCTKCAKVCPVSCI 592


>gi|291165527|gb|EFE27577.1| ferredoxin [Filifactor alocis ATCC 35896]
 gi|320120475|gb|ADW16160.1| hypothetical protein HMPREF0389_01715 [Filifactor alocis ATCC
          35896]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV    +G+    I    CIDCG C   CPV A K +
Sbjct: 1  MAYKISDSCIGCG--ACEGECPVGAISQGDTQYIIDASACIDCGACAGVCPVGAPKAE 56


>gi|319938422|ref|ZP_08012816.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp.
           29_1]
 gi|319806338|gb|EFW03005.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp.
           29_1]
          Length = 502

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VT+ C  C    C EVCP            I  ++CI CG+C   CP  AI
Sbjct: 114 VTDACQGCLAHPCKEVCPKGAIDIINGRSIIDQEKCIKCGLCIKNCPYGAI 164



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 19/68 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPE 49
           E CI C    C++ CP     + E                     I  D+C+ CG+C   
Sbjct: 147 EKCIKCGL--CIKNCPYGAIMKMERPCAKACGMDAIQTDEHGHADIDYDKCVSCGMCLVN 204

Query: 50  CPVDAIKP 57
           CP  AI  
Sbjct: 205 CPFGAISD 212


>gi|126176326|ref|YP_001052475.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999531|gb|ABN63606.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 187

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY  ++ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYRTDDGIVLHNKDACIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|326383779|ref|ZP_08205464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
 gi|326197543|gb|EGD54732.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gordonia neofelifaecis NRRL B-59395]
          Length = 460

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE--LWLKINSEYATQWPNITTKKESLPS 89
           L I P  C+DCG C   CPV AI P      E   +  +N+     +P +       P 
Sbjct: 1  MLYIDPSTCVDCGACVSACPVGAIVPGHRLSDEAARFADVNA---GHYPGVEQSDTRFPV 57

Query: 90 AAKM 93
            + 
Sbjct: 58 RTEW 61



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN 31
          M Y+    C+ C    CV  CPV     G  
Sbjct: 1  MLYIDPSTCVDCG--ACVSACPVGAIVPGHR 29


>gi|295103488|emb|CBL01032.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 517

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  D+CI CG C   CP +AI     P
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQDKCIKCGRCVTVCPYNAIVKTERP 177



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDE----------CIDCGVCEPE 49
           + CI C    CV VCP +   + E          AIH DE          C+ CG C   
Sbjct: 154 DKCIKCG--RCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 212 CPFGAI 217


>gi|157963943|ref|YP_001503977.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848943|gb|ABV89442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQF 106


>gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 526

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y++ E CI C    C  +CPV     E  N   I  D+CI CG C   CP++AI
Sbjct: 470 LSYLIGEKCIGCG--KCKMLCPVGAISGEKRNRHEIDHDKCIKCGQCMENCPIEAI 523



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            +  ++CI CG C+  CPV AI  +     E
Sbjct: 472 YLIGEKCIGCGKCKMLCPVGAISGEKRNRHE 502


>gi|262276170|ref|ZP_06053979.1| formate dehydrogenase-O iron-sulfur subunit [Grimontia hollisae CIP
           101886]
 gi|262219978|gb|EEY71294.1| formate dehydrogenase-O iron-sulfur subunit [Grimontia hollisae CIP
           101886]
          Length = 201

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY  E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTEDGIVLHNKDTCIGCGYCLFACPFGAPQF 106


>gi|163731475|ref|ZP_02138922.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
 gi|161394929|gb|EDQ19251.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
          Length = 678

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  AI  D  P   ++ ++
Sbjct: 307 TKCLDVCPTGAITSAGDHVAIDPLICAGCGACSALCPSGAITYDAPPVGSVFSRL 361



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI
Sbjct: 525 VDTDACTLCL--SCVSLCPSGALGDNPDNPQLRFQEDACLQCGLCSNICPEQAI 576


>gi|170729130|ref|YP_001763156.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814477|gb|ACA89061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 196

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCP DCFY  ++ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCQAVCPADCFYRTDDGIVLHNKDTCIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|218132108|ref|ZP_03460912.1| hypothetical protein BACEGG_03736 [Bacteroides eggerthii DSM
          20697]
 gi|317477110|ref|ZP_07936351.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|319900101|ref|YP_004159829.1| ferredoxin [Bacteroides helcogenes P 36-108]
 gi|329956776|ref|ZP_08297345.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|329964134|ref|ZP_08301300.1| ferredoxin [Bacteroides fluxus YIT 12057]
 gi|217985758|gb|EEC52099.1| hypothetical protein BACEGG_03736 [Bacteroides eggerthii DSM
          20697]
 gi|316906653|gb|EFV28366.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|319415132|gb|ADV42243.1| ferredoxin [Bacteroides helcogenes P 36-108]
 gi|328523815|gb|EGF50902.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|328525654|gb|EGF52683.1| ferredoxin [Bacteroides fluxus YIT 12057]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV++++CI C    C++ CPV    EG +  +I P+ C +CG C   CP +AI P
Sbjct: 1  MAYVISDDCIACG--TCIDECPVGAISEG-DIYSIDPETCTECGTCADVCPSEAIHP 54


>gi|302873024|ref|YP_003841657.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
 gi|307688817|ref|ZP_07631263.1| ferredoxin, 4Fe-4S [Clostridium cellulovorans 743B]
 gi|302575881|gb|ADL49893.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C   CPV    +G+    I+   CIDCG C   CPV A 
Sbjct: 1  MAYVINDSCISCG--ACASECPVSAINQGDAQYEINDSSCIDCGNCANVCPVGAP 53


>gi|298372543|ref|ZP_06982533.1| ferredoxin, 4Fe-4S [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275447|gb|EFI16998.1| ferredoxin, 4Fe-4S [Bacteroidetes oral taxon 274 str. F0058]
          Length = 55

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+T++C+ C    C+  CPV    EG +   I P  C  CG C   CP +AI P+
Sbjct: 1  MAYVITDDCVACG--TCIGECPVGAISEG-DIYVIDPTACTSCGTCAEVCPSEAIHPE 55


>gi|167622055|ref|YP_001672349.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352077|gb|ABZ74690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQFPKQGAF 112


>gi|20806703|ref|NP_621874.1| uncharacterized Fe-S center protein [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515157|gb|AAM23478.1| uncharacterized Fe-S center protein [Thermoanaerobacter
           tengcongensis MB4]
          Length = 372

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV + C  C    C+  CPV           I    CI CG C   C    IKP     +
Sbjct: 190 VVGKGCTAC--QMCIRNCPVGAISLVNGSAYIDHSICIGCGECVSMCQYGVIKPQWGTDM 247

Query: 64  ELWLKINSEYA 74
           + +++  +EYA
Sbjct: 248 DAFIERMTEYA 258


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T+ CI C  T C + CPV C     +    I   +CI CG CE  CPV A+
Sbjct: 570 LSYEITDKCIGC--TKCAKNCPVSCIEGAVKKQHVIDKSQCIKCGNCETVCPVHAV 623



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 38  DECIDCGVCEPECPVDAIK 56
           D+CI C  C   CPV  I+
Sbjct: 576 DKCIGCTKCAKNCPVSCIE 594


>gi|149201541|ref|ZP_01878515.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149144589|gb|EDM32618.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 651

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+++CP        + ++I P  C  CG C   CP  AI  D  P    + +I
Sbjct: 282 CLDICPTGAISPDGDHVSIDPMICAGCGACAARCPSGAITYDAPPPDMTFRRI 334



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           V TE+C LC    CV +CP     + E+   L    D C+ CG+C   CP  AI  +
Sbjct: 498 VNTESCTLCL--SCVSLCPSGALMDNEDKPQLRFQEDACLQCGICATICPEKAITLE 552


>gi|260778688|ref|ZP_05887580.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604852|gb|EEX31147.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 202

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|294338873|emb|CAZ87210.1| BoxA (Benzoyl-CoA oxygenase component A) [Thiomonas sp. 3As]
          Length = 424

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C    C   CPV       N   +  D+C  C  C P CP  AI    +   +  
Sbjct: 17  EICIRCN--TCEATCPVGAITHDANNYVVDADKCNFCMACVPPCPTGAIDNWRDVPRDQA 74

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNP 108
             +++++   W  +    +        +G   +        P
Sbjct: 75  YPLDAQF--GWDVLPEPLDP----QDWEGADAEAPAQVDAMP 110



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPV AI  D
Sbjct: 14 IDPEICIRCNTCEATCPVGAITHD 37


>gi|291530322|emb|CBK95907.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Eubacterium siraeum 70/3]
 gi|291557135|emb|CBL34252.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Eubacterium siraeum V10Sc8a]
          Length = 56

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPV+   EG+    I  D C+ CG C   CPV A   +
Sbjct: 1  MAYKISDDCISCG--ACAAQCPVEAISEGDGKYVIDADTCVSCGACAGVCPVGAPAEE 56


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score = 65.2 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T+ CI C  T C + CPV C     +    I   +CI CG CE  CPV A+
Sbjct: 570 LSYEITDKCIGC--TKCAKNCPVSCIEGAVKKQHVIDKSQCIKCGNCETVCPVHAV 623



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 38  DECIDCGVCEPECPVDAIK 56
           D+CI C  C   CPV  I+
Sbjct: 576 DKCIGCTKCAKNCPVSCIE 594


>gi|327400634|ref|YP_004341473.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316142|gb|AEA46758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 243

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V + C  C++  CV VCPV   Y  ++ +  +  ++CI CG C   CP  A     E 
Sbjct: 109 YFVPKLCNQCENAPCVAVCPVGATYMTDDGVVLVDYEKCIGCGYCVSACPYGARYLYPED 168

Query: 62  GLELWL 67
           G   ++
Sbjct: 169 GESEYM 174


>gi|163749870|ref|ZP_02157115.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
 gi|161330384|gb|EDQ01363.1| formate dehydrogenase, iron-sulfur subunit [Shewanella benthica
           KT99]
          Length = 186

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY+ E+ L +H  D CI CG C   CP  A +   +   
Sbjct: 50  ISVACMHCTDAPCMAVCPANCFYQTEDGLTLHNKDTCIGCGYCLYACPFGAPQFPKKGAF 109


>gi|149908806|ref|ZP_01897466.1| putative formate dehydrogenase, iron-sulfur subunit [Moritella sp.
           PE36]
 gi|149808080|gb|EDM68021.1| putative formate dehydrogenase, iron-sulfur subunit [Moritella sp.
           PE36]
          Length = 205

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFERTEDGIVLHDKDLCIGCGYCLFACPFGAPQFPKQDAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 AERGKMD 119


>gi|330835620|ref|YP_004410348.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567759|gb|AEB95864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 405

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C  C +  C+  CP +   + +N +  I+ ++CI CG C+  CP +A+    +  +   
Sbjct: 58  SCNHCDNPVCLSSCPANAITKDKNGIVKINSEKCIGCGYCQWACPYEALHFSKDGTMSKC 117

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                      P       +                Y +P
Sbjct: 118 HLCFDRLGKGLPYCVEACPTGALTFGWLKEPDGNVSYLAP 157



 Score = 37.1 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 13/57 (22%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC----G----VCEPECPVDA 54
           +E CI C +  C   CP +  +  ++       +C  C    G     C   CP  A
Sbjct: 88  SEKCIGCGY--CQWACPYEALHFSKDGTM---SKCHLCFDRLGKGLPYCVEACPTGA 139


>gi|327310274|ref|YP_004337171.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermoproteus uzoniensis 768-20]
 gi|326946753|gb|AEA11859.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus uzoniensis 768-20]
          Length = 595

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YVV + C  C    C  V       +  +    I P  C  C +C   CP DAIKP    
Sbjct: 526 YVVADKCRSCG--ICYNVLKCYAIAKLPDGKAWIDPSLCSGCSMCAQVCPYDAIKPTEPE 583

Query: 62  GLELWLKI 69
            +  WL++
Sbjct: 584 KVGKWLEL 591


>gi|282882984|ref|ZP_06291588.1| ferredoxin [Peptoniphilus lacrimalis 315-B]
 gi|300813228|ref|ZP_07093596.1| ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|281297191|gb|EFA89683.1| ferredoxin [Peptoniphilus lacrimalis 315-B]
 gi|300512681|gb|EFK39813.1| ferredoxin [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 56

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T+ CI C    C   CPVDC  +G +   I+PD+CIDCG C   CPV A  P+ 
Sbjct: 1  MAYKITDACIACG--ACQAECPVDCISDG-DIYQINPDQCIDCGSCAGVCPVGAPVPED 56


>gi|313205384|ref|YP_004044041.1| 4fe-4S ferredoxin iroN-sulfur binding domain protein [Paludibacter
           propionicigenes WB4]
 gi|312444700|gb|ADQ81056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Paludibacter
           propionicigenes WB4]
          Length = 321

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA------ 54
            Y + + C  C +  CV VCPVD  ++ ++ +  I  + CI C  C   CP  A      
Sbjct: 139 AYYMPKPCQHCDNPPCVAVCPVDATFKRQDGIVLIDNERCIGCRFCIAACPYSARIFNWA 198

Query: 55  --IKPDTEPGLELWLKIN 70
             IK   + G    +++N
Sbjct: 199 EPIKSLEDEGQPYNVELN 216


>gi|225017215|ref|ZP_03706407.1| hypothetical protein CLOSTMETH_01141 [Clostridium methylpentosum
          DSM 5476]
 gi|224949990|gb|EEG31199.1| hypothetical protein CLOSTMETH_01141 [Clostridium methylpentosum
          DSM 5476]
          Length = 57

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ ++CI C    C   CPV+   EG+    I  D CI+CG C   CPV+A  P+
Sbjct: 1  MAYIINDDCISCG--ACEAECPVNAITEGDGKYCIDKDTCIECGACAGVCPVNAPNPE 56


>gi|150377582|ref|YP_001314177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150032129|gb|ABR64244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 198

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|262402193|ref|ZP_06078754.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC586]
 gi|262350975|gb|EEZ00108.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC586]
          Length = 202

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|218961763|ref|YP_001741538.1| putative electron transfer flavoprotein alpha-subunit (etfA and
          4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730420|emb|CAO81332.1| putative electron transfer flavoprotein alpha-subunit (etfA and
          4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
          acidaminovorans]
          Length = 398

 Score = 64.8 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V+ E C+ C    C+  C  D     E    I  D+C+ CG C   CP DAI
Sbjct: 3  MIEVLIEKCVGCG--ACLRACAYDAIKIEEKLAIIDSDKCVLCGACVSACPFDAI 55



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          ++C+ CG C   C  DAIK + +
Sbjct: 9  EKCVGCGACLRACAYDAIKIEEK 31


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           + +TE CI C  T C   CPV C     +    I  + CI CG C   CPV A+
Sbjct: 577 FYITEKCIGC--TKCARNCPVSCISGKVKERHVIDTEACIKCGNCMAVCPVGAV 628


>gi|85704196|ref|ZP_01035299.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85671516|gb|EAQ26374.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 653

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C+++CP        + ++I P  C  CG C   CP  AI  D  P    + +I
Sbjct: 282 CLDICPTGAITPDGDHVSIDPMICAGCGACAARCPSGAITYDAPPPDMTFRRI 334



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           V T+ C LC    CV +CP     + E+   L    D C+ CG+C   CP  AI  +
Sbjct: 500 VNTDACTLCL--SCVSLCPSGALMDNEDKPQLRFQEDACLQCGICATICPEKAITLE 554


>gi|126697745|ref|YP_001086642.1| ferredoxin [Clostridium difficile 630]
 gi|254973833|ref|ZP_05270305.1| ferredoxin [Clostridium difficile QCD-66c26]
 gi|255091219|ref|ZP_05320697.1| ferredoxin [Clostridium difficile CIP 107932]
 gi|255099336|ref|ZP_05328313.1| ferredoxin [Clostridium difficile QCD-63q42]
 gi|255305170|ref|ZP_05349342.1| ferredoxin [Clostridium difficile ATCC 43255]
 gi|255312877|ref|ZP_05354460.1| ferredoxin [Clostridium difficile QCD-76w55]
 gi|255515636|ref|ZP_05383312.1| ferredoxin [Clostridium difficile QCD-97b34]
 gi|255648730|ref|ZP_05395632.1| ferredoxin [Clostridium difficile QCD-37x79]
 gi|260681952|ref|YP_003213237.1| ferredoxin [Clostridium difficile CD196]
 gi|260685550|ref|YP_003216683.1| ferredoxin [Clostridium difficile R20291]
 gi|306518850|ref|ZP_07405197.1| ferredoxin [Clostridium difficile QCD-32g58]
 gi|115249182|emb|CAJ66994.1| Ferredoxin (4Fe-4S cluster-containing protein) (fdx-like)
          [Clostridium difficile]
 gi|260208115|emb|CBA60382.1| ferredoxin [Clostridium difficile CD196]
 gi|260211566|emb|CBE01761.1| ferredoxin [Clostridium difficile R20291]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV C   G++   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYKITDACISCG--ACEAECPVSCISAGDDAYVIDAGSCIDCGSCAGACPVDAPQPE 56


>gi|255659932|ref|ZP_05405341.1| conserved domain protein [Mitsuokella multacida DSM 20544]
 gi|260847803|gb|EEX67810.1| conserved domain protein [Mitsuokella multacida DSM 20544]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y + ++CI C    C   CPV+   EG     I  D+C++CG C   CPV AI+
Sbjct: 1  MAYKINDDCISCG--SCAATCPVEAISEGAEHYEIDADKCVECGACAAGCPVSAIE 54


>gi|153810606|ref|ZP_01963274.1| hypothetical protein RUMOBE_00987 [Ruminococcus obeum ATCC 29174]
 gi|149833785|gb|EDM88866.1| hypothetical protein RUMOBE_00987 [Ruminococcus obeum ATCC 29174]
 gi|295108222|emb|CBL22175.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus obeum A2-162]
          Length = 57

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+++ C+ C    C   CP +   EG     I  D C+DCG C   CP +AI P
Sbjct: 1  MAYVISDECVSCG--TCAAECPAEAISEGAEHFEIDADACLDCGTCADACPTEAIHP 55



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             +  DEC+ CG C  ECP +AI    E 
Sbjct: 1  MAYVISDECVSCGTCAAECPAEAISEGAEH 30


>gi|269102696|ref|ZP_06155393.1| formate dehydrogenase-O iron-sulfur subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162594|gb|EEZ41090.1| formate dehydrogenase-O iron-sulfur subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSQTEDGIVQHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           + + +
Sbjct: 110 QAFAE 114


>gi|217971441|ref|YP_002356192.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496576|gb|ACK44769.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 198

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP DCFY   + + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYRTVDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|323499043|ref|ZP_08104023.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sinaloensis DSM
           21326]
 gi|323315878|gb|EGA68909.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sinaloensis DSM
           21326]
          Length = 202

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|309388856|gb|ADO76736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halanaerobium praevalens DSM 2228]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V++++CILC    C   CPV+C  EG+    I  D+CIDC  C   CPVDAI
Sbjct: 1  MAHVISDDCILCG--ACAPECPVECISEGDTQYEIAADDCIDCAACVSVCPVDAI 53


>gi|218709475|ref|YP_002417096.1| formate dehydrogenase iron-sulfur subunit [Vibrio splendidus LGP32]
 gi|218322494|emb|CAV18651.1| Formate dehydrogenase iron-sulfur subunit [Vibrio splendidus LGP32]
          Length = 202

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|148378067|ref|YP_001252608.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 3502]
 gi|153934228|ref|YP_001382466.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 19397]
 gi|153936953|ref|YP_001386018.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. Hall]
 gi|153941409|ref|YP_001389424.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. Langeland]
 gi|168181164|ref|ZP_02615828.1| ferredoxin, 4Fe-4S [Clostridium botulinum NCTC 2916]
 gi|168185099|ref|ZP_02619763.1| ferredoxin, 4Fe-4S [Clostridium botulinum Bf]
 gi|170755610|ref|YP_001779687.1| ferredoxin, 4Fe-4S [Clostridium botulinum B1 str. Okra]
 gi|170758331|ref|YP_001785390.1| ferredoxin, 4Fe-4S [Clostridium botulinum A3 str. Loch Maree]
 gi|187777348|ref|ZP_02993821.1| hypothetical protein CLOSPO_00900 [Clostridium sporogenes ATCC
          15579]
 gi|226947285|ref|YP_002802376.1| ferredoxin, 4Fe-4S [Clostridium botulinum A2 str. Kyoto]
 gi|237793373|ref|YP_002860925.1| ferredoxin, 4Fe-4S [Clostridium botulinum Ba4 str. 657]
 gi|148287551|emb|CAL81615.1| ferredoxin [Clostridium botulinum A str. ATCC 3502]
 gi|152930272|gb|ABS35772.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. ATCC 19397]
 gi|152932867|gb|ABS38366.1| ferredoxin, 4Fe-4S [Clostridium botulinum A str. Hall]
 gi|152937305|gb|ABS42803.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. Langeland]
 gi|169120822|gb|ACA44658.1| ferredoxin, 4Fe-4S [Clostridium botulinum B1 str. Okra]
 gi|169405320|gb|ACA53731.1| ferredoxin, 4Fe-4S [Clostridium botulinum A3 str. Loch Maree]
 gi|182667994|gb|EDT79973.1| ferredoxin, 4Fe-4S [Clostridium botulinum NCTC 2916]
 gi|182671843|gb|EDT83804.1| ferredoxin, 4Fe-4S [Clostridium botulinum Bf]
 gi|187774276|gb|EDU38078.1| hypothetical protein CLOSPO_00900 [Clostridium sporogenes ATCC
          15579]
 gi|226844082|gb|ACO86748.1| ferredoxin, 4Fe-4S [Clostridium botulinum A2 str. Kyoto]
 gi|229261182|gb|ACQ52215.1| ferredoxin, 4Fe-4S [Clostridium botulinum Ba4 str. 657]
 gi|295317534|gb|ADF97911.1| ferredoxin, 4Fe-4S [Clostridium botulinum F str. 230613]
 gi|322804331|emb|CBZ01881.1| ferredoxin [Clostridium botulinum H04402 065]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A   D
Sbjct: 1  MAYKITDACVSCG--ACAAECPVNAISQGDSIFDIDADTCIDCGNCANVCPVGAPVQD 56


>gi|119776744|ref|YP_929484.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
 gi|119769244|gb|ABM01815.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
          Length = 198

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP +CFY+ ++ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCMAVCPANCFYKTDDGIVLHNKDTCIGCGYCFYACPFGAPQF 106


>gi|89074879|ref|ZP_01161329.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           sp. SKA34]
 gi|90578566|ref|ZP_01234376.1| putative formate dehydrogenase, iron-sulfur subunit [Vibrio
           angustum S14]
 gi|89049276|gb|EAR54839.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           sp. SKA34]
 gi|90439399|gb|EAS64580.1| putative formate dehydrogenase, iron-sulfur subunit [Vibrio
           angustum S14]
          Length = 205

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSQTEDGIVQHDKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFAE 114


>gi|113972052|ref|YP_735845.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886736|gb|ABI40788.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 189

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHNKDACIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|167770142|ref|ZP_02442195.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
 gi|167667464|gb|EDS11594.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
          Length = 479

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V   C  C    C   CP       +    I  ++C++CG C   CP  AI   T P
Sbjct: 95  YHVGSACRGCIAHRCEHACPTGAISVHDGKAHIDQEKCVECGRCATACPYSAIMKYTRP 153



 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++  E C+ C    C   CP     +                  +N   I  D+CI CG
Sbjct: 125 AHIDQEKCVECG--RCATACPYSAIMKYTRPCENACKIKAISMHRDNSAKIDNDKCIACG 182

Query: 45  VCEPECPVDAI 55
            C  +CP  AI
Sbjct: 183 ACVYQCPFGAI 193


>gi|148976175|ref|ZP_01812918.1| formate dehydrogenase, iron-sulfur subunit [Vibrionales bacterium
           SWAT-3]
 gi|145964570|gb|EDK29824.1| formate dehydrogenase, iron-sulfur subunit [Vibrionales bacterium
           SWAT-3]
          Length = 202

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|84385483|ref|ZP_00988514.1| formate dehydrogenase, iron-sulfur subunit [Vibrio splendidus
           12B01]
 gi|86145998|ref|ZP_01064325.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. MED222]
 gi|84379463|gb|EAP96315.1| formate dehydrogenase, iron-sulfur subunit [Vibrio splendidus
           12B01]
 gi|85836203|gb|EAQ54334.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. MED222]
          Length = 202

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|24375991|ref|NP_720034.1| formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
 gi|24350990|gb|AAN57478.1|AE015883_9 formate dehydrogenase, iron-sulfur subunit [Shewanella oneidensis
           MR-1]
          Length = 189

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQF 106


>gi|261252991|ref|ZP_05945564.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio orientalis CIP
           102891]
 gi|260936382|gb|EEX92371.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio orientalis CIP
           102891]
          Length = 202

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|28898288|ref|NP_797893.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837744|ref|ZP_01990411.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|260361862|ref|ZP_05774871.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           K5030]
 gi|260878625|ref|ZP_05890980.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|260896157|ref|ZP_05904653.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|260899667|ref|ZP_05908062.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|28806505|dbj|BAC59777.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748849|gb|EDM59684.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|308086168|gb|EFO35863.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           Peru-466]
 gi|308091052|gb|EFO40747.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AN-5034]
 gi|308109456|gb|EFO46996.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           AQ4037]
 gi|308111412|gb|EFO48952.1| formate dehydrogenase iron-sulfur subunit [Vibrio parahaemolyticus
           K5030]
 gi|328473703|gb|EGF44538.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           10329]
          Length = 202

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|34541097|ref|NP_905576.1| ferredoxin, 4Fe-4S [Porphyromonas gingivalis W83]
 gi|188994759|ref|YP_001929011.1| ferredoxin 4Fe-4S [Porphyromonas gingivalis ATCC 33277]
 gi|34397412|gb|AAQ66475.1| ferredoxin, 4Fe-4S [Porphyromonas gingivalis W83]
 gi|188594439|dbj|BAG33414.1| ferredoxin 4Fe-4S [Porphyromonas gingivalis ATCC 33277]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG     I  D CIDCG C   CP +AI P
Sbjct: 1  MAYVINDSCVACG--SCIDECPVSAISEGS-IYKIDADTCIDCGTCAAACPSEAIHP 54


>gi|315452565|ref|YP_004072835.1| putative formate dehydrogenase subunit B [Helicobacter felis ATCC
           49179]
 gi|315131617|emb|CBY82245.1| putative formate dehydrogenase subunit B [Helicobacter felis ATCC
           49179]
          Length = 212

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C  C    C +VCPVDCFY  E+ + +H  + CI CG C   CP  A +   +   
Sbjct: 64  ISIACQHCTDAPCAQVCPVDCFYIREDGIVLHNKETCIGCGYCLYACPFGAPQFPRDGAF 123


>gi|268610306|ref|ZP_06144033.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ruminococcus flavefaciens FD-1]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+++++CI C    C   CPV    EG+    I  D C++CG C   CPV A   +
Sbjct: 1  MAYIISDDCISCG--ACAGECPVSAISEGDGKYQIDADACVECGACAGVCPVGAPNAE 56


>gi|189464155|ref|ZP_03012940.1| hypothetical protein BACINT_00491 [Bacteroides intestinalis DSM
          17393]
 gi|189437945|gb|EDV06930.1| hypothetical protein BACINT_00491 [Bacteroides intestinalis DSM
          17393]
          Length = 56

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG +  +I P+ C DCG C   CP +AI P
Sbjct: 1  MAYVINDSCVACG--TCIDECPVGAISEG-DIYSIDPETCTDCGTCADVCPSEAIHP 54


>gi|157831039|pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
          Model At 1.8 Angstroms Resolution
          Length = 55

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+ E CI C    C   CPVD   +G +   I  D CIDCG C   CPVDA 
Sbjct: 1  AYVINEACISCG--ACEPECPVDAISQGGSRYVIDADTCIDCGACAGVCPVDAP 52


>gi|78185918|ref|YP_373961.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           luteolum DSM 273]
 gi|78165820|gb|ABB22918.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C+   CV++CPV+  ++  + +       CI C  C   CP +++  D E
Sbjct: 51  YFTVLRCNHCEEPPCVDICPVEALHKRPDGIVDFDSRRCIGCKACAQACPYNSVYIDPE 109



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 6/19 (31%), Positives = 7/19 (36%)

Query: 32 FLAIHPDECIDCGVCEPEC 50
             I   +CI C  C   C
Sbjct: 4  GFVIDARKCIGCHACSVAC 22


>gi|254508923|ref|ZP_05121031.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           16]
 gi|219548162|gb|EED25179.1| formate dehydrogenase, iron-sulfur subunit [Vibrio parahaemolyticus
           16]
          Length = 199

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 106

Query: 64  ELWLK 68
           E + +
Sbjct: 107 EAFGE 111


>gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
          Length = 646

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +T+ CI C    C   CPVDC   E +    I  ++C  CG C   CPVDAI
Sbjct: 219 TITKKCIGCG--SCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +CI CG C+  CPVD I  D E   +  +  N
Sbjct: 223 KCIGCGSCKRACPVDCI--DGELKKQHNIDYN 252



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL 33
           C  C    C+  CPVD    G N +
Sbjct: 254 CTHCG--ACISACPVDAITAGNNTI 276


>gi|110634791|ref|YP_674999.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285775|gb|ABG63834.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 198

 Score = 64.8 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPVDCFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVDCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|317489682|ref|ZP_07948186.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911276|gb|EFV32881.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 237

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +   C+ C++  CV VCPV   Y GE+ +  I  D CI C  C   CP  A
Sbjct: 81  IPRPCMQCENPACVSVCPVSATYRGEDGIVVIDADRCIGCKYCIAACPYGA 131


>gi|326202931|ref|ZP_08192798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325987008|gb|EGD47837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 56

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +++ CI C    C   CPV C   G++   I  D CI+CG C   CPVDA + 
Sbjct: 1  MAYSISDACISCG--ACESECPVSCITAGDSVYVIDEDTCIECGACANVCPVDAPQQ 55


>gi|91223723|ref|ZP_01258987.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           12G01]
 gi|254229547|ref|ZP_04922960.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. Ex25]
 gi|262394264|ref|YP_003286118.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. Ex25]
 gi|91191215|gb|EAS77480.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           12G01]
 gi|151937920|gb|EDN56765.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. Ex25]
 gi|262337858|gb|ACY51653.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. Ex25]
          Length = 202

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFGE 114


>gi|262165716|ref|ZP_06033453.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus VM223]
 gi|262171469|ref|ZP_06039147.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus MB-451]
 gi|261892545|gb|EEY38531.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus MB-451]
 gi|262025432|gb|EEY44100.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio mimicus VM223]
          Length = 202

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|297618232|ref|YP_003703391.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297146069|gb|ADI02826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 58

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M+YV+T+ C+ C    CV+ CPV    E E+   I P+ C +CG C   CP  A K
Sbjct: 1  MSYVITDECVACGV--CVDECPVGAITEHEDKYIIDPELCTECGSCVDACPTGAPK 54


>gi|260588646|ref|ZP_05854559.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|331082003|ref|ZP_08331131.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541121|gb|EEX21690.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|330405598|gb|EGG85128.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 501

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C E+CP       +    I  ++CI CG C+  CP DAI     P
Sbjct: 115 YEVSNMCRGCVAHPCKEICPKGAISIIKGKSVIDQEKCIKCGKCKSVCPYDAIAKKERP 173



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 19/68 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCGVCEPE 49
           E CI C    C  VCP D   + E                     I+ ++C+ CG+C   
Sbjct: 150 EKCIKCG--KCKSVCPYDAIAKKERPCARACGVNAIESDEMGRATINNEKCVSCGMCMVS 207

Query: 50  CPVDAIKP 57
           CP  AI  
Sbjct: 208 CPFGAISD 215


>gi|153832374|ref|ZP_01985041.1| formate dehydrogenase iron-sulfur subunit [Vibrio harveyi HY01]
 gi|156974561|ref|YP_001445468.1| hypothetical protein VIBHAR_02279 [Vibrio harveyi ATCC BAA-1116]
 gi|269963064|ref|ZP_06177400.1| formate dehydrogenase, iron-sulfur subunit [Vibrio harveyi 1DA3]
 gi|148871403|gb|EDL70266.1| formate dehydrogenase iron-sulfur subunit [Vibrio harveyi HY01]
 gi|156526155|gb|ABU71241.1| hypothetical protein VIBHAR_02279 [Vibrio harveyi ATCC BAA-1116]
 gi|269832196|gb|EEZ86319.1| formate dehydrogenase, iron-sulfur subunit [Vibrio harveyi 1DA3]
          Length = 202

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|88603039|ref|YP_503217.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188501|gb|ABD41498.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 369

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C +  CV  CP D  + G+         C  C  C   CP  AI    E  +  +L+
Sbjct: 197 CVGCGY--CVTQCPFDAIHMGKKATV-DKSVCYGCSACLQVCPEQAILFHWERDVPRFLE 253

Query: 69  INSEYA 74
             +EYA
Sbjct: 254 RMAEYA 259



 Score = 40.5 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
            I+   C+ CG C  +CP DAI 
Sbjct: 191 EINESRCVGCGYCVTQCPFDAIH 213


>gi|119996|sp|P00200|FER_CLOTS RecName: Full=Ferredoxin
          Length = 55

 Score = 64.4 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +++T+ CI C    C   CPV+  +EG     +  D CIDCG CE  CP  A+K +
Sbjct: 1  AHIITDECISCG--ACAAECPVEAIHEGTGKYEVDADTCIDCGACEAVCPTGAVKAE 55


>gi|291288299|ref|YP_003505115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Denitrovibrio acetiphilus DSM 12809]
 gi|290885459|gb|ADD69159.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Denitrovibrio acetiphilus DSM 12809]
          Length = 55

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + ++C  C    C + CPV    EG++   I  D C DCG C   CPVDAI
Sbjct: 1  MAYTINDSCTNCGV--CEDECPVGAISEGDDVRVIDADTCTDCGACAEVCPVDAI 53


>gi|326424045|ref|NP_761415.2| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           CMCP6]
 gi|319999422|gb|AAO10942.2| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           CMCP6]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|323344712|ref|ZP_08084936.1| ferredoxin [Prevotella oralis ATCC 33269]
 gi|323093982|gb|EFZ36559.1| ferredoxin [Prevotella oralis ATCC 33269]
          Length = 55

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++CI C    C++ CPV    EG N   I+PD C +CG C   CP +AI
Sbjct: 1  MAYVISDDCIACG--SCIDECPVGAISEG-NKYNINPDMCTECGTCADVCPNEAI 52


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV+E C  C    C + CPVDC    +G+    I  ++CI CG C   CP  AI
Sbjct: 544 VVSELCKKCG--ICAKKCPVDCISGVKGKEVYLIDQEKCIKCGACLEACPFKAI 595


>gi|153005941|ref|YP_001380266.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029514|gb|ABS27282.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 263

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++ V + C  CK T CV+VCPV   Y  ++ L  +  D CI CG C   CP  
Sbjct: 129 SFFVPKMCNHCKETPCVQVCPVGASYRTQDGLVLVDGDRCIGCGYCVQACPYG 181


>gi|78355772|ref|YP_387221.1| hydrogenase-like [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218177|gb|ABB37526.1| hydrogenase-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 483

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  C  C    CV+ CP D     +    I PD+C+ CG C   CP  AI
Sbjct: 115 TSACRGCLAEACVQHCPKDAVRIVDGKSRIDPDKCVQCGKCMNVCPYHAI 164



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           + C+ C                  C E CP     + E     I  D CI CG C   CP
Sbjct: 147 DKCVQCGKCMNVCPYHAIVQIPIPCEESCPTGAISKDECGKQVIDYDRCIFCGKCMAACP 206

Query: 52  VDAI 55
             A+
Sbjct: 207 FAAV 210


>gi|313157397|gb|EFR56820.1| ferredoxin [Alistipes sp. HGB5]
          Length = 55

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C+ C    C+  CPV+    G +   I P+ CIDCG C   CP +AI P+
Sbjct: 1  MAYKITDSCVACG--TCIGECPVEAISAG-DIYVIDPNTCIDCGTCAGVCPSEAIIPE 55


>gi|170749608|ref|YP_001755868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656130|gb|ACB25185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 198

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGCGYCFYACPFGAPQY 104


>gi|37679883|ref|NP_934492.1| formate dehydrogenase, iron-sulfur subunit [Vibrio vulnificus
           YJ016]
 gi|320156342|ref|YP_004188721.1| formate dehydrogenase-O, iron-sulfur subunit [Vibrio vulnificus
           MO6-24/O]
 gi|37198628|dbj|BAC94463.1| formate dehydrogenase, iron-sulfur subunit [Vibrio vulnificus
           YJ016]
 gi|319931654|gb|ADV86518.1| formate dehydrogenase-O, iron-sulfur subunit / Putative formate
           dehydrogenase iron-sulfur subunit [Vibrio vulnificus
           MO6-24/O]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|229529447|ref|ZP_04418837.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           12129(1)]
 gi|229333221|gb|EEN98707.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           12129(1)]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|163849840|ref|YP_001637883.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|188579726|ref|YP_001923171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|218528470|ref|YP_002419286.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240137064|ref|YP_002961533.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens AM1]
 gi|254559072|ref|YP_003066167.1| formate dehydrogenase iron-sulfur subunit beta [Methylobacterium
           extorquens DM4]
 gi|27902653|gb|AAO24617.1| formate dehydrogenase beta subunit [Methylobacterium extorquens]
 gi|163661445|gb|ABY28812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
 gi|179343224|gb|ACB78636.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|218520773|gb|ACK81358.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|240007030|gb|ACS38256.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens AM1]
 gi|254266350|emb|CAX22114.1| Formate dehydrogenase iron-sulfur (beta) subunit [Methylobacterium
           extorquens DM4]
          Length = 198

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGCGYCFYACPFGAPQY 104


>gi|119776740|ref|YP_929480.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
 gi|119769240|gb|ABM01811.1| formate dehydrogenase, iron-sulfur subunit [Shewanella amazonensis
           SB2B]
          Length = 189

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY+ E  + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCSDAPCMAVCPANCFYKTEEGIVLHDKDTCIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|319790198|ref|YP_004151831.1| molybdopterin dinucleotide-binding region protein [Thermovibrio
           ammonificans HB-1]
 gi|317114700|gb|ADU97190.1| molybdopterin dinucleotide-binding region protein [Thermovibrio
           ammonificans HB-1]
          Length = 1172

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV  CP +    G    + I   +C  C  C P CP +AI  D
Sbjct: 90  CKQCFEHPCVSACPFNAISVGRGGVVVIDDSKCTGCEKCVPACPFNAIVMD 140


>gi|242239680|ref|YP_002987861.1| dimethylsulfoxide reductase, chain B [Dickeya dadantii Ech703]
 gi|242131737|gb|ACS86039.1| dimethylsulfoxide reductase, chain B [Dickeya dadantii Ech703]
          Length = 205

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    + +G+NF+ +    CI C  CE  CP  A + D  
Sbjct: 60  AYYLSVSCNHCSDPACTKVCPTGAMHKQGDNFVVVDESICIGCRYCEMACPYGAPQFDAA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|157963939|ref|YP_001503973.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848939|gb|ABV89438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCDDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQFPKQGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GARGKMD 119


>gi|260772826|ref|ZP_05881742.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio metschnikovii
           CIP 69.14]
 gi|260611965|gb|EEX37168.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio metschnikovii
           CIP 69.14]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVKTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQSAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 AERGKMD 119


>gi|170741277|ref|YP_001769932.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195551|gb|ACA17498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 198

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|126727358|ref|ZP_01743193.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703353|gb|EBA02451.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 650

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C+ VCP          +AI P  C  CG C   CP  AI  D  P   ++ ++
Sbjct: 280 NCLNVCPTGAIVSAGEHVAIDPMICAGCGACSAVCPSGAISYDAPPVETVFQRL 333



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           E+C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI
Sbjct: 500 ESCTLCL--SCVSLCPSGALADNPDMPQLRFQEDACLQCGLCSNICPENAI 548


>gi|325265417|ref|ZP_08132141.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
 gi|324029418|gb|EGB90709.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
          Length = 503

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C EVCP            I  ++CI CG C+  CP DAI     P
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKGAISFVNGKSFIDQEKCIKCGKCKSVCPYDAIAKKERP 175



 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++  E CI C    C  VCP D   + E                     I P++C+ CG
Sbjct: 147 SFIDQEKCIKCG--KCKSVCPYDAIAKKERPCKNACGVSAIGSDKYGRAFIDPEKCVSCG 204

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 205 MCMVSCPFGAISD 217


>gi|269968574|ref|ZP_06182576.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           40B]
 gi|269826785|gb|EEZ81117.1| formate dehydrogenase, iron-sulfur subunit [Vibrio alginolyticus
           40B]
          Length = 199

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 106

Query: 64  ELWLK 68
           E + +
Sbjct: 107 EAFGE 111


>gi|153956381|ref|YP_001397146.1| ferredoxin [Clostridium kluyveri DSM 555]
 gi|146349239|gb|EDK35775.1| Ferredoxin [Clostridium kluyveri DSM 555]
          Length = 57

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T+ C+ C    C   CPV+C  +G+    I    CIDCG C   CPV A
Sbjct: 1  MAYKITDACMNCG--ACASECPVECISQGDTQFLIDDGTCIDCGSCASVCPVGA 52


>gi|111027053|ref|YP_709031.1| polysulphide reductase [Rhodococcus jostii RHA1]
 gi|110825592|gb|ABH00873.1| probable polysulphide reductase [Rhodococcus jostii RHA1]
          Length = 509

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV++CP    ++ ++ +     + CI C  C   CP DA+  D 
Sbjct: 60  CNHCTDAPCVKICPTQALFKRDDGIVDFDNERCIGCKSCMQACPYDALYIDD 111


>gi|258622879|ref|ZP_05717895.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM573]
 gi|258625040|ref|ZP_05719961.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM603]
 gi|258582673|gb|EEW07501.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM603]
 gi|258584818|gb|EEW09551.1| formate dehydrogenase, iron-sulfur subunit [Vibrio mimicus VM573]
          Length = 199

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 50  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 109

Query: 64  ELWLKIN 70
               K++
Sbjct: 110 GERGKMD 116


>gi|220925126|ref|YP_002500428.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949733|gb|ACL60125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 198

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C  VCPV+CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDLCIGCGYCFYACPFGAPQY 104


>gi|163800919|ref|ZP_02194819.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. AND4]
 gi|159175268|gb|EDP60065.1| formate dehydrogenase, iron-sulfur subunit [Vibrio sp. AND4]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           + + +
Sbjct: 110 QAFGE 114


>gi|254286426|ref|ZP_04961384.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           AM-19226]
 gi|150423593|gb|EDN15536.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           AM-19226]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|15641521|ref|NP_231153.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587191|ref|ZP_01676965.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           2740-80]
 gi|121726940|ref|ZP_01680141.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V52]
 gi|147675071|ref|YP_001217065.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|153214795|ref|ZP_01949624.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 1587]
 gi|153801187|ref|ZP_01955773.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-3]
 gi|153818524|ref|ZP_01971191.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae NCTC
           8457]
 gi|153822821|ref|ZP_01975488.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae B33]
 gi|153824883|ref|ZP_01977550.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-2]
 gi|153829769|ref|ZP_01982436.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 623-39]
 gi|227081670|ref|YP_002810221.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae M66-2]
 gi|229508540|ref|ZP_04398043.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae BX
           330286]
 gi|229511389|ref|ZP_04400868.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae B33]
 gi|229514918|ref|ZP_04404378.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TMA
           21]
 gi|229518528|ref|ZP_04407971.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC9]
 gi|229520548|ref|ZP_04409972.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TM
           11079-80]
 gi|229523595|ref|ZP_04413000.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229607945|ref|YP_002878593.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           MJ-1236]
 gi|254226566|ref|ZP_04920148.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V51]
 gi|254848633|ref|ZP_05237983.1| formate dehydrogenase [Vibrio cholerae MO10]
 gi|255745047|ref|ZP_05418997.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholera CIRS
           101]
 gi|261211641|ref|ZP_05925928.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC341]
 gi|262161666|ref|ZP_06030684.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae INDRE
           91/1]
 gi|262169544|ref|ZP_06037235.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC27]
 gi|262190850|ref|ZP_06049070.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae CT
           5369-93]
 gi|297579081|ref|ZP_06941009.1| formate dehydrogenase [Vibrio cholerae RC385]
 gi|9656016|gb|AAF94667.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548534|gb|EAX58588.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae
           2740-80]
 gi|121630702|gb|EAX63089.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V52]
 gi|124115137|gb|EAY33957.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 1587]
 gi|124123307|gb|EAY42050.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-3]
 gi|125620902|gb|EAZ49254.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae V51]
 gi|126510927|gb|EAZ73521.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae NCTC
           8457]
 gi|126519680|gb|EAZ76903.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae B33]
 gi|146316954|gb|ABQ21493.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|148874748|gb|EDL72883.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae 623-39]
 gi|149741601|gb|EDM55631.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae MZO-2]
 gi|227009558|gb|ACP05770.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae M66-2]
 gi|227013426|gb|ACP09636.1| formate dehydrogenase, iron-sulfur subunit [Vibrio cholerae O395]
 gi|229337176|gb|EEO02193.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae bv.
           albensis VL426]
 gi|229342372|gb|EEO07366.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TM
           11079-80]
 gi|229343217|gb|EEO08192.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC9]
 gi|229347623|gb|EEO12582.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae TMA
           21]
 gi|229351354|gb|EEO16295.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae B33]
 gi|229354494|gb|EEO19417.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae BX
           330286]
 gi|229370600|gb|ACQ61023.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae
           MJ-1236]
 gi|254844338|gb|EET22752.1| formate dehydrogenase [Vibrio cholerae MO10]
 gi|255737518|gb|EET92913.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholera CIRS
           101]
 gi|260838991|gb|EEX65623.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio sp. RC341]
 gi|262021778|gb|EEY40488.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae RC27]
 gi|262028398|gb|EEY47053.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae INDRE
           91/1]
 gi|262033269|gb|EEY51787.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio cholerae CT
           5369-93]
 gi|297536675|gb|EFH75508.1| formate dehydrogenase [Vibrio cholerae RC385]
          Length = 202

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|291279714|ref|YP_003496549.1| formate dehydrogenase subunit beta [Deferribacter desulfuricans
           SSM1]
 gi|290754416|dbj|BAI80793.1| formate dehydrogenase, beta subunit [Deferribacter desulfuricans
           SSM1]
          Length = 195

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCPVD  Y+ E+ +  ++ D CI CG C   CP  A + 
Sbjct: 51  ISVACMHCSDAPCIAVCPVDALYQREDGIVLVNKDVCIGCGYCFFACPFGAPQF 104


>gi|238923605|ref|YP_002937121.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
 gi|238875280|gb|ACR74987.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
          Length = 530

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP D            I  ++CI CG C   C  +AI     P
Sbjct: 140 VTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSYNAIIVQERP 198



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C + C +D     EN  A I  D+C+ CG C   CP
Sbjct: 175 EKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVNCP 234

Query: 52  VDAI 55
             AI
Sbjct: 235 FGAI 238


>gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
 gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
          Length = 526

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + E+CI C    C  +CP +    E      I+ D+CI CG C+  CP++AI
Sbjct: 472 YTIGEDCIGCG--KCKRLCPNEAIAGEARKKHEINQDKCIKCGQCKDNCPINAI 523



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++CI CG C+  CP +AI  +     E
Sbjct: 476 EDCIGCGKCKRLCPNEAIAGEARKKHE 502


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C    C +VCPVD   + E    I  D+CI CG C  +CP +A++
Sbjct: 541 IIAEECRNCGL--CAKVCPVDAITKEEEAHVIDLDKCIKCGSCLDKCPFNAVQ 591



 Score = 40.9 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CP            I  +EC +CG+C   CPVDAI  + E 
Sbjct: 528 CPAGS-CRNLTRYKIIAEECRNCGLCAKVCPVDAITKEEEA 567


>gi|219670089|ref|YP_002460524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219540349|gb|ACL22088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 56

 Score = 64.4 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+   CI C    C   CPV     G++   I  D C DCG C   CP  A  P
Sbjct: 1  MAYVINSECISCG--ACEAECPVGAISAGDDLYVIDADTCTDCGSCAGVCPTGAPNP 55



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +   ECI CG CE ECPV AI    +
Sbjct: 1  MAYVINSECISCGACEAECPVGAISAGDD 29


>gi|330828778|ref|YP_004391730.1| formate dehydrogenase iron-sulfur subunit [Aeromonas veronii B565]
 gi|328803914|gb|AEB49113.1| Formate dehydrogenase iron-sulfur subunit [Aeromonas veronii B565]
          Length = 219

 Score = 64.4 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A +       
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYHTDDGIVLHNKDLCIGCGYCLFACPFGAPQFPKTAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GDRGKMD 119


>gi|257065141|ref|YP_003144813.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256792794|gb|ACV23464.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 209

 Score = 64.4 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY V+  C  C    CVE CPV     +E    +   P+ CI CG C   CP  A + DT
Sbjct: 60  TYYVSSACNHCATPACVEACPVGTMTKHEDTGLVYNDPETCIGCGSCVNACPYGAPQVDT 119

Query: 60  E 60
           E
Sbjct: 120 E 120


>gi|221636035|ref|YP_002523911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157849|gb|ACM06967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
          Length = 510

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV +CP    +   + +     D CI C  C   CP DA+  D
Sbjct: 58  CNHCDDAPCVTICPTKALFRRPDGIVDFDADRCIGCKSCMQACPYDALYID 108


>gi|212637700|ref|YP_002314225.1| formate dehydrogenase, iron-sulfur subunit [Shewanella
           piezotolerans WP3]
 gi|212559184|gb|ACJ31638.1| Formate dehydrogenase, iron-sulfur subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C+ VCP +CFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 53  ISIACMHCSDAPCMAVCPANCFYKTEDGIVLHDKDTCIGCGYCLYACPFGAPQF 106


>gi|257439152|ref|ZP_05614907.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257198403|gb|EEU96687.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 528

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  ++CI CG C   CP +AI     P
Sbjct: 132 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQEKCIKCGRCATVCPYNAIVKTERP 188



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 21/107 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDE----------CIDCGVCEPE 49
           E CI C    C  VCP +   + E          AIH DE          C+ CG C   
Sbjct: 165 EKCIKCG--RCATVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 222

Query: 50  CPVDAIKPDTEPGL--ELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           CP  AI    +     + + + +  YA   P    +  SL SA K+ 
Sbjct: 223 CPFGAIADKGQIYQLIQGFNRGDRIYALVAPAFVNQFPSLASAGKLK 269


>gi|315651987|ref|ZP_07904989.1| ferredoxin [Eubacterium saburreum DSM 3986]
 gi|315485816|gb|EFU76196.1| ferredoxin [Eubacterium saburreum DSM 3986]
          Length = 55

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    +G+    I  D CIDCG C   CP +AI
Sbjct: 1  MAYTITDKCVSCG--TCEGECPVSAISQGDTQYNIDADACIDCGTCASVCPTEAI 53


>gi|163841886|ref|YP_001626291.1| ferredoxin--NADP reductase [Renibacterium salmoninarum ATCC
          33209]
 gi|162955362|gb|ABY24877.1| ferredoxin--NADP reductase [Renibacterium salmoninarum ATCC
          33209]
          Length = 472

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKP---DTEPGLELWLKINSEYATQWPNITTKKESLP 88
           L I P  CID G C   CPVDAI P         + + KIN++Y     +     +  P
Sbjct: 1  MLYIDPKSCIDFGACVDACPVDAIFPIESLLAGPKKAYPKINADYFDAKADPAENVDPAP 60

Query: 89 SAAKMD 94
          +    +
Sbjct: 61 NFHTWN 66


>gi|119988|sp|P00198|FER_CLOAC RecName: Full=Ferredoxin
 gi|157831050|pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin
          From Clostridium Acidurici At 1.84 Angstroms Resolution
 gi|157834957|pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
          Length = 55

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+ E CI C    C   CPV+    G++   I  D CIDCG C   CPVDA 
Sbjct: 1  AYVINEACISCG--ACEPECPVNAISSGDDRYVIDADTCIDCGACAGVCPVDAP 52



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  + CI CG CEPECPV+AI    +
Sbjct: 2  YVINEACISCGACEPECPVNAISSGDD 28


>gi|308051293|ref|YP_003914859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633483|gb|ADN77785.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 193

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF +  + +  H  D+CI CG C   CP  A         
Sbjct: 54  ISVACMHCSDAPCMAVCPADCFEQTADGIIRHSKDKCIGCGYCLYACPFGAP-------- 105

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAA 91
             + K  +  A    +  T     P A 
Sbjct: 106 -QFPKQTAFGARGKMDKCTFCAGGPDAE 132


>gi|325474291|gb|EGC77479.1| ferredoxin [Treponema denticola F0402]
          Length = 58

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++  C  C    C   CPV+   E      I  D CI CG C   CPV+AI  +
Sbjct: 3  MAYKISNECTNC--AACESECPVNAISEAGGKHVIDADTCISCGACAGVCPVEAISEE 58


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 646

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +T+ CI C    C   CPVDC   E +    I  ++C  CG C   CPVDAI
Sbjct: 219 TITKKCIGCG--SCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +CI CG C+  CPVD I  D E   +  +  N
Sbjct: 223 KCIGCGSCKRACPVDCI--DGELKKQHNIDYN 252



 Score = 33.6 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL 33
           C  C    C+  CPVD    G N +
Sbjct: 254 CTHCG--ACISACPVDAITAGNNII 276


>gi|297584891|ref|YP_003700671.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297143348|gb|ADI00106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 230

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  CV  CPV   Y+ E+ L +H  D CI C  C   CP   I  + +   + W 
Sbjct: 60  CNHCDHAPCVMACPVTAMYKDEDGLTLHDADRCIGCKACMTACPYGVISFNKKDPHQYWN 119

Query: 68  KINS 71
           + N+
Sbjct: 120 ENNA 123


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|157377546|ref|YP_001476146.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319920|gb|ABV39018.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A         
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGAP-------- 104

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
             + K  +  +    +  T     P     D  +QKY
Sbjct: 105 -QFPKKGAFGSRGKMDKCTFCAGGPEENHSDAERQKY 140


>gi|127510999|ref|YP_001092196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636294|gb|ABO21937.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 189

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A         
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGAP-------- 104

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
             + K  +  +    +  T     P     D  +QKY
Sbjct: 105 -QFPKKGAFGSRGKMDKCTFCAGGPEENHSDAERQKY 140


>gi|83950408|ref|ZP_00959141.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83838307|gb|EAP77603.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 672

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV TE   C   +      T C+++CP        + + I P  C  CG C   CP  AI
Sbjct: 284 YVRTEPLLCAHSRAEQTGCTRCLDLCPTGAITPDGDHVTIDPMVCAGCGACSAACPSGAI 343

Query: 56  KPDTEP 61
             D  P
Sbjct: 344 SYDAPP 349



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  +   
Sbjct: 520 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANICPEDAITYEPRL 577

Query: 62  GL 63
            L
Sbjct: 578 DL 579



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 14/51 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN---------FLAIHPDE---CIDCGV 45
           + C+ C    C  +CP D                   ++ +E   CIDCG 
Sbjct: 554 DACLQCGL--CANICPEDAITYEPRLDLTDAALSQTVLNEEEPFACIDCGA 602


>gi|331002353|ref|ZP_08325871.1| ferredoxin [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410169|gb|EGG89603.1| ferredoxin [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 55

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV    +G+    I  D CIDCG C   CP DAI
Sbjct: 1  MAYTITDKCVSCG--TCEGECPVSAISQGDTQFNIDADACIDCGTCASVCPTDAI 53


>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 646

 Score = 64.0 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +T+ CI C    C   CPVDC   E +    I  ++C  CG C   CPVDAI
Sbjct: 219 TITKKCIGCG--SCKRACPVDCIDGELKKQHNIDYNKCTHCGACISACPVDAI 269



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +CI CG C+  CPVD I  D E   +  +  N
Sbjct: 223 KCIGCGSCKRACPVDCI--DGELKKQHNIDYN 252



 Score = 33.6 bits (76), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 2/25 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL 33
           C  C    C+  CPVD    G N +
Sbjct: 254 CTHCG--ACISACPVDAITAGNNII 276


>gi|224536879|ref|ZP_03677418.1| hypothetical protein BACCELL_01755 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521503|gb|EEF90608.1| hypothetical protein BACCELL_01755 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 56

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ ++C+ C    C++ CPV    EG +  AI P+ C DCG C   CP +AI P
Sbjct: 1  MAYVINDSCVACG--TCIDECPVGAISEG-DIYAIDPETCTDCGTCADVCPSEAIHP 54


>gi|170729126|ref|YP_001763152.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814473|gb|ACA89057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGAPQFPKKGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GSRGKMD 119


>gi|330445947|ref|ZP_08309599.1| formate dehydrogenase iron-sulfur subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490138|dbj|GAA04096.1| formate dehydrogenase iron-sulfur subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 205

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ +  H  D CI CG C   CP  A +    P  
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFSHTEDGIVQHNKDLCIGCGYCLFACPFGAPQF---PKQ 109

Query: 64  ELWLK 68
           E + +
Sbjct: 110 EAFAE 114


>gi|303241043|ref|ZP_07327553.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302591468|gb|EFL61206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 56

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +TE CI C    C   CPV C   G++   I    CI+CG C   CPVDA K 
Sbjct: 1  MAYFITEACISCG--ACEPECPVSCISAGDSSYVIDESACIECGACANVCPVDAPKQ 55


>gi|288931637|ref|YP_003435697.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893885|gb|ADC65422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 235

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V + C+ C+   CV+VCPV+  +  ++    I  D CI C  C   CP  A     E
Sbjct: 103 AYFVPKLCMHCEKPPCVKVCPVNATWLTDDGFVLIDEDHCIGCKYCIQACPYGARYFHEE 162


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|225572042|ref|ZP_03780906.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040477|gb|EEG50723.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
          Length = 501

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+  C  C    C+ +CP       + +  I   +CI CG C+  CP DAI   T P
Sbjct: 115 YEVSNICKGCVAHPCMLICPKGAISMVDGYSHIDQTKCIKCGKCKSVCPYDAISHKTRP 173



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-----------------FLAIHPDECIDCG 44
           +++    CI C    C  VCP D                           I  D+C+ CG
Sbjct: 145 SHIDQTKCIKCG--KCKSVCPYDAISHKTRPCERACGVNAITSDQQGRATILNDKCVSCG 202

Query: 45  VCEPECPVDAIKP 57
           +C   CP  AI  
Sbjct: 203 MCMVSCPFGAISD 215


>gi|224371231|ref|YP_002605395.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693948|gb|ACN17231.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 384

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV+ CPV      ++   I+P+ CI CG C   CP  ++       + ++L+
Sbjct: 196 CIGCG--ACVDNCPVKAITLEDDKATINPEVCIGCGECIIRCPTGSVNIRWNQTIPVFLE 253

Query: 69  INSEYATQWPNITTKKE 85
              EY      I+ K++
Sbjct: 254 KMMEYTKG--VISGKED 268



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 39  ECIDCGVCEPECPVDAIKPDTE 60
            CI CG C   CPV AI  + +
Sbjct: 195 TCIGCGACVDNCPVKAITLEDD 216


>gi|255527286|ref|ZP_05394166.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296188356|ref|ZP_06856748.1| ferredoxin [Clostridium carboxidivorans P7]
 gi|255509024|gb|EET85384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296047482|gb|EFG86924.1| ferredoxin [Clostridium carboxidivorans P7]
          Length = 56

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++C+ C    C   CPV+   +G++   I    CIDCG C   CPV A   +
Sbjct: 1  MAYKIEDSCVSCG--TCASECPVNAISQGDSIFVIDESTCIDCGNCANVCPVGAPVQE 56


>gi|291515570|emb|CBK64780.1| 4Fe-4S binding domain [Alistipes shahii WAL 8301]
          Length = 55

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C+ C    C+  CPV+    G +   I  D+CIDCG C   CP +AI  +
Sbjct: 1  MAYKITDSCVACG--SCIGECPVEAISAG-DIYVIDADKCIDCGTCAGVCPSEAIVSE 55


>gi|121535200|ref|ZP_01667015.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306191|gb|EAX47118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 356

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+T+NC  C    C++ CP +   E +    I  ++CI CG C   C  DA+K D
Sbjct: 191 VLTDNCRFC--QKCLKWCPQEAIIEKDGKAYIMTEKCIGCGECLAVCRFDAVKYD 243


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|152979186|ref|YP_001344815.1| dimethylsulfoxide reductase chain B [Actinobacillus succinogenes
           130Z]
 gi|150840909|gb|ABR74880.1| Dimethylsulfoxide reductase chain B [Actinobacillus succinogenes
           130Z]
          Length = 205

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    CV+VCP    ++ E    I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSVSCNHCDDPACVKVCPTGAMHKNEEGFVIVNEETCIGCRYCHMACPYDAPQFDAK 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|99080237|ref|YP_612391.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036517|gb|ABF63129.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 652

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
                T C++ CP        + +AI P  C  CG C   CP  AI  D  P   L+L+I
Sbjct: 277 RQTGCTRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSGAITYDAPPTESLFLRI 336



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     + E+   L    D C+ CG+C   CP DAI
Sbjct: 499 VDTDACTLCL--SCVSLCPSGALGDNEDLPQLRFQEDACLQCGLCANACPEDAI 550


>gi|298528233|ref|ZP_07015637.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511885|gb|EFI35787.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 643

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+++C +C   +CV VCP +    GE    I   +C  CG+C  +CP  AI    EP  E
Sbjct: 474 VSQDCAVCL--NCVLVCPYNVPRPGEEKAVIDMSQCQACGICAGQCPAAAIDLGLEPRTE 531

Query: 65  L 65
           L
Sbjct: 532 L 532


>gi|253702471|ref|YP_003023660.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251777321|gb|ACT19902.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. M21]
          Length = 759

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +T++C  C    CV  CPV      +++  I P+ CI CG C   CP  A
Sbjct: 6  TITDHCRKC--YSCVRSCPVKAIKVEKSYTEIIPERCIGCGNCMSHCPQHA 54


>gi|149191930|ref|ZP_01870162.1| formate dehydrogenase, iron-sulfur subunit [Vibrio shilonii AK1]
 gi|148834235|gb|EDL51240.1| formate dehydrogenase, iron-sulfur subunit [Vibrio shilonii AK1]
          Length = 202

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|310642487|ref|YP_003947245.1| glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
 gi|309247437|gb|ADO57004.1| Glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
          Length = 209

 Score = 64.0 bits (155), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TYV  + C  C++  C   CPV    + +  + I  D CI C  C   CP  AI+
Sbjct: 79  TYVPVQ-CRHCENAPCAHACPVQAIRQEDGVVMIDEDRCIGCTSCVLACPFGAIE 132


>gi|127510995|ref|YP_001092192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636290|gb|ABO21933.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 196

 Score = 63.6 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A + 
Sbjct: 53  ISVACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGAPQF 106


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 63.6 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C  VCPV+    E +    I  ++C+ CG C   CPV AI
Sbjct: 549 CIGC--TKCARVCPVNAITGEIKKPHVIDAEKCVKCGACAEACPVKAI 594



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C    CV +              I P +CI C  C   CPV+AI  + +   
Sbjct: 530 KCPAGACVALT----------SFVIDPAKCIGCTKCARVCPVNAITGEIKKPH 572


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score = 63.6 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           TY +T+ CI C  T C  VCP+D           I  + CI CG C   C   AI
Sbjct: 539 TYSITDKCIGC--TACARVCPIDAITGTVKHRHEIDNEICIKCGACYETCKFGAI 591



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           D+CI C  C   CP+DAI    +   E+  +I
Sbjct: 544 DKCIGCTACARVCPIDAITGTVKHRHEIDNEI 575


>gi|295100394|emb|CBK97939.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 517

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V++ C  C    C+EVCP            I  ++CI CG C   CP +AI     P
Sbjct: 121 VSDLCQGCLAHPCMEVCPKKAITWESGRSTIDQEKCIKCGRCVGVCPYNAIVKTERP 177



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDE----------CIDCGVCEPE 49
           E CI C    CV VCP +   + E          AIH DE          C+ CG C   
Sbjct: 154 EKCIKCG--RCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 212 CPFGAI 217


>gi|117619514|ref|YP_857564.1| formate dehydrogenase iron-sulfur subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560921|gb|ABK37869.1| formate dehydrogenase iron-sulfur subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 207

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCFY  ++ + +H  D CI CG C   CP  A +       
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFYHTDDGIVLHNKDLCIGCGYCLFACPFGAPQFPKTAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GDRGKMD 119


>gi|291528206|emb|CBK93792.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 507

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP D            I  ++CI CG C   C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSYNAIIVQERP 175



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 15/64 (23%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C + C +D     EN  A I  D+C+ CG C   CP
Sbjct: 152 EKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVNCP 211

Query: 52  VDAI 55
             AI
Sbjct: 212 FGAI 215


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|332880702|ref|ZP_08448375.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681336|gb|EGJ54260.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 480

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y VT  C  C    C   CP D  + + E    I  ++CI CG C   CP  AI  
Sbjct: 115 YEVTNLCRGCAARPCYNNCPKDAIHYDSEGKAYIDHEKCISCGRCHQVCPYHAIVY 170



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  E CI C                  C E CPV    + E  +  I P++CI CG C
Sbjct: 146 AYIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKC 205

Query: 47  EPECPVDAIKP 57
              CP  AI  
Sbjct: 206 LNACPFGAIFD 216


>gi|255654361|ref|ZP_05399770.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-23m63]
 gi|296452648|ref|ZP_06894341.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08]
 gi|296880940|ref|ZP_06904887.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07]
 gi|296258529|gb|EFH05431.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08]
 gi|296428053|gb|EFH13953.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07]
          Length = 357

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV  CP       +    I  D C  CG C   CP  A+    E   +++++
Sbjct: 197 CIGCG--KCVNSCPTKAISIVDKKAVIDSDVCYGCGECPTVCPTRAVTIQWESDSDVFVE 254

Query: 69  INSEYA 74
             +EYA
Sbjct: 255 KMAEYA 260



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            +   +CI CG C   CP  AI
Sbjct: 191 VVKEKKCIGCGKCVNSCPTKAI 212


>gi|182415488|ref|YP_001820554.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177842702|gb|ACB76954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 665

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y+  E C  CK   C+ +CP       E +   +I+   C  CG C   CP  +I  + 
Sbjct: 592 AYIAAEECSGCK--SCIGLCPYTAITFDETKQVASINAALCKGCGTCVAACPSGSIHQNL 649

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 650 FEDQQVFSEI 659



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
             +  N   I  +EC  C  C   CP  AI  D     +    IN+    
Sbjct: 585 IEQEPNTAYIAAEECSGCKSCIGLCPYTAITFD---ETKQVASINAALCK 631


>gi|304382205|ref|ZP_07364713.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336670|gb|EFM02898.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 55

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +C+ C    C++ CPV    EGE   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCVACG--TCIDECPVSAISEGE-IYSINPDACTECGACAAVCPSEAI 52


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +T+ CI C  T C +VCP +      +    I+ D CI CG C   C  +AIK
Sbjct: 544 FTITDKCIGC--TACAKVCPTEAILGRVKEKHYIYQDRCIKCGACYNACRFNAIK 596


>gi|310828304|ref|YP_003960661.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612]
 gi|308740038|gb|ADO37698.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612]
          Length = 375

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V+ + C  CK   C ++C ++          I  D+C+ CG C   CP DAI     P
Sbjct: 190 PHVIEKKCRDCKV--CKDICAMNAISY-PEKAVIDHDKCVGCGRCIGICPFDAI---ATP 243

Query: 62  GLELWLKINSEYAT 75
             E +  +N + A 
Sbjct: 244 NDESFDVLNKKMAE 257


>gi|330996166|ref|ZP_08320056.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329573670|gb|EGG55261.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 480

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y VT  C  C    C   CP D  + + E    I  ++CI CG C   CP  AI  
Sbjct: 115 YEVTNLCRGCAARPCYNNCPKDAIHYDSEGKAYIDHEKCISCGRCHQVCPYHAIVY 170



 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            Y+  E CI C                  C E CPV    + E  +  I P++CI CG C
Sbjct: 146 AYIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKC 205

Query: 47  EPECPVDAIKP 57
              CP  AI  
Sbjct: 206 LNACPFGAIFD 216


>gi|330997493|ref|ZP_08321342.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
 gi|329570524|gb|EGG52248.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
          Length = 54

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++C+ C    C++ CPV    EGE    I+ D C +CG C   CP  AI
Sbjct: 1  MAYVIGDDCVACG--TCIDECPVGAISEGE-KYVINADACTECGTCADVCPSGAI 52


>gi|313887884|ref|ZP_07821563.1| ferredoxin [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846050|gb|EFR33432.1| ferredoxin [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 56

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M YV+ ++CI C    C   CPV C  EG +  +I   +CIDCG C   CPV A  P+ 
Sbjct: 1  MAYVINDSCIACG--ACQPECPVGCISEG-DIYSIDESQCIDCGSCAAVCPVGAPNPED 56


>gi|260768419|ref|ZP_05877353.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio furnissii CIP
           102972]
 gi|260616449|gb|EEX41634.1| formate dehydrogenase-O iron-sulfur subunit [Vibrio furnissii CIP
           102972]
 gi|315180130|gb|ADT87044.1| formate dehydrogenase, iron-sulfur subunit [Vibrio furnissii NCTC
           11218]
          Length = 202

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQSAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|315651089|ref|ZP_07904123.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315486679|gb|EFU77027.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 207

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++CI C    CVEVCP DC  +      I    C+ CG C   C V A+
Sbjct: 154 YFITDDCIGCG--RCVEVCPQDCINQENIPYVIENKHCLHCGNCLTVCSVGAV 204



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEP 61
               D+CI CG C   CP D I  +  P
Sbjct: 154 YFITDDCIGCGRCVEVCPQDCINQENIP 181


>gi|160893574|ref|ZP_02074358.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|163814830|ref|ZP_02206218.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC
          27759]
 gi|156864559|gb|EDO57990.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|158449769|gb|EDP26764.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC
          27759]
          Length = 56

 Score = 63.6 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++CI C    C   CPV    +      I   +CI CG C   CPV  I  +
Sbjct: 1  MAFVIGDSCIGCG--SCAGSCPVGAISDNGGVFVIDGSQCISCGACAGSCPVGTISEE 56


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|160935281|ref|ZP_02082663.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441639|gb|EDP19339.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
          Length = 507

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+ C  C    C EVCP D            I+ D+CI CG C   C   AI     P
Sbjct: 116 FVTDGCQGCLAHPCEEVCPKDAIKLDRTNGRSHINDDKCIKCGRCADVCSYKAIIIQERP 175



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
           +++  + CI C                  C   C +D     EN  A I  D+C+ CG+C
Sbjct: 147 SHINDDKCIKCGRCADVCSYKAIIIQERPCAAACGMDAISTDENGKADIDYDKCVSCGMC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|301061526|ref|ZP_07202288.1| anaerobic dimethyl sulfoxide reductase chain B family protein
           [delta proteobacterium NaphS2]
 gi|300444334|gb|EFK08337.1| anaerobic dimethyl sulfoxide reductase chain B family protein
           [delta proteobacterium NaphS2]
          Length = 149

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C EVCP +  Y+ ++ + +  PD+CI CG C  ECP  AI  D E G
Sbjct: 59  CRHCDDPPCAEVCPEEIIYKRDDGIVVLDPDKCIGCGSCIDECPYGAIVFDHENG 113


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSACPVGAI 628


>gi|114763310|ref|ZP_01442734.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544108|gb|EAU47118.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 638

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV TE   C   +      T C+++CP        + +++ P  C  CG C   CP  AI
Sbjct: 251 YVRTEPLLCAHSRAGQVGCTSCLDLCPTGAISPDGDHVSVDPMICAGCGACSSACPSGAI 310

Query: 56  KPDTEPGLELW 66
             D  P    +
Sbjct: 311 SYDAPPVDLTF 321



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  +
Sbjct: 487 VDQDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAIAYE 541


>gi|54309047|ref|YP_130067.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum SS9]
 gi|46913479|emb|CAG20265.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum SS9]
          Length = 205

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A +   E   
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFEQTEDGIVRHDKDLCIGCGYCLFACPFGAPQFPKEDAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 AERGKMD 119


>gi|110802004|ref|YP_699826.1| [Fe] hydrogenase [Clostridium perfringens SM101]
 gi|110682505|gb|ABG85875.1| [Fe] hydrogenase [Clostridium perfringens SM101]
          Length = 490

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C  +          I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFEAINFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 193 DCPFGAI 199


>gi|90413855|ref|ZP_01221842.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum 3TCK]
 gi|90325166|gb|EAS41669.1| putative formate dehydrogenase, iron-sulfur subunit [Photobacterium
           profundum 3TCK]
          Length = 205

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF + E+ +  H  D CI CG C   CP  A +   E   
Sbjct: 53  ISVACMHCSDAPCMAVCPADCFEQTEDGIVRHDKDLCIGCGYCLFACPFGAPQFPKEDAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 AERGKMD 119


>gi|298498401|ref|ZP_07008208.1| formate dehydrogenase [Vibrio cholerae MAK 757]
 gi|297542734|gb|EFH78784.1| formate dehydrogenase [Vibrio cholerae MAK 757]
          Length = 202

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTEDGIVLHNKDLCIGCGYCLFACPFGAPQIPKQAAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|223041221|ref|ZP_03611471.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
 gi|222877513|gb|EEF12644.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
          Length = 213

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C+ C+   C  VCPVDCFY   + + +H  D CI CG C   CP  A +  +E
Sbjct: 61  ACMHCEDAPCSLVCPVDCFYIRADGVVLHDKDICIGCGYCLYACPFGAPQFPSE 114


>gi|187251160|ref|YP_001875642.1| hydrogenase large subunit domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971320|gb|ACC98305.1| Hydrogenase large subunit domain protein [Elusimicrobium minutum
           Pei191]
          Length = 482

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C    C +VCP +   ++ E    I   +C++CG+C   CP  AI     P
Sbjct: 91  YEVTAACRGCIAHRCEQVCPKNAISFDHEQKAHIDKTKCVECGLCAKVCPFSAILSYKRP 150

Query: 62  GLELWLKINS 71
             +    +N+
Sbjct: 151 CEKACKVVNA 160



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 20/72 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF------YEGENFLA------------IHPDECIDC 43
            ++    C+ C    C +VCP           E    +             I   +C+ C
Sbjct: 122 AHIDKTKCVECGL--CAKVCPFSAILSYKRPCEKACKVVNAISMNSTKEAKIDDKKCVSC 179

Query: 44  GVCEPECPVDAI 55
           G C  +CP  AI
Sbjct: 180 GACINQCPFGAI 191


>gi|119989|sp|P00196|FER_CLOBU RecName: Full=Ferredoxin
          Length = 55

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V+ ++C+ C    C   CPV    +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  AFVINDSCVSCG--ACAGECPVSAITQGDTQFVIDADTCIDCGNCANVCPVGAPNQE 55


>gi|325972699|ref|YP_004248890.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
 gi|324027937|gb|ADY14696.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
          Length = 486

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++++ C  C    C+  CP DC         I    CI CG C+  CP  A+
Sbjct: 113 YLISDACRGCFARPCLANCPKDCITFSGGQAHIDESRCIRCGKCKEVCPFHAV 165



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFY-EGENFLAIHPDECIDCGVC 46
            ++    CI C                  C E CPV+      E ++ I    CI CG C
Sbjct: 143 AHIDESRCIRCGKCKEVCPFHAVVHIPVPCEEACPVNAVKKNAEGYVEIDYKLCISCGRC 202

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 203 AMSCPFGAI 211


>gi|296272270|ref|YP_003654901.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096445|gb|ADG92395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 186

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V   C  C    C  VCPV     G++ + +H + CI C +C   CP  AI+P+ E
Sbjct: 51  TVPNICRQCDDAPCANVCPVGALEFGKDSILVHEELCIGCKMCTLVCPFGAIRPEAE 107


>gi|320535768|ref|ZP_08035850.1| ferredoxin [Treponema phagedenis F0421]
 gi|320147378|gb|EFW38912.1| ferredoxin [Treponema phagedenis F0421]
          Length = 56

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++E CI C    C   CPV+   E  +   I    CI CG C   CP  AI  +
Sbjct: 1  MAYKISEECINCG--ACKSECPVNAISEQTDMHVIDAGLCISCGACAEVCPAQAISEE 56



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                +ECI+CG C+ ECPV+AI   T+
Sbjct: 1  MAYKISEECINCGACKSECPVNAISEQTD 29


>gi|254517630|ref|ZP_05129686.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
 gi|226911379|gb|EEH96580.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
          Length = 496

 Score = 63.6 bits (154), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT++C  C    C E C             I+ + C +CG+C+  CP DAI     P
Sbjct: 105 YSVTDSCRNCLAHKCHEACNFGAITYVAGRAYINQELCKECGMCKKACPYDAIAEVMRP 163



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 16/72 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDC--FYEGENFLAIHPDECIDCGV 45
            Y+  E C  C                  C  VCP       + +    I  + C++CG 
Sbjct: 135 AYINQELCKECGMCKKACPYDAIAEVMRPCKRVCPTGALDINQDDRRAMIKEETCVNCGS 194

Query: 46  CEPECPVDAIKP 57
           C   CP  AI  
Sbjct: 195 CMSACPFGAISD 206


>gi|283853706|ref|ZP_06370936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570916|gb|EFC18946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 378

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C   +CV VCPV      +   AI    CI CG C   CP  A+  D    +
Sbjct: 199 VDAKKCIGCG--ECVAVCPVGAATMADRKAAIDKSSCIGCGECLTVCPKKAMSIDWHTEI 256

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 257 VPFMERMVEYA 267



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDA 54
            A+   +CI CG C   CPV A
Sbjct: 197 FAVDAKKCIGCGECVAVCPVGA 218


>gi|238750629|ref|ZP_04612129.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
 gi|238711277|gb|EEQ03495.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
          Length = 205

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|301064440|ref|ZP_07204859.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441450|gb|EFK05796.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 235

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V TE CI C+   C+E C ++     ++   I+ D CI CG+C   CP DA+  +  P
Sbjct: 139 ARVDTETCIGCE--TCLERCQMEALRMEDDHAVINRDRCIGCGLCVSTCPSDALHMERRP 196

Query: 62  GL 63
           G 
Sbjct: 197 GE 198


>gi|237752044|ref|ZP_04582524.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376611|gb|EEO26702.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 209

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C +VCPVDCFY   + + +H    CI CG C   CP  A +       
Sbjct: 63  VSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQFPKNGVF 122

Query: 64  ELWLKIN 70
           E    ++
Sbjct: 123 ESRGAMD 129


>gi|163740593|ref|ZP_02147987.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386451|gb|EDQ10826.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 629

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV TE   C   +      T C+++CP        + ++I P  C  CG C   CP  AI
Sbjct: 240 YVRTEPLLCAHSRAGQTGCTRCLDICPTGAISPAGDHVSIDPMICAGCGSCASLCPSGAI 299

Query: 56  KPDTEPGLELWLKI 69
             D  P   L  +I
Sbjct: 300 TYDAPPTDALMRRI 313



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V ++NC LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  ++  
Sbjct: 476 VSSDNCTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCATICPEDAITYESRL 533

Query: 62  GL 63
            L
Sbjct: 534 NL 535


>gi|254517435|ref|ZP_05129491.1| ferredoxin [Clostridium sp. 7_2_43FAA]
 gi|226911184|gb|EEH96385.1| ferredoxin [Clostridium sp. 7_2_43FAA]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + ++C+ C    C   CPV+   +G+    I  D CIDCG C   CPV A 
Sbjct: 1  MAFKIEDSCVNCG--ACAAECPVNAISQGDTQFVIDEDTCIDCGNCANVCPVGAP 53


>gi|149915672|ref|ZP_01904198.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810564|gb|EDM70407.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 632

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + C  ++C+++CP          + I P  C  CG C   CP  AI  D       + +I
Sbjct: 257 VGC--SNCLDICPTGAIIPAGEHVTIDPMICAGCGACAARCPSGAITYDAPSPDTTFRRI 314



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           V T+ C LC    CV +CP     E  +   L    D C+ CG+C   CP DAI  +
Sbjct: 479 VDTDACTLCL--SCVSLCPSGALLENPDKPQLRFQEDACLQCGLCANVCPEDAITYE 533


>gi|302339374|ref|YP_003804580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
 gi|301636559|gb|ADK81986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
          smaragdinae DSM 11293]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T++C  C    C   CPV+   E ++   I PD+C  CG C   CPV+AI  D
Sbjct: 1  MAYKITDDCTNCG--ACEAECPVEAISEKDDHRWIDPDQCTSCGTCAEVCPVEAILAD 56



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
                D+C +CG CE ECPV+AI    +   
Sbjct: 1  MAYKITDDCTNCGACEAECPVEAISEKDDHRW 32


>gi|149921106|ref|ZP_01909564.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
 gi|149817993|gb|EDM77452.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
          Length = 820

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG---L 63
           +C  CK+  C+  CP             I  + C  CG C   CP + I+          
Sbjct: 366 SCQHCKNPSCMLDCPTGAVGRDPEGEVFIREELCTGCGACAKACPWENIRMAPRGPSSAQ 425

Query: 64  ELWLKINSEYATQ--------WPNITTKKES 86
           + W +   E A +        +P + TK +S
Sbjct: 426 QRWGEPLREAAERKGMDLLAMFPEVATKCDS 456



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 35/104 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-----------------------NFLAIHPD---EC 40
           E C  C    C + CP +                             + LA+ P+   +C
Sbjct: 397 ELCTGCG--ACAKACPWENIRMAPRGPSSAQQRWGEPLREAAERKGMDLLAMFPEVATKC 454

Query: 41  IDCGV-----CEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
             C       C   CP +AI          + ++ +      P+
Sbjct: 455 DSCRAYEAPACVQSCPTEAIVRLEPE--RDFGEVAAFLGVDAPD 496


>gi|296533719|ref|ZP_06896269.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957]
 gi|296265941|gb|EFH12016.1| formate dehydrogenase [Roseomonas cervicalis ATCC 49957]
          Length = 198

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C  VCPV CFY   + + +H  D CI CG C   CP  A + 
Sbjct: 51  ISMACMHCTDAPCAAVCPVSCFYTTADAIVLHDKDLCIGCGYCFYACPFGAPQY 104


>gi|322419467|ref|YP_004198690.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Geobacter sp. M18]
 gi|320125854|gb|ADW13414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M18]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M +++++ CI C    C + CPV+   E  +   I  D CIDCG C   CPV AI P
Sbjct: 1  MAHIISDECINCG--ACDDSCPVNAISEAGSKRTIAADTCIDCGACVDTCPVSAIAP 55


>gi|164687084|ref|ZP_02211112.1| hypothetical protein CLOBAR_00710 [Clostridium bartlettii DSM
          16795]
 gi|164603969|gb|EDQ97434.1| hypothetical protein CLOBAR_00710 [Clostridium bartlettii DSM
          16795]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y++ + CI C    C   CPV+C   G++   I  D CI+CG C   CPV+A   +
Sbjct: 1  MAYIIGDACISCG--ACESECPVECISAGDDKYVIDADSCIECGSCADVCPVEAPCAE 56



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             I  D CI CG CE ECPV+ I    +
Sbjct: 1  MAYIIGDACISCGACESECPVECISAGDD 29


>gi|219856694|ref|YP_002473816.1| hypothetical protein CKR_3351 [Clostridium kluyveri NBRC 12016]
 gi|219570418|dbj|BAH08402.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 57

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CPV+C  +G+    I    CIDCG C   CPV A 
Sbjct: 1  MAYKITDACMNCG--ACASECPVECISQGDTQFLIDDGTCIDCGSCASVCPVGAP 53


>gi|197286794|ref|YP_002152666.1| anaerobic reductase component B [Proteus mirabilis HI4320]
 gi|227355015|ref|ZP_03839426.1| anaerobic reductase component B [Proteus mirabilis ATCC 29906]
 gi|194684281|emb|CAR45833.1| putative anaerobic reductase component B [Proteus mirabilis HI4320]
 gi|227164802|gb|EEI49649.1| anaerobic reductase component B [Proteus mirabilis ATCC 29906]
          Length = 213

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    +  EG+  + +  D+C+ CG C   CP  A + D 
Sbjct: 71  AYTLSISCNHCDDPICVKNCPTTAMHKREGDGIVMVDTDKCVGCGACAWSCPYGAPQMDP 130

Query: 60  EPGL 63
           E   
Sbjct: 131 ETKQ 134


>gi|333029771|ref|ZP_08457832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides coprosuis DSM 18011]
 gi|332740368|gb|EGJ70850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides coprosuis DSM 18011]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M YV+ E+CI C    C++ CPV+   EG +  +I  D C DCG C   CP +AI P
Sbjct: 1  MAYVINEDCIACG--TCIDECPVEAISEG-DIYSIDADICTDCGTCADVCPSEAIHP 54


>gi|294788766|ref|ZP_06754007.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483248|gb|EFG30934.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 287

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+    CI C  T C+  CPVD       F+  +  DEC  CG+C   CPVD I  D 
Sbjct: 81  LAYIDESVCIGC--TACIRACPVDAIMGASKFMHTVLTDECTGCGLCVAPCPVDCI--DL 136

Query: 60  EPGLELWLKINSEYATQ 76
               + +L  N   A+Q
Sbjct: 137 IDVKDEFLPRNHYLASQ 153


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           TY +T+ CI C  T C  VCP+D           I+ + CI CG C   C   AI
Sbjct: 539 TYSITDKCIGC--TACARVCPIDAITGTVKHRHEINNEICIKCGACYETCKFGAI 591



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           D+CI C  C   CP+DAI       ++   +IN+E
Sbjct: 544 DKCIGCTACARVCPIDAI----TGTVKHRHEINNE 574


>gi|288925659|ref|ZP_06419591.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|315606445|ref|ZP_07881460.1| ferredoxin [Prevotella buccae ATCC 33574]
 gi|288337597|gb|EFC75951.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|315251851|gb|EFU31825.1| ferredoxin [Prevotella buccae ATCC 33574]
          Length = 55

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV    EG +  +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCIDECPVGAISEG-DIYSINPDACTECGTCADVCPNEAI 52


>gi|254503333|ref|ZP_05115484.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439404|gb|EEE46083.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 652

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 4   VVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C   +        C+++CP        + + I P  C  CG+C   CP  A+  D
Sbjct: 267 VNEDLCAHSRAQKTGCNRCLDLCPTGAITPAGDHITIDPMVCAGCGMCSAACPSGAVSYD 326

Query: 59  TEPGLELWLKINSEYATQW 77
                 ++ +I    AT W
Sbjct: 327 APTPQHVFKRI-ETLATTW 344



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           + C LC    CV +CP     E  +   L    D C+ CG+C   CP  A
Sbjct: 504 DACTLCL--SCVSLCPSGALKENPDQPQLRFQEDACLQCGICTNICPESA 551


>gi|327400615|ref|YP_004341454.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316123|gb|AEA46739.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 184

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +   C+ C    C++VCP+D  Y+  + +  ++ D CI CG C   CP  A + +
Sbjct: 51  IPMPCMHCSDPACLKVCPMDAIYKRSDGIVLVNKDNCIGCGYCSYACPFGAPQFE 105


>gi|224373329|ref|YP_002607701.1| formate dehydrogenase subunit B [Nautilia profundicola AmH]
 gi|223588850|gb|ACM92586.1| formate dehydrogenase subunit B [Nautilia profundicola AmH]
          Length = 198

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C +VCPVDCFY  E+ + +H  D+CI CG C   CP  A +   +   
Sbjct: 58  ACMHCTDAPCAQVCPVDCFYIREDGIVLHDKDKCIGCGYCLYACPFGAPQFPRDGAF 114


>gi|157830634|pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
          Length = 55

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + ++C+ C    C   CPV+   +G++   I  D CIDCG C   CPV A   +
Sbjct: 1  AYKIADSCVSCG--ACASECPVNAISQGDSIFVIDADTCIDCGNCANVCPVGAPVQE 55


>gi|330836748|ref|YP_004411389.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta coccoides DSM 17374]
 gi|329748651|gb|AEC02007.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta coccoides DSM 17374]
          Length = 55

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ CI C    C   CPV+   EG +   I  D CIDCG C   CP  AI  +
Sbjct: 1  MAHKITDACIACG--TCQPECPVNAISEG-DIYVIDADACIDCGACASACPTSAIIAE 55


>gi|110680105|ref|YP_683112.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456221|gb|ABG32426.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 651

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C++VCP          +AI P  C  CG C   CP  AI  D  P   ++ ++
Sbjct: 282 CLDVCPTGAITSAGEHVAIDPLICAGCGACSALCPSGAITYDAPPVGSVFSRL 334



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI--KPDT 59
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI  KP  
Sbjct: 498 VDTDACTLCL--SCVSLCPSGALGDNPDNPQLRFQEDACLQCGLCSNICPEQAITLKPQL 555

Query: 60  EPGLELWLK 68
           +     + +
Sbjct: 556 DLTDAAFTQ 564


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C   CPV C     +    I+ ++CI CG C   CPV AI
Sbjct: 577 YEITDKCIGC--TKCARGCPVSCIIGKVKEKHFINQEKCIKCGNCYSVCPVGAI 628


>gi|238786898|ref|ZP_04630699.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
 gi|238725266|gb|EEQ16905.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
          Length = 205

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|300728400|ref|ZP_07061762.1| conserved domain protein [Prevotella bryantii B14]
 gi|299774319|gb|EFI70949.1| conserved domain protein [Prevotella bryantii B14]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C++ CPV    EGE   +I PD C +CG C   CP +AI
Sbjct: 1  MAYVIGDDCIACG--TCIDECPVGAISEGE-KYSIDPDACTECGTCASVCPNEAI 52


>gi|15922102|ref|NP_377771.1| anaerobic dimethyl sulfoxide reductase [Sulfolobus tokodaii str. 7]
 gi|15622890|dbj|BAB66880.1| 391aa long hypothetical anaerobic dimethyl sulfoxide reductase
           [Sulfolobus tokodaii str. 7]
          Length = 391

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++  C  C++  C++VCP +  ++ +   + I+ +ECI CG C+  CP +  K + E
Sbjct: 47  ISIACNHCENPLCMKVCPANAIHKDDMGIVYINGNECIGCGYCQWACPYEEPKFNHE 103


>gi|126734228|ref|ZP_01749975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717094|gb|EBA13958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 643

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV T    C   +      T+C+++CP        + ++I P  C  CG C   CP  AI
Sbjct: 257 YVQTAPLLCAHSRAGQTGCTNCLDLCPTGAISPEGDHVSIDPMICAGCGACSAGCPSGAI 316

Query: 56  KPDTEP 61
             D  P
Sbjct: 317 SYDAPP 322



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T++C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI
Sbjct: 491 VNTDSCTLCL--SCVSLCPSGALGDNPDKPQLRFQEDACLQCGLCVQICPEDAI 542



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 14/50 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDE---CIDCG 44
           + C+ C    CV++CP D               N   ++ +E   C++CG
Sbjct: 525 DACLQCGL--CVQICPEDAITLAPRLDLTDAALNQTVLNEEEPFACVECG 572


>gi|323492673|ref|ZP_08097817.1| formate dehydrogenase, iron-sulfur subunit [Vibrio brasiliensis LMG
           20546]
 gi|323313048|gb|EGA66168.1| formate dehydrogenase, iron-sulfur subunit [Vibrio brasiliensis LMG
           20546]
          Length = 202

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCP DCF   E+ + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCKAVCPADCFEHTEDGIVLHNKDLCIGCGYCLFACPFGAPQFPKQASF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 604

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
            + +T++CI C    C + CPV      +  + I   +EC+ CG+C   C  DAI 
Sbjct: 530 AFSITDDCIGCGV--CKKSCPVGAISGDKKEIHIIDQEECVKCGMCVSACKFDAIH 583



 Score = 40.9 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           D+CI CGVC+  CPV AI  D + 
Sbjct: 535 DDCIGCGVCKKSCPVGAISGDKKE 558


>gi|42527242|ref|NP_972340.1| ferredoxin, 2(4Fe-4S) [Treponema denticola ATCC 35405]
 gi|41817666|gb|AAS12251.1| ferredoxin, 2(4Fe-4S) [Treponema denticola ATCC 35405]
          Length = 56

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++  C  C    C   CPV+   E      I  D CI CG C   CPV+AI  +
Sbjct: 1  MAYKISNECTNC--AACESECPVNAISEAGGKHVIDADTCISCGACAGVCPVEAISEE 56


>gi|239908207|ref|YP_002954948.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798073|dbj|BAH77062.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 375

 Score = 63.2 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C   +CV VCPV           I    CI CG C   CP  A+  D    +  +++
Sbjct: 202 CIGC--AECVAVCPVGAATMQGKKAVIDKATCIGCGECLTVCPKKAMSIDWRTEIVPFME 259

Query: 69  INSEYA 74
              EYA
Sbjct: 260 RMVEYA 265



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDA 54
             + P +CI C  C   CPV A
Sbjct: 195 FVVEPKKCIGCAECVAVCPVGA 216


>gi|294674586|ref|YP_003575202.1| ferredoxin [Prevotella ruminicola 23]
 gi|294473796|gb|ADE83185.1| putative ferredoxin [Prevotella ruminicola 23]
          Length = 55

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C   CPV+   EGE   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGDDCIACG--TCQGECPVEAISEGE-KYSINPDLCTECGTCASVCPSEAI 52


>gi|119355969|ref|YP_910613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119353318|gb|ABL64189.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 517

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y     C  C    CV +CPV+   + E+ +       CI C  C   CP +A+  D E
Sbjct: 51  YFTVLRCNHCAEPPCVAICPVEALQKREDGIVDFDGRRCIGCKACAQACPYNALYIDPE 109



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 23/74 (31%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECPVDA 54
           CI CK   C + CP +        L I P+     +C  C           C   CP  A
Sbjct: 89  CIGCK--ACAQACPYNA-------LYIDPETHTSAKCNYCAHRKEVGLQPACVAICPQQA 139

Query: 55  IKPDTEPGLELWLK 68
           I           + 
Sbjct: 140 IVSGDLDDPSSKIA 153



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 32 FLAIHPDECIDCGVCEPECPVD 53
             I   +CI C  C   C  +
Sbjct: 4  GFVIDARKCIGCHACTVACKSE 25


>gi|332973049|gb|EGK10986.1| iron-sulfur cluster-binding protein [Kingella kingae ATCC 23330]
          Length = 285

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I    +P  E +L
Sbjct: 79  CIGC--TACIRACPVDAIMGASKLMHTVLADECTGCGLCVAPCPVDCIY--LQPTKETYL 134



 Score = 40.5 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 74 IDEAVCIGCTACIRACPVDAI 94


>gi|257790220|ref|YP_003180826.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830340|ref|ZP_08163797.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|257474117|gb|ACV54437.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487807|gb|EGC90245.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 215

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +   C+ C++  CV VCPV   Y G++ +  I  D CI C  C   CP  A
Sbjct: 59  IPRPCMQCENPACVSVCPVSATYRGDDGIVVIDADRCIGCKYCIAACPYGA 109


>gi|291520273|emb|CBK75494.1| 4Fe-4S binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 56

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++C+ C    C   CPV    +G++   I    C++CG C   CP  AI
Sbjct: 1  MAYVISDSCVSCG--TCEPECPVGAISQGDSQFQIDETACVECGTCAGVCPTGAI 53


>gi|253580083|ref|ZP_04857350.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848602|gb|EES76565.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 303

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +E C  CK     + CPV      +  L I P+ECI CG C+ +CP  A+ P+ + G ++
Sbjct: 180 SEKCRGCKKCQIEKSCPVHVPKLVDGKLYIDPEECIHCGRCKGKCPFGAV-PEYQNGYKI 238

Query: 66  WL 67
           ++
Sbjct: 239 YI 240


>gi|126459018|ref|YP_001055296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126248739|gb|ABO07830.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 275

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           NC+ C    C   CP           + I+ D CI CG CE  CP +  K
Sbjct: 91  NCLHCVDAPCARACPAGAIVTTPEGAVVINKDLCIGCGYCENACPFNVPK 140



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 8/53 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID------CGVCEPECPVD 53
           + CI C +  C   CP +   +G++        C+D         C   CP  
Sbjct: 122 DLCIGCGY--CENACPFNVPKKGQDGKYYKCTFCVDRIQNGRAPACVEVCPTG 172


>gi|295111871|emb|CBL28621.1| Uncharacterized conserved protein [Synergistetes bacterium SGP1]
          Length = 203

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + ENCI C    C  VCP D    G  F AI    C+ CG C   CPV AI+
Sbjct: 151 YHIMENCIGCG--TCQAVCPQDAISSGTPF-AIDESHCLQCGNCAENCPVKAIE 201



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI CG C+  CP DAI   T 
Sbjct: 155 ENCIGCGTCQAVCPQDAISSGTP 177


>gi|187776781|ref|ZP_02993254.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
 gi|187775440|gb|EDU39242.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
          Length = 497

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FTVTEACRGCIQHKCMEVCSAKALARINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKRVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMGACPFGAISD 205


>gi|168187953|ref|ZP_02622588.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|169294213|gb|EDS76346.1| conserved domain protein [Clostridium botulinum C str. Eklund]
          Length = 57

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + ++C+ C    C   CPV    +G++   I    CIDCG C   CPV AI
Sbjct: 1  MAFKIGDSCVSCG--SCASECPVGAISQGDSQFDIDASACIDCGNCANVCPVGAI 53


>gi|158321482|ref|YP_001513989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158141681|gb|ABW19993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 56

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++E+CI C    C   CPV     G+    I  D CI+CG C   CPVDA KP+
Sbjct: 1  MAYKISEDCISCG--ACEPECPVSVISAGDTQYVIDADGCIECGACANVCPVDAPKPE 56


>gi|51246839|ref|YP_066723.1| formate dehydrogenase, iron-sulfur chain [Desulfotalea psychrophila
           LSv54]
 gi|50877876|emb|CAG37716.1| probable formate dehydrogenase, iron-sulfur chain [Desulfotalea
           psychrophila LSv54]
          Length = 188

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C +VCPVDCFY  E+ + +H  ++CI CG C   CP  A +   +   
Sbjct: 59  ACMHCADAPCQKVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGAPQFPRDGAF 115


>gi|18313624|ref|NP_560291.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18161171|gb|AAL64473.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 232

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++  C  C+ T C  VCP    Y+    +  I  D CI CG C   CP  +        
Sbjct: 64  FISSLCYHCEDTPCQRVCPTGATYKTPEGVVLIDKDLCIGCGYCIIACPYGSRYRPEPHE 123

Query: 63  LEL 65
              
Sbjct: 124 WHE 126


>gi|261403277|ref|YP_003247501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370270|gb|ACX73019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 164

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C    C EVCPV      + ++ ++ D CI CG+C   CP  AI  + + 
Sbjct: 44 CQHCASAPCKEVCPVSAIEHKDGYVYLNEDICIGCGLCALACPFGAISMEDKA 96


>gi|163736984|ref|ZP_02144402.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|161389588|gb|EDQ13939.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
          Length = 649

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV TE   C   +      T C+++CP        + ++I P  C  CG C   CP  AI
Sbjct: 260 YVRTEPLLCAHSRAGQTGCTRCLDICPTGAISPAGDHVSIDPMICAGCGSCASLCPSGAI 319

Query: 56  KPDTEPGLELWLKI 69
             D  P   L  +I
Sbjct: 320 TYDAPPTDALMRRI 333



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++NC LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  +
Sbjct: 496 VSSDNCTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCATICPEDAITYE 550


>gi|291542068|emb|CBL15178.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Ruminococcus bromii L2-63]
          Length = 56

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y ++++CI+C    C + CP D   EG+    I+ D C+DCG C   CPV A + 
Sbjct: 1  MAYTISDDCIMCG--ACADNCPCDAISEGDGKYEINADACVDCGSCAEVCPVGAPQE 55


>gi|255527959|ref|ZP_05394800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296188409|ref|ZP_06856800.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255508353|gb|EET84752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296047030|gb|EFG86473.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 368

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C    C +VCP           ++  D+CI CG C   C   AI  D    +
Sbjct: 190 VQNDKCVGCGQ--CAKVCPEQAITIENRKASVSHDKCIGCGECMTVCKPKAIGMDWSSEM 247

Query: 64  ELWLKINSEYA 74
             +++  +EYA
Sbjct: 248 NPFIERLTEYA 258


>gi|197118659|ref|YP_002139086.1| ferredoxin-like protein [Geobacter bemidjiensis Bem]
 gi|253700567|ref|YP_003021756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
 gi|197088019|gb|ACH39290.1| ferredoxin-related protein [Geobacter bemidjiensis Bem]
 gi|251775417|gb|ACT17998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
          Length = 55

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +++ CI C    C + CPV+   E  +   I  D CIDCG C   CPV AI
Sbjct: 1  MAHTISDECINCG--ACDDSCPVNAISEAGDKRTIAADTCIDCGACVDTCPVSAI 53


>gi|157377550|ref|YP_001476150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319924|gb|ABV39022.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 196

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C    C  VCP +CFY+ E+ L +H  D CI CG C   CP  A           +
Sbjct: 56  ACMHCTDAPCQAVCPANCFYKTEDGLTLHNKDTCIGCGYCLYACPFGAP---------QF 106

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
            K  +  +    +  T     P     D  +QKY
Sbjct: 107 PKKGAFGSRGKMDKCTFCAGGPEETHSDAERQKY 140


>gi|261878703|ref|ZP_06005130.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334710|gb|EFA45496.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 56

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ E+C+ C    C++ CPV    EG +  +I PDEC +CG C   CP +AI
Sbjct: 1  MAYVINEDCVACG--TCIDECPVSAISEG-DIYSIDPDECTECGSCAAVCPQEAI 52


>gi|313679989|ref|YP_004057728.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Oceanithermus
           profundus DSM 14977]
 gi|313152704|gb|ADR36555.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Oceanithermus
           profundus DSM 14977]
          Length = 257

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++C+ C    CVE CP       E  +  +  D CI C  C   CP DAI  D E G
Sbjct: 75  DSCMHCSSAACVEACPTGAVGYREGGVVTVDQDWCIGCRNCVQACPYDAIHYDEEKG 131



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 4   VVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC---------GVCEPECP 51
           VVT   + CI C   +CV+ CP D  +  E    +  D+C  C           C   CP
Sbjct: 101 VVTVDQDWCIGC--RNCVQACPYDAIHYDEEKGVV--DKCTLCYDRVSNGLEPACVKACP 156

Query: 52  VDAIK 56
             A+ 
Sbjct: 157 TGALH 161


>gi|34556486|ref|NP_906301.1| putative formate dehydrogenase iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|34557139|ref|NP_906954.1| formate dehydrogenase subunit [Wolinella succinogenes DSM 1740]
 gi|34557519|ref|NP_907334.1| putative formate dehydrogenase iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|119888|sp|P27273|FDHB_WOLSU RecName: Full=Formate dehydrogenase iron-sulfur subunit
 gi|48508|emb|CAA37990.1| formate dehydrogenase [Wolinella succinogenes]
 gi|34482200|emb|CAE09201.1| PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT [Wolinella
           succinogenes]
 gi|34482855|emb|CAE09854.1| FORMATE DEHYDROGENASE SUBUNIT [Wolinella succinogenes]
 gi|34483236|emb|CAE10234.1| PUTATIVE FORMATE DEHYDROGENASE IRON-SULFUR SUBUNIT [Wolinella
           succinogenes]
          Length = 200

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            C+ C    C +VCPVDCFY   + + +H  ++CI CG C   CP  A + 
Sbjct: 58  ACMHCSDAPCAQVCPVDCFYVRADGIVLHDKEKCIGCGYCLYACPFGAPQF 108


>gi|307130319|ref|YP_003882335.1| hydrogenase 4, 4Fe-4S subunit [Dickeya dadantii 3937]
 gi|306527848|gb|ADM97778.1| hydrogenase 4, 4Fe-4S subunit [Dickeya dadantii 3937]
          Length = 208

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +N + +  + CI C +C   CP  AI P
Sbjct: 51 CRHCEDAPCARVCPVNAIRHQDNAVLLDENTCIGCKLCAIACPFGAITP 99


>gi|110800553|ref|YP_697264.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
 gi|110675200|gb|ABG84187.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
          Length = 490

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 193 DCPFGAI 199


>gi|150018616|ref|YP_001310870.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905081|gb|ABR35914.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 184

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + V   C  C++  C +VCP++     +N + I  + CI C  C   CP  AI+  T+
Sbjct: 54  FTVPVQCRHCENAPCAKVCPINAIKNEDNAIIIDEEICIGCKACAVACPFGAIEMGTK 111


>gi|322832975|ref|YP_004213002.1| glutamate synthase, small subunit [Rahnella sp. Y9602]
 gi|321168176|gb|ADW73875.1| glutamate synthase, small subunit [Rahnella sp. Y9602]
          Length = 659

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 3   YVVTEN-------CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+ +N       C  C+   C++VCP + F    + + +  + CI C  C   CP  AI
Sbjct: 42  HVIRQNDRHSAVLCRQCEDAPCLQVCPTNAFVRRNDSIQLLEERCIGCKTCAVACPFGAI 101


>gi|220904268|ref|YP_002479580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868567|gb|ACL48902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 366

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++CI C    CV  CP       ++   +    CI C  C   CP  AI  D    +E +
Sbjct: 193 DDCIGC--AKCVHSCPQQALSMRDHKSHVETARCIGCFECMTVCPAKAIVIDWATEMEPF 250

Query: 67  LKINSEYA 74
           ++  +EYA
Sbjct: 251 MERMTEYA 258



 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 32  FLAIHPDECIDCGVCEPECPVDA 54
            ++I+ D+CI C  C   CP  A
Sbjct: 187 HVSINKDDCIGCAKCVHSCPQQA 209


>gi|254457148|ref|ZP_05070576.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207085940|gb|EDZ63224.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 202

 Score = 62.9 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
           M + ++  C+ C    C +VCPVDCFY  E+ + +H  + CI C  C   CP  A +   
Sbjct: 53  MEFSLSVACMHCTDAPCEQVCPVDCFYIREDGIVLHNKEVCIGCAYCLYACPFGAPQFPK 112

Query: 60  EPGL 63
           +   
Sbjct: 113 DGAF 116


>gi|269122058|ref|YP_003310235.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
 gi|268615936|gb|ACZ10304.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
          Length = 488

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+NC  C    C++ C        +    I    C  CG C   CP  AI     P
Sbjct: 98  FTVTDNCQNCLTKKCIKSCAFGAISATKKGAYIDKQLCKKCGKCVASCPYHAIVDIERP 156



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            Y+  + C  C                  C + CPVD     EN    I   +CI+CG+C
Sbjct: 128 AYIDKQLCKKCGKCVASCPYHAIVDIERPCKKSCPVDAIEIDENDIAIIDSTKCINCGLC 187

Query: 47  EPECPVDAIKP 57
              CP  AI  
Sbjct: 188 INNCPFGAISD 198


>gi|168205840|ref|ZP_02631845.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
 gi|170662681|gb|EDT15364.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
          Length = 490

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 193 DCPFGAI 199


>gi|39997802|ref|NP_953753.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|39984694|gb|AAR36080.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|298506743|gb|ADI85466.1| ferredoxin-related protein [Geobacter sulfurreducens KN400]
          Length = 56

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M++ ++++C  C    CV+ CPV+      +   I  D CIDCG C   CPV AI
Sbjct: 1  MSHAISDDCTNCG--ACVDSCPVNAIAPAGDKHKIDADTCIDCGACVDTCPVSAI 53


>gi|295092507|emb|CBK78614.1| Iron only hydrogenase large subunit, C-terminal domain [Clostridium
           cf. saccharolyticum K10]
          Length = 507

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP              I  D+CI CG C+  C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGYNAIIIQERP 175



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
           +Y+  + CI C                  C   C +D  +   N  A I  D+C+ CG C
Sbjct: 147 SYIDQDKCIKCGKCKEVCGYNAIIIQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|45359065|ref|NP_988622.1| hypothetical protein MMP1502 [Methanococcus maripaludis S2]
 gi|45047940|emb|CAF31058.1| conserved archaeal protein, pyruvate oxidoreductase-associated
          [Methanococcus maripaludis S2]
          Length = 138

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C+   C+ VCP D   +  + + +HP++C+ C +C   CPV AI+ D
Sbjct: 35 CMHCEDAPCLNVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQID 84


>gi|169343278|ref|ZP_02864288.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
 gi|169298576|gb|EDS80657.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
          Length = 490

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 193 DCPFGAI 199


>gi|309792281|ref|ZP_07686753.1| cyclic nucleotide-binding protein [Oscillochloris trichoides DG6]
 gi|308225822|gb|EFO79578.1| cyclic nucleotide-binding protein [Oscillochloris trichoides DG6]
          Length = 476

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + + C  C    +CVE CP   F   E  + +    C  CG C P CP   +   T+   
Sbjct: 354 ILDACRQCTVGPECVEACPEHAFERTEEGVLLITQRCTGCGACIPACPYQVVSSITQEHF 413

Query: 64  ELWLKINSEYATQWPNITTKKESLPSA 90
           E       E  + W  +  + +  PSA
Sbjct: 414 EP------EALSLWKRLLRRFQPQPSA 434


>gi|295094175|emb|CBK83266.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Coprococcus sp. ART55/1]
          Length = 56

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M +V+ ++CI C    C   CPV    +      I   +CI CG C   CPV  I  +
Sbjct: 1  MAFVIGDSCIGCG--SCAGACPVGAISDNGGVFVIDGSQCISCGACAGSCPVGTIAEE 56


>gi|258515754|ref|YP_003191976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779459|gb|ACV63353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 369

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + CI C    C  VCP         N   I PD CI CG C   CP  AI+ D E  
Sbjct: 190 VNQDKCIGC--AQCSTVCPEKASTLNDNNKAEISPDSCIGCGECLTTCPEKAIEMDWETE 247

Query: 63  LELWLKINSEYA 74
           +   L+  +EYA
Sbjct: 248 IPALLERMTEYA 259



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 32  FLAIHPDECIDCGVCEPECPVDA 54
            + ++ D+CI C  C   CP  A
Sbjct: 187 KMIVNQDKCIGCAQCSTVCPEKA 209


>gi|254475789|ref|ZP_05089175.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214030032|gb|EEB70867.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 649

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV +E   C   +      T C++VCP        + ++I P  C  CG C   CP  AI
Sbjct: 260 YVRSEPLLCAHSRAGQTGCTRCLDVCPTGAISPDGDHVSIDPMICAGCGSCASLCPSGAI 319

Query: 56  KPDTEPGLELWLKI 69
             D  P      +I
Sbjct: 320 TYDAPPTDAQMRRI 333



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++ C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI  +
Sbjct: 496 VASDKCTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPENAISYE 550


>gi|296110006|ref|YP_003616955.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434820|gb|ADG13991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 166

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C EVCPV+  Y  ++++ +  ++CI CG+C   CP  AI  + + 
Sbjct: 44 CQHCRSAPCKEVCPVEAIYFKDSYVYLDLEKCIGCGLCALACPFGAITMEDKA 96


>gi|283796610|ref|ZP_06345763.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
 gi|291076031|gb|EFE13395.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
          Length = 507

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP              I  D+CI CG C+  C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGYNAIIVQERP 175



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
           +Y+  + CI C                  C   C +D  +   N  A I  D+C+ CG C
Sbjct: 147 SYIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + CI C    C + CPVD    GE       I P++CI CG C  +CP D I   + 
Sbjct: 570 VLEDQCIACG--ICAKACPVDAIS-GERKKPPYKIDPEKCIRCGACMEKCPKDVIIRGSI 626

Query: 61  PGLE 64
           PG +
Sbjct: 627 PGFK 630



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CP     +  ++L +  D+CI CG+C   CPVDAI  + +  
Sbjct: 557 CPAGVCKDLLHYLVL-EDQCIACGICAKACPVDAISGERKKP 597


>gi|319425621|gb|ADV53695.1| respiratory arsenate reductase, FeS subunit, ArrB [Shewanella
           putrefaciens 200]
          Length = 234

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           TY+ T  C  C    CV+VCP    ++ +  L + + DECI C  C   CP   I  +T 
Sbjct: 51  TYIPT-LCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISFNTA 109

Query: 61  PGLELW 66
                W
Sbjct: 110 TPHRRW 115


>gi|18311557|ref|NP_563491.1| [Fe] hydrogenase [Clostridium perfringens str. 13]
 gi|168213503|ref|ZP_02639128.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|168217341|ref|ZP_02642966.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
 gi|18146241|dbj|BAB82281.1| probable hydrogenase [Clostridium perfringens str. 13]
 gi|170715055|gb|EDT27237.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|182380626|gb|EDT78105.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
          Length = 490

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 193 DCPFGAI 199


>gi|120599742|ref|YP_964316.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120559835|gb|ABM25762.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 234

 Score = 62.9 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           TY+ T  C  C    CV+VCP    ++ +  L + + DECI C  C   CP   I  +T 
Sbjct: 51  TYIPT-LCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISFNTA 109

Query: 61  PGLELW 66
                W
Sbjct: 110 TPHRRW 115


>gi|330508939|ref|YP_004385367.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
 gi|328929747|gb|AEB69549.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
          Length = 811

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  + CI CK   CV+VCP       ++   +    C  CG C   CPVDAIK     
Sbjct: 572 AYVDPDLCIKCKL--CVDVCPQKAISV-KSPAYVDEAACKGCGSCAAACPVDAIKMRLFS 628

Query: 62  GLELWLKINS--EYATQWPNI 80
             ++  +I +  E   ++P I
Sbjct: 629 DEQILAQIRAATEVKKEFPLI 649



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 19/74 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENFLA-------------IHPDECIDCG 44
           YV    C  C + +C +VCPV+   E     G+                 + P  CI CG
Sbjct: 237 YVDPVLCKGCIN-ECADVCPVEVPNEYDFGIGKRKAIYVPYPQAVPLSACVDPKACIGCG 295

Query: 45  VCEPECPVDAIKPD 58
            C   CP  A+K D
Sbjct: 296 RCVESCPTQAVKLD 309



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
                + PD CI C +C   CP  AI   +  
Sbjct: 569 PTSAYVDPDLCIKCKLCVDVCPQKAISVKSPA 600


>gi|295115323|emb|CBL36170.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SM4/1]
          Length = 507

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    CVEVCP              I  D+CI CG C+  C  +AI     P
Sbjct: 117 VTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGYNAIIVQERP 175



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVC 46
           +Y+  + CI C                  C   C +D  +   N  A I  D+C+ CG C
Sbjct: 147 SYIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|182624288|ref|ZP_02952073.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
 gi|177910506|gb|EDT72879.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
          Length = 490

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAI 55
           +CP  AI
Sbjct: 193 DCPFGAI 199


>gi|224418325|ref|ZP_03656331.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter canadensis MIT 98-5491]
 gi|253827646|ref|ZP_04870531.1| formate dehydrogenase subunit B [Helicobacter canadensis MIT
           98-5491]
 gi|313141855|ref|ZP_07804048.1| formate dehydrogenase iron-sulfur subunit [Helicobacter canadensis
           MIT 98-5491]
 gi|253511052|gb|EES89711.1| formate dehydrogenase subunit B [Helicobacter canadensis MIT
           98-5491]
 gi|313130886|gb|EFR48503.1| formate dehydrogenase iron-sulfur subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 209

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C +VCPVDCFY   + + +H    CI CG C   CP  A +       
Sbjct: 63  VSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQFPKNGVF 122

Query: 64  ELWLKIN 70
           E    ++
Sbjct: 123 ESRGAMD 129


>gi|293607054|ref|ZP_06689397.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
 gi|292814544|gb|EFF73682.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
          Length = 416

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CPVD      N   + PD C  C  C P CP  +I
Sbjct: 18 EICIRCN--TCEETCPVDAITHDSNNYVVDPDICNGCMACVPPCPTGSI 64



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D+ 
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDSN 40


>gi|242241404|ref|YP_002989585.1| oxidoreductase Fe-S binding subunit [Dickeya dadantii Ech703]
 gi|242133461|gb|ACS87763.1| glutamate synthase, small subunit [Dickeya dadantii Ech703]
          Length = 671

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  VCP          + +  ++CI C  C   CP  AI  +T+ G
Sbjct: 56  CRHCEDAPCASVCPTQALVRKNESIQLIQEKCIGCKTCVLACPFGAISVETQQG 109


>gi|229826121|ref|ZP_04452190.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
 gi|229789694|gb|EEP25808.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VT+ C  C    CVEVCP  C           I  D CI CG C   CP  A+     P
Sbjct: 116 FVTDGCQGCLAHPCVEVCPKTCVSLDRTNGRSKIDQDVCIKCGKCAEVCPYHAVIIQERP 175



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 19/66 (28%)

Query: 7   ENCILCKHTDCVEVCP----------------VDCFY-EGENFLAIHPDECIDCGVCEPE 49
           + CI C    C EVCP                +D  + +      I  ++C+ CG C   
Sbjct: 152 DVCIKCG--KCAEVCPYHAVIIQERPCAAACGMDAIHSDVHGKADIDYEKCVSCGQCLVN 209

Query: 50  CPVDAI 55
           CP  AI
Sbjct: 210 CPFGAI 215


>gi|168209817|ref|ZP_02635442.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
 gi|170712096|gb|EDT24278.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
          Length = 490

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++VT+ C  C    C + C             I  ++C +CG C+  CP +AI     P
Sbjct: 100 FIVTDACRGCLAKKCRDSCNFGAISFDNRKCKIDYEKCKECGKCKEVCPYNAIAEVKRP 158



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 20/69 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN------------------FLAIHPDECIDCGVCEP 48
           E C  C    C EVCP +   E +                      I   +CI CG C  
Sbjct: 135 EKCKECG--KCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 49  ECPVDAIKP 57
           +CP  AI  
Sbjct: 193 DCPFGAIMD 201


>gi|121534272|ref|ZP_01666096.1| electron transfer flavoprotein, alpha subunit [Thermosinus
          carboxydivorans Nor1]
 gi|121307042|gb|EAX47960.1| electron transfer flavoprotein, alpha subunit [Thermosinus
          carboxydivorans Nor1]
          Length = 399

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          V+ + C+ C    CV  CP      E +N   I  + C  CG C   CPV AI  + E 
Sbjct: 5  VIKDQCVSCG--ACVSTCPFGAIIMESDNKAFIT-EACTACGACIDACPVGAIIREEEE 60


>gi|327484141|gb|AEA78548.1| Formate dehydrogenase-O, iron-sulfur subunit [Vibrio cholerae
           LMA3894-4]
          Length = 202

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF    + + +H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFVHTADGIVLHNKDLCIGCGYCLFACPFGAPQFPKQTAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 GERGKMD 119


>gi|51245620|ref|YP_065504.1| formate dehydrogenase, beta subunit (iron-sulfur subunit)
           [Desulfotalea psychrophila LSv54]
 gi|50876657|emb|CAG36497.1| probable formate dehydrogenase, beta subunit (iron-sulfur subunit)
           [Desulfotalea psychrophila LSv54]
          Length = 197

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           ++ +C+ C    C+ VCPVD  Y+ ++ + +    +CI CG C   CP  A + 
Sbjct: 51  ISISCMHCADAPCIAVCPVDAIYQRDDGIVLADKKKCIGCGYCFMACPFGAPQF 104


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C  T C+  CPV+C       +  I   +CI CG C   CPVDAI
Sbjct: 577 YEITDKCIGC--TKCLRNCPVNCINGKVKQVHTIDQSKCIKCGACCSGCPVDAI 628


>gi|296109958|ref|YP_003616907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434772|gb|ADG13943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 151

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          YV+ + C+LC    C EVCP +C ++GE  + I+ ++C+ CG C   CP  AIK
Sbjct: 16 YVIKDRCVLCNL--CKEVCPANCIFDGEESVEINKEKCMFCGRCVKVCPTKAIK 67


>gi|271501139|ref|YP_003334164.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Dickeya dadantii Ech586]
 gi|270344694|gb|ACZ77459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech586]
          Length = 208

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C +VCPV+     +N + +  + CI C +C   CP  AI P
Sbjct: 51 CRHCEDAPCAKVCPVNAITHQDNAVLLDENTCIGCKLCAIACPFGAITP 99


>gi|77920137|ref|YP_357952.1| putative ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77546220|gb|ABA89782.1| putative ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 59

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + + +TE+CI C    C + CP+    E  +   I  D C DCG C   CPVDAIK D
Sbjct: 4  LAHTITEDCINCG--ACDDSCPLGAIEEKGDARVIDADACTDCGACVDSCPVDAIKAD 59


>gi|325969146|ref|YP_004245338.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
 gi|323708349|gb|ADY01836.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
          Length = 616

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TE 60
           YV  + C  C     +  CP     E      I P+ C+ C VC   CP DAIKP+   +
Sbjct: 549 YVNPDACKACGICYNLIACPAIVPLE-NRKAWIDPNMCVGCSVCAQVCPYDAIKPEGNVK 607

Query: 61  PGLELWLKI 69
             L  W ++
Sbjct: 608 DWLRKWAEM 616


>gi|148657272|ref|YP_001277477.1| cyclic nucleotide-binding protein [Roseiflexus sp. RS-1]
 gi|148569382|gb|ABQ91527.1| cyclic nucleotide-binding protein [Roseiflexus sp. RS-1]
          Length = 482

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + C  C+   +CVE CP D     E+      D C  CG C P CP  A+
Sbjct: 357 IADACRQCRVGAECVEACPEDAIVWNESGALFITDACNGCGACVPACPYHAV 408


>gi|126697867|ref|YP_001086764.1| putative iron-sulfur-binding protein [Clostridium difficile 630]
 gi|254973963|ref|ZP_05270435.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-66c26]
 gi|255091349|ref|ZP_05320827.1| putative iron-sulfur-binding protein [Clostridium difficile CIP
           107932]
 gi|255099467|ref|ZP_05328444.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-63q42]
 gi|255305324|ref|ZP_05349496.1| putative iron-sulfur-binding protein [Clostridium difficile ATCC
           43255]
 gi|255313007|ref|ZP_05354590.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-76w55]
 gi|255515766|ref|ZP_05383442.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-97b34]
 gi|255648859|ref|ZP_05395761.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-37x79]
 gi|260682075|ref|YP_003213360.1| putative iron-sulfur-binding protein [Clostridium difficile CD196]
 gi|260685673|ref|YP_003216806.1| putative iron-sulfur-binding protein [Clostridium difficile R20291]
 gi|306518976|ref|ZP_07405323.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-32g58]
 gi|115249304|emb|CAJ67117.1| putative iron-sulfur-binding protein [Clostridium difficile]
 gi|260208238|emb|CBA60619.1| putative iron-sulfur-binding protein [Clostridium difficile CD196]
 gi|260211689|emb|CBE01977.1| putative iron-sulfur-binding protein [Clostridium difficile R20291]
          Length = 357

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV  CP       +    I  D C  CG C   CP  A+    E   +++++
Sbjct: 197 CVGCG--KCVNSCPTKAISIVDKKAVIDSDVCYGCGECPTVCPTRAVTIQWESDSDVFVE 254

Query: 69  INSEYA 74
             +EYA
Sbjct: 255 KMAEYA 260



 Score = 33.6 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            +   +C+ CG C   CP  AI
Sbjct: 191 VVKEKKCVGCGKCVNSCPTKAI 212


>gi|308051289|ref|YP_003914855.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
 gi|307633479|gb|ADN77781.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           ++  C+ C    C++VCPV+ F + E+ + +H  E CI CG C   CP  A +   + 
Sbjct: 53  ISVACMHCADAPCMKVCPVNVFSKTEDGIVLHDKERCIGCGYCLYACPFGAPQFPKKA 110


>gi|296272504|ref|YP_003655135.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096678|gb|ADG92628.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 198

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C +VCP DCFY   + + +H  D CI CG C   CP  A +   +   
Sbjct: 59  ISMACMHCADAPCQQVCPTDCFYIRTDGIVLHNKDICIGCGYCLFACPFGAPQFPKDGAF 118


>gi|212550384|ref|YP_002308701.1| ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
          genomovar. CFP2]
 gi|212548622|dbj|BAG83290.1| ferredoxin [Candidatus Azobacteroides pseudotrichonymphae
          genomovar. CFP2]
          Length = 55

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+TE+CI C    C++ CPV+   EG +  +I  + C +CG C   CP +AI
Sbjct: 1  MAYVITEDCIACG--TCIDECPVEAISEG-DIYSIDANNCTECGSCASVCPSEAI 52


>gi|242309248|ref|ZP_04808403.1| fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter pullorum MIT 98-5489]
 gi|239524289|gb|EEQ64155.1| fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter pullorum MIT 98-5489]
          Length = 209

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+  C+ C    C +VCPVDCFY   + + +H    CI CG C   CP  A +       
Sbjct: 63  VSVACMHCADAPCAQVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQFPKNGVF 122

Query: 64  ELWLKIN 70
           E    ++
Sbjct: 123 ESRGAMD 129


>gi|159905554|ref|YP_001549216.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887047|gb|ABX01984.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 167

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|330829820|ref|YP_004392772.1| hydrogenase 4 Fe-S subunit [Aeromonas veronii B565]
 gi|328804956|gb|AEB50155.1| Hydrogenase 4 Fe-S subunit [Aeromonas veronii B565]
          Length = 221

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C++VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 51 CRHCDDAPCIKVCPVEAIRQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|307594818|ref|YP_003901135.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
            distributa DSM 14429]
 gi|307550019|gb|ADN50084.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
            distributa DSM 14429]
          Length = 1226

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 9    CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    CV+ CP             I+P  C  CG C  ECP  A+  D      +  
Sbjct: 1018 CVGCLL--CVKACPYGAIKGEPGKPVTINPAACQGCGSCVGECPYGALDMDLLSDDAILA 1075

Query: 68   KINSEYATQ 76
            ++ +  A +
Sbjct: 1076 QVEAALAEE 1084



 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 15/68 (22%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDE---CIDCGVCEPECPVDA 54
          E CI      CV+ CP+    E         G +++ I P +   C+ CG+CE  CP +A
Sbjct: 23 EMCIG--DELCVKRCPMG-ILELTREEVNPRGYHYVRIKPGKEVDCVACGICEKVCPTNA 79

Query: 55 IKPDTEPG 62
          I  + E  
Sbjct: 80 IYVEHEEE 87



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 35   IHPDECIDCGVCEPECPVDAIKPD 58
            + P +C+ C +C   CP  AIK +
Sbjct: 1013 VDPGKCVGCLLCVKACPYGAIKGE 1036



 Score = 37.4 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 19/71 (26%), Gaps = 27/71 (38%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDEC------ 40
           VT  C  C    C  VCPV    E                       AI PD C      
Sbjct: 207 VTNECTKCGL--CEGVCPVVVPSEYNAGIGLRKAIYLPFPQAEPGIYAIDPDLCLNKPPE 264

Query: 41  -IDCGVCEPEC 50
            I C  C   C
Sbjct: 265 NIACNRCVSVC 275


>gi|212690609|ref|ZP_03298737.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855]
 gi|212666855|gb|EEB27427.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855]
          Length = 582

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI  
Sbjct: 212 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVY 268



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I  ++CI CG C   CP
Sbjct: 249 DTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACP 308

Query: 52  VDAIKP 57
             AI  
Sbjct: 309 FGAIFE 314


>gi|268679442|ref|YP_003303873.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617473|gb|ACZ11838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 199

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C +VCPVDCFY  E+ + +H  ++CI CG C   CP  A +   +   
Sbjct: 57  ACMHCTDAPCEQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGAPQFPRDGAF 113


>gi|254488903|ref|ZP_05102108.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
 gi|214045772|gb|EEB86410.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
          Length = 650

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C+++CP          +AI P  C  CG C   CP  AI  D  P   L+ ++
Sbjct: 281 NCLDLCPTGAITSAGEHVAIDPLICAGCGSCSAVCPSGAITYDAPPVDTLFRRL 334



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI--KPDT 59
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI  KP  
Sbjct: 497 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANICPEQAITLKPQM 554

Query: 60  EPGLELWLKI 69
                 + ++
Sbjct: 555 NLTDAAFTQV 564


>gi|255322093|ref|ZP_05363240.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
 gi|255300791|gb|EET80061.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
          Length = 213

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C+ C+   C  VCPVDCFY   + + +H  D CI CG C   CP  A +   E
Sbjct: 61  ACMHCEDAPCSLVCPVDCFYIRADGVVLHDKDICIGCGYCLYACPFGAPQFPRE 114


>gi|281422556|ref|ZP_06253555.1| conserved domain protein [Prevotella copri DSM 18205]
 gi|281403380|gb|EFB34060.1| conserved domain protein [Prevotella copri DSM 18205]
          Length = 55

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+ ++CI C    C++ CP     EGE   +I+PD C +CG C   CP +AI
Sbjct: 1  MAYVIGDDCIACG--TCIDECPSGAISEGE-KYSINPDLCTECGTCADVCPNEAI 52


>gi|34733215|gb|AAQ81583.1| formate dehydrogenase subunit B [Sulfurospirillum multivorans]
          Length = 200

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C +VCPVDCFY  E+ + +H  ++CI CG C   CP  A +   +   
Sbjct: 57  ACMHCTDAPCEQVCPVDCFYIREDGIVLHDKEKCIGCGYCLYACPFGAPQFPRDGAF 113


>gi|296133064|ref|YP_003640311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031642|gb|ADG82410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 368

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C  T C   CP D     E    I  ++CI CG C   CP  AI  + +   
Sbjct: 190 VDADKCIGC--TKCTHWCPADAITVNEKVARISEEKCIGCGECTVTCPAHAIAINWKTDP 247

Query: 64  ELWLKINSEY 73
           + + +   EY
Sbjct: 248 DDFQEKMVEY 257


>gi|119873478|ref|YP_931485.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674886|gb|ABL89142.1| formate dehydrogenase beta subunit [Pyrobaculum islandicum DSM
           4184]
          Length = 278

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C    C   CPV          + I+ DEC+ CG C+  CP D  K   +
Sbjct: 94  NCMHCVEAPCARACPVGAIKVTPEGAVVINRDECVGCGYCQMACPYDVPKRGDD 147


>gi|288930542|ref|YP_003434602.1| methyl-viologen-reducing hydrogenase subunit delta [Ferroglobus
           placidus DSM 10642]
 gi|288892790|gb|ADC64327.1| methyl-viologen-reducing hydrogenase delta subunit [Ferroglobus
           placidus DSM 10642]
          Length = 777

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV  E CI C    C EVC  +          I P+ C+ CGVC   CP DAI
Sbjct: 569 AYVNEEKCIGC--RICEEVCNFNAVTFENKKAKIDPNACVMCGVCAASCPADAI 620



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 19/79 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV    C  C   DC  VCPV+   E                     + AI  + CI C 
Sbjct: 237 YVDENKCKGCID-DCSSVCPVEVPNEFDYTIGVRKAIYLPIPQSTPLYAAIDWEHCIGCR 295

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   A+  + +P  
Sbjct: 296 LCEKACEPKAVDFNQKPED 314


>gi|150002944|ref|YP_001297688.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482]
 gi|149931368|gb|ABR38066.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482]
          Length = 583

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI  
Sbjct: 212 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVY 268



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I  ++CI CG C   CP
Sbjct: 249 DTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACP 308

Query: 52  VDAIKP 57
             AI  
Sbjct: 309 FGAIFE 314


>gi|22124776|ref|NP_668199.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis KIM
           10]
 gi|45440219|ref|NP_991758.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108808811|ref|YP_652727.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Antiqua]
 gi|108810934|ref|YP_646701.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|145600291|ref|YP_001164367.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides F]
 gi|153947293|ref|YP_001402217.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997629|ref|ZP_02022729.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CA88-4125]
 gi|162418201|ref|YP_001605488.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Angola]
 gi|165925705|ref|ZP_02221537.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936633|ref|ZP_02225200.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010127|ref|ZP_02231025.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213010|ref|ZP_02239045.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399468|ref|ZP_02304992.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421626|ref|ZP_02313379.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423573|ref|ZP_02315326.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467625|ref|ZP_02332329.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           FV-1]
 gi|170025608|ref|YP_001722113.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           YPIII]
 gi|186894170|ref|YP_001871282.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930345|ref|YP_002348220.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CO92]
 gi|229838947|ref|ZP_04459106.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896427|ref|ZP_04511595.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides A]
 gi|229899514|ref|ZP_04514655.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901149|ref|ZP_04516272.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|270489331|ref|ZP_06206405.1| dimethylsulfoxide reductase, chain B [Yersinia pestis KIM D27]
 gi|294505035|ref|YP_003569097.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Z176003]
 gi|5002127|gb|AAD37318.1|AF135170_9 dimethyl sulfoxide reductase subunit B [Yersinia pestis]
 gi|21957598|gb|AAM84450.1|AE013689_5 anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45435075|gb|AAS60635.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774582|gb|ABG17101.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|108780724|gb|ABG14782.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Antiqua]
 gi|115348956|emb|CAL21915.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CO92]
 gi|145211987|gb|ABP41394.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides F]
 gi|149289266|gb|EDM39346.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           CA88-4125]
 gi|152958788|gb|ABS46249.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351016|gb|ABX84964.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           Angola]
 gi|165915282|gb|EDR33892.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922317|gb|EDR39494.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991034|gb|EDR43335.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205797|gb|EDR50277.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960545|gb|EDR56566.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051972|gb|EDR63380.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057743|gb|EDR67489.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752142|gb|ACA69660.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           YPIII]
 gi|186697196|gb|ACC87825.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681874|gb|EEO77967.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Nepal516]
 gi|229687006|gb|EEO79081.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695313|gb|EEO85360.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700501|gb|EEO88532.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Pestoides A]
 gi|262363098|gb|ACY59819.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           D106004]
 gi|262367026|gb|ACY63583.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           D182038]
 gi|270337835|gb|EFA48612.1| dimethylsulfoxide reductase, chain B [Yersinia pestis KIM D27]
 gi|294355494|gb|ADE65835.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           Z176003]
 gi|320016518|gb|ADW00090.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 205

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|309389388|gb|ADO77268.1| putative iron-sulfur protein [Halanaerobium praevalens DSM 2228]
          Length = 416

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E+CI C    C++ CP+D   +  N + I  D C+ CGVC   CP  A
Sbjct: 290 ESCINCD--KCLDACPIDAITKNNNQIKIDQDICLGCGVCVRSCPTKA 335



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 28  EGENFL-AIHPDECIDCGVCEPECPVDAI 55
           E  N+L  ++ + CI+C  C   CP+DAI
Sbjct: 279 ETTNYLPQLNYESCINCDKCLDACPIDAI 307


>gi|227143|prf||1615261A ferredoxin
          Length = 55

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + + C+ C    C   CPVD   +G+    I  D CIDCG C   CPV A   +
Sbjct: 1  AYKILDTCVSCG--ACAAECPVDAISQGDTQFVIDADTCIDCGNCANVCPVGAPVQE 55


>gi|296132292|ref|YP_003639539.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296030870|gb|ADG81638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 261

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C    C+ VC        +N  + I  D CI C  C   CP  AI  D E G
Sbjct: 73  CMHCTEASCMAVCAAGAISRADNGQVVIDRDTCIGCKNCVVACPFGAIGFDEETG 127


>gi|283786991|ref|YP_003366856.1| oxidoreductase [Citrobacter rodentium ICC168]
 gi|282950445|emb|CBG90107.1| putative oxidoreductase [Citrobacter rodentium ICC168]
          Length = 646

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CV  CP        N + +    CI C  C   CP  AI+          L 
Sbjct: 56  CRHCNDAPCVASCPTQALIFANNSVQLTEALCIGCKNCVIACPFGAIEMVANDDEAPLLA 115

Query: 69  INSEYATQWPN 79
              +   Q P+
Sbjct: 116 QKCDLCNQHPS 126


>gi|255067077|ref|ZP_05318932.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
 gi|255048673|gb|EET44137.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
          Length = 282

 Score = 62.5 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            CI C  T C+  CPVD       F+  +  DEC  CG+C P CPVD I  D  P  + +
Sbjct: 79  ACIGC--TACIRACPVDAIMGASKFMHTVISDECTGCGLCLPPCPVDCI--DMIPSEQEY 134

Query: 67  LKINSEYAT 75
           L      + 
Sbjct: 135 LPTARSLSR 143



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 75 IDEAACIGCTACIRACPVDAI 95



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    C+  CPVDC 
Sbjct: 102 MHTVISDECTGCGL--CLPPCPVDCI 125


>gi|188585177|ref|YP_001916722.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349864|gb|ACB84134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 284

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y     C+ C    CV  CP D  Y+ +  L  I    C++CG C   CP +AIK D + 
Sbjct: 90  YFKKNACLHCNEASCVMACPADAIYKDDLGLTQIDNSICVNCGYCVSACPYNAIKYDRKK 149

Query: 62  G 62
           G
Sbjct: 150 G 150


>gi|218779004|ref|YP_002430322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760388|gb|ACL02854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 403

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAI----KPD 58
           V  + CI C    CVE+CP++     ++   I+   CI CG+C P+C    AI    +  
Sbjct: 290 VDADKCIGCNQ--CVEICPMEALSLVDDKAVINHTRCIGCGLCVPKCGKAKAISLKERYG 347

Query: 59  TEPGLELWLKINSEYATQWPNITTKKES 86
            +P  +  L   +E   +   I      
Sbjct: 348 HKPPSKDVLAYAAERIEELKGIQKSLLP 375


>gi|2127911|pir||B64333 formate hydrogenlyase, subunit 2 - Methanococcus jannaschii
          Length = 168

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    C EVCPV      + ++ ++ D CI CG+C   CP  AI  + + 
Sbjct: 48  CQHCASAPCKEVCPVSAIEHKDGYVYLNEDVCIGCGLCALACPFGAILMEDKA 100


>gi|261364486|ref|ZP_05977369.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567418|gb|EFC88978.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
          Length = 282

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            CI C  T C+  CPVD       F+  +  DEC  CG+C P CPVD I  D  P  + +
Sbjct: 79  ACIGC--TACIRACPVDAIMGASKFMHTVISDECTGCGLCLPPCPVDCI--DMIPSEKEY 134

Query: 67  LKINSEYAT 75
           L      + 
Sbjct: 135 LPAARSLSR 143



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 75 IDEAACIGCTACIRACPVDAI 95



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    C+  CPVDC 
Sbjct: 102 MHTVISDECTGCGL--CLPPCPVDCI 125


>gi|257065142|ref|YP_003144814.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792795|gb|ACV23465.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 207

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V+ +C  C +  C++VCP    ++ +N    ++ + CI CG C   CP +A K D E 
Sbjct: 62  YYVSTSCQHCGNPACIKVCPTGAMHKEDNGAVLVNTERCIGCGYCHLSCPYNAPKVDREA 121

Query: 62  GL 63
           G 
Sbjct: 122 GH 123


>gi|310658331|ref|YP_003936052.1| iron-sulfur-binding protein [Clostridium sticklandii DSM 519]
 gi|308825109|emb|CBH21147.1| putative iron-sulfur-binding protein [Clostridium sticklandii]
          Length = 340

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + CI C    CV+ C V+   E +    IH ++C+ C  C   CPV AI  D     
Sbjct: 185 VIEKKCISCGL--CVKKCDVEAI-EMKEKAFIHSEKCVGCAGCIAVCPVGAIVNDW--SE 239

Query: 64  ELWLKINSEYA------------TQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
             + +  +EYA            T   NIT + + +     MD V      + S +P   
Sbjct: 240 VNFKEKLAEYAYAAQKDKDNVYITYLINITKECDCMGQH--MDEVASDIGVFISKDPVAI 297

Query: 112 NT 113
           +T
Sbjct: 298 DT 299


>gi|83312388|ref|YP_422652.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947229|dbj|BAE52093.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 242

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           TYV+   C  C    CV VCPV   F + +  + +  D C+ C  C   CP DA
Sbjct: 90  TYVLPRLCNHCSDPPCVGVCPVGATFQQKDGAVMVDSDRCVGCAYCVQACPYDA 143


>gi|291523456|emb|CBK81749.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           catus GD/7]
          Length = 487

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT NC +C    C+  C             I   +C +CG C   CP +AI     P
Sbjct: 98  VTNNCQMCMAKKCLGACNFGAIKFEGGHAVIDHKKCKECGKCAEACPYNAIADLMRP 154



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 15  TDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
             C   CPVD     E N + I+ ++CI+CG C   CP  A
Sbjct: 153 RPCKRSCPVDAITMDEDNIVVINEEKCINCGQCVINCPFGA 193


>gi|150388648|ref|YP_001318697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149948510|gb|ABR47038.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 56

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + E+CI C    C   CPVD    G++   I  D CIDCG C   CP DA +P
Sbjct: 1  MAYKINESCINCG--ACEPECPVDVITAGDDIYVIEEDGCIDCGACANVCPTDAPQP 55


>gi|259416523|ref|ZP_05740443.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259347962|gb|EEW59739.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 667

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
                T C++ CP        + +AI P  C  CG C   CP  AI  D  P   L+L++
Sbjct: 292 RQTGCTRCLDACPTGAITPNGDSVAIDPMICAGCGACASLCPSSAITYDAPPAESLFLRV 351



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  +
Sbjct: 514 VDQDACTLCL--SCVSLCPPGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAITYE 568


>gi|323484215|ref|ZP_08089584.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323692097|ref|ZP_08106344.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402457|gb|EGA94786.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323503897|gb|EGB19712.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 368

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V+T+ CI C    C   C  D     E   +I PD+C  CG C   CPVDA+    + 
Sbjct: 190 PFVLTDKCIGCG--ACKRNCAHDAISIAEKKASIAPDKCAGCGRCIGVCPVDAVANHCDE 247

Query: 62  GLELWLKINSEYA 74
             ++  K  +EY+
Sbjct: 248 SNDILNKKIAEYS 260


>gi|308051285|ref|YP_003914851.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
 gi|307633475|gb|ADN77777.1| formate dehydrogenase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKP 57
           ++  C+ C    C++VCPV+ F + E+ + +H  E CI CG C   CP  A + 
Sbjct: 53  ISVACMHCSDAPCMKVCPVNVFSKTEDGIVLHDKERCIGCGYCLYACPFGAPQF 106


>gi|218262081|ref|ZP_03476678.1| hypothetical protein PRABACTJOHN_02350 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223610|gb|EEC96260.1| hypothetical protein PRABACTJOHN_02350 [Parabacteroides johnsonii
          DSM 18315]
          Length = 458

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + C+ C  T C+  CP       E   +I    C+DCG C   CP +AI  + +   +++
Sbjct: 15 DRCVGC--THCMTKCPTGAIRIREGKASIRKGWCVDCGECLKACPAEAIYVEQDDFQKIF 72



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D C+ C  C  +CP  AI+
Sbjct: 10 LKIDNDRCVGCTHCMTKCPTGAIR 33


>gi|9651775|gb|AAF91267.1|AF230199_9 pyruvate oxidoreductase cysteine-rich subunit 2 [Methanococcus
          maripaludis]
          Length = 138

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C+   C+ VCP D   +  + + +HP++C+ C +C   CPV AI+ D
Sbjct: 35 CMHCEDAPCLNVCPEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQID 84


>gi|193083887|gb|ACF09566.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-72-G3]
          Length = 490

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  +CP    +  E+ +     D CI C  C   CP DA+  D   G
Sbjct: 78  CNHCEDAPCTTICPTTALFTREDGIVDFDDDRCIGCKSCMQACPYDALYIDPNKG 132



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 23/70 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCG---------VCEPECPV 52
           + CI CK   C++ CP D        L I P++     C  C           C   CPV
Sbjct: 108 DRCIGCK--SCMQACPYDA-------LYIDPNKGTAAKCNYCAHRIEHSYEPSCVVVCPV 158

Query: 53  DAIKPDTEPG 62
           +AI       
Sbjct: 159 EAIISGDLDD 168


>gi|86140247|ref|ZP_01058808.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823050|gb|EAQ43264.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 657

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C++ CP        + ++I P  C  CG C   CP  AI  D       + +I
Sbjct: 289 CLDHCPTSAISSAGDHVSIDPMICAGCGACAALCPSGAITYDAPATDAQFRRI 341



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  ++C LC    CV +CP     +  +   L    + C+ CG+C   CP DAI  +   
Sbjct: 504 VDQDSCTLCL--SCVSLCPSGALGDNPDLPQLRFQEEACLQCGICANTCPEDAISFEPRL 561

Query: 62  GLEL 65
            L+ 
Sbjct: 562 NLDP 565



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 14/51 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN---------FLAIHPDE---CIDCGV 45
           E C+ C    C   CP D                 + +H +E   C++CG 
Sbjct: 538 EACLQCG--ICANTCPEDAISFEPRLNLDPVALSQVVLHEEEPFACVECGA 586


>gi|296272511|ref|YP_003655142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096685|gb|ADG92635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 199

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C+ C    C +VCPVDCFY  E+ + +H   +CI CG C   CP  A +   + 
Sbjct: 53  YSLSIACMHCTDAPCEKVCPVDCFYIREDGIVLHDKHKCIGCGYCLYACPFGAPQFPRDG 112

Query: 62  GLELWLKIN 70
                 +++
Sbjct: 113 AFGTKGEMD 121


>gi|224437316|ref|ZP_03658288.1| putative formate dehydrogenase iron-sulfur subunit [Helicobacter
           cinaedi CCUG 18818]
          Length = 211

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C +VCPVDCFY   + + +H    CI CG C   CP  A + 
Sbjct: 66  ISIACMHCADAPCAKVCPVDCFYIRADGIVLHNKKTCIGCGYCLYACPFGAPQF 119


>gi|134045120|ref|YP_001096606.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132662745|gb|ABO34391.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 167

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|15668439|ref|NP_247237.1| carbon monoxide dehydrogenase iron sulfur subunit CooF2
          [Methanocaldococcus jannaschii DSM 2661]
 gi|37078241|sp|Q57713|FER9_METJA RecName: Full=Uncharacterized ferredoxin MJ0265
 gi|2826268|gb|AAB98252.1| carbon monoxide dehydrogenase, iron sulfur subunit CooF-1 (cooF2)
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 166

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C    C EVCPV      + ++ ++ D CI CG+C   CP  AI  + + 
Sbjct: 46 CQHCASAPCKEVCPVSAIEHKDGYVYLNEDVCIGCGLCALACPFGAILMEDKA 98


>gi|150402671|ref|YP_001329965.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033701|gb|ABR65814.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 167

 Score = 62.1 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|157164783|ref|YP_001467446.1| cytoplasmic membrane protein [Campylobacter concisus 13826]
 gi|112800981|gb|EAT98325.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
          Length = 213

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C+   C  VCPVDCFY   + + +H  D CI CG C   CP  A +   +   
Sbjct: 61  ACMHCEDAPCSLVCPVDCFYIRADGIVLHDKDICIGCGYCLYACPFGAPQFPKDGAF 117


>gi|71279765|ref|YP_268923.1| electron transport complex protein RnfB [Colwellia psychrerythraea
           34H]
 gi|71145505|gb|AAZ25978.1| electron transport complex, RnfABCDGE type, B subunit [Colwellia
           psychrerythraea 34H]
          Length = 189

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +V+ E+CI C  T C++ CPVD        +  I  DEC  C +C   CPVD I+    
Sbjct: 112 AFVIEEDCIGC--TKCIQACPVDAIIGAAKQMHTIIIDECTGCDLCVAPCPVDCIEMREL 169

Query: 61  PG 62
           P 
Sbjct: 170 PD 171


>gi|313672609|ref|YP_004050720.1| tetrathionate reductase beta subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939365|gb|ADR18557.1| tetrathionate reductase beta subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 217

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV+ CPV+  Y+G + L  I  + CI CG C   CP +A   D
Sbjct: 92  CNHCENPPCVKPCPVNATYKGPDGLVVIDDNVCIGCGKCVKACPYNARFLD 142


>gi|317131978|ref|YP_004091292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315469957|gb|ADU26561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 368

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V TE C+ C    C + C  D         +I  + C+ CG C   CP DA++   + 
Sbjct: 190 PHVHTEKCVGCG--TCRKQCAHDAITLTGGKASIDHNRCVGCGRCIGACPTDAVEAPIDE 247

Query: 62  GLELWLKINSEYAT-QWPNITTK 83
             ++   +N + A   W  +  +
Sbjct: 248 ANDI---LNCKMAEYTWAVLHGR 267


>gi|224541365|ref|ZP_03681904.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525699|gb|EEF94804.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
          Length = 345

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ CI C    C  +CP  C +       I   +C+ CG C   CPV AI+ 
Sbjct: 144 YTITDRCIHCG--KCETICPQRCIHN----EVIDVAQCLHCGACLEICPVQAIEF 192


>gi|150399562|ref|YP_001323329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012265|gb|ABR54717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 140

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +   C+ C+   C+  CP D   + ++ + ++P++CI C +C   CPV AI
Sbjct: 31 IPLRCMHCEDAPCIFACPKDAITKIDDKVVLNPEKCIGCALCIEACPVGAI 81


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E+C+ C    C   CPV     E     ++ P  CI CG C   CP  A+ P  + G
Sbjct: 561 VTPESCVGCG--ACKRACPVGAISGETRQAHSVDPTACIGCGACLDTCPFGALSPAPKEG 618


>gi|254361807|ref|ZP_04977942.1| tetrathionate reductase subunit B [Mannheimia haemolytica PHL213]
 gi|261491590|ref|ZP_05988173.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261494950|ref|ZP_05991419.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153093342|gb|EDN74338.1| tetrathionate reductase subunit B [Mannheimia haemolytica PHL213]
 gi|261309359|gb|EEY10593.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312716|gb|EEY13836.1| tetrathionate reductase subunit B [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 242

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
           V+   C  C    CV VCPV   F   +  + I+ ++CI CG C   CP DA  I  +T+
Sbjct: 93  VLPRLCNHCDQPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETK 152

Query: 61  PGLE 64
              +
Sbjct: 153 TADK 156


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY +  + CI C    C   CPV+    E +    I  D+CI CG C   C  +AI+
Sbjct: 539 TYTILPDKCIGCGV--CARRCPVNAITGERKQPHVIDQDKCIKCGACYEACKFNAIE 593



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEP----GLELWLKINSEYATQWPNITTKK 84
             I PD+CI CGVC   CPV+AI  + +       +  +K  + Y     N   K+
Sbjct: 540 YTILPDKCIGCGVCARRCPVNAITGERKQPHVIDQDKCIKCGACYEACKFNAIEKR 595


>gi|317133102|ref|YP_004092416.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ethanoligenens harbinense YUAN-3]
 gi|315471081|gb|ADU27685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ethanoligenens harbinense YUAN-3]
          Length = 56

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +   CI C    C   CPV C  EG+    I    C+DCG C   CPV A K 
Sbjct: 1  MAYKIGSECISCG--ACASECPVSCISEGDGIYVIDEATCVDCGTCATVCPVAAPKQ 55


>gi|119995|sp|P07508|FER_CLOTM RecName: Full=Ferredoxin
 gi|225169|prf||1210220A ferredoxin
          Length = 55

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ CI C    C   CPV     G++   I  D CI+CG C   CPVDA + 
Sbjct: 1  AYFITDACISCG--ACESECPVSPISPGDSVYVIDADACIECGACANVCPVDAPQQ 54


>gi|291286072|ref|YP_003502888.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio
          acetiphilus DSM 12809]
 gi|290883232|gb|ADD66932.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio
          acetiphilus DSM 12809]
          Length = 440

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK-PDTEPGLE 64
          + CI C    C   CPVD     +N    I+ ++CI C  C   CP DAI    TE   +
Sbjct: 16 DTCIACGAR-CESACPVDAVTMDDNESPIINEEKCIGCVKCVKVCPADAIFMYFTEEEQK 74

Query: 65 LWLKINSEYAT 75
          +  ++    A 
Sbjct: 75 ILAELEKAGAE 85



 Score = 42.1 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 37 PDECIDCGV-CEPECPVDAIKPDTEPG 62
          PD CI CG  CE  CPVDA+  D    
Sbjct: 15 PDTCIACGARCESACPVDAVTMDDNES 41


>gi|303243653|ref|ZP_07329994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485895|gb|EFL48818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 256

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + CI C    CV+ CPV+   E +  + I+   CI CG CE  CPV AI+
Sbjct: 196 VDNDTCIKCL--SCVDECPVNAIKEIKEGVEINKSSCIFCGRCEKVCPVHAIE 246



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          YV  + CI C    C E CPVD   +        I P++C+ C +C   CPV+AI+
Sbjct: 42 YVFPKRCIRCGL--CYEECPVDAITKPSIRKPAEIIPEKCVKCEICAKTCPVNAIE 95



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ENCI C    C   CP +  +        ++ D C+ C  CE  CP   IK   E G   
Sbjct: 132 ENCIKCGV--CQRYCPTNAIHVVRRKSFDVNLDLCVGCKACENVCPKKVIKVQNELGEIP 189

Query: 66  W 66
           +
Sbjct: 190 F 190



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 28/79 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--------------------------IHP 37
           ++ E C+ C+   C + CPV+     E  +                           I  
Sbjct: 74  IIPEKCVKCE--ICAKTCPVNAIEVLEGKVYLENEGVIYKLKETEIQHRTVRLVKYDIDL 131

Query: 38  DECIDCGVCEPECPVDAIK 56
           + CI CGVC+  CP +AI 
Sbjct: 132 ENCIKCGVCQRYCPTNAIH 150



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
          E ++ + P  CI CG+C  ECPVDAI
Sbjct: 38 ERYIYVFPKRCIRCGLCYEECPVDAI 63


>gi|168182073|ref|ZP_02616737.1| [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|182674775|gb|EDT86736.1| [Fe] hydrogenase [Clostridium botulinum Bf]
          Length = 497

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMAACPFGAISD 205


>gi|78777018|ref|YP_393333.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497558|gb|ABB44098.1| Formate dehydrogenase beta subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 196

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C +VCPVDCFY   + + +H  D+CI CG C   CP  A +   +   
Sbjct: 60  ACMHCTDAPCQQVCPVDCFYIRADGIVLHDKDKCIGCGYCLFACPFGAPQFPQDGAF 116


>gi|67474180|ref|XP_652839.1| Fe-hydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|27652439|gb|AAO17820.1| putative long iron-dependent hydrogenase 2 [Entamoeba histolytica]
 gi|56469743|gb|EAL47464.1| Fe-hydrogenase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 504

 Score = 62.1 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT+ C  C    C   CP  C   GE+    I+ + CI CG C   CP  AI   + P
Sbjct: 113 YFVTQACEGCTSRPCSVNCPKKCISFGEDGRAVINQNNCIKCGRCYKFCPYGAIISKSVP 172



 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 4   VVTEN-CILC--------------KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCE 47
           V+ +N CI C              K   CV+ CP     +    +  I  ++CI+CG C 
Sbjct: 145 VINQNNCIKCGRCYKFCPYGAIISKSVPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCM 204

Query: 48  PECPVDAIKP 57
             CP  AI P
Sbjct: 205 RACPFGAILP 214


>gi|209694971|ref|YP_002262900.1| formate dehydrogenase iron-sulfur subunit [Aliivibrio salmonicida
           LFI1238]
 gi|208008923|emb|CAQ79139.1| formate dehydrogenase iron-sulfur subunit [Aliivibrio salmonicida
           LFI1238]
          Length = 202

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C+ VCP DCF   E+ +  H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCMAVCPADCFEHTEDGIVRHNKDLCIGCGYCLFACPFGAPQFPKQGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 AERGKMD 119


>gi|83589316|ref|YP_429325.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572230|gb|ABC18782.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 231

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           VVT  C+ C    C  VCP     +  + + I    +CI C  C+  CP DA
Sbjct: 53  VVTTQCMHCDDPPCARVCPTGATQKRPDGIVIVDESKCIGCRYCQSACPYDA 104


>gi|116750829|ref|YP_847516.1| cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699893|gb|ABK19081.1| Cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 292

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E C  C    C  +C  D   EGE    + P  C  C VC   CP +AI+ +       
Sbjct: 65  GERCTGCGV--CASLCRFDAIREGERGYTVDPIRCEGCKVCVAFCPAEAIRFELRHCGHW 122

Query: 66  WL 67
           ++
Sbjct: 123 YV 124



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAIKP 57
          I  + C  CGVC   C  DAI+ 
Sbjct: 63 IDGERCTGCGVCASLCRFDAIRE 85


>gi|296158465|ref|ZP_06841296.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          Ch1-1]
 gi|295891409|gb|EFG71196.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          Ch1-1]
          Length = 413

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPDT 59
          E CI C    C E CPVD     +N   +  D C  C  C P CP  AI       K D 
Sbjct: 18 EICIRCN--TCEETCPVDAITHDDNNYVVKADICNGCMACVPPCPTGAIDNWRTVLKADA 75

Query: 60 EPGLELWL 67
           P  E + 
Sbjct: 76 YPIDEQFT 83



 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDDN 40


>gi|255322980|ref|ZP_05364116.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
 gi|255299842|gb|EET79123.1| formate dehydrogenase iron-sulfur subunit [Campylobacter showae
           RM3277]
          Length = 186

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           T  C  C    C +VCPVDCFY   + + +H  ++CI CG C   CP  A +   +   
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGAPQFPRDGAF 111


>gi|154483804|ref|ZP_02026252.1| hypothetical protein EUBVEN_01508 [Eubacterium ventriosum ATCC
          27560]
 gi|149735295|gb|EDM51181.1| hypothetical protein EUBVEN_01508 [Eubacterium ventriosum ATCC
          27560]
          Length = 56

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ CI C    C   CPV       +   I  D CI+CG C   CP D+I  D
Sbjct: 1  MAYKITDGCIGCG--ACEGTCPVGAISNDGSVCVIDADTCIECGACAGACPTDSITLD 56


>gi|254451106|ref|ZP_05064543.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
 gi|198265512|gb|EDY89782.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
          Length = 649

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C+ VCP          ++I P  C  CG C   CP  AI  D      ++ ++
Sbjct: 281 NCLNVCPTGAILSAGEVVSIDPLICAGCGACSAVCPSGAISYDAPTVDHIFRRL 334



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L      C+ CG+C   CP  AI
Sbjct: 496 VDTDACTLCL--ACVSLCPSGALGDNPDLPQLRFQESACLQCGLCANICPEKAI 547


>gi|15899475|ref|NP_344080.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
 gi|13816091|gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
          Length = 409

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E
Sbjct: 62  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 115


>gi|83855221|ref|ZP_00948751.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83843064|gb|EAP82231.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 650

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C+++CP          +AI P  C  CG C   CP  AI  D  P   L+ ++
Sbjct: 281 NCLDLCPTGAITSAGEHVAIDPMICAGCGSCSAVCPSGAITYDAPPVDTLFRRL 334



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI--KPDT 59
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI  KP  
Sbjct: 497 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPENAITLKPQL 554

Query: 60  EPGLELWLKI 69
               + + ++
Sbjct: 555 NLTAQAFTQV 564


>gi|271502701|ref|YP_003335727.1| glutamate synthase small subunit [Dickeya dadantii Ech586]
 gi|270346256|gb|ACZ79021.1| glutamate synthase, small subunit [Dickeya dadantii Ech586]
          Length = 667

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+ + C +VCP       ++ + +  ++CI C  C   CP  AI  + + 
Sbjct: 56  CRHCEDSPCAKVCPTQALVRKQDGIQLIAEKCIGCKTCVLACPFGAISVENQA 108


>gi|238758248|ref|ZP_04619427.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia aldovae
          ATCC 35236]
 gi|238703578|gb|EEP96116.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia aldovae
          ATCC 35236]
          Length = 172

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D  
Sbjct: 27 AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDEA 86

Query: 61 PGL 63
           G 
Sbjct: 87 KGH 89


>gi|83590718|ref|YP_430727.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573632|gb|ABC20184.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 176

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C   CPV    +  N + I+ D CI C  C   CP  +I+          + 
Sbjct: 60  CRHCEDAPCARACPVGAITQKNNVVLINSDRCIGCKTCAIVCPFGSIELVYREKEHKVVA 119

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 120 HKCDLCEGRP 129


>gi|167750547|ref|ZP_02422674.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702]
 gi|167656473|gb|EDS00603.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702]
          Length = 495

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C +VC +      E+    I   +C++CG C   CP  AI
Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAHIDKSKCVNCGQCAKVCPYGAI 154



 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 22/76 (28%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--------------------FLAIHPDECI 41
            ++    C+ C    C +VCP     E +                        I  D+CI
Sbjct: 132 AHIDKSKCVNCGQ--CAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCI 189

Query: 42  DCGVCEPECPVDAIKP 57
            CG C   CP  AI  
Sbjct: 190 SCGACVYTCPFGAISD 205


>gi|288800744|ref|ZP_06406201.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
 gi|288332205|gb|EFC70686.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
          Length = 55

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++ +C+ C    C++ CPV+   EG    +I+PD C +CG C   CP ++I
Sbjct: 1  MAYVISNDCVACG--TCIDECPVEAISEGS-IYSINPDACTECGSCAAVCPTESI 52


>gi|157165264|ref|YP_001466214.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
 gi|112801511|gb|EAT98855.1| formate dehydrogenase iron-sulfur subunit [Campylobacter concisus
           13826]
          Length = 186

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           T  C  C    C +VCPVDCFY   + + +H  ++CI CG C   CP  A +   +   
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGAPQFPKDGAF 111


>gi|83589885|ref|YP_429894.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83572799|gb|ABC19351.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 56

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M++ +TE C+ C    C + CP     EGE+   I P+ C DCG C   CP +AI  +
Sbjct: 1  MSHRITEECLACGV--CADECPNGAISEGEDKYEIDPELCTDCGTCMEACPNEAIVAE 56


>gi|308069431|ref|YP_003871036.1| Iron-sulfur protein [Paenibacillus polymyxa E681]
 gi|305858710|gb|ADM70498.1| Iron-sulfur protein [Paenibacillus polymyxa E681]
          Length = 216

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C++  C   CPV    + +  + I  + CI C  C   CP  AI+
Sbjct: 92  CRHCENAPCAHACPVQAIRQEDGVVMIDEERCIGCTSCVLACPFGAIE 139


>gi|237796742|ref|YP_002864294.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
 gi|229262438|gb|ACQ53471.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMAACPFGAISD 205


>gi|78222278|ref|YP_384025.1| formate dehydrogenase beta subunit [Geobacter metallireducens
           GS-15]
 gi|78193533|gb|ABB31300.1| formate dehydrogenase beta subunit [Geobacter metallireducens
           GS-15]
          Length = 277

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F++      I +  +CI C  C   CP    K +
Sbjct: 82  EMCMHCNDPACASVCPVGAFHKTPEGPVIYNAKKCIGCRFCMVACPFGVPKYE 134


>gi|83941743|ref|ZP_00954205.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83847563|gb|EAP85438.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 650

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +C+++CP          +AI P  C  CG C   CP  AI  D  P   L+ ++
Sbjct: 281 NCLDLCPTGAITSAGEHVAIDPMICAGCGSCSAVCPSGAITYDAPPVDTLFRRL 334



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI--KPDT 59
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  KP  
Sbjct: 497 VDTDACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCANVCPEDAITLKPQL 554

Query: 60  EPGLELWLKI 69
               + + ++
Sbjct: 555 NLTAQAFTQV 564


>gi|163747832|ref|ZP_02155170.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161378904|gb|EDQ03335.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 654

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 3   YVVTEN--CILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV TE   C   +      T C+++CP        + + + P  C  CG C   CP  AI
Sbjct: 266 YVRTEPLLCAHSRAGQTGCTACLDLCPTGAIVPDGDHVTVDPMICAGCGACSSACPSGAI 325

Query: 56  KPDTEP 61
             D  P
Sbjct: 326 SYDAPP 331



 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV +CP     +  +   L    D C+ CG+CE  CP DAI
Sbjct: 505 DACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGLCEHICPEDAI 553


>gi|148381245|ref|YP_001255786.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|148290729|emb|CAL84860.1| putative iron-dependent hydrogenase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 498

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 105 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 163



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 135 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 192

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 193 GACMAACPFGAISD 206


>gi|299143653|ref|ZP_07036733.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518138|gb|EFI41877.1| conserved domain protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 56

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y + ++CI C    C   CPVDC  EG +  +I+ D+CIDCG C   CP  A  P+ 
Sbjct: 1  MAYQINDSCIACG--ACKPECPVDCISEG-DIYSINADQCIDCGSCAAVCPTGAPNPED 56


>gi|223040716|ref|ZP_03610984.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
 gi|222878000|gb|EEF13113.1| formate dehydrogenase iron-sulfur subunit [Campylobacter rectus
           RM3267]
          Length = 186

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           T  C  C    C +VCPVDCFY   + + +H  ++CI CG C   CP  A +   +   
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKNKCIGCGYCLYACPFGAPQFPRDGAF 111


>gi|170758777|ref|YP_001788618.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405766|gb|ACA54177.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 15  TDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKIN 70
             C +VCP         +    I  + CI+CG C   CP  AI   +      +L  +  
Sbjct: 161 RPCKKVCPTGALEINPEDKRAMIEKENCINCGACMAACPFGAISDKSYIVNIAKLLKEKK 220

Query: 71  SEYATQWPNITTKKESLPSAAKMDGVKQKYEK 102
             YA   P IT +       AK+  VK    K
Sbjct: 221 KVYAVVAPAITGQFGPQ---AKVGQVKNALTK 249


>gi|168179051|ref|ZP_02613715.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|182670135|gb|EDT82111.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMAACPFGAISD 205


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY +  + CI C    C   CPV+    E +    I  D+CI CG C   C  +AI+
Sbjct: 539 TYTILPDKCIGCGV--CARRCPVNAISGERKQPHVIDQDKCIKCGACYEACKFNAIE 593



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEP----GLELWLKINSEYATQWPNITTKK 84
             I PD+CI CGVC   CPV+AI  + +       +  +K  + Y     N   K+
Sbjct: 540 YTILPDKCIGCGVCARRCPVNAISGERKQPHVIDQDKCIKCGACYEACKFNAIEKR 595


>gi|291530234|emb|CBK95819.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum 70/3]
 gi|291557046|emb|CBL34163.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 495

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE C  C    C +VC +      E+    I   +C++CG C   CP  AI
Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAHIDKSKCVNCGQCAKVCPYGAI 154



 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 22/76 (28%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--------------------FLAIHPDECI 41
            ++    C+ C    C +VCP     E +                        I  D+CI
Sbjct: 132 AHIDKSKCVNCGQ--CAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCI 189

Query: 42  DCGVCEPECPVDAIKP 57
            CG C   CP  AI  
Sbjct: 190 SCGACVYTCPFGAISD 205


>gi|226327317|ref|ZP_03802835.1| hypothetical protein PROPEN_01184 [Proteus penneri ATCC 35198]
 gi|225204535|gb|EEG86889.1| hypothetical protein PROPEN_01184 [Proteus penneri ATCC 35198]
          Length = 188

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +N + ++   CI C +C   CP  AI P
Sbjct: 33 CRHCEDAPCARVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAITP 81


>gi|170756783|ref|YP_001782925.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
 gi|169121995|gb|ACA45831.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMASCPFGAISD 205


>gi|51595156|ref|YP_069347.1| anaerobic dimethyl sulfoxide reductase, subunit B [Yersinia
           pseudotuberculosis IP 32953]
 gi|51588438|emb|CAH20046.1| anaerobic dimethyl sulfoxide reductase, subunit B [Yersinia
           pseudotuberculosis IP 32953]
          Length = 205

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++  + F+ ++ D CI C  C   CP  A + D E
Sbjct: 60  AYYLSIACNHCSDPACTKVCPSGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|304559052|gb|ADM41716.1| Pyridine nucleotide-disulfide oxidoreductase family protein
          [Edwardsiella tarda FL6-60]
          Length = 655

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C  VCP     +  + + +  ++CI C  C   CP  AI+
Sbjct: 33 CRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAIE 80


>gi|257460010|ref|ZP_05625114.1| formate dehydrogenase iron-sulfur subunit [Campylobacter gracilis
           RM3268]
 gi|257442451|gb|EEV17590.1| formate dehydrogenase iron-sulfur subunit [Campylobacter gracilis
           RM3268]
          Length = 185

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    C +VCPV CFY   + + +H  D+CI CG C   CP  A +   +   
Sbjct: 56  ACQHCTDAPCAQVCPVQCFYIRTDGVVLHDKDKCIGCGYCLYACPFGAPQFPRDGAF 112


>gi|153932223|ref|YP_001385620.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|153936790|ref|YP_001389026.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
 gi|152928267|gb|ABS33767.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|152932704|gb|ABS38203.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMAACPFGAISD 205


>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 596

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+           I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKGCG--ICAKNCPVNAISGKPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I PD+C  CG+C   CPV+AI
Sbjct: 530 CPAG-VCQALLRFYIDPDKCKGCGICAKNCPVNAI 563


>gi|222099632|ref|YP_002534200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572022|gb|ACM22834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
          Length = 366

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVV E C+ C    C + CPV           I  D+CI CG C   C   A+ P  + 
Sbjct: 197 PYVVEEKCVACG--TCAKFCPVGAITVT-KVARIDYDKCIGCGQCIAMCSYGAMSPKWDS 253

Query: 62  GLELWLKINSEYAT 75
             +   K  +EYA 
Sbjct: 254 STDSLSKKMAEYAK 267


>gi|171185513|ref|YP_001794432.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934725|gb|ACB39986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 279

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C    C   CPV          + I  DECI CG C+  CP D  K   +
Sbjct: 94  NCMHCVEAPCARACPVGAIKVSPEGAVVIEKDECIGCGYCQMACPYDVPKRGDD 147



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 14/55 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPV 52
           + CI C +  C   CP D    G++       +C  C           C   CP 
Sbjct: 125 DECIGCGY--CQMACPYDVPKRGDDGKFY---KCTFCVDRIQNGREPACVEVCPT 174


>gi|154496907|ref|ZP_02035603.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
 gi|150273865|gb|EDN00978.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VTE C  C    C EVCP D            I  D+CI CG C   C   AI     P
Sbjct: 117 VTEGCQGCLAHPCEEVCPKDAIKLDRYNGRSHIDQDKCIKCGRCADVCSYKAIIIQERP 175



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFY-EGENFLAIHPDECIDCGVC 46
           +++  + CI C                  C   C VD  + +      I  D+C+ CG+C
Sbjct: 147 SHIDQDKCIKCGRCADVCSYKAIIIQERPCAVACGVDAIHTDINGKAEIDYDKCVSCGMC 206

Query: 47  EPECPVDAI 55
              CP  AI
Sbjct: 207 LVNCPFGAI 215


>gi|91784376|ref|YP_559582.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
 gi|91688330|gb|ABE31530.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
          Length = 413

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPDT 59
          E CI C    C E CPVD     +N   +  D C  C  C P CP  AI       K D 
Sbjct: 18 EICIRCN--TCEETCPVDAITHDDNNYVVKADICNGCMACVPPCPTGAIDNWRTVLKADA 75

Query: 60 EPGLELWL 67
           P  E + 
Sbjct: 76 YPIDEQFT 83



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDDN 40


>gi|310828219|ref|YP_003960576.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
 gi|308739953|gb|ADO37613.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
          Length = 262

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+E+C  C   +CV VCPV      ++     PD CI C  C   CPV+A K    P L 
Sbjct: 182 VSEDCTQCG--ECVSVCPVAAINP-DDPTETDPDLCIRCCACVRICPVEARKFTAPPFLA 238

Query: 65  --LWLKINSEYATQWPNI 80
              +L+ N     + P I
Sbjct: 239 TVQFLEGNFAGIYKKPEI 256


>gi|153938019|ref|YP_001392647.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|152933915|gb|ABS39413.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|295320632|gb|ADG01010.1| [Fe] hydrogenase [Clostridium botulinum F str. 230613]
          Length = 497

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMAACPFGAISD 205


>gi|320184796|gb|EFW59587.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           CDC 796-83]
          Length = 222

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + + CI C  T C  VCPV+C     +    I    CI CG C   C   AI
Sbjct: 541 YSINDKCIGC--TACARVCPVNCIAGKVKEKHVIDQSVCIKCGACYSTCKFGAI 592



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP           +I+ D+CI C  C   CPV+ I
Sbjct: 530 CPAGA-CTDLLQYSIN-DKCIGCTACARVCPVNCI 562


>gi|156742845|ref|YP_001432974.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234173|gb|ABU58956.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 482

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V   C  C+   +CVE CP D     ++   +  D C  CG C P CP DA+ 
Sbjct: 357 VANACRQCRVGAECVEACPEDAIVWNDSGALMITDACTGCGECVPACPYDAVH 409


>gi|57169093|ref|ZP_00368220.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter coli
           RM2228]
 gi|305432302|ref|ZP_07401465.1| formate dehydrogenase [Campylobacter coli JV20]
 gi|57019551|gb|EAL56242.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter coli
           RM2228]
 gi|304444650|gb|EFM37300.1| formate dehydrogenase [Campylobacter coli JV20]
          Length = 213

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 65  SCMHCDDAPCAIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 118


>gi|313143772|ref|ZP_07805965.1| formate dehydrogenase iron-sulfur subunit [Helicobacter cinaedi
           CCUG 18818]
 gi|313128803|gb|EFR46420.1| formate dehydrogenase iron-sulfur subunit [Helicobacter cinaedi
           CCUG 18818]
          Length = 204

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           ++  C+ C    C +VCPVDCFY   + + +H    CI CG C   CP  A + 
Sbjct: 59  ISIACMHCADAPCAKVCPVDCFYIRADGIVLHNKKTCIGCGYCLYACPFGAPQF 112


>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 596

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+           I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKGCG--ICAKNCPVNAISGKPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I PD+C  CG+C   CPV+AI
Sbjct: 530 CPAG-VCQALLRFYIDPDKCKGCGICAKNCPVNAI 563


>gi|297582883|ref|YP_003698663.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141340|gb|ADH98097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 286

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   C+ C    C  VCPV   Y+ +N + +   D CI C  C   CP  A   D     
Sbjct: 131 IARPCMHCDKPPCASVCPVRATYKADNGIVVQDNDRCIGCRYCMVACPYGARSFDFGEEY 190

Query: 64  ELWLKIN 70
           E  L  N
Sbjct: 191 EEILDAN 197


>gi|89894374|ref|YP_517861.1| hypothetical protein DSY1628 [Desulfitobacterium hafniense Y51]
 gi|219668800|ref|YP_002459235.1| electron transfer flavoprotein alpha/beta-subunit
          [Desulfitobacterium hafniense DCB-2]
 gi|89333822|dbj|BAE83417.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539060|gb|ACL20799.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfitobacterium hafniense DCB-2]
          Length = 428

 Score = 61.7 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-------D 53
          M  ++   CI C    CV  CP +    G++ + +   +C +CG C   CP         
Sbjct: 1  MAVIIGPGCISCGL--CVGECPSEALELGDSGVVVDAGKCTECGDCVSVCPSNILSLPEG 58

Query: 54 AIKPDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMDGV 96
          A K   EP         +E +   P   +  K   +P      GV
Sbjct: 59 AGKSAEEPKQTS-----TEPSPAAPGAKVEKKAAPVPGGDVWSGV 98


>gi|163857881|ref|YP_001632179.1| ferredoxin-NADP oxidoreductase [Bordetella petrii DSM 12804]
 gi|163261609|emb|CAP43911.1| ferredoxin-NADP oxidoreductase [Bordetella petrii]
          Length = 416

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D      N   + PD C  C  C P CP  +I
Sbjct: 18 EICIRCN--TCEETCPIDAITHDGNNYVVDPDICNGCMACVPPCPTGSI 64



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP+DAI  D
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHD 38


>gi|154492142|ref|ZP_02031768.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
          43184]
 gi|154087367|gb|EDN86412.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
          43184]
          Length = 458

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + C+ C  T C+  CP       E   +I    C+DCG C   CP +AI  + +   +++
Sbjct: 15 DRCVGC--THCMTKCPTGAIRIREGKASIRKGWCVDCGECLKACPTEAIYVEQDDFQKIF 72



 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I  D C+ C  C  +CP  AI+
Sbjct: 10 LKIDNDRCVGCTHCMTKCPTGAIR 33


>gi|146304360|ref|YP_001191676.1| thiamine pyrophosphate binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145702610|gb|ABP95752.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Metallosphaera sedula DSM 5348]
          Length = 607

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             V  + C  C  T C +   CP       +    I+P +CI CG C P CP +AIK + 
Sbjct: 539 AVVNYDKCTGC--TICYDYFTCPA-ILKRSDKKAVINPQDCIGCGACVPVCPFNAIKLEG 595

Query: 60  EPGL 63
           E  +
Sbjct: 596 EKPM 599


>gi|86157468|ref|YP_464253.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85773979|gb|ABC80816.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 100

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +TE CI C    C   CP     +G++   I+PD C +C        C   CPVD 
Sbjct: 1  MATFITEECINCG--ACEPECPNSAISQGDDIYVINPDLCTECVGFHGEEACAAVCPVDC 58

Query: 55 IKPD---TEPGLELWLKINSEYATQWPNIT 81
            PD   TE   + +    ++ AT  P+ T
Sbjct: 59 CVPDPNRTETEEQNY----AKLATIHPDKT 84


>gi|116623401|ref|YP_825557.1| cyclic nucleotide-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226563|gb|ABJ85272.1| cyclic nucleotide-binding protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 755

 Score = 61.7 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++V  +C  C    C+  CPV      ++   +  D CI CG C  +CP   I
Sbjct: 509 FLVATSCRACMDPLCMTRCPVGSIRRKDSLDIVIEDWCIGCGNCAIDCPYGNI 561


>gi|157737738|ref|YP_001490421.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|157737750|ref|YP_001490434.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|315637769|ref|ZP_07892966.1| formate dehydrogenase [Arcobacter butzleri JV22]
 gi|157699592|gb|ABV67752.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|157699604|gb|ABV67764.1| formate dehydrogenase, iron-sulfur subunit FdhB [Arcobacter
           butzleri RM4018]
 gi|315477939|gb|EFU68675.1| formate dehydrogenase [Arcobacter butzleri JV22]
          Length = 197

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            C+ C    C +VCP DCFY   + + +H  D+CI CG C   CP  A + 
Sbjct: 61  ACMHCADAPCQQVCPTDCFYIRTDGIVLHDKDKCIGCGYCLFACPFGAPQF 111


>gi|197117888|ref|YP_002138315.1| electron transfer flavoprotein subunit alpha [Geobacter
          bemidjiensis Bem]
 gi|197087248|gb|ACH38519.1| electron transfer flavoprotein, alpha subunit [Geobacter
          bemidjiensis Bem]
          Length = 442

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V+   CI C    C   CPVD     E     I   +CI C  C   CP  AI+    P 
Sbjct: 17 VLEGRCIACGAR-CQSACPVDAIQMNEAGEPVIDASKCIGCVKCVKVCPAQAIEMAFTPE 75

Query: 63 LE 64
           +
Sbjct: 76 EK 77


>gi|119719691|ref|YP_920186.1| thiamine pyrophosphate binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524811|gb|ABL78183.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Thermofilum
           pendens Hrk 5]
          Length = 623

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           YV  E C+ C    CV+   CP       E+  + I P+ C+ CGVC   CP  AI P
Sbjct: 564 YVDQERCVRCG--ICVDKFSCP--AIVREEDGRVVILPEVCVGCGVCATICPAKAIHP 617


>gi|307243643|ref|ZP_07525786.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
 gi|306493012|gb|EFM65022.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
          Length = 55

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  EG +   I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIKDSCIACG--ACAAECPVSCISEG-DIYTIDASACIDCGSCAGVCPVDAPQPE 55


>gi|51894277|ref|YP_076968.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
 gi|51857966|dbj|BAD42124.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
          Length = 149

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + E CI C  T CV VCP +    E +    I P  CIDC  C   CPV AI  +
Sbjct: 1  MPHYIDEKCIGC--TACVSVCPTEAISGERKQLHYIDPKLCIDCDACVRSCPVLAIADE 57



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C  C    CV++CP DC     +       + + P+ C+ C  CE  C   AI      
Sbjct: 80  SCSGCDF--CVDICPFDCLELAGDGPFFGTAVLVRPNACVGCKECEEVCAKGAIIVLAPD 137

Query: 62  GL 63
             
Sbjct: 138 EQ 139


>gi|300245949|gb|ADJ94032.1| putative benzoate-degrading protein BamI [Clostridia bacterium
           enrichment culture clone BF]
          Length = 365

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +C  C    CVEVCPV+      +F  +    CI CGVC P+CP +A
Sbjct: 290 SCTGCG--ACVEVCPVNALTMEGDFPVVDEGWCIGCGVCIPKCPTEA 334



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 13/37 (35%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           P D               C  CG C   CPV+A+  +
Sbjct: 273 PRDVLMATYFMRETDEGSCTGCGACVEVCPVNALTME 309


>gi|226950727|ref|YP_002805818.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|226844550|gb|ACO87216.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|322807610|emb|CBZ05185.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 497

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C+EVC             I  ++C +CG+C+  CP +AI     P
Sbjct: 104 FRVTEACRGCIQHRCMEVCSAKAMVRINGKSYIDQNKCRECGLCKKVCPYNAIVEVMRP 162



 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDE---------CIDC 43
           +Y+    C  C    C +VCP +   E             L I+PD+         CI+C
Sbjct: 134 SYIDQNKCRECGL--CKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINC 191

Query: 44  GVCEPECPVDAIKP 57
           G C   CP  AI  
Sbjct: 192 GACMAACPFGAISD 205


>gi|303236983|ref|ZP_07323558.1| ferredoxin [Prevotella disiens FB035-09AN]
 gi|302482848|gb|EFL45868.1| ferredoxin [Prevotella disiens FB035-09AN]
          Length = 55

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++ +CI C    C++ CPV    EG +   I  D C +CG C   CP +AI
Sbjct: 1  MAYVISNDCIACG--TCIDECPVGAISEG-DIYNIDADACTECGTCASVCPSEAI 52


>gi|268591053|ref|ZP_06125274.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313858|gb|EFE54311.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 205

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C+   CV+VCP    ++ E+ F+ +    CI C  C   CP  A + D+E
Sbjct: 60  SYYLSISCNHCEDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQFDSE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|225023979|ref|ZP_03713171.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
 gi|224943004|gb|EEG24213.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
          Length = 291

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + Y+    CI C  T C++ CPVD        +  +  DEC  CG+C P CPVD I+   
Sbjct: 74  LAYIDETACIGC--TACIKACPVDAILGASKLMHTVLADECTGCGLCLPPCPVDCIRMQP 131

Query: 60  EPGL 63
            P  
Sbjct: 132 VPDA 135


>gi|218264316|ref|ZP_03478173.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222117|gb|EEC94767.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii
           DSM 18315]
          Length = 481

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D CI CG C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVY 169



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C EVCPV    + E  +  I   +CI CG C   CP
Sbjct: 150 DTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|121534183|ref|ZP_01666008.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307286|gb|EAX48203.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 193

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP    YE + F+ I+   CI C VC   CP  AI
Sbjct: 64  CRQCEDAPCAHACPTGAIYEEDRFVKINESNCIGCKVCTMVCPFGAI 110


>gi|15898912|ref|NP_343517.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|284173031|ref|ZP_06387000.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) protein [Sulfolobus
           solfataricus 98/2]
 gi|1707734|emb|CAA69454.1| orf c01004 [Sulfolobus solfataricus P2]
 gi|13815423|gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|261603331|gb|ACX92934.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus solfataricus 98/2]
          Length = 363

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWVYCPDECFDETPDGYYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W +  ++Y  +W
Sbjct: 326 DYRRPYEMWKEDKAKY-KEW 344


>gi|325677740|ref|ZP_08157388.1| ferredoxin [Ruminococcus albus 8]
 gi|324110563|gb|EGC04731.1| ferredoxin [Ruminococcus albus 8]
          Length = 56

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + ++CI C    C+  CPV    E +    I    C+DCG C   CPV A + +
Sbjct: 1  MAYKINDDCIGCG--ACMAECPVGAISEADGKCVIDASACLDCGACAGTCPVGAPQAE 56


>gi|11497774|ref|NP_068996.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650484|gb|AAB91070.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 180

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV  CPV+  Y+ E  L  I  + CI CG C   CP  A
Sbjct: 57  CNHCDNPSCVHACPVNATYKTEEGLVLIDDEICIGCGACIQACPYGA 103


>gi|150388818|ref|YP_001318867.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149948680|gb|ABR47208.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 226

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           ++  C  C+   CV  CPV+    Y+ +N + +H +E CI C  CE  CP   I  + E 
Sbjct: 54  ISTLCNHCEDAPCVTACPVNPKAMYKQDNGITMHDEETCIGCRACETACPYGVIYYNDEE 113

Query: 62  GLELW 66
               W
Sbjct: 114 PFGKW 118


>gi|325265960|ref|ZP_08132646.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
 gi|324982598|gb|EGC18224.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
          Length = 284

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+    CI C  T C+  CPVD        +  +  DEC  CG+C P CPVD I
Sbjct: 73  AYIDEAVCIGC--TACIRACPVDAIMGASKLMHTVLADECTGCGLCVPPCPVDCI 125


>gi|145298799|ref|YP_001141640.1| hydrogenase 4 Fe-S subunit [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851571|gb|ABO89892.1| hydrogenase 4 Fe-S subunit [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 231

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C++VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 51 CRHCDDAPCIKVCPVEAIAQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|188587369|ref|YP_001918914.1| Indolepyruvate ferredoxin oxidoreductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352056|gb|ACB86326.1| Indolepyruvate ferredoxin oxidoreductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           YV    CI C   +CV+  CP     E  N       I PD C+ C VC   CPV+AI+
Sbjct: 546 YVNPNVCIGC--RNCVKTNCPPIKMTEYPNQDKLKSFIDPDVCVGCSVCSQVCPVEAIR 602


>gi|222054720|ref|YP_002537082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
 gi|221564009|gb|ACM19981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
          Length = 55

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +++ CI C    C E CPV+   E  +   I  D CIDCG C   CPV AI
Sbjct: 1  MAHKISDECINCG--ACDESCPVNAISEEGSKRTISADTCIDCGACVDTCPVSAI 53



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          DECI+CG C+  CPV+AI  +
Sbjct: 7  DECINCGACDESCPVNAISEE 27


>gi|308049780|ref|YP_003913346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631970|gb|ADN76272.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 233

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGL 63
           +   C  C +  CVEVCP    Y+ +N L +H +E CI C  C   CP   I  +     
Sbjct: 53  IPTLCNHCDNAACVEVCPTGAMYKADNGLTLHRNEDCIGCQRCVRACPYQVIGMNRSAPH 112

Query: 64  ELWLKINS 71
             W    +
Sbjct: 113 RHWQDDEA 120


>gi|261601245|gb|ACX90848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 398

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|160935395|ref|ZP_02082777.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441753|gb|EDP19453.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y +T  C  C   +C+  CP  C    +    I  + CI CG C   CP  A+    E G
Sbjct: 173 YFITRQCRGCG--NCLSKCPQTCITTAQVPFEIQKEHCIRCGNCLEVCPFGAVVRREEDG 230


>gi|16272978|ref|NP_439205.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae Rd KW20]
 gi|145632412|ref|ZP_01788147.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 3655]
 gi|229843915|ref|ZP_04464056.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 6P18H1]
 gi|260580135|ref|ZP_05847965.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|1169361|sp|P45003|DMSB_HAEIN RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|1574080|gb|AAC22705.1| anaerobic dimethyl sulfoxide reductase, chain B (dmsB) [Haemophilus
           influenzae Rd KW20]
 gi|144987319|gb|EDJ93849.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 3655]
 gi|229812909|gb|EEP48597.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 6P18H1]
 gi|260093419|gb|EEW77352.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|301169793|emb|CBW29394.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae 10810]
          Length = 205

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|117920783|ref|YP_869975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|146294906|ref|YP_001185330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|33286385|gb|AAQ01673.1| ArrB [Shewanella sp. ANA-3]
 gi|117613115|gb|ABK48569.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
 gi|145566596|gb|ABP77531.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 234

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           TY+ T  C  C    CV+VCP    ++ +  L + + DECI C  C   CP   I  +  
Sbjct: 51  TYIPT-LCNHCDDAPCVKVCPTGAMHKDKRGLTLQNNDECIGCKKCMNACPYGVISFNAA 109

Query: 61  PGLELW 66
                W
Sbjct: 110 TPHRRW 115


>gi|330859342|emb|CBX69688.1| formate hydrogenlyase subunit 2 [Yersinia enterocolitica W22703]
          Length = 257

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 95  CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 143


>gi|297617763|ref|YP_003702922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145600|gb|ADI02357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 354

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 8   NCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            CI C    C E  CPV      E+   ++ D CI CG+C  +CP +AI        E  
Sbjct: 276 ECIGCG--ICAEERCPVKAIEMIEDIAVLNNDRCIGCGLCVSKCPTNAISLVKRDDYEFP 333

Query: 67  LKINSEYATQ 76
            +   E + +
Sbjct: 334 PETVRELSDR 343



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 35  IHPDECIDCGVCEPE-CPVDAIK 56
           I   ECI CG+C  E CPV AI+
Sbjct: 272 IDAPECIGCGICAEERCPVKAIE 294


>gi|154491696|ref|ZP_02031322.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC
           43184]
 gi|154087937|gb|EDN86982.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC
           43184]
          Length = 481

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D CI CG C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVY 169



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C EVCPV    + E  +  I   +CI CG C   CP
Sbjct: 150 DTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|261494021|ref|ZP_05990524.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496220|ref|ZP_05992626.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308172|gb|EEY09469.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310187|gb|EEY11387.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 205

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            +V+ + CI C  T C++ CPVD        +  I PD C  C +C   CP + I+    
Sbjct: 109 AFVIEDLCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNCIEMRPI 166

Query: 60  EPGLELW 66
           +P  + W
Sbjct: 167 KPTTQSW 173


>gi|159905555|ref|YP_001549217.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887048|gb|ABX01985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 138

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C+   C+  CP D   + ++ + I P++CI C +C   CPV AI  D
Sbjct: 35 CMHCEDAPCLNACPEDAIKKIDDKVVIEPEKCIGCALCAEVCPVGAIVID 84


>gi|32265726|ref|NP_859758.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter hepaticus ATCC 51449]
 gi|32261774|gb|AAP76824.1| Fe-S-cluster-containing formate dehydrogenase component 1
           [Helicobacter hepaticus ATCC 51449]
          Length = 209

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           V+  C+ C    C +VCPVDCFY   + + +H    CI CG C   CP  A + 
Sbjct: 63  VSIACMHCADAPCAKVCPVDCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQF 116


>gi|56477086|ref|YP_158675.1| formate dehydrogenase iron-sulfur subunit [Aromatoleum aromaticum
           EbN1]
 gi|56313129|emb|CAI07774.1| Formate dehydrogenase iron-sulfur subunit [Aromatoleum aromaticum
           EbN1]
          Length = 201

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    C+ VCP +  Y  E  + +H  D CI CG C   CP  A +    P  
Sbjct: 54  ACMHCSDAPCIAVCPTNVIYHTEEGVVLHDKDGCIGCGYCFYACPFGAPQFPNGPAA 110


>gi|268610343|ref|ZP_06144070.1| hypothetical protein RflaF_12691 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C    C+  CP  C  E +    I  + C+ CG C   CPV A+
Sbjct: 153 YFVTDDCIRCG--SCLSDCPQSCI-ELKEKAVIRQENCLHCGNCAAVCPVGAV 202


>gi|171185318|ref|YP_001794237.1| thiamine pyrophosphate binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934530|gb|ACB39791.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 3   YVVTENCILC----KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V  + C+ C        C  + P      G+    I P  C  CG+C   CP  AIK +
Sbjct: 525 WVDVDKCVGCSLCYGLLRCSAIAP-----RGDRKAYIDPALCTGCGMCAEVCPTGAIKGE 579

Query: 59  TEPGLELWLK 68
            E  LE+W +
Sbjct: 580 RERWLEIWRQ 589


>gi|186476296|ref|YP_001857766.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phymatum STM815]
 gi|184192755|gb|ACC70720.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
          phymatum STM815]
          Length = 416

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +    + PD C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEETCPIDAIQHDDTNYVVMPDVCNGCMACVPPCPTGAI 64



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I P+ CI C  CE  CP+DAI+ D 
Sbjct: 15 IDPEICIRCNTCEETCPIDAIQHDD 39


>gi|298376335|ref|ZP_06986291.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267372|gb|EFI09029.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 262

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+N  C  C++  CV+VCP       +  +   P++CI C  C  ECP  A   DT 
Sbjct: 188 VTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNQCIKCCACVKECPEGARTFDTP 243


>gi|332298379|ref|YP_004440301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
 gi|332181482|gb|AEE17170.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
          Length = 56

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C   CPV    E  +   I    C+ CG C   CP +AI  +
Sbjct: 1  MAYKITDACVNCG--SCEGECPVGAISEDGDKRVIDAASCVSCGTCAAACPTEAIVEE 56


>gi|317485201|ref|ZP_07944082.1| dimethylsulfoxide reductase [Bilophila wadsworthia 3_1_6]
 gi|316923492|gb|EFV44697.1| dimethylsulfoxide reductase [Bilophila wadsworthia 3_1_6]
          Length = 209

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C++  C E CP    ++ EN +  + PD C+ C  CE  CP  A + D E
Sbjct: 60  AYYVSLSCNHCENPVCAEACPTQAMHKDENGIVSVDPDRCVGCRYCEWNCPYGAPQFDPE 119


>gi|310777828|ref|YP_003966161.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747151|gb|ADO81813.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 334

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            CI C    CV  CPVD      N   I P++CI CG+C  +CP +AI  + + 
Sbjct: 217 ACIGCGV--CVRACPVDAIDLNNNLAKIDPEKCIQCGLCAIKCPTNAITSEVKE 268



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            + DC  VCPVD     +  +  I+ D+C+ C  C  ECP   I
Sbjct: 145 GYGDCAAVCPVDAITITDKGVAVINEDKCVSCEKCVKECPKRVI 188



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E CI C  T C  VCPVD    E +    +  ++CI C +C  +C   AIK
Sbjct: 274 IIEEKCIGC--TACARVCPVDAIEGEVKQKHKVIEEKCIGCQLCYEKCKFGAIK 325


>gi|307133273|ref|YP_003885289.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
 gi|306530802|gb|ADN00733.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
          Length = 664

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+ + C +VCP       ++ + +  ++CI C  C   CP  AI  +T+
Sbjct: 56  CRHCEDSPCAKVCPTQALVRKQDGIQLVAEKCIGCKTCVLACPFGAISVETQ 107


>gi|15603620|ref|NP_246694.1| DmsB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12722171|gb|AAK03839.1| DmsB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 206

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C +  CV VCP    ++ E+   I +   CI C  C   CP DA + D
Sbjct: 61  AYYLSISCNHCDNPACVSVCPTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYD 118


>gi|145628000|ref|ZP_01783801.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.1-21]
 gi|145630136|ref|ZP_01785918.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|145634201|ref|ZP_01789912.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittAA]
 gi|145636509|ref|ZP_01792177.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittHH]
 gi|145638142|ref|ZP_01793752.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittII]
 gi|260581897|ref|ZP_05849693.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|319776718|ref|YP_004139206.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3047]
 gi|319897467|ref|YP_004135664.1| oxidoreductase, fe-s subunit [Haemophilus influenzae F3031]
 gi|329123894|ref|ZP_08252448.1| anaerobic dimethyl sulfoxide reductase subunit B [Haemophilus
           aegyptius ATCC 11116]
 gi|144979775|gb|EDJ89434.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.1-21]
 gi|144984417|gb|EDJ91840.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|145268645|gb|EDK08638.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittAA]
 gi|145270334|gb|EDK10269.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittHH]
 gi|145272471|gb|EDK12378.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittII]
 gi|260095090|gb|EEW78982.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|309751304|gb|ADO81288.1| Anaerobic dimethyl sulfoxide reductase, subunit B [Haemophilus
           influenzae R2866]
 gi|309973477|gb|ADO96678.1| Anaerobic dimethyl sulfoxide reductase, subunit B [Haemophilus
           influenzae R2846]
 gi|317432973|emb|CBY81342.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3031]
 gi|317451309|emb|CBY87547.1| oxidoreductase, Fe-S subunit [Haemophilus influenzae F3047]
 gi|327468501|gb|EGF13982.1| anaerobic dimethyl sulfoxide reductase subunit B [Haemophilus
           aegyptius ATCC 11116]
          Length = 205

 Score = 61.3 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|254361778|ref|ZP_04977913.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|153093313|gb|EDN74309.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
          Length = 205

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            +V+ + CI C  T C++ CPVD        +  I PD C  C +C   CP + I+    
Sbjct: 109 AFVIEDLCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNCIEMRPI 166

Query: 60  EPGLELW 66
           +P  + W
Sbjct: 167 KPTTQSW 173


>gi|238021504|ref|ZP_04601930.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
 gi|237868484|gb|EEP69490.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
          Length = 324

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I 
Sbjct: 79  CIGC--TACIRACPVDAIMGASKQMHTVLADECTGCGLCVAPCPVDCIY 125



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 74 IDEAVCIGCTACIRACPVDAI 94



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C    CV  CPVDC Y   
Sbjct: 101 MHTVLADECTGCGL--CVAPCPVDCIYMRP 128


>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
 gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
          Length = 443

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA 54
          + +TE C+ C  T C  VCPV C     +    I   +C+ CG C   CP+ A
Sbjct: 27 FQITEKCVGC--TKCARVCPVSCISGKVKERHVIDTTKCVKCGQCISACPMGA 77


>gi|283833812|ref|ZP_06353553.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291070479|gb|EFE08588.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 205

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|256810831|ref|YP_003128200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256794031|gb|ACV24700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 164

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C    C EVCPV      + ++ ++ + CI CG+C   CP  AI  D + 
Sbjct: 44 CQHCASAPCKEVCPVSAIEHKDGYVYLNEEVCIGCGLCALACPFGAITLDDKA 96


>gi|318604983|emb|CBY26481.1| formate hydrogenlyase subunit 2 [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 215

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 53  CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 101


>gi|18312508|ref|NP_559175.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|4099070|gb|AAD00534.1| putative molybdopterin oxidoreductase iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18159970|gb|AAL63357.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 214

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C++  CV+ CP    Y+ E+ L  ++ D CI CG C   CP  A
Sbjct: 81  FVPKQCNHCENAPCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGA 132


>gi|224367283|ref|YP_002601446.1| FdhB1 [Desulfobacterium autotrophicum HRM2]
 gi|223689999|gb|ACN13282.1| FdhB1 [Desulfobacterium autotrophicum HRM2]
          Length = 205

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C + CPVD   + +  + I    CI C  C   CP  AI+
Sbjct: 78  CRHCEDAPCAQSCPVDAICQVDGVILIDDKRCIGCKSCMMACPFGAIE 125


>gi|145640720|ref|ZP_01796303.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae R3021]
 gi|148828211|ref|YP_001292964.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittGG]
 gi|145274646|gb|EDK14509.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 22.4-21]
 gi|148719453|gb|ABR00581.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae PittGG]
          Length = 205

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|332161103|ref|YP_004297680.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325665333|gb|ADZ41977.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 213

 Score = 61.3 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 51 CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 99


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           YV+   CI C  T C  +CP  C          I  ++CI CG C   C   AI  D
Sbjct: 560 YVINNKCIGC--TLCARICPESCITGSPKQRHYIDAEKCIKCGSCYEACKFHAINRD 614


>gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
 gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
          Length = 526

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y + E CI C    C  +CP      E  N   I+ D+CI CG C+  CP+DAI
Sbjct: 472 YDIGEACIGCG--KCKRLCPAQAISGEVRNKHEINQDKCIKCGQCKENCPIDAI 523



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI CG C+  CP  AI  +     E
Sbjct: 476 EACIGCGKCKRLCPAQAISGEVRNKHE 502


>gi|167392731|ref|XP_001740273.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895662|gb|EDR23298.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 504

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C   CP  C   GE+    I+ ++CI CG C   CP  AI
Sbjct: 113 YFVTQSCEGCTSRPCSVNCPKKCISFGEDGRALINQNDCIKCGRCFKFCPYGAI 166



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 8   NCILC--------------KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           +CI C              K   CV+ CP     +    +  I  ++CI+CG C   CP 
Sbjct: 150 DCIKCGRCFKFCPYGAIIHKSIPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRACPF 209

Query: 53  DAIKP 57
             I P
Sbjct: 210 GTILP 214


>gi|260881286|ref|ZP_05404060.2| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
 gi|260849026|gb|EEX69033.1| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
          Length = 206

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           Y V++ C+ C    C+ VCP  C   GEN    I    C+ CG C   CPV AI 
Sbjct: 150 YQVSKACVGC--RRCLSVCPQACITMGENDCAHIEDSHCLSCGRCAEVCPVQAIH 202


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y +TE C  C  T C  VCPV         L  I  ++CI CG C  +C   AI  +
Sbjct: 541 YHITEQCKGC--TACARVCPVGAISGTVKALHTIDQEKCIKCGACMDKCKFAAIVRE 595


>gi|254458516|ref|ZP_05071941.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084824|gb|EDZ62111.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 202

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C+ C    C +VCP DCFY  E+ + +H  ++CI C  C   CP  A +   + 
Sbjct: 53  YSLSIACMHCTDAPCEQVCPTDCFYIREDGIVLHDKEKCIGCAYCLYACPFGAPQFPLDG 112

Query: 62  GL 63
             
Sbjct: 113 AF 114


>gi|229846080|ref|ZP_04466192.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 7P49H1]
 gi|229811084|gb|EEP46801.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 7P49H1]
          Length = 205

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|197286375|ref|YP_002152247.1| hydrogenase-4 component A [Proteus mirabilis HI4320]
 gi|227357429|ref|ZP_03841783.1| hydrogenase-4 component A [Proteus mirabilis ATCC 29906]
 gi|194683862|emb|CAR45000.1| hydrogenase-4 component A [Proteus mirabilis HI4320]
 gi|227162387|gb|EEI47387.1| hydrogenase-4 component A [Proteus mirabilis ATCC 29906]
          Length = 206

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+     +N + ++   CI C +C   CP  AI P
Sbjct: 51 CRHCEDAPCASVCPVNAITHEDNMIFLNESLCIGCKLCGLVCPFGAITP 99


>gi|77918293|ref|YP_356108.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77544376|gb|ABA87938.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 57

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          T+ +TE+CI C    C +VCPVD   E      +    C DCG C+  CPVDAIK D
Sbjct: 3  THYITEDCINCG--ACADVCPVDAISEKGELHIVDQPTCTDCGACDEVCPVDAIKWD 57


>gi|288961311|ref|YP_003451650.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288913619|dbj|BAI75106.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 197

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPVD    G + + +    CI C +C   CP  AI P
Sbjct: 51 CHQCEDAPCARVCPVDAITFGADAILLDEQTCIGCKMCALACPFGAITP 99


>gi|260434027|ref|ZP_05787998.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417855|gb|EEX11114.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 651

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C  ++C+++CP        + +AI P  C  CG C   CP  AI  +  P
Sbjct: 277 VGC--SNCLDICPTGAITPAGDHVAIDPMVCAGCGECAALCPSTAISYEDPP 326



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEP 61
           V TE C LC    CV +CP     +  +   ++   D C+ CG+C+  CP  AI    E 
Sbjct: 498 VDTEACTLCL--SCVSLCPSGALIDNPDLPQLNYQQDACLQCGLCKTICPESAITLVPEL 555

Query: 62  GLEL 65
            L  
Sbjct: 556 DLSD 559


>gi|188587191|ref|YP_001918736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351878|gb|ACB86148.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 275

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y   + C+ C    C+ VCP    Y  E+    +  D CI C  C   CP + I  D
Sbjct: 70  YFSKQGCMHCTDAGCLTVCPTGAIYRTESGTVNVDFDRCIGCNYCAANCPFNVISFD 126


>gi|121534846|ref|ZP_01666666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306641|gb|EAX47563.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 118

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           Y +T+NC  C    C+E CP      G++   ++ D C  CG CE  CP  AI  +T+P 
Sbjct: 39  YFITKNCKKCD--ACLEHCPEGAVSAGKDGNIVN-DNCTGCGECEAVCPNGAIVRETDP- 94

Query: 63  LELWLKINSEY 73
              +  IN E 
Sbjct: 95  ---YRTINREM 102


>gi|68249608|ref|YP_248720.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 86-028NP]
 gi|68057807|gb|AAX88060.1| anaerobic dimethyl sulfoxide reductase chain B [Haemophilus
           influenzae 86-028NP]
          Length = 205

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|157157756|ref|YP_001462877.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|157079786|gb|ABV19494.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
          Length = 205

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|307718915|ref|YP_003874447.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
 gi|306532640|gb|ADN02174.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
          Length = 527

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VTE C  C    C   CP           +I  + CI+CG+CE  CP  AI
Sbjct: 158 FMVTEVCQGCVARPCKTGCPRGAISIVRGRASIDYERCINCGLCERVCPFHAI 210



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C EVCPV    +GE+ +A I    CI CG C   CP
Sbjct: 193 ERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKACP 252

Query: 52  VDAIKPDTE 60
             A +  ++
Sbjct: 253 FGAPQEQSD 261


>gi|257457555|ref|ZP_05622722.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
 gi|257444941|gb|EEV20017.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
          Length = 56

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +++ C+ C    C   CPV    E      I  D CI CG C   CP +AI
Sbjct: 1  MAYKISDACVNCG--ACEGECPVGAISEANGARVIDADACISCGACAGVCPTEAI 53


>gi|57505242|ref|ZP_00371171.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Campylobacter upsaliensis RM3195]
 gi|315639207|ref|ZP_07894369.1| formate dehydrogenase, oxidoreductase [Campylobacter upsaliensis
           JV21]
 gi|57016378|gb|EAL53163.1| probable formate dehydrogenase (iron-sulfur subunit) oxidoreductase
           protein [Campylobacter upsaliensis RM3195]
 gi|315480533|gb|EFU71175.1| formate dehydrogenase, oxidoreductase [Campylobacter upsaliensis
           JV21]
          Length = 213

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKP 57
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A + 
Sbjct: 65  SCMHCDDAPCAIVCPVDCFYIRGDGVVLHDKEICIGCGYCLYACPFGAPQF 115


>gi|325971008|ref|YP_004247199.1| hypothetical protein SpiBuddy_1180 [Spirochaeta sp. Buddy]
 gi|324026246|gb|ADY13005.1| protein of unknown function DUF362 [Spirochaeta sp. Buddy]
          Length = 372

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + CI C    C+++CP +        + I P  CI C  C   CP  AI  D 
Sbjct: 318 DPCIQC--RKCIDICPANALTMEHKRIIIDPSVCIRCYCCHEVCPASAIAVDE 368



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
              PD CI C  C   CP +A+  + +
Sbjct: 314 VFLPDPCIQCRKCIDICPANALTMEHK 340


>gi|261867201|ref|YP_003255123.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412533|gb|ACX81904.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 207

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP     +  +   I + + CI C  C   CP DA + D E
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICIGCRYCHMACPYDAPQFDAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C  T C   CPV C     +    I  ++CI CG C   CPV AIK
Sbjct: 576 YEITDECIGC--TKCSRACPVRCISGKIKGKHIIDQEKCIKCGTCFEGCPVKAIK 628


>gi|313905672|ref|ZP_07839033.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
 gi|313469496|gb|EFR64837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
          Length = 206

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT+NC  C    C+ VCP  C         I  + C+ CG C   CP  A+
Sbjct: 153 YFVTDNCTGCG--SCLSVCPQSCIITTRIPYVIEQEHCLHCGNCLNTCPAGAV 203


>gi|310830102|ref|YP_003962459.1| Ferredoxin [Eubacterium limosum KIST612]
 gi|308741836|gb|ADO39496.1| Ferredoxin [Eubacterium limosum KIST612]
          Length = 56

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M Y +T+ CI C    C + CPV+   EG     I    C DCG C  +CPV+AI P+ 
Sbjct: 1  MAYKITDECIACG--SCADQCPVEAISEGS-IYEIDEALCTDCGACADQCPVEAIVPED 56


>gi|117927911|ref|YP_872462.1| putative glutamate synthase (NADPH) small subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648374|gb|ABK52476.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 543

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           NC  C   +C  VCP       E  +  AI  D C  CG+C  ECPV AI+   EPG E
Sbjct: 484 NCFQCD--NCYAVCPDAAVLKVESGHGYAIDLDYCKGCGLCVAECPVGAIRTVPEPGTE 540


>gi|238919824|ref|YP_002933339.1| glutamate synthase family, small subunit, [Edwardsiella ictaluri
           93-146]
 gi|238869393|gb|ACR69104.1| glutamate synthase family, small subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 678

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C  VCP     +  + + +  ++CI C  C   CP  AI+
Sbjct: 56  CRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAIE 103


>gi|307594911|ref|YP_003901228.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Vulcanisaeta distributa DSM 14429]
 gi|307550112|gb|ADN50177.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 616

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TE 60
           YV  + C  C     +  CP     E      I P+ C+ C VC   CP +AIKP+   +
Sbjct: 549 YVDLDACKACGICYNLIACPAIVPLE-NRKAWIDPNMCVGCSVCAQVCPYNAIKPEGNVK 607

Query: 61  PGLELWLKI 69
             L+ W ++
Sbjct: 608 DWLKKWAEM 616


>gi|269139126|ref|YP_003295827.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
 gi|267984787|gb|ACY84616.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
          Length = 678

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C  VCP     +  + + +  ++CI C  C   CP  AI+
Sbjct: 56  CRHCEDAPCANVCPNGAIEKYNDSIQVRQEKCIGCKTCVVACPFGAIE 103


>gi|86607899|ref|YP_476661.1| transcriptional regulator PatB [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86556441|gb|ABD01398.1| transcriptional regulator PatB [Synechococcus sp.
          JA-2-3B'a(2-13)]
          Length = 550

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M Y ++ NCI C    CV+ CP       +    I+P  C DC        C   CP  A
Sbjct: 1  MAYQISGNCIGCN--ACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSA 58

Query: 55 IKP 57
           +P
Sbjct: 59 PQP 61


>gi|86606494|ref|YP_475257.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab]
 gi|86555036|gb|ABC99994.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab]
          Length = 550

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M Y ++ NCI C    CV+ CP       +    I+P  C DC        C   CP  A
Sbjct: 1  MAYQISGNCIGCN--ACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSA 58

Query: 55 IKP 57
           +P
Sbjct: 59 PQP 61


>gi|323978273|gb|EGB73359.1| dimethylsulfoxide reductase [Escherichia coli TW10509]
          Length = 205

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|331660380|ref|ZP_08361315.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
 gi|331052647|gb|EGI24683.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
          Length = 205

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|123443013|ref|YP_001006988.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          enterocolitica 8081]
 gi|122089974|emb|CAL12831.1| hydrogenase-4 component A [Yersinia enterocolitica subsp.
          enterocolitica 8081]
          Length = 213

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+      N + +    CI C +C   CP  AI P
Sbjct: 51 CRHCEDAWCARVCPVNAITLTNNAVELDETTCIGCKLCGIACPFGAITP 99


>gi|90411449|ref|ZP_01219460.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           profundum 3TCK]
 gi|90327662|gb|EAS44005.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           profundum 3TCK]
          Length = 204

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+   I   D CI C  CE  CP  A + + E
Sbjct: 59  SYYLSIACNHCDEPACTKVCPSGAMHKREDGFVIVDEDVCIGCKYCEMACPYGAPQYNEE 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|330834494|ref|YP_004409222.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
 gi|329566633|gb|AEB94738.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
          Length = 605

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI--K 56
             V +E C  C  T C +   CP     + EN    I+ +ECI CG C P CP  AI  +
Sbjct: 537 AVVDSERCTGC--TICYDHFTCP--AILKLENKKAVINQNECIGCGACVPVCPYKAITLE 592

Query: 57  PDTEPGLEL 65
            +   G + 
Sbjct: 593 GEKPEGWDE 601


>gi|315925900|ref|ZP_07922105.1| ferredoxin [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620721|gb|EFV00697.1| ferredoxin [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 56

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +++ CI C    C + CP +   EG     I  D CIDCG C  +CP+ AI P
Sbjct: 1  MAYTISDECISCG--ACADQCPTEAISEGSP-YVIDADACIDCGSCADQCPMGAIAP 54



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                DECI CG C  +CP +AI   + 
Sbjct: 1  MAYTISDECISCGACADQCPTEAISEGSP 29


>gi|197120163|ref|YP_002140590.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC/FeS domain-containing protein
          [Geobacter bemidjiensis Bem]
 gi|197089523|gb|ACH40794.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC and FeS domain-containing protein
          [Geobacter bemidjiensis Bem]
          Length = 759

 Score = 60.9 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +T++C  C    CV  CPV      +++  I  + CI CG C   CP  A
Sbjct: 6  TITDHCRKC--YSCVRSCPVKAIKVEKSYTEIIAERCIGCGNCMSHCPQHA 54


>gi|240948525|ref|ZP_04752898.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor NM305]
 gi|240297033|gb|EER47604.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           minor NM305]
          Length = 205

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYLSISCNHCSDPACTKVCPTGAMHKNEDGFVIVNEEICIGCRYCHMACPYDAPQYDAK 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|238784110|ref|ZP_04628124.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia bercovieri
           ATCC 43970]
 gi|238714956|gb|EEQ06954.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia bercovieri
           ATCC 43970]
          Length = 204

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D  
Sbjct: 59  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDET 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|315425433|dbj|BAJ47097.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Caldiarchaeum subterraneum]
          Length = 223

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C+   CVEVCPV+  ++  N    +  + CI CG C   CP  A
Sbjct: 90  FVPKMCNHCEEPSCVEVCPVNATFKAPNGEVLVDDNVCIGCGACIQNCPYGA 141


>gi|48675342|dbj|BAD22818.1| ferredoxin1 [Heliobacillus mobilis]
          Length = 55

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +++ C+ C    CV+ CPV    +G +   I+ D CIDCG C   CP  AI
Sbjct: 1  MAYKISDACVNCG--SCVDACPVGAIEKGSDIYCIN-DTCIDCGSCVDTCPAGAI 52


>gi|303244235|ref|ZP_07330572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302485362|gb|EFL48289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 170

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C    C EVCPV+     +  + +   +CI CG+C   CP  AI
Sbjct: 44 CQHCASAPCKEVCPVEAIENKDGVIYLDESKCIGCGLCAMACPFGAI 90


>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
 gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
          Length = 596

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+    + +    I  D+CI CG C  +CP  AI 
Sbjct: 542 YIAPDKCKGCG--ICAKNCPVNAISGKTKEPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CP     +      I PD+C  CG+C   CPV+AI   T+  
Sbjct: 530 CPAG-VCQALLRFYIAPDKCKGCGICAKNCPVNAISGKTKEP 570


>gi|327400962|ref|YP_004341801.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316470|gb|AEA47086.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 753

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV TENCI C    C EVC  +     E      I  + C  CG C   CPVDAI    
Sbjct: 552 AYV-TENCIGC--RLCAEVCRFNAVVIDERSGKAKIDANACAMCGACVAACPVDAIDMGF 608

Query: 60  EPGLELWLKINS 71
               ++  +I++
Sbjct: 609 FSEEQITAEIDA 620



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 18/80 (22%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPEC 50
           V ENC  C   DC  VCPVD F                   + AI  + CI C +C   C
Sbjct: 235 VNENCKGCI-EDCSSVCPVDVFDGVGIRKAVYIPFPQATPLYAAIDWENCIRCELCVKAC 293

Query: 51  PVDAIKPDTEPGLELWLKIN 70
             +AI  D     E  + IN
Sbjct: 294 KPNAI--DFNQKQEE-IDIN 310


>gi|323702453|ref|ZP_08114117.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532592|gb|EGB22467.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfotomaculum nigrificans DSM 574]
          Length = 448

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
          M   V+  C+ C    C+  CP +  +  +N +  +  D+C++CG C   CPV+A
Sbjct: 1  MAVNVSPACMGC--QACITTCPYEALFINDNGVCEVIKDKCVECGKCVEVCPVEA 53


>gi|282600017|ref|ZP_05972741.2| hydrogenase-4 component A [Providencia rustigianii DSM 4541]
 gi|282566781|gb|EFB72316.1| hydrogenase-4 component A [Providencia rustigianii DSM 4541]
          Length = 187

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP------DTEPG 62
          C  C    C  VCPV+      + + ++   CI C +C   CP  AI P      D    
Sbjct: 33 CRQCDDAPCARVCPVNAITHENDMIVLNESLCIGCKLCGLVCPFGAITPSGSKPVDMPDF 92

Query: 63 LELWL 67
           E ++
Sbjct: 93 FEQYV 97


>gi|333006115|gb|EGK25625.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-272]
 gi|333018950|gb|EGK38243.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-227]
          Length = 205

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|293391269|ref|ZP_06635603.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951803|gb|EFE01922.1| anaerobic dimethyl sulfoxide reductase chain B [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 205

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP     +  +   I + + CI C  C   CP DA + D E
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMQKNADGFVIVNEEICIGCRYCHMACPYDAPQFDAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|126739780|ref|ZP_01755471.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719012|gb|EBA15723.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 653

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           C++ CP        + + I P  C  CG C   CP  AI  D  P   L+L++
Sbjct: 281 CLDHCPTSAISPKGDHVTIDPMICAGCGACASLCPSGAITYDAPPASALFLRV 333



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           TE+C LC    C  +CP     +  +   L    D C+ CG+C   CP  AIK +
Sbjct: 502 TESCTLCL--SCASLCPSGALGDNPDLPQLRFQEDACLQCGICANLCPEQAIKLE 554


>gi|188586058|ref|YP_001917603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350745|gb|ACB85015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 70

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + +TE CI C    C++ CPVD   EGE   +I  D C +CG C  ECP DAI  +
Sbjct: 17 AFRITEECIACG--SCLDACPVDAIKEGEEIFSITED-CTECGSCVDECPTDAIVEE 70



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          +ECI CG C   CPVDAIK   E
Sbjct: 22 EECIACGSCLDACPVDAIKEGEE 44


>gi|320177371|gb|EFW52372.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella
           dysenteriae CDC 74-1112]
          Length = 205

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|288574184|ref|ZP_06392541.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569925|gb|EFC91482.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 372

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CILC    CVE+CP D     +  L    ++CI C  C   CP +AI+
Sbjct: 312 CILCG--RCVEICPADAITMRDRRLVFDYEKCIRCYCCHEMCPANAIR 357


>gi|152990320|ref|YP_001356042.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
 gi|151422181|dbj|BAF69685.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
          Length = 214

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C  +CPV   +  EN +  I  + CI C  C   CP  AI  D E
Sbjct: 57  CNHCEDAPCERICPVSALHYLENGIVNIDKERCIGCAGCMMACPYGAIYMDPE 109


>gi|225175583|ref|ZP_03729577.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
          alkaliphilus AHT 1]
 gi|225168912|gb|EEG77712.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
          alkaliphilus AHT 1]
          Length = 400

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          ++ + CI C+   C++ CP     E ++ +A+  D+C  CG C   CP DAI+ +   
Sbjct: 5  IIVDECIGCE--ACIDACPFPGAVEMKDDVAVLTDKCTGCGACADACPSDAIEVEETE 60


>gi|134045121|ref|YP_001096607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132662746|gb|ABO34392.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 138

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C+   C+ VCP D   + ++ + I  ++CI C +C   CPV AI+ D
Sbjct: 35 CMHCEDAPCLNVCPEDAIKKIDDKVVIESEKCIGCALCAEVCPVGAIQID 84


>gi|74312090|ref|YP_310509.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|73855567|gb|AAZ88274.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|323164414|gb|EFZ50217.1| dimethylsulfoxide reductase, chain B [Shigella sonnei 53G]
          Length = 205

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|282859228|ref|ZP_06268350.1| ferredoxin [Prevotella bivia JCVIHMP010]
 gi|282588047|gb|EFB93230.1| ferredoxin [Prevotella bivia JCVIHMP010]
          Length = 55

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV+   EG +  +I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCIDECPVEAISEG-DIYSIDADACTECGTCASVCPNEAI 52


>gi|225175969|ref|ZP_03729961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168557|gb|EEG77359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 369

 Score = 60.9 bits (147), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C +C  + C++ CP D     E    I  D+CI CG C   CP  AIK   +   
Sbjct: 191 VKGEGCKVC--STCLKWCPADAILIMEETAEIDHDKCIGCGECTVVCPTRAIKIQWKSET 248

Query: 64  ELWLKINSEYATQWPNITTK 83
               +  +EYA  W  I  K
Sbjct: 249 VDVQERMAEYA--WGAIKDK 266


>gi|161170223|gb|ABX59194.1| FeS cluster containing hydrogenase components 1 [uncultured marine
           group II euryarchaeote EF100_57A08]
          Length = 470

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+ + C  +CP    +  E+ +     D CI C  C   CP DA+  D   G
Sbjct: 58  CNHCEDSPCTTICPTTALFTREDGIVDFDDDRCIGCKSCMQACPYDALYIDPNKG 112



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 23/70 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCG---------VCEPECPV 52
           + CI CK   C++ CP D        L I P++     C  C           C   CP 
Sbjct: 88  DRCIGCK--SCMQACPYDA-------LYIDPNKGTAAKCNYCAHRIEHSYEPACVIVCPT 138

Query: 53  DAIKPDTEPG 62
           +AI       
Sbjct: 139 EAIVSGDLDD 148


>gi|45359066|ref|NP_988623.1| pyruvate oxidoreductase-associated [Methanococcus maripaludis S2]
 gi|45047941|emb|CAF31059.1| conserved archaeal protein, pyruvate oxidoreductase-associated
          [Methanococcus maripaludis S2]
          Length = 167

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C+EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMEVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|309701815|emb|CBJ01127.1| putative anaerobic dimethyl sulfoxide reductase, Fe-S subunit
           [Escherichia coli ETEC H10407]
          Length = 205

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|332097983|gb|EGJ02956.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 155-74]
          Length = 184

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|30063104|ref|NP_837275.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|30041353|gb|AAP17082.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|281601024|gb|ADA74008.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Shigella flexneri 2002017]
 gi|313649044|gb|EFS13480.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2a str.
           2457T]
 gi|332757173|gb|EGJ87511.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 4343-70]
 gi|332758411|gb|EGJ88732.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-671]
 gi|332766983|gb|EGJ97182.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2930-71]
 gi|333003851|gb|EGK23386.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-218]
 gi|333005235|gb|EGK24755.1| dimethylsulfoxide reductase, chain B [Shigella flexneri VA-6]
 gi|333017930|gb|EGK37235.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-304]
          Length = 205

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|289191965|ref|YP_003457906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938415|gb|ADC69170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 164

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C    C EVCPV      + ++ ++ + CI CG+C   CP  AI  + + 
Sbjct: 44 CQHCASAPCKEVCPVSAIEHKDGYVYLNEEICIGCGLCALACPFGAIIMEDKA 96


>gi|15802003|ref|NP_288024.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           EDL933]
 gi|15831549|ref|NP_310322.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|16129547|ref|NP_416106.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|26247834|ref|NP_753874.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           CFT073]
 gi|82776844|ref|YP_403193.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|89108430|ref|AP_002210.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|91210799|ref|YP_540785.1| Fe-S subunit oxidoreductase [Escherichia coli UTI89]
 gi|117623775|ref|YP_852688.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli APEC O1]
 gi|157161048|ref|YP_001458366.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|168750603|ref|ZP_02775625.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168757500|ref|ZP_02782507.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168763713|ref|ZP_02788720.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168771685|ref|ZP_02796692.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168775813|ref|ZP_02800820.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168783406|ref|ZP_02808413.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168789420|ref|ZP_02814427.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168800843|ref|ZP_02825850.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170020058|ref|YP_001725012.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|170081253|ref|YP_001730573.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191165925|ref|ZP_03027762.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|193064916|ref|ZP_03045992.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|193066892|ref|ZP_03047861.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194426027|ref|ZP_03058583.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194436394|ref|ZP_03068495.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|195938978|ref|ZP_03084360.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208810651|ref|ZP_03252527.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208817045|ref|ZP_03258165.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821725|ref|ZP_03262045.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399816|ref|YP_002270660.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209918901|ref|YP_002292985.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE11]
 gi|215486764|ref|YP_002329195.1| oxidoreductase, Fe-S subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328606|ref|ZP_03444687.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|218554156|ref|YP_002387069.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI1]
 gi|218558459|ref|YP_002391372.1| oxidoreductase, Fe-S subunit [Escherichia coli S88]
 gi|218689509|ref|YP_002397721.1| oxidoreductase, Fe-S subunit [Escherichia coli ED1a]
 gi|218695151|ref|YP_002402818.1| oxidoreductase, Fe-S subunit [Escherichia coli 55989]
 gi|218699845|ref|YP_002407474.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI39]
 gi|218705088|ref|YP_002412607.1| oxidoreductase, Fe-S subunit [Escherichia coli UMN026]
 gi|227886054|ref|ZP_04003859.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|237705528|ref|ZP_04536009.1| dimethylsulfoxide reductase subunit [Escherichia sp. 3_2_53FAA]
 gi|238900804|ref|YP_002926600.1| oxidoreductase, Fe-S subunit [Escherichia coli BW2952]
 gi|253773455|ref|YP_003036286.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161650|ref|YP_003044758.1| oxidoreductase, Fe-S subunit [Escherichia coli B str. REL606]
 gi|254793206|ref|YP_003078043.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018219|ref|ZP_05432084.1| oxidoreductase, Fe-S subunit [Shigella sp. D9]
 gi|256022751|ref|ZP_05436616.1| oxidoreductase, Fe-S subunit [Escherichia sp. 4_1_40B]
 gi|260843893|ref|YP_003221671.1| oxidoreductase, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|260855390|ref|YP_003229281.1| oxidoreductase, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|260868080|ref|YP_003234482.1| oxidoreductase, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|261227967|ref|ZP_05942248.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258299|ref|ZP_05950832.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282721|ref|YP_003499539.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. CB9615]
 gi|293405090|ref|ZP_06649082.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1412]
 gi|293409899|ref|ZP_06653475.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414905|ref|ZP_06657548.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           B185]
 gi|293445963|ref|ZP_06662385.1| dimethyl sulfoxide reductase subunit YnfG [Escherichia coli B088]
 gi|298380736|ref|ZP_06990335.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1302]
 gi|301029227|ref|ZP_07192340.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|306813449|ref|ZP_07447639.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli NC101]
 gi|307138239|ref|ZP_07497595.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli H736]
 gi|307310841|ref|ZP_07590487.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|309788770|ref|ZP_07683366.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|312966654|ref|ZP_07780874.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|312969603|ref|ZP_07783786.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|331642172|ref|ZP_08343307.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331647075|ref|ZP_08348169.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|331652977|ref|ZP_08353982.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331663058|ref|ZP_08363968.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331668261|ref|ZP_08369109.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331677447|ref|ZP_08378122.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331683095|ref|ZP_08383696.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332279270|ref|ZP_08391683.1| oxidoreductase [Shigella sp. D9]
 gi|77416847|sp|P0AAJ2|YNFG_ECOL6 RecName: Full=Probable anaerobic dimethyl sulfoxide reductase chain
           ynfG; AltName: Full=DMSO reductase iron-sulfur subunit
           ynfG
 gi|77416848|sp|P0AAJ1|YNFG_ECOLI RecName: Full=Probable anaerobic dimethyl sulfoxide reductase chain
           ynfG; AltName: Full=DMSO reductase iron-sulfur subunit
           ynfG
 gi|12515564|gb|AAG56576.1|AE005382_10 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|26108237|gb|AAN80439.1|AE016761_14 Probable anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli CFT073]
 gi|1742612|dbj|BAA15313.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|1787872|gb|AAC74661.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13361761|dbj|BAB35718.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|81240992|gb|ABB61702.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|91072373|gb|ABE07254.1| Fe-S subunit oxidoreductase [Escherichia coli UTI89]
 gi|115512899|gb|ABJ00974.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli APEC O1]
 gi|157066728|gb|ABV05983.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|169754986|gb|ACA77685.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|169889088|gb|ACB02795.1| oxidoreductase, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187768665|gb|EDU32509.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188015250|gb|EDU53372.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188999242|gb|EDU68228.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189355556|gb|EDU73975.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189359615|gb|EDU78034.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189366172|gb|EDU84588.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189370961|gb|EDU89377.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189376913|gb|EDU95329.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190904056|gb|EDV63768.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|192927403|gb|EDV82021.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|192959482|gb|EDV89916.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194416082|gb|EDX32348.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194424426|gb|EDX40412.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|208725167|gb|EDZ74874.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731388|gb|EDZ80077.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741848|gb|EDZ89530.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161216|gb|ACI38649.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209770048|gb|ACI83336.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770050|gb|ACI83337.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770052|gb|ACI83338.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770054|gb|ACI83339.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209770056|gb|ACI83340.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209912160|dbj|BAG77234.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE11]
 gi|215264836|emb|CAS09221.1| oxidoreductase, Fe-S subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217317953|gb|EEC26380.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|218351883|emb|CAU97608.1| oxidoreductase, Fe-S subunit [Escherichia coli 55989]
 gi|218360924|emb|CAQ98496.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI1]
 gi|218365228|emb|CAR02949.1| oxidoreductase, Fe-S subunit [Escherichia coli S88]
 gi|218369831|emb|CAR17602.1| oxidoreductase, Fe-S subunit [Escherichia coli IAI39]
 gi|218427073|emb|CAR07952.2| oxidoreductase, Fe-S subunit [Escherichia coli ED1a]
 gi|218432185|emb|CAR13073.1| oxidoreductase, Fe-S subunit [Escherichia coli UMN026]
 gi|222033347|emb|CAP76088.1| anaerobic dimethyl sulfoxide reductase chain [Escherichia coli
           LF82]
 gi|226900285|gb|EEH86544.1| dimethylsulfoxide reductase subunit [Escherichia sp. 3_2_53FAA]
 gi|227836983|gb|EEJ47449.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|238861969|gb|ACR63967.1| oxidoreductase, Fe-S subunit [Escherichia coli BW2952]
 gi|242377320|emb|CAQ32065.1| oxidoreductase, predicted Fe-S subunit, subunit of putative
           selenate reductase [Escherichia coli BL21(DE3)]
 gi|253324499|gb|ACT29101.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973551|gb|ACT39222.1| oxidoreductase, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253977746|gb|ACT43416.1| oxidoreductase, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|254592606|gb|ACT71967.1| oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|257754039|dbj|BAI25541.1| oxidoreductase, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|257759040|dbj|BAI30537.1| oxidoreductase, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|257764436|dbj|BAI35931.1| oxidoreductase, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|260449289|gb|ACX39711.1| dimethylsulfoxide reductase, chain B [Escherichia coli DH1]
 gi|281178659|dbj|BAI54989.1| putative dimethyl sulfoxide reductase Fe-S subunit [Escherichia
           coli SE15]
 gi|290762594|gb|ADD56555.1| Probable anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. CB9615]
 gi|291322793|gb|EFE62221.1| dimethyl sulfoxide reductase subunit YnfG [Escherichia coli B088]
 gi|291427298|gb|EFF00325.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1412]
 gi|291432553|gb|EFF05532.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           B185]
 gi|291470367|gb|EFF12851.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491574|gb|ADE90330.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           IHE3034]
 gi|298278178|gb|EFI19692.1| anaerobic dimethyl sulfoxide reductase chain ynfG [Escherichia coli
           FVEC1302]
 gi|299877863|gb|EFI86074.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|305853194|gb|EFM53634.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli NC101]
 gi|306909019|gb|EFN39515.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|307553559|gb|ADN46334.1| dimethylsulfoxide reductase, B subunit [Escherichia coli ABU 83972]
 gi|307626925|gb|ADN71229.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli UM146]
 gi|308923404|gb|EFP68915.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|310337888|gb|EFQ02977.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|312288764|gb|EFR16664.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|312946189|gb|ADR27016.1| oxidoreductase, Fe-S subunit [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315060895|gb|ADT75222.1| oxidoreductase, Fe-S subunit [Escherichia coli W]
 gi|315136229|dbj|BAJ43388.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli DH1]
 gi|315619043|gb|EFU99625.1| dimethylsulfoxide reductase, chain B [Escherichia coli 3431]
 gi|320188273|gb|EFW62935.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197771|gb|EFW72379.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           EC4100B]
 gi|320641943|gb|EFX11307.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H7 str. G5101]
 gi|320647259|gb|EFX16067.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H- str. 493-89]
 gi|320652552|gb|EFX20821.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H- str. H 2687]
 gi|320653073|gb|EFX21267.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320658761|gb|EFX26435.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668612|gb|EFX35417.1| putative anaerobic dimethyl sulfoxide reductase chain ynfG
           [Escherichia coli O157:H7 str. LSU-61]
 gi|323152910|gb|EFZ39180.1| dimethylsulfoxide reductase, chain B [Escherichia coli EPECa14]
 gi|323163340|gb|EFZ49167.1| dimethylsulfoxide reductase, chain B [Escherichia coli E128010]
 gi|323169880|gb|EFZ55536.1| dimethylsulfoxide reductase, chain B [Escherichia coli LT-68]
 gi|323180903|gb|EFZ66441.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1180]
 gi|323185873|gb|EFZ71230.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1357]
 gi|323187212|gb|EFZ72526.1| dimethylsulfoxide reductase, chain B [Escherichia coli RN587/1]
 gi|323378536|gb|ADX50804.1| dimethylsulfoxide reductase, chain B [Escherichia coli KO11]
 gi|323937383|gb|EGB33661.1| dimethylsulfoxide reductase [Escherichia coli E1520]
 gi|323940336|gb|EGB36528.1| dimethylsulfoxide reductase [Escherichia coli E482]
 gi|323947977|gb|EGB43971.1| dimethylsulfoxide reductase [Escherichia coli H120]
 gi|323952573|gb|EGB48445.1| dimethylsulfoxide reductase [Escherichia coli H252]
 gi|323956753|gb|EGB52488.1| dimethylsulfoxide reductase [Escherichia coli H263]
 gi|323962219|gb|EGB57811.1| dimethylsulfoxide reductase [Escherichia coli H489]
 gi|323973778|gb|EGB68952.1| dimethylsulfoxide reductase [Escherichia coli TA007]
 gi|324119343|gb|EGC13230.1| dimethylsulfoxide reductase [Escherichia coli E1167]
 gi|326341954|gb|EGD65735.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
 gi|326343504|gb|EGD67266.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|330911395|gb|EGH39905.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           AA86]
 gi|331038970|gb|EGI11190.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331043858|gb|EGI15994.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|331049075|gb|EGI21147.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331058857|gb|EGI30834.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331063455|gb|EGI35366.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331073907|gb|EGI45227.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331079310|gb|EGI50507.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332091391|gb|EGI96477.1| dimethylsulfoxide reductase, chain B [Shigella boydii 5216-82]
 gi|332101622|gb|EGJ04968.1| oxidoreductase [Shigella sp. D9]
 gi|332343306|gb|AEE56640.1| dimethylsulfoxide reductase, chain B DmsB [Escherichia coli UMNK88]
          Length = 205

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|319936847|ref|ZP_08011259.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
 gi|319808115|gb|EFW04687.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
          Length = 366

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV + CI C    C+++C  D     ++  +I+ D+C+ CG C   CP DAIK   +  
Sbjct: 190 VVQDLCIGCGQ--CIKICAHDAPTITDHKASINHDKCVGCGRCIGVCPKDAIKASMDEA 246


>gi|327400970|ref|YP_004341809.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316478|gb|AEA47094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 127

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C+ +CPV+     GE  + I+  +CI CG C   CPV A+K
Sbjct: 77  EKCIHCG--ACISICPVEAIELNGEKKVVINASKCIHCGNCVNVCPVKALK 125



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIK 56
          E  +    ++CI CG C   CPV+AI+
Sbjct: 69 ERAVEKDEEKCIHCGACISICPVEAIE 95


>gi|254884686|ref|ZP_05257396.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837479|gb|EET17788.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 488

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI  
Sbjct: 117 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVY 173



 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I  ++CI CG C   CP
Sbjct: 154 DTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACP 213

Query: 52  VDAIKP 57
             AI  
Sbjct: 214 FGAIFE 219


>gi|238018929|ref|ZP_04599355.1| hypothetical protein VEIDISOL_00789 [Veillonella dispar ATCC
          17748]
 gi|313892975|ref|ZP_07826552.1| ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
 gi|237864413|gb|EEP65703.1| hypothetical protein VEIDISOL_00789 [Veillonella dispar ATCC
          17748]
 gi|313442328|gb|EFR60743.1| ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
          Length = 54

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV    EGE    I+ D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKCG--SCASVCPVSAISEGETKYEIN-DTCIDCGSCESVCPVSVISAE 54


>gi|237730860|ref|ZP_04561341.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
 gi|226906399|gb|EEH92317.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
          Length = 205

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|220932266|ref|YP_002509174.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
 gi|219993576|gb|ACL70179.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
          Length = 331

 Score = 60.6 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C    C  VCPVD     +N   I  D+CI+CG+C  +CP  AI+ +
Sbjct: 217 CIGCG--ICARVCPVDAITIEDNLAVIDYDKCINCGLCAEKCPTGAIEFE 264



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C    C E CP     +EG     IH  D+C+ C  C   CPVDAI+   +   E
Sbjct: 244 DKCINCGL--CAEKCPTGAIEFEGRRIEEIHITDKCVGCTRCARACPVDAIEGSLKEKHE 301



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV-DAIK 56
           +T+ C+ C  T C   CPVD      +    I+P+ C+ CG+C   C V  AI+
Sbjct: 273 ITDKCVGC--TRCARACPVDAIEGSLKEKHEINPETCVKCGICYDTCKVKGAIE 324



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            DCV VCP D     EN L  ++ D+C  CG C   CP   I
Sbjct: 146 GDCVAVCPFDAIEMNENGLPEVNYDKCTGCGKCVEACPRGII 187


>gi|266619158|ref|ZP_06112093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
 gi|288869304|gb|EFD01603.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
          Length = 425

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C+ C    C +VCPV      EGEN      ++ + C+ CGVC   C V AI+    P
Sbjct: 293 ERCVGCG--KCAKVCPVLAVSMEEGENGKKKAVVNKEICLGCGVCARNCAVKAIELQRRP 350

Query: 62  GL 63
             
Sbjct: 351 EQ 352



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           P+           I  + C+ CG C   CPV A+  +     +    +N E
Sbjct: 277 PMQPVATTNYIPEISLERCVGCGKCAKVCPVLAVSMEEGENGKKKAVVNKE 327


>gi|300869677|ref|YP_003784548.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli
           95/1000]
 gi|300687376|gb|ADK30047.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli
           95/1000]
          Length = 490

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT+ C  C    C+  CP +      E    I   +CI+CG+C   CP  AI
Sbjct: 112 FMVTDACQACLARPCMMNCPKNAITILDEKRAYIDSSKCINCGLCLKNCPYHAI 165



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 15/68 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            Y+ +  CI C                  C E CPV    + E     I   +CI CG C
Sbjct: 143 AYIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNC 202

Query: 47  EPECPVDA 54
             ECP  A
Sbjct: 203 MRECPFSA 210


>gi|237709652|ref|ZP_04540133.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456288|gb|EEO62009.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 487

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI  
Sbjct: 117 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVY 173



 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I  ++CI CG C   CP
Sbjct: 154 DTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACP 213

Query: 52  VDAIKP 57
             AI  
Sbjct: 214 FGAIFE 219


>gi|237725194|ref|ZP_04555675.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754284|ref|ZP_06089473.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436460|gb|EEO46537.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|263234993|gb|EEZ20548.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 487

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI  
Sbjct: 117 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVY 173



 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I  ++CI CG C   CP
Sbjct: 154 DTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACP 213

Query: 52  VDAIKP 57
             AI  
Sbjct: 214 FGAIFE 219


>gi|225575176|ref|ZP_03783786.1| hypothetical protein RUMHYD_03265 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037609|gb|EEG47855.1| hypothetical protein RUMHYD_03265 [Blautia hydrogenotrophica DSM
           10507]
          Length = 317

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  CK    ++ CPV+     +    I PD C +CG C   C  DA++ + +PG +++
Sbjct: 172 DECNGCKKCSVIDACPVNAVKMVDGVAEIDPDICTNCGRCIGHCHFDALE-EGKPGFKIY 230

Query: 67  L 67
           +
Sbjct: 231 I 231


>gi|227355510|ref|ZP_03839905.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|227164306|gb|EEI49195.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 205

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+VCP    ++ E+ F+ ++ + CI C  C   CP  A + D 
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQFDE 118


>gi|91201718|emb|CAJ74778.1| strongly similar to ferredoxin [Candidatus Kuenenia
          stuttgartiensis]
          Length = 56

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + + E CI C    C   CPV+   E  +   I    C DCG C   CPVDAI
Sbjct: 1  MAHSINEECINC--AACESECPVEAISEAGDVRVIDESTCTDCGNCVSVCPVDAI 53


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C  + C  VCPV     E +    I+PD+CI CG C   CP  A+K 
Sbjct: 576 CKGC--SKCSRVCPVGAISGEIKKPFTINPDKCIKCGACVEACPFKAVKE 623



 Score = 40.5 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 12/78 (15%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNI 80
           CP     +     AI    C  C  C   CPV AI  + +              T  P+ 
Sbjct: 558 CPAG-VCQALKRYAIDATVCKGCSKCSRVCPVGAISGEIKKP-----------FTINPDK 605

Query: 81  TTKKESLPSAAKMDGVKQ 98
             K  +   A     VK+
Sbjct: 606 CIKCGACVEACPFKAVKE 623


>gi|295111792|emb|CBL28542.1| Uncharacterized Fe-S center protein [Synergistetes bacterium SGP1]
          Length = 370

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  E CI C    CV +C  D  +        I  D C+ CG C   CPVDA+ PD +
Sbjct: 191 PHVEQEKCICCG--RCVRICAHDAPHVTPGRGATIDHDRCVGCGRCIGACPVDAVAPDYD 248

Query: 61  PGLE 64
              +
Sbjct: 249 EAFD 252


>gi|167748586|ref|ZP_02420713.1| hypothetical protein ANACAC_03359 [Anaerostipes caccae DSM 14662]
 gi|167651900|gb|EDR96029.1| hypothetical protein ANACAC_03359 [Anaerostipes caccae DSM 14662]
          Length = 216

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++TE CI C    C +VCP  C  EG+    I  + C+ CG+C+ +CP  AI+
Sbjct: 162 FLITEACIGCG--TCRDVCPQQCISEGKP-YKIQQEHCLHCGLCKEQCPAGAIQ 212


>gi|253582598|ref|ZP_04859819.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
 gi|251835468|gb|EES64008.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
          Length = 333

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  CI C    C + CPVD      N   I P++CI CG+C  +CP +AIK + + 
Sbjct: 215 STACIGCGL--CKKACPVDAITVENNLAKIDPEKCIQCGLCAAKCPTNAIKSEIKE 268



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C+ C  T C +VCPV     E +    I  ++CI CG+C  +C + AIK
Sbjct: 274 IIEEKCVGC--TLCAKVCPVGAVEGELKAKHKIDQEKCIGCGLCFDKCKLKAIK 325



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            H DC  VCPV+     +  +  ++ D+CI CG+C+  CP   I
Sbjct: 145 GHGDCERVCPVNAIKVNDKGIAEVNEDKCISCGLCQKACPKKVI 188



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    C   CP +      +      I  ++C+ C +C   CPV A++ + +   
Sbjct: 245 EKCIQCGL--CAAKCPTNAIKSEIKEVKKAEIIEEKCVGCTLCAKVCPVGAVEGELKAKH 302

Query: 64  E 64
           +
Sbjct: 303 K 303


>gi|150402670|ref|YP_001329964.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033700|gb|ABR65813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 138

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C+   C+  CP D   + ++ + I P++CI C +C   CPV AI+ D
Sbjct: 35 CMHCEDAPCLNACPEDAIKKIDDKVIIEPEKCIGCALCAEVCPVGAIQID 84


>gi|257470438|ref|ZP_05634529.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064646|ref|ZP_07929131.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313690322|gb|EFS27157.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 333

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +  CI C    C + CPVD      N   I P++CI CG+C  +CP +AIK + + 
Sbjct: 215 STACIGCGL--CKKACPVDAITVENNLAKIDPEKCIQCGLCAAKCPTNAIKSEIKE 268



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C+ C  T C +VCPV     E +    I  ++CI CG+C  +C + AIK
Sbjct: 274 IIEEKCVGC--TLCAKVCPVGAVEGELKAKHKIDQEKCIGCGLCFDKCKLKAIK 325



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            H DC  VCPV+     +  +  +  D+CI CG+C+  CP   I
Sbjct: 145 GHGDCERVCPVNAIKVNDKGIAEVDEDKCISCGLCQKACPKKVI 188



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    C   CP +      +      I  ++C+ C +C   CPV A++ + +   
Sbjct: 245 EKCIQCGL--CAAKCPTNAIKSEIKEIKKAEIIEEKCVGCTLCAKVCPVGAVEGELKAKH 302

Query: 64  E 64
           +
Sbjct: 303 K 303


>gi|258515175|ref|YP_003191397.1| Electron transfer flavoprotein alpha/beta- subunit
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257778880|gb|ACV62774.1| Electron transfer flavoprotein alpha/beta- subunit
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 441

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
          MT  V+  CI C    C+  CP    Y  +N L   I    CI+CG C   CPV AI
Sbjct: 1  MTVNVSNTCIGC--QACISACPHGALYIDDNGLCKVI-AKNCIECGGCIGVCPVGAI 54



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C  C   CP  A+  D  
Sbjct: 7  NTCIGCQACISACPHGALYIDDN 29


>gi|229585998|ref|YP_002844500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228021048|gb|ACP56455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 398

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|281356040|ref|ZP_06242533.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
 gi|281317409|gb|EFB01430.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
          Length = 463

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ +C+ C    CV VCP            I   +CI+CG C   CP  AI
Sbjct: 111 VSNSCVGCFARPCVGVCPKQAIQVINQRSTIDRTKCINCGKCMTVCPYHAI 161



 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 15/62 (24%)

Query: 9   CILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           CI C                  C + CPV    +GE+    I    CI CG C   CP  
Sbjct: 146 CINCGKCMTVCPYHAIIRNPLPCEDACPVGAIGKGEDGRVRIDFKNCIYCGKCFRACPFS 205

Query: 54  AI 55
           AI
Sbjct: 206 AI 207


>gi|150399563|ref|YP_001323330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012266|gb|ABR54718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 166

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C EVCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCSEVCPVSAIESKDGVIYLDKETCIGCGLCAMACPFGAIY 91


>gi|238791355|ref|ZP_04634994.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
 gi|238729488|gb|EEQ21003.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
          Length = 205

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D  
Sbjct: 60  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDEA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|317470852|ref|ZP_07930233.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901679|gb|EFV23612.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 216

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +++TE CI C    C +VCP  C  EG+    I  + C+ CG+C+ +CP  AI+
Sbjct: 162 FLITEACIGCG--TCRDVCPQQCISEGKP-YKIQQEHCLHCGLCKEQCPAGAIQ 212


>gi|311280101|ref|YP_003942332.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1]
 gi|308749296|gb|ADO49048.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1]
          Length = 646

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    CV  CP       +N + ++   CI C  C   CP  AI+
Sbjct: 56  CRHCNDAPCVASCPTHALRFDDNSVQLNQTLCIGCKNCAIACPFGAIE 103


>gi|292494297|ref|YP_003533440.1| molybdopterin oxidoreductase [Haloferax volcanii DS2]
 gi|291369264|gb|ADE01494.1| molybdopterin oxidoreductase [Haloferax volcanii DS2]
          Length = 273

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M+Y  T  C  C +  CV+VCPV+  Y  E+ +  I  D+CI C  C   CP +A   + 
Sbjct: 64  MSYQPT-ACQHCDNAPCVKVCPVNATYTREDGIVEIDYDKCIGCRYCMAACPYNARVFNW 122

Query: 60  EPGL 63
           +   
Sbjct: 123 DEPQ 126


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T C+ VC VD          I   D+CI CG C   C  DAI
Sbjct: 559 YYITDDCKGC--TKCMNVCAVDAINGQVRSRHIIDADKCIRCGACRKICSFDAI 610


>gi|227826744|ref|YP_002828523.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|229583908|ref|YP_002842409.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238618839|ref|YP_002913664.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
 gi|227458539|gb|ACP37225.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|228018957|gb|ACP54364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238379908|gb|ACR40996.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
          Length = 363

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W + N     +W
Sbjct: 326 DYRRPYEMWKE-NKAKYKEW 344


>gi|227829378|ref|YP_002831157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|229578177|ref|YP_002836575.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284996746|ref|YP_003418513.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
 gi|227455825|gb|ACP34512.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|228008891|gb|ACP44653.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284444641|gb|ADB86143.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
          Length = 363

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W + N     +W
Sbjct: 326 DYRRPYEMWKE-NKAKYKEW 344


>gi|187924671|ref|YP_001896313.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phytofirmans PsJN]
 gi|187715865|gb|ACD17089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phytofirmans PsJN]
          Length = 413

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPDT 59
           E CI C    C E CPVD     +N   +  + C  C  C P CP  AI       K D 
Sbjct: 18  EICIRCN--TCEETCPVDAITHDDNNYVVKAEICNGCMACVPPCPTGAIDNWRTVLKADA 75

Query: 60  EPGLELWLKINSEYATQWPNITTKKE-SLPSAAKMDG 95
            P  E +          W  +  +   ++P+A ++ G
Sbjct: 76  YPIEEQF---------TWDVLPEQNTMAVPAADELPG 103



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDDN 40


>gi|317405896|gb|EFV86178.1| ferredoxin-NADP oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 415

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E CI C    C E CP+D      N   + PD C  C  C P CP  +I         L 
Sbjct: 18 EICIRCN--TCEETCPIDAITHDSNNYVVDPDICNSCMACVPPCPTGSI-----DNWRLV 70

Query: 67 LKINSEYATQ----WPNITTKKESLPSAA 91
          L+ ++ Y+ Q    W  +  +++ LP AA
Sbjct: 71 LRSDA-YSVQDQLGWDELP-REQPLPEAA 97



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D+ 
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDSN 40


>gi|289423315|ref|ZP_06425123.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156246|gb|EFD04903.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 55

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YV+ ++CI C    C   CPV C  +G +  +I    CIDCG C   CPVDA +P+
Sbjct: 1  MAYVIKDSCIACG--ACAAECPVSCISDG-DIYSIDASACIDCGSCAGVCPVDAPQPE 55



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             +  D CI CG C  ECPV  I    
Sbjct: 1  MAYVIKDSCIACGACAAECPVSCISDGD 28


>gi|283953866|ref|ZP_06371396.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794645|gb|EFC33384.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 213

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 118


>gi|227828791|ref|YP_002830571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238620983|ref|YP_002915809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|227460587|gb|ACP39273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238382053|gb|ACR43141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 398

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|229583141|ref|YP_002841540.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
 gi|228013857|gb|ACP49618.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
          Length = 363

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W + N     +W
Sbjct: 326 DYRRPYEMWKE-NKAKYKEW 344


>gi|51893221|ref|YP_075912.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856910|dbj|BAD41068.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
          Length = 256

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V   C+ C    C  VCPV   Y+GE+ +  I  D CI C  C   CP  A
Sbjct: 101 VPRPCMQCDSPPCAGVCPVGATYKGESGIVVIDDDRCIGCRYCIAACPYGA 151


>gi|294776604|ref|ZP_06742073.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|319642355|ref|ZP_07997010.1| hydrogenase [Bacteroides sp. 3_1_40A]
 gi|294449519|gb|EFG18050.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|317386015|gb|EFV66939.1| hydrogenase [Bacteroides sp. 3_1_40A]
          Length = 481

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T+ C  C    C   CP    +         I  D CI CG+C   CP  AI  
Sbjct: 110 YEITDLCRGCTARSCQYNCPKGAVHVHADTGKAWIDHDTCISCGICHKSCPYHAIVY 166



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I  ++CI CG C   CP
Sbjct: 147 DTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCMNACP 206

Query: 52  VDAIKP 57
             AI  
Sbjct: 207 FGAIFE 212


>gi|291532617|emb|CBL05730.1| Uncharacterized Fe-S center protein [Megamonas hypermegale ART12/1]
          Length = 375

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T+ C+ C    C  +C        +    I PD+C+ CG C   C  DAIKP
Sbjct: 193 VDTDKCVGCG--ACSRICAHGAPIITDRKCYIDPDKCLGCGRCIGACHFDAIKP 244


>gi|134299396|ref|YP_001112892.1| electron transfer flavoprotein subunit beta [Desulfotomaculum
          reducens MI-1]
 gi|134052096|gb|ABO50067.1| electron transfer flavoprotein beta-subunit [Desulfotomaculum
          reducens MI-1]
          Length = 439

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M   V+  C+ C    C+  CP +  F        + P++C+DCG C   CPV+A
Sbjct: 1  MAVKVSSACMGC--QACITSCPHEALFMNDAGVCQVIPEKCVDCGECVEVCPVEA 53


>gi|333006700|gb|EGK26199.1| dimethylsulfoxide reductase, chain B [Shigella flexneri VA-6]
          Length = 205

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCHYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|255011300|ref|ZP_05283426.1| putative hydrogenase [Bacteroides fragilis 3_1_12]
 gi|313149111|ref|ZP_07811304.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137878|gb|EFR55238.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 489

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y +T  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + EN +  I  ++CI CG C   CP
Sbjct: 150 DACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDENKCIYCGKCLNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|242238729|ref|YP_002986910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech703]
 gi|242130786|gb|ACS85088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          dadantii Ech703]
          Length = 208

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C +VCPV+     ++ + +  + C+ C +C   CP  AI P
Sbjct: 51 CRHCEDAPCAKVCPVNAIRHEDHAVMLDENACVGCKLCAIACPFGAITP 99


>gi|154148560|ref|YP_001406021.1| formate dehydrogenase iron-sulfur subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153804569|gb|ABS51576.1| formate dehydrogenase iron-sulfur subunit [Campylobacter hominis
           ATCC BAA-381]
          Length = 187

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           Y  T  C  C    C +VCPV CFY   + + +H   +CI CG C   CP  A +   + 
Sbjct: 50  YSSTLACQHCTDAPCAQVCPVKCFYIRADGIVLHDKKKCIGCGYCLYACPFGAPQFPRDG 109

Query: 62  GLELWLKIN 70
              +  +++
Sbjct: 110 AFGIKGEMD 118


>gi|158520473|ref|YP_001528343.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509299|gb|ABW66266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 361

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C  C+   C ++CP++     ++   +    CI CGVC   CP DA+  +   
Sbjct: 293 ARVDADTCTGCE--ACADICPMEAIEMKDDIAHVSDSRCIGCGVCAYHCPADALALERTG 350

Query: 62  GLELWL 67
             E+++
Sbjct: 351 QREVFV 356


>gi|325970932|ref|YP_004247123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
 gi|324026170|gb|ADY12929.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
          Length = 55

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C   CP     EG +   I  D CIDCG C   CP  AI
Sbjct: 1  MAYKITDACVACG--TCQPECPTGAISEG-DIYVIDADACIDCGTCADVCPTAAI 52


>gi|294635459|ref|ZP_06713947.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291091192|gb|EFE23753.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 218

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + C  C    C++VCP    +  EN +  ++P +CI CG C   CP  A   D
Sbjct: 88  QACQHCDQAPCIDVCPTGASWRDENGIVRVNPADCIGCGYCVSACPYQARYLD 140


>gi|323476480|gb|ADX81718.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus HVE10/4]
          Length = 363

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W + N     +W
Sbjct: 326 DYRRPYEMWKE-NKAKYKEW 344


>gi|206889463|ref|YP_002248730.1| nitrate-inducible formate dehydrogenase, beta subunit
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741401|gb|ACI20458.1| nitrate-inducible formate dehydrogenase, beta subunit
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 243

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            V++ C+ C    CV++CPV    + +    +    ++CI C  C+  CP D  + D 
Sbjct: 69  FVSQRCMHCGEPACVQICPVGALMKDKETGIVYYDKNKCIACHACKSACPFDVPRYDD 126


>gi|121533839|ref|ZP_01665666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
 gi|121307830|gb|EAX48745.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
          Length = 55

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M Y +TE C+ C    C   CPV    EG     I  +EC++CG C   CPV AIK
Sbjct: 1  MAYKITEECVACG--SCAATCPVGAIKEGNPTYVIT-EECVECGACAAVCPVGAIK 53


>gi|153950968|ref|YP_001398811.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938414|gb|ABS43155.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 213

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 118


>gi|9651774|gb|AAF91266.1|AF230199_8 pyruvate oxidoreductase cysteine-rich subunit 1 [Methanococcus
          maripaludis]
          Length = 167

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C++VCPV      +  + +  + CI CG+C   CP  AI 
Sbjct: 44 CQHCTSSPCMDVCPVSAIESKDGVIYLDKESCIGCGLCAMACPFGAIY 91


>gi|323473828|gb|ADX84434.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus REY15A]
          Length = 363

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF E  +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIKCKL--CWIYCPDECFDETPDGYYDIAYDYCVGCGICADVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W + N     +W
Sbjct: 326 DYRRPYEMWKE-NKAKYKEW 344


>gi|332758139|gb|EGJ88464.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2747-71]
          Length = 205

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y +  +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLAISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|290967991|ref|ZP_06559540.1| ferredoxin [Megasphaera genomosp. type_1 str. 28L]
 gi|290781897|gb|EFD94476.1| ferredoxin [Megasphaera genomosp. type_1 str. 28L]
          Length = 54

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +V+++ C++C    C   CP     EGE+   I  D CIDCG CE  CP  AI  +
Sbjct: 2  HVISDECVMCG--SCAATCPTGAIEEGESKYVIT-DSCIDCGACESVCPTGAISAE 54


>gi|262383251|ref|ZP_06076387.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301309306|ref|ZP_07215248.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|262294149|gb|EEY82081.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300832395|gb|EFK63023.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 262

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+N  C  C++  CV+VCP       +  +   P+ CI C  C  ECP  A   DT 
Sbjct: 188 VTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNLCIKCCACVKECPEGARTFDTP 243


>gi|57238533|ref|YP_179664.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           RM1221]
 gi|57167337|gb|AAW36116.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           RM1221]
 gi|315058963|gb|ADT73292.1| Formate dehydrogenase-O, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 213

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 118


>gi|220932902|ref|YP_002509810.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
 gi|219994212|gb|ACL70815.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
          Length = 370

 Score = 60.6 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    CV+ CP +     +    I  + CI CG C   CP DAIK   E   +  
Sbjct: 194 EKCEKC--RKCVKFCPENAITINKETSTIDQNLCIGCGECVVTCPTDAIKIQWESTSQGV 251

Query: 67  LKINSEYATQWPNITTKKE 85
            +   E++  +  I  KK+
Sbjct: 252 QERIVEFS--YGIIKEKKD 268


>gi|325281874|ref|YP_004254416.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
 gi|324313683|gb|ADY34236.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
          Length = 471

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y VT  C  C+   CV  CP           +I  ++C+ CG+C+  CP  AI  
Sbjct: 112 YAVTNLCRGCEGRPCVMNCPKAAISFIGGKASISSEDCVSCGLCQKVCPYHAIVY 166



 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 15/65 (23%)

Query: 6   TENCILCKHT--------------DCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPEC 50
           +E+C+ C                  C +VCPV     + E    I  ++CI CG C   C
Sbjct: 146 SEDCVSCGLCQKVCPYHAIVYTPVPCEDVCPVKAISKDAEGVEHIDKEKCIYCGKCMQAC 205

Query: 51  PVDAI 55
           P  AI
Sbjct: 206 PYGAI 210


>gi|307729116|ref|YP_003906340.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1003]
 gi|307583651|gb|ADN57049.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1003]
          Length = 412

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPDT 59
          E CI C    C E CP+D     EN   +  D C  C  C P CP  AI       K D 
Sbjct: 18 EICIRCN--TCEETCPIDAITHDENNYVVKADVCNGCMACVPPCPTGAIDNWRTVLKADA 75

Query: 60 EPGLELWL 67
           P  E + 
Sbjct: 76 YPVEEQFT 83



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDEN 40


>gi|257790423|ref|YP_003181029.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474320|gb|ACV54640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           ++ ++ +C+ C+   C++VCP     +  + +  ++PD CI C  C   CP +  K ++
Sbjct: 84  SFFISTSCMHCEDPSCMKVCPAGAISKDAHGIVKVNPDVCIGCKYCFQACPYEVPKYNS 142


>gi|238761728|ref|ZP_04622703.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           kristensenii ATCC 33638]
 gi|238700242|gb|EEP92984.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           kristensenii ATCC 33638]
          Length = 204

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + D  
Sbjct: 59  AYYLSIACNHCSDPACTKVCPSGAMHKRDDGFVVVNEDICIGCRYCHMACPYGAPQYDEA 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|227831524|ref|YP_002833304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|229580472|ref|YP_002838872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284999076|ref|YP_003420844.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227457972|gb|ACP36659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228011188|gb|ACP46950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284446972|gb|ADB88474.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|323475826|gb|ADX86432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
 gi|323478601|gb|ADX83839.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 398

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|224371568|ref|YP_002605732.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694285|gb|ACN17568.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 375

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C + CP+D          +  D CI CG+C   CP  AI  + +P  
Sbjct: 276 CTGCG--ICKKRCPMDAISIKNKRAVLDLDRCIGCGLCVSTCPEKAIHLERKPEA 328



 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 36  HPDECIDCGVCEPECPVDAI 55
            P  C  CG+C+  CP+DAI
Sbjct: 272 DPGLCTGCGICKKRCPMDAI 291


>gi|139437063|ref|ZP_01771223.1| Hypothetical protein COLAER_00198 [Collinsella aerofaciens ATCC
           25986]
 gi|133776710|gb|EBA40530.1| Hypothetical protein COLAER_00198 [Collinsella aerofaciens ATCC
           25986]
          Length = 205

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C+   C EVCPV+      + + +   ECI C +C   CP  AI PD
Sbjct: 50  ACHHCEGAPCAEVCPVNAIEHDGDRIHVKEQECIGCRLCAIACPFGAIHPD 100


>gi|188495052|ref|ZP_03002322.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|188490251|gb|EDU65354.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
          Length = 205

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYSLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|315231407|ref|YP_004071843.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
 gi|315184435|gb|ADT84620.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
          Length = 616

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + C+ CK    +  CP   +    N + I P  C  CG+C   CP +AIK  +E G 
Sbjct: 555 VIEDKCVGCKACILLTGCPALVYDPETNKVRIDPLICTGCGICNQLCPFEAIKFPSEIGK 614

Query: 64  EL 65
           + 
Sbjct: 615 KE 616


>gi|296449690|ref|ZP_06891460.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877993|ref|ZP_06902012.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261414|gb|EFH08239.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431061|gb|EFH16889.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 509

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C E C             I+ + C  CG+C+  C  DAI     P
Sbjct: 118 FTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAISEVVRP 176



 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 1   MTYVVTENCILCK--------------HTDCVEVCPVDC-FYEGENF-LAIHPDECIDCG 44
           M Y+  E C  C                  C  VCP +   ++ EN    IH ++C++CG
Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEEKCLNCG 206

Query: 45  VCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKES 86
            C   CP  AI  K    P     ++    YA   P IT + E+
Sbjct: 207 ACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEA 250


>gi|218245586|ref|YP_002370957.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 8801]
 gi|257058632|ref|YP_003136520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 8802]
 gi|218166064|gb|ACK64801.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 8801]
 gi|256588798|gb|ACU99684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 8802]
          Length = 75

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV+ CPV C +EG        ++  I  + CIDCG+C   CPV
Sbjct: 1  MPHTIVTETCEGV--ADCVDACPVACIHEGPGKNSKGTDWYWIDFNTCIDCGICLNVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAIIPEERPDLQK 72


>gi|229580878|ref|YP_002839277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228011594|gb|ACP47355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 398

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C +  C++VCP +   + E  +  I  D+CI CG C   CP +A+K + E
Sbjct: 51  ACNHCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNE 104


>gi|150008416|ref|YP_001303159.1| putative ferredoxin iron-sulfur protein [Parabacteroides distasonis
           ATCC 8503]
 gi|255014151|ref|ZP_05286277.1| putative ferredoxin, putative iron-sulfur protein [Bacteroides sp.
           2_1_7]
 gi|149936840|gb|ABR43537.1| putative ferredoxin, putative iron-sulfur protein [Parabacteroides
           distasonis ATCC 8503]
          Length = 262

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+N  C  C++  CV+VCP       +  +   P+ CI C  C  ECP  A   DT 
Sbjct: 188 VTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNLCIKCCACVKECPEGARTFDTP 243


>gi|86149326|ref|ZP_01067557.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152455|ref|ZP_01070660.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88596633|ref|ZP_01099870.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613584|ref|YP_001001157.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|148925675|ref|ZP_01809363.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157415732|ref|YP_001482988.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|167006050|ref|ZP_02271808.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|205356647|ref|ZP_03223409.1| putative formate dehydrogenase iron sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|218563110|ref|YP_002344889.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|283956886|ref|ZP_06374359.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|85840108|gb|EAQ57366.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843340|gb|EAQ60550.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87249822|gb|EAQ72781.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88191474|gb|EAQ95446.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360816|emb|CAL35616.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|145845685|gb|EDK22776.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|157386696|gb|ABV53011.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|205345504|gb|EDZ32145.1| putative formate dehydrogenase iron sulfur subunit [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|283791612|gb|EFC30408.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|284926716|gb|ADC29068.1| putative formate dehydrogenase iron-sulfur subunit [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|307748373|gb|ADN91643.1| Formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315927458|gb|EFV06796.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930114|gb|EFV09241.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 213

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 118


>gi|73670092|ref|YP_306107.1| sulfite reductase subunit beta [Methanosarcina barkeri str. Fusaro]
 gi|72397254|gb|AAZ71527.1| sulfite reductase, beta subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 285

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  +V ENC+ CK   C + C V      E+  +I  ++CI CG C   C  DA+K +
Sbjct: 160 MPKIVEENCVGCKL--CEKACKVGAIKVLEDKASIDTEKCILCGACIAACRKDALKAE 215



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 18  VEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           V  CP  C    EN           I  + C+ C +CE  C V AIK
Sbjct: 138 VTGCPAACVRPQENDFGIMGTVMPKIVEENCVGCKLCEKACKVGAIK 184


>gi|260888766|ref|ZP_05900029.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|330839840|ref|YP_004414420.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
 gi|260861519|gb|EEX76019.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329747604|gb|AEC00961.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
          Length = 209

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + +TE+CI C    C  VCP  C  EGE    I    C+ CG+C   CPV+AI+      
Sbjct: 152 FRITEDCIGCG--TCAAVCPQQCIAEGEP-YKIAAAHCLHCGLCFESCPVEAIERLDSEA 208

Query: 63  L 63
            
Sbjct: 209 H 209


>gi|254509887|ref|ZP_05121954.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533598|gb|EEE36586.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 631

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+++CP        + +AI P  C  CG C   CP  AI  +  P
Sbjct: 261 NCLDICPTGAITPAGDHVAIDPMICAGCGECSALCPSTAITYEDPP 306



 Score = 46.3 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIK 56
           V   +C LC    CV +CP     +  +   ++   D C+ CG+C   CP  AI+
Sbjct: 478 VDAGSCTLCL--SCVSLCPSGALIDNPDKPQLNFQQDACLQCGICRTICPEQAIE 530


>gi|120597257|ref|YP_961831.1| glycyl-radical activating family protein [Shewanella sp. W3-18-1]
 gi|146291318|ref|YP_001181742.1| glycyl-radical activating family protein [Shewanella putrefaciens
           CN-32]
 gi|120557350|gb|ABM23277.1| glycyl-radical enzyme activating protein family [Shewanella sp.
           W3-18-1]
 gi|145563008|gb|ABP73943.1| glycyl-radical enzyme activating protein family [Shewanella
           putrefaciens CN-32]
          Length = 306

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           NCI C    CV  CPV         L I  + CI CG C   CP  A
Sbjct: 60  NCIHCG--RCVSACPVGAIDASRQGL-IDRNACIHCGACAEVCPAGA 103



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
                    CI CG C   CPV AI    +   +  +  N+
Sbjct: 52 PEIFYYD-RNCIHCGRCVSACPVGAI----DASRQGLIDRNA 88


>gi|257066615|ref|YP_003152871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Anaerococcus prevotii DSM 20548]
 gi|256798495|gb|ACV29150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaerococcus prevotii DSM 20548]
          Length = 57

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI  +
Sbjct: 1  MAYRIDENTCISCG--SCEGECPVGAISQGDAAYEIDADACIDCGSCAAVCPVEAIDQE 57


>gi|330448648|ref|ZP_08312296.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328492839|dbj|GAA06793.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 186

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C+   C  VCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 33 CRHCEDAPCAAVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 82


>gi|256841600|ref|ZP_05547107.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737443|gb|EEU50770.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 262

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+N  C  C++  CV+VCP       +  +   P+ CI C  C  ECP  A   DT 
Sbjct: 188 VTDNDLCTQCEY--CVDVCPTHAISLADEGMYSDPNLCIKCCACVKECPEGARTFDTP 243


>gi|197285065|ref|YP_002150937.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|194682552|emb|CAR42565.1| putative anaerobic dimethyl sulfoxide reductase chain B [Proteus
           mirabilis HI4320]
          Length = 209

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y +T +C  C    CV+ CP    +   G+  + +   +C+ CG C   CP  A + +T
Sbjct: 71  AYTLTISCNHCNDPICVKNCPTTAMHKRPGDGIVRVDTSKCVGCGYCSWSCPYGAPQMNT 130

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E G         +   +  N         +A K   +K    KY
Sbjct: 131 ETGQMSKCDFCVDLLAEGKNPICVDTCPLNAIKFGKIKDLRAKY 174


>gi|119992|sp|P00197|FER_CLOSM RecName: Full=Ferredoxin
 gi|65699|pir||FECLCE ferredoxin 2[4Fe-4S] - Clostridium sp
          Length = 55

 Score = 60.6 bits (146), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T+ CI C    C   CPV+   E +    I  D+CIDCG C   CPVDAI
Sbjct: 1  AYKITDGCINCG--ACEPECPVEAISESDAVRVIDADKCIDCGACANTCPVDAI 52


>gi|60683111|ref|YP_213255.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
 gi|60494545|emb|CAH09344.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
          Length = 489

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 114 YEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + EN +  I   +CI CG C   CP
Sbjct: 150 DACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|86151949|ref|ZP_01070162.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124937|ref|YP_004066941.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841057|gb|EAQ58306.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315018659|gb|ADT66752.1| formate dehydrogenase, iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 213

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 65  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 118


>gi|315187127|gb|EFU20884.1| hydrogenase large subunit domain protein [Spirochaeta thermophila
           DSM 6578]
          Length = 527

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VTE C  C    C   CP           +I  + CI+CG+CE  CP  AI
Sbjct: 158 FMVTEVCQGCVARPCKTGCPKGAISIVRGRASIDYERCINCGLCERVCPFHAI 210



 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C EVCPV    +GE+ +A I    CI CG C   CP
Sbjct: 193 ERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKACP 252

Query: 52  VDAIKPDTE 60
             A +  ++
Sbjct: 253 FGAPQEQSD 261


>gi|218782352|ref|YP_002433670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763736|gb|ACL06202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 287

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V+ +CI C    CVEVCP+     GE    I    CI CG+C   CP DA++   +  L+
Sbjct: 217 VSGDCIACG--KCVEVCPMHAIVLGEEKAEIQ-GRCIGCGLCASNCPTDAMELYQKAPLK 273

Query: 65  LWLK 68
             +K
Sbjct: 274 DDIK 277


>gi|126698470|ref|YP_001087367.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|260682591|ref|YP_003213876.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686191|ref|YP_003217324.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|260208754|emb|CBA61609.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212207|emb|CBE02898.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 509

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C E C             I+ + C  CG+C+  C  DAI     P
Sbjct: 118 FTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAISEVVRP 176



 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 1   MTYVVTENCILCK--------------HTDCVEVCPVDC-FYEGENF-LAIHPDECIDCG 44
           M Y+  E C  C                  C  VCP +   ++ EN    IH D+C++CG
Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 206

Query: 45  VCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKES 86
            C   CP  AI  K    P     ++    YA   P IT + E+
Sbjct: 207 ACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEA 250


>gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating family protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 306

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V + C+ C   +CVE CP      G + +  + D C  CGVC   CP  A
Sbjct: 55  TVPDKCVGCG--ECVEACPQGALSPGPDGMLRNQDACTACGVCAEVCPALA 103



 Score = 40.5 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 26/108 (24%)

Query: 21  CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           CP+ C               L + PD+C+ CG C   CP  A+ P  +  L      N +
Sbjct: 34  CPLSCLWCHNPEGIAAPPGMLTV-PDKCVGCGECVEACPQGALSPGPDGMLR-----NQD 87

Query: 73  YATQWPNITTKKESLPSAAKMDGVK----------QKYEKYFSPNPGG 110
             T          +L  A +  G K          +K   +F+ N GG
Sbjct: 88  ACTACGVCAEVCPAL--AHEAVGRKWTVLEVMAEIEKETPFFAGNQGG 133


>gi|254559063|ref|YP_003066158.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
 gi|254266341|emb|CAX22105.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           DM4]
          Length = 665

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 270 TRCLDVCPTGAISPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELWLK 68
           E W +
Sbjct: 565 EAWGE 569


>gi|317486663|ref|ZP_07945480.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922046|gb|EFV43315.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 377

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   CI C    CV +CP         E      I  + CI C  C   C   AI  DT
Sbjct: 195 VIYPKCIGCGQ--CVPLCPRSALSLEKAEKGRHAVIDKERCIGCYECVTACKQGAIGVDT 252

Query: 60  EPGLELWLKINSEYA 74
                 + +  +EYA
Sbjct: 253 PNEYSDFAERMAEYA 267


>gi|288802958|ref|ZP_06408394.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|302345157|ref|YP_003813510.1| ferredoxin [Prevotella melaninogenica ATCC 25845]
 gi|288334475|gb|EFC72914.1| conserved hypothetical protein [Prevotella melaninogenica D18]
 gi|302149382|gb|ADK95644.1| ferredoxin [Prevotella melaninogenica ATCC 25845]
          Length = 55

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV+   EG +   I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCIDECPVEAISEG-DIYKIDADACTECGTCASVCPSEAI 52


>gi|269925977|ref|YP_003322600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789637|gb|ACZ41778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 270

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVD 53
           ++ C  C    C+E CP       E   + I PD C  CG C P CP  
Sbjct: 88  SDVCKHCAVAGCLEACPTGAIIRTEFGTVYIQPDICNGCGYCVPACPFG 136


>gi|268591456|ref|ZP_06125677.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313110|gb|EFE53563.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 212

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    +  EG+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPMCVKNCPTTAMHKREGDGIVMVNTDKCVGCGTCAWSCPYGAPQMNP 130

Query: 60  EPGL 63
           E   
Sbjct: 131 ETKQ 134


>gi|218528461|ref|YP_002419277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
 gi|218520764|gb|ACK81349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium chloromethanicum CM4]
          Length = 665

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 270 TRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELWLK 68
           E W +
Sbjct: 565 EAWAE 569


>gi|118474652|ref|YP_892674.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261885445|ref|ZP_06009484.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|118413878|gb|ABK82298.1| formate dehydrogenase iron-sulfur subunit [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 184

 Score = 60.2 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T  C  C    C +VCPV CFY   + + +H  ++CI CG C   CP  A +   +    
Sbjct: 53  TIACQHCTDAPCAQVCPVSCFYIRADGIVLHDKNKCIGCGYCLYACPFGAPQFPRDGAFG 112

Query: 65  LWLKIN 70
           +  +++
Sbjct: 113 IKGEMD 118


>gi|325833428|ref|ZP_08165877.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
 gi|325485352|gb|EGC87821.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
          Length = 341

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           V   C+ C+   CV+ CP       ++ +  I  ++CI CG+C   CP  A
Sbjct: 179 VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGA 229


>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
 gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
          Length = 596

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           Y +++ C  C    C   CPV            I  ++CI CG C   CP  AI
Sbjct: 542 YEISDVCRGCGL--CARQCPVQAISGSPKTKHVIDQNKCIKCGACMTACPFKAI 593


>gi|240137055|ref|YP_002961524.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           AM1]
 gi|240007021|gb|ACS38247.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacterium extorquens
           AM1]
          Length = 665

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 270 TRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 507 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 564

Query: 64  ELWLK 68
           E W +
Sbjct: 565 EAWGE 569


>gi|170289699|ref|YP_001736515.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173779|gb|ACB06832.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 649

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + C  C+       CP   F +  + + I P  C  CG C   CP DAI+P
Sbjct: 584 VNKDKCTYCRVCINTFACP--AFVDTGSSVEIDPAICFGCGACVQVCPYDAIEP 635


>gi|90407583|ref|ZP_01215764.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Psychromonas sp. CNPT3]
 gi|90311286|gb|EAS39390.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Psychromonas sp. CNPT3]
          Length = 205

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV+        + I+   CI C +C   CP  AI
Sbjct: 51 CRHCEDAPCATVCPVNAITHVNGSIHINESLCIGCTLCSIACPFGAI 97


>gi|251790292|ref|YP_003005013.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Dickeya zeae Ech1591]
 gi|247538913|gb|ACT07534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
          zeae Ech1591]
          Length = 208

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C +VCPV+     +N + +  + CI C +C   CP  AI P
Sbjct: 51 CRHCEDAPCAKVCPVNTIRHQDNAVLLDENTCIGCKLCAIACPFGAITP 99


>gi|302875371|ref|YP_003844004.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|307688950|ref|ZP_07631396.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|302578228|gb|ADL52240.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
          Length = 417

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C+ C    C + CP+      +   A+  + C+ CGVC   CP  +I
Sbjct: 287 VIKDGCVGCG--KCAKACPIGAITMKDKKAAVDEEICLGCGVCVRNCPKKSI 336



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  D C+ CG C   CP+ AI    +   
Sbjct: 287 VIKDGCVGCGKCAKACPIGAITMKDKKAA 315


>gi|193084277|gb|ACF09936.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-130-D10]
          Length = 483

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+ + C  +CP    +  E+ +     + CI C  C   CP DA+  D   G
Sbjct: 71  CNHCEDSPCTTICPTTALFTREDGIVDFDDERCIGCKSCMQACPYDALYIDPNKG 125



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 23/71 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCG---------VCEPECPV 52
           E CI CK   C++ CP D        L I P++     C  C           C   CP 
Sbjct: 101 ERCIGCK--SCMQACPYDA-------LYIDPNKGTAAKCNYCAHRIEHSYEPSCVIVCPT 151

Query: 53  DAIKPDTEPGL 63
           +AI        
Sbjct: 152 EAIISGDLDDH 162


>gi|303229419|ref|ZP_07316209.1| ferredoxin [Veillonella atypica ACS-134-V-Col7a]
 gi|303231397|ref|ZP_07318131.1| ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302513993|gb|EFL56001.1| ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302515955|gb|EFL57907.1| ferredoxin [Veillonella atypica ACS-134-V-Col7a]
          Length = 54

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV    EGE    I+ D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKCG--SCASVCPVAAISEGETKYEIN-DTCIDCGSCESVCPVSVISAE 54


>gi|53715176|ref|YP_101168.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|253566311|ref|ZP_04843765.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265767004|ref|ZP_06094833.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218041|dbj|BAD50634.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|251945415|gb|EES85853.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253381|gb|EEZ24857.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 489

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 114 YEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167



 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + EN +  I   +CI CG C   CP
Sbjct: 150 DACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|332289260|ref|YP_004420112.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432156|gb|AEC17215.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 205

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C++  C +VCP    ++ E+   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYLSISCNHCENPACTKVCPTGAMHKNEDGFVIVNEEVCIGCRYCHMACPYDAPQYDAK 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|301164623|emb|CBW24182.1| putative iron hydrogenase [Bacteroides fragilis 638R]
          Length = 489

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C   CP D     +N  A I  D CI CG C   CP  AI
Sbjct: 114 YEVTNLCRGCVARSCYMNCPKDAIRFRKNGQAKIDHDACISCGKCHQSCPYHAI 167



 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + EN +  I   +CI CG C   CP
Sbjct: 150 DACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|325968156|ref|YP_004244348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707359|gb|ADY00846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 1137

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C++ CP             H P  C  CG C  ECP DAI  +      +  
Sbjct: 929 CTKCGL--CIKACPYGAIRGVPGKWIEHIPAACQGCGSCVAECPQDAITLEALSDDAIMA 986

Query: 68  KINSEYATQ 76
           +I++  A +
Sbjct: 987 QIDAALAEE 995



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 39  ECIDCGVCEPECPVDAIK 56
           +C  CG+C   CP  AI+
Sbjct: 928 KCTKCGLCIKACPYGAIR 945


>gi|251791771|ref|YP_003006492.1| putative oxidoreductase Fe-S binding subunit [Dickeya zeae Ech1591]
 gi|247540392|gb|ACT09013.1| glutamate synthase, small subunit [Dickeya zeae Ech1591]
          Length = 667

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+ + C  VCP       ++ + +  ++CI C  C   CP  AI  + + 
Sbjct: 56  CRHCEDSPCANVCPTQALVRKQDGIQLVAEKCIGCKTCVLACPFGAITVENQA 108


>gi|218782988|ref|YP_002434306.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764372|gb|ACL06838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 378

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           M  V TE C+ C    C E C      +GE+   +++ D CI CGVC   CP +AI
Sbjct: 308 MAVVDTEKCVSCG--TCAEKCGTQAMTQGEDGSPSLNKDLCIGCGVCAHFCPENAI 361


>gi|146303090|ref|YP_001190406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701340|gb|ABP94482.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 404

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C  C +  C++ CP     + E  +  I  ++CI CG C+  CP +A+    +  +   
Sbjct: 58  SCNHCDNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEALHFSKDGTMGKC 117

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
                      P       +                Y +P
Sbjct: 118 HLCVDRLGKGMPYCVESCPTGALTFGWLDRPDGEVNYLAP 157


>gi|325270555|ref|ZP_08137155.1| ferredoxin [Prevotella multiformis DSM 16608]
 gi|324987131|gb|EGC19114.1| ferredoxin [Prevotella multiformis DSM 16608]
          Length = 55

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV    EG +   I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCIDECPVGAISEG-DIYKIDADACTECGTCASVCPNEAI 52


>gi|255322780|ref|ZP_05363922.1| electron transport protein HydN [Campylobacter showae RM3277]
 gi|255300122|gb|EET79397.1| electron transport protein HydN [Campylobacter showae RM3277]
          Length = 248

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFDDNCIELHEEICIGCKLCTIACPYGAISSSAE 104


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCPV+    E +    I  D C+ CG C   C   AI   T
Sbjct: 541 SYVINPEKCVGC--TACARVCPVNAINGEVKKVHEIDQDACVKCGSCIEVCRFGAISKVT 598

Query: 60  EPGL 63
               
Sbjct: 599 PAVQ 602



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I+P++C+ C  C   CPV+AI  + +   E
Sbjct: 542 YVINPEKCVGCTACARVCPVNAINGEVKKVHE 573


>gi|1353257|gb|AAB06234.1| dimethyl sulphoxide reductase subunit B [Haemophilus influenzae]
          Length = 205

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D + 
Sbjct: 61  YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQK 120

Query: 62  GL 63
           G 
Sbjct: 121 GH 122


>gi|299141262|ref|ZP_07034399.1| hypothetical protein HMPREF0665_00832 [Prevotella oris C735]
 gi|298577222|gb|EFI49091.1| hypothetical protein HMPREF0665_00832 [Prevotella oris C735]
          Length = 56

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CP     EG +  +I+P+ C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCIDECPAGAISEG-DIYSINPEACTECGTCADVCPNEAI 52


>gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           Y +T+NC  C    C   CPV      +  +  I P+ CI CG CE  C  DA+K
Sbjct: 530 YEITDNCKGCG--ACARKCPVGAISGEKKKVHSIDPNVCIKCGKCEESCKFDAVK 582



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
           D C  CG C  +CPV AI  + +    +            PN+  K      + K D VK
Sbjct: 534 DNCKGCGACARKCPVGAISGEKKKVHSID-----------PNVCIKCGKCEESCKFDAVK 582


>gi|172039435|ref|YP_001805936.1| ferredoxin [Cyanothece sp. ATCC 51142]
 gi|171700889|gb|ACB53870.1| ferredoxin [Cyanothece sp. ATCC 51142]
          Length = 75

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV+ CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTETCEGV--ADCVDACPVACIHEGPGKNVKGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAIVPEERPDLQK 72


>gi|210620710|ref|ZP_03292196.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275]
 gi|210155211|gb|EEA86217.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275]
          Length = 501

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C E C             I  D+C  CG C+  C  DAI     P
Sbjct: 107 FTVTDLCRGCLAHRCKESCKFGAISYINGRAYIDQDKCKSCGACKKACQYDAISEMIRP 165



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 16/72 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDC--FYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP       +  +   IH ++C++CG 
Sbjct: 137 AYIDQDKCKSCGACKKACQYDAISEMIRPCKSVCPTGALDINKDTSKAIIHEEKCVNCGA 196

Query: 46  CEPECPVDAIKP 57
           C   CP  AI  
Sbjct: 197 CMSACPFGAISD 208


>gi|124485356|ref|YP_001029972.1| hypothetical protein Mlab_0531 [Methanocorpusculum labreanum Z]
 gi|124362897|gb|ABN06705.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 367

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI+C    C+  CP  C       ++I  D CI C +C   CP  AI  D +    ++
Sbjct: 192 DKCIVCG--ACMNACPEFCISIAGKAVSIDLDHCIGCLMCMNTCPEHAIDLDWKDDGVVF 249

Query: 67  LKINSEYAT 75
           ++   EYA 
Sbjct: 250 VERMIEYAA 258



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D+CI CG C   CP   I
Sbjct: 189 ILEDKCIVCGACMNACPEFCI 209


>gi|24112977|ref|NP_707487.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|110805564|ref|YP_689084.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|24051935|gb|AAN43194.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|110615112|gb|ABF03779.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
          Length = 205

 Score = 60.2 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|331001648|ref|ZP_08325171.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413369|gb|EGG92736.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 507

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C EVCP       +   F +I+ ++CI CG C   C  +AI   T P
Sbjct: 117 VTDGCQGCLAHPCSEVCPTGAVKIDKESGFSSINQEKCIKCGRCANVCAYNAIIVQTRP 175



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C   C +D     EN  A I  D+C+ CG C   CP
Sbjct: 152 EKCIKCGRCANVCAYNAIIVQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVNCP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAISD 217


>gi|254478137|ref|ZP_05091520.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|214035999|gb|EEB76690.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 203

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          VV + C  C    C+  CPV           I    CI CG C   C    IKP     +
Sbjct: 21 VVGKGCTAC--QMCIRNCPVGAISLVNGSAYIDHSICIGCGECVSMCQYGVIKPQWGTDM 78

Query: 64 ELWLKINSEYA 74
          + +++  +EYA
Sbjct: 79 DAFIERMTEYA 89


>gi|169334477|ref|ZP_02861670.1| hypothetical protein ANASTE_00880 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259194|gb|EDS73160.1| hypothetical protein ANASTE_00880 [Anaerofustis stercorihominis DSM
           17244]
          Length = 207

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++C LC    C++VC  +   E E    I  D C++CG C   CP  A+
Sbjct: 154 YEITDDCFLCG--KCIKVCSFNAIEEAEEKYKITEDNCLECGNCYSVCPAGAV 204


>gi|89074812|ref|ZP_01161266.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
 gi|89049387|gb|EAR54949.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
          Length = 204

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C EVCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCAEVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 100



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 32 FLAIHPDECIDCGVCEPEC 50
          F+   PD+CI CG C   C
Sbjct: 4  FVVADPDKCIGCGTCMAAC 22


>gi|332298933|ref|YP_004440855.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
 gi|332182036|gb|AEE17724.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
          Length = 491

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT  C  C    C+  C        E    I P++C++CG+C   CP  AI
Sbjct: 112 YMVTNACQACLARPCMMNCAKKAIAITEGRARIDPEKCVNCGLCMQNCPYHAI 164



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 15/63 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           E C+ C                  C E CPV    + E     I   +CI CG C  ECP
Sbjct: 147 EKCVNCGLCMQNCPYHAIIKIPVPCEEACPVGAISKDETGKERIDYHKCIFCGNCMRECP 206

Query: 52  VDA 54
             A
Sbjct: 207 FGA 209


>gi|283795361|ref|ZP_06344514.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291077019|gb|EFE14383.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091066|emb|CBK77173.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 262

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDT 59
           Y +T+ CI C    C +VCP  CF+         P  CI C  C   CP+ AI    P+ 
Sbjct: 174 YQITDECIGCG--ICQKVCPKGCFHLEGQKSIWEPAGCISCMACIHACPMAAIHLTMPEK 231

Query: 60  EPGLE 64
            P   
Sbjct: 232 NPKAR 236


>gi|193084380|gb|ACF10036.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote AD1000-18-D2]
          Length = 483

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+ + C  +CP    +  E+ +     + CI C  C   CP DA+  D   G
Sbjct: 71  CNHCEDSPCTTICPTTALFTREDGIVDFDDERCIGCKSCMQACPYDALYIDPNKG 125



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 23/70 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCG---------VCEPECPV 52
           E CI CK   C++ CP D        L I P++     C  C           C   CP 
Sbjct: 101 ERCIGCK--SCMQACPYDA-------LYIDPNKGTAAKCNYCAHRIEHSYEPSCVIVCPT 151

Query: 53  DAIKPDTEPG 62
           +AI       
Sbjct: 152 EAIVSGDLDD 161


>gi|126460205|ref|YP_001056483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249926|gb|ABO09017.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 215

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C++  CV+ CP    Y+ E+ L  ++ D CI CG C   CP  A
Sbjct: 82  FVPKQCNHCENAPCVKPCPTGATYKTEDGLVLVNDDLCIGCGACIQACPYGA 133


>gi|90578228|ref|ZP_01234039.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
 gi|90441314|gb|EAS66494.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
          Length = 204

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPV    +  + + ++   C+ C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCAAVCPVQAISKQADRVVLNESLCVGCTLCAVACPFGAIAFD 100



 Score = 34.0 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 32 FLAIHPDECIDCGVCEPEC 50
          F+   PD+CI CG C   C
Sbjct: 4  FVVPDPDKCIGCGTCMAAC 22


>gi|254974515|ref|ZP_05270987.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255091906|ref|ZP_05321384.1| iron-dependent hydrogenase [Clostridium difficile CIP 107932]
 gi|255100005|ref|ZP_05328982.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305892|ref|ZP_05350064.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|255313640|ref|ZP_05355223.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516324|ref|ZP_05384000.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649423|ref|ZP_05396325.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|306519504|ref|ZP_07405851.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|328887576|emb|CAJ67726.2| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 496

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VT+ C  C    C E C             I+ + C  CG+C+  C  DAI     P
Sbjct: 105 FTVTDICRGCLAHRCKEACKFGAITHVGGMAYINHELCKACGMCKKACQYDAISEVVRP 163



 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 18/104 (17%)

Query: 1   MTYVVTENCILCK--------------HTDCVEVCPVDC-FYEGENF-LAIHPDECIDCG 44
           M Y+  E C  C                  C  VCP +   ++ EN    IH D+C++CG
Sbjct: 134 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 193

Query: 45  VCEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKES 86
            C   CP  AI  K    P     ++    YA   P IT + E+
Sbjct: 194 ACMSACPFGAISDKSLIAPVARKLVQKEKMYAVVAPAITGQVEA 237


>gi|260430223|ref|ZP_05784197.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
 gi|260418695|gb|EEX11951.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
          Length = 461

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T C+++CP        + + I P  C  CG C   CP  A+  D  P
Sbjct: 92  TRCLDLCPTGAILPDGDHVTIDPMICAGCGACSAACPSGAVSYDAPP 138



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T  C LC    CV +CP     +  +   L    D C+ CG+C   CP DAI  D
Sbjct: 309 VDTGACTLCL--SCVSLCPSGALGDNPDLPQLRFQEDACLQCGICATVCPEDAITLD 363



 Score = 33.6 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 14/50 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDE---CIDCG 44
           + C+ C    C  VCP D       F           ++ +E   CI+CG
Sbjct: 343 DACLQCG--ICATVCPEDAITLDPRFNLNESALSQEVLNEEEPFACIECG 390


>gi|59711966|ref|YP_204742.1| formate dehydrogenase N, beta subunit [Vibrio fischeri ES114]
 gi|197334851|ref|YP_002156159.1| formate dehydrogenase iron-sulfur subunit [Vibrio fischeri MJ11]
 gi|59480067|gb|AAW85854.1| formate dehydrogenase N, beta subunit [Vibrio fischeri ES114]
 gi|197316341|gb|ACH65788.1| formate dehydrogenase iron-sulfur subunit [Vibrio fischeri MJ11]
          Length = 202

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++  C+ C    C  VCP DCF   E+ +  H  D CI CG C   CP  A +   +   
Sbjct: 53  ISVACMHCTDAPCKAVCPADCFEHTEDGIVRHNKDLCIGCGYCLFACPFGAPQFPKQGAF 112

Query: 64  ELWLKIN 70
               K++
Sbjct: 113 AERGKMD 119


>gi|308271987|emb|CBX28595.1| hypothetical protein N47_G39190 [uncultured Desulfobacterium sp.]
          Length = 1029

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2    TYVVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
              V ++ C  C    CV VCP    F   + +  I P +C  CGVC  ECP  AI+
Sbjct: 954  ARVDSKKCAACL--ICVRVCPFGVPFINADGYSEIDPSKCHGCGVCASECPAKAIQ 1007


>gi|165977109|ref|YP_001652702.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307246598|ref|ZP_07528669.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|165877210|gb|ABY70258.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306852470|gb|EFM84704.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 205

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +   I + + CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPACVKVCPTGAMHKNADGFVIVNEETCIGCRYCSMACPYDAPQY 116


>gi|89897072|ref|YP_520559.1| hypothetical protein DSY4326 [Desulfitobacterium hafniense Y51]
 gi|89336520|dbj|BAE86115.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 460

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C   CP        N   I    C++CG+C   CP  AI
Sbjct: 93  YSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAI 145



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++    C+ C                  C + CP       E+ + +I    C  CG C
Sbjct: 123 AFIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKC 182

Query: 47  EPECPVDAI 55
              CP  A+
Sbjct: 183 IISCPFGAV 191


>gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 436

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           Y +T++C  C  T C+ VC VD          I   D+CI CG C   C  DAI
Sbjct: 382 YYITDDCKGC--TKCMNVCAVDAINGQVRSRHIIDADKCIRCGACRKICSFDAI 433


>gi|87302718|ref|ZP_01085529.1| ferredoxin [Synechococcus sp. WH 5701]
 gi|87282601|gb|EAQ74559.1| ferredoxin [Synechococcus sp. WH 5701]
          Length = 74

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C + G+        F  I+ D CIDCG+C   CPV
Sbjct: 1  MAHSIVTDICEGV--ADCVDACPVACIHPGQGANSKGTSFYWINFDTCIDCGICLQVCPV 58

Query: 53 -DAIKPDTEPGLE 64
            AI P+    L+
Sbjct: 59 SGAILPEERADLQ 71


>gi|328952489|ref|YP_004369823.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452813|gb|AEB08642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 352

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  ++C  C    C +  CP+D   EGE    +  + CI CGVC   CP +AI
Sbjct: 273 AHIDPDSCQACGV--CRDERCPMDAIEEGEGVYQVIDNRCIGCGVCVITCPGEAI 325


>gi|229588699|ref|YP_002870818.1| putative electron transpor-like protein [Pseudomonas fluorescens
           SBW25]
 gi|229360565|emb|CAY47422.1| putative electron transpor-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 387

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            Y+    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+
Sbjct: 74  AYIREAECIGC--TKCIQACPVDAIVGAAKLMHTVII-DECTGCDLCVAPCPVDCIE 127



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 103 MHTVIIDECTGCDL--CVAPCPVDCIEM 128


>gi|224370172|ref|YP_002604336.1| HdrL3 [Desulfobacterium autotrophicum HRM2]
 gi|223692889|gb|ACN16172.1| HdrL3 [Desulfobacterium autotrophicum HRM2]
          Length = 1487

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 4    VVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V  ENC  C    CV  CP +      E    I P  C  CGVC  ECP   IK +    
Sbjct: 1415 VDPENCAACL--ICVRSCPYNVPVINAEGVSYIDPALCQGCGVCAAECPAKTIKLNWYED 1472

Query: 63   LELWLKINS 71
             +L  K+ +
Sbjct: 1473 QQLLSKVEA 1481



 Score = 33.6 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVD 53
           EN   +  ++C  CG C   CPVD
Sbjct: 105 ENPRYVDLEKCTSCGDCAKVCPVD 128


>gi|302343816|ref|YP_003808345.1| electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
          baarsii DSM 2075]
 gi|301640429|gb|ADK85751.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
          baarsii DSM 2075]
          Length = 405

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  ++ +N C  C    CV+ CP     E  + +A+  D C  CG C   CP  AI  D 
Sbjct: 1  MALIIDKNLCTGCG--SCVDACPFGAM-ELHDGVAVAGDGCTLCGACVDACPESAIGLDE 57

Query: 60 EPGLE 64
            G +
Sbjct: 58 PAGEQ 62


>gi|163849831|ref|YP_001637874.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163661436|gb|ABY28803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium extorquens PA1]
          Length = 679

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 284 TRCLDVCPTGAIAPAGDTVAIDPYVCAGCGSCAAVCPTGAANYALPPADALMRRL 338



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I    +   
Sbjct: 521 TEDCTLCL--SCVGACPTHALSDSTDRPLLAFEESLCVQCGLCAATCPEDVISLKPQIDF 578

Query: 64  ELWLK 68
           E W +
Sbjct: 579 EAWGE 583


>gi|261379385|ref|ZP_05983958.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
 gi|284797832|gb|EFC53179.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
          Length = 283

 Score = 60.2 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 81  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVAPCPVDCI--DMVPVSQPFL 136

Query: 68  KINSEYAT 75
                ++T
Sbjct: 137 PSARRFST 144



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 76 IDEAVCIGCTACIRACPVDAI 96



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CV  CPVDC 
Sbjct: 103 MHTVISDECTGCGL--CVAPCPVDCI 126


>gi|332088844|gb|EGI93956.1| dimethylsulfoxide reductase, chain B [Shigella boydii 5216-82]
          Length = 205

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|269105012|ref|ZP_06157708.1| hydrogenase 4 Fe-S subunit [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161652|gb|EEZ40149.1| hydrogenase 4 Fe-S subunit [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 216

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPV    + ++ + ++   C+ C +C   CP  AI  D
Sbjct: 65  CRHCEDAPCAAVCPVQAITKQDDRVLLNETLCVGCTLCAVACPFGAIAFD 114


>gi|170768738|ref|ZP_02903191.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|170122286|gb|EDS91217.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
          Length = 205

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|167752846|ref|ZP_02424973.1| hypothetical protein ALIPUT_01107 [Alistipes putredinis DSM
          17216]
 gi|167659915|gb|EDS04045.1| hypothetical protein ALIPUT_01107 [Alistipes putredinis DSM
          17216]
          Length = 56

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++ + C+ C    C++ CPV+    G +   I PD+CIDCG C   CP +AIKP+
Sbjct: 1  MAYKISPDLCVACG--TCIDECPVEAISAG-DVYVIDPDKCIDCGTCAGVCPSEAIKPE 56


>gi|149194135|ref|ZP_01871233.1| HYDROGENASE-3 SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
 gi|149136088|gb|EDM24566.1| HYDROGENASE-3 SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
          Length = 187

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  V+   C  C    C  VCPV     GE+ + ++ + CI C +C   CP  AI+P  E
Sbjct: 48  MYGVMPNQCRQCDDAPCANVCPVGALRFGEDEIELYEEICIGCKLCSIACPFGAIRPAAE 107

Query: 61  P 61
            
Sbjct: 108 A 108


>gi|257372947|ref|YP_003175721.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257167671|gb|ACV49363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 257

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           M+Y  T  C  C++  CV+VCPV+  Y+ E+ +  I  D+CI C  C   CP +A   + 
Sbjct: 64  MSYQPT-ACQHCENAPCVKVCPVNATYKREDGIVEIDYDKCIGCRYCMAACPYNARVFNW 122

Query: 60  EPGL 63
           +   
Sbjct: 123 DEPQ 126


>gi|227355469|ref|ZP_03839865.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|227164456|gb|EEI49340.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 209

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y +T +C  C    CV+ CP    +   G+  + +   +C+ CG C   CP  A + +T
Sbjct: 71  AYTLTISCNHCDDPICVKNCPTTAMHKRPGDGIVRVDTSKCVGCGYCSWSCPYGAPQMNT 130

Query: 60  EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           E G         +   +  N         +A K   +K    KY
Sbjct: 131 ETGQMSKCDFCVDLLAEGKNPICVDTCPLNAIKFGKIKDLRAKY 174


>gi|283787036|ref|YP_003366901.1| anaerobic reductase component [Citrobacter rodentium ICC168]
 gi|282950490|emb|CBG90155.1| putative anaerobic reductase component [Citrobacter rodentium
           ICC168]
          Length = 209

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + ++ D+C+ CG C   CP  A + DT
Sbjct: 71  AYTMSISCNHCADPICTKNCPTTAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMDT 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QAGQ 134


>gi|332295972|ref|YP_004437895.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179075|gb|AEE14764.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 259

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C    CV+VCP    ++ EN +     ++CI CG C   CP  
Sbjct: 73  CFHCGDPACVKVCPSGALFQAENGIVAFDENKCIACGYCHSACPFG 118


>gi|260655399|ref|ZP_05860887.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
 gi|260629847|gb|EEX48041.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
          Length = 387

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPD- 58
           V  E CI C    C   CPV         G N   I   +CI C  C   CPV AI  D 
Sbjct: 211 VAPEECIACG--RCARNCPVRAISMKNPAGANKAFIDQSKCIGCSECMTHCPVSAISIDW 268

Query: 59  -TEPGLELWLKINSEYA 74
            +E     + +  +EYA
Sbjct: 269 GSEEDRSAFGERMAEYA 285



 Score = 41.7 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           L++ P+ECI CG C   CPV AI      G 
Sbjct: 209 LSVAPEECIACGRCARNCPVRAISMKNPAGA 239


>gi|74317757|ref|YP_315497.1| putative tetrathionate reductase subunit B [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057252|gb|AAZ97692.1| putative tetrathionate reductase subunit B [Thiobacillus
           denitrificans ATCC 25259]
          Length = 245

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           TY++   C  C++  CV VCPV   F   +  + +  D C+ C  C   CP DA  I  +
Sbjct: 89  TYMLPRLCNHCENPPCVPVCPVGATFKRDDGIVVVDGDRCVGCAYCVQACPYDARFINHE 148

Query: 59  TEPGLE 64
           T    +
Sbjct: 149 TNKADK 154


>gi|309379085|emb|CBX22216.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 279

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D       F+  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRSCPADAIMGAGKFMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRSCPADAI 94



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 599

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+    C+ C  T C  VCPV+    E      I  D CI CG C   C   AI
Sbjct: 542 YVIDSAKCVGC--TACARVCPVNAISGEIRKTHVIDNDICIRCGSCIEVCRFGAI 594



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
             I   +C+ C  C   CPV+AI  +
Sbjct: 542 YVIDSAKCVGCTACARVCPVNAISGE 567


>gi|126460106|ref|YP_001056384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249827|gb|ABO08918.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 187

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV VCP    Y   + L  I+P  CI C  C   CP +A   D E GL
Sbjct: 62  CQHCENAPCVTVCPTGASYRDVDGLVKINPALCIGCKYCMVACPYEARWLDEETGL 117


>gi|15789981|ref|NP_279805.1| HmoA [Halobacterium sp. NRC-1]
 gi|169235702|ref|YP_001688902.1| dimethylsulfoxide reductase subunit B (electron transfer protein)
           [Halobacterium salinarum R1]
 gi|10580399|gb|AAG19285.1| molybdopterin oxidoreductase [Halobacterium sp. NRC-1]
 gi|167726768|emb|CAP13554.1| dimethylsulfoxide reductase subunit B (electron transfer protein)
           [Halobacterium salinarum R1]
          Length = 262

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           MTY  T  C  C++  CV+VCPV+  Y  ++ +  I  D+C+ C  C   CP +A
Sbjct: 64  MTYQPT-ACQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCMGCRYCMAACPYNA 117


>gi|255525440|ref|ZP_05392378.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296187867|ref|ZP_06856261.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510907|gb|EET87209.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296047824|gb|EFG87264.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 268

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP---- 61
          E CI C    CV  CP+     GEN    I+ D C+ CG C   CP +AI     P    
Sbjct: 9  EKCIKCG--ACVMECPISILRMGENGPEEIYEDRCMSCGHCVAVCPKEAIDNKKSPLSMQ 66

Query: 62 -GLELWLKINSEYATQW 77
             +   ++N+E A  +
Sbjct: 67 VNAKNLTRLNAEEAENF 83



 Score = 37.8 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          ++ ++CI CG C  ECP+  ++       E++
Sbjct: 6  LNKEKCIKCGACVMECPISILRMGENGPEEIY 37


>gi|212710427|ref|ZP_03318555.1| hypothetical protein PROVALCAL_01489 [Providencia alcalifaciens
          DSM 30120]
 gi|212686847|gb|EEB46375.1| hypothetical protein PROVALCAL_01489 [Providencia alcalifaciens
          DSM 30120]
          Length = 187

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP------DTEPG 62
          C  C    C  VCPV+        + ++   CI C +C   CP  AI P      DT   
Sbjct: 33 CRQCDDAPCARVCPVNAITHENGMIVLNESLCIGCKLCGLVCPFGAITPSGSKPVDTPDF 92

Query: 63 LELWL 67
           E ++
Sbjct: 93 FEQYV 97


>gi|332160309|ref|YP_004296886.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664539|gb|ADZ41183.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859581|emb|CBX69922.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica W22703]
          Length = 204

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ +  D CI C  C   CP  A + D  
Sbjct: 59  AYYLSIACNHCSDPACTKVCPTGAMHKRDDGFVVVSEDICIGCRYCHMACPYGAPQYDEA 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|331656967|ref|ZP_08357929.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
 gi|331055215|gb|EGI27224.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA206]
          Length = 205

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TY ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  TYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|15803004|ref|NP_289034.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933]
 gi|291283701|ref|YP_003500519.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. CB9615]
 gi|12516866|gb|AAG57591.1|AE005478_1 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
 gi|13362813|dbj|BAB36766.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|209763668|gb|ACI80146.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763670|gb|ACI80147.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763672|gb|ACI80148.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763674|gb|ACI80149.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763676|gb|ACI80150.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|290763574|gb|ADD57535.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. CB9615]
          Length = 218

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV+VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCVQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|302348244|ref|YP_003815882.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
 gi|302328656|gb|ADL18851.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
          Length = 601

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 4  VV-TENCI--LCKHTDCVEVCPV-----DCFYEGENFL----AIHPDECIDCGVCEPECP 51
          V+ ++ C    C +  C+ VCP+     D   E +        IH D CI CG+C   CP
Sbjct: 6  VIDSDECKPKRCSYQ-CISVCPINKSKKDVAIEADTKARAKPVIHEDVCIGCGLCVKACP 64

Query: 52 VDAI 55
           DAI
Sbjct: 65 FDAI 68


>gi|148270023|ref|YP_001244483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga petrophila RKU-1]
 gi|147735567|gb|ABQ46907.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           petrophila RKU-1]
          Length = 357

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVV E C+ C    C + CPV           I  ++CI CG C   C   A+ P  + 
Sbjct: 188 PYVVEEKCVACG--TCAKFCPVGAITVT-KVAKIDYEKCIGCGQCIAMCSYGAMSPKWDS 244

Query: 62  GLELWLKINSEYAT 75
             +   K  +EYA 
Sbjct: 245 STDSLSKKMAEYAK 258



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E+   +  ++C+ CG C   CPV AI
Sbjct: 185 ESKPYVVEEKCVACGTCAKFCPVGAI 210


>gi|325968088|ref|YP_004244280.1| Fe-S-cluster-containing hydrogenase components 1 [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707291|gb|ADY00778.1| Fe-S-cluster-containing hydrogenase components 1 [Vulcanisaeta
           moutnovskia 768-28]
          Length = 263

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  CK+  CV VCP    Y    +  + I+ + CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFQCKNPACVTVCPTGAIYKRREDGVVVINYEVCIGCRYCENACPYGNIIFDP 129

Query: 60  EPGLELW--LKINSEYATQWP 78
             G+     + I+  Y    P
Sbjct: 130 VEGVSKKCVMAIDRVYDESLP 150


>gi|227499762|ref|ZP_03929862.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
 gi|227218148|gb|EEI83414.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
          Length = 57

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI  +
Sbjct: 1  MAYRIDENTCISCG--SCEGECPVGAIAQGDAAYEIDADACIDCGSCAAVCPVEAIDQE 57


>gi|261378107|ref|ZP_05982680.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
 gi|269145561|gb|EEZ71979.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
          Length = 279

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C+  CP D       F+  +  DEC  CG+C   CPVD I 
Sbjct: 71  LAWIDESACIGC--TACIRACPTDAIMGASKFMHTVIADECTGCGLCIAPCPVDCIH 125


>gi|307267356|ref|ZP_07548851.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917614|gb|EFN47893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 154

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C   +CV VCP D     +    I P++C DCG C   CPV AI
Sbjct: 109 CIGCG--NCVRVCPFDAIELKDGIAYIDPNKCRDCGRCIDICPVGAI 153



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           +    CI CG C   CP DAI+
Sbjct: 104 VDESVCIGCGNCVRVCPFDAIE 125


>gi|282600016|ref|ZP_05972728.2| electron transport protein HydN [Providencia rustigianii DSM 4541]
 gi|282566768|gb|EFB72303.1| electron transport protein HydN [Providencia rustigianii DSM 4541]
          Length = 206

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       ++F+ +   +CI C  C   CP   ++  + P  +    
Sbjct: 83  CRQCEDAPCANVCPNGAISRKDDFVYVDQAKCIGCKTCVIACPYGTMEVISRPVEQQVTA 142

Query: 69  IN 70
           +N
Sbjct: 143 LN 144


>gi|197121507|ref|YP_002133458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter sp. K]
 gi|220916274|ref|YP_002491578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171356|gb|ACG72329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter sp. K]
 gi|219954128|gb|ACL64512.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 100

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 15/90 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +TE CI C    C   CP     +G++   I+PD C +C        C   CPVD 
Sbjct: 1  MATFITEECINCG--ACEPECPNSAISQGDDIYVINPDLCTECVGFHGEEACAAVCPVDC 58

Query: 55 IKPD---TEPGLELWLKINSEYATQWPNIT 81
            PD   TE   + + K+    AT  P+ T
Sbjct: 59 CVPDPNRTETEEQNYGKL----ATIHPDKT 84


>gi|295677023|ref|YP_003605547.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1002]
 gi|295436866|gb|ADG16036.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1002]
          Length = 412

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAI 64



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|126732920|ref|ZP_01748710.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126706626|gb|EBA05701.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 649

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T C+++CP          +++ P  C  CG C   CP  AI  D  P
Sbjct: 280 TRCLDLCPTGAITPDGEHVSVDPLICAGCGACSAVCPSGAISYDAPP 326



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV +CP     +  +   L    D C+ CG+C   CP +AI
Sbjct: 498 VDQDACTLCL--SCVSLCPSGALGDNPDRPELRFQEDACLQCGLCANVCPEEAI 549


>gi|219667057|ref|YP_002457492.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219537317|gb|ACL19056.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++C  C    C   CP        N   I    C++CG+C   CP  AI
Sbjct: 87  YSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHAI 139



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 15/69 (21%)

Query: 2   TYVVTENCILCKHTD--------------CVEVCPVDCFYEGENFL-AIHPDECIDCGVC 46
            ++    C+ C                  C + CP       E+ + +I    C  CG C
Sbjct: 117 AFIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKC 176

Query: 47  EPECPVDAI 55
              CP  A+
Sbjct: 177 IISCPFGAV 185


>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 596

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +TE C  C    C + CPV+    E +   +I+  +CI CG C  +CP  AI
Sbjct: 542 YQITELCKGCGL--CKKACPVEAISGEIKGRHSINQAKCIKCGACMAKCPFKAI 593



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + C  CG+C+  CPV+AI  + +
Sbjct: 546 ELCKGCGLCKKACPVEAISGEIK 568


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C  T C+  CPV            I+ D+CI CG+C   CP  AI
Sbjct: 574 YEVTDSCIGC--TKCLRACPVLAIKGKIREKHIINIDKCIRCGLCYEACPTKAI 625



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 11/19 (57%)

Query: 38  DECIDCGVCEPECPVDAIK 56
           D CI C  C   CPV AIK
Sbjct: 578 DSCIGCTKCLRACPVLAIK 596


>gi|117619673|ref|YP_857013.1| hydrogenase-4 component A [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|117561080|gb|ABK38028.1| hydrogenase-4 component A [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 221

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C +VCPV+   +  + + ++   CI C +C   CP  AI+
Sbjct: 51 CRHCDDAPCSKVCPVEAIRQTGDCVQLNESLCIGCNLCAVACPFGAIQ 98


>gi|332762950|gb|EGJ93200.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-671]
          Length = 205

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|223985321|ref|ZP_03635396.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
 gi|223962708|gb|EEF67145.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
          Length = 202

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +T+NC  C    C+  C  D    G +   I   +C +CG C   CP +AI     P
Sbjct: 105 ITDNCRKCMAKACLASCKFDAISMGLHRAQIDYTKCKECGACARSCPYNAIVVTERP 161



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           I+     C + CPVD     EN +A I   +CI+CG C+  CP  AI+
Sbjct: 155 IVVTERPCSQHCPVDAIRWDENGIAQIDETKCINCGACQAACPFGAIE 202


>gi|164686864|ref|ZP_02210892.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
          16795]
 gi|164604254|gb|EDQ97719.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
          16795]
          Length = 273

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI C  + CV+ CPV      +N   I+ + C  CG C   CPV+A+  D 
Sbjct: 1  MFSVNKEKCIGC--SQCVKDCPVSTISLVDNKAEINNERCFKCGHCIAICPVEAVSTDD 57



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
            +++ ++CI C  C  +CPV  I            +IN+E
Sbjct: 1  MFSVNKEKCIGCSQCVKDCPVSTISLVDNKA-----EINNE 36


>gi|317483797|ref|ZP_07942737.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924900|gb|EFV46046.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 419

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +C  C    C +VCPV+  +      G+ F  + P+ CI CGVC   C    +  +  
Sbjct: 287 GNDCRGCG--KCEKVCPVNAIHMEDGPAGKRFAFVDPERCIGCGVCVRSCAFGQLTLEAR 344

Query: 61  PG 62
           P 
Sbjct: 345 PE 346



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           ++C  CG CE  CPV+AI  +  P  + +  ++ E
Sbjct: 288 NDCRGCGKCEKVCPVNAIHMEDGPAGKRFAFVDPE 322


>gi|315651297|ref|ZP_07904325.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
 gi|315486449|gb|EFU76803.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
          Length = 507

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C EVCP       +   F +I+ ++CI CG C   C  +AI   T P
Sbjct: 117 VTNGCQGCLAHPCAEVCPTGAVKIDKESGFSSINQEKCIKCGRCANVCAYNAIIIQTRP 175



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C   C +D     EN  A I  D+C+ CG C   CP
Sbjct: 152 EKCIKCGRCANVCAYNAIIIQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVNCP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAISD 217


>gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 589

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y++  E CI C  T C + CPVD    E +    I    CI CG C+  CPV AI  +
Sbjct: 534 YIIDPEKCIGC--TKCAKNCPVDAISGEIKKPHVIDDSICIRCGKCKVSCPVGAISVE 589



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M ++V   C          VCP            I P++CI C  C   CPVDAI  + +
Sbjct: 515 MAHIVDHRCP-------ATVCP------SLIHYIIDPEKCIGCTKCAKNCPVDAISGEIK 561

Query: 61  PGL 63
              
Sbjct: 562 KPH 564


>gi|254424789|ref|ZP_05038507.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196192278|gb|EDX87242.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 74

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M++ +VT  C      DCV+ CPV C +EG        ++  I  D CIDCG+C   CPV
Sbjct: 1  MSHTIVTNVCEGV--ADCVDACPVACIHEGPGKNKKGTDWYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+ +P L+ 
Sbjct: 59 EGAILPEEKPELQK 72


>gi|38704092|ref|NP_311370.2| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|168748463|ref|ZP_02773485.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4113]
 gi|168756250|ref|ZP_02781257.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4401]
 gi|168761087|ref|ZP_02786094.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4501]
 gi|168768570|ref|ZP_02793577.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4486]
 gi|168773608|ref|ZP_02798615.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4196]
 gi|168778444|ref|ZP_02803451.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4076]
 gi|168787824|ref|ZP_02812831.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC869]
 gi|168798849|ref|ZP_02823856.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC508]
 gi|195936624|ref|ZP_03082006.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
 gi|208807942|ref|ZP_03250279.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4206]
 gi|208813253|ref|ZP_03254582.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4045]
 gi|208821290|ref|ZP_03261610.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4042]
 gi|209397372|ref|YP_002271950.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4115]
 gi|217327252|ref|ZP_03443335.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. TW14588]
 gi|254794426|ref|YP_003079263.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|261223086|ref|ZP_05937367.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261259362|ref|ZP_05951895.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          FRIK966]
 gi|187770591|gb|EDU34435.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4196]
 gi|188017141|gb|EDU55263.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4113]
 gi|189003522|gb|EDU72508.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4076]
 gi|189356587|gb|EDU75006.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4401]
 gi|189362213|gb|EDU80632.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4486]
 gi|189368471|gb|EDU86887.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4501]
 gi|189372351|gb|EDU90767.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC869]
 gi|189378564|gb|EDU96980.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC508]
 gi|208727743|gb|EDZ77344.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4206]
 gi|208734530|gb|EDZ83217.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4045]
 gi|208741413|gb|EDZ89095.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4042]
 gi|209158772|gb|ACI36205.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. EC4115]
 gi|217319619|gb|EEC28044.1| hydrogenase-4 component A [Escherichia coli O157:H7 str. TW14588]
 gi|254593826|gb|ACT73187.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|320188813|gb|EFW63472.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. EC1212]
 gi|320640985|gb|EFX10469.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. G5101]
 gi|320646267|gb|EFX15194.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H- str. 493-89]
 gi|320651773|gb|EFX20153.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H- str. H 2687]
 gi|320657158|gb|EFX24967.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. 3256-97
          TW 07815]
 gi|320662764|gb|EFX30096.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O55:H7 str. USDA
          5905]
 gi|320667804|gb|EFX34715.1| Hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. LSU-61]
 gi|326340276|gb|EGD64080.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. 1125]
 gi|326344961|gb|EGD68705.1| Hydrogenase-4 component A [Escherichia coli O157:H7 str. 1044]
          Length = 205

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   CV+VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCVQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|317490085|ref|ZP_07948574.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833846|ref|ZP_08166196.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
 gi|316910790|gb|EFV32410.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485204|gb|EGC87676.1| anaerobic dimethyl sulfoxide reductase chain B [Eggerthella sp.
           HGA1]
          Length = 219

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           ++ ++ +C+ C+   C+ VCP     +  + +  ++PD CI C  C   CP +  K ++
Sbjct: 96  SFFISTSCMHCEEPSCMRVCPAGAISKDAHGIVKVNPDVCIGCKYCFQACPYEVPKYNS 154


>gi|315931016|gb|EFV09991.1| formate dehydrogenase iron-sulfur subunit [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 200

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C+ C    C  VCPVDCFY   + + +H  E CI CG C   CP  A +   +
Sbjct: 52  SCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKD 105


>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
 gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
          Length = 606

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECP-- 51
           Y +T+ CI C    C + CP  C            G     I+  +CI CG C   CP  
Sbjct: 542 YFITDKCIGCG--MCAKACPASCIKPVGEVVNEKTGRRRHVINKVDCIKCGACMATCPPK 599

Query: 52  VDAI 55
           + AI
Sbjct: 600 ISAI 603



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKP 57
               D+CI CG+C   CP   IKP
Sbjct: 542 YFITDKCIGCGMCAKACPASCIKP 565


>gi|225028997|ref|ZP_03718189.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
 gi|224953695|gb|EEG34904.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
          Length = 506

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT+ C  C    C+EVCP              I  D CI CG C   C  +AI     P
Sbjct: 116 VTDGCQGCLAHPCMEVCPKKAISLDRVTGKSIIDQDACIKCGRCATVCSYNAIIVQERP 174



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHTD--------------CVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           + CI C                  C + C +      EN    I  D+C+ CG+C   CP
Sbjct: 151 DACIKCGRCATVCSYNAIIVQERPCAKACGMKAITSDENGKATIDYDKCVSCGMCLVNCP 210

Query: 52  VDAIKP 57
             AI  
Sbjct: 211 FGAISD 216


>gi|313667518|ref|YP_004047802.1| ferredoxin [Neisseria lactamica ST-640]
 gi|313004980|emb|CBN86408.1| putative ferredoxin [Neisseria lactamica 020-06]
          Length = 279

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D       F+  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKFMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|315922949|ref|ZP_07919189.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. D2]
 gi|313696824|gb|EFS33659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. D2]
          Length = 403

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 19/101 (18%)

Query: 1  MTYVV---TE-NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECP 51
          M++V    T+  C  C    C++VC  +       Y+G  ++ I   +C+ CG+CE  CP
Sbjct: 1  MSFVPRLATDKQCTGC--FACIDVCNKNAINIVEHYDGHRYVEIDKSKCVGCGMCEQICP 58

Query: 52 VDAIKPDTEPGLELWLKINSEYATQW-PNITTKKESLPSAA 91
             I  + E     +    S++   W  N T +K S    A
Sbjct: 59 ---IVSNFEYQKSEY----SDFYAAWAKNRTHRKTSASGGA 92


>gi|260592587|ref|ZP_05858045.1| conserved domain protein [Prevotella veroralis F0319]
 gi|260535357|gb|EEX17974.1| conserved domain protein [Prevotella veroralis F0319]
          Length = 56

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C++ CPV+   EG +   I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCIDECPVEAISEG-DIYKIDADACTECGTCASVCPNEAI 52


>gi|119720028|ref|YP_920523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525148|gb|ABL78520.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 187

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            Y++   C  C++  CV VCP    Y   + L  I+PD CI C  C   CP  
Sbjct: 55  PYILLVQCQHCENAPCVAVCPTGASYIDRDGLVKINPDLCIGCKYCMTACPYG 107


>gi|140661|sp|P20925|YFRA_PROVU RecName: Full=Frd operon probable iron-sulfur subunit A
 gi|1333800|emb|CAA29509.1| unnamed protein product [Proteus vulgaris]
          Length = 157

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C  C+   C  VCP       +++  +  D+CI C  C   CP   ++  + P +     
Sbjct: 34 CHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACPYGTMEVVSRPVMRKLTA 93

Query: 69 IN 70
          +N
Sbjct: 94 LN 95


>gi|331646162|ref|ZP_08347265.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
 gi|330910677|gb|EGH39187.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           AA86]
 gi|331044914|gb|EGI17041.1| dimethylsulfoxide reductase, chain B [Escherichia coli M605]
          Length = 205

 Score = 59.8 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ L +   D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGLVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|118602832|ref|YP_904047.1| twin-arginine translocation pathway signal [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567771|gb|ABL02576.1| Twin-arginine translocation pathway signal [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 243

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  CK   CV+VCP +   + E+ +  +    CI C  C   CP DA
Sbjct: 109 CQHCKEPPCVDVCPTNASMKREDGIVLVDKHLCIGCRYCMMACPYDA 155


>gi|332981894|ref|YP_004463335.1| electron transfer flavoprotein subunit alpha [Mahella
          australiensis 50-1 BON]
 gi|332699572|gb|AEE96513.1| Electron transfer flavoprotein alpha subunit [Mahella
          australiensis 50-1 BON]
          Length = 397

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ ENC  C    CV  CP        +   I  D C  CG C   C  DAI    E G
Sbjct: 5  IIEENCTGC--AVCVRACPFGAIKMENDKAVIL-DNCTLCGSCADACKFDAIDFQAERG 60


>gi|317499378|ref|ZP_07957646.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316893347|gb|EFV15561.1| glycyl-radical enzyme activating protein family [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 300

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C  C    C  VCP      G++    I P +C  C  C   CP  A+  + E   
Sbjct: 54  EKCAHCG--TCTHVCPNQAISMGDDSYVGIDPSKCAGCLQCVKNCPAKALSYEGEAKD 109


>gi|315925914|ref|ZP_07922119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620735|gb|EFV00711.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 222

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + V E CI C   +C  VCP  C         I  + C+ CG C   CPV  I+
Sbjct: 148 FFVGEGCIGC--RNCSVVCPQSCIDSSSIPAVIDQNRCLHCGRCAEACPVGVIE 199


>gi|218780182|ref|YP_002431500.1| nitrite and sulphite reductase 4Fe-4S region [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761566|gb|ACL04032.1| Putative dissimilatory sulfite reductase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 287

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +NC+ C    C E CP       ++     P  C  C  C   CP D I  + + G
Sbjct: 175 DNCVDCGD--CAESCPDQAIIMKDDRPVYDPHACQGCFNCSQACPADCISLEEKGG 228


>gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
           alkenivorans AK-01]
          Length = 317

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE---- 60
           +   CI C    CVEVCP +     +  + I    C  CG C  ECP  A++   E    
Sbjct: 50  IGSRCIGC--RSCVEVCPHNALELTQEGMQIDRGLCEGCGRCADECPSTAMEMLGEDRTL 107

Query: 61  PGLELWLKINSEYAT 75
             L   L+ +  Y  
Sbjct: 108 EDLAAELEKDRAYFE 122


>gi|15642809|ref|NP_227850.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170288707|ref|YP_001738945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga sp. RQ2]
 gi|281412096|ref|YP_003346175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
 gi|4980519|gb|AAD35128.1|AE001691_2 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170176210|gb|ACB09262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           sp. RQ2]
 gi|281373199|gb|ADA66761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
          Length = 357

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YVV E C+ C    C + CPV           I  ++CI CG C   C   A+ P  + 
Sbjct: 188 PYVVEEKCVACG--TCAKFCPVGAITVT-KVAKIDYEKCIGCGQCIAMCSYGAMSPKWDS 244

Query: 62  GLELWLKINSEYAT 75
             +   K  +EYA 
Sbjct: 245 STDSLSKKMAEYAK 258



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E+   +  ++C+ CG C   CPV AI
Sbjct: 185 ESKPYVVEEKCVACGTCAKFCPVGAI 210


>gi|325478783|gb|EGC81894.1| ferredoxin [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 57

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI  +
Sbjct: 1  MAYRIDENTCISCG--TCEGECPVGAISQGDAAYEIDADACIDCGSCAAVCPVEAIDQE 57


>gi|303243458|ref|ZP_07329800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
 gi|302486019|gb|EFL48941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermococcus okinawensis IH1]
          Length = 151

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C+ C++  C+ +CPV+  Y  EN   ++ + CI CG+CE  CP+ AI  + +   +
Sbjct: 42 CMQCENAPCMNICPVNAIYLKENIPIVNKERCIGCGMCEIACPIGAIFIEEKVAHK 97


>gi|91772585|ref|YP_565277.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcoides
           burtonii DSM 6242]
 gi|91711600|gb|ABE51527.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A with
           C-terminal mvhD-like electron transfer domain
           [Methanococcoides burtonii DSM 6242]
          Length = 786

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 19/83 (22%)

Query: 3   YVVTENCILCKHTDCVEVCPVD---CFYEG---------------ENFLAIHPDECIDCG 44
           YV+ +NC  C   +C  VCPVD    F  G                    I+ D C+ CG
Sbjct: 237 YVIIDNCKGCID-ECARVCPVDISNPFDSGLGKTKAINMPIPQAIPQTAFINSDYCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELWL 67
           +C+  CP DAI  + +     + 
Sbjct: 296 LCKQACPADAIDFNMKAEEFTFT 318



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  E CI C    C + C  +     +    +    C  CG C   CPVDAI      
Sbjct: 573 ACVDAEKCIGC--RMCEDTCNFNTIKVIDGKAVVDEISCQTCGSCSASCPVDAIDMPHST 630

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 631 DAQIKAQIRAAL 642


>gi|145756|gb|AAA83844.1| anaerobic dimethyl sulfoxide reductase [Escherichia coli]
          Length = 207

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|331000171|ref|ZP_08323861.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
 gi|329572656|gb|EGG54291.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
          Length = 194

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y V   C  C    CV+VCP    +  E +  + I   +CI CG C   CP  A   D 
Sbjct: 61  YYVPVGCNECADPACVKVCPTKAHFKRESDGLVLIDEKKCIGCGACAQACPYGAPVLDE 119


>gi|308049671|ref|YP_003913237.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307631861|gb|ADN76163.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 205

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C +  CVEVCPV   +    +  + + P  CI C  C   CP DA + D 
Sbjct: 63  SYYVSIGCNHCDNPVCVEVCPVGSMHKRRSDGLVHVDPAVCIGCEACAFACPYDAPQFDR 122

Query: 60  EPG 62
           E G
Sbjct: 123 ERG 125


>gi|218779472|ref|YP_002430790.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760856|gb|ACL03322.1| Putative fusion protein, heterodisulfide reductase (HdrA)
           /F420-non-reducing hydrogenase (MvhD) [Desulfatibacillum
           alkenivorans AK-01]
          Length = 814

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+TE+C  C    C EVCP +             ++   C  CG C  ECP  AI  +  
Sbjct: 594 VITEHCKACG--KCAEVCPYNAISVDPKKKIPAVVNTAACAGCGTCGAECPFGAITMNHY 651

Query: 61  PGLELWLKINSEYAT 75
              ++  ++++  A 
Sbjct: 652 TDAQITNQVDTMLAE 666



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECID-- 42
           YVV   C  C   +C +VCPV   D F  G                +   I+ +EC+   
Sbjct: 252 YVVEGECTACG--ECAKVCPVVRPDEFNLGLSSRKAIYSPFPQAVPSSYVININECLGDN 309

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              C  C   C  + I        
Sbjct: 310 PSVCAKCVQACEKNCINFHMSDEQ 333


>gi|322419390|ref|YP_004198613.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
 gi|320125777|gb|ADW13337.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
          Length = 437

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            V+T  CI C    C  VCPV+     E     I  ++CI C  C   CP  A++    
Sbjct: 14 ARVITGKCIACGAR-CQSVCPVNGVEMSEQGEPIIEAEKCIGCVKCVKVCPAGALEMFYT 72

Query: 61 PGL 63
          P  
Sbjct: 73 PEE 75


>gi|17230406|ref|NP_486954.1| hypothetical protein asl2914 [Nostoc sp. PCC 7120]
 gi|75907209|ref|YP_321505.1| 4Fe-4S ferredoxin [Anabaena variabilis ATCC 29413]
 gi|17132008|dbj|BAB74613.1| asl2914 [Nostoc sp. PCC 7120]
 gi|75700934|gb|ABA20610.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anabaena
          variabilis ATCC 29413]
          Length = 74

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTDVCEGV--ADCVDACPVACIHEGPGKNVKGTDWYWIDFSTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EKAIVPEERPDLQK 72


>gi|312959250|ref|ZP_07773768.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
 gi|311286510|gb|EFQ65073.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
          Length = 320

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 74  AYIREAECIGC--TKCIQACPVDAIVGAAKLMHTVISDECTGCDLCVAPCPVDCIE 127



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+++ C  C    CV  CPVDC     
Sbjct: 103 MHTVISDECTGCDL--CVAPCPVDCIEMRP 130


>gi|282896688|ref|ZP_06304696.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphidiopsis brookii D9]
 gi|281198406|gb|EFA73294.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphidiopsis brookii D9]
          Length = 75

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV  CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTEICQGV--ADCVAACPVACIHEGPGKNIQGTDWYWIDFTTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P   P L+ 
Sbjct: 59 EGAIVPQERPELQK 72


>gi|187733724|ref|YP_001880344.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shigella
          boydii CDC 3083-94]
 gi|187430716|gb|ACD09990.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shigella
          boydii CDC 3083-94]
          Length = 148

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI C  C   CP  A + + E
Sbjct: 3  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAE 62

Query: 61 PGL 63
           G 
Sbjct: 63 KGH 65


>gi|150006680|ref|YP_001301423.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503]
 gi|149935104|gb|ABR41801.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503]
          Length = 478

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  + CI CG C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVY 169



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           E CI C                  C EVCPV    + +  +  I   +CI CG C   CP
Sbjct: 150 ETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDKYGVEHIDESKCIYCGKCVNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|153003731|ref|YP_001378056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027304|gb|ABS25072.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 309

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C+   C+E CP       E   + + PD C  CG C   CP   I+   E G
Sbjct: 126 SDVCKHCERAGCLEACPTGAIVRTEFGSVYVQPDVCNGCGYCVSACPFGVIERREEDG 183


>gi|329936419|ref|ZP_08286184.1| ferredoxin iron-sulfur binding domain protein [Streptomyces
           griseoaurantiacus M045]
 gi|329304215|gb|EGG48096.1| ferredoxin iron-sulfur binding domain protein [Streptomyces
           griseoaurantiacus M045]
          Length = 337

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I+   + G
Sbjct: 148 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQEDVCNGCGYCVPACPYGVIEQRPDDG 205


>gi|257792589|ref|YP_003183195.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476486|gb|ACV56806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 213

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP  C +  +  + +HPD+CI C  C   CP  A++  TE
Sbjct: 58  CHHCAEAPCVDACPTGCLFTDDEHVGVHPDKCIGCRNCVLACPYGAVEIVTE 109


>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 610

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +YV++ E C+ C  T C  VCP +  +     +  I  + C+ CG C   C   AI   T
Sbjct: 544 SYVISPEKCVGC--TACARVCPTNAIHGEVRKVHEIDQEACVRCGSCIEVCRFGAISKVT 601

Query: 60  EP 61
             
Sbjct: 602 PA 603



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I P++C+ C  C   CP +AI  +     E
Sbjct: 545 YVISPEKCVGCTACARVCPTNAIHGEVRKVHE 576


>gi|260913421|ref|ZP_05919900.1| anaerobic dimethyl sulfoxide reductase [Pasteurella dagmatis ATCC
           43325]
 gi|260632495|gb|EEX50667.1| anaerobic dimethyl sulfoxide reductase [Pasteurella dagmatis ATCC
           43325]
          Length = 205

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV VCP    ++  +   I + D CI C  C   CP DA + D 
Sbjct: 60  SYYMSISCNHCDNPACVTVCPTGAMHKNADGFVIVNEDICIGCRYCHMACPYDAPQYDV 118


>gi|170696011|ref|ZP_02887149.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           graminis C4D1M]
 gi|170139091|gb|EDT07281.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           graminis C4D1M]
          Length = 413

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 19/94 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPDT 59
           E CI C    C E CP+D     +N   +  D C  C  C P CP  AI       K D 
Sbjct: 18  EICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAIDNWRTVLKADA 75

Query: 60  EPGLELWLKINSEYATQWPNITTKKE-SLPSAAK 92
            P  E +          W  +  +   ++P+A +
Sbjct: 76  YPIEEQF---------TWDVLPEQNTMAVPAADE 100



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|46198462|ref|YP_004129.1| nrfC protein [Thermus thermophilus HB27]
 gi|190016225|pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
 gi|190016228|pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
 gi|190016231|pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (Uq1)
 gi|190016234|pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (Uq1)
 gi|190016237|pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 gi|190016240|pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 gi|190016243|pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
 gi|190016246|pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
 gi|46196084|gb|AAS80502.1| nrfC protein [Thermus thermophilus HB27]
          Length = 195

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           E C+ C++  CV VCP    Y+ ++ L  + P +CI CG C   CP DA
Sbjct: 56  EQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYDA 104


>gi|212696414|ref|ZP_03304542.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
          7454]
 gi|256545289|ref|ZP_05472653.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325849213|ref|ZP_08170664.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676586|gb|EEB36193.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
          7454]
 gi|256398970|gb|EEU12583.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325480213|gb|EGC83280.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 58

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + EN CI C    C   CPV    +G+    I  D CIDCG C   CPV+AI P
Sbjct: 1  MAYRIDENTCISCG--SCEGECPVQAIEQGDAAYEIDEDACIDCGSCAAVCPVEAISP 56



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I  + CI CG CE ECPV AI+   
Sbjct: 5  IDENTCISCGSCEGECPVQAIEQGD 29


>gi|209516646|ref|ZP_03265499.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          H160]
 gi|209502921|gb|EEA02924.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          H160]
          Length = 412

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVPPCPTGAI 64



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|91203437|emb|CAJ71090.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 700

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV    C+ C    CV VCP D   F  GE    I  D C  CG+C  ECP  AI+  T
Sbjct: 491 AYVDEHLCVGC--ITCVRVCPFDVPEFRNGEITAYIGGD-CQSCGLCIVECPAKAIRFKT 547

Query: 60  EPGLELWLKINSEY 73
                   ++ + +
Sbjct: 548 PLEDSGRERLKALF 561


>gi|148263283|ref|YP_001229989.1| electron transfer flavoprotein, alpha subunit [Geobacter
          uraniireducens Rf4]
 gi|146396783|gb|ABQ25416.1| electron transfer flavoprotein, alpha subunit [Geobacter
          uraniireducens Rf4]
          Length = 441

 Score = 59.4 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +   CI C    C   CPVD     +     I+  +CI C  C   CP  AI+    P  
Sbjct: 19 IAGKCIACGAR-CQSACPVDAIEMNDAGEPIINESKCIGCVKCVKVCPAQAIEMFFTPEE 77

Query: 64 EL 65
          + 
Sbjct: 78 QK 79


>gi|161870852|ref|YP_001600026.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442]
 gi|161596405|gb|ABX74065.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442]
          Length = 279

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+ VCP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRVCPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRVCPADAI 94



 Score = 36.7 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|18977217|ref|NP_578574.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
 gi|18892876|gb|AAL80969.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
          Length = 627

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV + C  CK    +  CP   +   +  + I P  C  CGVC   CP DAIK  +E
Sbjct: 570 VVEDRCTGCKACILLTGCPALVYEPEKKKVRIDPLICTGCGVCNQLCPFDAIKFPSE 626


>gi|319638998|ref|ZP_07993756.1| ferredoxin [Neisseria mucosa C102]
 gi|317399902|gb|EFV80565.1| ferredoxin [Neisseria mucosa C102]
          Length = 282

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +
Sbjct: 79  ACIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMVPVSQPF 134

Query: 67  LKINSEYAT 75
           L     ++T
Sbjct: 135 LPSARRFST 143



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 75 IDESACIGCTACIRACPVDAI 95



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CV  CPVDC 
Sbjct: 102 MHTVISDECTGCGL--CVTPCPVDCI 125


>gi|119494011|ref|ZP_01624569.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106]
 gi|119452261|gb|EAW33459.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106]
          Length = 75

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV  CPV C ++G        ++  I  D CIDCG+C   CPV
Sbjct: 1  MPHTIVTDVCEGV--ADCVAACPVACIHDGPGKNAKGTDWYWIDFDTCIDCGICLTVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+ +PGL+ 
Sbjct: 59 EGAILPEEQPGLQK 72


>gi|299135388|ref|ZP_07028578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589796|gb|EFI50001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 658

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + C    C+++CP        + +AI  D C  CG C   CP  A      P   L  K+
Sbjct: 266 VGC--HRCLDLCPTGAITPNGDHVAIDADICAGCGQCATACPTGAAAYALPPADVLIHKL 323

Query: 70  NSEYAT 75
            +  A 
Sbjct: 324 RAMLAA 329



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C LC    CV VCP     +  +   L    D C+ CG+CE  CP   I+   +    
Sbjct: 503 DGCTLCL--SCVSVCPTGALSDDPDRPMLRFAEDACVQCGLCEATCPEKVIELVPQIDFR 560

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKM-DGVKQKYE 101
               +      + P +  +           D V  K E
Sbjct: 561 AATALTRTIKEEEPALCVRCHKPFGVKSTIDRVAAKLE 598


>gi|299149444|ref|ZP_07042501.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
 gi|298512631|gb|EFI36523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|261339676|ref|ZP_05967534.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318503|gb|EFC57441.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|261339233|ref|ZP_05967091.1| hypothetical protein ENTCAN_05467 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319088|gb|EFC58026.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|323526712|ref|YP_004228865.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1001]
 gi|323383714|gb|ADX55805.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
          CCGE1001]
          Length = 414

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEETCPIDAITHDDNNYVVRADVCNGCMACVPPCPTGAI 64



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|253571979|ref|ZP_04849384.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838576|gb|EES66662.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|212710441|ref|ZP_03318569.1| hypothetical protein PROVALCAL_01503 [Providencia alcalifaciens DSM
           30120]
 gi|212686861|gb|EEB46389.1| hypothetical protein PROVALCAL_01503 [Providencia alcalifaciens DSM
           30120]
          Length = 194

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 3   YVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++    C  C+   C  VCP       ++F+ +   +CI C  C   CP   ++    
Sbjct: 63  YTISTAVICRQCEDAPCANVCPNGAISRKDDFVYVDQSKCIGCKTCVIACPYGTMEVIIR 122

Query: 61  PGLELWLKIN 70
           P  +    +N
Sbjct: 123 PVAQQTTALN 132


>gi|167768087|ref|ZP_02440140.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|167710416|gb|EDS20995.1| hypothetical protein CLOSS21_02632 [Clostridium sp. SS2/1]
 gi|291561083|emb|CBL39883.1| Pyruvate-formate lyase-activating enzyme [butyrate-producing
           bacterium SSC/2]
          Length = 300

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C  C    C  VCP      G++    I P +C  C  C   CP  A+  + E   
Sbjct: 54  EKCAHCG--TCTHVCPNQAISMGDDSYVGIDPSKCAGCLQCVKNCPAKALSYEGEAKD 109


>gi|307721543|ref|YP_003892683.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979636|gb|ADN09671.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 212

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C  +CPV   +  EN +  I  + CI C  C   CP  AI  D E
Sbjct: 57  CNHCENAPCERICPVSALHYIENGIVNIDKERCIGCAGCVMACPYGAIYIDPE 109



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 24/72 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPV 52
           E CI C    CV  CP            I P     D+C  C           C   CPV
Sbjct: 87  ERCIGCAG--CVMACPYGAI-------YIDPETQTADKCTYCAHRIASSMMPACVVACPV 137

Query: 53  DA-IKPDTEPGL 63
           +A I  D +   
Sbjct: 138 EANIFGDLDDPA 149


>gi|298387444|ref|ZP_06996996.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
 gi|298259651|gb|EFI02523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|255016559|ref|ZP_05288685.1| putative hydrogenase [Bacteroides sp. 2_1_7]
 gi|256842203|ref|ZP_05547707.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262384870|ref|ZP_06078002.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377650|ref|ZP_06987601.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_19]
 gi|301308948|ref|ZP_07214893.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3]
 gi|256736087|gb|EEU49417.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262293586|gb|EEY81522.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265353|gb|EFI07015.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_19]
 gi|300832974|gb|EFK63599.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3]
          Length = 478

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  + CI CG C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVY 169



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           E CI C                  C EVCPV    + E  +  I   +CI CG C   CP
Sbjct: 150 ETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|284920748|emb|CBG33811.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           042]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|256810830|ref|YP_003128199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256794030|gb|ACV24699.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 152

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C+  CP +     ++ + +  D+CI CG+C   CP  AI+ D
Sbjct: 47 CMHCDKNPCLYACPENAIERIDDKVVVIKDKCIGCGLCAIACPFGAIRID 96


>gi|257063349|ref|YP_003143021.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791002|gb|ACV21672.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  CK+  CV+VCP    +  EN    I  D+CI C  C   CP      + E G
Sbjct: 63  SCQHCKNPACVDVCPTGASHRTENGTVQIDHDKCIGCQFCVMACPYGVRYLNEEEG 118


>gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
 gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
          Length = 633

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y+++ E C  C  + C   CPV       +    I  D+CI CG CE  C   AI  + 
Sbjct: 577 YIISPERCKGC--SKCARNCPVGAISGRIKEPFVIDNDKCIKCGACESSCAFGAIHIEE 633



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 5/45 (11%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
                 CV                I P+ C  C  C   CPV AI
Sbjct: 560 HVVDKKCVSHT-----CTALRRYIISPERCKGCSKCARNCPVGAI 599


>gi|145591154|ref|YP_001153156.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282922|gb|ABP50504.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 232

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V+  C  C+   C  VCP    Y+    +  ++ D CI CG C   CP  +        
Sbjct: 64  FVSSLCYHCEDAPCQRVCPTGATYKTPEGVVLVNKDLCIGCGYCIIACPYGSRYRPEPHE 123

Query: 63  LEL 65
              
Sbjct: 124 WHE 126


>gi|320196609|gb|EFW71232.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           WV_060327]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAT 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|225076878|ref|ZP_03720077.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
 gi|224951764|gb|EEG32973.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 81  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMVPVSQPFL 136

Query: 68  KINSEYAT 75
                ++T
Sbjct: 137 PSARRFST 144



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 76 IDEAVCIGCTACIRACPVDAI 96



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CV  CPVDC 
Sbjct: 103 MHTVISDECTGCGL--CVTPCPVDCI 126


>gi|89897355|ref|YP_520842.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336803|dbj|BAE86398.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 228

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           YV T  C  C +  CV+ CP    Y+ +  L +H P++CI C  C   CP + I  +++ 
Sbjct: 53  YVPT-LCNHCDNAACVKACPTKAMYKDDKGLTLHNPNKCIGCKSCMQACPYEVINYNSKE 111

Query: 62  GLELWLK 68
              +W  
Sbjct: 112 PHGIWRD 118


>gi|330999867|ref|ZP_08323568.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329573552|gb|EGG55154.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 222

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C++  C++VCPV   Y G +    I   +CI C  C   CP  A K         +
Sbjct: 64  SCMHCENPACMKVCPVKAVYFGPHGEVLIDQKKCIGCKGCLAACPYSAPKFSDPNKQSYF 123

Query: 67  LKI 69
             +
Sbjct: 124 GDL 126


>gi|323699753|ref|ZP_08111665.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459685|gb|EGB15550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 242

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    CVE CP    +  G+  + +  D CI CG C   CP +A
Sbjct: 56  ACMHCDKPSCVEACPTGATYKAGDGSVVVDHDRCIGCGGCVAACPYNA 103


>gi|309776266|ref|ZP_07671256.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915985|gb|EFP61735.1| pyruvate formate-lyase-activating enzyme [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 308

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +CI C    CV +CP       E  + I P +CI C  C   CPV A+  + E
Sbjct: 54  DCIQC--QSCVNICPKHAISLSEQRIQIDPRQCIGCMQCLSFCPVHALSNEGE 104


>gi|7546410|pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
          Peptostreptococcus Asaccharolyticus
          Length = 55

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+ ++CI C    C   CPV+C  EG    AI  D CIDCG C   CPV A  P+ 
Sbjct: 1  AYVINDSCIACG--ACKPECPVNCIQEGS-IYAIDADSCIDCGSCASVCPVGAPNPED 55


>gi|222823395|ref|YP_002574969.1| formate dehydrogenase, beta (iron-sulfur) subunit [Campylobacter
           lari RM2100]
 gi|222538617|gb|ACM63718.1| formate dehydrogenase, beta (iron-sulfur) subunit [Campylobacter
           lari RM2100]
          Length = 189

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T  C  C    C +VCPV CFY   + + +H    CI CG C   CP  A +   +    
Sbjct: 53  TLACQHCTDAPCEQVCPVKCFYIRADGIVLHDKKTCIGCGYCLYACPFGAPQFPRDGAFG 112

Query: 65  LWLKIN 70
           +  +++
Sbjct: 113 IKGEMD 118


>gi|218700587|ref|YP_002408216.1| dimethyl sulfoxide reductase subunit B [Escherichia coli IAI39]
 gi|218370573|emb|CAR18380.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli IAI39]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|56750734|ref|YP_171435.1| ferredoxin-like protein [Synechococcus elongatus PCC 6301]
 gi|81299625|ref|YP_399833.1| ferredoxin-like protein [Synechococcus elongatus PCC 7942]
 gi|56685693|dbj|BAD78915.1| ferredoxin-like protein [Synechococcus elongatus PCC 6301]
 gi|81168506|gb|ABB56846.1| ferredoxin-like protein [Synechococcus elongatus PCC 7942]
          Length = 74

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPV 52
          M + +VT  C      DCV+ CPV C  EG         +  I    CIDCG+C   CPV
Sbjct: 1  MAHTIVTNTCEGV--ADCVDACPVACIQEGPGRNQKGTTWYWIDFSTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAILPEERPELQQ 72


>gi|15800758|ref|NP_286772.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 EDL933]
 gi|15830234|ref|NP_309007.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. Sakai]
 gi|168752123|ref|ZP_02777145.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168756986|ref|ZP_02781993.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168762971|ref|ZP_02787978.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168769888|ref|ZP_02794895.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168776254|ref|ZP_02801261.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168783805|ref|ZP_02808812.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787323|ref|ZP_02812330.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168801423|ref|ZP_02826430.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|195939558|ref|ZP_03084940.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808514|ref|ZP_03250851.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208815388|ref|ZP_03256567.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822781|ref|ZP_03263100.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399354|ref|YP_002269568.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325565|ref|ZP_03441649.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254792095|ref|YP_003076932.1| dimethyl sulfoxide reductase subunit B [Escherichia coli O157:H7
           str. TW14359]
 gi|261227400|ref|ZP_05941681.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256177|ref|ZP_05948710.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. FRIK966]
 gi|12514060|gb|AAG55382.1|AE005279_2 anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. EDL933]
 gi|13360439|dbj|BAB34403.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768357|gb|EDU32201.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188013963|gb|EDU52085.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188998922|gb|EDU67908.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189355906|gb|EDU74325.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189361185|gb|EDU79604.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189366789|gb|EDU85205.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372640|gb|EDU91056.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189376436|gb|EDU94852.1| dimethylsulfoxide reductase, B subunit [Escherichia coli O157:H7
           str. EC508]
 gi|208728315|gb|EDZ77916.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732036|gb|EDZ80724.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738266|gb|EDZ85949.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160754|gb|ACI38187.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209774998|gb|ACI85811.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775000|gb|ACI85812.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775002|gb|ACI85813.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209775006|gb|ACI85815.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|217321786|gb|EEC30210.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254591495|gb|ACT70856.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. TW14359]
 gi|320192618|gb|EFW67259.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637765|gb|EFX07557.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. G5101]
 gi|320642889|gb|EFX12090.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H- str. 493-89]
 gi|320648346|gb|EFX17001.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H- str. H 2687]
 gi|320664277|gb|EFX31428.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326338209|gb|EGD62038.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|326346186|gb|EGD69924.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|16128862|ref|NP_415415.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30062382|ref|NP_836553.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 2457T]
 gi|74311453|ref|YP_309872.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella sonnei
           Ss046]
 gi|89107745|ref|AP_001525.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. W3110]
 gi|91209998|ref|YP_539984.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           UTI89]
 gi|110804895|ref|YP_688415.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           5 str. 8401]
 gi|117623079|ref|YP_851992.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           APEC O1]
 gi|157158279|ref|YP_001462093.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|157160418|ref|YP_001457736.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|170020703|ref|YP_001725657.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|170080553|ref|YP_001729873.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170769322|ref|ZP_02903775.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|187732026|ref|YP_001880908.1| dimethylsulfoxide reductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|188494050|ref|ZP_03001320.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|191167581|ref|ZP_03029392.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|193064681|ref|ZP_03045760.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|193070738|ref|ZP_03051673.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194428398|ref|ZP_03060939.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194435161|ref|ZP_03067394.1| dimethylsulfoxide reductase, B subunit [Shigella dysenteriae 1012]
 gi|194438684|ref|ZP_03070771.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|209918144|ref|YP_002292228.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE11]
 gi|218553481|ref|YP_002386394.1| dimethyl sulfoxide reductase, anaerobic subunit B [Escherichia coli
           IAI1]
 gi|218557803|ref|YP_002390716.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli S88]
 gi|218688738|ref|YP_002396950.1| dimethyl sulfoxide reductase, anaerobic subunit B [Escherichia coli
           ED1a]
 gi|218694368|ref|YP_002402035.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli 55989]
 gi|218704324|ref|YP_002411843.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli UMN026]
 gi|237707115|ref|ZP_04537596.1| dimethylsulfoxide reductase [Escherichia sp. 3_2_53FAA]
 gi|238900153|ref|YP_002925949.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BW2952]
 gi|253774076|ref|YP_003036907.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161009|ref|YP_003044117.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli B str. REL606]
 gi|256020977|ref|ZP_05434842.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Shigella sp.
           D9]
 gi|256023404|ref|ZP_05437269.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia sp.
           4_1_40B]
 gi|260843145|ref|YP_003220923.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O103:H2 str. 12009]
 gi|260854186|ref|YP_003228077.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O26:H11 str. 11368]
 gi|260867067|ref|YP_003233469.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O111:H- str. 11128]
 gi|291281898|ref|YP_003498716.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. CB9615]
 gi|293409273|ref|ZP_06652849.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414177|ref|ZP_06656826.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|293433192|ref|ZP_06661620.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           B088]
 gi|298379983|ref|ZP_06989588.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           FVEC1302]
 gi|300817003|ref|ZP_07097222.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 107-1]
 gi|300823634|ref|ZP_07103761.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 119-7]
 gi|300901678|ref|ZP_07119736.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 198-1]
 gi|300902948|ref|ZP_07120892.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 84-1]
 gi|300921071|ref|ZP_07137455.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 115-1]
 gi|300926533|ref|ZP_07142322.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 182-1]
 gi|300929588|ref|ZP_07145051.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 187-1]
 gi|300937611|ref|ZP_07152420.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 21-1]
 gi|300949745|ref|ZP_07163722.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 116-1]
 gi|300954718|ref|ZP_07167153.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 175-1]
 gi|301022880|ref|ZP_07186713.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 69-1]
 gi|301024414|ref|ZP_07188099.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|301302498|ref|ZP_07208629.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 124-1]
 gi|301325782|ref|ZP_07219230.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 78-1]
 gi|301646340|ref|ZP_07246228.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|306812649|ref|ZP_07446842.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           NC101]
 gi|307137523|ref|ZP_07496879.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           H736]
 gi|307311718|ref|ZP_07591358.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|309795296|ref|ZP_07689714.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 145-7]
 gi|312971022|ref|ZP_07785201.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|331641416|ref|ZP_08342551.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331662310|ref|ZP_08363233.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331667269|ref|ZP_08368134.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331672436|ref|ZP_08373226.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA280]
 gi|331676681|ref|ZP_08377377.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331682404|ref|ZP_08383023.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332282202|ref|ZP_08394615.1| dimethyl sulfoxide reductase [Shigella sp. D9]
 gi|2506394|sp|P18776|DMSB_ECOLI RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|1651422|dbj|BAA35627.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K12 substr. W3110]
 gi|1787122|gb|AAC73981.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. MG1655]
 gi|30040628|gb|AAP16359.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 2457T]
 gi|73854930|gb|AAZ87637.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella sonnei
           Ss046]
 gi|91071572|gb|ABE06453.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           UTI89]
 gi|110614443|gb|ABF03110.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           5 str. 8401]
 gi|115512203|gb|ABJ00278.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           APEC O1]
 gi|157066098|gb|ABV05353.1| dimethylsulfoxide reductase, B subunit [Escherichia coli HS]
 gi|157080309|gb|ABV20017.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E24377A]
 gi|169755631|gb|ACA78330.1| dimethylsulfoxide reductase, chain B [Escherichia coli ATCC 8739]
 gi|169888388|gb|ACB02095.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170121974|gb|EDS90905.1| dimethylsulfoxide reductase, B subunit [Escherichia albertii
           TW07627]
 gi|187429018|gb|ACD08292.1| dimethylsulfoxide reductase, B subunit [Shigella boydii CDC
           3083-94]
 gi|188489249|gb|EDU64352.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           53638]
 gi|190902342|gb|EDV62080.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B7A]
 gi|192927738|gb|EDV82353.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E22]
 gi|192955931|gb|EDV86399.1| dimethylsulfoxide reductase, B subunit [Escherichia coli E110019]
 gi|194413613|gb|EDX29894.1| dimethylsulfoxide reductase, B subunit [Escherichia coli B171]
 gi|194416599|gb|EDX32735.1| dimethylsulfoxide reductase, B subunit [Shigella dysenteriae 1012]
 gi|194422316|gb|EDX38316.1| dimethylsulfoxide reductase, B subunit [Escherichia coli 101-1]
 gi|209775004|gb|ACI85814.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli]
 gi|209911403|dbj|BAG76477.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE11]
 gi|218351100|emb|CAU96804.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli 55989]
 gi|218360249|emb|CAQ97799.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli IAI1]
 gi|218364572|emb|CAR02258.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli S88]
 gi|218426302|emb|CAR07127.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli ED1a]
 gi|218431421|emb|CAR12299.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli UMN026]
 gi|222032629|emb|CAP75368.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           LF82]
 gi|226898325|gb|EEH84584.1| dimethylsulfoxide reductase [Escherichia sp. 3_2_53FAA]
 gi|238860773|gb|ACR62771.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BW2952]
 gi|242376710|emb|CAQ31423.1| dimethyl sulfoxide reductase, chain B, subunit of dimethyl
           sulfoxide reductase [Escherichia coli BL21(DE3)]
 gi|253325120|gb|ACT29722.1| dimethylsulfoxide reductase, chain B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972910|gb|ACT38581.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli B str. REL606]
 gi|253977124|gb|ACT42794.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli BL21(DE3)]
 gi|257752835|dbj|BAI24337.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O26:H11 str. 11368]
 gi|257758292|dbj|BAI29789.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O103:H2 str. 12009]
 gi|257763423|dbj|BAI34918.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O111:H- str. 11128]
 gi|260449959|gb|ACX40381.1| dimethylsulfoxide reductase, chain B [Escherichia coli DH1]
 gi|281178029|dbj|BAI54359.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           SE15]
 gi|281600223|gb|ADA73207.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           2002017]
 gi|290761771|gb|ADD55732.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324011|gb|EFE63433.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           B088]
 gi|291434235|gb|EFF07208.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|291469741|gb|EFF12225.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491373|gb|ADE90129.1| anaerobic dimethyl sulfoxide reductase, B subunit [Escherichia coli
           IHE3034]
 gi|298279681|gb|EFI21189.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           FVEC1302]
 gi|299880386|gb|EFI88597.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 196-1]
 gi|300318329|gb|EFJ68113.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 175-1]
 gi|300354902|gb|EFJ70772.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 198-1]
 gi|300397342|gb|EFJ80880.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 69-1]
 gi|300405009|gb|EFJ88547.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 84-1]
 gi|300411922|gb|EFJ95232.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 115-1]
 gi|300417450|gb|EFK00761.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 182-1]
 gi|300450859|gb|EFK14479.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 116-1]
 gi|300457341|gb|EFK20834.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 21-1]
 gi|300462476|gb|EFK25969.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 187-1]
 gi|300523834|gb|EFK44903.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 119-7]
 gi|300530355|gb|EFK51417.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 107-1]
 gi|300842337|gb|EFK70097.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 124-1]
 gi|300847425|gb|EFK75185.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 78-1]
 gi|301075443|gb|EFK90249.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|305853412|gb|EFM53851.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           NC101]
 gi|306908273|gb|EFN38772.1| dimethylsulfoxide reductase, chain B [Escherichia coli W]
 gi|307627675|gb|ADN71979.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           UM146]
 gi|308120946|gb|EFO58208.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 145-7]
 gi|309701171|emb|CBJ00471.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           ETEC H10407]
 gi|310336783|gb|EFQ01950.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1827-70]
 gi|312945418|gb|ADR26245.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|313650193|gb|EFS14605.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2a str.
           2457T]
 gi|315060180|gb|ADT74507.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli W]
 gi|315135543|dbj|BAJ42702.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           DH1]
 gi|315257935|gb|EFU37903.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 85-1]
 gi|315287518|gb|EFU46929.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 110-3]
 gi|315296137|gb|EFU55446.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 16-3]
 gi|315619207|gb|EFU99786.1| dimethylsulfoxide reductase, chain B [Escherichia coli 3431]
 gi|320175336|gb|EFW50442.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella
           dysenteriae CDC 74-1112]
 gi|320202290|gb|EFW76861.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           EC4100B]
 gi|320654184|gb|EFX22252.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320659808|gb|EFX27364.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|323157219|gb|EFZ43342.1| dimethylsulfoxide reductase, chain B [Escherichia coli EPECa14]
 gi|323159520|gb|EFZ45500.1| dimethylsulfoxide reductase, chain B [Escherichia coli E128010]
 gi|323165356|gb|EFZ51143.1| dimethylsulfoxide reductase, chain B [Shigella sonnei 53G]
 gi|323175008|gb|EFZ60623.1| dimethylsulfoxide reductase, chain B [Escherichia coli LT-68]
 gi|323175483|gb|EFZ61078.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1180]
 gi|323185399|gb|EFZ70763.1| dimethylsulfoxide reductase, chain B [Escherichia coli 1357]
 gi|323379263|gb|ADX51531.1| dimethylsulfoxide reductase, chain B [Escherichia coli KO11]
 gi|323938001|gb|EGB34263.1| dimethylsulfoxide reductase [Escherichia coli E1520]
 gi|323942811|gb|EGB38976.1| dimethylsulfoxide reductase [Escherichia coli E482]
 gi|323947316|gb|EGB43324.1| dimethylsulfoxide reductase [Escherichia coli H120]
 gi|323953395|gb|EGB49261.1| dimethylsulfoxide reductase [Escherichia coli H252]
 gi|323958202|gb|EGB53911.1| dimethylsulfoxide reductase [Escherichia coli H263]
 gi|323962943|gb|EGB58516.1| dimethylsulfoxide reductase [Escherichia coli H489]
 gi|323967142|gb|EGB62566.1| dimethylsulfoxide reductase [Escherichia coli M863]
 gi|323973232|gb|EGB68424.1| dimethylsulfoxide reductase [Escherichia coli TA007]
 gi|323976718|gb|EGB71806.1| dimethylsulfoxide reductase [Escherichia coli TW10509]
 gi|324009810|gb|EGB79029.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 57-2]
 gi|324019014|gb|EGB88233.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 117-3]
 gi|324116108|gb|EGC10032.1| dimethylsulfoxide reductase [Escherichia coli E1167]
 gi|327253683|gb|EGE65312.1| dimethylsulfoxide reductase, chain B [Escherichia coli STEC_7v]
 gi|331038214|gb|EGI10434.1| dimethylsulfoxide reductase, chain B [Escherichia coli H736]
 gi|331060732|gb|EGI32696.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA143]
 gi|331065625|gb|EGI37518.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA271]
 gi|331070342|gb|EGI41707.1| dimethylsulfoxide reductase, chain B [Escherichia coli TA280]
 gi|331075370|gb|EGI46668.1| dimethylsulfoxide reductase, chain B [Escherichia coli H591]
 gi|331080035|gb|EGI51214.1| dimethylsulfoxide reductase, chain B [Escherichia coli H299]
 gi|332091030|gb|EGI96120.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 155-74]
 gi|332104554|gb|EGJ07900.1| dimethyl sulfoxide reductase [Shigella sp. D9]
 gi|332342337|gb|AEE55671.1| dimethylsulfoxide reductase DmsB [Escherichia coli UMNK88]
 gi|332759810|gb|EGJ90113.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 4343-70]
 gi|332760458|gb|EGJ90747.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2747-71]
 gi|332768073|gb|EGJ98259.1| dimethylsulfoxide reductase, chain B [Shigella flexneri 2930-71]
 gi|333006981|gb|EGK26476.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-218]
 gi|333021020|gb|EGK40278.1| dimethylsulfoxide reductase, chain B [Shigella flexneri K-304]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|188579717|ref|YP_001923162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179343215|gb|ACB78627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 665

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + +AI P  C  CG C   CP  A      P   L  ++
Sbjct: 270 TRCLDVCPTGAIASAGDSVAIDPYICAGCGSCAAVCPTGAANYALPPADALMRRL 324



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE+C LC    CV  CP     +  +   LA     C+ CG+C   CP D I        
Sbjct: 507 TEDCTLCL--SCVGACPTHALTDSADRPLLAFEESLCVQCGLCAATCPEDVIDLTPRIDF 564

Query: 64  ELWLK 68
           E W  
Sbjct: 565 EAWAA 569


>gi|160886568|ref|ZP_02067571.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
 gi|156108453|gb|EDO10198.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|120009|sp|P00201|FER_MEGEL RecName: Full=Ferredoxin
 gi|229468|prf||732190A ferredoxin
          Length = 54

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +V+++ C+ C    C   CP     EGE    +  D CIDCG CE  CP  AI  +
Sbjct: 2  HVISDECVKCG--ACASTCPTGAIEEGETKYVVT-DSCIDCGACEAVCPTGAISAE 54


>gi|310657519|ref|YP_003935240.1| thiamine pyrophosphate protein domain-containing protein
           [Clostridium sticklandii DSM 519]
 gi|308824297|emb|CBH20335.1| Thiamine pyrophosphate protein domain protein TPP-binding
           [Clostridium sticklandii]
          Length = 593

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CI CK   C+   CP   F +     +I PD C+ C VC   CPV AI
Sbjct: 538 VDTDKCIGCK--ACIRTGCPAISFDKDNKKSSISPDSCVGCEVCLQVCPVKAI 588


>gi|261367343|ref|ZP_05980226.1| Fe-hydrogenase large subunit family protein [Subdoligranulum
           variabile DSM 15176]
 gi|282570103|gb|EFB75638.1| Fe-hydrogenase large subunit family protein [Subdoligranulum
           variabile DSM 15176]
          Length = 507

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 20/57 (35%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           VT  C  C    C EVCP            I    C+ CG C   CP  AI     P
Sbjct: 119 VTAMCQGCLAHPCQEVCPKHAISFRNGKSHIDQSLCVKCGRCVNSCPYSAIVKTERP 175



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-----------------IHPDECIDCG 44
           +++    C+ C    CV  CP     + E   A                 I  D+C+ CG
Sbjct: 147 SHIDQSLCVKCG--RCVNSCPYSAIVKTERPCAAACGMGAIHSDQYGRADIDYDKCVSCG 204

Query: 45  VCEPECPVDAI 55
           +C   CP  AI
Sbjct: 205 MCLVNCPFGAI 215


>gi|169824821|ref|YP_001692432.1| ferredoxin [Finegoldia magna ATCC 29328]
 gi|297587204|ref|ZP_06945849.1| ferredoxin [Finegoldia magna ATCC 53516]
 gi|302379640|ref|ZP_07268125.1| ferredoxin [Finegoldia magna ACS-171-V-Col3]
 gi|303234546|ref|ZP_07321183.1| ferredoxin [Finegoldia magna BVS033A4]
 gi|167831626|dbj|BAG08542.1| ferredoxin [Finegoldia magna ATCC 29328]
 gi|297575185|gb|EFH93904.1| ferredoxin [Finegoldia magna ATCC 53516]
 gi|302312547|gb|EFK94543.1| ferredoxin [Finegoldia magna ACS-171-V-Col3]
 gi|302494380|gb|EFL54149.1| ferredoxin [Finegoldia magna BVS033A4]
          Length = 56

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++++CI C    C   CPVDC  EG +   I  D CIDCG C   CPVDA   D
Sbjct: 1  MAYKISDDCIACGQ--CKPECPVDCISEG-DIYTIDQDACIDCGSCADVCPVDAPHQD 55


>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
 gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           YV+T++CI C    C + CP +    E +    I   +C+ CG C  +C   AI  +
Sbjct: 574 YVITDDCIGCGL--CKKNCPAEAINGEKKQKHVIDTTKCLKCGACMEKCKKGAIIKE 628


>gi|160939851|ref|ZP_02087198.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437285|gb|EDP15050.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 357

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V T+ CI C    C   C        E   +I   +C+ CG C   CPVDA+    + 
Sbjct: 179 PFVHTDKCIGCG--ACQRNCAHSAITVLERKASIDTSKCVGCGRCIGACPVDAVDSMCDE 236

Query: 62  GLELWLKINSEYAT 75
             ++   +N + A 
Sbjct: 237 ANDI---LNRKIAE 247


>gi|255690239|ref|ZP_05413914.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
 gi|260624258|gb|EEX47129.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCLNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|90577567|ref|ZP_01233378.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
 gi|90440653|gb|EAS65833.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
          Length = 210

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C +VCP    +  E +  + ++ D CI C  C   CP  A +   
Sbjct: 62  SYYLSISCNHCSDPACTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|288929911|ref|ZP_06423753.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
 gi|288328730|gb|EFC67319.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
          Length = 55

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV++++CI C    C+  CPV+   EG +   I  D C +CG C   CP +AI
Sbjct: 1  MAYVISDDCIACG--TCLPECPVEAISEG-DIYKIDADACTECGTCASVCPSEAI 52


>gi|237723391|ref|ZP_04553872.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447913|gb|EEO53704.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|158520198|ref|YP_001528068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509024|gb|ABW65991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C  C+   CV+ C  +     ++ L  ++PD CI CG+C   CP +A+    +   + 
Sbjct: 277 DACTGCE--TCVDRCQTNALAMDDDGLAVLNPDRCIGCGLCVITCPSEALSLQAKSPEQQ 334

Query: 66  W 66
           +
Sbjct: 335 Y 335



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 7/58 (12%)

Query: 9   CILCKHTDCV------EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C     V         P +      ++  +  D C  C  C   C  +A+  D +
Sbjct: 243 CNCCGDCCGVLQAINFHPKPAEAVS-TNHYAVLDRDACTGCETCVDRCQTNALAMDDD 299


>gi|82703818|ref|YP_413384.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|82411883|gb|ABB75992.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
          Length = 259

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CI C  T C++VCPVD        +  +   EC  C +C   CPVD I+         
Sbjct: 84  QACIGC--TVCIQVCPVDAIVGAARQMHTVISGECTGCSLCLEPCPVDCIQMVLPKEHSP 141

Query: 66  WLKINSEYA 74
             +I ++ A
Sbjct: 142 CAEIGAQIA 150



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C VC   CPVDAI
Sbjct: 81  IDEQACIGCTVCIQVCPVDAI 101


>gi|308049209|ref|YP_003912775.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307631399|gb|ADN75701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 182

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           T +C+ C +  C+ VCP   F   ++ L +   + C  CG+C   CP DAI  D   G
Sbjct: 58  THSCMHCGNPACLMVCPAGAFTTRDDGLVVLDRERCTSCGLCVSACPYDAIAVDPRDG 115


>gi|284048866|ref|YP_003399205.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953087|gb|ADB47890.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 504

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y++T+ C  C    C+  CP       +    I  D CI+CG C+  CP  A+     P
Sbjct: 105 YMITDVCRRCLTHRCMNGCPKKAISVYQGRAHIDYDMCIECGNCKRACPYGAVVEIARP 163



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCK--------------HTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVC 46
            ++  + CI C                  C   C V   + G+N    I  + C++CG C
Sbjct: 135 AHIDYDMCIECGNCKRACPYGAVVEIARPCENACKVHALHTGKNKKAEIDKNICVECGAC 194

Query: 47  EPECPVDAIKP 57
              CP  AI+ 
Sbjct: 195 RGACPFGAIEE 205


>gi|241759531|ref|ZP_04757634.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
 gi|241320088|gb|EER56449.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
          Length = 283

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I  D  P  + +L
Sbjct: 81  CIGC--TACIRACPVDAIMGASKLMHTVISDECTGCGLCVTPCPVDCI--DMVPVSQSFL 136

Query: 68  KINSEYAT 75
                ++T
Sbjct: 137 PSARRFST 144



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 76 IDEAICIGCTACIRACPVDAI 96



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CV  CPVDC 
Sbjct: 103 MHTVISDECTGCGL--CVTPCPVDCI 126


>gi|153809516|ref|ZP_01962184.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
 gi|149127824|gb|EDM19047.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  + CI CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHETCISCGICHKSCPYHAIVY 169



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           E CI C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 ETCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|51891249|ref|YP_073940.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
 gi|51854938|dbj|BAD39096.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Symbiobacterium thermophilum IAM 14863]
          Length = 237

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            VT  C+ C    C  VCP    Y+  +    I  + CI C  C   CP +A   D    
Sbjct: 53  FVTTQCLHCDDPPCAAVCPTGATYKTADGPVKIDDENCIGCQYCMTACPYEARTYDAAAD 112


>gi|24112270|ref|NP_706780.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 301]
 gi|33301071|sp|Q83RZ7|DMSB_SHIFL RecName: Full=Anaerobic dimethyl sulfoxide reductase chain B;
           AltName: Full=DMSO reductase iron-sulfur subunit
 gi|24051122|gb|AAN42487.1| anaerobic dimethyl sulfoxide reductase subunit B [Shigella flexneri
           2a str. 301]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|260173332|ref|ZP_05759744.1| putative hydrogenase [Bacteroides sp. D2]
 gi|315921605|ref|ZP_07917845.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695480|gb|EFS32315.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|295106606|emb|CBL04149.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 215

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            Y ++  C  C    C  VCP    ++ +  L      +CI CG C   CP  A   D
Sbjct: 67  AYHLSLACNHCGDPACTRVCPTGAMHKDDRGLVWPDERKCIGCGYCTMACPYHAPFID 124


>gi|293373213|ref|ZP_06619575.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631861|gb|EFF50477.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 489

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|269928392|ref|YP_003320713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787749|gb|ACZ39891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 290

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++ C  C +  C+E CP       E + + +  D C  CG C P CP   I  D 
Sbjct: 102 SDVCKHCVNAGCMEACPTGAIIRTEFDTVVVQQDVCNGCGYCVPACPFGVIALDL 156


>gi|227825061|ref|ZP_03989893.1| hydrogenase large subunit [Acidaminococcus sp. D21]
 gi|226905560|gb|EEH91478.1| hydrogenase large subunit [Acidaminococcus sp. D21]
          Length = 501

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y++T+ C  C    C+  CP       +    I  D C++CG C+  CP  A+   + P
Sbjct: 105 YMITDVCRRCLTHRCMNGCPKKAISVYQGRAHIDYDVCVECGNCKRACPYGAVVEISRP 163



 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 19/73 (26%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-----------------GENFLAIHPDECIDCG 44
            ++  + C+ C   +C   CP     E                  +    I  + C++CG
Sbjct: 135 AHIDYDVCVECG--NCKRACPYGAVVEISRPCENACKVHALHMGADKKAEIDKNVCVECG 192

Query: 45  VCEPECPVDAIKP 57
            C   CP  AI+ 
Sbjct: 193 ACRGACPFGAIEE 205


>gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C  T C +VCPV+C       +  I    CI CG C  +C  DAI
Sbjct: 433 VVDQKCVGC--TLCAKVCPVNCISGKPKEVHVIDQAACIKCGACLDKCKFDAI 483


>gi|303257325|ref|ZP_07343339.1| dimethylsulfoxide reductase, chain B [Burkholderiales bacterium
           1_1_47]
 gi|302860816|gb|EFL83893.1| dimethylsulfoxide reductase, chain B [Burkholderiales bacterium
           1_1_47]
          Length = 201

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y V+  C  C    CV+VCP    +   E+ L  I   +CI CG+C   CP  A   D 
Sbjct: 61  YYVSLGCNHCSDPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACPYYAPVLDE 119


>gi|255067816|ref|ZP_05319671.1| ferredoxin [Neisseria sicca ATCC 29256]
 gi|255047907|gb|EET43371.1| ferredoxin [Neisseria sicca ATCC 29256]
          Length = 130

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
           M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 48  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 105

Query: 55  IKPDTEPGLEL 65
           I  D E     
Sbjct: 106 ILIDEEHPETH 116



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/32 (53%), Positives = 19/32 (59%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          G+       DECI+C VCEPECP DAI    E
Sbjct: 45 GKEMSLFITDECINCDVCEPECPNDAISQGEE 76


>gi|160934322|ref|ZP_02081709.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
 gi|156866995|gb|EDO60367.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
          Length = 368

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV+ E C+ C    C + C  D     +    I+   C  CG C   C  DAIKP  + 
Sbjct: 190 PYVIQEQCVGC--RVCAKSCAHDAISFTDKKANINHSLCAGCGRCIGVCHRDAIKPADDE 247

Query: 62  GLELWLKINSEYATQWPNITTKKE 85
             ++   +N + A     +  K+ 
Sbjct: 248 SFDI---LNQKVAEYTKAVVDKRP 268


>gi|29347244|ref|NP_810747.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339143|gb|AAO76941.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 107 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 162



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 143 DTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNACP 202

Query: 52  VDAIKP 57
             AI  
Sbjct: 203 FGAIFE 208


>gi|317491443|ref|ZP_07949879.1| dimethylsulfoxide reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920990|gb|EFV42313.1| dimethylsulfoxide reductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCSDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNEE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|160943469|ref|ZP_02090702.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445148|gb|EDP22151.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103736|emb|CBL01280.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Faecalibacterium prausnitzii SL3/3]
          Length = 56

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCG--ACEGACPVGAITIENGAAVVNADSCIDCGACEGACPTGAIAAE 56


>gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           VV + C+ C  T C +VCPV+C       +  I    CI CG C  +C  DAI
Sbjct: 433 VVDQKCVGC--TLCAKVCPVNCISGKPKEVHVIDQAACIKCGACLDKCKFDAI 483


>gi|170290379|ref|YP_001737195.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174459|gb|ACB07512.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 648

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +E C  C    CVE CP       E    + P  C+ CG+C+  CP  AI+
Sbjct: 577 VNSELCTGCG--ACVEECPFSAIVLEEGKAKVLPLACMGCGICQGACPTGAIE 627



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 25/76 (32%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECI--- 41
           YV  + C+ C    C E CPV+   E                        I  + C+   
Sbjct: 237 YVDQDKCVACG--ICAESCPVEVLNEWYARLGKRKAAYIPFPQSVPRAYVIDRENCLFFR 294

Query: 42  --DCGVCEPECPVDAI 55
              C  CE  CP  AI
Sbjct: 295 DGSCRKCEEVCPAKAI 310



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
                 ++ + C  CG C  ECP  AI  + 
Sbjct: 571 TGEKAKVNSELCTGCGACVEECPFSAIVLEE 601


>gi|188585282|ref|YP_001916827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349969|gb|ACB84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 229

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPD 58
           TY+ T  C  C H  CVEVCP D    Y+ E+ L +H   ECI C  CE  CP   +  +
Sbjct: 52  TYIPT-LCNHCDHAPCVEVCPTDPKAMYKTEHGLTLHDSKECIGCRQCEDACPYGVVYFN 110

Query: 59  TEPGLELW 66
           +E   E W
Sbjct: 111 SEKAHEFW 118


>gi|224368236|ref|YP_002602399.1| IorA1 [Desulfobacterium autotrophicum HRM2]
 gi|223690952|gb|ACN14235.1| IorA1 [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + VT+ C    H DC++   CP     EG   + I P+ C+ C +C   CP +AI P
Sbjct: 560 AFTVTDRCKN--HRDCMDSIACPSFFIEEG--RVKIDPNTCVGCALCAQICPENAIVP 613


>gi|126459791|ref|YP_001056069.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249512|gb|ABO08603.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum calidifontis JCM 11548]
          Length = 593

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V  + C+ C    C  V       +       I P  C+ CGVC   CPV AIK +   
Sbjct: 526 FVDVDKCVSCG--ICYNVLKCSAISKASGGKAYIDPALCVGCGVCAEVCPVGAIKGE--G 581

Query: 62  GLELWLKI 69
               WL++
Sbjct: 582 DRAKWLEV 589


>gi|26246921|ref|NP_752961.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           CFT073]
 gi|110641095|ref|YP_668825.1| anaerobic dimethyl sulfoxide reductase, subunit B [Escherichia coli
           536]
 gi|191172116|ref|ZP_03033660.1| dimethylsulfoxide reductase, B subunit [Escherichia coli F11]
 gi|227884138|ref|ZP_04001943.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           83972]
 gi|300978541|ref|ZP_07174294.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 45-1]
 gi|300983194|ref|ZP_07176473.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 200-1]
 gi|301047846|ref|ZP_07194896.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 185-1]
 gi|26107321|gb|AAN79504.1|AE016758_108 Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           CFT073]
 gi|110342687|gb|ABG68924.1| anaerobic dimethyl sulfoxide reductase, subunit B [Escherichia coli
           536]
 gi|190907643|gb|EDV67238.1| dimethylsulfoxide reductase, B subunit [Escherichia coli F11]
 gi|227838890|gb|EEJ49356.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           83972]
 gi|300300274|gb|EFJ56659.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 185-1]
 gi|300306958|gb|EFJ61478.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 200-1]
 gi|300409620|gb|EFJ93158.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 45-1]
 gi|307552737|gb|ADN45512.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           ABU 83972]
 gi|315291254|gb|EFU50614.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 153-1]
 gi|324012985|gb|EGB82204.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 60-1]
          Length = 205

 Score = 59.4 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAT 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|318604458|emb|CBY25956.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 204

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C    C +VCP    ++ ++ F+ +  D CI C  C   CP  A + D  
Sbjct: 59  AYYLSIACNHCSDPTCTKVCPTGAMHKRDDGFVVVSEDICIGCRYCHMACPYGAPQYDEA 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|331651914|ref|ZP_08352933.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|331050192|gb|EGI22250.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|170680702|ref|YP_001744275.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
 gi|170518420|gb|ACB16598.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PG 62
            G
Sbjct: 120 KG 121


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  C    CV +CPV+       +    I  + CI CG C  +CP   I  + E
Sbjct: 853 EKCRRCGL--CVRLCPVEAISGEVRKRPFVIDKNRCIACGACAQKCPAKCIAREEE 906



 Score = 40.1 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 21  CPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CP         +    I  ++C  CG+C   CPV+AI  +  
Sbjct: 834 CPAGVCAALRPKGKFRIDEEKCRRCGLCVRLCPVEAISGEVR 875


>gi|120022|sp|P00194|FER1_RHORU RecName: Full=Ferredoxin-1; AltName: Full=Ferredoxin I; Short=FdI
 gi|351273|prf||0905209A ferredoxin
          Length = 55

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + E CI C    C   CPV+   +G+    ++ D CIDCG C   CPV A   +
Sbjct: 1  AYKIEETCISCG--ACAAECPVNAIEQGDTIFVVNADTCIDCGNCANVCPVGAPVAE 55



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDT 59
              + CI CG C  ECPV+AI+   
Sbjct: 2  YKIEETCISCGACAAECPVNAIEQGD 27


>gi|328948664|ref|YP_004366001.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema succinifaciens DSM 2489]
 gi|328448988|gb|AEB14704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema succinifaciens DSM 2489]
          Length = 56

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y ++ +CI C    C   CP +   E  +   I+ D C+ CG C   CPV AI  +
Sbjct: 1  MAYKISSDCINCG--ACEGECPSEAISEVNDKRQINADNCVSCGSCASVCPVGAISEE 56


>gi|322835428|ref|YP_004215454.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
 gi|321170629|gb|ADW76327.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
          Length = 206

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  CK   C + CP    +   G+  + ++ D+C+ CG C   CP  A + +T
Sbjct: 71  AYTLSISCNHCKDPVCTKNCPTTAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQLNT 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|298480728|ref|ZP_06998924.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
 gi|298273162|gb|EFI14727.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
          Length = 489

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|239626612|ref|ZP_04669643.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239516758|gb|EEQ56624.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 367

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV T+ C+ C    C + C        +   +I   +C+ CG C   CPVDA+
Sbjct: 189 PYVHTDMCVGCG--SCQKNCAHSAITITDRKASIDVKKCVGCGRCIGACPVDAV 240


>gi|20807368|ref|NP_622539.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|254478276|ref|ZP_05091656.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum
          DSM 12653]
 gi|20515886|gb|AAM24143.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|214035741|gb|EEB76435.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum
          DSM 12653]
          Length = 431

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 1  MTYV--VT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          MTY   VT   + C  C  T+C++ CP +     E    I  + CIDCG C   CP  A
Sbjct: 1  MTYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVREGKARIINERCIDCGECIRVCPYHA 57


>gi|320449774|ref|YP_004201870.1| NrfC protein [Thermus scotoductus SA-01]
 gi|320149943|gb|ADW21321.1| NrfC protein [Thermus scotoductus SA-01]
          Length = 195

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           E C+ C+ + CV VCP    Y+ +  L  + P +CI CG C   CP DA
Sbjct: 56  EQCLHCETSPCVPVCPTGASYQTQEGLVLVDPKKCIACGACIAACPYDA 104


>gi|317488877|ref|ZP_07947407.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832690|ref|ZP_08165453.1| putative electron transport protein HydN [Eggerthella sp. HGA1]
 gi|316911951|gb|EFV33530.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485829|gb|EGC88290.1| putative electron transport protein HydN [Eggerthella sp. HGA1]
          Length = 207

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP  C +  +  + +HPD+CI C  C   CP  A++  TE
Sbjct: 52  CHHCAEAPCVDACPTGCLFTDDEHVGVHPDKCIGCRNCVLACPYGAVEIVTE 103


>gi|206901010|ref|YP_002251422.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740113|gb|ACI19171.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 369

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C    CV  CP            +  PD CI CG C   CP  AIK          +
Sbjct: 195 CIGC--RRCVTHCPTGALEMVNKKSVLTRPDLCIGCGECAVVCPTSAIKILWNESA---I 249

Query: 68  KINSEYATQWPNITTKKES 86
            +  + A     I  +KE 
Sbjct: 250 GLQEKMAEFTYGILKQKEP 268



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 36  HPDECIDCGVCEPECPVDAIK 56
           +P+ CI C  C   CP  A++
Sbjct: 191 NPNLCIGCRRCVTHCPTGALE 211


>gi|303258350|ref|ZP_07344353.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302858796|gb|EFL81884.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 213

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C++  C++VCPV   Y G +    I   +CI C  C   CP  A K         +
Sbjct: 55  SCMHCENPACMKVCPVKAVYFGPHGEVLIDQKKCIGCKGCLAACPYSAPKFSDPNKQSYF 114

Query: 67  LKI 69
             +
Sbjct: 115 GDL 117


>gi|90410731|ref|ZP_01218746.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK]
 gi|90328362|gb|EAS44660.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK]
          Length = 204

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C +VCPV    +  + + ++   CI C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCAKVCPVQAITKEGDRVLLNETLCIGCTLCAVACPFGAIAFD 100


>gi|46203868|ref|ZP_00050860.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 153

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           V+  C+ C    C  VCPV+CFY   + + +H  D CI  G C   CP  A
Sbjct: 51  VSMACMHCTDAPCAAVCPVNCFYTTADAVVLHSKDICIGFGYCFYACPFGA 101


>gi|126698471|ref|YP_001087368.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|255100006|ref|ZP_05328983.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305893|ref|ZP_05350065.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|115249908|emb|CAJ67727.1| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 498

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C E C             I+ D C  CG+C+  C  DAI     P
Sbjct: 107 FTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAISEVVRP 165



 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCK--------------HTDCVEVCPVDC--FYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP     F        IH D CI+CG 
Sbjct: 137 AYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGA 196

Query: 46  CEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI  K    P  +   K  + YA   P IT + +S
Sbjct: 197 CMSACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDS 239


>gi|254974516|ref|ZP_05270988.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255313641|ref|ZP_05355224.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516325|ref|ZP_05384001.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649424|ref|ZP_05396326.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|260682592|ref|YP_003213877.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686192|ref|YP_003217325.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|306519505|ref|ZP_07405852.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|260208755|emb|CBA61611.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212208|emb|CBE02900.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 498

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C E C             I+ D C  CG+C+  C  DAI     P
Sbjct: 107 FTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAISEVVRP 165



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCK--------------HTDCVEVCPVDC--FYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP     F        IH D CI+CG 
Sbjct: 137 AYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGA 196

Query: 46  CEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI  K    P  +   K  + YA   P IT + +S
Sbjct: 197 CISACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDS 239


>gi|56696676|ref|YP_167037.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678413|gb|AAV95079.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 649

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             C  ++C+++CP        + +AI P  C  CG C   CP  AI  +  
Sbjct: 276 RGC--SNCLDICPTGAITSAGDHVAIDPMVCAGCGACAALCPSTAITYEAP 324



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV +CP     +  +   L    D C+ CG+C   CP  AI
Sbjct: 496 VNTDACTLCL--SCVSLCPSGALIDNPDLPQLNFQEDACLQCGICRTICPEQAI 547


>gi|269121613|ref|YP_003309790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
          termitidis ATCC 33386]
 gi|268615491|gb|ACZ09859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
          termitidis ATCC 33386]
          Length = 57

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +  E CI C    C  VCPV+   E +   AI    CIDCG CE  CPV+AI  +
Sbjct: 1  MAYSINKETCIACG--ACEGVCPVEAIAEADGKYAIDGATCIDCGACEGVCPVEAISGE 57


>gi|89896497|ref|YP_519984.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89335945|dbj|BAE85540.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 187

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP    ++ +N L  ++ D CI C  C   CP DA + DTE
Sbjct: 67  CNHCADPACVKNCPTGAMHKDDNGLVSVNQDVCIGCKYCVWTCPYDAPEFDTE 119


>gi|317490354|ref|ZP_07948838.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316910489|gb|EFV32114.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 193

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
          V   C+ C+   CV+ CP       ++ +  I  ++CI CG+C   CP  A
Sbjct: 31 VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGA 81


>gi|283833194|ref|ZP_06352935.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291070827|gb|EFE08936.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|260913682|ref|ZP_05920158.1| hydrogenase-4 component A [Pasteurella dagmatis ATCC 43325]
 gi|260632221|gb|EEX50396.1| hydrogenase-4 component A [Pasteurella dagmatis ATCC 43325]
          Length = 200

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C    C  VCPV+   + +  + ++   CI C +C   CP  AI P
Sbjct: 51 CHHCDDAPCATVCPVNAIKQVDRTIQLNESLCIGCKLCAIACPFGAITP 99


>gi|157145832|ref|YP_001453151.1| hypothetical protein CKO_01583 [Citrobacter koseri ATCC BAA-895]
 gi|157083037|gb|ABV12715.1| hypothetical protein CKO_01583 [Citrobacter koseri ATCC BAA-895]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|89072806|ref|ZP_01159363.1| anaerobic dimethyl sulfoxide reductase, subunit B [Photobacterium
           sp. SKA34]
 gi|89051328|gb|EAR56783.1| anaerobic dimethyl sulfoxide reductase, subunit B [Photobacterium
           sp. SKA34]
          Length = 210

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C +VCP    +  E +  + ++ D CI C  C   CP  A +   
Sbjct: 62  SYYLSISCNHCSDPACTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|215486024|ref|YP_002328455.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312969037|ref|ZP_07783244.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
 gi|215264096|emb|CAS08439.1| dimethyl sulfoxide reductase, anaerobic, subunit B [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312286439|gb|EFR14352.1| dimethylsulfoxide reductase, chain B [Escherichia coli 2362-75]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQFNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|152991176|ref|YP_001356898.1| molybdopterin oxidoreductase, iron sulfur subunit [Nitratiruptor
           sp. SB155-2]
 gi|151423037|dbj|BAF70541.1| molybdopterin oxidoreductase, iron sulfur subunit [Nitratiruptor
           sp. SB155-2]
          Length = 519

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +C  C    C++ CP + + + EN + IH DE CI C  C   CP D      E
Sbjct: 87  SCNHCIDPACLKGCPTNSYIKIENGIVIHDDEACIGCQYCTWNCPYDVPVFHEE 140


>gi|148263632|ref|YP_001230338.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146397132|gb|ABQ25765.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 431

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 7   ENCILCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C  C    CV  CPV         D          I  + C+ CGVC   CPV AI+ 
Sbjct: 290 DRCNGCG--RCVAACPVAVAELITANDPLNPARKKARIDRENCLGCGVCVRSCPVAAIRL 347

Query: 58  DTEP 61
           ++ P
Sbjct: 348 ESRP 351


>gi|317491979|ref|ZP_07950412.1| glutamate synthase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920004|gb|EFV41330.1| glutamate synthase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 687

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   C  VCP     + ++ + +  ++CI C  C   CP  A++  T P 
Sbjct: 56  CRHCEDAPCANVCPNHAIEKRDDSIQVIQEKCIGCKTCVVACPFGAMEVITHPA 109



 Score = 36.3 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 17/68 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--------YEG-ENFLAIHPDECIDCG------VCEP 48
           V+ E CI CK   CV  CP             E   + +  +  +C  C        C  
Sbjct: 82  VIQEKCIGCK--TCVVACPFGAMEVITHPAPSETQPDGVFANAHKCDLCAGVADEPSCVA 139

Query: 49  ECPVDAIK 56
            CP +A+K
Sbjct: 140 SCPSNALK 147


>gi|281357693|ref|ZP_06244180.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
 gi|281315950|gb|EFA99976.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
          Length = 269

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +E CI C    C++ CP      GE    +  D+CI+CG C   CP +AI
Sbjct: 10 SEACIRCGF--CIDDCPTCVLEMGEAGPQVREDQCIECGHCVSVCPTEAI 57


>gi|237713804|ref|ZP_04544285.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409289|ref|ZP_06085832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644700|ref|ZP_06722449.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805939|ref|ZP_06764806.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446251|gb|EEO52042.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352741|gb|EEZ01838.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639963|gb|EFF58232.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446821|gb|EFG15421.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295085089|emb|CBK66612.1| Iron only hydrogenase large subunit, C-terminal domain [Bacteroides
           xylanisolvens XB1A]
          Length = 489

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP D     +N    I  D C+ CG+C   CP  AI  
Sbjct: 114 YEITNLCRGCVARSCYMNCPKDAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVY 169



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C+ C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 150 DTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMNACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|188025593|ref|ZP_02959171.2| hypothetical protein PROSTU_00970 [Providencia stuartii ATCC 25827]
 gi|188022949|gb|EDU60989.1| hypothetical protein PROSTU_00970 [Providencia stuartii ATCC 25827]
          Length = 208

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C +VCP    ++ E+ F+ +  + CI C  C   CP  A + D 
Sbjct: 63  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEEVCIGCRYCSMACPYGAPQFDE 121


>gi|313681768|ref|YP_004059506.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154628|gb|ADR33306.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 211

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C +  C  +CPV   +  EN +  I  + CI C  C   CP  AI  D
Sbjct: 57  CNHCANAPCERICPVSALHYIENGIVNIDKERCIGCAGCVMACPYGAIYID 107



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 24/72 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPV 52
           E CI C    CV  CP            I P     D+C  C           C   CPV
Sbjct: 87  ERCIGCAG--CVMACPYGAI-------YIDPQTQTADKCTYCAHRVASAMMPSCVVACPV 137

Query: 53  DA-IKPDTEPGL 63
           +A I  D +  +
Sbjct: 138 EANIFGDLDDPM 149


>gi|302342304|ref|YP_003806833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301638917|gb|ADK84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 352

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            E C++C    C + C +D F  G++ + ++ D CI CG+C   CP +A+K    P  
Sbjct: 274 AEACVMCGL--CEDRCQMDVFSPGDDAMILNMDRCIGCGLCVTTCPSEALKLVRRPDD 329


>gi|158522308|ref|YP_001530178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511134|gb|ABW68101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 378

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T+ CI C    CV  C         EGE    I+ ++C+ CG C   CP  +++    
Sbjct: 197 VKTKTCIGCGD--CVAHCAHGAIRLVKEGEKKALINEEKCVGCGECIVVCPTGSVQIQWN 254

Query: 61  PGLELWLKINSEY 73
                +L+   EY
Sbjct: 255 QAGPAFLEKMVEY 267


>gi|328951909|ref|YP_004369243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452233|gb|AEB08062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 181

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   CV VCP    Y  E + A+    CI C +C   CP  AI 
Sbjct: 64  CRQCQDAPCVRVCPTGATYRTETYTAVDQARCIGCRLCMMVCPFGAIH 111


>gi|296533711|ref|ZP_06896262.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296265958|gb|EFH12032.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 666

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+++CP      G+  + I  + C  CG C   CP  A + D  P  
Sbjct: 285 TRCLDLCPTGAITPGKESVQISAEICAGCGACAAICPTGAAQYDLPPTD 333



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    C  VCP   F    +   L+   D C+ CG+C   CP   I
Sbjct: 513 VAVEGCTLCL--ACTMVCPTGAFAANPDRPELSFLEDACVQCGLCATTCPEKVI 564


>gi|227486762|ref|ZP_03917078.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
 gi|227235232|gb|EEI85247.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
          Length = 57

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y + EN CI C    C   CPV    +G+    I  + CIDCG C   CPV+AI  +
Sbjct: 1  MAYKIDENTCISCG--SCEGECPVGAISQGDAAYEIDANACIDCGSCSAVCPVEAIDQE 57


>gi|212709896|ref|ZP_03318024.1| hypothetical protein PROVALCAL_00945 [Providencia alcalifaciens DSM
           30120]
 gi|212687707|gb|EEB47235.1| hypothetical protein PROVALCAL_00945 [Providencia alcalifaciens DSM
           30120]
          Length = 252

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+ +  I  + C+ C  C   CP DA
Sbjct: 107 CNHCDNPPCVPVCPVQATFQREDGIVVIDNERCVGCAYCVQACPYDA 153


>gi|254430471|ref|ZP_05044174.1| 4Fe-4S binding domain protein [Cyanobium sp. PCC 7001]
 gi|197624924|gb|EDY37483.1| 4Fe-4S binding domain protein [Cyanobium sp. PCC 7001]
          Length = 74

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPV 52
          M + +VT  C      DCV+ CPV C + G+        F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTNVCEGV--ADCVDACPVACIHPGQGANSKGTGFYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+ +P L+ 
Sbjct: 59 EGAILPEEKPELQK 72


>gi|318041465|ref|ZP_07973421.1| ferredoxin [Synechococcus sp. CB0101]
          Length = 74

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C   G         F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGV--ADCVDACPVACINPGSGANAKGTGFYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + AI P+ +P L+
Sbjct: 59 EGAIVPEEKPDLQ 71


>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 629

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++++ E C  C  + C   CP D      +    I  D+CI CG CE  C   AI  +
Sbjct: 573 FIISPERCKGC--SKCARNCPADAISGRIKEPYVIDNDKCIKCGACESACAFGAIHIE 628



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I P+ C  C  C   CP DAI
Sbjct: 571 RRFIISPERCKGCSKCARNCPADAI 595


>gi|323190717|gb|EFZ75986.1| dimethylsulfoxide reductase, chain B [Escherichia coli RN587/1]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQFNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
 gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
          Length = 629

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++++ E C  C  + C   CP D      +    I  D+CI CG CE  C   AI  +
Sbjct: 573 FIISPERCKGC--SKCARNCPADAISGRIKEPYVIDNDKCIKCGACESACAFGAIHIE 628



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I P+ C  C  C   CP DAI
Sbjct: 571 RRFIISPERCKGCSKCARNCPADAI 595


>gi|219667648|ref|YP_002458083.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537908|gb|ACL19647.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 187

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV+ CP    ++ +N L  ++ D CI C  C   CP DA + DTE
Sbjct: 67  CNHCADPACVKNCPTGAMHKDDNGLVSVNQDVCIGCKYCVWTCPYDAPEFDTE 119


>gi|297516480|ref|ZP_06934866.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
          OP50]
          Length = 161

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 16 AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 75

Query: 61 PGL 63
           G 
Sbjct: 76 KGH 78


>gi|150006371|ref|YP_001301115.1| ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254881723|ref|ZP_05254433.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294776232|ref|ZP_06741717.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643688|ref|ZP_07998305.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
 gi|149934795|gb|ABR41493.1| electron transport complex protein RnfB [Bacteroides vulgatus ATCC
           8482]
 gi|254834516|gb|EET14825.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294449915|gb|EFG18430.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317384718|gb|EFV65680.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
          Length = 317

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KINSEYATQWPN--ITTKKESLPSAAKMDGVKQKYE 101
           ++ +  A   P   +   K   P A  +     K E
Sbjct: 281 EVPAGEAAAKPAVKVEASKVETPKAEAVKAEAPKTE 316



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVE C  D  +         +  ++C  CG C   CP   I+
Sbjct: 145 CLGCGD--CVEACQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKIIE 192


>gi|78776698|ref|YP_393013.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497238|gb|ABB43778.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
          Length = 212

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  C  +CPV   +  EN +  I  + CI C  C   CP  AI  D
Sbjct: 57  CNHCENAPCERICPVSALHYLENGIVNIDKERCIGCSGCVMACPYGAIYID 107



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 24/71 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPV 52
           E CI C    CV  CP            I P     D+C  C           C   CPV
Sbjct: 87  ERCIGCSG--CVMACPYGAI-------YIDPQTQTADKCTYCAHRVASSMMPACVVACPV 137

Query: 53  DA-IKPDTEPG 62
            A I  D E  
Sbjct: 138 QANIFGDLEDP 148


>gi|15668438|ref|NP_247236.1| carbon monoxide dehydrogenase iron sulfur subunit CooF1
          [Methanocaldococcus jannaschii DSM 2661]
 gi|2494449|sp|Q57712|Y264_METJA RecName: Full=Uncharacterized protein MJ0264
 gi|1592278|gb|AAB98251.1| carbon monoxide dehydrogenase, iron sulfur subunit CooF-1 (cooF1)
          [Methanocaldococcus jannaschii DSM 2661]
          Length = 153

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C+  CP +      N + +  D+C+ CG+C   CP  AI+ D
Sbjct: 49 CMHCDRNPCLYACPENAIERINNKVVVIKDKCVGCGLCALACPFGAIRID 98


>gi|330999837|ref|ZP_08323541.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
 gi|329573608|gb|EGG55201.1| dimethylsulfoxide reductase, chain B [Parasutterella
           excrementihominis YIT 11859]
          Length = 201

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y V+  C  C    CV+VCP    +   E+ L  I   +CI CG+C   CP  A   D 
Sbjct: 61  YYVSLGCNHCSGPACVKVCPTKAHHKRAEDGLVVIDATKCIGCGLCAQACPYHAPVLDE 119


>gi|309784012|ref|ZP_07678656.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
 gi|308928155|gb|EFP73618.1| dimethylsulfoxide reductase, chain B [Shigella dysenteriae 1617]
          Length = 152

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 31 AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 90

Query: 61 PGL 63
           G 
Sbjct: 91 KGH 93


>gi|238795930|ref|ZP_04639442.1| hypothetical protein ymoll0001_23270 [Yersinia mollaretii ATCC
           43969]
 gi|238720135|gb|EEQ11939.1| hypothetical protein ymoll0001_23270 [Yersinia mollaretii ATCC
           43969]
          Length = 533

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    Y  +    I   PD C+ C  C   CP 
Sbjct: 80  SCQHCDHAPCVDVCPTGASYRDKATGIIDVNPDLCVGCQYCIAACPY 126


>gi|182417446|ref|ZP_02948773.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium butyricum 5521]
 gi|237665843|ref|ZP_04525831.1| 4Fe-4S binding domain protein [Clostridium butyricum E4 str. BoNT
          E BL5262]
 gi|182378615|gb|EDT76142.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium butyricum 5521]
 gi|237658790|gb|EEP56342.1| nitroreductase family protein [Clostridium butyricum E4 str. BoNT
          E BL5262]
          Length = 278

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  + CI C  + CV+ CPV      +N   I+ + C+ CG C   CPV+A+  D 
Sbjct: 1  MFKVNKDKCIGC--SQCVKDCPVRVISLIDNKAEINNNNCMKCGHCIAICPVNAVSTDD 57


>gi|146311076|ref|YP_001176150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Enterobacter sp. 638]
 gi|145317952|gb|ABP60099.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|91975987|ref|YP_568646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB5]
 gi|91682443|gb|ABE38745.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
            C+ C +  CVEVCP       E+ L  I  D CI C  C   CP DA   + +P
Sbjct: 58  ACMHCANPPCVEVCPTTATRRREDGLVTIDYDICIGCANCIMACPYDARSIEHQP 112


>gi|323669543|gb|ABI30020.2| CarE [Acetobacterium woodii]
          Length = 396

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ E CI C  + C + CP D     EN +A+  D C +CG C   CP +AI  +
Sbjct: 5  VIEEKCIGC--SKCQKSCPFDAITI-ENKIAVIGDACTNCGTCIDVCPTEAILQE 56


>gi|189467136|ref|ZP_03015921.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
 gi|189435400|gb|EDV04385.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
          Length = 486

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP    +  E     I  DECI CG+C   CP  AI  
Sbjct: 116 YEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDECISCGICHKSCPYHAIVY 171



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + +  +  I   +CI CG C   CP
Sbjct: 152 DECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKCLNACP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAIFE 217


>gi|21226158|ref|NP_632080.1| heterodisulfate reductase subunit A [Methanosarcina mazei Go1]
 gi|41017211|sp|Q8Q0T0|HDRA_METMA RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|20904385|gb|AAM29752.1| Heterodisulfate reductase, subunit A [Methanosarcina mazei Go1]
          Length = 793

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V  + CI C    CVEVC        +    +    C  CG C   CPV AI+
Sbjct: 573 AHVDPDKCIGC--RTCVEVCKFGKISIVDKKAVVDEVSCYGCGDCSAACPVGAIQ 625



 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 19/84 (22%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYE-----GENFLAIHPDECIDCG 44
           +V+ + C  C    C EVCPV+               Y          + I PD C+ CG
Sbjct: 237 FVLEDKCKGCVDL-CSEVCPVEIENPMNYGIGKSRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
           +C+  CP +A+  + +P    +  
Sbjct: 296 LCQLACPAEAVDYEQKPEEIEFEA 319


>gi|332295312|ref|YP_004437235.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178415|gb|AEE14104.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 573

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
            +V+ E C  CK   C   CP +             +I+P  C  CG C P+CP DA++
Sbjct: 496 AHVIEEKCTGCKL--CENSCPYEAISFVNRNDKVIASINPAICKGCGGCVPDCPEDALE 552


>gi|224535649|ref|ZP_03676188.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522722|gb|EEF91827.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 486

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP    +  E     I  DECI CG+C   CP  AI  
Sbjct: 116 YEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDECISCGICHKSCPYHAIVY 171



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + +  +  I   +CI CG C   CP
Sbjct: 152 DECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKCLNACP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAIFE 217


>gi|212634958|ref|YP_002311483.1| Fe-S-cluster-containing hydrogenase components 1 [Shewanella
           piezotolerans WP3]
 gi|212556442|gb|ACJ28896.1| Fe-S-cluster-containing hydrogenase components 1 [Shewanella
           piezotolerans WP3]
          Length = 231

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           V   C  C +  CV+VCP +  Y  E +  + I  DECI C +C   CP  A
Sbjct: 84  VPNQCNQCDNPPCVDVCPAEATYKREEDGIVVIDHDECIHCQLCVDACPYGA 135


>gi|197287384|ref|YP_002153256.1| electron transport protein [Proteus mirabilis HI4320]
 gi|194684871|emb|CAR47013.1| electron transport protein [Proteus mirabilis HI4320]
          Length = 185

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +++  +  D+CI C  C   CP   ++  + P +     
Sbjct: 62  CHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACPYGTMEVVSRPVMRKLTA 121

Query: 69  IN 70
           +N
Sbjct: 122 LN 123


>gi|114567339|ref|YP_754493.1| formate dehydrogenase subunit beta [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338274|gb|ABI69122.1| formate dehydrogenase beta subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 270

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C++ C  +  Y+ E     I  D+CI CG C   CP    K D 
Sbjct: 74  CFHCGDPACMKACSSNAIYKTETGYTLIDKDKCIGCGYCAANCPWGVPKIDE 125


>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
          Length = 596

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+           I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKACG--ICAKNCPVNAISGKPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 46.3 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I PD+C  CG+C   CPV+AI
Sbjct: 530 CPAG-VCQALLRFYIDPDKCKACGICAKNCPVNAI 563


>gi|269139711|ref|YP_003296412.1| hydrogenase 2 protein [Edwardsiella tarda EIB202]
 gi|267985372|gb|ACY85201.1| hydrogenase 2 protein [Edwardsiella tarda EIB202]
 gi|304559580|gb|ADM42244.1| Hydrogenase-2 operon protein hybA precursor [Edwardsiella tarda
           FL6-60]
          Length = 327

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALRKDPKTGIVTYDPDVCTGCRYCMVACPFDVPKYD 164


>gi|226327475|ref|ZP_03802993.1| hypothetical protein PROPEN_01346 [Proteus penneri ATCC 35198]
 gi|225204001|gb|EEG86355.1| hypothetical protein PROPEN_01346 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    CV+ CP    ++  G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCDDPICVKNCPTTAMHKRKGDGIVMVDTDKCVGCGACAWSCPYGAPQMNP 130

Query: 60  EPGL 63
           E   
Sbjct: 131 ETKQ 134


>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
 gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
          Length = 635

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +  E+CI C    C + CP D           I+PD+CI CG+C   C   AI
Sbjct: 578 LTYTINPEHCIGC--HLCAKNCPADAISGLVRKPHVINPDKCIKCGMCMARCKFKAI 632


>gi|238920366|ref|YP_002933881.1| dimethylsulfoxide reductase, chain B, [Edwardsiella ictaluri
           93-146]
 gi|238869935|gb|ACR69646.1| dimethylsulfoxide reductase, chain B, putative [Edwardsiella
           ictaluri 93-146]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    CV+VCP    ++ E+ F+ +    CI C  C   CP  A + + +
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQYNAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|289829884|ref|ZP_06547372.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
          Length = 185

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|284921494|emb|CBG34565.1| putative anaerobic dimethyl sulfoxide reductase, Fe-S subunit
           [Escherichia coli 042]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  + CI C  C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDENVCIGCRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|197123120|ref|YP_002135071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172969|gb|ACG73942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 491

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C+   C   CP    + +    + +  D CI CG C   CP  A
Sbjct: 60  CMQCEAHPCTVDCPSGATYVDANGVVVVDADVCIGCGTCVAACPYGA 106



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V  + CI C    CV  CP    +       +  ++C  C           C   CP + 
Sbjct: 87  VDADVCIGCG--TCVAACPYGARHVDPVKNVV--EKCNLCAPFVARGERPACVETCPAEC 142


>gi|153005898|ref|YP_001380223.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029471|gb|ABS27239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 744

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   CPV   ++ +   +     +CI C  C   CP      + +
Sbjct: 78  CMHCDEPACASACPVTAIHKTKEGPVVYDESKCIGCRYCMWACPWGVPMAEWD 130


>gi|157369931|ref|YP_001477920.1| dimethylsulfoxide reductase chain B [Serratia proteamaculans 568]
 gi|157321695|gb|ABV40792.1| Dimethylsulfoxide reductase chain B [Serratia proteamaculans 568]
          Length = 205

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPTGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
 gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit
           HymB-like [Clostridium difficile]
 gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
          Length = 628

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +T++C  C  T C  VCP  C     +    I   +C+ CG C   C  +AI
Sbjct: 572 LSYFITDDCKGC--TKCSRVCPAGCITGSVKEQHTIDTSKCLKCGACIDNCTFNAI 625


>gi|328952398|ref|YP_004369732.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452722|gb|AEB08551.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1473

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             YV  + C+ C   +C+  CP     F    + + I P  C  CG C   CP  AI
Sbjct: 1403 AYVNPDACVGCL--NCLRACPYGVPEFNRELDSIVIDPASCHGCGNCCATCPAMAI 1456



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 34   AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             ++PD C+ C  C   CP    + + E  
Sbjct: 1404 YVNPDACVGCLNCLRACPYGVPEFNRELD 1432


>gi|260597862|ref|YP_003210433.1| anaerobic dimethyl sulfoxide reductase subunit B [Cronobacter
           turicensis z3032]
 gi|260217039|emb|CBA30749.1| Anaerobic dimethyl sulfoxide reductase chain B [Cronobacter
           turicensis z3032]
          Length = 209

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C   CP    +  EG+  + ++ D+C+ CG C   CP  A + +T
Sbjct: 71  AYTLSISCNHCADPICTRNCPTTAMHKREGDGIVRVNTDKCVGCGYCAWSCPYGAPQRNT 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y+  + C  C    C + CPV+           I  D+CI CG C  +CP  AI 
Sbjct: 542 YIDPDKCKACG--ICAKNCPVNAISGKPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I PD+C  CG+C   CPV+AI
Sbjct: 530 CPAG-VCQALLRFYIDPDKCKACGICAKNCPVNAI 563


>gi|227358376|ref|ZP_03842716.1| electron transport protein [Proteus mirabilis ATCC 29906]
 gi|227161412|gb|EEI46456.1| electron transport protein [Proteus mirabilis ATCC 29906]
          Length = 186

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +++  +  D+CI C  C   CP   ++  + P +     
Sbjct: 63  CHQCEDAPCANVCPNGAIIHNKDYYYVDQDKCIGCKTCVLACPYGTMEVVSRPVMRKLTA 122

Query: 69  IN 70
           +N
Sbjct: 123 LN 124


>gi|311108198|ref|YP_003981051.1| benzoyl-CoA oxygenase/reductase BoxA [Achromobacter xylosoxidans
          A8]
 gi|310762887|gb|ADP18336.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Achromobacter
          xylosoxidans A8]
          Length = 412

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+       N   + P+ C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEETCPIKAITHDSNNYVVDPEICNGCMACVPPCPTGAI 64



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+ AI  D+ 
Sbjct: 15 IDPEICIRCNTCEETCPIKAITHDSN 40


>gi|302391326|ref|YP_003827146.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203403|gb|ADL12081.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 423

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +TE C+ C    CVE CPVD    E      I P+ CI+C  C   CP +AI+ +
Sbjct: 371 ITEECVGCGV--CVEECPVDAISGEDGEIHNIDPEVCIECENCVEVCPTEAIETE 423



 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +TE C+ C    CVE CPVD    E      I P+ CI+C  C   CP DAI+       
Sbjct: 292 ITEECVGCGV--CVEECPVDAISSEDGEIHNIDPEVCIECENCVEVCPTDAIQSKEGETE 349

Query: 64  E 64
           E
Sbjct: 350 E 350



 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CI C    C   CPVD     +N   I  +ECI+CGVC   CP+D I+       
Sbjct: 218 CIGCGV--CETKCPVDAITIEDNLAVIDYEECINCGVCAEACPMDTIEAPKAKDQ 270



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIH--------------PDECIDCGVCE 47
           V+ + C  C   +CVE CP   F   E    + IH                 CI CGVCE
Sbjct: 168 VIADECTGCG--NCVEECPKGLFTLVEEGQEVFIHCSSHSGGKDVKEACKTGCIGCGVCE 225

Query: 48  PECPVDAIKPDTEPGLELWLK 68
            +CPVDAI  +    +  + +
Sbjct: 226 TKCPVDAITIEDNLAVIDYEE 246



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 22/73 (30%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGE------------------NFLAIHPDECIDCGVC 46
           E CI C+  +CVEVCP D     EGE                         +EC+ CGVC
Sbjct: 324 EVCIECE--NCVEVCPTDAIQSKEGETEEAEKTNSNDAAEEDDHECSIYITEECVGCGVC 381

Query: 47  EPECPVDAIKPDT 59
             ECPVDAI  + 
Sbjct: 382 VEECPVDAISGED 394



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 24/74 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------------EGEN---------FLAIHPDECIDCGV 45
           E CI C    C E CP+D               E E           + I  +EC+ CGV
Sbjct: 245 EECINCGV--CAEACPMDTIEAPKAKDQVSAVDETEETDTGDDRECSIYIT-EECVGCGV 301

Query: 46  CEPECPVDAIKPDT 59
           C  ECPVDAI  + 
Sbjct: 302 CVEECPVDAISSED 315



 Score = 41.7 bits (97), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
              DC  VC  D     EN L  +  DEC  CG C  ECP   +    E G E+++
Sbjct: 145 GFGDCEAVCSFDAIKMNENGLPEVIADECTGCGNCVEECPKG-LFTLVEEGQEVFI 199


>gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 626

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +E CI C  T C +VCP      E +    I   +CI+CG C   C   AI  +
Sbjct: 575 SEKCIGC--TACTKVCPKGAISGEIKKSHVIDKSKCINCGACSSTCKFSAITKE 626



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I+ ++CI C  C   CP  AI  + +   
Sbjct: 573 INSEKCIGCTACTKVCPKGAISGEIKKSH 601


>gi|89893274|ref|YP_516761.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219666548|ref|YP_002456983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332722|dbj|BAE82317.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219536808|gb|ACL18547.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 203

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T  C  C++  CV+VCPV   Y+ E+    I+ D CI C  C   CP +A
Sbjct: 62  TVACQHCENAPCVKVCPVGATYKAEDGRVLINYDRCIGCRYCMAACPYNA 111


>gi|119716585|ref|YP_923550.1| putative glutamate synthase (NADPH) small subunit [Nocardioides sp.
           JS614]
 gi|119537246|gb|ABL81863.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 544

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 9   CILCKHT----DCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C +     +C  VCP +   +  +      I  D C  CG+C  ECP  AI+   E 
Sbjct: 484 CMSCGNCFSCDNCFGVCPDNAITKTGDPDTPYLIDLDYCKGCGLCAAECPAGAIRMAPEE 543


>gi|303257317|ref|ZP_07343331.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302860808|gb|EFL83885.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 197

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           Y +   C  CK   CV+VCP    ++ E+    I  ++CI C +C   CP  A
Sbjct: 53  YFLPTVCQNCKDAPCVKVCPTGASFKTEDGQVLIDKEKCIGCKMCIAACPYGA 105


>gi|255654945|ref|ZP_05400354.1| iron-dependent hydrogenase [Clostridium difficile QCD-23m63]
 gi|296449691|ref|ZP_06891461.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877992|ref|ZP_06902011.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261415|gb|EFH08240.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431060|gb|EFH16888.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 498

 Score = 59.0 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + VTE C  C    C E C             I+ D C  CG+C+  C  DAI     P
Sbjct: 107 FTVTELCRGCLAHRCKEACKFGAISYINGRAYINHDLCKACGMCKSSCQYDAISEVVRP 165



 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 2   TYVVTENCILCK--------------HTDCVEVCPVDC--FYEGENFLAIHPDECIDCGV 45
            Y+  + C  C                  C  VCP     F        IH D CI+CG 
Sbjct: 137 AYINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGA 196

Query: 46  CEPECPVDAI--KPDTEPGLELWLKINSEYATQWPNITTKKES 86
           C   CP  AI  K    P  +   K  + YA   P IT + +S
Sbjct: 197 CMSACPFGAISDKSLIAPVAKKLAKKENMYAIVAPAITGQIDS 239


>gi|320100963|ref|YP_004176555.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Desulfurococcus mucosus DSM 2162]
 gi|319753315|gb|ADV65073.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus mucosus DSM 2162]
          Length = 637

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + C  C     +  CP      G     I  + C  CG+C   CP  AI    +P  
Sbjct: 572 VIEDKCTGCNACINLTACPAIVIPTGSRKPVILEELCAGCGLCASICPFKAISVKNQPST 631

Query: 64  ELWLKI 69
           E W K+
Sbjct: 632 E-WEKL 636


>gi|254458861|ref|ZP_05072285.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084627|gb|EDZ61915.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 212

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  C  +CPV   +  +N +  I  + CI C  C   CP  AI  D
Sbjct: 57  CNHCQNAPCERICPVSALHYLDNGIVNIDKERCIGCAGCVMACPYGAIYID 107



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 27/82 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPV 52
           E CI C    CV  CP            I P     D+C  C           C   CPV
Sbjct: 87  ERCIGCAG--CVMACPYGAI-------YIDPQTQTADKCTYCAHRVASSMMPACVVACPV 137

Query: 53  DA-IKPDTEPG---LELWLKIN 70
            A I  D +     +  ++++N
Sbjct: 138 QANIFGDLDDPTSNISKYIQVN 159


>gi|269139538|ref|YP_003296239.1| anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           EIB202]
 gi|267985199|gb|ACY85028.1| anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           EIB202]
 gi|304559427|gb|ADM42091.1| Anaerobic dimethyl sulfoxide reductase chain B [Edwardsiella tarda
           FL6-60]
          Length = 205

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    CV+VCP    ++ E+ F+ +    CI C  C   CP  A + + +
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQYNAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|197285542|ref|YP_002151414.1| tetrathionate reductase subunit B [Proteus mirabilis HI4320]
 gi|227356037|ref|ZP_03840428.1| tetrathionate reductase subunit B [Proteus mirabilis ATCC 29906]
 gi|194683029|emb|CAR43509.1| tetrathionate reductase subunit B [Proteus mirabilis HI4320]
 gi|227163814|gb|EEI48722.1| tetrathionate reductase subunit B [Proteus mirabilis ATCC 29906]
          Length = 246

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV VCPV   F   +  + I  + C+ C  C   CP DA
Sbjct: 100 CNHCDEPPCVPVCPVQATFQRKDGIVVIDNERCVGCAYCVQACPYDA 146


>gi|320175671|gb|EFW50760.1| Hydrogenase-2 operon protein hybA precursor [Shigella dysenteriae
           CDC 74-1112]
          Length = 328

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVYYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|183598540|ref|ZP_02960033.1| hypothetical protein PROSTU_01934 [Providencia stuartii ATCC 25827]
 gi|188020717|gb|EDU58757.1| hypothetical protein PROSTU_01934 [Providencia stuartii ATCC 25827]
          Length = 245

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+ +  I  + C+ C  C   CP DA
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVIDNERCVGCAYCVQACPYDA 146


>gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 635

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           MTY +    C+ C    C  VCPV            I    CI CG C  +C  +AI+
Sbjct: 572 MTYTIFPSKCVGCGV--CARVCPVHAIRGVVKKPYHIDQATCIKCGACMDQCRFEAIE 627


>gi|78044791|ref|YP_360645.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996906|gb|ABB15805.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 187

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C   CP    Y+ + F+ I+   CI C VC   CP  AI    E   E
Sbjct: 64  CRQCEDAPCAHACPTGAIYQEDKFVRINEGNCIGCKVCTMVCPFGAIIIAQEEKDE 119


>gi|325970707|ref|YP_004246898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324025945|gb|ADY12704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 369

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C   +CV++C  D     E    I  ++C+ CG C   CP DAI  +     +   K
Sbjct: 197 CIGCG--NCVDICAHDAPMITEGLSWIDQNKCVGCGRCIGVCPTDAISNNDNSSND---K 251

Query: 69  INSEYATQWPNITTKKE 85
           +N + A     I   + 
Sbjct: 252 LNCKIAEYTHAICYTRP 268


>gi|260598003|ref|YP_003210574.1| anaerobic dimethyl sulfoxide reductase subunit B [Cronobacter
           turicensis z3032]
 gi|260217180|emb|CBA31029.1| Anaerobic dimethyl sulfoxide reductase chain B [Cronobacter
           turicensis z3032]
          Length = 205

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEDVCIGCRYCHMACPYGAPQY 116


>gi|56477160|ref|YP_158749.1| subunit B of a molybdenum enzyme, that of tetrathionate reductase
           (TTRB) [Aromatoleum aromaticum EbN1]
 gi|56313203|emb|CAI07848.1| subunit B of a molybdenum enzyme, similar to that of tetrathionate
           reductase (TTRB) [Aromatoleum aromaticum EbN1]
          Length = 246

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           TY++   C  C    CV VCPV   F   +  + +  D C+ C  C   CP DA  I  +
Sbjct: 93  TYMLPRLCNHCDAPPCVPVCPVGATFKREDGIVVVDGDRCVGCAYCVQACPYDARFINHE 152

Query: 59  TEPGLE 64
           T    +
Sbjct: 153 TNKADK 158


>gi|296103099|ref|YP_003613245.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057558|gb|ADF62296.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 205

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|150017381|ref|YP_001309635.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903846|gb|ABR34679.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
          Length = 282

 Score = 58.6 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  CK   C   C VD          I  D+CI CG C   CP  A+K + E
Sbjct: 160 VEADMCKGCK--ICERTCKVDAISMVHKKAVIDYDKCISCGQCVKACPFKAMKLEKE 214


>gi|239623412|ref|ZP_04666443.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522378|gb|EEQ62244.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 241

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC--EPECPVDAIKP 57
          MT  +  E CI C    C + C + C       ++I+ +EC+DCGVC     C  DAI  
Sbjct: 1  MTVRINKEKCIGCG--RCTDYCMLGCITRDGKKVSINEEECVDCGVCLRAGVCAADAIYM 58

Query: 58 DTE 60
            E
Sbjct: 59 PDE 61


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C  C  + C   CPV   Y+ E+    I   +C  CG+C   CP  AIK +
Sbjct: 543 VIREECRKC--SICFRNCPVGAIYKDEDGTYVIDQSKCTKCGICFQVCPFSAIKKE 596



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              +  +EC  C +C   CPV AI  D +
Sbjct: 540 HYEVIREECRKCSICFRNCPVGAIYKDED 568


>gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Moorella thermoacetica ATCC 39073]
          Length = 619

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++YV+    C  C    C  VCPV     G+     I P  CI CG C  +C   AI  +
Sbjct: 562 LSYVIDAGKCTGCG--ACSRVCPVGAISGGKKEAHQIDPAACIKCGSCYEKCRFGAITRE 619


>gi|325281877|ref|YP_004254419.1| Fe-S cluster domain-containing protein [Odoribacter splanchnicus
          DSM 20712]
 gi|324313686|gb|ADY34239.1| Fe-S cluster domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 568

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y   ENC  C    CV  CPV      +N   I  + CI CG C   CP  A
Sbjct: 7  YTEPENCQDC--YKCVRECPVKAIQIEDNKAYIIEERCIYCGHCTQVCPTGA 56



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +   P+ C DC  C  ECPV AI+ +  
Sbjct: 6  IYTEPENCQDCYKCVRECPVKAIQIEDN 33


>gi|298490238|ref|YP_003720415.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          ['Nostoc azollae' 0708]
 gi|298232156|gb|ADI63292.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein ['Nostoc
          azollae' 0708]
          Length = 75

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV  CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTDVCEGV--ADCVSACPVACIHEGPGKNIKGTDWYWIDVATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAILPEERPELQK 72


>gi|239623279|ref|ZP_04666310.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522245|gb|EEQ62111.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 428

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C  VCPV          G+    +  D C+ CGVC   C V AI+    P  
Sbjct: 295 CVGCG--KCARVCPVLAISMKEDGNGKRIPVLDRDICLGCGVCARNCSVKAIELKKRPEQ 352



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 14/39 (35%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           P+           I    C+ CG C   CPV AI    +
Sbjct: 277 PMQPVATTNYIPDISEGTCVGCGKCARVCPVLAISMKED 315


>gi|163749862|ref|ZP_02157107.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
 gi|161330376|gb|EDQ01355.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
          Length = 561

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V T++C LC    CV  CP     +G +  A++    +C+ CG+CE  CP +AI
Sbjct: 426 VNTDSCTLCL--SCVSTCPTQALTDGGDKPALNFLEQDCVQCGLCEKACPENAI 477



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 16/47 (34%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+  CP D        + I P  C   G C   CP  AI  D     
Sbjct: 206 CLNFCPADAIQSINKMIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 252


>gi|268609516|ref|ZP_06143243.1| hypothetical protein RflaF_08470 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VT++CI C    C+  CP  C  E +    I  + C+ CG C   CPV A+
Sbjct: 153 YFVTDDCIRCG--SCLSDCPQSCI-ELKEKALIRQENCLHCGNCAAVCPVGAV 202


>gi|159903840|ref|YP_001551184.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
 gi|159889016|gb|ABX09230.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
          Length = 341

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++T++C+ C    C+ VCP D      + L I    CI CG CE  CP  A
Sbjct: 98  IITDDCVKCNL--CIPVCPTDAI---PSTLEIVDSLCIGCGNCEAVCPPAA 143



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 23  VDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           V     G++ +  AI  D+C+ C +C P CP DAI
Sbjct: 84  VSVGMPGDHHVRKAIITDDCVKCNLCIPVCPTDAI 118


>gi|254172099|ref|ZP_04878775.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
 gi|214033995|gb|EEB74821.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
          Length = 174

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y V  NC  C+   C+EVCP    ++ E+    +  D+CI C +C   CP    + D
Sbjct: 30 AYNVPMNCRHCEKAPCMEVCPTGAIFKDEDGAVLVDVDKCIGCKMCAIVCPFGIPEFD 87


>gi|298242537|ref|ZP_06966344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297555591|gb|EFH89455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 342

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++ C  C +  C E CP       E + + +  D C  CG C   CP   I  D 
Sbjct: 162 SDVCKHCANAPCQEACPTGAIIRTEFDTVYVQQDICNGCGYCTVACPFGVIARDD 216


>gi|282900139|ref|ZP_06308096.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
          raciborskii CS-505]
 gi|281195021|gb|EFA69961.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
          raciborskii CS-505]
          Length = 75

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV+ CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTEICEGV--ADCVDACPVACIHEGPGKNIKGTDWYWIDFTTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P   P L+ 
Sbjct: 59 EGAIVPQERPELQK 72


>gi|304316572|ref|YP_003851717.1| Fe-S cluster domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778074|gb|ADL68633.1| Fe-S cluster domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 436

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +     +    I  ++CIDCG C   CP  A
Sbjct: 11 DRCKGC--TNCIKRCPTEAIRVRDGKAKIIKEKCIDCGECVRVCPYHA 56


>gi|322421699|ref|YP_004200922.1| Fis family sigma-54 specific transcriptional regulator [Geobacter
          sp. M18]
 gi|320128086|gb|ADW15646.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. M18]
          Length = 760

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +T+ C  C    CV  CPV      +++  I  + CI CG C   CP  A
Sbjct: 6  TITDQCRKC--YSCVRSCPVKAIKVEKSYTEIIFERCIGCGNCLSNCPQHA 54


>gi|218440077|ref|YP_002378406.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
 gi|218172805|gb|ACK71538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
          Length = 74

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV+ CPV C + G        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTETCEGV--ADCVDACPVACIHPGPGKNMKGTDWYWIDFTTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAIVPEERPDLQK 72


>gi|152969484|ref|YP_001334593.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954333|gb|ABR76363.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|34557777|ref|NP_907592.1| putative oxidoreductase, Fe-S subunit [Wolinella succinogenes DSM
           1740]
 gi|34483494|emb|CAE10492.1| PUTATIVE OXIDOREDUCTASE, FE-S SUBUNIT [Wolinella succinogenes]
          Length = 217

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  +  C  C    C++ CP    ++G   +  ++   CI C  C   CP  A + D+ 
Sbjct: 64  AYYTSIACNHCDDPACIKACPTGAMHKGLYGIVEVNQSRCIGCKACAMACPYGAPQFDSR 123

Query: 61  PGL 63
            G 
Sbjct: 124 QGH 126


>gi|52426419|ref|YP_089556.1| hydrogenase 2 protein HybA [Mannheimia succiniciproducens MBEL55E]
 gi|52308471|gb|AAU38971.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 330

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +  
Sbjct: 108 IKKQCMHCVDPNCVSVCPVQALTKNPKTGIVGYDPDICTGCRYCMVACPFDVPKYDYDNP 167

Query: 63  LEL 65
           L  
Sbjct: 168 LGQ 170


>gi|20089624|ref|NP_615699.1| hypothetical protein MA0739 [Methanosarcina acetivorans C2A]
 gi|19914545|gb|AAM04179.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 219

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y +TE C  C    C E+CP     +GE    I    C++CG C   CP DAI+P +
Sbjct: 164 YKITEKCTACG--ICKELCPSRAISKGE-IYKIDGSICLECGRCAENCPYDAIEPPS 217


>gi|332278371|ref|ZP_08390784.1| hydrogenase 4 Fe-S subunit [Shigella sp. D9]
 gi|332100723|gb|EGJ04069.1| hydrogenase 4 Fe-S subunit [Shigella sp. D9]
          Length = 218

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|220917911|ref|YP_002493215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955765|gb|ACL66149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 490

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C+   C   CP    + +    + +  D CI CG C   CP  A
Sbjct: 59  CMQCEAHPCTVDCPSGATYVDANGVVVVDADVCIGCGTCVAACPYGA 105



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V  + CI C    CV  CP    +       +  ++C  C           C   CP + 
Sbjct: 86  VDADVCIGCG--TCVAACPYGARHVDPVKHVV--EKCNLCAPFVARGERPACVETCPAEC 141


>gi|331673937|ref|ZP_08374700.1| hydrogenase-4 component A [Escherichia coli TA280]
 gi|331069210|gb|EGI40602.1| hydrogenase-4 component A [Escherichia coli TA280]
          Length = 218

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEKAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|152970131|ref|YP_001335240.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954980|gb|ABR77010.1| anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|307545319|ref|YP_003897798.1| electron transporter RnfB [Halomonas elongata DSM 2581]
 gi|307217343|emb|CBV42613.1| K03616 electron transport complex protein RnfB [Halomonas elongata
           DSM 2581]
          Length = 325

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I     P  +
Sbjct: 81  DECIGC--TKCIQACPVDAILGAAKQMHTVIESECTGCELCVAPCPVDCIDLLPHPEWQ 137



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 78 IREDECIGCTKCIQACPVDAI 98


>gi|296102541|ref|YP_003612687.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057000|gb|ADF61738.1| anaerobic dimethyl sulfoxide reductase, B subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++ F+ ++ D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVNEDVCIGCRYCHMACPYGAPQY 116


>gi|284050914|ref|ZP_06381124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arthrospira platensis str. Paraca]
 gi|291569756|dbj|BAI92028.1| ferredoxin-like protein [Arthrospira platensis NIES-39]
          Length = 75

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV  CPV C + G        ++  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGV--ADCVGACPVACIHPGPGKNTKGTDWYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAIVAEERPELQQ 72


>gi|55378014|ref|YP_135864.1| molybdopterin oxidoreductase [Haloarcula marismortui ATCC 43049]
 gi|55230739|gb|AAV46158.1| molybdopterin oxidoreductase [Haloarcula marismortui ATCC 43049]
          Length = 276

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           M Y  T  C  C++  CV+VCPV+  Y  ++ +  I  D+CI C  C   CP +A
Sbjct: 64  MQYQPT-ACQHCENAPCVKVCPVNATYTRDDGIVEIDYDKCIGCRYCMAACPYNA 117


>gi|331002204|ref|ZP_08325723.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411298|gb|EGG90714.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 393

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ ++C  C  T CV+ CP D          I    C  CG C   CP DAI  D     
Sbjct: 5   VIEKDCRGC--TKCVKSCPFDAITMENKKAVIG-IACTSCGTCIEVCPFDAIVKDEIEKE 61

Query: 64  ELWLKINSEYATQWPNITTKKESLPS-AAKMDGVKQKY 100
           E  L +   Y   W     ++  L   A ++ G  +K 
Sbjct: 62  ENDLTL---YHDIWVFAEQRQGQLQDVALELLGEGKKL 96


>gi|327400436|ref|YP_004341275.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327315944|gb|AEA46560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 636

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            E C  CK   C+ +CP       E      I    C  CG+C P CPV AIK       
Sbjct: 564 GERCSGCKL--CIALCPYRAISYDEERGVCVIDETFCKGCGICVPACPVGAIKARHYTTE 621

Query: 64  ELWLKI 69
           +++ +I
Sbjct: 622 QIFAEI 627



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 23/80 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPV-------------DCFY---EG--ENFLAIHPDECI--- 41
           YV  + C+ C    C E CPV                Y    G   N   I  + C+   
Sbjct: 236 YVDADKCVGCG--MCTEACPVRVANDYEYGMKERGAIYLPYPGVLPNVPVIDRENCLYTR 293

Query: 42  DCGVCEPECPVDAIKPDTEP 61
            C  C   C  +AI  +   
Sbjct: 294 GCQKCIESCAFEAINFEDNA 313



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  + C  C +C   CP  AI  D E G
Sbjct: 562 IDGERCSGCKLCIALCPYRAISYDEERG 589


>gi|325278937|ref|YP_004251479.1| Fe-S cluster domain-containing protein [Odoribacter splanchnicus
          DSM 20712]
 gi|324310746|gb|ADY31299.1| Fe-S cluster domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 452

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          +E C  C  T C+ VCP            I+   C DCG+C   CP  AI  + +   ++
Sbjct: 14 SEVCTGC--THCMNVCPTAAIRIKYGKATINEAACTDCGMCLKTCPRQAIYVEQDDFNQI 71

Query: 66 W 66
          +
Sbjct: 72 F 72



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I+ + C  C  C   CP  AI+
Sbjct: 10 LKINSEVCTGCTHCMNVCPTAAIR 33


>gi|308274768|emb|CBX31367.1| hypothetical protein N47_E48790 [uncultured Desulfobacterium sp.]
          Length = 943

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V TE+C+ C    CV  CP D   F   +  + I   +C  CGVC   CP  AI+ +   
Sbjct: 870 VDTEHCVKCL--TCVRSCPFDVPVFNIEKQIIEIDDAKCQGCGVCASVCPRQAIQLNYYE 927

Query: 62  GLELWLKINSEYA 74
             ++  KI++  A
Sbjct: 928 DNQITSKIDALLA 940



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 20/69 (28%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECIDCGVCEPEC 50
           C  C   +C   CPV         L                   I  + CI CG+CE  C
Sbjct: 48  CTGCG--ECARHCPVTAINRYNKGLDERRATFIEYPQAVPLAFGIDANTCIGCGLCESMC 105

Query: 51  PVDAIKPDT 59
              AI+ D 
Sbjct: 106 VAKAIRYDD 114



 Score = 40.9 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           I P  C  CG C   CPV AI
Sbjct: 42 YIDPVICTGCGECARHCPVTAI 63


>gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 489

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV   C+ C  T C  VCPV C   + +    I  + CI CG C   C   AI
Sbjct: 435 FVVAAKCVGC--TACARVCPVSCISGKAKEVHLIDQNSCIKCGACIERCKFGAI 486


>gi|89892418|gb|ABD78998.1| HI1046-like protein [Haemophilus influenzae]
          Length = 122

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++  +   I + + CI C  C   CP DA + D +
Sbjct: 60  AYYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQ 119


>gi|260910260|ref|ZP_05916937.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260635764|gb|EEX53777.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 55

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M YV+  +CI C    C+  CPV+   EG +   I  D C +CG C   CP +AI
Sbjct: 1  MAYVIGNDCIACG--TCLPECPVEAISEG-DIYKIDADACTECGTCASVCPSEAI 52


>gi|194442787|ref|YP_002040746.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401450|gb|ACF61672.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|56413983|ref|YP_151058.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197362906|ref|YP_002142543.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56128240|gb|AAV77746.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094383|emb|CAR59898.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|50120186|ref|YP_049353.1| hydrogenase-4 component A [Pectobacterium atrosepticum SCRI1043]
 gi|49610712|emb|CAG74157.1| hydrogenase-4 component A [Pectobacterium atrosepticum SCRI1043]
          Length = 206

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C+   C  VCPV+        + ++   CI C +C   CP  AI P
Sbjct: 51 CRQCEDAPCARVCPVNAITHENAAIVLNESLCIGCKLCGLVCPFGAITP 99


>gi|169831040|ref|YP_001717022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637884|gb|ACA59390.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 995

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 20/80 (25%)

Query: 4   VVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECIDCGV 45
           V  E C  C    C  VCPV   D F  G                    + P+ CI+C +
Sbjct: 104 VAAEACKGCGD--CAAVCPVEVPDAFNMGFGTRKAIYQPYSQAYPRAYVLDPEHCIECTL 161

Query: 46  CEPECPVDAIKPDTEPGLEL 65
           C   CP  A+          
Sbjct: 162 CVEACPTGAVTLGAPEEASQ 181



 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  E C  C    CV VCP +      N   I P +C  CG+C  ECP  AI 
Sbjct: 917 ARVTPEKCAACLG--CVRVCPFNVPVIAGNISWIEPVQCQGCGICVAECPNAAIH 969


>gi|121535868|ref|ZP_01667666.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305533|gb|EAX46477.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 235

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP-------VDAIKPDT 59
            C  C++  CV VCPV   Y+G++ +  I   +CI C  C   CP         A   D 
Sbjct: 80  PCFQCENPPCVPVCPVKATYKGDDGIVVIDYTKCIGCRSCVAACPYGARTFDAGAYYTDG 139

Query: 60  EPGLELWLKINS-EYATQW 77
            P ++ + K  + EY   W
Sbjct: 140 TPAVQEYEKAAAFEYGKAW 158


>gi|300930083|ref|ZP_07145509.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300462010|gb|EFK25503.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
          Length = 218

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|256017375|ref|ZP_05431240.1| hydrogenase 4, 4Fe-4S subunit [Shigella sp. D9]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|238893956|ref|YP_002918690.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546272|dbj|BAH62623.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|227328564|ref|ZP_03832588.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 674

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTSPVDNSAIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125


>gi|113954804|ref|YP_730603.1| iron-sulfur cluster-binding protein [Synechococcus sp. CC9311]
 gi|113882155|gb|ABI47113.1| iron-sulfur cluster-binding protein [Synechococcus sp. CC9311]
          Length = 74

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C   G        +F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDICEGV--ADCVDACPVACIKPGSGANKKGTDFYWIDFDTCIDCGICLQVCPV 58

Query: 53 -DAIKPDTEPGLE 64
           +AI P+    L+
Sbjct: 59 ANAIVPEERADLQ 71


>gi|315652760|ref|ZP_07905734.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum
           DSM 3986]
 gi|315484962|gb|EFU75370.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum
           DSM 3986]
          Length = 393

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ ++C  C  T CV+ CP D          I    C  CG C   CP DAI  D     
Sbjct: 5   VIEKDCRGC--TKCVKSCPFDAITMENKKAVIG-IACTSCGTCIEVCPFDAIVKDEIEKE 61

Query: 64  ELWLKINSEYATQWPNITTKKESLPS-AAKMDGVKQKY 100
           E  L +   Y   W     ++  L   A ++ G  +K 
Sbjct: 62  ENDLTL---YHDIWVFAEQRQGQLQDVALELLGEGKKL 96


>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 598

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M YV+  E C  C    C + CPV     GE      I  ++C+ CGVC  +CP  AI
Sbjct: 540 MKYVINAETCKSCG--ICAKQCPVGAIS-GEKKVPYVIDQNKCVKCGVCMEKCPFKAI 594



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 1   MTYVVTENCILCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           M +V+           C   VC             I+ + C  CG+C  +CPV AI  + 
Sbjct: 523 MAHVI--------DKKCPAGVCKSMM------KYVINAETCKSCGICAKQCPVGAISGEK 568

Query: 60  EPG 62
           +  
Sbjct: 569 KVP 571


>gi|53802318|ref|YP_112990.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
 gi|53756079|gb|AAU90370.1| ferredoxin, 4Fe-4S [Methylococcus capsulatus str. Bath]
          Length = 87

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 14/83 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE+   I P  C +C        C   CPV+ 
Sbjct: 1  MALIITDECINCDV--CEPECPNGAISQGEDIYVIDPARCTECVGHFERPQCVEVCPVEC 58

Query: 55 IKPDTEPGLEL------WLKINS 71
          I PD +   +       ++++N+
Sbjct: 59 IHPDPDYREDHDTLYRKYVELNA 81


>gi|327311122|ref|YP_004338019.1| Formate dehydrogenase subunit beta [Thermoproteus uzoniensis
           768-20]
 gi|326947601|gb|AEA12707.1| Formate dehydrogenase, beta subunit [Thermoproteus uzoniensis
           768-20]
          Length = 281

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C +  C   CP           + I+ D+CI CG CE  CP D  +
Sbjct: 95  CMHCVNPPCARACPSGAISVTPEGAVVINKDQCIGCGFCENACPYDVPR 143



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 14/56 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           + CI C    C   CP D    G +       +C  C           C   CP  
Sbjct: 125 DQCIGCGF--CENACPYDVPRRGSDGKYY---KCTFCVDRIQNGREPACVEVCPTG 175


>gi|117621401|ref|YP_857038.1| hydrogenase 2 protein HybA [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562808|gb|ABK39756.1| hydrogenase-2 operon protein HybA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 341

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +  
Sbjct: 109 IKKQCMHCVDPNCVSVCPVQALTKDPKTGIVHYDPDVCTGCRYCMVGCPFDVPKYDYDNP 168

Query: 63  L 63
           L
Sbjct: 169 L 169


>gi|83590297|ref|YP_430306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573211|gb|ABC19763.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 1067

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C    CV VCP       ++   I P  C  CG C   CP  AI
Sbjct: 871 VEGACAACL--TCVRVCPHGAPAIKDHRSHIDPLLCQGCGACVAACPARAI 919


>gi|311280192|ref|YP_003942423.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
 gi|311280195|ref|YP_003942426.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
 gi|308749387|gb|ADO49139.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
 gi|308749390|gb|ADO49142.1| dimethylsulfoxide reductase, chain B [Enterobacter cloacae SCF1]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|255993975|ref|ZP_05427110.1| conserved domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993643|gb|EEU03732.1| conserved domain protein [Eubacterium saphenum ATCC 49989]
          Length = 55

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +T+ C+ C    C+  CPV+   EG    +I P+ CIDCG C   C   AI
Sbjct: 1  MAYEITDACVACG--ACISECPVEAISEGSP-YSIDPNTCIDCGACASVCGAAAI 52


>gi|260597696|ref|YP_003210267.1| formate dehydrogenase-H ferredoxin subunit [Cronobacter turicensis
           z3032]
 gi|260216873|emb|CBA30415.1| Electron transport protein hydN [Cronobacter turicensis z3032]
          Length = 197

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++    P
Sbjct: 74  CRQCEDAPCASVCPNGAISRDGDFVHVHQQRCIGCKTCVVACPYGAMEVVVRP 126


>gi|16330286|ref|NP_441014.1| ferredoxin [Synechocystis sp. PCC 6803]
 gi|1652775|dbj|BAA17694.1| ferredoxin [Synechocystis sp. PCC 6803]
          Length = 75

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCVE CPV C + G+       ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTETCEGV--ADCVEACPVACIHPGDGKNTIGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAILPEERPDLQK 72


>gi|323700274|ref|ZP_08112186.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323460206|gb|EGB16071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 704

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           E C+      CV  CP D  + G   L  I P+ C  CG C   CP   I
Sbjct: 136 EGCLGLG--SCVRACPFDAIHMGPEGLPVIDPNRCKACGNCVDACPRGVI 183


>gi|320180612|gb|EFW55541.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella boydii
           ATCC 9905]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPVCTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|300853894|ref|YP_003778878.1| putative 4Fe-4S ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300434009|gb|ADK13776.1| putative 4Fe-4S ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 184

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C+  CPV+   E +  + I+   CI C  C   CPV A+
Sbjct: 64  CRHCEDAPCLNACPVNAIVEKDGSIIINESACIGCQTCTIVCPVGAV 110


>gi|298369582|ref|ZP_06980899.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298282139|gb|EFI23627.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 284

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + ++    CI C  T C+  CPVD        +  +  DEC  CG+C   CPVD I 
Sbjct: 72  LAWIDETACIGC--TACIRACPVDAIMGARKLMHTVIADECTGCGLCVAPCPVDCIH 126


>gi|157371163|ref|YP_001479152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157322927|gb|ABV42024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 184

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           M + ++ +C  C    C+EVCP D + +  + + +   D+CI C +C   CP +A   D
Sbjct: 50  MAF-ISMSCNHCDDPQCMEVCPADTYSKRPDGIVVQDHDKCIGCRMCIMACPYNAPVFD 107


>gi|50123378|ref|YP_052545.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613904|emb|CAG77357.1| anaerobically expressed oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 674

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP     + +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIKKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNPMDNSAIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125


>gi|194437650|ref|ZP_03069746.1| hydrogenase-4 component A [Escherichia coli 101-1]
 gi|253772627|ref|YP_003035458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162456|ref|YP_003045564.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli B str. REL606]
 gi|297517623|ref|ZP_06936009.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli OP50]
 gi|194423456|gb|EDX39447.1| hydrogenase-4 component A [Escherichia coli 101-1]
 gi|242378081|emb|CAQ32852.1| hydrogenase 4, component A, subunit of hydrogenase 4 [Escherichia
          coli BL21(DE3)]
 gi|253323671|gb|ACT28273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974357|gb|ACT40028.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli B str. REL606]
 gi|253978524|gb|ACT44194.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BL21(DE3)]
 gi|323961274|gb|EGB56886.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323970998|gb|EGB66247.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 205

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 590

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y + T+ CI C  T C  +CPV       +    I   +C+ CG C+  CPV AI  D
Sbjct: 535 YTINTDLCIGC--TRCARICPVGAISGKVKEPHEIDDAKCVRCGQCKQTCPVSAIFVD 590



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 11  LCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             K   C  +VCP            I+ D CI C  C   CPV AI    +   E
Sbjct: 518 HVKDKKCPAKVCP------SLIRYTINTDLCIGCTRCARICPVGAISGKVKEPHE 566


>gi|260913909|ref|ZP_05920383.1| tetrathionate reductase subunit B [Pasteurella dagmatis ATCC 43325]
 gi|260631996|gb|EEX50173.1| tetrathionate reductase subunit B [Pasteurella dagmatis ATCC 43325]
          Length = 245

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   Y+ ++ +  I+ + CI C  C   CP DA  I  +T+   +
Sbjct: 99  CNHCDNPPCVPVCPVQATYQRKDGIVVINNERCIGCAYCVQACPYDARFINEETKTADK 157


>gi|219667285|ref|YP_002457720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537545|gb|ACL19284.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score = 58.6 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           YV T  C  C +  CV  CP    Y+ +  L +H P++CI C  C   CP + I  +++ 
Sbjct: 53  YVPT-LCNHCDNAACVRACPTKAMYKDDKGLTLHDPNKCIGCKSCMQACPYEVINYNSKE 111

Query: 62  GLELW 66
               W
Sbjct: 112 PHGYW 116


>gi|317969911|ref|ZP_07971301.1| iron-sulfur cluster-binding protein [Synechococcus sp. CB0205]
          Length = 74

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C   G         F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGV--ADCVDACPVACINPGTGANAKGTEFYWIDFDTCIDCGICLQVCPV 58

Query: 53 -DAIKPDTEPGLE 64
            AI P+ +P L+
Sbjct: 59 AGAIVPEEKPELQ 71


>gi|283785102|ref|YP_003364967.1| oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
 gi|282948556|emb|CBG88146.1| putative oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
          Length = 222

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C+EVCP    +  E  +  +    CI CG C   CP     + P ++   
Sbjct: 90  QSCQHCEDAPCIEVCPTGASWRDERGIVRVDGSRCIGCGYCIGACPYQVRYLHPQSKVAD 149

Query: 64  ELWLKINSEYATQWPNIT 81
           +      S  A  +P I 
Sbjct: 150 KCDFCAESRLAKGFPPIC 167



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 26/92 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG----------VCEP 48
           V    CI C +  C+  CP            +HP     D+C  C           +C  
Sbjct: 119 VDGSRCIGCGY--CIGACPYQV-------RYLHPQSKVADKCDFCAESRLAKGFPPICVS 169

Query: 49  ECPVDAIKP--DTEPGLELWLKINSEYATQWP 78
            CP  A+    +  P ++ WL  N  Y  Q P
Sbjct: 170 SCPEQALLFGREDSPQIQRWLHDNVWYQHQLP 201


>gi|238894601|ref|YP_002919335.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238546917|dbj|BAH63268.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|225619733|ref|YP_002720990.1| iron only hydrogenase large subunit, C-terminal domain-containing
           protein [Brachyspira hyodysenteriae WA1]
 gi|225214552|gb|ACN83286.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Brachyspira hyodysenteriae WA1]
          Length = 490

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT  C  C    C+  CP D      E    I   +CI+CG+C   CP  AI
Sbjct: 112 FMVTNACQACLARPCMVNCPKDAITILDEKRAHIDSSKCINCGLCLKNCPYHAI 165



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 15/68 (22%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            ++ +  CI C                  C E CPV    + +     I   +CI CG C
Sbjct: 143 AHIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNDQGKEVIDYHKCIFCGNC 202

Query: 47  EPECPVDA 54
             ECP  A
Sbjct: 203 MRECPFSA 210


>gi|158522835|ref|YP_001530705.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158511661|gb|ABW68628.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 699

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 8   NC-ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C   C  + DC++ C  D    GE+    + P +C+ CG CE  CP + I+  T     
Sbjct: 132 DCPTGCLGYGDCIKACAFDAIVMGEDGYPVVDPAKCVGCGACEAVCPKNIIRVKT-MSQR 190

Query: 65  LWLKINSEYATQWP 78
           L+ + N+      P
Sbjct: 191 LF-EFNATNGAHAP 203


>gi|300865547|ref|ZP_07110328.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oscillatoria sp. PCC
          6506]
 gi|300336453|emb|CBN55478.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oscillatoria sp. PCC
          6506]
          Length = 75

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV- 52
          M + +  N I     DCV+ CPV C +EG        ++  I    CIDCG+C   CPV 
Sbjct: 1  MPHTIVTN-ICEGVADCVDACPVACIHEGPGKNVKGTDWYWIDFQTCIDCGICLQVCPVA 59

Query: 53 DAIKPDTEPGLEL 65
           AI  +  P L+ 
Sbjct: 60 GAIVAEERPELQQ 72


>gi|328952049|ref|YP_004369383.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452373|gb|AEB08202.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1014

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C  C    CV  CP D  F   + +  I P +C  CGVC  ECP  AI+
Sbjct: 942 VDGEICAACL--ICVRACPFDVPFINDKGYSEIDPAKCHGCGVCAAECPAKAIQ 993



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 14/77 (18%)

Query: 3   YVVTENCILC-----KHTDCVEVCPV------DCFY---EGENFLAIHPDECIDCGVCEP 48
           Y+ TE C  C     K  +CV   P        C        +  +I  ++C +      
Sbjct: 105 YIDTEKCTACGECYRKFPECVRFTPGLDHRAPTCMRYPKTTPDAFSIDMEKCTNKDELVK 164

Query: 49  ECPVDAIKPDTEPGLEL 65
            CP  AI  D  P  + 
Sbjct: 165 VCPAGAIILDDGPKTQE 181


>gi|325288996|ref|YP_004265177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964397|gb|ADY55176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +++ C+ C    C EVCPV         EG   + +  + C+ CGVC   CP +A++ 
Sbjct: 290 ISQECVGCG--KCAEVCPVLAISRPDNKEGRTAVQVDHEVCLGCGVCVRSCPKNAVEF 345



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 39  ECIDCGVCEPECPVDAI-KPDTEPG 62
           EC+ CG C   CPV AI +PD + G
Sbjct: 293 ECVGCGKCAEVCPVLAISRPDNKEG 317


>gi|77919429|ref|YP_357244.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
 gi|77545512|gb|ABA89074.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          Y     C  C  + CV  CPV      +    I P++C+ CG C   CP +A  ++ D +
Sbjct: 12 YTRETECQDC--SKCVRYCPVKAIKVADGQARIVPEKCVACGTCVRVCPANAKRVRDDLD 69

Query: 61 P-------GLELWLKINSEYATQWPNITT 82
          P          +++ +   Y +++P+I +
Sbjct: 70 PTKRMLLSSDRVYVSLAPSYVSEFPDIPS 98


>gi|307257755|ref|ZP_07539512.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306863661|gb|EFM95587.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +    ++ D CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEDTCIGCRYCSMACPYDAPQY 116


>gi|206578002|ref|YP_002237195.1| AegA protein [Klebsiella pneumoniae 342]
 gi|290508337|ref|ZP_06547708.1| oxidoreductase Fe-S binding subunit [Klebsiella sp. 1_1_55]
 gi|206567060|gb|ACI08836.1| AegA protein [Klebsiella pneumoniae 342]
 gi|289777731|gb|EFD85728.1| oxidoreductase Fe-S binding subunit [Klebsiella sp. 1_1_55]
          Length = 660

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP  
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVSQEKCIGCKSCMVACPFG 100


>gi|190151004|ref|YP_001969529.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249916|ref|ZP_07336118.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253741|ref|ZP_07339877.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248722|ref|ZP_07530735.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250968|ref|ZP_07532894.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307253340|ref|ZP_07535212.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255583|ref|ZP_07537388.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307260034|ref|ZP_07541746.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262162|ref|ZP_07543813.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307264361|ref|ZP_07545949.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189916135|gb|ACE62387.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302647397|gb|EFL77617.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650979|gb|EFL81133.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854649|gb|EFM86839.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856996|gb|EFM89126.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859204|gb|EFM91245.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861432|gb|EFM93421.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865870|gb|EFM97746.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868139|gb|EFM99964.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870313|gb|EFN02069.1| Anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +    ++ D CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEDTCIGCRYCSMACPYDAPQY 116


>gi|42526786|ref|NP_971884.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
 gi|41817101|gb|AAS11795.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
          Length = 493

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T  C  C    C+  CP            I  ++CI+CG+C   CP  A+
Sbjct: 112 YMITNACQACVARPCMMNCPKTAIAISGGRARIDEEKCINCGICLKNCPYHAV 164



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C E CPV    + EN    I   +CI CG C  ECP
Sbjct: 147 EKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMRECP 206

Query: 52  VDA 54
             A
Sbjct: 207 FGA 209


>gi|284922428|emb|CBG35515.1| hydrogenase-4 component A [Escherichia coli 042]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|226329951|ref|ZP_03805469.1| hypothetical protein PROPEN_03864 [Proteus penneri ATCC 35198]
 gi|225200746|gb|EEG83100.1| hypothetical protein PROPEN_03864 [Proteus penneri ATCC 35198]
          Length = 154

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y +T +C  C+   CV+ CP    +  EG+  + +   +C+ CG C   CP  A + + 
Sbjct: 71  AYTLTISCNHCESPVCVKNCPTTAMHKREGDGIVRVDTSKCVGCGYCAWSCPYGAPQMNE 130

Query: 60  EPGL 63
           E G 
Sbjct: 131 ETGQ 134


>gi|206578545|ref|YP_002239452.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288936302|ref|YP_003440361.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|290510643|ref|ZP_06550013.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
 gi|206567603|gb|ACI09379.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288891011|gb|ADC59329.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|289777359|gb|EFD85357.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|237732453|ref|ZP_04562934.1| aegA [Citrobacter sp. 30_2]
 gi|226907992|gb|EEH93910.1| aegA [Citrobacter sp. 30_2]
          Length = 659

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++P +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHDNDSVQVNPQKCIGCKSCVVACPFG 100


>gi|157156854|ref|YP_001463806.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|157078884|gb|ABV18592.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++ + CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNENLCIGCKLCAVVCPFGAI 97


>gi|317056952|ref|YP_004105419.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
 gi|315449221|gb|ADU22785.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++CI C    C+  CP  C  E      I  + C+ CG C   CPV A+
Sbjct: 153 YFVNDDCIGCG--SCLSACPQSCI-ELNGKAVIRQENCLHCGNCAEVCPVGAV 202



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 38  DECIDCGVCEPECPVDAIK 56
           D+CI CG C   CP   I+
Sbjct: 157 DDCIGCGSCLSACPQSCIE 175


>gi|301057563|ref|ZP_07198643.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
 gi|300448287|gb|EFK11972.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
          Length = 405

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  VV E  C  CK   CVE CP            I+ D C +CG C   C   AI  +
Sbjct: 1  MPVVVNEEKCKGCKL--CVEACPYAAISMRNKKAVIN-DGCTNCGSCIDSCEFGAIGFE 56


>gi|154491084|ref|ZP_02031025.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC
           43184]
 gi|154088832|gb|EDN87876.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC
           43184]
          Length = 262

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C++  C++VCPV      ++ +   P  CI C  C  ECP  A   DT 
Sbjct: 192 DLCTQCEY--CIDVCPVSAISIVDDRIFSDPATCIKCCACVKECPEGARTFDTP 243



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 10/32 (31%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                    D C  C  C   CPV AI    +
Sbjct: 183 TPQAPVTDEDLCTQCEYCIDVCPVSAISIVDD 214


>gi|300940277|ref|ZP_07154874.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300454918|gb|EFK18411.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 218

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|289191966|ref|YP_003457907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938416|gb|ADC69171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 141

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C+  CP +      + + +  D+CI CG+C   CP  AI+ D
Sbjct: 33 CMHCDKNPCLYACPENAIERINDKVVVIKDKCIGCGLCALACPFGAIRID 82


>gi|237731458|ref|ZP_04561939.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
 gi|226906997|gb|EEH92915.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter sp.
           30_2]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQY 116


>gi|226952541|ref|ZP_03823005.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
 gi|226836723|gb|EEH69106.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
          Length = 267

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI--KPDTEP 61
           + CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I   PDT+P
Sbjct: 94  DECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCIDLIPDTKP 149



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 91  IREDECIGCTKCISACPVDAI 111


>gi|91204283|emb|CAJ71936.1| hypothetical protein kustc1191 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 308

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    CVE C  D     +  + I  ++C++CG+C   CPV  IK
Sbjct: 193 ECIEC--MKCVEACREDAITVKDAQVTIDKEKCVECGICAKVCPVGTIK 239


>gi|288934133|ref|YP_003438192.1| glutamate synthase, small subunit [Klebsiella variicola At-22]
 gi|288888862|gb|ADC57180.1| glutamate synthase, small subunit [Klebsiella variicola At-22]
          Length = 660

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP  
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVSQEKCIGCKSCMVACPFG 100


>gi|253570623|ref|ZP_04848031.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
 gi|251839572|gb|EES67655.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
          Length = 387

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV--DAIKPDTE 60
          NC  C    C EVCP  C     +   F    +    CIDCG CE  CP     IK DT 
Sbjct: 11 NCSGCN--ACAEVCPKHCIEMVPDKKGFFYPKVDAVTCIDCGACEKVCPFQDGNIKLDTP 68

Query: 61 PGLELWLKINSE 72
            L  +   N +
Sbjct: 69 --LTAYAAWNKD 78


>gi|253701320|ref|YP_003022509.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776170|gb|ACT18751.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 439

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
          V+   CI C    C   CPVD     E    I    +CI C  C   CP  AI+    P 
Sbjct: 17 VLEGRCIACGAR-CQSACPVDAIQMNEAGEPIVDASKCIGCVKCVKVCPAQAIEMAFTPE 75

Query: 63 LE 64
           +
Sbjct: 76 EK 77


>gi|152971333|ref|YP_001336442.1| putative oxidoreductase Fe-S binding subunit [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956182|gb|ABR78212.1| putative oxidoreductase, Fe-S subunit (anaerobically expressed
          gene) [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
          Length = 637

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   CV  CP D   +  + + +  ++CI C  C   CP  
Sbjct: 33 CRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFG 77


>gi|300951821|ref|ZP_07165633.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301644471|ref|ZP_07244468.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|331643098|ref|ZP_08344233.1| hydrogenase-4 component A [Escherichia coli H736]
 gi|300448952|gb|EFK12572.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301077216|gb|EFK92022.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|331039896|gb|EGI12116.1| hydrogenase-4 component A [Escherichia coli H736]
          Length = 218

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|23015034|ref|ZP_00054824.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 339

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTE 60
           +  +C+ C    CV  CPV        +  +  + D CI C  C   CP      + DT 
Sbjct: 115 IKRSCLHCADPSCVSACPVSAMQKRPTDGVVTYNKDACIGCRYCVAACPFGVPQFQYDTP 174

Query: 61  PGL 63
              
Sbjct: 175 TPQ 177


>gi|313201532|ref|YP_004040190.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. MP688]
 gi|312440848|gb|ADQ84954.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. MP688]
          Length = 280

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I  +  
Sbjct: 94  AFIDEQTCIGC--TLCIQACPVDAILGASKQMHTVIADECTGCELCIAPCPVDCITMEPP 151

Query: 61  P 61
           P
Sbjct: 152 P 152



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE 30
           M  V+ + C  C+   C+  CPVDC     
Sbjct: 123 MHTVIADECTGCEL--CIAPCPVDCITMEP 150


>gi|300817759|ref|ZP_07097974.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820857|ref|ZP_07101007.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300903489|ref|ZP_07121414.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|301302831|ref|ZP_07208959.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|309794478|ref|ZP_07688901.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|331678465|ref|ZP_08379140.1| hydrogenase-4 component A [Escherichia coli H591]
 gi|300404521|gb|EFJ88059.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300526610|gb|EFK47679.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300529747|gb|EFK50809.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300841766|gb|EFK69526.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|308121934|gb|EFO59196.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315256495|gb|EFU36463.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|324020155|gb|EGB89374.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|331074925|gb|EGI46245.1| hydrogenase-4 component A [Escherichia coli H591]
          Length = 218

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|257792484|ref|YP_003183090.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476381|gb|ACV56701.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 217

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           V   C+ C+   CV+ CP       ++ +  I  ++CI CG+C   CP  A
Sbjct: 55  VPNACVQCEKPACVDACPTGASVRRDDGITVIDYEKCIACGLCLAACPYGA 105


>gi|170019234|ref|YP_001724188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Escherichia coli ATCC 8739]
 gi|169754162|gb|ACA76861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli ATCC 8739]
 gi|309702761|emb|CBJ02090.1| hydrogenase-4 component A [Escherichia coli ETEC H10407]
 gi|320200042|gb|EFW74631.1| Hydrogenase-4 component A [Escherichia coli EC4100B]
 gi|323941262|gb|EGB37447.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|332344300|gb|AEE57634.1| hydrogenase-4, subunit A HyfA [Escherichia coli UMNK88]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|116070524|ref|ZP_01467793.1| ferredoxin [Synechococcus sp. BL107]
 gi|116065929|gb|EAU71686.1| ferredoxin [Synechococcus sp. BL107]
          Length = 74

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +V+E C      DCV+ CPV C         +G +F  I+ D CIDCG+C   CPV
Sbjct: 1  MAHTIVSEVCEGI--ADCVDACPVACIDQGNGKNTKGTDFYVINFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAILAEERPDLQK 72


>gi|78221282|ref|YP_383029.1| sigma-54 dependent trancsriptional regulator [Geobacter
          metallireducens GS-15]
 gi|78192537|gb|ABB30304.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          metallireducens GS-15]
          Length = 756

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 1  MTYVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  ++T  E C  C    CV  CPV      +++  I  D CI CG C   CP  A
Sbjct: 1  MEPIITVKEKCRKC--YCCVRSCPVKAIKVAKSYTEIIVDRCIGCGNCLSNCPQQA 54


>gi|167040768|ref|YP_001663753.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp.
          X514]
 gi|256750978|ref|ZP_05491861.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|300914806|ref|ZP_07132122.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561]
 gi|307723960|ref|YP_003903711.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp.
          X513]
 gi|166855008|gb|ABY93417.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X514]
 gi|256750088|gb|EEU63109.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus
          CCSD1]
 gi|300889741|gb|EFK84887.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561]
 gi|307581021|gb|ADN54420.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X513]
          Length = 435

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 1  MTYV--VT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y   VT   + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKAMIINERCIDCGECIRVCPYHA 57


>gi|293410876|ref|ZP_06654452.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471344|gb|EFF13828.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|238920547|ref|YP_002934062.1| hydrogenase 2 protein HybA [Edwardsiella ictaluri 93-146]
 gi|238870116|gb|ACR69827.1| hydrogenase 2 protein HybA [Edwardsiella ictaluri 93-146]
          Length = 327

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV     +     +   PD C  C  C   CP D  K D +
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALKKHPVTGIVMYDPDVCTGCRYCMVACPFDVPKYDYD 166


>gi|325505030|dbj|BAJ83592.1| putative selenate reductase subunit B [Bacillus selenatarsenatis]
          Length = 292

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C+H  C +VCP+   Y+ E+ +  I  D+CI C  C   CP  A
Sbjct: 137 PCMQCEHPPCTKVCPIGATYKSEDGIVAIDYDKCIGCRYCITACPYGA 184


>gi|255502227|gb|ACU11593.1| HydII [Thermoanaerobacterium saccharolyticum]
          Length = 436

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +     +    I  ++CIDCG C   CP  A
Sbjct: 11 DRCKGC--TNCIKRCPTEAIRVRDGKAKIIKEKCIDCGECVRVCPYHA 56


>gi|325205297|gb|ADZ00750.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M04-240196]
          Length = 279

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|323936373|gb|EGB32663.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
          Length = 926

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           YV    C  C    C+EVCP DC    + +++ I   +C  CG+C  ECP +AI
Sbjct: 322 YVDPRKCKGCG--KCLEVCPEDCIEAKKGYISMIDEFDCTKCGICIDECPNNAI 373



 Score = 40.5 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 21  CPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CP   C       + + P +C  CG C   CP D I+
Sbjct: 310 CPAGQCLAFTN--IYVDPRKCKGCGKCLEVCPEDCIE 344


>gi|293415744|ref|ZP_06658387.1| hydrogenase-4 component A [Escherichia coli B185]
 gi|291433392|gb|EFF06371.1| hydrogenase-4 component A [Escherichia coli B185]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|302528270|ref|ZP_07280612.1| formate dehydrogenase, beta subunit [Streptomyces sp. AA4]
 gi|302437165|gb|EFL08981.1| formate dehydrogenase, beta subunit [Streptomyces sp. AA4]
          Length = 276

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C P CP   I+
Sbjct: 96  SDVCKHCTHAACLDVCPTGALFRTEFDTVVVQQDICNGCGYCVPACPYGVIE 147


>gi|187251887|ref|YP_001876369.1| electron transfer flavoprotein subunit alpha [Elusimicrobium
          minutum Pei191]
 gi|186972047|gb|ACC99032.1| Electron transfer flavoprotein alpha subunit [Elusimicrobium
          minutum Pei191]
          Length = 397

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +  NCI C  T CV +CP            ++   C  CG C PECPV  I   ++
Sbjct: 4  IGSNCIGC--TKCVRICPFGALSMDGKKAVVN-SACTLCGACIPECPVKCISMPSQ 56


>gi|218778029|ref|YP_002429347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759413|gb|ACL01879.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 352

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E CI C    C E C +D     E+   ++PD CI CGVC  +CP DA+    +   
Sbjct: 273 VDDEKCIACG--ACAEACHMDAITV-EDAAFVNPDRCIGCGVCVSQCPSDAMAYQQKKQP 329

Query: 64  ELWL 67
           + ++
Sbjct: 330 DQYV 333


>gi|157377341|ref|YP_001475941.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319715|gb|ABV38813.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 231

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           V   C  C +  CV VCPV+  Y  E +  + I  +ECI C +C   CP  A
Sbjct: 84  VPNQCNQCDNPACVYVCPVEATYKREEDGIVVIDHEECIHCQLCVDACPYGA 135


>gi|15676135|ref|NP_273266.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|7225430|gb|AAF40665.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|316985127|gb|EFV64079.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           meningitidis H44/76]
 gi|325199417|gb|ADY94872.1| iron-sulfur cluster-binding protein [Neisseria meningitidis H44/76]
          Length = 279

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|257063357|ref|YP_003143029.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
 gi|256791010|gb|ACV21680.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
          Length = 425

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 6  TENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C++ ++ +     C   C   C    +N +AI  ++CI CG C   CP +AI P   
Sbjct: 23 AERCLMVRNRNARCNRCAAACVSGCINTHDNRIAIDAEKCIGCGTCATVCPTEAIAPRNP 82

Query: 61 PGLE 64
            LE
Sbjct: 83 DDLE 86


>gi|218700939|ref|YP_002408568.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI39]
 gi|218370925|emb|CAR18744.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI39]
          Length = 205

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|189485409|ref|YP_001956350.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170287368|dbj|BAG13889.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 57

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y + EN C+ C    C   CPV    + E+   I+ D+C  CGVCE  CPV AI
Sbjct: 1  MAYQINENACVGCG--ACAGSCPVSAIEQKEDKYTINSDKCKGCGVCESTCPVSAI 54



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I+ + C+ CG C   CPV AI+   +
Sbjct: 5  INENACVGCGACAGSCPVSAIEQKED 30


>gi|126460114|ref|YP_001056392.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249835|gb|ABO08926.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 229

 Score = 58.2 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++  C  C++T C  VCP    Y+ E  +  +  + CI CG C   CP  +        
Sbjct: 62  FISSLCYHCENTPCQRVCPTGATYKTEEGVVLVDKELCIGCGYCIVACPYGSRYRPEPHE 121

Query: 63  LEL 65
              
Sbjct: 122 WRE 124


>gi|323704276|ref|ZP_08115855.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum
          LX-11]
 gi|323536342|gb|EGB26114.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum
          LX-11]
          Length = 436

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +     +    I  ++CIDCG C   CP  A
Sbjct: 11 DRCKGC--TNCIKRCPTEAIRVRDGKAKIIKEKCIDCGECVRVCPYHA 56


>gi|303328543|ref|ZP_07358979.1| tetrathionate reductase complex, subunit B [Desulfovibrio sp.
           3_1_syn3]
 gi|302861374|gb|EFL84312.1| tetrathionate reductase complex, subunit B [Desulfovibrio sp.
           3_1_syn3]
          Length = 245

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  CK   C+ VCPV   Y+ +N +  I    CI CG C   CP DA
Sbjct: 95  CNHCKEPACLPVCPVKATYQHDNGIVVIDASACIGCGFCVQACPYDA 141


>gi|254805750|ref|YP_003083971.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254669291|emb|CBA08254.1| putative ferredoxin [Neisseria meningitidis alpha14]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|225376805|ref|ZP_03754026.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
 gi|225211301|gb|EEG93655.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
          Length = 375

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V TE CI C    C  +C        ++   I  D+C+ CG C   CP DAI  D
Sbjct: 191 VATEACIGCG--ACGRICAHGAPVITDHKAKIDHDKCVGCGRCLAVCPKDAISAD 243


>gi|226328967|ref|ZP_03804485.1| hypothetical protein PROPEN_02869 [Proteus penneri ATCC 35198]
 gi|225202153|gb|EEG84507.1| hypothetical protein PROPEN_02869 [Proteus penneri ATCC 35198]
          Length = 189

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            +T +C  C    C++VCP D + + E+ + +   D+CI C +C   CP +A   D
Sbjct: 55  FITMSCNHCDDPQCLKVCPADTYTKREDGIVVQDHDKCIGCQMCIMACPYNAPVYD 110


>gi|170729134|ref|YP_001763160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814481|gb|ACA89065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 560

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV  CP     +G +  A+H    +C+ CG+CE  CP  AI
Sbjct: 425 VNTQACTLCL--SCVSTCPTQALTDGGDKPALHFVEQDCVQCGLCESACPEKAI 476



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D     +  + I P  C   G C   CP  AI  D      L   ++      
Sbjct: 205 CLNFCPADAIQSIDKMIEIDPYLCHGAGSCTNACPTGAISYDLPTPQALHSYLHKLVTRF 264

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 265 REQAQIAPVI 274


>gi|307596268|ref|YP_003902585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551469|gb|ADN51534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 263

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  C++  CV VCP    Y+ +    + I+ + CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFHCRNPACVTVCPTGAIYKRKEDGVVVINYEVCIGCRYCENACPYGNIIFDP 129

Query: 60  EPGLELW--LKINSEYATQWP 78
             G+     + I+  Y    P
Sbjct: 130 VEGVSKKCVMAIDRIYDESLP 150


>gi|261368062|ref|ZP_05980945.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
 gi|282570052|gb|EFB75587.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
          Length = 368

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV  E C+ C    CV++C  D  +  +   +I  ++C+ CG C   CP DA++   + 
Sbjct: 190 PYVKQELCVGCG--RCVKICAHDAPHIVDRKSSIDQNKCVGCGRCIGVCPTDAVRAAEDE 247

Query: 62  GLELWLKIN---SEYAT 75
             ++   +N   +EY+ 
Sbjct: 248 SNDI---LNCKIAEYSK 261


>gi|154174046|ref|YP_001408940.1| formate dehydrogenase iron-sulfur subunit [Campylobacter curvus
           525.92]
 gi|112804000|gb|EAU01344.1| formate dehydrogenase iron-sulfur subunit [Campylobacter curvus
           525.92]
          Length = 190

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEPGL 63
           T  C  C    C +VCPVDCFY   + + +H   +CI C  C   CP  A +   +   
Sbjct: 53  TIACQHCTDAPCEQVCPVDCFYIRADGIVLHDKHKCIGCAYCLYACPFGAPQFPRDGAF 111


>gi|317492597|ref|ZP_07951024.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919347|gb|EFV40679.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 326

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D
Sbjct: 108 IKKQCMHCVDANCVSVCPVQALRKDPKTGIVHYDPDVCTGCRYCMVGCPFDVPKYD 163


>gi|298571367|gb|ADI87709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [uncultured
           Nitrospirae bacterium MY3-5B]
          Length = 266

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA-------IKPDT 59
            C+ C+   C EVCPV   ++  + +  I  D+CI C  C   CP  A          + 
Sbjct: 111 PCMQCELPPCTEVCPVGATWKRLDGVVAIDYDKCIGCRYCLSACPYGARTSDFNEYYTEN 170

Query: 60  EPGLELWLKI-NSEYATQWPNITTKKESLPSAAK 92
            P ++ +  + N+EY   W +   KK  + +A K
Sbjct: 171 TPKIQPYELLPNNEYGKAW-SRKDKKSPVGNARK 203


>gi|269216392|ref|ZP_06160246.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Slackia exigua ATCC 700122]
 gi|269130651|gb|EEZ61729.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Slackia exigua ATCC 700122]
          Length = 170

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C+EVCPV    + E+ + +   D CI C  C   CP DA   D + G
Sbjct: 41 PCQHCDTPSCIEVCPVGATSKREDGVVVVDKDICIGCASCVSACPYDARAIDADAG 96


>gi|257460510|ref|ZP_05625611.1| electron transport protein HydN [Campylobacter gracilis RM3268]
 gi|257441841|gb|EEV16983.1| electron transport protein HydN [Campylobacter gracilis RM3268]
          Length = 199

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP        N++ +H + CI C +C   CP  AI  + E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFDNNYIELHEEICIGCKMCTLACPYGAISSNAE 104


>gi|300867907|ref|ZP_07112547.1| XRE family transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334044|emb|CBN57723.1| XRE family transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 534

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-----CEPECPVDAI 55
          M+Y +T  CI C    C  +CP +     ++   I P+ C +C       C   CPV++ 
Sbjct: 1  MSYSITNRCIQCD--TCEPLCPTEAIKRKDDKYWIDPNLCDNCENYSAPQCVICCPVNSP 58

Query: 56 KP 57
           P
Sbjct: 59 VP 60



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 40 CIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
          CI C  CEP CP +AIK       + W+  N
Sbjct: 9  CIQCDTCEPLCPTEAIK---RKDDKYWIDPN 36


>gi|281601885|gb|ADA74869.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
          Length = 218

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|298346148|ref|YP_003718835.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii ATCC 43063]
 gi|304390092|ref|ZP_07372046.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315654727|ref|ZP_07907633.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii ATCC 51333]
 gi|298236209|gb|ADI67341.1| anaerobic dimethyl sulfoxide reductase, chain B [Mobiluncus
           curtisii ATCC 43063]
 gi|304326574|gb|EFL93818.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|315491191|gb|EFU80810.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii ATCC 51333]
          Length = 212

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C++  C+EVCP       E+  + +   +C+ C  C+  CP  A + + E
Sbjct: 67  AYYVSISCNHCEYPVCMEVCPTTAMSRREDGTVYVDESKCVGCRYCQWACPYGAPQLNPE 126

Query: 61  PGL 63
            G 
Sbjct: 127 TGH 129


>gi|170683521|ref|YP_001744664.1| hydrogenase-4 component A [Escherichia coli SMS-3-5]
 gi|170521239|gb|ACB19417.1| hydrogenase-4 component A [Escherichia coli SMS-3-5]
          Length = 205

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|159900206|ref|YP_001546453.1| cyclic nucleotide-binding protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893245|gb|ABX06325.1| cyclic nucleotide-binding protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 454

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +T++C  C+   +CVE CP       +N      D C  C  C   CP DA++  T
Sbjct: 335 ITQSCRQCRVGAECVEACPEAAIQWDDNGALRITDACTGCNECVLACPYDAVESQT 390


>gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM
           2380]
 gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 322

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI----K 56
            V+ NCI C    C+EVC      +   G   L I  D C  CG C   C   AI    +
Sbjct: 68  FVSNNCIGCG--KCLEVCKAGAIRKDETGAKGLIIDRDRCTLCGQCAKFCYAGAINIIGR 125

Query: 57  PDTEPGLELWLKINSEYATQ 76
             + P L   ++ + ++  Q
Sbjct: 126 YLSVPELVTMIERDRKFYEQ 145


>gi|77460730|ref|YP_350237.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77384733|gb|ABA76246.1| putative electron transpor-related protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 404

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            Y+    CI C  T C++ CP+D            I  DEC  C +C   CPVD I+
Sbjct: 74  AYIREAECIGC--TKCIQACPIDAIVGAAKLMHTVII-DECTGCDLCVAPCPVDCIE 127



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
               I   ECI C  C   CP+DAI
Sbjct: 71 PQVAYIREAECIGCTKCIQACPIDAI 96



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 103 MHTVIIDECTGCDL--CVAPCPVDCIEM 128


>gi|325145280|gb|EGC67558.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240013]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDESACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|317406714|gb|EFV86874.1| tetrathionate reductase subunit B [Achromobacter xylosoxidans C54]
          Length = 255

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ CG C   CP DA  I  DT+   +
Sbjct: 111 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHDTQTADK 169


>gi|253690638|ref|YP_003019828.1| glutamate synthase, small subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757216|gb|ACT15292.1| glutamate synthase, small subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 674

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNP 108


>gi|220925117|ref|YP_002500419.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949724|gb|ACL60116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+EVCP        + +A+ P  C  CG C   CP  A      P  
Sbjct: 284 TRCLEVCPTGAIAPAGDHVAVDPFVCAGCGACASVCPTGAAAYTLPPAD 332



 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C LC    CV  CP     +  +   L      C+ CG+C   CP D I  +     
Sbjct: 521 TEACTLC--HACVGACPTSALSDDPDRPVLTFSESLCVQCGLCAATCPEDVITLEPRLDF 578

Query: 64  ELWLK 68
             W  
Sbjct: 579 AAWAA 583



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 22  PVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           PVD            L    + C  C  C   CP  A+  D +  +  + +
Sbjct: 502 PVDRIALDPGAPFGGLVFRTEACTLCHACVGACPTSALSDDPDRPVLTFSE 552


>gi|85859306|ref|YP_461508.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722397|gb|ABC77340.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 346

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C    CVEVCP      G++ L     + CI C  C   CP  A+K   E    +
Sbjct: 197 EKCTKCG--TCVEVCPTGAAQFGDDGLPFYDHEVCIGCAQCIGFCPALALKIHWETDAAV 254

Query: 66  WLKINSE-YATQWPNITTK 83
           + +   E  A  W  I  +
Sbjct: 255 FQEKLVETAAAVWRQIEGR 273



 Score = 37.1 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTE 60
           P++C  CG C   CP  A +   +
Sbjct: 196 PEKCTKCGTCVEVCPTGAAQFGDD 219


>gi|116754868|ref|YP_843986.1| methyl-viologen-reducing hydrogenase, delta subunit [Methanosaeta
           thermophila PT]
 gi|116666319|gb|ABK15346.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta
           thermophila PT]
          Length = 791

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI C    CV+ CP       ++   +    C  CG C   CPVDAI+     
Sbjct: 577 AFVDRDKCIGC--RLCVDTCPSRAISV-KDTAFVDEARCKGCGTCAAACPVDAIEMRLFS 633

Query: 62  GLELWLKINSE 72
             ++  +I + 
Sbjct: 634 DEQILAQIRAA 644



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 19/79 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENFLA-------------IHPDECIDCG 44
           YV    C  C + +C   CPV+   E     G+                 I  + CI CG
Sbjct: 242 YVDPTLCKGCIN-ECSSACPVEVPNEYDFGLGKRKAIYMAIPQSVPLVACIDTNACIGCG 300

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   CP DA+K D +   
Sbjct: 301 LCAEACPADAVKYDQQAEE 319



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
                    +  D+CI C +C   CP  AI
Sbjct: 570 IELDPTVAFVDRDKCIGCRLCVDTCPSRAI 599


>gi|294649835|ref|ZP_06727237.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824318|gb|EFF83119.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 267

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI--KPDTEP 61
           + CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I   PDT+P
Sbjct: 94  DECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCIDLIPDTKP 149



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 91  IREDECIGCTKCISACPVDAI 111


>gi|170717615|ref|YP_001784697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haemophilus somnus 2336]
 gi|168825744|gb|ACA31115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haemophilus
           somnus 2336]
          Length = 245

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV+VCPV   Y+ ++ +  I    CI C  C   CP DA  I  +T+   +
Sbjct: 99  CNHCDNPPCVQVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSETKTADK 157


>gi|90021997|ref|YP_527824.1| aspartate carbamoyltransferase [Saccharophagus degradans 2-40]
 gi|89951597|gb|ABD81612.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 615

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C  C+   C++ CP   + +   +   I  PD C  CG C   CP +A + D   G
Sbjct: 109 ISMACNHCEEPVCLKGCPTRAYTKHPEYGAVIQDPDICFGCGYCTWVCPYNAPQLDPVAG 168

Query: 63  L 63
            
Sbjct: 169 Q 169


>gi|157161943|ref|YP_001459261.1| hydrogenase-4 component A [Escherichia coli HS]
 gi|191167653|ref|ZP_03029463.1| hydrogenase-4 component A [Escherichia coli B7A]
 gi|193068427|ref|ZP_03049390.1| hydrogenase-4 component A [Escherichia coli E110019]
 gi|209919956|ref|YP_002294040.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218696110|ref|YP_002403777.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli 55989]
 gi|293446836|ref|ZP_06663258.1| hyfA [Escherichia coli B088]
 gi|312973284|ref|ZP_07787456.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331669220|ref|ZP_08370068.1| hydrogenase-4 component A [Escherichia coli TA271]
 gi|157067623|gb|ABV06878.1| hydrogenase-4 component A [Escherichia coli HS]
 gi|190902333|gb|EDV62072.1| hydrogenase-4 component A [Escherichia coli B7A]
 gi|192958379|gb|EDV88819.1| hydrogenase-4 component A [Escherichia coli E110019]
 gi|209913215|dbj|BAG78289.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218352842|emb|CAU98637.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli 55989]
 gi|291323666|gb|EFE63094.1| hyfA [Escherichia coli B088]
 gi|310331879|gb|EFP99114.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|323944700|gb|EGB40767.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|331064414|gb|EGI36325.1| hydrogenase-4 component A [Escherichia coli TA271]
          Length = 205

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|325129008|gb|EGC51858.1| iron-sulfur cluster-binding protein [Neisseria meningitidis N1568]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|82777863|ref|YP_404212.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
 gi|81242011|gb|ABB62721.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 218

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|89109287|ref|AP_003067.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          W3110]
 gi|90111444|ref|NP_416976.4| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|170082091|ref|YP_001731411.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238901646|ref|YP_002927442.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BW2952]
 gi|256021833|ref|ZP_05435698.1| hydrogenase 4, 4Fe-4S subunit [Escherichia sp. 4_1_40B]
 gi|301023842|ref|ZP_07187575.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|307139115|ref|ZP_07498471.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli H736]
 gi|140645|sp|P23481|HYFA_ECOLI RecName: Full=Hydrogenase-4 component A
 gi|147018|gb|AAB88563.1| HyfA [Escherichia coli]
 gi|1799909|dbj|BAA16359.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K12 substr.
          W3110]
 gi|87082114|gb|AAC75534.2| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|169889926|gb|ACB03633.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|238861459|gb|ACR63457.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli BW2952]
 gi|260448440|gb|ACX38862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli DH1]
 gi|299880642|gb|EFI88853.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|315137104|dbj|BAJ44263.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli DH1]
 gi|315615724|gb|EFU96356.1| hydrogenase-4 component A [Escherichia coli 3431]
          Length = 205

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|206896460|ref|YP_002247481.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate
           ferredoxin oxidoreductase subunit alpha)
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206739077|gb|ACI18155.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate
           ferredoxin oxidoreductase subunit alpha)
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 638

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 7   ENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C  C    CV +  CP   F   +  ++I  D C  C  C   CP +AI   +  G +
Sbjct: 560 EKCTGC--RVCVNLLGCPALVFDRDKKKVSIDEDLCAGCSACAQVCPYNAIYEKSIEGEK 617

Query: 65  LWLKINSEYATQW 77
            +  ++ E   +W
Sbjct: 618 NFDVVSDESRARW 630


>gi|217968807|ref|YP_002354041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506134|gb|ACK53145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 222

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            Y V  +C  C    C+  CP        +N +  I    CI C  CE  CP  A + D
Sbjct: 78  AYKVNMSCNHCADPACLPTCPTGAIWKRADNGVVDIDSTLCIGCRRCEAACPYGAPQWD 136


>gi|162456775|ref|YP_001619142.1| putative anaerobic reductase component [Sorangium cellulosum 'So ce
           56']
 gi|161167357|emb|CAN98662.1| putative anaerobic reductase component [Sorangium cellulosum 'So ce
           56']
          Length = 580

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C    C+  CPV  + +     +  H  D+CI C  C   CP DA K + E G
Sbjct: 127 VTTACHHCLDPACMSGCPVKAYEKDPITGIVKHLDDQCIGCQYCILMCPYDAPKFNAERG 186


>gi|296313314|ref|ZP_06863255.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296840194|gb|EFH24132.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|218265299|ref|ZP_03478757.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221524|gb|EEC94174.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii
           DSM 18315]
          Length = 252

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C++  C++VCPV      ++ +   P  CI C  C  ECP  A   DT 
Sbjct: 182 DLCTQCEY--CIDVCPVSAISIVDDRMFSDPATCIKCCACVKECPEGARTFDTP 233



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
               D C  C  C   CPV AI    +
Sbjct: 178 VTDEDLCTQCEYCIDVCPVSAISIVDD 204


>gi|304389020|ref|ZP_07371066.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
 gi|304337001|gb|EFM03189.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|261391743|emb|CAX49192.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|325197493|gb|ADY92949.1| iron-sulfur cluster-binding protein [Neisseria meningitidis G2136]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|254670133|emb|CBA05130.1| putative ferredoxin [Neisseria meningitidis alpha153]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           ++ +TE CI C    C   CP +C   GE  +   I   +C+ CG CE  C  +AI
Sbjct: 538 SFFITEKCIGCG--ACARQCPANCIT-GEKKMRHTIEQSKCLKCGACETTCKFNAI 590



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           ++CI CG C  +CP + I  + +
Sbjct: 543 EKCIGCGACARQCPANCITGEKK 565


>gi|330811333|ref|YP_004355795.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379441|gb|AEA70791.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 341

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  I  DEC  C +C   CPVD I+
Sbjct: 74  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTILIDECTGCDLCVAPCPVDCIE 127


>gi|313672549|ref|YP_004050660.1| electron transport complex, rnfabcdge type, b subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939305|gb|ADR18497.1| electron transport complex, RnfABCDGE type, B subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 260

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI CK   C + CPVD      N   I P++CI+CG C+  CP  AI
Sbjct: 212 ACIACKL--CQKNCPVDAITVENNLAYIDPNKCINCGKCKEVCPTKAI 257



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6   TENCI-LC-KHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           T+ CI  C     CV  C  D  Y G   + I   ++C  CG C   CP   I+
Sbjct: 131 TKQCIYGCVGGGSCVTACKFDAIYIGNEGIPIVDAEKCTACGACVKACPRKLIE 184



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 18/71 (25%)

Query: 4   VVTENCILCKHTDCVEVCP--------------VDC--FYEGENFLAIHPDECIDCGVCE 47
           V  E C  C    CV+ CP              V C    +G +        CI C +C+
Sbjct: 163 VDAEKCTACG--ACVKACPRKLIEIVPVDKRFTVTCRSIDKGVDAKNFCKVACIACKLCQ 220

Query: 48  PECPVDAIKPD 58
             CPVDAI  +
Sbjct: 221 KNCPVDAITVE 231


>gi|262045103|ref|ZP_06018139.1| anaerobic dimethyl sulfoxide reductase [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259037550|gb|EEW38785.1| anaerobic dimethyl sulfoxide reductase [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 164

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 19 AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 78

Query: 61 PGL 63
           G 
Sbjct: 79 KGH 81


>gi|121634081|ref|YP_974326.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|120865787|emb|CAM09516.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|325133026|gb|EGC55699.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M6190]
 gi|325139098|gb|EGC61644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           ES14902]
          Length = 279

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|20091692|ref|NP_617767.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
 gi|41017214|sp|Q8TM02|HDRA_METAC RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|19916866|gb|AAM06247.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
          Length = 793

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V  + CI C    CVEVC             +    C  CG C   CPV AI+
Sbjct: 573 AHVDPDKCIGC--RTCVEVCKFGKISIENKKAVVDEVSCYGCGDCSAACPVGAIQ 625



 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 19/84 (22%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYE-----GENFLAIHPDECIDCG 44
           +V+ + C  C    C  VCPV+               Y          + I PD C+ CG
Sbjct: 237 FVLEDKCKGCVDL-CSGVCPVEIENPMNYGIGKTRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
           +C+  CP +A+  + +P    +  
Sbjct: 296 LCQLACPAEAVDYEQKPEEIEFEA 319



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPD 58
            + PD+CI C  C   C    I  +
Sbjct: 574 HVDPDKCIGCRTCVEVCKFGKISIE 598


>gi|320640865|gb|EFX10353.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           G5101]
          Length = 209

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|302387337|ref|YP_003823159.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
          saccharolyticum WM1]
 gi|302197965|gb|ADL05536.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
          saccharolyticum WM1]
          Length = 393

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V+ E C  C  + CV+ CP D     EN LA+    C  CGVC  +CP DAI
Sbjct: 5  VIKEKCRGC--SICVKNCPFDAITM-ENKLAVIGTACTGCGVCVEKCPFDAI 53


>gi|225018512|ref|ZP_03707704.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
 gi|224948713|gb|EEG29922.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
          Length = 203

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +T++CI C    C  +CP  C   G     I    C+ CG+C+ +CPV AI+
Sbjct: 149 FQITDSCIECG--RCRRICPQQCIEPGSP-YVIRQQNCLHCGLCQEQCPVQAIE 199



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           D CI+CG C   CP   I+P + 
Sbjct: 153 DSCIECGRCRRICPQQCIEPGSP 175


>gi|160939954|ref|ZP_02087300.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437098|gb|EDP14864.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
          Length = 427

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENF---LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + C+ C    C + CPV      EGEN      +  D C+ CGVC+  C V AI  +  
Sbjct: 292 GDQCVGCG--KCAKTCPVLAISMEEGENGRKRAVVDKDICLGCGVCDRNCGVKAIHMERR 349

Query: 61  PGL 63
              
Sbjct: 350 TEQ 352


>gi|118431940|ref|NP_148720.2| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Aeropyrum pernix K1]
 gi|116063262|dbj|BAA81623.2| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Aeropyrum pernix K1]
          Length = 233

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V + C  C +  CV+VCPV   Y  E+ +  +  D CI CG C   CP  A
Sbjct: 101 VPKQCNHCDNPSCVDVCPVKATYVNEDGIVLVDDDLCIGCGACIQNCPYGA 151


>gi|322832179|ref|YP_004212206.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
 gi|321167380|gb|ADW73079.1| dimethylsulfoxide reductase, chain B [Rahnella sp. Y9602]
          Length = 205

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ ++ D CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCADPACTKVCPSGAMHKREDGFVVVNEDICIGCRYCHMACPYGAPQYNEA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|284007051|emb|CBA72326.1| glutamate synthase (NADPH) small chain [Arsenophonus nasoniae]
          Length = 603

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +   C  C +  C+  CPVD        + +  + CI C  C   CP  AI
Sbjct: 52  IAVTCRHCNNAPCITSCPVDALRFVSATVQLDQNRCIGCKSCIIACPFGAI 102



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 31 NFLAI-HPDECIDCGVCEPEC 50
          N + I  P ECI C VCE  C
Sbjct: 2  NKMIIADPSECIGCHVCEIAC 22


>gi|157165183|ref|YP_001467594.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           concisus 13826]
 gi|157101508|gb|EAT98488.2| selenate reductase subunit beta (Selenate reductaseiron-sulfur
           subunit) [Campylobacter concisus 13826]
          Length = 245

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C++VCP    Y+  N +  I   ECI C +C   CP  A
Sbjct: 94  CNHCNKPACIDVCPTGASYQRSNGIVKIDTKECIGCALCVEACPYHA 140


>gi|153879377|ref|ZP_02004810.1| Ferredoxin [Beggiatoa sp. PS]
 gi|152064159|gb|EDN65190.1| Ferredoxin [Beggiatoa sp. PS]
          Length = 93

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +T+ CI C    C   CP     +GE    I P+ C +C        C   CPVD 
Sbjct: 7  MALYITDECINCDV--CEPECPNGAISQGEEIYIIDPNLCTECVGHYETSQCVDVCPVDC 64

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I P      E   K+  +Y      +T KK
Sbjct: 65 I-PKDPNHEESEEKLREKYYRLTKELTDKK 93


>gi|24113810|ref|NP_708320.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30063859|ref|NP_838030.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110806414|ref|YP_689934.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|24052897|gb|AAN44027.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30042114|gb|AAP17840.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110615962|gb|ABF04629.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|313650937|gb|EFS15337.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|332755122|gb|EGJ85487.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332755521|gb|EGJ85885.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332756570|gb|EGJ86921.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332766287|gb|EGJ96497.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71]
 gi|333001869|gb|EGK21435.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333016253|gb|EGK35584.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 205

 Score = 58.2 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|320180465|gb|EFW55396.1| Hydrogenase-4 component A [Shigella boydii ATCC 9905]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|300921411|ref|ZP_07137771.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|331653906|ref|ZP_08354907.1| hydrogenase-4 component A [Escherichia coli M718]
 gi|300411645|gb|EFJ94955.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|331048755|gb|EGI20831.1| hydrogenase-4 component A [Escherichia coli M718]
          Length = 218

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|254673479|emb|CBA08875.1| putative ferredoxin [Neisseria meningitidis alpha275]
          Length = 279

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDESACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|283832972|ref|ZP_06352713.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
 gi|291071579|gb|EFE09688.1| dimethylsulfoxide reductase, chain B [Citrobacter youngae ATCC
           29220]
          Length = 210

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 72  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQMNE 131

Query: 60  EPGL 63
           E G 
Sbjct: 132 EAGQ 135


>gi|227113131|ref|ZP_03826787.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 626

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P     + 
Sbjct: 56  CRHCEDAPCASVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTSPVDNSTIA 115

Query: 69  INSEYATQWP 78
              +     P
Sbjct: 116 HKCDLCADRP 125


>gi|269798297|ref|YP_003312197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
 gi|282850535|ref|ZP_06259914.1| ferredoxin [Veillonella parvula ATCC 17745]
 gi|294792160|ref|ZP_06757308.1| conserved domain protein [Veillonella sp. 6_1_27]
 gi|294794025|ref|ZP_06759162.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|269094926|gb|ACZ24917.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
 gi|282580028|gb|EFB85432.1| ferredoxin [Veillonella parvula ATCC 17745]
 gi|294455595|gb|EFG23967.1| conserved domain protein [Veillonella sp. 3_1_44]
 gi|294457390|gb|EFG25752.1| conserved domain protein [Veillonella sp. 6_1_27]
          Length = 54

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    C  VCPV C  EGE    I  D CIDCG CE  CPV  I  +
Sbjct: 3  VIADGCIKCG--SCASVCPVSCITEGETKYEIG-DACIDCGSCESVCPVSVISAE 54


>gi|325141137|gb|EGC63638.1| iron-sulfur cluster-binding protein [Neisseria meningitidis CU385]
          Length = 279

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDESACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|220916973|ref|YP_002492277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954827|gb|ACL65211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 731

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+  C+ C+   C   CPV   ++ E+        +CI C  C   CP      + +
Sbjct: 72  YVSTKRQCMHCEEPACAAACPVTALHKTESGAVAYDASKCIGCRYCMWACPFGVPTAEWD 131


>gi|197122197|ref|YP_002134148.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172046|gb|ACG73019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 731

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+  C+ C+   C   CPV   ++ E+        +CI C  C   CP      + +
Sbjct: 72  YVSTKRQCMHCEEPACAAACPVTALHKTESGAVAYDASKCIGCRYCMWACPFGVPTAEWD 131


>gi|78184657|ref|YP_377092.1| ferredoxin [Synechococcus sp. CC9902]
 gi|78168951|gb|ABB26048.1| ferredoxin [Synechococcus sp. CC9902]
          Length = 74

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +V+E C      DCV+ CPV C         +G +F  I+ D CIDCG+C   CPV
Sbjct: 1  MAHTIVSEVCEGI--ADCVDACPVACIDQGSGKNSKGTDFYVINFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAILAEERPDLQK 72


>gi|33865811|ref|NP_897370.1| ferredoxin [Synechococcus sp. WH 8102]
 gi|33632981|emb|CAE07792.1| ferredoxin [Synechococcus sp. WH 8102]
          Length = 74

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C  +G+       +F  I+ D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGI--ADCVDACPVACIDQGQGKNKKGTDFYWINFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAILAEERPDLQK 72


>gi|329998255|ref|ZP_08303009.1| dimethylsulfoxide reductase, chain B [Klebsiella sp. MS 92-3]
 gi|328538797|gb|EGF64875.1| dimethylsulfoxide reductase, chain B [Klebsiella sp. MS 92-3]
          Length = 191

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + + +
Sbjct: 46  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNAD 105

Query: 61  PGL 63
            G 
Sbjct: 106 KGH 108


>gi|300922185|ref|ZP_07138322.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300421500|gb|EFK04811.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
          Length = 218

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|293404203|ref|ZP_06648197.1| DmsB protein [Escherichia coli FVEC1412]
 gi|291428789|gb|EFF01814.1| DmsB protein [Escherichia coli FVEC1412]
          Length = 148

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A + +  
Sbjct: 3  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNET 62

Query: 61 PGL 63
           G 
Sbjct: 63 KGH 65


>gi|114046018|ref|YP_736568.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113887460|gb|ABI41511.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 188

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHSDKCVGCMYCVAACPY 104


>gi|319411308|emb|CBY91719.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325130942|gb|EGC53669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           OX99.30304]
 gi|325135016|gb|EGC57644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M13399]
 gi|325137038|gb|EGC59634.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M0579]
 gi|325202960|gb|ADY98414.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240149]
 gi|325207242|gb|ADZ02694.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           NZ-05/33]
          Length = 279

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|308388428|gb|ADO30748.1| putative ferredoxin [Neisseria meningitidis alpha710]
          Length = 279

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|148244921|ref|YP_001219615.1| intracellular sulfur oxidation protein DsrO [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326748|dbj|BAF61891.1| intracellular sulfur oxidation protein DsrO [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 243

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV+VCP +   + E+ +  +    CI C  C   CP DA
Sbjct: 109 CQHCEEPPCVDVCPTNASMKREDGIVLVDKHLCIGCRYCMMACPYDA 155


>gi|218767102|ref|YP_002341614.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051110|emb|CAM07381.1| putative ferredoxin [Neisseria meningitidis Z2491]
          Length = 279

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|120600350|ref|YP_964924.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560443|gb|ABM26370.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|319424953|gb|ADV53027.1| sulfur reductase, FeS subunit, PhsB [Shewanella putrefaciens 200]
          Length = 188

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHADKCVGCMYCVAACPY 104


>gi|331664038|ref|ZP_08364948.1| hydrogenase-4 component A [Escherichia coli TA143]
 gi|331059837|gb|EGI31814.1| hydrogenase-4 component A [Escherichia coli TA143]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|194432127|ref|ZP_03064416.1| hydrogenase-4 component A [Shigella dysenteriae 1012]
 gi|194419656|gb|EDX35736.1| hydrogenase-4 component A [Shigella dysenteriae 1012]
 gi|332087922|gb|EGI93047.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|187730471|ref|YP_001881273.1| hydrogenase-4 component A [Shigella boydii CDC 3083-94]
 gi|187427463|gb|ACD06737.1| hydrogenase-4 component A [Shigella boydii CDC 3083-94]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|325203327|gb|ADY98780.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240355]
          Length = 279

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVIADECTGCGLCVAPCPVDCIH 125



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC + 
Sbjct: 101 MHTVIADECTGCGL--CVAPCPVDCIHM 126


>gi|114770214|ref|ZP_01447752.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114549051|gb|EAU51934.1| iron-sulfur cluster-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 248

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGARELD 133


>gi|89896878|ref|YP_520365.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336326|dbj|BAE85921.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 231

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           YV T  C  C    CV  CP    Y+ +  L +H P++CI C  C   CP + I  + + 
Sbjct: 53  YVPT-LCNHCDQAACVRACPTKAMYKDDKGLTLHNPNKCIGCKSCMLACPYEVINYNAKE 111

Query: 62  GLELW 66
               W
Sbjct: 112 PHGHW 116


>gi|116622139|ref|YP_824295.1| formate dehydrogenase subunit beta [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225301|gb|ABJ84010.1| formate dehydrogenase beta subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 286

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPDTEPG 62
           ++ C  C    C+E CP       E + + + PD C  CG C   CP   I   PD    
Sbjct: 102 SDVCKHCARAGCLESCPTGAIIRTEFDSVYVQPDICNGCGYCVINCPFGVIDRSPDDGRA 161

Query: 63  LE 64
            +
Sbjct: 162 WK 163


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           YVV  E C  C    C  +CPV      +     I P++C  CG C   C  DA+
Sbjct: 542 YVVMPELCRGCGL--CARMCPVGAITGAKKEPYVIDPEKCTKCGTCMDVCKFDAV 594


>gi|320183165|gb|EFW58023.1| Anaerobic dimethyl sulfoxide reductase chain B [Shigella flexneri
           CDC 796-83]
 gi|332097171|gb|EGJ02154.1| anaerobic dimethyl sulfoxide reductase chain B domain protein
           [Shigella boydii 3594-74]
          Length = 122

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ E+ F+ +  D CI C  C   CP  A+     
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGALNRPGN 119

Query: 61  PGL 63
           PG 
Sbjct: 120 PGD 122


>gi|293405917|ref|ZP_06649909.1| hydrogenase-4 component A [Escherichia coli FVEC1412]
 gi|298381665|ref|ZP_06991264.1| hydrogenase-4 component A [Escherichia coli FVEC1302]
 gi|300897640|ref|ZP_07116044.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|291428125|gb|EFF01152.1| hydrogenase-4 component A [Escherichia coli FVEC1412]
 gi|298279107|gb|EFI20621.1| hydrogenase-4 component A [Escherichia coli FVEC1302]
 gi|300358616|gb|EFJ74486.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
          Length = 218

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|254262256|emb|CAZ90582.1| Anaerobic dimethyl sulfoxide reductase chain B dmsB [Enterobacter
           helveticus]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + + +
Sbjct: 60  AYYLSISCNHCADPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNAQ 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|226940402|ref|YP_002795476.1| tetrathionate reductase subunit B [Laribacter hongkongensis HLHK9]
 gi|226715329|gb|ACO74467.1| putative tetrathionate reductase subunit B [Laribacter
           hongkongensis HLHK9]
          Length = 239

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           TY++   C  C +  C+ VCPV   F + +  + +  + C+ C  C   CP DA
Sbjct: 88  TYMLPRLCNHCANPPCIPVCPVGATFQQADGTVVVDGERCVGCAYCVQACPYDA 141


>gi|209527856|ref|ZP_03276346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrospira
          maxima CS-328]
 gi|209491713|gb|EDZ92078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arthrospira
          maxima CS-328]
          Length = 75

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV  CPV C + G        ++  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGV--ADCVGACPVACIHPGPGKNTKGTDWYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAIVAEERPELQQ 72


>gi|74313007|ref|YP_311426.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|301329002|ref|ZP_07222029.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|73856484|gb|AAZ89191.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|300844636|gb|EFK72396.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
          Length = 218

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|167037871|ref|YP_001665449.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320116288|ref|YP_004186447.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166856705|gb|ABY95113.1| Fe-S cluster domain protein [Thermoanaerobacter pseudethanolicus
          ATCC 33223]
 gi|319929379|gb|ADV80064.1| Fe-S cluster domain protein [Thermoanaerobacter brockii subsp.
          finnii Ako-1]
          Length = 435

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 1  MTYV--VT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y   VT   + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|325473842|gb|EGC77030.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           F0402]
          Length = 500

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++T  C  C    C+  CP            I  ++CI+CG+C   CP  A+
Sbjct: 120 YMITNACQACVARPCMMNCPKTAIAISGGRSRIDEEKCINCGICLKNCPYHAV 172



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 15/63 (23%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           E CI C                  C E CPV    + EN    I   +CI CG C  ECP
Sbjct: 155 EKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMRECP 214

Query: 52  VDA 54
             A
Sbjct: 215 FGA 217


>gi|311279455|ref|YP_003941686.1| tetrathionate reductase subunit B [Enterobacter cloacae SCF1]
 gi|308748650|gb|ADO48402.1| tetrathionate reductase subunit B [Enterobacter cloacae SCF1]
          Length = 249

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   F   +  + I    C+ C  C   CP DA  I  DT+   +
Sbjct: 100 CNHCDSPPCVPVCPVQATFQRKDGIVVIDNTRCVGCAYCVQACPYDARFINHDTQTADK 158


>gi|296127647|ref|YP_003634899.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563]
 gi|296019463|gb|ADG72700.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563]
          Length = 490

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++VT  C  C    C+  CP D      E    I   +CI+CG+C   CP  AI
Sbjct: 112 FMVTNACQACLARPCLVNCPKDAITILDEKRAHIDSSKCINCGLCLKNCPYHAI 165



 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 20/93 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            ++ +  CI C                  C E CPV    + E     I   +CI CG C
Sbjct: 143 AHIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNC 202

Query: 47  EPECPVDAIKP-----DTEPGLELWLKINSEYA 74
             ECP  A+       D    L+   K+N  YA
Sbjct: 203 MRECPFSAMMDKGQLVDVLKHLKEDKKVNVMYA 235


>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
 gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
          Length = 635

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +  E CI C    C + CP D           I+PD+CI CG+C   C   AI
Sbjct: 578 LTYTINPELCIGC--HLCFKHCPADAILGDVRKPHVINPDKCIKCGMCMARCKFKAI 632



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I+P+ CI C +C   CP DAI  D     
Sbjct: 580 YTINPELCIGCHLCFKHCPADAILGDVRKPH 610


>gi|89893295|ref|YP_516782.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332743|dbj|BAE82338.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 201

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCPV   ++ E   + + PD+CI C  C   CP DA   + E G+  
Sbjct: 63  CNQCQDAPCQTVCPVKATHKDEGGVIVVDPDKCIGCRYCIAACPYDARFLNKETGMAE 120


>gi|228470307|ref|ZP_04055211.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis
           60-3]
 gi|228308050|gb|EEK16925.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis
           60-3]
          Length = 492

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y V+  C  C    C   CP  C  ++      I  D CI CG C   CP  AI  
Sbjct: 108 YEVSNLCRGCVSRACSSNCPKSCISFQKNGQAQIDHDVCISCGQCHKNCPYHAIVY 163



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 144 DVCISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCLNACP 203

Query: 52  VDAIKP 57
             AI  
Sbjct: 204 FGAIFE 209


>gi|323141624|ref|ZP_08076506.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
 gi|322413889|gb|EFY04726.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT
          12067]
          Length = 459

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELW 66
          C  C    CV++CP +          I  D CIDCG C   CP  A  +K DT  GL  +
Sbjct: 19 CQGC--VSCVKLCPTEAIRVRNGKAEILGDRCIDCGACAAGCPYHAFNVKTDTLEGLADY 76


>gi|307323188|ref|ZP_07602398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306890677|gb|EFN21653.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 341

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  D  P  
Sbjct: 150 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQDDICNGCGYCVPACPYGVI--DVRPED 206


>gi|257437704|ref|ZP_05613459.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257200011|gb|EEU98295.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 56

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCG--ACEGACPVGAVTIENGVAVVNADACIDCGACEGACPTGAIAAE 56


>gi|159043786|ref|YP_001532580.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911546|gb|ABV92979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 248

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREMDAAAG 137


>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
 gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
          Length = 628

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++++ E C  C  + C   CPV     + +    I  ++CI CG CE  C   AI  +
Sbjct: 572 FIISAERCKGC--SKCARNCPVGAISGQIKEPYVIDNEKCIKCGACESACAFGAIHIE 627



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV + C+     +C  +              I  + C  C  C   CPV AI
Sbjct: 555 HVVEKKCVS---HNCTAM----------RQFIISAERCKGCSKCARNCPVGAI 594


>gi|323170257|gb|EFZ55910.1| hydrogenase-4 component A [Escherichia coli LT-68]
          Length = 200

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 46 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 92


>gi|266623462|ref|ZP_06116397.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
 gi|288864757|gb|EFC97055.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
          Length = 203

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T++CI C    C E CP  C   G     I    C+ CG+C+  CPV A+
Sbjct: 149 YFITDDCIGCGQ--CTESCPQKCIAPGVP-CRIDGSHCLRCGLCQEVCPVGAV 198



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
               D+CI CG C   CP   I P   
Sbjct: 149 YFITDDCIGCGQCTESCPQKCIAPGVP 175


>gi|86158509|ref|YP_465294.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775020|gb|ABC81857.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 731

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           YV T+  C+ C+   C   CPV   ++ E+        +CI C  C   CP      + +
Sbjct: 72  YVSTKRQCMHCEEPACAAACPVTALHKTESGAVAYDASKCIGCRYCMWACPFGVPTAEWD 131


>gi|333002267|gb|EGK21831.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333016088|gb|EGK35420.1| hydrogenase-4 component A [Shigella flexneri K-227]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|323967925|gb|EGB63337.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327252131|gb|EGE63803.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
          Length = 205

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|300957169|ref|ZP_07169404.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300316013|gb|EFJ65797.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
          Length = 213

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|300728139|ref|ZP_07061510.1| nitroreductase family protein [Prevotella bryantii B14]
 gi|299774565|gb|EFI71186.1| nitroreductase family protein [Prevotella bryantii B14]
          Length = 269

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIKP 57
          T+ CI+C    C +VCP   F + E         P+ CIDCG C   CP  +I+ 
Sbjct: 8  TDTCIMCG--KCTQVCPPHIFMQREKKTPIRVFKPERCIDCGHCVDVCPTHSIEH 60



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 35 IHPDECIDCGVCEPECP 51
          I+ D CI CG C   CP
Sbjct: 6  INTDTCIMCGKCTQVCP 22


>gi|292670527|ref|ZP_06603953.1| formate dehydrogenase beta subunit [Selenomonas noxia ATCC 43541]
 gi|292647937|gb|EFF65909.1| formate dehydrogenase beta subunit [Selenomonas noxia ATCC 43541]
          Length = 273

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C    C + CP +     EN  + I+ D+C+ C  CE  CP    K D 
Sbjct: 76  NCFHCGDPACAKGCPENAIDRNENGTVVINQDKCVGCHYCEHNCPWHIPKIDD 128


>gi|146291718|ref|YP_001182142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563408|gb|ABP74343.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 188

 Score = 57.9 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHADKCVGCMYCVAACPY 104


>gi|284161789|ref|YP_003400412.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011786|gb|ADB57739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 185

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +   C+ C    CV+VCP+   Y+ E+ +  +  D CI CG C   CP  A +   
Sbjct: 52  IPLMCLHCNDPLCVKVCPMKAVYKREDGIVLVDKDRCIGCGYCAFACPFGAPQFPE 107


>gi|253999507|ref|YP_003051570.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. SIP3-4]
 gi|253986186|gb|ACT51043.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. SIP3-4]
          Length = 299

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I     
Sbjct: 113 AFIDEQTCIGC--TLCIQACPVDAILGASKQMHTVIADECTGCELCIAPCPVDCITMQPP 170

Query: 61  P 61
           P
Sbjct: 171 P 171



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C+   C+  CPVDC   
Sbjct: 142 MHTVIADECTGCEL--CIAPCPVDCITM 167


>gi|256826506|ref|YP_003150465.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582649|gb|ACU93783.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 206

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           Y V+ +C  C +  C  VCP    ++      ++++ D+CI CG C   CP +A K D
Sbjct: 61  YHVSVSCNHCDNPACTGVCPTGAMHKNPETGLVSVNTDKCIGCGYCHMACPYNAPKVD 118


>gi|333001614|gb|EGK21182.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|323977341|gb|EGB72427.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|320176273|gb|EFW51334.1| Hydrogenase-4 component A [Shigella dysenteriae CDC 74-1112]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|324118175|gb|EGC12072.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCPV C          I   EC+ CG C   C   AI   T
Sbjct: 543 SYVIDPEKCVGC--TACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVT 600

Query: 60  EP 61
             
Sbjct: 601 PA 602


>gi|281358774|ref|ZP_06245249.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC
          BAA-548]
 gi|281314729|gb|EFA98767.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC
          BAA-548]
          Length = 582

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    CV  CPV      +   A+ P+ C+ CG C   CPV A
Sbjct: 8  YTIEAECQDC--YKCVRHCPVKAIRVRDGHAAVIPELCVACGKCVEVCPVKA 57


>gi|16303247|dbj|BAB70482.1| pyruvate:ferredoxin oxidoreductase delta subunit [Sulfolobus
           solfataricus]
          Length = 363

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV--------DAIKP 57
           + CI CK   C   CP +CF    +    I  D C+ CG+C   CPV        +++  
Sbjct: 268 DTCIECKL--CWVYCPDECFDGTPDGYYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFT 325

Query: 58  DTEPGLELWLKINSEYATQW 77
           D     E+W +  ++Y  +W
Sbjct: 326 DYRRPYEMWKEDKAKY-KEW 344


>gi|188495190|ref|ZP_03002460.1| hydrogenase-4 component A [Escherichia coli 53638]
 gi|188490389|gb|EDU65492.1| hydrogenase-4 component A [Escherichia coli 53638]
          Length = 200

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|240015030|ref|ZP_04721943.1| putative ferredoxin [Neisseria gonorrhoeae DGI18]
 gi|240081619|ref|ZP_04726162.1| putative ferredoxin [Neisseria gonorrhoeae FA19]
 gi|240113900|ref|ZP_04728390.1| putative ferredoxin [Neisseria gonorrhoeae MS11]
 gi|240116632|ref|ZP_04730694.1| putative ferredoxin [Neisseria gonorrhoeae PID18]
 gi|240118855|ref|ZP_04732917.1| putative ferredoxin [Neisseria gonorrhoeae PID1]
 gi|240122098|ref|ZP_04735060.1| putative ferredoxin [Neisseria gonorrhoeae PID24-1]
 gi|240124392|ref|ZP_04737348.1| putative ferredoxin [Neisseria gonorrhoeae PID332]
 gi|240124736|ref|ZP_04737622.1| putative ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|240129069|ref|ZP_04741730.1| putative ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|254494652|ref|ZP_05107823.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|260439607|ref|ZP_05793423.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|268597712|ref|ZP_06131879.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268599961|ref|ZP_06134128.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602297|ref|ZP_06136464.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604560|ref|ZP_06138727.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683016|ref|ZP_06149878.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683315|ref|ZP_06150177.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687445|ref|ZP_06154307.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042849|ref|ZP_06568590.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513692|gb|EEH63037.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|268551500|gb|EEZ46519.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584092|gb|EEZ48768.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586428|gb|EEZ51104.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588691|gb|EEZ53367.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623300|gb|EEZ55700.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623599|gb|EEZ55999.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627729|gb|EEZ60129.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291013283|gb|EFE05249.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 279

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVITDECTGCGLCVAPCPVDCIH 125



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C    CV  CPVDC + 
Sbjct: 101 MHTVITDECTGCGL--CVAPCPVDCIHM 126


>gi|126664787|ref|ZP_01735771.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
 gi|126631113|gb|EBA01727.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
          Length = 659

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 6   TENCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T  C   +      T C++VCP +  +   + + I+ D C  CG C   CP  A+  +  
Sbjct: 278 TSLCAHSRANQPGCTRCLDVCPTEAIFSAGDHVEINSDICAGCGSCAAVCPTSAVTMNET 337

Query: 61  P 61
           P
Sbjct: 338 P 338



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           ++ C LC    CV +CP     +  +   +    + C+ CGVCE  CP  AI
Sbjct: 512 SDKCTLCL--ACVSLCPTGALGDHPDRPEVQFTENACVQCGVCESTCPETAI 561



 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           + I+ D+C  C  C   CP  A+    +     + + N+
Sbjct: 508 IEINSDKCTLCLACVSLCPTGALGDHPDRPEVQFTE-NA 545


>gi|317484980|ref|ZP_07943864.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316923785|gb|EFV44987.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 622

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 6   TENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            E C+ C    CV+   CP   F   +  ++I P +CI C VC   CP +AI+P
Sbjct: 571 GERCVNC--HTCVDTFGCP--AFQLRDGKVSIDPVQCIGCAVCAQVCPNNAIRP 620


>gi|153003957|ref|YP_001378282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Anaeromyxobacter sp. Fw109-5]
 gi|152027530|gb|ABS25298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Anaeromyxobacter sp. Fw109-5]
          Length = 100

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +T+ CI C    C   CP     +GE+   I P+ C +C        C+  CPVD 
Sbjct: 1  MATKITDECINCG--ACEPECPNSAITQGEDIYVIDPNLCTECVGFHGEEACQAVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPN 79
            PD E G    + + +  AT  P+
Sbjct: 59 CIPDEEKGETEEV-LYARLATIHPD 82


>gi|15832637|ref|NP_311410.1| anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748420|ref|ZP_02773442.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756293|ref|ZP_02781300.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761131|ref|ZP_02786138.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768613|ref|ZP_02793620.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773565|ref|ZP_02798572.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778487|ref|ZP_02803494.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787867|ref|ZP_02812874.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC869]
 gi|168798892|ref|ZP_02823899.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC508]
 gi|195936663|ref|ZP_03082045.1| putative anaerobic dimethyl sulfoxide reductase chain B
           [Escherichia coli O157:H7 str. EC4024]
 gi|208806169|ref|ZP_03248506.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813124|ref|ZP_03254453.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821767|ref|ZP_03262087.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397819|ref|YP_002271991.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327591|ref|ZP_03443674.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794467|ref|YP_003079304.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223047|ref|ZP_05937328.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259402|ref|ZP_05951935.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283742|ref|YP_003500560.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415785|ref|ZP_06658428.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|331653949|ref|ZP_08354950.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
 gi|13362853|dbj|BAB36806.1| putative anaerobic dimethyl sulfoxide reductase chain B
           [Escherichia coli O157:H7 str. Sakai]
 gi|187770599|gb|EDU34443.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017042|gb|EDU55164.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003152|gb|EDU72138.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356621|gb|EDU75040.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362214|gb|EDU80633.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368397|gb|EDU86813.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372381|gb|EDU90797.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC869]
 gi|189378639|gb|EDU97055.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC508]
 gi|208725970|gb|EDZ75571.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734401|gb|EDZ83088.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741890|gb|EDZ89572.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159219|gb|ACI36652.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217319958|gb|EEC28383.1| dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593867|gb|ACT73228.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
           O157:H7 str. TW14359]
 gi|290763615|gb|ADD57576.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433433|gb|EFF06412.1| anaerobic dimethyl sulfoxide reductase subunit B [Escherichia coli
           B185]
 gi|320188854|gb|EFW63513.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. EC1212]
 gi|320646308|gb|EFX15235.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H- str.
           493-89]
 gi|320651813|gb|EFX20193.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H- str.
           H 2687]
 gi|320657199|gb|EFX25008.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662805|gb|EFX30137.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667609|gb|EFX34524.1| Dimethylsulfoxide reductase, chain B [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340319|gb|EGD64123.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1125]
 gi|326345003|gb|EGD68747.1| Anaerobic dimethyl sulfoxide reductase chain B [Escherichia coli
           O157:H7 str. 1044]
 gi|331048798|gb|EGI20874.1| dimethylsulfoxide reductase, chain B [Escherichia coli M718]
          Length = 209

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|219667265|ref|YP_002457700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537525|gb|ACL19264.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 193

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C++  CVEVCPV   Y+ E+ + +    +CI CG C   CP +A
Sbjct: 64  CNHCENAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYCVASCPYNA 110


>gi|238895928|ref|YP_002920664.1| putative oxidoreductase Fe-S binding subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548246|dbj|BAH64597.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 660

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP  
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFG 100


>gi|126656100|ref|ZP_01727484.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cyanothece sp.
          CCY0110]
 gi|126622380|gb|EAZ93086.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cyanothece sp.
          CCY0110]
          Length = 75

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTKTCEGI--ADCVDACPVACIHEGPGKNVKGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAILPEERPDLQK 72


>gi|157164645|ref|YP_001466166.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Campylobacter concisus 13826]
 gi|112800391|gb|EAT97735.1| electron transport protein HydN [Campylobacter concisus 13826]
          Length = 189

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+   C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 48  VMPTQCRQCDDGPCANVCPTGALRFNDNCIELHEEICIGCKMCTIACPYGAISSSAE 104


>gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 488

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           ++ E+C+ C  T C  VCPV+C       +  I    CI CG C   C   AI
Sbjct: 435 ILAESCVGC--TLCSRVCPVNCISGTVKGVHVIDQAACIKCGACIDACKFQAI 485



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
           + I  + C+ C +C   CPV+ I
Sbjct: 433 IVILAESCVGCTLCSRVCPVNCI 455


>gi|329964944|ref|ZP_08301952.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328524585|gb|EGF51653.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 486

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP    +  E     I  D CI CG+C   CP  AI  
Sbjct: 116 YEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVY 171



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV     + +    I  ++CI CG C   CP
Sbjct: 152 DACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDAKGIEHIDENKCIYCGKCLNACP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAIFE 217


>gi|188586889|ref|YP_001918434.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351576|gb|ACB85846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 226

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTD-CVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ E CI C+    C EVCP +            I  DEC+ CG C   CP + I  D
Sbjct: 120 IIPETCIQCEEPVMCAEVCPQNAIGSHPETGARVIDEDECVGCGECVDACPWEMIAMD 177


>gi|294637161|ref|ZP_06715469.1| hydrogenase-2 operon protein HybA [Edwardsiella tarda ATCC 23685]
 gi|291089625|gb|EFE22186.1| hydrogenase-2 operon protein HybA [Edwardsiella tarda ATCC 23685]
          Length = 327

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV     +     +   PD C  C  C   CP D  K D +
Sbjct: 109 IKKQCMHCVDPNCVSVCPVSALKKHPVTGIVMYDPDVCTGCRYCMVACPFDVPKYDYD 166


>gi|20093899|ref|NP_613746.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886840|gb|AAM01676.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 379

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  + CI C    C +VCPVD     E      I PD C+ CG+C   CP  A+
Sbjct: 236 YIQPDMCIGC--RICYDVCPVDAIRIEEITRMPVIMPDLCVRCGLCADACPTSAV 288



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C   +CV  CP +              +    I PD CI C +C   CPVDAI+ 
Sbjct: 202 ERCLGC--YNCVAYCPTEALKRPDHRPRPKCTDEVFYIQPDMCIGCRICYDVCPVDAIRI 259

Query: 58  DT 59
           + 
Sbjct: 260 EE 261



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 3/93 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL- 67
           C  C++  C+EVCP     E      I  D C  C  C   CP  ++  + E        
Sbjct: 108 CDRCENRPCIEVCPTGVMREIIEEHRIDLDACHGCLECVKVCPYGSVTVELEVPQLKRRS 167

Query: 68  --KINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
             ++N E   +         +  +    DG   
Sbjct: 168 NPRLNRELCVECNRCHEVCPTGAADNVPDGDPD 200



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          + C  C    C EVCP     E +  + +  D C+ C  C   CP
Sbjct: 27 DECAGCGL--CAEVCPTGAI-EVDERVRLDEDRCVACSFCVQACP 68



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          PDEC  CG+C   CP  AI+ D    L+ 
Sbjct: 26 PDECAGCGLCAEVCPTGAIEVDERVRLDE 54



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEP 61
           E C+ C    C EVCP        +     P+ C+ C  C   CP +A+K PD  P
Sbjct: 174 ELCVECN--RCHEVCPTGAADNVPDGDP-DPERCLGCYNCVAYCPTEALKRPDHRP 226


>gi|323702855|ref|ZP_08114514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532243|gb|EGB22123.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 571

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPD 58
          M  + T ++C  C    CV  CPV      +    I  + C+ CG C   C + A I  D
Sbjct: 1  MALISTNQDCRKC--YACVRACPVKTISISDGIPEIIEEGCLGCGQCVLACSIGAKIVHD 58

Query: 59 TEPGLELWL 67
            P ++ W+
Sbjct: 59 DTPKVQRWI 67


>gi|218705980|ref|YP_002413499.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli UMN026]
 gi|218433077|emb|CAR13972.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli UMN026]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            E C  C    CV+VCPV            AI    CI CG C  +CPV  I  + E
Sbjct: 791 GEKCRRCGL--CVKVCPVKAISGEIRKTPFAIDAKLCIACGACAQKCPVHVIAQEGE 845



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 11  LCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             K   C   VCP     + +    I  ++C  CG+C   CPV AI  +
Sbjct: 767 HIKEKRCPAGVCPA---LKPKGKYRIDGEKCRRCGLCVKVCPVKAISGE 812


>gi|193064781|ref|ZP_03045859.1| hydrogenase-4 component A [Escherichia coli E22]
 gi|194427266|ref|ZP_03059816.1| hydrogenase-4 component A [Escherichia coli B171]
 gi|218555007|ref|YP_002387920.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI1]
 gi|260845115|ref|YP_003222893.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O103:H2 str.
          12009]
 gi|260856576|ref|YP_003230467.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O26:H11 str.
          11368]
 gi|260869171|ref|YP_003235573.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O111:H- str.
          11128]
 gi|307312525|ref|ZP_07592158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|192927664|gb|EDV82280.1| hydrogenase-4 component A [Escherichia coli E22]
 gi|194414587|gb|EDX30859.1| hydrogenase-4 component A [Escherichia coli B171]
 gi|218361775|emb|CAQ99372.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli IAI1]
 gi|257755225|dbj|BAI26727.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O26:H11 str.
          11368]
 gi|257760262|dbj|BAI31759.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O103:H2 str.
          12009]
 gi|257765527|dbj|BAI37022.1| hydrogenase 4, 4Fe-4S subunit [Escherichia coli O111:H- str.
          11128]
 gi|306907448|gb|EFN37952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|315061800|gb|ADT76127.1| hydrogenase 4, membrane subunit [Escherichia coli W]
 gi|323156083|gb|EFZ42242.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323159332|gb|EFZ45317.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323177399|gb|EFZ62987.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323377619|gb|ADX49887.1| hydrogenase 4 Fe-S subunit [Escherichia coli KO11]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|323184464|gb|EFZ69839.1| hydrogenase-4 component A [Escherichia coli 1357]
          Length = 205

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C++VCPV+   + ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 97


>gi|238928196|ref|ZP_04659956.1| formate dehydrogenase beta subunit [Selenomonas flueggei ATCC
           43531]
 gi|238884156|gb|EEQ47794.1| formate dehydrogenase beta subunit [Selenomonas flueggei ATCC
           43531]
          Length = 271

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C    C + CP +     EN  + I+ D+C+ C  CE  CP    K D 
Sbjct: 76  NCFHCGDPACAKGCPENAIDRNENGTVVINQDKCVGCHYCEHNCPWHIPKIDD 128


>gi|119489835|ref|ZP_01622590.1| Transcriptional Regulator, XRE family protein [Lyngbya sp. PCC
          8106]
 gi|119454263|gb|EAW35414.1| Transcriptional Regulator, XRE family protein [Lyngbya sp. PCC
          8106]
          Length = 532

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M Y + ENC  C    C   CP     E E  L I P  C  C G      C  +CP+  
Sbjct: 1  MPYSIPENCSGCG--TCKPNCPTGAIQEVEGQLWIDPALCNHCEGYYSEPQCVVQCPISC 58

Query: 55 IKPDTE 60
            P   
Sbjct: 59 PVPSQP 64



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
               P+ C  CG C+P CP  AI+   E   +LW+ 
Sbjct: 1  MPYSIPENCSGCGTCKPNCPTGAIQ---EVEGQLWID 34


>gi|262042086|ref|ZP_06015262.1| glutamate synthase subunit small chain [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|330013592|ref|ZP_08307680.1| putative oxidoreductase Fe-S binding subunit [Klebsiella sp. MS
           92-3]
 gi|259040567|gb|EEW41662.1| glutamate synthase subunit small chain [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|328533471|gb|EGF60204.1| putative oxidoreductase Fe-S binding subunit [Klebsiella sp. MS
           92-3]
          Length = 660

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   CV  CP D   +  + + +  ++CI C  C   CP  
Sbjct: 56  CRHCEDAPCVRSCPNDAIAQSGDSVQVRQEKCIGCKSCMVACPFG 100


>gi|297619793|ref|YP_003707898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378770|gb|ADI36925.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 395

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ VTE CI C+   CVEVCP D   Y  E+ +   P+ C  C +CE  CPVDAI  + E
Sbjct: 192 SFTVTEECIGCE--KCVEVCPGDMITYNAEDLIVKLPEACPACHLCEQNCPVDAISLEVE 249



 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C  ++CV VCPVD          I  D+CI C VC   CP +AI 
Sbjct: 128 VTDACVGC--SECVPVCPVDAISIENELAVIDTDKCIYCTVCAQTCPWNAIY 177



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C LC    C   CP     E    L  +  +C+ CG C   CP  
Sbjct: 34 CNLC--FSCASACPTGALVENNGKLIYNSSKCLKCGNCATACPTG 76



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCF-----YEGENFLAIHP-------DECIDCGVCEPECPVDAIK 56
           C+LC+   CV+ CP+D        +        P       D C+ C  C P CPVDAI 
Sbjct: 91  CVLCE--KCVDACPIDIISIPGKIDKPEKEIAIPQEPIKVTDACVGCSECVPVCPVDAIS 148

Query: 57  PDTE 60
            + E
Sbjct: 149 IENE 152



 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 10/51 (19%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECP 51
           CI C    CV  CP      G+        N +   P  C  CG C   CP
Sbjct: 308 CIRCG--ACVMKCPTGALKMGKITHEGKEYNRIEFSPALCNQCGECVDVCP 356


>gi|326392042|ref|ZP_08213536.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW
          200]
 gi|325991921|gb|EGD50419.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW
          200]
          Length = 437

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 1  MTYV--VT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y   VT   + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|296125226|ref|YP_003632478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
          murdochii DSM 12563]
 gi|296017042|gb|ADG70279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
          murdochii DSM 12563]
          Length = 55

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M  V+  +C+ C    C   C  D   EG +   I PD+C DCG CEP CP +AI  
Sbjct: 1  MPRVINNDCVACG--SCKPECAFDAISEG-DIYVIDPDKCTDCGACEPVCPSNAIHQ 54


>gi|13474673|ref|NP_106242.1| DMSO reductase chain B [Mesorhizobium loti MAFF303099]
 gi|14025428|dbj|BAB52028.1| DMSO reductase chain B [Mesorhizobium loti MAFF303099]
          Length = 244

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +    + +  I  D+CI C +C   CP  A + DT+ G
Sbjct: 80  SCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVG 136


>gi|327309969|ref|YP_004336866.1| sulfur reductase subunit B [Thermoproteus uzoniensis 768-20]
 gi|326946448|gb|AEA11554.1| sulfur reductase, subunit B [Thermoproteus uzoniensis 768-20]
          Length = 266

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ V  +C  C++  C  VCP    ++ +    + I+ D CI C  CE  CP   I  D 
Sbjct: 70  TFSVPISCFHCRNPACTTVCPTGAIFKRKEDGVVVINYDVCIGCRYCENACPYGNITFDP 129

Query: 60  EPGLELW--LKINSEYATQWP 78
             G+     L I+  Y    P
Sbjct: 130 VEGVSKKCTLAIDRIYDESLP 150


>gi|326791483|ref|YP_004309304.1| Fe-S cluster domain protein [Clostridium lentocellum DSM 5427]
 gi|326542247|gb|ADZ84106.1| Fe-S cluster domain protein [Clostridium lentocellum DSM 5427]
          Length = 463

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 2  TYVVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T+ VT   E CI C  TDC++ CP +      +   I  + CIDCG C   C   A
Sbjct: 3  THSVTIEKEKCIGC--TDCIKRCPTEAIRVRGSKAEIIEERCIDCGNCIRICRNGA 56



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I  ++CI C  C   CP +AI+
Sbjct: 8  IEKEKCIGCTDCIKRCPTEAIR 29


>gi|156934229|ref|YP_001438145.1| electron transport protein HydN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532483|gb|ABU77309.1| hypothetical protein ESA_02059 [Cronobacter sakazakii ATCC BAA-894]
          Length = 182

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++    P
Sbjct: 59  CRQCEDAPCASVCPNGAITRDNDFVHVHQQRCIGCKTCVVACPYGAMEVVVRP 111


>gi|117618565|ref|YP_857778.1| tetrathionate reductase, subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559972|gb|ABK36920.1| tetrathionate reductase, subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 262

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C++VCP    F   +  + ++ D C+ CG C   CP DA
Sbjct: 109 CNHCAEPACLDVCPTGATFQRDDGIVVVNNDWCVGCGYCVQACPYDA 155


>gi|332702846|ref|ZP_08422934.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552995|gb|EGJ50039.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 337

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE+C  C    C E CP       ++   +   +C+ CGVC   C   A+  + EP  
Sbjct: 265 VETEHCAGCG--ACTEACPFGAMGIRDDHAWVDEKQCMGCGVCLTRCDHQALHLEREPSR 322

Query: 64  ELWLKINSEYATQWP 78
              L+I +    + P
Sbjct: 323 GDPLEIEALLNAKSP 337


>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 635

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +  E CI C    C + CP D           I+PD+CI CG+C   C   AI
Sbjct: 578 LTYTINPELCIGC--HLCFKHCPADAILGDVRKPHVINPDKCIKCGMCMARCKFKAI 632



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I+P+ CI C +C   CP DAI  D     
Sbjct: 580 YTINPELCIGCHLCFKHCPADAILGDVRKPH 610


>gi|150401707|ref|YP_001325473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014410|gb|ABR56861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 173

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
          C  C    C EVCPVD  Y  ++  + +  ++CI CG+C   CP  AI
Sbjct: 44 CQHCASAPCKEVCPVDAIYHLDDGTVYLDEEKCIGCGLCPMACPFGAI 91


>gi|126725238|ref|ZP_01741081.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126706402|gb|EBA05492.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 249

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCDDAPCVTVCPTGASYKRAEDGIVLVNEDACIGCGLCAWACPYGAREMDQAEG 137


>gi|154174684|ref|YP_001407618.1| electron transport protein HydN [Campylobacter curvus 525.92]
 gi|112802520|gb|EAT99864.1| electron transport protein HydN [Campylobacter curvus 525.92]
          Length = 189

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCP       +N + +H + CI C +C   CP  AI    E
Sbjct: 53  CRQCDDGPCANVCPTGALRFDDNCIELHEEICIGCKMCTIACPYGAISSSAE 104


>gi|59802094|ref|YP_208806.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|194099985|ref|YP_002003124.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997992|ref|ZP_04717916.1| putative ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|240017478|ref|ZP_04724018.1| putative ferredoxin [Neisseria gonorrhoeae FA6140]
 gi|268593845|ref|ZP_06128012.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|293398133|ref|ZP_06642338.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|59718989|gb|AAW90394.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|193935275|gb|ACF31099.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|268547234|gb|EEZ42652.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|291611396|gb|EFF40466.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|317165435|gb|ADV08976.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 279

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CP D        +  +  DEC  CG+C   CPVD I 
Sbjct: 78  ACIGC--TACIRACPADAIMGAGKLMHTVITDECTGCGLCVAPCPVDCIH 125



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CP DAI
Sbjct: 74 IDETACIGCTACIRACPADAI 94



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C    CV  CPVDC + 
Sbjct: 101 MHTVITDECTGCGL--CVAPCPVDCIHM 126


>gi|307353080|ref|YP_003894131.1| FAD dependent oxidoreductase [Methanoplanus petrolearius DSM 11571]
 gi|307156313|gb|ADN35693.1| FAD dependent oxidoreductase [Methanoplanus petrolearius DSM 11571]
          Length = 428

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 20/83 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV  E C  C    C EVCPV+ +                      N     P+ CIDCG
Sbjct: 98  YVDAELCNGCGD--CYEVCPVEVYNRYDAGLGVRKAIYKPHAQIVPNLAIRDPEHCIDCG 155

Query: 45  VCEPECPVDAIKPDTEPGLELWL 67
           +C   C  +A++ D E   E + 
Sbjct: 156 LCYDVCGREAVRHDDEDSEEEFT 178


>gi|304437604|ref|ZP_07397559.1| formate dehydrogenase-O, beta subunit [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369417|gb|EFM23087.1| formate dehydrogenase-O, beta subunit [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 271

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C    C + CP +     EN  + I+ D+C+ C  CE  CP    K D 
Sbjct: 76  NCFHCGDPACAKGCPENAIDRNENGTVVINQDKCVGCHYCEHNCPWHIPKIDD 128


>gi|237653652|ref|YP_002889966.1| electron transport complex, RnfABCDGE type subunit beta [Thauera
           sp. MZ1T]
 gi|237624899|gb|ACR01589.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp.
           MZ1T]
          Length = 179

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           +  V T+ CI C  + C++ CP D        L  +  + CI CG C   CP   I  +
Sbjct: 104 LARVRTDACIGC--SRCIKSCPTDAILGATKQLHVVLEEACIGCGACAEVCPTGGIDLE 160


>gi|221633945|ref|YP_002523171.1| putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
 gi|221157195|gb|ACM06322.1| putative [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 282

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVD 53
           ++ C  C H  C+E CP       E + + I  D C  CG C P CP  
Sbjct: 96  SDVCKHCVHAGCMEACPTGAIIRTEFDTVVIQQDICNGCGYCVPACPFG 144


>gi|328951758|ref|YP_004369092.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452082|gb|AEB07911.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 370

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CV  C  +      +   I P +C+ C  C   CP   I+      + ++LK
Sbjct: 198 CTGCGD--CVAHCAQEAIRLEADKAVIDPAKCVGCAECILVCPYGNIEIQWNESIPVFLK 255

Query: 69  INSEY 73
              EY
Sbjct: 256 KMVEY 260


>gi|322831873|ref|YP_004211900.1| electron transport protein HydN [Rahnella sp. Y9602]
 gi|321167074|gb|ADW72773.1| electron transport protein HydN [Rahnella sp. Y9602]
          Length = 181

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP        + + +  + CI C  C   CP  A++  T+P    
Sbjct: 58  CRQCEDAPCANVCPNGAILRTGDHVQVMQERCIGCKTCVVACPYGAMEVVTKPVFRQ 114


>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
 gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
          Length = 635

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY ++ E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 578 LTYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 607

 Score = 57.9 bits (139), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCPV C          I   EC+ CG C   C   AI   T
Sbjct: 540 SYVIDPEKCVGC--TACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVT 597

Query: 60  EP 61
             
Sbjct: 598 PA 599


>gi|119720314|ref|YP_920809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525434|gb|ABL78806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 286

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
           C+ C    C   CPV          + I  +ECI CG CE  CP 
Sbjct: 95  CMHCATAPCSRACPVGAIKVTPEGAVVISKEECIGCGFCETACPF 139


>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 592

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C+ C    C  VCPV     E +    I P++CI CG C  +C   AI
Sbjct: 542 DKCVGCG--ACARVCPVGAISGERKQPHQIDPEKCIKCGSCMEKCKFGAI 589



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I  D+C+ CG C   CPV AI  + +   +
Sbjct: 539 ILEDKCVGCGACARVCPVGAISGERKQPHQ 568


>gi|51892072|ref|YP_074763.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
 gi|51855761|dbj|BAD39919.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
          Length = 96

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   + + CI C    C   CP +    G+    I PD+C +C        C   CPV+ 
Sbjct: 1  MAVKIIDTCISCG--ACEPECPNEAISPGDTIYVIDPDKCTECYGFYSESQCIAVCPVEC 58

Query: 55 IKPDTEP 61
          I PD + 
Sbjct: 59 IIPDEDH 65


>gi|148266186|ref|YP_001232892.1| sigma-54 dependent trancsriptional regulator [Geobacter
          uraniireducens Rf4]
 gi|146399686|gb|ABQ28319.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          uraniireducens Rf4]
          Length = 755

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          TE C  C    CV  CPV      +N+  I  + CI CG C   CP  A
Sbjct: 8  TEKCRKC--YSCVRSCPVKAIKVEKNYSEIIFERCIGCGNCLSNCPQHA 54


>gi|119983|sp|P14073|FER_BUTME RecName: Full=Ferredoxin
          Length = 55

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y +T+ CI C    C + CPV+   EG     I    C DCG C  +CPV+AI P+ 
Sbjct: 1  AYKITDECIACG--SCADQCPVEAISEGS-IYEIDEALCTDCGACADQCPVEAIVPED 55


>gi|304410948|ref|ZP_07392565.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307304881|ref|ZP_07584631.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304350845|gb|EFM15246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306912283|gb|EFN42707.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 260

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
 gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
          Length = 635

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY ++ E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 578 LTYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|212223165|ref|YP_002306401.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
 gi|212008122|gb|ACJ15504.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
          Length = 638

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VV E C  CK    +  CP   +    N + I    C  CGVC   CP DAIK  +E G
Sbjct: 578 VVEEKCTGCKACILLTGCPALVYDPDTNKVKIDELLCTGCGVCNQLCPFDAIKFPSELG 636


>gi|167752987|ref|ZP_02425114.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216]
 gi|167659301|gb|EDS03431.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216]
          Length = 271

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP +   +       I+ D CI CG+C   CP  AI  
Sbjct: 108 YEITNLCKGCVARACATNCPKNAIEFNRAGKAVINHDLCISCGICHSNCPYHAIVY 163



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E  +  I   +CI CG C   CP
Sbjct: 144 DLCISCGICHSNCPYHAIVYMPVPCEEACPVKAITKDERGVEHIDESKCIYCGKCINSCP 203

Query: 52  VDAIKP 57
             AI  
Sbjct: 204 FGAIFE 209


>gi|160872682|ref|ZP_02062814.1| iron-sulfur cluster binding protein [Rickettsiella grylli]
 gi|159121481|gb|EDP46819.1| iron-sulfur cluster binding protein [Rickettsiella grylli]
          Length = 217

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           MT  + E  CI C  T C++ CPVD        L  +   EC  CG+C   CPVD I
Sbjct: 88  MTARIRESECIGC--TKCIQACPVDAIVGAAKQLHVVLKQECTGCGLCIAPCPVDCI 142


>gi|238798700|ref|ZP_04642173.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia mollaretii
           ATCC 43969]
 gi|238717457|gb|EEQ09300.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia mollaretii
           ATCC 43969]
          Length = 205

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C    CV  CP    +  E +  + ++PD C+ C  CE  CP  A + D +
Sbjct: 60  YYLSIACNHCSFPTCVTGCPTGAMHKREEDGLVVVNPDLCVGCRYCEMRCPYGAPQFDAK 119


>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 635

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY ++ E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 578 LTYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
 gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
          Length = 635

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY ++ E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 578 LTYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|315230306|ref|YP_004070742.1| Fe-S-cluster-containing hydrogenase components 1 [Thermococcus
           barophilus MP]
 gi|315183334|gb|ADT83519.1| Fe-S-cluster-containing hydrogenase components 1 [Thermococcus
           barophilus MP]
          Length = 168

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C+   C+ VCP +  Y+  +   I  P +CI C +C   CP  A   D  
Sbjct: 47  NCRHCEKAPCMNVCPSNAIYKDTDGAVIIDPKKCIGCLMCLAVCPFGAPSYDAR 100


>gi|307266701|ref|ZP_07548229.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918303|gb|EFN48549.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 435

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 1  MTYV--VT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+Y   VT   + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 1  MSYFHSVTLDKDRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 635

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY ++ E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 578 LTYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 632


>gi|219667681|ref|YP_002458116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537941|gb|ACL19680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 178

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           +C+ C    C  VCP   + + E+ L I   D+C+ CG C   CP  A K
Sbjct: 58  SCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACPYQAPK 107


>gi|197123586|ref|YP_002135537.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196173435|gb|ACG74408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 273

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++ V + C  C+ T C++VCPV   Y   + +  +  + CI C  C   CP  
Sbjct: 139 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGVVLVDGERCIGCAYCVQACPFG 191



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 33 LAIHPDECIDCGVCEPECPVD 53
            + P++CI CG C   C  +
Sbjct: 73 YLVDPEKCIGCGSCVRACSAE 93


>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 635

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +  E CI C    C + CP D           IHP++CI CG+C   C   AI
Sbjct: 578 LTYTINPELCIGC--HLCAKNCPADAISGLVRKPHVIHPEKCIKCGMCMARCKFKAI 632


>gi|89896465|ref|YP_519952.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335913|dbj|BAE85508.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 178

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           +C+ C    C  VCP   + + E+ L I   D+C+ CG C   CP  A K
Sbjct: 58  SCMHCAEPQCASVCPTKAYTKREDGLVIQDHDKCVGCGYCIYACPYQAPK 107


>gi|50120165|ref|YP_049332.1| hydrogenase 2 protein HybA [Pectobacterium atrosepticum SCRI1043]
 gi|49610691|emb|CAG74136.1| hydrogenase-2 operon protein [Pectobacterium atrosepticum SCRI1043]
          Length = 336

 Score = 57.5 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +  +   +   PD C  C  C   CP +  K D +  
Sbjct: 114 IKKQCMHCVDPNCVSVCPVQALRKDAHTGIVHYDPDVCTGCRYCIVGCPFNVPKYDYDDP 173

Query: 63  L 63
            
Sbjct: 174 F 174


>gi|257064392|ref|YP_003144064.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792045|gb|ACV22715.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 398

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          K   C+E C   C    +N + + P +CI CG C   CP DAI P      EL
Sbjct: 32 KCMRCLESCAGGCIGYEDNEITVDPTKCIGCGTCATVCPTDAIHPKKPTDAEL 84


>gi|271965199|ref|YP_003339395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270508374|gb|ACZ86652.1| 4Fe-4S ferredoxin iron-sulfur binding domain- containing protein
           [Streptosporangium roseum DSM 43021]
          Length = 288

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 87  SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQADVCNGCGYCVPACPYGVI 137


>gi|257790196|ref|YP_003180802.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474093|gb|ACV54413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 209

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            + V+  C  C    C+EVCP     + E  L  +    CI CG C   CP  A K D
Sbjct: 60  AFYVSSACNHCASPACMEVCPTGAMGKNELGLVSVDEHRCIGCGYCALSCPYHAPKVD 117


>gi|294634056|ref|ZP_06712612.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Streptomyces sp.
           e14]
 gi|292830052|gb|EFF88405.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Streptomyces sp.
           e14]
          Length = 327

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I    E G
Sbjct: 147 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQEDVCNGCGYCVPACPYGVIDQRKEDG 204


>gi|163752014|ref|ZP_02159224.1| TtrB [Shewanella benthica KT99]
 gi|161328119|gb|EDP99287.1| TtrB [Shewanella benthica KT99]
          Length = 231

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           V   C  C +  CV VCPV   Y+ +    + I  DECI C +C   CP  A
Sbjct: 84  VPNQCNQCDNPACVYVCPVGATYKRKEDGIVVIDHDECIYCQLCVDACPYGA 135


>gi|118431333|ref|NP_147723.2| putative ATPase RIL [Aeropyrum pernix K1]
 gi|116062656|dbj|BAA80104.2| ABCE1 homolog [Aeropyrum pernix K1]
          Length = 614

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 17/80 (21%)

Query: 7  ENCI--LCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C    C + +C+ VCPV         D          I+ D CI C +C   CP DAI
Sbjct: 15 DSCKPKKCSY-ECIAVCPVNKSGRGVAIDADMASRGKPVIYEDACIGCALCVKACPFDAI 73

Query: 56 K-----PDTEPGLELWLKIN 70
                 + E        +N
Sbjct: 74 YIVNLPMELEEEAVHRYGVN 93


>gi|91780908|ref|YP_556115.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
 gi|91693568|gb|ABE36765.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans
          LB400]
          Length = 414

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP+D     +N   +  D C  C  C   CP  AI
Sbjct: 18 EICIRCN--TCEETCPIDAITHDDNNYVVKADVCNGCMACVSPCPTGAI 64



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|78185994|ref|YP_374037.1| hypothetical protein Plut_0104 [Chlorobium luteolum DSM 273]
 gi|78165896|gb|ABB22994.1| hypothetical protein Plut_0104 [Chlorobium luteolum DSM 273]
          Length = 83

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M + + + CI+C    C   CPV+    G++   I   +C+DC        C   CP D+
Sbjct: 22 MAHKINDTCIMCG--ACEPECPVNAISPGDDTYVIDATKCVDCVGHHDEPACVAVCPSDS 79

Query: 55 IK 56
          I+
Sbjct: 80 IE 81



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          D CI CG CEPECPV+AI P  +
Sbjct: 28 DTCIMCGACEPECPVNAISPGDD 50


>gi|331674371|ref|ZP_08375131.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
 gi|331068465|gb|EGI39860.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
          Length = 644

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T  C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 58  TVACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
 gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
          Length = 301

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           CI C    CV+VCP +     EN    I  ++C  CGVC   CP  A++
Sbjct: 55  CIHC--HTCVKVCPENAISFDENETQQIDREKCTGCGVCASACPTSALR 101



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 39 ECIDCGVCEPECPVDAIKPDTEPGLE 64
          +CI C  C   CP +AI  D     +
Sbjct: 54 KCIHCHTCVKVCPENAISFDENETQQ 79


>gi|89893633|ref|YP_517120.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89333081|dbj|BAE82676.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 205

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           + +  NC  C +  CV+ CPV   +   E+ L I   D+CI C +C   CP +A
Sbjct: 58  HHIPLNCQHCGNPACVKACPVGATYKREEDGLVIQDYDKCIGCRMCMVACPYNA 111


>gi|260461936|ref|ZP_05810181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032183|gb|EEW33449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 244

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +    + +  I  D+CI C +C   CP  A + DT+ G
Sbjct: 80  SCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVG 136


>gi|322685522|gb|EFY81518.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
          Length = 176

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 31 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 87


>gi|310642489|ref|YP_003947247.1| oxidoreductase fe-s binding subunit [Paenibacillus polymyxa SC2]
 gi|309247439|gb|ADO57006.1| Oxidoreductase Fe-S binding subunit [Paenibacillus polymyxa SC2]
          Length = 196

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP       +  + I+ + CI C  C   CP  AI
Sbjct: 59  CRHCEDAPCANACPNGSITNADGCILINSESCIGCKTCMIACPYGAI 105


>gi|307596381|ref|YP_003902698.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
           distributa DSM 14429]
 gi|307551582|gb|ADN51647.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1129

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C++ CP             H P  C  CG C  ECP DAI  D      +  
Sbjct: 921 CTKCGL--CIKACPYGAIRGVPGKWIEHIPAACQGCGACVAECPQDAITLDAMSDDVILA 978

Query: 68  KINSEYATQ 76
           ++ +  A +
Sbjct: 979 QVEAALAEE 987



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 39  ECIDCGVCEPECPVDAIK 56
           +C  CG+C   CP  AI+
Sbjct: 920 KCTKCGLCIKACPYGAIR 937



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 27/76 (35%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECID---- 42
           VT++C  C    C +VCPV    E                        +  D C++    
Sbjct: 101 VTDDCTKCGQ--CEDVCPVIVPSEFEAGIGARKAIYLPFPQAEPGIYMLDIDHCLNKPPN 158

Query: 43  ---CGVCEPECPVDAI 55
              C  C   C  +AI
Sbjct: 159 YFPCDRCAKACDRNAI 174


>gi|271501252|ref|YP_003334277.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270344807|gb|ACZ77572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 339

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +H D   C  C  C   CP D  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFDVPKYDYENP 172

Query: 63  L 63
           L
Sbjct: 173 L 173


>gi|213163783|ref|ZP_03349493.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 171

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 26 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 82


>gi|169830310|ref|YP_001716292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Candidatus Desulforudis audaxviator MP104C]
 gi|169637154|gb|ACA58660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
            Desulforudis audaxviator MP104C]
          Length = 1013

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 7    ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + C  C    CV VCP       E +N   ++   C  CG C   CP  A +       +
Sbjct: 946  DKCSGC--RICVTVCPYSAISFLEAQNVAEVNEVLCKGCGTCAAACPSHAAEHQGFKDEQ 1003

Query: 65   LWLKINSEY 73
            L+ +I +  
Sbjct: 1004 LFAEIEAFL 1012



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 32/89 (35%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAI-HPDECID- 42
           YV  + C+ C    C   CPV   D F EG                N  AI HP++C+  
Sbjct: 102 YVDADKCVACGD--CAAKCPVKVSDEFNEGLEIRKIIANKYPQAVPNTYAITHPEKCLYL 159

Query: 43  ----------CGVCEPECPVDAIKPDTEP 61
                     C +C+  C  DAI  + + 
Sbjct: 160 TKGVQTGKPVCLLCQKACGKDAINWEDKE 188



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 35   IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
            +  D+C  C +C   CP  AI        +   ++N               S   AA+  
Sbjct: 943  VDKDKCSGCRICVTVCPYSAISF---LEAQNVAEVNEVLCKGCGTCAAACPS--HAAEHQ 997

Query: 95   GVKQKYEKYFSP 106
            G K   E+ F+ 
Sbjct: 998  GFKD--EQLFAE 1007



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
            +  D+C+ CG C  +CPV  +  +   GLE+   I ++Y    PN
Sbjct: 102 YVDADKCVACGDCAAKCPVK-VSDEFNEGLEIRKIIANKYPQAVPN 146


>gi|90410032|ref|ZP_01218049.1| anaerobic dimethyl sulfoxide reductase subunit B [Photobacterium
           profundum 3TCK]
 gi|90329385|gb|EAS45642.1| anaerobic dimethyl sulfoxide reductase subunit B [Photobacterium
           profundum 3TCK]
          Length = 210

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C  C    C + CP    ++   +  + ++ D C+ C  CE  CP  A + + E
Sbjct: 65  YYVSISCNHCADPACTKACPSGAMHKRKKDGLVVVNEDVCVGCRYCEMACPYGAPQFNKE 124

Query: 61  PGL 63
            G 
Sbjct: 125 KGH 127


>gi|294495627|ref|YP_003542120.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
 gi|292666626|gb|ADE36475.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
          Length = 784

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI C    C +VC             +    C  CG C   CPVDAI      
Sbjct: 573 AHVDYDTCIGCGV--CTDVCDYGTIKIENGKAFVDEVSCHGCGTCSAACPVDAISMHNHT 630

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 631 DEQVRAQIKAAL 642



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 19/79 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV  E C  C   +C  VCPV+     ++ L                   I  D C+ CG
Sbjct: 237 YVSEEKCKGCVD-ECSRVCPVEIPSRFDSGLGKSRAINIPIPQAVPQVAYIDGDYCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   CP DA++ + +   
Sbjct: 296 LCAQACPADAVEFEQQTTQ 314


>gi|283784717|ref|YP_003364582.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter
           rodentium ICC168]
 gi|282948171|emb|CBG87738.1| anaerobic dimethyl sulfoxide reductase chain B [Citrobacter
           rodentium ICC168]
          Length = 205

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    C +VCP    ++ E+ F+ +  + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCADPACTKVCPSGAMHKREDGFVVVDEEVCIGCRYCHMACPYGAPQY 116


>gi|198276949|ref|ZP_03209480.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM
          17135]
 gi|198270474|gb|EDY94744.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM
          17135]
          Length = 293

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 1  MT--YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
          M   ++    CI CK   CV +CP   F   E+  + ++ D+CI CG C   CP ++I+ 
Sbjct: 9  MAQIHINQNTCIRCK--KCVRICPSALFTLQEDKGIEVNTDDCISCGHCVAVCPTNSIEH 66

Query: 58 DTEPGLE 64
             P  +
Sbjct: 67 ADFPPEK 73


>gi|89897363|ref|YP_520850.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336811|dbj|BAE86406.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 193

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C +  CVEVCPV   Y+ E+ + +    +CI CG C   CP +A
Sbjct: 64  CNHCDNAPCVEVCPVKASYKREDGMVLLDKKKCIGCGYCVASCPYNA 110


>gi|322616397|gb|EFY13306.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619647|gb|EFY16522.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622657|gb|EFY19502.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322637033|gb|EFY33736.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641606|gb|EFY38243.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644439|gb|EFY40979.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649591|gb|EFY46022.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654107|gb|EFY50430.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322663496|gb|EFY59698.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670232|gb|EFY66372.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671468|gb|EFY67590.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676824|gb|EFY72891.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682749|gb|EFY78768.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686428|gb|EFY82410.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323199761|gb|EFZ84850.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323209025|gb|EFZ93962.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323215841|gb|EGA00582.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323226862|gb|EGA11045.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229816|gb|EGA13939.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233041|gb|EGA17137.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240776|gb|EGA24818.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323258529|gb|EGA42199.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323267980|gb|EGA51459.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 205

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++ 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|194431782|ref|ZP_03064073.1| hydrogenase-2 electron transfer subunit [Shigella dysenteriae 1012]
 gi|194420138|gb|EDX36216.1| hydrogenase-2 electron transfer subunit [Shigella dysenteriae 1012]
 gi|332088503|gb|EGI93620.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella dysenteriae 155-74]
          Length = 328

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|150018464|ref|YP_001310718.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149904929|gb|ABR35762.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 268

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    CV  CP      E +    ++P+ CI+CG C   CP +AI
Sbjct: 9  EKCIKCG--MCVVECPTGVLKLEADGPKEVNPNACIECGHCVAVCPKEAI 56



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++CI CG+C  ECP   +K + +   E
Sbjct: 8  KEKCIKCGMCVVECPTGVLKLEADGPKE 35


>gi|302389032|ref|YP_003824853.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199660|gb|ADL07230.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 315

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           TE C  C    C   CP  C  +GE+    +   C  CG+C   CP  AI    E   E 
Sbjct: 258 TEACTQC--WTCWIYCPDTCIKKGEDGPLFNLKYCKGCGLCAAVCPTGAITEVPELDFED 315


>gi|240103186|ref|YP_002959495.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910740|gb|ACS33631.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 658

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  V+ + C  CK    +  CP   +    N + I    C  CGVC   CP DAIK  +E
Sbjct: 594 LPVVIEDKCTGCKACILLTGCPALVYDPETNKVRIDSLLCTGCGVCNQTCPFDAIKFPSE 653

Query: 61  PG 62
             
Sbjct: 654 LE 655


>gi|197284081|ref|YP_002149953.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|227358047|ref|ZP_03842389.1| tetrathionate reductase B subunit [Proteus mirabilis ATCC 29906]
 gi|194681568|emb|CAR40516.1| anaerobic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Proteus mirabilis HI4320]
 gi|227161782|gb|EEI46814.1| tetrathionate reductase B subunit [Proteus mirabilis ATCC 29906]
          Length = 183

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            +T +C  C    C++VCP D + +  + + I   D+CI C +C   CP +A   D
Sbjct: 53  FITMSCNHCDDPQCLKVCPADTYTKRADGIVIQDHDKCIGCQMCIMACPYNAPVYD 108


>gi|94266321|ref|ZP_01290023.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93453075|gb|EAT03554.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 270

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           + V + C  C    CV VCP    Y+  + +  +    CI CG C   CP  A
Sbjct: 137 FFVPKLCNQCDKPSCVSVCPAGATYKTNDGVVLVDQSWCIGCGYCITNCPYGA 189



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 13/55 (23%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC---------GVCEPECPVDA 54
           CI C +  C+  CP    +    +  I  D+C  C           C   C   A
Sbjct: 175 CIGCGY--CITNCPYGARFFHPEWEVI--DKCTFCYHRITKGMNSACVDACAFGA 225


>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 635

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +  E CI C    C + CP D           I+PD+CI CG+C   C   AI
Sbjct: 578 LTYTINPELCIGC--HLCFKHCPADAILGDVRKPHVINPDKCIKCGMCMARCKFKAI 632



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I+P+ CI C +C   CP DAI  D     
Sbjct: 580 YTINPELCIGCHLCFKHCPADAILGDVRKPH 610


>gi|297526831|ref|YP_003668855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297255747|gb|ADI31956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 166

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           +   C+ C+   C+ VCPV+            I+ D+CI C  C   CP  AI
Sbjct: 60  IPTTCMQCEDAPCMRVCPVNAITYNPETGAYIINHDKCIGCYECVYACPFGAI 112


>gi|288931033|ref|YP_003435093.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893281|gb|ADC64818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 252

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +Y V + C  CK   CV+VCPV   Y+  + +  +    C+ C  C   CP  A
Sbjct: 113 SYFVPKLCNQCKDPPCVQVCPVGATYKTPDGVILVDEKYCLGCRYCIQACPYGA 166


>gi|308069433|ref|YP_003871038.1| Electron transport protein hydN [Paenibacillus polymyxa E681]
 gi|305858712|gb|ADM70500.1| Electron transport protein hydN [Paenibacillus polymyxa E681]
          Length = 196

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP       +  + I+ + CI C  C   CP  AI
Sbjct: 59  CRHCEDAPCANACPNGSITNADGCILINSESCIGCKTCMIACPYGAI 105


>gi|153864406|ref|ZP_01997318.1| Anaerobic dimethyl sulfoxide reductase chain B [Beggiatoa sp. SS]
 gi|152146097|gb|EDN72680.1| Anaerobic dimethyl sulfoxide reductase chain B [Beggiatoa sp. SS]
          Length = 253

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y V  +C  C    C+  CP        +N +  I    CI C  CE  CP  A + D 
Sbjct: 109 AYKVNMSCNHCAEPACLPTCPTGAIWKRQDNGVVDIDSTLCIGCRRCEAACPYGAPQFDP 168

Query: 60  EPGL 63
             GL
Sbjct: 169 NDGL 172


>gi|134298565|ref|YP_001112061.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051265|gb|ABO49236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 196

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV + C  C    CV  CP      GE    I   +C++CG C   CP  AI 
Sbjct: 80  VVGDGCTACGL--CVSACPDQAIVLGEEGPCIVESQCLNCGKCAKICPTGAIY 130


>gi|118591778|ref|ZP_01549174.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
 gi|118435771|gb|EAV42416.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
          Length = 654

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
                T C+++CP        + +++    C  CG C   CP  AI  D  P    + ++
Sbjct: 278 RKTGCTRCLDLCPTGAITPDGDHVSVDTMVCAGCGSCSAVCPSGAISYDAPPVSNTFQRL 337

Query: 70  NSEYATQW 77
            +  A  W
Sbjct: 338 QT-LAATW 344



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C LC    CV +CP     E  +   L    D C+ CG+C   CP  A+  D    L 
Sbjct: 504 DACTLCL--SCVSLCPSGALKENPDAPQLRFQEDACLQCGICTTICPEKALSLDPRLDLS 561

Query: 65  L 65
            
Sbjct: 562 D 562


>gi|86159508|ref|YP_466293.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776019|gb|ABC82856.1| tetrathionate reductase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 274

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++ V + C  C+ T C++VCPV   Y   + +  +  + CI C  C   CP  
Sbjct: 140 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGVVLVDGERCIGCAYCVQACPFG 192


>gi|332800507|ref|YP_004462006.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332698242|gb|AEE92699.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
          Length = 382

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPDTEPGLE 64
           + CI C    CV+VCP        + + I    C+ CG C   C   A I P TE G +
Sbjct: 197 DKCIRCGQ--CVDVCPHGAIKLMNDCIVIDKSICVKCGRCSRVCEAKALIVPITEEGFQ 253


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  E C  C  T C   CPV+      +N   I P++CI CGVC  +C  DA+ 
Sbjct: 541 YIDAEKCKGC--TLCARNCPVNAISGSVKNPHVIDPEKCIKCGVCMEKCKFDAVY 593



 Score = 40.9 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I  ++C  C +C   CPV+AI
Sbjct: 529 CPAG-VCKALLSYYIDAEKCKGCTLCARNCPVNAI 562


>gi|158334537|ref|YP_001515709.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acaryochloris marina MBIC11017]
 gi|158304778|gb|ABW26395.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Acaryochloris
          marina MBIC11017]
          Length = 75

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C +EG        ++  I    CIDCG+C+  CPV
Sbjct: 1  MAHTIVTDVCEGI--ADCVDACPVACIHEGPGKNVIGTDWYWIDFSTCIDCGICQQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          D AI  +    L+ 
Sbjct: 59 DGAILAEERSDLQK 72


>gi|94967486|ref|YP_589534.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549536|gb|ABF39460.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 729

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   CP        +       D+CI C  C   CP     P+ +
Sbjct: 86  CLHCLEPACTSACPTTALARMADGPVGYDADKCIGCRYCVWACPWGVPTPEWD 138


>gi|167622043|ref|YP_001672337.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352065|gb|ABZ74678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 559

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V TENC LC    CV  CP     +G +  A+H    +C+ CG+CE  CP   I
Sbjct: 424 VNTENCTLC--MSCVSTCPTMALTDGGDLPALHFVEQDCVQCGLCETACPEKVI 475



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 18/49 (36%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+  CP D     E  + I P  C   G C   CP  AI  D     
Sbjct: 197 TRCLNFCPADAIASIEKKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 245


>gi|319785595|ref|YP_004145071.1| DMSO reductase chain B [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171483|gb|ADV15021.1| DMSO reductase chain B [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 244

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +    + +  I  D+CI C +C   CP  A + DT+ G
Sbjct: 80  SCLHCETPACVTVCPTGASYKRASDGIVLIDEDKCIGCKLCSWACPYGAREFDTDVG 136


>gi|317489629|ref|ZP_07948133.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830197|ref|ZP_08163654.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316911223|gb|EFV32828.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487664|gb|EGC90102.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 209

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    CV  CP     + E    +    + CI C  C+  CP DA   D E
Sbjct: 62  YFVSMACNHCVDPACVANCPTGAMQKDEETGIVWTDHEVCIGCKTCQTVCPYDAPTYDDE 121

Query: 61  PG 62
            G
Sbjct: 122 AG 123


>gi|149920260|ref|ZP_01908731.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
 gi|149818847|gb|EDM78287.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
          pacifica SIR-1]
          Length = 96

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +TE CI C    C   CP +   EGE    I P+ C +C        C+  CPV+ 
Sbjct: 1  MATHITEECINCG--ACEPECPNEAISEGEEIYVIDPNLCTECVGFHEYEACQAVCPVEC 58

Query: 55 IKPDTE 60
            PD E
Sbjct: 59 CLPDPE 64


>gi|148242469|ref|YP_001227626.1| ferredoxin [Synechococcus sp. RCC307]
 gi|147850779|emb|CAK28273.1| Ferredoxin [Synechococcus sp. RCC307]
          Length = 74

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCGVCEPECPVD 53
          M + +  N +     DCV+ CPV C + G+        F  I    CIDCG+C   CPV+
Sbjct: 1  MAHTIVTN-VCEGIADCVDACPVACIHPGQGANTKGTGFYWIDFQTCIDCGICLQVCPVE 59

Query: 54 -AIKPDTEPGLE 64
           AI P+  P L+
Sbjct: 60 GAIVPEERPDLQ 71


>gi|94269933|ref|ZP_01291606.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93451006|gb|EAT01977.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 270

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           + V + C  C    CV VCP    Y+  + +  +    CI CG C   CP  A
Sbjct: 137 FFVPKLCNQCDKPSCVSVCPAGATYKTNDGVVLVDQSWCIGCGYCITNCPYGA 189



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 13/55 (23%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC---------GVCEPECPVDA 54
           CI C +  C+  CP    +    +  I  D+C  C           C   C   A
Sbjct: 175 CIGCGY--CITNCPYGARFFHPEWEVI--DKCTFCYHRITKGMNSACVDACAFGA 225


>gi|78355728|ref|YP_387177.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218133|gb|ABB37482.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 285

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            C+ C+   CVE CP    ++      + I P  CI CG C P CP  A
Sbjct: 60  ACMHCESPTCVEACPTGATWKDRETGIVEIDPALCIGCGNCIPACPYGA 108


>gi|332289789|ref|YP_004420641.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
 gi|330432685|gb|AEC17744.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
          Length = 202

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-T 59
            ++  E CI C  T C++ CPVD        L  + PD C  C +C   CP D I  +  
Sbjct: 112 AFIHEEMCIGC--TKCIQACPVDAIIGANKALHTVIPDLCTGCELCVAPCPTDCITMEKV 169

Query: 60  EPGLELW 66
           +P L+ W
Sbjct: 170 KPSLDSW 176



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 22  PVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           P   F E        IH + CI C  C   CPVDAI
Sbjct: 99  PQGVFEEEPVPKVAFIHEEMCIGCTKCIQACPVDAI 134


>gi|269104673|ref|ZP_06157369.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161313|gb|EEZ39810.1| anaerobic dimethyl sulfoxide reductase chain B [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 207

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y V+ +C  C    C + CP    +  E +  + +    C+ C  CE  CP  A + ++
Sbjct: 61  AYYVSISCNHCSQPACTKACPTGAMHKREQDGLVVVDEQVCVGCRYCEMACPYGAPQYNS 120

Query: 60  E 60
           E
Sbjct: 121 E 121


>gi|332978350|gb|EGK15075.1| electron transport complex [Psychrobacter sp. 1501(2011)]
          Length = 275

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD        +  I  D C  C +C P CPVD I
Sbjct: 113 DDCIGC--TKCIPACPVDAIVGTGKHMHTIISDLCTGCELCLPPCPVDCI 160



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 22  PVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PVD       E    I  D+CI C  C P CPVDAI
Sbjct: 95  PVDPNTHRPTEVRAVIREDDCIGCTKCIPACPVDAI 130


>gi|218782798|ref|YP_002434116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764182|gb|ACL06648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 361

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C +  C V    EG++   + P+ CI CG+C   CP +AI    +P  E
Sbjct: 278 DECVACGV--CADERCQVRAIEEGDDAYRVKPEACIGCGLCVSTCPSEAISLIRKPEEE 334



 Score = 40.9 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 34  AIHPDECIDCGVCEPE-CPVDAIKPDTEP 61
            I PDEC+ CGVC  E C V AI+   + 
Sbjct: 274 VIDPDECVACGVCADERCQVRAIEEGDDA 302


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           +TY +V + C+ C    C++ CPV     GE   A  I   +C+ CG C P+C  DAI
Sbjct: 560 LTYAIVEDKCVGCGV--CIKACPVGAIT-GEKKAAHTIDASKCVKCGACVPKCKFDAI 614



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            AI  D+C+ CGVC   CPV AI  + +   
Sbjct: 562 YAIVEDKCVGCGVCIKACPVGAITGEKKAAH 592


>gi|15602588|ref|NP_245660.1| TTRB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721017|gb|AAK02807.1| TtrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   Y+ ++ + +   + CI C  C   CP DA  I  +T+   +
Sbjct: 99  CNHCDNPPCVPVCPVQATYQRKDGIVVVDNERCIGCAYCVQACPYDARFINEETKTADK 157


>gi|311279771|ref|YP_003942002.1| hydrogenase 2 protein HybA [Enterobacter cloacae SCF1]
 gi|308748966|gb|ADO48718.1| hydrogenase 2 protein HybA [Enterobacter cloacae SCF1]
          Length = 340

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +  +PD C  C  C   CP +  K D +
Sbjct: 114 IKKQCMHCVDPNCVSVCPVQAMQKDPKTGIVHYNPDVCTGCRYCMVGCPFNVPKYDYD 171


>gi|167625914|ref|YP_001676208.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355936|gb|ABZ78549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 231

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           V   C  C +  CV VCPV+  Y+ +    + I+ DECI C +C   CP  A
Sbjct: 84  VPNQCNQCDNPACVYVCPVEATYKRKEDGIVVINHDECIHCQLCVDACPYGA 135


>gi|145591167|ref|YP_001153169.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282935|gb|ABP50517.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 188

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  CV VCP    Y+  + L  I P+ CI C  C   CP +A   D   GL  
Sbjct: 63  CQHCENAPCVIVCPTGASYKDVDGLVKIKPELCIGCKYCMVACPYEARWLDERTGLPQ 120


>gi|159041649|ref|YP_001540901.1| thiamine pyrophosphate binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157920484|gb|ABW01911.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Caldivirga maquilingensis IC-167]
          Length = 606

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEP 61
           V  + C  C     +  CP     E      I P+ C+ C VC   CP +AIKP  + + 
Sbjct: 540 VDPDACKACGICYNLIACPAIAPLE-NRKAWIDPNMCVGCSVCAQVCPYNAIKPSGNAKE 598

Query: 62  GLELWLKI 69
            L+ W ++
Sbjct: 599 WLDKWAEM 606


>gi|113461042|ref|YP_719109.1| tetrathionate reductase subunit B [Haemophilus somnus 129PT]
 gi|112823085|gb|ABI25174.1| tetrathionate reductase beta subunit [Haemophilus somnus 129PT]
          Length = 245

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   Y+ ++ +  I    CI C  C   CP DA  I  +T+   +
Sbjct: 99  CNHCDNPPCVPVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSETKTADK 157


>gi|52549648|gb|AAU83497.1| Fe-S cluster binding protein [uncultured archaeon GZfos29E12]
          Length = 133

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  C +VCP D          I   D+CI CG C   C + AI  D E  
Sbjct: 54  CRACEYPPCAKVCPTDALRLRNGGGVILDKDKCIGCGFCAQACIMGAIFWDDELD 108


>gi|71065390|ref|YP_264117.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
 gi|71038375|gb|AAZ18683.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
          Length = 280

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 123 DDCIGC--TKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCI 170



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  D+CI C  C P CPVDAI
Sbjct: 119 VIREDDCIGCTKCIPACPVDAI 140


>gi|238757228|ref|ZP_04618415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia aldovae ATCC
          35236]
 gi|238704606|gb|EEP97136.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia aldovae ATCC
          35236]
          Length = 158

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 32 TIMCRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 80


>gi|222625883|gb|EEE60015.1| hypothetical protein OsJ_12764 [Oryza sativa Japonica Group]
          Length = 815

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 714 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 770



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 695 PLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEERED 740



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 755 CIYCGF--CQEACPVDAIVEGPNF 776


>gi|319425005|gb|ADV53079.1| tetrathionate reductase, 4Fe-4S ferredoxin subunit, TtrB
           [Shewanella putrefaciens 200]
          Length = 260

 Score = 57.5 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|322641062|gb|EFY37706.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
          Length = 205

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++ 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|300854908|ref|YP_003779892.1| putative electron transport protein [Clostridium ljungdahlii DSM
           13528]
 gi|300435023|gb|ADK14790.1| predicted electron transport protein [Clostridium ljungdahlii DSM
           13528]
          Length = 193

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV    + +N + +  + CI C  C   CP  A
Sbjct: 61  CRQCEDAPCANVCPVRAISQLDNKIVVDTEACIGCKTCIMACPFGA 106


>gi|217974827|ref|YP_002359578.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217499962|gb|ACK48155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 260

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|160876964|ref|YP_001556280.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862486|gb|ABX51020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269167|gb|ADT96020.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 260

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|219669808|ref|YP_002460243.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540068|gb|ACL21807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 162

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T VV   C  C+   CV+VCP    Y+ E  + ++ + CI C +C   CP  +I   TE
Sbjct: 56  TTVVLTQCRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCARACPFGSITMTTE 114


>gi|261823787|ref|YP_003261893.1| oxidoreductase Fe-S binding subunit [Pectobacterium wasabiae
           WPP163]
 gi|261607800|gb|ACX90286.1| glutamate synthase, small subunit [Pectobacterium wasabiae WPP163]
          Length = 674

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       +N + +  ++CI C  C   CP  A+   T P
Sbjct: 56  CRHCEDAPCAGVCPTQALIRKDNSIQLVQEKCIGCKSCVLACPFGAMSMVTNP 108


>gi|212633603|ref|YP_002310128.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212555087|gb|ACJ27541.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 214

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           T+  +  C  C    CV  CPV   + E +  L   + D+CI C +C   CP DA + DT
Sbjct: 71  THYTSIGCNHCSEPVCVSTCPVGAMHKEQDTGLVKTNDDKCIGCNMCAQACPYDAPQMDT 130

Query: 60  E 60
           E
Sbjct: 131 E 131


>gi|218962108|ref|YP_001741883.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730765|emb|CAO81677.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 374

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E C  C    CV+ CPV     + +    IH ++CI C  C   CP  AI
Sbjct: 313 VSERCKQCG--ICVKSCPVKAISWQNDTKPYIHKEQCIKCLCCHELCPYQAI 362


>gi|322632472|gb|EFY29218.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
          Length = 162

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++ 
Sbjct: 17 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSA 76

Query: 61 PGL 63
           G 
Sbjct: 77 KGH 79


>gi|303257094|ref|ZP_07343108.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|331000953|ref|ZP_08324590.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|302860585|gb|EFL83662.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|329569912|gb|EGG51669.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 211

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C  C +  C+ VCP    Y+G +    +   +CI CG C   CP  A K +       W
Sbjct: 55  SCQHCDNPACLPVCPAKAIYKGPHGEVLVDQSKCISCGACAMACPYGAPKFNRSGKTSYW 114


>gi|238799475|ref|ZP_04642883.1| Electron transport protein hydN [Yersinia mollaretii ATCC 43969]
 gi|238716677|gb|EEQ08585.1| Electron transport protein hydN [Yersinia mollaretii ATCC 43969]
          Length = 158

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 32 TIMCRHCEDAPCANVCPNGAIIRAADSIQVLQEKCIGCKTCVVACPYGA 80


>gi|254471603|ref|ZP_05085005.1| nitrate reductase beta chain [Pseudovibrio sp. JE062]
 gi|211959749|gb|EEA94947.1| nitrate reductase beta chain [Pseudovibrio sp. JE062]
          Length = 239

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V+   C  C    C+ VCPV+  F   E  + +  ++C+ CG C   CP +A
Sbjct: 83  VLPRLCNHCDEPPCIPVCPVNATFKTDEGAVVVDAEQCVACGYCVQACPYEA 134


>gi|85857990|ref|YP_460192.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
 gi|85721081|gb|ABC76024.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
          Length = 265

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    CV+VCP    Y  E     I+  +CI C  C   CP D  + + E  
Sbjct: 74  DGCMHCTDAACVKVCPSGALYHTEYGTVGINQAKCIGCKYCISACPFDVPRYNPETD 130


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C+ C  T C   CPV     E +    +H ++CI CG C   C   AIK D
Sbjct: 567 VIEEKCVGC--TACKRACPVGAITGEVKQKHFVHQEKCIKCGQCFSACKFSAIKKD 620



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CP         +  I  ++C+ C  C+  CPV AI  + +   + ++
Sbjct: 554 CPTGKCSSLVRYSVI-EEKCVGCTACKRACPVGAITGEVK--QKHFV 597


>gi|156933919|ref|YP_001437835.1| hypothetical protein ESA_01745 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532173|gb|ABU76999.1| hypothetical protein ESA_01745 [Cronobacter sakazakii ATCC BAA-894]
          Length = 205

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ E+ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|6644291|gb|AAF20994.1|AF208000_2 ferrodoxin [Pseudomonas syringae pv. syringae]
          Length = 38

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 68  KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
           ++N+E A  WPNIT KK+++P AA+ DG   K    
Sbjct: 1   ELNAELAEIWPNITEKKDAMPDAAEWDGKTGKIADL 36


>gi|78223444|ref|YP_385191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78194699|gb|ABB32466.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 371

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C + CPV         L I  ++CI CG+C   CP  AI        +    
Sbjct: 299 CIACGL--CAKRCPVRGVTSIMGPLHISEEKCIGCGLCVTTCPTQAISLKERQTYQEPFD 356

Query: 69  INSEYATQW 77
              +    W
Sbjct: 357 TGRQLFAAW 365


>gi|320085202|emb|CBY94988.1| Protein nrfC Flags: Precursor [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 205

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|317054472|ref|YP_004118497.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pantoea sp. At-9b]
 gi|316952467|gb|ADU71941.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp.
          At-9b]
          Length = 201

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++ + C+ C +C   CP  AI+ 
Sbjct: 49 QLCRHCEDAPCASVCPVNAITRVDGAVQLNANLCVSCKLCGIACPFGAIEF 99


>gi|149375891|ref|ZP_01893658.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
 gi|149359771|gb|EDM48228.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
          Length = 659

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T C++VCP +  +   + + I  D C  CG C   CP  AI  +  P
Sbjct: 292 TRCLDVCPTEAIFSFGDHVQIDSDICAGCGSCAAVCPTSAITMNESP 338



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           ++ C LC    CV +CP     +  +   +    + C+ CGVCE  CP  AI
Sbjct: 512 SDKCTLCL--ACVSLCPTGALGDHPDRPEVQFTENACVQCGVCESTCPETAI 561



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           + I  D+C  C  C   CP  A+    +     + + N+
Sbjct: 508 IEIDSDKCTLCLACVSLCPTGALGDHPDRPEVQFTE-NA 545


>gi|123441922|ref|YP_001005905.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088883|emb|CAL11690.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 244

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ ++ +  I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|242239951|ref|YP_002988132.1| hydrogenase 2 protein HybA [Dickeya dadantii Ech703]
 gi|242132008|gb|ACS86310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 338

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +H D   C  C  C   CP +  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFNVPKYDYENP 172

Query: 63  L 63
           L
Sbjct: 173 L 173


>gi|168236599|ref|ZP_02661657.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736674|ref|YP_002113729.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712176|gb|ACF91397.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290426|gb|EDY29782.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 185

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|20093705|ref|NP_613552.1| heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus
           kandleri AV19]
 gi|41017082|sp|P96801|HDRA2_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A 2
 gi|1890204|emb|CAA70999.1| heterodisulfide reductase [Methanopyrus kandleri]
 gi|19886593|gb|AAM01482.1| Heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus
           kandleri AV19]
          Length = 656

 Score = 57.5 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCG 44
           YV  + C  C    C EVCP++   E +  L                   I  + CI CG
Sbjct: 242 YVDEDACTGCG--ACAEVCPIEVPNEFDEGLGMRKAIYKPFPQAVPSVFTIDEEHCIRCG 299

Query: 45  VCEPECPVDAIKPDTEPG 62
           +CE  C  DAI  D EP 
Sbjct: 300 LCEEVCDADAIDFDQEPE 317



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLA--IHPDECIDCGVCEPECPVDAIKPDT 59
           V  E C  C    CVE+CP       E +  L   +    C  CG C   CP  A++ + 
Sbjct: 581 VDEEICGGCG--TCVELCPYGAIELVEKDGKLVAEVTAALCKGCGTCAAACPSGAMEQNH 638

Query: 60  EPGLELWLKI 69
               +L+ +I
Sbjct: 639 FKTEQLYKQI 648


>gi|332162126|ref|YP_004298703.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606176|emb|CBY27674.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666356|gb|ADZ43000.1| tetrathionate reductase subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330864031|emb|CBX74110.1| hypothetical protein YEW_AE00950 [Yersinia enterocolitica W22703]
          Length = 244

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ ++ +  I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|307131796|ref|YP_003883812.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Dickeya dadantii
           3937]
 gi|306529325|gb|ADM99255.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Dickeya dadantii
           3937]
          Length = 338

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +H D   C  C  C   CP +  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASVCTGCRYCMVACPFNVPKYDYENP 172

Query: 63  L 63
           L
Sbjct: 173 L 173


>gi|293396834|ref|ZP_06641108.1| anaerobic dimethyl sulfoxide reductase subunit B [Serratia
           odorifera DSM 4582]
 gi|291420305|gb|EFE93560.1| anaerobic dimethyl sulfoxide reductase subunit B [Serratia
           odorifera DSM 4582]
          Length = 205

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++  C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSIACNHCEQPACTQVCPTGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|260773217|ref|ZP_05882133.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
 gi|260612356|gb|EEX37559.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
          Length = 195

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPL 164

Query: 58  DTEPGLELWLKINS 71
           +T P    W ++N+
Sbjct: 165 ETTPETWKW-QMNA 177


>gi|257790195|ref|YP_003180801.1| dimethylsulfoxide reductase, chain B [Eggerthella lenta DSM 2243]
 gi|257474092|gb|ACV54412.1| dimethylsulfoxide reductase, chain B [Eggerthella lenta DSM 2243]
          Length = 206

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+  C  C    C+  CP     +  +   +   P++CI CG C   CP  A K D E
Sbjct: 60  YYVSVACNHCDSPACMAKCPQGAISKDPDTGIVNNDPEKCIGCGTCAIACPYSAPKVDEE 119


>gi|167551945|ref|ZP_02345698.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323310|gb|EDZ11149.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|156974867|ref|YP_001445774.1| hypothetical protein VIBHAR_02586 [Vibrio harveyi ATCC BAA-1116]
 gi|156526461|gb|ABU71547.1| hypothetical protein VIBHAR_02586 [Vibrio harveyi ATCC BAA-1116]
          Length = 257

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV VCP    Y+ E+ L  +  D+C  CG C   CP  A
Sbjct: 99  CNHCETPSCVPVCPTGATYKREDGLVLVDSDKCWGCGSCVTACPYGA 145


>gi|153002240|ref|YP_001367921.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151366858|gb|ABS09858.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 260

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|84488976|ref|YP_447208.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
 gi|84372295|gb|ABC56565.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
          Length = 59

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y + +NC+ C    CV  CP+D   EG N   I  ++C+ CGVC   CP  AI+ 
Sbjct: 5  PYKINDNCVACGL--CVNACPIDAIAEG-NPYVIDEEKCVGCGVCAEACPTQAIEE 57


>gi|323701313|ref|ZP_08112988.1| nitrite and sulphite reductase 4Fe-4S region [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533915|gb|EGB23779.1| nitrite and sulphite reductase 4Fe-4S region [Desulfotomaculum
           nigrificans DSM 574]
          Length = 232

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +   C +C    CV  CP DC   GE    I    C++CG C  +CP  AIK
Sbjct: 94  IGAGCTMCGL--CVAACPDDCIVLGEAGPIIDRQVCLNCGKCAAKCPTGAIK 143


>gi|261253250|ref|ZP_05945823.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio orientalis
           CIP 102891]
 gi|260936641|gb|EEX92630.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio orientalis
           CIP 102891]
          Length = 209

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    +  E + F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|154498762|ref|ZP_02037140.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
          29799]
 gi|150272152|gb|EDM99356.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
          29799]
          Length = 447

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C  T C++ CP +         AI    CIDCGVC   CP  AIK  ++P
Sbjct: 15 CRGC--TTCIKSCPTEAIRVRNGKAAILNARCIDCGVCIQVCPHKAIKSISDP 65


>gi|170726214|ref|YP_001760240.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169811561|gb|ACA86145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 682

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D   G
Sbjct: 164 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLDPVKG 223

Query: 63  L 63
            
Sbjct: 224 Q 224


>gi|11466585|ref|NP_066475.1| NADH dehydrogenase subunit 8 [Rhodomonas salina]
 gi|10444172|gb|AAG17746.1|AF288090_22 NADH dehydrogenase subunit 8 [Rhodomonas salina]
          Length = 162

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E+            I   +CI CG+C+  CPVDAI 
Sbjct: 61  ERCIACKL--CEAVCPAQAITIETESRADNSRKTSRYDIDMTKCIFCGLCQEACPVDAIV 118

Query: 57  PDTEPGLELWLKIN 70
                   ++ + N
Sbjct: 119 EGPNYEYSVFKRQN 132


>gi|146291769|ref|YP_001182193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563459|gb|ABP74394.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 260

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|67925387|ref|ZP_00518736.1| 4Fe-4S ferredoxin, iron-sulfur binding [Crocosphaera watsonii WH
          8501]
 gi|67852761|gb|EAM48171.1| 4Fe-4S ferredoxin, iron-sulfur binding [Crocosphaera watsonii WH
          8501]
          Length = 75

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DC + CPV C ++G        ++  I  D CIDCG+C   CPV
Sbjct: 1  MPHTIVTEVCEGI--ADCADACPVACIHDGPGKNIKGTDWYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAIAPEERPDLQK 72


>gi|270263094|ref|ZP_06191364.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Serratia odorifera 4Rx13]
 gi|270042782|gb|EFA15876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Serratia odorifera 4Rx13]
          Length = 205

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   CV+VCPV+     +N + ++   C+ C +C   CP  AI
Sbjct: 51 CRQCEDAPCVQVCPVNAITHQDNAIVLNESLCVSCKLCGIACPFGAI 97


>gi|268324769|emb|CBH38357.1| conserved hypothetical protein, 4Fe-4S binding domain family
           [uncultured archaeon]
          Length = 133

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C++  C +VCP D     +    I + D+CI CG C   C + AI  D E  
Sbjct: 54  CRACEYPPCAKVCPTDALRLRKGGGVILNKDKCIGCGFCAQACIMGAIFWDDELD 108


>gi|332289328|ref|YP_004420180.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432224|gb|AEC17283.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 241

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   + + +  + I  + C+ C  C   CP DA  I  +T+   +
Sbjct: 97  CNHCDNPPCVPVCPVQATYQQKDGIVVIDNERCVGCAYCVQACPYDARFINEETKTADK 155


>gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
 gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
          Length = 586

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 2   TYVVTEN-CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           TY + E  C+ C  T C + CPV+        +  I  ++CI CG C   C  DA+  D
Sbjct: 530 TYSIDEEKCVGC--TRCAKNCPVEAISGAPKKVHVIDQEKCIKCGKCASVCKFDAVTVD 586


>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 595

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C    C   CPV            I P++C  C  C  +CP  AI+
Sbjct: 543 IIPEECKKCGL--CARECPVGAIKGKPRETHEIDPEKCTKCEACLKKCPFGAIR 594



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +VCP     +  + + I P+EC  CG+C  ECPV AIK
Sbjct: 528 KVCPAG-VCKKLSRIRIIPEECKKCGLCARECPVGAIK 564


>gi|283787133|ref|YP_003366998.1| hydrogenase-2 subunit [Citrobacter rodentium ICC168]
 gi|282950587|emb|CBG90256.1| hydrogenase-2 subunit [Citrobacter rodentium ICC168]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +  + D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYNKDVCTGCRYCMVACPYNVPKYD 163


>gi|152992104|ref|YP_001357825.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
 gi|151423965|dbj|BAF71468.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
          Length = 251

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C  +CPV   +  EN +  +    CI C  C   CP  AI  D E
Sbjct: 57  CNHCESAPCERICPVSALHYLENGIVNVDSSRCIGCAGCMMACPYGAIYMDPE 109



 Score = 40.5 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 14/72 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V +  CI C    C+  CP    Y          D+C  C           C   CPV A
Sbjct: 84  VDSSRCIGCAG--CMMACPYGAIYMDPETNT--ADKCTYCAHRIESGMMPACVVICPVQA 139

Query: 55  -IKPDTEPGLEL 65
            I  D +     
Sbjct: 140 NIFGDIDDDTSH 151


>gi|71909583|ref|YP_287170.1| hydrogenase 2 protein HybA [Dechloromonas aromatica RCB]
 gi|71849204|gb|AAZ48700.1| Twin-arginine translocation pathway signal [Dechloromonas aromatica
           RCB]
          Length = 351

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLA-IHPDECIDCGVCEPECPVD 53
           +C+ C    CV  CPV    +  E  +    PD CI C  C   CP  
Sbjct: 114 SCMHCADPSCVSACPVSAMTKNLETGIVGYDPDACIGCRYCVAACPFG 161


>gi|297544307|ref|YP_003676609.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296842082|gb|ADH60598.1| Fe-S cluster domain protein [Thermoanaerobacter mathranii subsp.
          mathranii str. A3]
          Length = 435

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 12 DRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|257068147|ref|YP_003154402.1| formate dehydrogenase beta subunit [Brachybacterium faecium DSM
           4810]
 gi|256558965|gb|ACU84812.1| formate dehydrogenase beta subunit [Brachybacterium faecium DSM
           4810]
          Length = 333

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++ C  C +  C++VCP    +  E+  + +  D C  CG C   CP   I+   +  + 
Sbjct: 138 SDVCKHCTNAGCLDVCPTGAIFRSEHGSVVVQEDVCNGCGTCVSACPFGVIERRDDGTVS 197

Query: 65  LW 66
            +
Sbjct: 198 PY 199


>gi|220915989|ref|YP_002491293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953843|gb|ACL64227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 310

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C+   C+E CP       E   + I PD C  CG C   CP   +
Sbjct: 127 SDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVV 177


>gi|78355523|ref|YP_386972.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217928|gb|ABB37277.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 164

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C  +CP       E  + +    CI C +C   CPV AI+
Sbjct: 59  CRQCADAPCAAICPRGAIRMAEGVVTVDSGLCIGCKMCMVACPVGAIE 106


>gi|270297051|ref|ZP_06203250.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273038|gb|EFA18901.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 486

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP    +  E     I  D CI CG+C   CP  AI  
Sbjct: 116 YEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVY 171



 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E  +  I   +CI CG C   CP
Sbjct: 152 DACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCLNACP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAIFE 217


>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 596

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           +++V+  E C  C    C + CPV            I  ++CI CG C  +CP  AI 
Sbjct: 539 LSFVIDPEKCKACG--ICAKNCPVGAISGKPKTPYVIDQEKCIKCGTCIDKCPFGAIY 594


>gi|238789244|ref|ZP_04633031.1| Tetrathionate reductase subunit B [Yersinia frederiksenii ATCC
           33641]
 gi|238722576|gb|EEQ14229.1| Tetrathionate reductase subunit B [Yersinia frederiksenii ATCC
           33641]
          Length = 244

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ ++ +  I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|332299925|ref|YP_004441846.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176988|gb|AEE12678.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y V+  C  C    C   CP  C    +N    I  + CI CG C   CP  AI  
Sbjct: 115 YEVSNLCRGCVSRACSSNCPKSCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVY 170



 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           E CI C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 151 EICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCLNACP 210

Query: 52  VDAIKP 57
             AI  
Sbjct: 211 FGAIFE 216


>gi|317486152|ref|ZP_07944996.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922601|gb|EFV43843.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 265

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV VCP    F   +  + + P  CI C  C   CP  A   +         
Sbjct: 128 CNHCENPPCVRVCPTAATFKREDGIVVMDPHRCIGCRFCMAGCPFGARSFNFRDPQPYVK 187

Query: 68  KINSEYATQWPNITTKK 84
            +N E+  +   +  K 
Sbjct: 188 DVNPEFPMRTRGVVEKC 204


>gi|331664613|ref|ZP_08365519.1| hydrogenase-2 operon protein HybA [Escherichia coli TA143]
 gi|331058544|gb|EGI30525.1| hydrogenase-2 operon protein HybA [Escherichia coli TA143]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|262372076|ref|ZP_06065355.1| electron transport complex protein [Acinetobacter junii SH205]
 gi|262312101|gb|EEY93186.1| electron transport complex protein [Acinetobacter junii SH205]
          Length = 266

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGL 63
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I   PD  P  
Sbjct: 93  DECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVPDNNPIP 150

Query: 64  ELWLKINSE 72
               +IN +
Sbjct: 151 TEDQRINEQ 159



 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 90  IREDECIGCTKCISACPVDAI 110


>gi|260769814|ref|ZP_05878747.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio furnissii
           CIP 102972]
 gi|260615152|gb|EEX40338.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio furnissii
           CIP 102972]
 gi|315182188|gb|ADT89101.1| dimethylsulfoxide reductase, chain B [Vibrio furnissii NCTC 11218]
          Length = 209

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  CV+VCP    ++ +    + +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCSNPACVKVCPSGAMHKRDEDGLVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|50842000|ref|YP_055227.1| anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           acnes KPA171202]
 gi|289424433|ref|ZP_06426216.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK187]
 gi|289428460|ref|ZP_06430146.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J165]
 gi|295130080|ref|YP_003580743.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK137]
 gi|50839602|gb|AAT82269.1| anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           acnes KPA171202]
 gi|289155130|gb|EFD03812.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK187]
 gi|289158432|gb|EFD06649.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J165]
 gi|291377031|gb|ADE00886.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           SK137]
 gi|313772641|gb|EFS38607.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL074PA1]
 gi|313792894|gb|EFS40961.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA1]
 gi|313802652|gb|EFS43874.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA2]
 gi|313806667|gb|EFS45174.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL087PA2]
 gi|313810863|gb|EFS48577.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL083PA1]
 gi|313814626|gb|EFS52340.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL025PA1]
 gi|313817210|gb|EFS54924.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL046PA2]
 gi|313821728|gb|EFS59442.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL036PA1]
 gi|313824381|gb|EFS62095.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL036PA2]
 gi|313826739|gb|EFS64453.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL063PA1]
 gi|313831983|gb|EFS69697.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL007PA1]
 gi|313834477|gb|EFS72191.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL056PA1]
 gi|313840290|gb|EFS78004.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL086PA1]
 gi|314926833|gb|EFS90664.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL036PA3]
 gi|314961261|gb|EFT05362.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL002PA2]
 gi|314964311|gb|EFT08411.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL082PA1]
 gi|314974479|gb|EFT18574.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL053PA1]
 gi|314977330|gb|EFT21425.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL045PA1]
 gi|314980513|gb|EFT24607.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL072PA2]
 gi|314985570|gb|EFT29662.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA1]
 gi|314987527|gb|EFT31618.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA2]
 gi|314989008|gb|EFT33099.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA3]
 gi|315078673|gb|EFT50704.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL053PA2]
 gi|315081867|gb|EFT53843.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL078PA1]
 gi|315086349|gb|EFT58325.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL002PA3]
 gi|315087598|gb|EFT59574.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL072PA1]
 gi|315097548|gb|EFT69524.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL038PA1]
 gi|315106566|gb|EFT78542.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL030PA1]
 gi|327331599|gb|EGE73338.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL096PA2]
 gi|327333581|gb|EGE75301.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL096PA3]
 gi|327335107|gb|EGE76818.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL097PA1]
 gi|327445391|gb|EGE92045.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL013PA2]
 gi|327447006|gb|EGE93660.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL043PA1]
 gi|327449958|gb|EGE96612.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL043PA2]
 gi|327456851|gb|EGF03506.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL092PA1]
 gi|328758637|gb|EGF72253.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL020PA1]
 gi|328761729|gb|EGF75244.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL099PA1]
 gi|332674921|gb|AEE71737.1| anaerobic dimethyl sulfoxide reductase chain B [Propionibacterium
           acnes 266]
          Length = 213

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|294636934|ref|ZP_06715260.1| anaerobic dimethyl sulfoxide reductase, B subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089852|gb|EFE22413.1| anaerobic dimethyl sulfoxide reductase, B subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 121

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    CV+VCP    ++ E+ F+ +    CI C  C   CP  A + + +
Sbjct: 60  AYYLSISCNHCDDPACVKVCPSGAMHKREDGFVVVDESVCIGCRYCHMACPYGAPQYNAQ 119

Query: 61  PG 62
            G
Sbjct: 120 KG 121


>gi|289578036|ref|YP_003476663.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527749|gb|ADD02101.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9]
          Length = 435

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 12 DRCRGC--TNCIKRCPTEAIRVRDGKARIINERCIDCGECIRVCPYHA 57


>gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
 gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
          Length = 628

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V++ E C  C  + C   CP        +    I    CI CG CE  C   AI  +
Sbjct: 572 FVISPERCRGC--SKCARNCPAGAISGKIKEPYVIDDTRCIKCGACESACAFGAIHIE 627



 Score = 41.7 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 13/55 (23%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M +VV + C+          C             I P+ C  C  C   CP  AI
Sbjct: 553 MEHVVEKKCVS-------HTC------TALRRFVISPERCRGCSKCARNCPAGAI 594


>gi|315082639|gb|EFT54615.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL027PA2]
          Length = 213

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|312968672|ref|ZP_07782881.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 2362-75]
 gi|312286890|gb|EFR14801.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 2362-75]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|237706257|ref|ZP_04536738.1| hydrogenase-2 operon protein hybA [Escherichia sp. 3_2_53FAA]
 gi|226899297|gb|EEH85556.1| hydrogenase-2 operon protein hybA [Escherichia sp. 3_2_53FAA]
 gi|323957853|gb|EGB53567.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|288549934|ref|ZP_05968681.2| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
 gi|288317249|gb|EFC56187.1| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
          Length = 290

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 5  VTENCI-----LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+           C +VCP   F   +  + I P  CI+CG C   CP DAI
Sbjct: 11 VTQACVRRRFRHASCHACADVCPAQAFSVTDGQVTIDPSRCIECGDCLFVCPTDAI 66



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDTEPG 62
           TE CILC    C   CP       +N L +    C  CG CE  CP  AIK    + E  
Sbjct: 189 TEKCILCG--ACWRSCPEKAIRFEDNALVMENARCTGCGGCEAVCPSHAIKVMPAEGEAQ 246

Query: 63  LELWLK 68
              W  
Sbjct: 247 QHTWEA 252



 Score = 33.6 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEP 61
             ++CI CG C   CP  AI+ +   
Sbjct: 188 DTEKCILCGACWRSCPEKAIRFEDNA 213


>gi|182420185|ref|ZP_02951416.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237667529|ref|ZP_04527513.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182375987|gb|EDT73577.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237655877|gb|EEP53433.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 421

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAIHPDECIDCGVCEPECPVDAIK 56
            YV T  CI C    C  +CP++         + +  +    C+ CGVC   CP DAIK
Sbjct: 287 PYVDTHKCIGCG--KCTNICPMEAIGVTTIGKDKYAKVDDKLCLGCGVCVKNCPKDAIK 343


>gi|82778235|ref|YP_404584.1| hydrogenase 2 protein HybA [Shigella dysenteriae Sd197]
 gi|309785172|ref|ZP_07679803.1| twin-arginine translocation pathway signal sequence domain protein
           [Shigella dysenteriae 1617]
 gi|81242383|gb|ABB63093.1| hydrogenase-2 small subunit [Shigella dysenteriae Sd197]
 gi|308926292|gb|EFP71768.1| twin-arginine translocation pathway signal sequence domain protein
           [Shigella dysenteriae 1617]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|323978928|gb|EGB74008.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|313896777|ref|ZP_07830325.1| putative formate dehydrogenase, beta subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974694|gb|EFR40161.1| putative formate dehydrogenase, beta subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 274

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC  C +  C   CP +      N  + I+ D+CI C  CE  CP    K D 
Sbjct: 76  NCFHCGNPACAAGCPANAIDRNPNGTVVINEDKCIGCHYCEHNCPWHIPKIDE 128


>gi|291544150|emb|CBL17259.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. 18P13]
          Length = 475

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           Y VT  C  C    C +VC           +  I   +C +CG C   CP  AI
Sbjct: 91  YEVTNACRGCLAHRCEDVCRFGAITFDYQHVAHIDKSKCKNCGACAKVCPYTAI 144



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           I C+   C   C +   +  EN  A I  D+CI CG C  +CP  AI
Sbjct: 144 INCRRRPCENACKIKALHMNENKAAAIDNDKCISCGACVYQCPFGAI 190


>gi|218691287|ref|YP_002399499.1| hydrogenase 2 protein HybA [Escherichia coli ED1a]
 gi|218428851|emb|CAR09652.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           ED1a]
          Length = 328

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|168229880|ref|ZP_02654938.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471724|ref|ZP_03077708.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|238911729|ref|ZP_04655566.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194458088|gb|EDX46927.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335482|gb|EDZ22246.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 205

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + +  
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNEA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|78212933|ref|YP_381712.1| ferredoxin [Synechococcus sp. CC9605]
 gi|260436274|ref|ZP_05790244.1| conserved domain protein [Synechococcus sp. WH 8109]
 gi|78197392|gb|ABB35157.1| ferredoxin [Synechococcus sp. CC9605]
 gi|260414148|gb|EEX07444.1| conserved domain protein [Synechococcus sp. WH 8109]
          Length = 74

 Score = 57.1 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C         +G +F  I+ D CIDCG+C   CPV
Sbjct: 1  MAHSIVTDVCEGI--ADCVDACPVACIDQGKGKNKKGTDFYWINFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAIVAEERPDLQK 72


>gi|325957816|ref|YP_004289282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329248|gb|ADZ08310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 368

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ E C  C    C + CPV  F   +   AI+ D+CI C  C   CP + IK +    +
Sbjct: 190 IINEGCNSCG--RCADSCPVSAFEISKAGAAINYDKCIACNNCLGACPDELIKLNWS-TM 246

Query: 64  ELWLKINSEYA 74
           E +++  +EYA
Sbjct: 247 EEFIERMTEYA 257


>gi|314922143|gb|EFS85974.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL001PA1]
 gi|314965227|gb|EFT09326.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL082PA2]
 gi|314982363|gb|EFT26456.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA3]
 gi|315092595|gb|EFT64571.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL110PA4]
 gi|315093987|gb|EFT65963.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL060PA1]
 gi|315104583|gb|EFT76559.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL050PA2]
 gi|327329517|gb|EGE71277.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL103PA1]
          Length = 213

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|298245739|ref|ZP_06969545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553220|gb|EFH87085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 601

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 22/67 (32%)

Query: 9   CILCKHTDCVEVCPVDCFY--------------------EGENFLAIHPDECIDCGVCEP 48
           CILC    CV++CP DC                      EG   + I  ++CI CG+C  
Sbjct: 513 CILCSG--CVDICPYDCISMEGLSRVVKGDPMHQGTSTWEGGADMIIDEEKCIRCGLCVV 570

Query: 49  ECPVDAI 55
            CP DAI
Sbjct: 571 RCPTDAI 577



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPD 58
           I P  CI C  C   CP D I  +
Sbjct: 508 IDPSICILCSGCVDICPYDCISME 531


>gi|226329427|ref|ZP_03804945.1| hypothetical protein PROPEN_03332 [Proteus penneri ATCC 35198]
 gi|225202613|gb|EEG84967.1| hypothetical protein PROPEN_03332 [Proteus penneri ATCC 35198]
          Length = 186

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C  VCP       +++  +  ++CI C  C   CP   ++  + P +     
Sbjct: 63  CHQCEDAPCANVCPNGAIIHNKDYYYVDQEKCIGCKTCVLACPYGTMEVVSRPVMRKSTA 122

Query: 69  IN 70
           +N
Sbjct: 123 LN 124


>gi|212711736|ref|ZP_03319864.1| hypothetical protein PROVALCAL_02811 [Providencia alcalifaciens DSM
           30120]
 gi|212685838|gb|EEB45366.1| hypothetical protein PROVALCAL_02811 [Providencia alcalifaciens DSM
           30120]
          Length = 208

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C    C +VCP    ++ E+ F+ +    CI C  C   CP  A + D
Sbjct: 63  AYYLSISCNHCDDPACAKVCPSGAMHKREDGFVVVDEAVCIGCRYCSMACPYGAPQFD 120


>gi|305665378|ref|YP_003861665.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
 gi|88710133|gb|EAR02365.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Maribacter sp. HTCC2170]
          Length = 373

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C +  CV+VCPV   + E +  + I  D C+ C  C   CP D
Sbjct: 229 CFHCDNPPCVDVCPVQATWREDDGLVVIDYDWCVGCRYCMAACPYD 274


>gi|238783741|ref|ZP_04627760.1| Tetrathionate reductase subunit B [Yersinia bercovieri ATCC 43970]
 gi|238715292|gb|EEQ07285.1| Tetrathionate reductase subunit B [Yersinia bercovieri ATCC 43970]
          Length = 244

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ ++ +  I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|126172840|ref|YP_001048989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125996045|gb|ABN60120.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 260

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C+   C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCEKPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|325498551|gb|EGC96410.1| hydrogenase 2 protein HybA [Escherichia fergusonii ECD227]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|261403278|ref|YP_003247502.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370271|gb|ACX73020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 137

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C    C+  CP +      N + +  ++CI CG+C   CP  AI+ D
Sbjct: 33 CMHCDKNPCLYACPENAIERINNKVVVIEEKCIGCGLCALACPFGAIRID 82


>gi|240102880|ref|YP_002959189.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239910434|gb|ACS33325.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 204

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y V  NC  C++  C+EVCP    ++ E+    +   +CI C +C   CP    + DT
Sbjct: 60  AYNVPMNCRHCENAPCMEVCPTGAIFKDEDGAVLVDTSKCIGCKMCAIVCPFGIPEFDT 118


>gi|15679732|ref|NP_276850.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622871|gb|AAB86210.1| pyruvate oxidoreductase, gamma subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 261

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C   +C+  CP  C         I  D C  CG+C  +CPV AIK + E
Sbjct: 212 DKCIDCD--NCILFCPEGCINREHE---IDYDYCKGCGICAEKCPVKAIKMERE 260



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            +  D+CIDC  C   CP   I  + E  
Sbjct: 208 VLDKDKCIDCDNCILFCPEGCINREHEID 236


>gi|315657349|ref|ZP_07910231.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315491821|gb|EFU81430.1| anaerobic dimethyl sulfoxide reductase subunit B [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 212

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C++  C+EVCP       ++  + +   +C+ C  C+  CP  A + + E
Sbjct: 67  AYYVSISCNHCEYPVCMEVCPTTAMSRRKDGTVYVDESKCVGCRYCQWACPYGAPQLNPE 126

Query: 61  PGL 63
            G 
Sbjct: 127 TGH 129


>gi|310658147|ref|YP_003935868.1| hydrogenase, 4fe-4S ferredoxin-type component [Clostridium
           sticklandii DSM 519]
 gi|308824925|emb|CBH20963.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Clostridium
           sticklandii]
          Length = 185

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK--PDTEPGLE 64
           C  C+   C   CPV+   + +N + +    CI C  C   CP  A++  P+ +   E
Sbjct: 65  CRHCEDAPCANSCPVNAIKKVDNAIVVDEKLCIGCKTCILACPFGALELLPEYKEAQE 122


>gi|307625400|gb|ADN69704.1| hydrogenase 2 protein HybA [Escherichia coli UM146]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|168235580|ref|ZP_02660638.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736681|ref|YP_002114513.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712183|gb|ACF91404.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291183|gb|EDY30536.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|220918377|ref|YP_002493681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956231|gb|ACL66615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 273

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++ V + C  C+ T C++VCPV   Y   +    +  + CI C  C   CP  
Sbjct: 139 SFFVPKMCNHCRETPCIQVCPVGASYRTPDGAVLVDGERCIGCAYCVQACPFG 191


>gi|146739152|gb|ABQ42611.1| HycB [Enterobacter aerogenes]
          Length = 203

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QMCHHCEDAPCAAVCPVNAINRVDGAVQLNESLCVSCKLCAIACPFGAIEF 99


>gi|145592049|ref|YP_001154051.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145283817|gb|ABP51399.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum arsenaticum DSM 13514]
          Length = 604

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C    C  +          +    I P  C+ CG+C   CPVDAIK D
Sbjct: 541 EKCIGCG--ICYNLLKCSAIQARPDRKAYIDPALCVGCGMCAEVCPVDAIKGD 591


>gi|170018745|ref|YP_001723699.1| hydrogenase 2 protein HybA [Escherichia coli ATCC 8739]
 gi|312972740|ref|ZP_07786913.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 1827-70]
 gi|169753673|gb|ACA76372.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|310332682|gb|EFP99895.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 1827-70]
 gi|323941901|gb|EGB38080.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|86157250|ref|YP_464035.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773761|gb|ABC80598.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 310

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C+   C+E CP       E   + I PD C  CG C   CP   +
Sbjct: 127 SDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVV 177


>gi|33595708|ref|NP_883351.1| tetrathionate reductase subunit B [Bordetella parapertussis 12822]
 gi|33565787|emb|CAE36331.1| tetrathionate reductase subunit B [Bordetella parapertussis]
          Length = 257

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 113 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 171


>gi|16760365|ref|NP_455982.1| dimethyl sulfoxide reductase subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141871|ref|NP_805213.1| dimethyl sulfoxide reductase subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420773|ref|ZP_03353839.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213609856|ref|ZP_03369682.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213865404|ref|ZP_03387523.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|25285318|pir||AG0680 probable dimethyl sulphoxide reductase chain STY1567 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502660|emb|CAD01816.1| putative dimethyl sulphoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137499|gb|AAO69062.1| putative dimethyl sulfoxide reductase subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|26249564|ref|NP_755604.1| hydrogenase 2 protein HybA [Escherichia coli CFT073]
 gi|91212410|ref|YP_542396.1| hydrogenase 2 protein HybA [Escherichia coli UTI89]
 gi|117625301|ref|YP_854502.1| hydrogenase 2 protein HybA [Escherichia coli APEC O1]
 gi|191172476|ref|ZP_03034016.1| hydrogenase-2 electron transfer subunit [Escherichia coli F11]
 gi|215488322|ref|YP_002330753.1| hydrogenase 2 protein HybA [Escherichia coli O127:H6 str. E2348/69]
 gi|218550247|ref|YP_002384038.1| hydrogenase 2 protein HybA [Escherichia fergusonii ATCC 35469]
 gi|218560071|ref|YP_002392984.1| hydrogenase 2 protein HybA [Escherichia coli S88]
 gi|218706623|ref|YP_002414142.1| hydrogenase 2 protein HybA [Escherichia coli UMN026]
 gi|293406613|ref|ZP_06650539.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1412]
 gi|293412374|ref|ZP_06655097.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298382352|ref|ZP_06991949.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1302]
 gi|306816661|ref|ZP_07450793.1| hydrogenase 2 protein HybA [Escherichia coli NC101]
 gi|331648787|ref|ZP_08349875.1| hydrogenase-2 operon protein HybA [Escherichia coli M605]
 gi|331659278|ref|ZP_08360220.1| hydrogenase-2 operon protein HybA [Escherichia coli TA206]
 gi|331684642|ref|ZP_08385234.1| hydrogenase-2 operon protein HybA [Escherichia coli H299]
 gi|26109972|gb|AAN82177.1|AE016766_265 Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           CFT073]
 gi|91073984|gb|ABE08865.1| hydrogenase-2 operon protein HybA precursor [Escherichia coli
           UTI89]
 gi|115514425|gb|ABJ02500.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           APEC O1]
 gi|190907144|gb|EDV66743.1| hydrogenase-2 electron transfer subunit [Escherichia coli F11]
 gi|215266394|emb|CAS10831.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218357788|emb|CAQ90432.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ATCC 35469]
 gi|218366840|emb|CAR04610.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           S88]
 gi|218433720|emb|CAR14637.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           UMN026]
 gi|222034719|emb|CAP77461.1| hydrogenase-2 operon protein hybA [Escherichia coli LF82]
 gi|281180037|dbj|BAI56367.1| hydrogenase-2 small subunit [Escherichia coli SE15]
 gi|291426619|gb|EFE99651.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1412]
 gi|291469145|gb|EFF11636.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493161|gb|ADE91917.1| hydrogenase-2 electron transfer subunit [Escherichia coli IHE3034]
 gi|298277492|gb|EFI19008.1| hydrogenase 2 protein HybA [Escherichia coli FVEC1302]
 gi|305850226|gb|EFM50685.1| hydrogenase 2 protein HybA [Escherichia coli NC101]
 gi|312947557|gb|ADR28384.1| hydrogenase 2 protein HybA [Escherichia coli O83:H1 str. NRG 857C]
 gi|323188572|gb|EFZ73857.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli RN587/1]
 gi|323951481|gb|EGB47356.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323966527|gb|EGB61960.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|324114970|gb|EGC08935.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|327251780|gb|EGE63466.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli STEC_7v]
 gi|330909053|gb|EGH37567.1| hydrogenase-2 operon protein hybA precursor [Escherichia coli AA86]
 gi|331042534|gb|EGI14676.1| hydrogenase-2 operon protein HybA [Escherichia coli M605]
 gi|331053860|gb|EGI25889.1| hydrogenase-2 operon protein HybA [Escherichia coli TA206]
 gi|331078257|gb|EGI49463.1| hydrogenase-2 operon protein HybA [Escherichia coli H299]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|238784037|ref|ZP_04628052.1| Electron transport protein hydN [Yersinia bercovieri ATCC 43970]
 gi|238715014|gb|EEQ07011.1| Electron transport protein hydN [Yersinia bercovieri ATCC 43970]
          Length = 158

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 35 CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 80


>gi|167994707|ref|ZP_02575798.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327472|gb|EDZ14236.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|146284007|ref|YP_001174160.1| tetrathionate reductase subunit B [Pseudomonas stutzeri A1501]
 gi|145572212|gb|ABP81318.1| tetrathionate reductase subunit B [Pseudomonas stutzeri A1501]
          Length = 254

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   F   +  + +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 110 CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 168


>gi|56478640|ref|YP_160229.1| molybdenum enzyme, medium subunit,related to phenylacetyl-CoA:
           acceptor oxidoreductase [Aromatoleum aromaticum EbN1]
 gi|56314683|emb|CAI09328.1| Molybdenum enzyme, medium subunit,related to phenylacetyl-CoA:
           acceptor oxidoreductase [Aromatoleum aromaticum EbN1]
          Length = 200

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   CVEVCP    ++ ++ +  I PD+C+ C  C   CP      + +P  
Sbjct: 57  CNHCEDPPCVEVCPTGASFKCDDGIVDIDPDKCVGCRTCMMACPYGNRYFNDKPQH 112


>gi|22299637|ref|NP_682884.1| ferredoxin-like protein [Thermosynechococcus elongatus BP-1]
 gi|22295821|dbj|BAC09646.1| ferredoxin-like protein [Thermosynechococcus elongatus BP-1]
          Length = 75

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT  C      DCVE CPV C + G        ++  I    CIDCG+C   CPV
Sbjct: 1  MAHTIVTNTCEGV--ADCVEACPVACIHPGPGKNAKGTDWFWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + AI P+  P L+
Sbjct: 59 EGAIVPEERPDLQ 71


>gi|163847096|ref|YP_001635140.1| cyclic nucleotide-binding protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524931|ref|YP_002569402.1| cyclic nucleotide-binding protein [Chloroflexus sp. Y-400-fl]
 gi|163668385|gb|ABY34751.1| cyclic nucleotide-binding [Chloroflexus aurantiacus J-10-fl]
 gi|222448810|gb|ACM53076.1| cyclic nucleotide-binding protein [Chloroflexus sp. Y-400-fl]
          Length = 477

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++C  C    +CVEVCP D     +       + C  CG C   CP DA+
Sbjct: 353 VLDHCRQCSVGAECVEVCPEDAIERVDTGALRITNRCTGCGECVSACPYDAV 404


>gi|325299224|ref|YP_004259141.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318777|gb|ADY36668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 260

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TENC  C   +CVEVCP        EN +    + CI C  C   CP  A   D  
Sbjct: 186 VCTENCFGCG--ECVEVCPTHAIRLNAENVIETDINRCIRCCACVKACPNGARVYDNP 241


>gi|320195146|gb|EFW69775.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           WV_060327]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|319901972|ref|YP_004161700.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417003|gb|ADV44114.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
          Length = 486

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP    +  E     I  D CI CG+C   CP  AI  
Sbjct: 116 YEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVY 171



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E  +  I   +CI CG C   CP
Sbjct: 152 DACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCLNACP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAIFE 217


>gi|303248776|ref|ZP_07335028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489863|gb|EFL49792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 376

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV VCP       +    I    CI CG C   CP  A++ D    +  +++
Sbjct: 202 CIGCGQ--CVAVCPAGAATMQDKKAFIEKAICIGCGECLTVCPKKAMRIDWHTEIVPFME 259

Query: 69  INSEYA 74
              EYA
Sbjct: 260 RLVEYA 265



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
             + P +CI CG C   CP  A     +   + +++
Sbjct: 195 FVVEPKKCIGCGQCVAVCPAGAATMQDK---KAFIE 227


>gi|168819257|ref|ZP_02831257.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|198244390|ref|YP_002215640.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207857002|ref|YP_002243653.1| anaerobic dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|197938906|gb|ACH76239.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205343729|gb|EDZ30493.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206708805|emb|CAR33133.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|320086021|emb|CBY95795.1| Formate dehydrogenase-O, iron-sulfur subunit Formate
           dehydrogenase-O subunit beta; FDH-Z subunit beta;
           Aerobic formate dehydrogenase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|326623386|gb|EGE29731.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|148239575|ref|YP_001224962.1| ferredoxin [Synechococcus sp. WH 7803]
 gi|147848114|emb|CAK23665.1| Ferredoxin [Synechococcus sp. WH 7803]
          Length = 74

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C   G+       +F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGV--ADCVDACPVACIQPGKGKNKKGTDFYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          D AI  +    L+ 
Sbjct: 59 DGAILAEERSDLQK 72


>gi|120600302|ref|YP_964876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560395|gb|ABM26322.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 260

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  C+ VCP    F   +  + ++ + C+ CG C   CP DA  I  DT    +
Sbjct: 107 CNHCENPPCIPVCPTGATFQRKDGIVVVNNEWCVGCGYCVQACPYDARFINHDTNTADK 165


>gi|87124438|ref|ZP_01080287.1| ferredoxin [Synechococcus sp. RS9917]
 gi|86168010|gb|EAQ69268.1| ferredoxin [Synechococcus sp. RS9917]
          Length = 74

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C   G         F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTIVTDVCEGI--ADCVDACPVACIQPGRGRNKKGTEFYWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          D AI  +    L+
Sbjct: 59 DGAILAEERADLQ 71


>gi|299532215|ref|ZP_07045609.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
 gi|298719877|gb|EFI60840.1| tetrathionate reductase subunit B [Comamonas testosteroni S44]
          Length = 250

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   F   +  + +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 105 CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 163


>gi|161502316|ref|YP_001569428.1| hypothetical protein SARI_00348 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863663|gb|ABX20286.1| hypothetical protein SARI_00348 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 209

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLND 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|197121285|ref|YP_002133236.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171134|gb|ACG72107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 310

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C+   C+E CP       E   + I PD C  CG C   CP   +
Sbjct: 127 SDVCKHCERAGCLEACPTGAILRTEFGSVYIQPDVCNGCGYCVSACPFGVV 177


>gi|153836556|ref|ZP_01989223.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ3810]
 gi|149750154|gb|EDM60899.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ3810]
          Length = 209

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    +  E + F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|62179489|ref|YP_215906.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62127122|gb|AAX64825.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|16759836|ref|NP_455453.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16764326|ref|NP_459941.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29142391|ref|NP_805733.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56413539|ref|YP_150614.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161614075|ref|YP_001588040.1| hypothetical protein SPAB_01814 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161614804|ref|YP_001588769.1| hypothetical protein SPAB_02556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550363|ref|ZP_02344120.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168230859|ref|ZP_02655917.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168240816|ref|ZP_02665748.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168241021|ref|ZP_02665953.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168260336|ref|ZP_02682309.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168263549|ref|ZP_02685522.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466550|ref|ZP_02700412.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822934|ref|ZP_02834934.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442816|ref|YP_002040164.1| dimethylsulfoxide reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447792|ref|YP_002045535.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194449118|ref|YP_002044958.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470411|ref|ZP_03076395.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197248038|ref|YP_002145883.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197249734|ref|YP_002146546.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197262363|ref|ZP_03162437.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362464|ref|YP_002142101.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198245763|ref|YP_002214889.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390940|ref|ZP_03217551.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927626|ref|ZP_03218827.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204930062|ref|ZP_03221083.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352173|ref|YP_002225974.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856357|ref|YP_002243008.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224582775|ref|YP_002636573.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238913260|ref|ZP_04657097.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|25285315|pir||AC0612 anaerobic dimethyl sulfoxide reductase chain B [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16419477|gb|AAL19900.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16502129|emb|CAD05365.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138021|gb|AAO69582.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127796|gb|AAV77302.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161363439|gb|ABX67207.1| hypothetical protein SPAB_01814 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364168|gb|ABX67936.1| hypothetical protein SPAB_02556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401479|gb|ACF61701.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406096|gb|ACF66315.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194407422|gb|ACF67641.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456775|gb|EDX45614.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631045|gb|EDX49631.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093941|emb|CAR59431.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197211741|gb|ACH49138.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197213437|gb|ACH50834.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197240618|gb|EDY23238.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197940279|gb|ACH77612.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603385|gb|EDZ01931.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204321056|gb|EDZ06257.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322968|gb|EDZ08164.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205271954|emb|CAR36798.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324652|gb|EDZ12491.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205334705|gb|EDZ21469.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339260|gb|EDZ26024.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205339785|gb|EDZ26549.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205340754|gb|EDZ27518.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347817|gb|EDZ34448.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205351194|gb|EDZ37825.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708160|emb|CAR32453.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224467302|gb|ACN45132.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|261246182|emb|CBG23986.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992699|gb|ACY87584.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301157509|emb|CBW16999.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911953|dbj|BAJ35927.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223289|gb|EFX48358.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713958|gb|EFZ05529.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323129231|gb|ADX16661.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|326622642|gb|EGE28987.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627217|gb|EGE33560.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332987857|gb|AEF06840.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|15833135|ref|NP_311908.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. Sakai]
 gi|16130896|ref|NP_417470.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114304|ref|NP_708814.1| hydrogenase 2 protein HybA [Shigella flexneri 2a str. 301]
 gi|30064351|ref|NP_838522.1| hydrogenase 2 protein HybA [Shigella flexneri 2a str. 2457T]
 gi|74313541|ref|YP_311960.1| hydrogenase 2 protein HybA [Shigella sonnei Ss046]
 gi|82545266|ref|YP_409213.1| hydrogenase 2 protein HybA [Shigella boydii Sb227]
 gi|89109771|ref|AP_003551.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. W3110]
 gi|110643236|ref|YP_670966.1| hydrogenase 2 protein HybA [Escherichia coli 536]
 gi|110806899|ref|YP_690419.1| hydrogenase 2 protein HybA [Shigella flexneri 5 str. 8401]
 gi|157159045|ref|YP_001464462.1| hydrogenase 2 protein HybA [Escherichia coli E24377A]
 gi|168747499|ref|ZP_02772521.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168753960|ref|ZP_02778967.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168760151|ref|ZP_02785158.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767014|ref|ZP_02792021.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168773352|ref|ZP_02798359.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168781867|ref|ZP_02806874.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168785865|ref|ZP_02810872.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168797583|ref|ZP_02822590.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170082544|ref|YP_001731864.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170679790|ref|YP_001745262.1| hydrogenase 2 protein HybA [Escherichia coli SMS-3-5]
 gi|170765746|ref|ZP_02900557.1| hydrogenase-2 electron transfer subunit [Escherichia albertii
           TW07627]
 gi|188496245|ref|ZP_03003515.1| hydrogenase-2 electron transfer subunit [Escherichia coli 53638]
 gi|191167535|ref|ZP_03029347.1| hydrogenase-2 electron transfer subunit [Escherichia coli B7A]
 gi|193062093|ref|ZP_03043189.1| hydrogenase-2 electron transfer subunit [Escherichia coli E22]
 gi|193067473|ref|ZP_03048441.1| hydrogenase-2 electron transfer subunit [Escherichia coli E110019]
 gi|194426277|ref|ZP_03058832.1| hydrogenase-2 electron transfer subunit [Escherichia coli B171]
 gi|194436749|ref|ZP_03068849.1| hydrogenase-2 electron transfer subunit [Escherichia coli 101-1]
 gi|195937142|ref|ZP_03082524.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. EC4024]
 gi|208805976|ref|ZP_03248313.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208813410|ref|ZP_03254739.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821438|ref|ZP_03261758.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209398622|ref|YP_002272475.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209920472|ref|YP_002294556.1| hydrogenase 2 protein HybA [Escherichia coli SE11]
 gi|217326959|ref|ZP_03443042.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218555570|ref|YP_002388483.1| hydrogenase 2 protein HybA [Escherichia coli IAI1]
 gi|218696706|ref|YP_002404373.1| hydrogenase 2 protein HybA [Escherichia coli 55989]
 gi|218701770|ref|YP_002409399.1| hydrogenase 2 protein HybA [Escherichia coli IAI39]
 gi|238902114|ref|YP_002927910.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           BW2952]
 gi|253772165|ref|YP_003034996.1| hydrogenase 2 protein HybA [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038165|ref|ZP_04872223.1| hydrogenase-2 electron transfer subunit [Escherichia sp. 1_1_43]
 gi|254162950|ref|YP_003046058.1| hydrogenase 2 protein HybA [Escherichia coli B str. REL606]
 gi|254794953|ref|YP_003079790.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. TW14359]
 gi|256019080|ref|ZP_05432945.1| hydrogenase 2 protein HybA [Shigella sp. D9]
 gi|256024418|ref|ZP_05438283.1| hydrogenase 2 protein HybA [Escherichia sp. 4_1_40B]
 gi|260845757|ref|YP_003223535.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O103:H2 str. 12009]
 gi|260857136|ref|YP_003231027.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O26:H11 str. 11368]
 gi|260869757|ref|YP_003236159.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O111:H- str. 11128]
 gi|261228012|ref|ZP_05942293.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254869|ref|ZP_05947402.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284379|ref|YP_003501197.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|293416441|ref|ZP_06659080.1| hydrogenase-2 operon protein hybA [Escherichia coli B185]
 gi|293449345|ref|ZP_06663766.1| hydrogenase-2 operon protein hybA [Escherichia coli B088]
 gi|297517180|ref|ZP_06935566.1| hydrogenase 2 protein HybA [Escherichia coli OP50]
 gi|301019948|ref|ZP_07184083.1| Tat pathway signal sequence [Escherichia coli MS 196-1]
 gi|307139686|ref|ZP_07499042.1| hydrogenase 2 protein HybA [Escherichia coli H736]
 gi|307310369|ref|ZP_07590017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331643698|ref|ZP_08344829.1| hydrogenase-2 operon protein HybA [Escherichia coli H736]
 gi|331654607|ref|ZP_08355607.1| hydrogenase-2 operon protein HybA [Escherichia coli M718]
 gi|331669980|ref|ZP_08370825.1| hydrogenase-2 operon protein HybA [Escherichia coli TA271]
 gi|331679072|ref|ZP_08379744.1| hydrogenase-2 operon protein HybA [Escherichia coli H591]
 gi|332280183|ref|ZP_08392596.1| hydrogenase-2 small subunit [Shigella sp. D9]
 gi|77417733|sp|P0AAJ9|HYBA_ECO57 RecName: Full=Hydrogenase-2 operon protein hybA; Flags: Precursor
 gi|77417734|sp|P0AAJ8|HYBA_ECOLI RecName: Full=Hydrogenase-2 operon protein hybA; Flags: Precursor
 gi|77417735|sp|P0AAK0|HYBA_SHIFL RecName: Full=Hydrogenase-2 operon protein hybA; Flags: Precursor
 gi|544483|gb|AAA21589.1| putative hydrogenase-2 small subunit [Escherichia coli]
 gi|882525|gb|AAA69163.1| hydrogenase-2 small subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789370|gb|AAC76032.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13363353|dbj|BAB37304.1| hydrogenase-2 small subunit [Escherichia coli O157:H7 str. Sakai]
 gi|24053461|gb|AAN44521.1| hydrogenase-2 small subunit [Shigella flexneri 2a str. 301]
 gi|30042608|gb|AAP18332.1| hydrogenase-2 small subunit [Shigella flexneri 2a str. 2457T]
 gi|73857018|gb|AAZ89725.1| hydrogenase-2 small subunit [Shigella sonnei Ss046]
 gi|81246677|gb|ABB67385.1| hydrogenase-2 small subunit [Shigella boydii Sb227]
 gi|85675804|dbj|BAE77057.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K12 substr. W3110]
 gi|110344828|gb|ABG71065.1| hydrogenase-2 operon protein HybA precursor [Escherichia coli 536]
 gi|110616447|gb|ABF05114.1| hydrogenase-2 small subunit [Shigella flexneri 5 str. 8401]
 gi|157081075|gb|ABV20783.1| hydrogenase-2 electron transfer subunit [Escherichia coli E24377A]
 gi|169890379|gb|ACB04086.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170124892|gb|EDS93823.1| hydrogenase-2 electron transfer subunit [Escherichia albertii
           TW07627]
 gi|170517508|gb|ACB15686.1| hydrogenase-2 electron transfer subunit [Escherichia coli SMS-3-5]
 gi|187770783|gb|EDU34627.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017775|gb|EDU55897.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188491444|gb|EDU66547.1| hydrogenase-2 electron transfer subunit [Escherichia coli 53638]
 gi|189000639|gb|EDU69625.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189358464|gb|EDU76883.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189363781|gb|EDU82200.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189369254|gb|EDU87670.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189374019|gb|EDU92435.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189379701|gb|EDU98117.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190902392|gb|EDV62129.1| hydrogenase-2 electron transfer subunit [Escherichia coli B7A]
 gi|192932313|gb|EDV84911.1| hydrogenase-2 electron transfer subunit [Escherichia coli E22]
 gi|192959430|gb|EDV89865.1| hydrogenase-2 electron transfer subunit [Escherichia coli E110019]
 gi|194415585|gb|EDX31852.1| hydrogenase-2 electron transfer subunit [Escherichia coli B171]
 gi|194424231|gb|EDX40218.1| hydrogenase-2 electron transfer subunit [Escherichia coli 101-1]
 gi|208725777|gb|EDZ75378.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208734687|gb|EDZ83374.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208741561|gb|EDZ89243.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160022|gb|ACI37455.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209759808|gb|ACI78216.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759810|gb|ACI78217.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759812|gb|ACI78218.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759814|gb|ACI78219.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209759816|gb|ACI78220.1| hydrogenase-2 small subunit [Escherichia coli]
 gi|209913731|dbj|BAG78805.1| hydrogenase-2 small subunit [Escherichia coli SE11]
 gi|217319326|gb|EEC27751.1| hydrogenase-2 electron transfer subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218353438|emb|CAU99515.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           55989]
 gi|218362338|emb|CAQ99960.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           IAI1]
 gi|218371756|emb|CAR19609.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           IAI39]
 gi|226839789|gb|EEH71810.1| hydrogenase-2 electron transfer subunit [Escherichia sp. 1_1_43]
 gi|238861449|gb|ACR63447.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           BW2952]
 gi|242378552|emb|CAQ33338.1| hydrogenase 2 4Fe-4S ferredoxin-type component, subunit of
           hydrogenase 2 [Escherichia coli BL21(DE3)]
 gi|253323209|gb|ACT27811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974851|gb|ACT40522.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli B
           str. REL606]
 gi|253979006|gb|ACT44676.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           BL21(DE3)]
 gi|254594353|gb|ACT73714.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755785|dbj|BAI27287.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O26:H11 str. 11368]
 gi|257760904|dbj|BAI32401.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O103:H2 str. 12009]
 gi|257766113|dbj|BAI37608.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli
           O111:H- str. 11128]
 gi|260447962|gb|ACX38384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|281602387|gb|ADA75371.1| Hydrogenase-2 operon protein hybA precursor [Shigella flexneri
           2002017]
 gi|284923023|emb|CBG36115.1| hydrogenase-2 subunit [Escherichia coli 042]
 gi|290764252|gb|ADD58213.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322435|gb|EFE61864.1| hydrogenase-2 operon protein hybA [Escherichia coli B088]
 gi|291431797|gb|EFF04780.1| hydrogenase-2 operon protein hybA [Escherichia coli B185]
 gi|299882046|gb|EFI90257.1| Tat pathway signal sequence [Escherichia coli MS 196-1]
 gi|306909264|gb|EFN39759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309703432|emb|CBJ02771.1| hydrogenase-2 subunit [Escherichia coli ETEC H10407]
 gi|313648114|gb|EFS12560.1| twin-arginine translocation pathway signal sequence domain protein
           [Shigella flexneri 2a str. 2457T]
 gi|315062315|gb|ADT76642.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Escherichia coli W]
 gi|315137593|dbj|BAJ44752.1| hydrogenase-2 operon protein hybA precursor [Escherichia coli DH1]
 gi|315614999|gb|EFU95637.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli 3431]
 gi|320184207|gb|EFW59023.1| Hydrogenase-2 operon protein hybA precursor [Shigella flexneri CDC
           796-83]
 gi|320189352|gb|EFW64011.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O157:H7 str. EC1212]
 gi|320201912|gb|EFW76487.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           EC4100B]
 gi|320640073|gb|EFX09645.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. G5101]
 gi|320645371|gb|EFX14380.1| hydrogenase 2 protein HybA [Escherichia coli O157:H- str. 493-89]
 gi|320650684|gb|EFX19141.1| hydrogenase 2 protein HybA [Escherichia coli O157:H- str. H 2687]
 gi|320656378|gb|EFX24285.1| hydrogenase 2 protein HybA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661751|gb|EFX29159.1| hydrogenase 2 protein HybA [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666902|gb|EFX33878.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 str. LSU-61]
 gi|323154695|gb|EFZ40894.1| twin-arginine translocation pathway signal sequence domain protein
           [Escherichia coli EPECa14]
 gi|323163052|gb|EFZ48885.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli E128010]
 gi|323168158|gb|EFZ53845.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella sonnei 53G]
 gi|323173759|gb|EFZ59388.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli LT-68]
 gi|323178706|gb|EFZ64282.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli 1180]
 gi|323183587|gb|EFZ68984.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli 1357]
 gi|323377100|gb|ADX49368.1| hydrogenase 2 protein HybA [Escherichia coli KO11]
 gi|323935999|gb|EGB32294.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323946755|gb|EGB42775.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|323960953|gb|EGB56572.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|324119612|gb|EGC13493.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326337706|gb|EGD61540.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O157:H7 str. 1125]
 gi|326347270|gb|EGD70995.1| Hydrogenase-2 operon protein hybA precursor [Escherichia coli
           O157:H7 str. 1044]
 gi|331037169|gb|EGI09393.1| hydrogenase-2 operon protein HybA [Escherichia coli H736]
 gi|331047989|gb|EGI20066.1| hydrogenase-2 operon protein HybA [Escherichia coli M718]
 gi|331062893|gb|EGI34807.1| hydrogenase-2 operon protein HybA [Escherichia coli TA271]
 gi|331073137|gb|EGI44460.1| hydrogenase-2 operon protein HybA [Escherichia coli H591]
 gi|332091947|gb|EGI97025.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella boydii 3594-74]
 gi|332102535|gb|EGJ05881.1| hydrogenase-2 small subunit [Shigella sp. D9]
 gi|332344955|gb|AEE58289.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Escherichia coli UMNK88]
 gi|332752673|gb|EGJ83058.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-671]
 gi|332753058|gb|EGJ83442.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri 4343-70]
 gi|332754735|gb|EGJ85101.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri 2747-71]
 gi|332765479|gb|EGJ95697.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri 2930-71]
 gi|332998941|gb|EGK18532.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri VA-6]
 gi|332999751|gb|EGK19335.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-272]
 gi|333000188|gb|EGK19771.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-218]
 gi|333014772|gb|EGK34117.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella flexneri K-304]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|325299905|ref|YP_004259822.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319458|gb|ADY37349.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 297

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P +C  C  CE ECP  AI
Sbjct: 218 TAACIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCETECPQGAI 265



 Score = 41.7 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C               +  ++C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVSACQFGAIRMNPETGLPEVDEEKCTACGACAKACPRNIIE 189


>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
 gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
          Length = 596

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           ++  E C  C  T C  VCPV     G     I  P  CI CG C  +C   AI 
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIY 594



 Score = 41.3 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I+P++C  C +C   CPV AI
Sbjct: 540 QYFINPEKCKGCTLCARVCPVHAI 563


>gi|261248279|emb|CBG26116.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|237729926|ref|ZP_04560407.1| hydrogenase-2 small subunit [Citrobacter sp. 30_2]
 gi|226908532|gb|EEH94450.1| hydrogenase-2 small subunit [Citrobacter sp. 30_2]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|153831858|ref|ZP_01984525.1| dimethylsulfoxide reductase, chain B [Vibrio harveyi HY01]
 gi|260902011|ref|ZP_05910406.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ4037]
 gi|269963677|ref|ZP_06177999.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|148871856|gb|EDL70679.1| dimethylsulfoxide reductase, chain B [Vibrio harveyi HY01]
 gi|269831589|gb|EEZ85726.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|308107733|gb|EFO45273.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AQ4037]
 gi|328473766|gb|EGF44601.1| anaerobic dimethyl sulfoxide reductase subunit B [Vibrio
           parahaemolyticus 10329]
          Length = 209

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    +  E + F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|126732222|ref|ZP_01748023.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126707304|gb|EBA06369.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 249

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    F   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASFKRTEDGIVLVNESDCIGCGLCAWACPYGARELDAAEG 137


>gi|124028465|ref|YP_001013785.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
 gi|123979159|gb|ABM81440.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
          Length = 651

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YV  E C  C        CP        +    + P  C  CGVC   CP  A KP ++P
Sbjct: 580 YVDEEKCTACGICYTAFNCP--AIRRRPDGKAMVDPALCTGCGVCAQVCPFGAFKP-SQP 636

Query: 62  GLELWLKI 69
             E WLKI
Sbjct: 637 PSEEWLKI 644


>gi|33600231|ref|NP_887791.1| tetrathionate reductase subunit B [Bordetella bronchiseptica RB50]
 gi|33567829|emb|CAE31743.1| tetrathionate reductase subunit B [Bordetella bronchiseptica RB50]
          Length = 257

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 113 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 171


>gi|320180972|gb|EFW55893.1| Hydrogenase-2 operon protein hybA precursor [Shigella boydii ATCC
           9905]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|315180297|gb|ADT87211.1| hydrogenase 4 Fe-S subunit [Vibrio furnissii NCTC 11218]
          Length = 201

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   C  VCPV    + E+ + +    CI C +C   CP  AI  D
Sbjct: 51  CRHCEDAPCATVCPVHAIKKEEDRILLQETLCIGCTLCAVACPFGAIALD 100


>gi|227496205|ref|ZP_03926509.1| formate dehydrogenase beta subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226834258|gb|EEH66641.1| formate dehydrogenase beta subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 348

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 152 SDVCKHCTHAGCLDVCPTGALFRSEFGSVVVQADVCNGCGYCVAACPFGVI 202



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 23/81 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--------GENFLAI----HPDECIDC-------- 43
           V  + C  C +  CV  CP              G +   I    +  +C  C        
Sbjct: 182 VQADVCNGCGY--CVAACPFGVIDRREKGTITIGGHSEEISNGGNAQKCTLCYDRLKAGK 239

Query: 44  -GVCEPECPVDAIKPDTEPGL 63
              C   CP ++I+      +
Sbjct: 240 RPACATNCPTESIQFGDHDEM 260


>gi|224584945|ref|YP_002638744.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469473|gb|ACN47303.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|156934092|ref|YP_001438008.1| hypothetical protein ESA_01918 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532346|gb|ABU77172.1| hypothetical protein ESA_01918 [Cronobacter sakazakii ATCC BAA-894]
          Length = 209

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C   CP    +  +G+  + ++ D+C+ CG C   CP  A + +T
Sbjct: 71  AYTLSISCNHCADPICTRNCPTTAMHKRDGDGIVRVNTDKCVGCGYCAWSCPYGAPQRNT 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|16761927|ref|NP_457544.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766449|ref|NP_462064.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143414|ref|NP_806756.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415090|ref|YP_152165.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181660|ref|YP_218077.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616129|ref|YP_001590094.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167990309|ref|ZP_02571409.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231741|ref|ZP_02656799.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238101|ref|ZP_02663159.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242968|ref|ZP_02667900.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262900|ref|ZP_02684873.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463650|ref|ZP_02697567.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819796|ref|ZP_02831796.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446005|ref|YP_002042413.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194447754|ref|YP_002047144.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472018|ref|ZP_03078002.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736578|ref|YP_002116104.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248550|ref|YP_002148070.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197265085|ref|ZP_03165159.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364019|ref|YP_002143656.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245843|ref|YP_002217126.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387105|ref|ZP_03213717.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928261|ref|ZP_03219461.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858408|ref|YP_002245059.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213161307|ref|ZP_03347017.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417308|ref|ZP_03350452.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213586280|ref|ZP_03368106.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213618584|ref|ZP_03372410.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648646|ref|ZP_03378699.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|238909949|ref|ZP_04653786.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825343|ref|ZP_06544587.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25387630|pir||AE0885 hydrogenase-2 small chain [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421703|gb|AAL22023.1| unknown [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16504229|emb|CAD02981.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139048|gb|AAO70616.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129347|gb|AAV78853.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129293|gb|AAX66996.1| function unknown, intitally thought to be hydrogenase-2 small
           subunit which now identified as hybO [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365493|gb|ABX69261.1| hypothetical protein SPAB_03931 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404668|gb|ACF64890.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406058|gb|ACF66277.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458382|gb|EDX47221.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712080|gb|ACF91301.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633630|gb|EDX52044.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095496|emb|CAR61060.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212253|gb|ACH49650.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243340|gb|EDY25960.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289016|gb|EDY28387.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940359|gb|ACH77692.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604203|gb|EDZ02748.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322583|gb|EDZ07780.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205331109|gb|EDZ17873.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333855|gb|EDZ20619.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337793|gb|EDZ24557.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343282|gb|EDZ30046.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348510|gb|EDZ35141.1| hydrogenase-2 electron transfer subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710211|emb|CAR34568.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|267995331|gb|ACY90216.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159703|emb|CBW19222.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914173|dbj|BAJ38147.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087598|emb|CBY97362.1| Hydrogenase-2 operon protein hybA Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225826|gb|EFX50880.1| Hydrogenase-2 operon protein hybA precursor [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613551|gb|EFY10492.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621143|gb|EFY18001.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624206|gb|EFY21040.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628055|gb|EFY24844.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633174|gb|EFY29916.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636249|gb|EFY32957.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639586|gb|EFY36274.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647482|gb|EFY43971.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648665|gb|EFY45112.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653719|gb|EFY50045.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657826|gb|EFY54094.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663928|gb|EFY60127.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669060|gb|EFY65211.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672945|gb|EFY69052.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678063|gb|EFY74126.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681240|gb|EFY77273.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687830|gb|EFY83797.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716144|gb|EFZ07715.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131506|gb|ADX18936.1| hydrogenase-2 subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195641|gb|EFZ80818.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199677|gb|EFZ84767.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202575|gb|EFZ87615.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207937|gb|EFZ92883.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212510|gb|EFZ97327.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215007|gb|EFZ99755.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222737|gb|EGA07102.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224181|gb|EGA08474.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230506|gb|EGA14624.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235143|gb|EGA19229.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239183|gb|EGA23233.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244460|gb|EGA28466.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247075|gb|EGA31041.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253443|gb|EGA37272.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256251|gb|EGA39987.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262574|gb|EGA46130.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267331|gb|EGA50815.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269266|gb|EGA52721.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624899|gb|EGE31244.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332990014|gb|AEF08997.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|15803541|ref|NP_289574.1| hydrogenase 2 protein HybA [Escherichia coli O157:H7 EDL933]
 gi|25387625|pir||A85959 hydrogenase-2 small subunit [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517560|gb|AAG58133.1|AE005529_11 hydrogenase-2 small subunit [Escherichia coli O157:H7 str. EDL933]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|187732487|ref|YP_001881759.1| hydrogenase 2 protein HybA [Shigella boydii CDC 3083-94]
 gi|187429479|gb|ACD08753.1| hydrogenase-2 electron transfer subunit [Shigella boydii CDC
           3083-94]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|157162476|ref|YP_001459794.1| hydrogenase 2 protein HybA [Escherichia coli HS]
 gi|157068156|gb|ABV07411.1| hydrogenase-2 electron transfer subunit [Escherichia coli HS]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|302344389|ref|YP_003808918.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301641002|gb|ADK86324.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 356

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             V  + C  C+   C++ C +     G++ LA I  D CI CG+C   CP +A+    +
Sbjct: 273 AVVDKDACTGCE--TCLDRCQMKAIVMGDDGLARIDLDRCIGCGLCVTTCPTEALTLQAK 330

Query: 61  PGLEL 65
           P  +L
Sbjct: 331 PSAQL 335


>gi|205351901|ref|YP_002225702.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207856078|ref|YP_002242729.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|205271682|emb|CAR36512.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707881|emb|CAR32169.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626939|gb|EGE33282.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 185

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|304314084|ref|YP_003849231.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302587543|gb|ADL57918.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 162

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C  C+   C  VCP D   +      + P+ CI CG+C   CP  A+  +     +
Sbjct: 44 CQQCEDAPCRTVCPTDAIQD-----EVDPERCIGCGLCMLVCPFGAVVMEDRKAQK 94


>gi|282853588|ref|ZP_06262925.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J139]
 gi|282583041|gb|EFB88421.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes J139]
          Length = 213

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++VCP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|269216722|ref|ZP_06160576.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
 gi|269129867|gb|EEZ60950.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
          Length = 177

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           VV   C+ C+   C +VCP    Y  ++ +  + P+ CI C  C   CP  
Sbjct: 53  VVPSQCMHCEDAPCQKVCPTHATYTTDDGVVLVDPERCIGCKYCMAACPYG 103


>gi|188586890|ref|YP_001918435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351577|gb|ACB85847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 333

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 4  VVTENCILCK----HTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ E CI  K      D C   CP +     +  + + P++C  CG+C   CP  AIKP+
Sbjct: 19 VIQERCISYKMRLMDCDKCSRKCPQNAIKVRKGKVLLSPEDCSGCGICAGACPTHAIKPE 78

Query: 59 TEPGLELWLKI 69
                 + +I
Sbjct: 79 NLNYHTKFKEI 89


>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
 gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
          Length = 622

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C  T C   CPV     E +    I   +CI CG C   C  DAI  +
Sbjct: 572 DKCKGC--TKCARNCPVGAITGEKKEAHVIDTTKCIKCGACMEGCKFDAIYAE 622



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I PD+C  C  C   CPV AI  + +   
Sbjct: 569 IDPDKCKGCTKCARNCPVGAITGEKKEAH 597


>gi|161506280|ref|YP_001573392.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867627|gb|ABX24250.1| hypothetical protein SARI_04476 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 328

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|322613255|gb|EFY10198.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322621325|gb|EFY18182.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623744|gb|EFY20582.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322629016|gb|EFY25795.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631738|gb|EFY28492.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637526|gb|EFY34228.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641866|gb|EFY38496.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322646711|gb|EFY43217.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322651411|gb|EFY47791.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653138|gb|EFY49472.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322658858|gb|EFY55113.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322664872|gb|EFY61065.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322668874|gb|EFY65026.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322670620|gb|EFY66753.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322675361|gb|EFY71437.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322682168|gb|EFY78193.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322685001|gb|EFY80998.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193939|gb|EFZ79141.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197969|gb|EFZ83091.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201984|gb|EFZ87044.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323207117|gb|EFZ92070.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211672|gb|EFZ96506.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323214356|gb|EFZ99107.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323221507|gb|EGA05921.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225551|gb|EGA09781.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323231109|gb|EGA15225.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323234059|gb|EGA18148.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238246|gb|EGA22304.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242520|gb|EGA26544.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248503|gb|EGA32437.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251281|gb|EGA35153.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323259209|gb|EGA42852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323261520|gb|EGA45099.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264799|gb|EGA48300.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272364|gb|EGA55771.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 185

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
 gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
          Length = 596

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           ++  E C  C  T C  VCPV     G     I  P  CI CG C  +C   AI 
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIY 594



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I+P++C  C +C   CPV AI
Sbjct: 540 QYFINPEKCKGCTLCARVCPVHAI 563


>gi|212223691|ref|YP_002306927.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
 gi|212008648|gb|ACJ16030.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
          Length = 168

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C+   C++VCP    Y   +  + I+PD+CI C +C   CP      D +
Sbjct: 47  NCRHCERAPCMDVCPAGAIYRDSDGAIIINPDKCIGCYMCLAVCPFGVPSFDVK 100


>gi|205352798|ref|YP_002226599.1| anaerobic dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272579|emb|CAR37483.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627867|gb|EGE34210.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|170290696|ref|YP_001737512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174776|gb|ACB07829.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
          Korarchaeum cryptofilum OPF8]
          Length = 116

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
          C  C    C++VCP       E    I     CI CG C   CP  AI  D
Sbjct: 38 CRACSDPSCMKVCPTSALRSREGGGVILDSRLCIGCGYCVKACPFGAIFWD 88



 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C +  CV+ CP    +   + +   P  C  CG+C   CP   IK
Sbjct: 70  CIGCGY--CVKACPFGAIF--WDCVNDKPVICTHCGLCVDFCPYGVIK 113


>gi|161503909|ref|YP_001571021.1| hypothetical protein SARI_01999 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865256|gb|ABX21879.1| hypothetical protein SARI_01999 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           ++  E C  C  T C  VCPV     G     I  P  CI CG C  +C   AI 
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIY 594



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I+P++C  C +C   CPV AI
Sbjct: 540 QYFINPEKCKGCTLCARVCPVHAI 563


>gi|147677591|ref|YP_001211806.1| ferredoxin [Pelotomaculum thermopropionicum SI]
 gi|146273688|dbj|BAF59437.1| ferredoxin [Pelotomaculum thermopropionicum SI]
          Length = 58

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y +++ C+ C    C+E CP D   EG +   I PD+C +CG C   CP  AI  +
Sbjct: 5  AYKISDECLACG--SCMEACPNDAISEG-DIYKIDPDKCAECGACVDACPTGAIIEE 58


>gi|16764842|ref|NP_460457.1| dimethyl sulphoxide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167994479|ref|ZP_02575570.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168463083|ref|ZP_02697014.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197263256|ref|ZP_03163330.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420017|gb|AAL20416.1| putative dimethyl sulphoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195634592|gb|EDX52944.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197241511|gb|EDY24131.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205327659|gb|EDZ14423.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246698|emb|CBG24508.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993396|gb|ACY88281.1| putative dimethyl sulphoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158027|emb|CBW17522.1| putative anaerobic dimethyl sulfoxide reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312912480|dbj|BAJ36454.1| putative dimethylsulfoxide reductase B subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224115|gb|EFX49178.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322616115|gb|EFY13031.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620564|gb|EFY17426.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622965|gb|EFY19807.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322638773|gb|EFY35468.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322646573|gb|EFY43081.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649061|gb|EFY45502.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654577|gb|EFY50898.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322665179|gb|EFY61367.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667923|gb|EFY64083.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671665|gb|EFY67786.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677288|gb|EFY73352.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680048|gb|EFY76087.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|323129766|gb|ADX17196.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323200039|gb|EFZ85127.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205664|gb|EFZ90627.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323223624|gb|EGA07937.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232209|gb|EGA16315.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234380|gb|EGA18467.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237831|gb|EGA21890.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323255983|gb|EGA39723.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323266687|gb|EGA50174.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|332988379|gb|AEF07362.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|325576997|ref|ZP_08147568.1| hydrogenase-2 operon protein HybA [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160955|gb|EGC73074.1| hydrogenase-2 operon protein HybA [Haemophilus parainfluenzae ATCC
           33392]
          Length = 345

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV  + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D 
Sbjct: 104 AYVKKQ-CMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDY 162

Query: 60  E 60
           +
Sbjct: 163 D 163


>gi|313886419|ref|ZP_07820139.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924135|gb|EFR34924.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 492

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y V+  C  C    C   CP  C    +N    I  + CI CG C   CP  AI  
Sbjct: 108 YEVSNLCRGCVSRACSSNCPKSCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVY 163



 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           E CI C                  C E CPV    + E+ +  I   +CI CG C   CP
Sbjct: 144 EICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCLNACP 203

Query: 52  VDAIKP 57
             AI  
Sbjct: 204 FGAIFE 209


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           +T++C+ C  T C + CP D          +I  ++C+ CG+C  EC  DAI+
Sbjct: 724 ITDDCVGC--TKCSKACPSDAIPYTPYEKHSIDIEKCVLCGLCIDECSFDAIR 774


>gi|300088669|ref|YP_003759191.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528402|gb|ADJ26870.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 516

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C    CV VC      +  + + I  + C  CG C   CP DA
Sbjct: 392 ADACTNCGL--CVPVCKRRAITQAGDNIVIDRESCRQCGQCVAVCPFDA 438



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 10/44 (22%)

Query: 21  CPVDC---------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP  C         FY   +F   + D C +CG+C P C   AI
Sbjct: 368 CPNSCGVSHLADLGFYGTMDFDY-NADACTNCGLCVPVCKRRAI 410


>gi|260913866|ref|ZP_05920340.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
 gi|260631953|gb|EEX50130.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
          Length = 197

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  E CI C  T C++ CPVD        +  I PD C  C +C P CP D I
Sbjct: 107 AFIDEEMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCI 159


>gi|258406380|ref|YP_003199122.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257798607|gb|ACV69544.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 807

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI C    C  VCP       E  +   P  C  CG+C   CP  A
Sbjct: 598 ETCIQC--RMCETVCPHGAIRLTEEGMVADPAFCQACGLCAAACPTHA 643



 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 20/75 (26%)

Query: 8   NCILCKHTDCVEVCPV------------------DCFYEGENFLAIHPDECIDCGVCEPE 49
            C+ C    C  VCP                   D      +   I  D C  CG CE  
Sbjct: 251 ACVACG--ACSAVCPEFGHSGFNEGLFARKAIDKDAPRAVPDAYTILDDVCTRCGACEEV 308

Query: 50  CPVDAIKPDTEPGLE 64
           CP  AI    EP   
Sbjct: 309 CPAGAIDLKAEPEER 323



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 35  IHPDECIDCGVCEPECP 51
           + P  C+ CG C   CP
Sbjct: 247 VDPAACVACGACSAVCP 263



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
            ++ + CI C +CE  CP  AI+
Sbjct: 594 HLNRETCIQCRMCETVCPHGAIR 616


>gi|160888148|ref|ZP_02069151.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|317478948|ref|ZP_07938095.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156862283|gb|EDO55714.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|316904925|gb|EFV26732.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 486

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP    +  E     I  D CI CG+C   CP  AI  
Sbjct: 116 YEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDACISCGICHKSCPYHAIVY 171



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E  +  I   +CI CG C   CP
Sbjct: 152 DACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCLNACP 211

Query: 52  VDAIKP 57
             AI  
Sbjct: 212 FGAIFE 217


>gi|74316589|ref|YP_314329.1| DMSO reductase subunit B [Thiobacillus denitrificans ATCC 25259]
 gi|74056084|gb|AAZ96524.1| DMSO reductase chain B [Thiobacillus denitrificans ATCC 25259]
          Length = 231

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+  DCV VCP    +   E+ +  I  D+C+ C  C   CP  A + D
Sbjct: 71  SCMHCEDADCVTVCPTGASYKRAEDGIVLIDQDKCMGCNYCSWACPYGARELD 123


>gi|284988958|ref|YP_003407512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284062203|gb|ADB73141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 355

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I+ 
Sbjct: 174 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQGDICNGCGYCVPSCPYGVIEQ 226


>gi|28898222|ref|NP_797827.1| anaerobic dimethyl sulfoxide reductase subunit B [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260361744|ref|ZP_05774771.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           K5030]
 gi|260878563|ref|ZP_05890918.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AN-5034]
 gi|260898976|ref|ZP_05907417.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           Peru-466]
 gi|28806439|dbj|BAC59711.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308087958|gb|EFO37653.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           Peru-466]
 gi|308091188|gb|EFO40883.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           AN-5034]
 gi|308113620|gb|EFO51160.1| dimethylsulfoxide reductase, chain B [Vibrio parahaemolyticus
           K5030]
          Length = 209

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    +  E + F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCTNPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|167550056|ref|ZP_02343814.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168236875|ref|ZP_02661933.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737930|ref|YP_002114017.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|200389576|ref|ZP_03216187.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|194713432|gb|ACF92653.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290223|gb|EDY29580.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199602021|gb|EDZ00567.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205325023|gb|EDZ12862.1| anaerobic dimethyl sulfoxide reductase, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 205

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|70732171|ref|YP_261927.1| RnfABCDGE type electron transport complex subunit B [Pseudomonas
           fluorescens Pf-5]
 gi|68346470|gb|AAY94076.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 401

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 74  AHIREAECIGC--TKCIQACPVDAIVGAAKLMHSVLIDECTGCDLCVAPCPVDCI 126


>gi|307297327|ref|ZP_07577133.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916587|gb|EFN46969.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 291

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++++CI C    C + C  D    G  +    P  C  CG+C   CP DAI        +
Sbjct: 63  ISDSCISCG--ICEKYCRFDAVIRGGPYSV-DPYACEGCGMCVAVCPADAITLKDNKSGD 119

Query: 65  LWL 67
            +L
Sbjct: 120 YFL 122


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score = 57.1 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C + CPV+C  +G+      I  D C+ CG C  +CP DAI
Sbjct: 544 DKCKKCGL--CAKNCPVNCI-DGDRKTQFVIDEDACVRCGTCYDKCPFDAI 591



 Score = 40.1 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             CP     +      I  D+C  CG+C   CPV+ I  D
Sbjct: 526 RSCPAGA-CQALIRYRIDQDKCKKCGLCAKNCPVNCIDGD 564


>gi|293376326|ref|ZP_06622563.1| ferredoxin [Turicibacter sanguinis PC909]
 gi|292645015|gb|EFF63088.1| ferredoxin [Turicibacter sanguinis PC909]
          Length = 55

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M   + + CI C    C   CPV+C  EG +  +I  D CIDCG CE  CP ++I
Sbjct: 1  MPRKILDTCIACG--SCAAECPVECISEG-DIYSIDADVCIDCGACEAVCPTESI 52


>gi|288957563|ref|YP_003447904.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288909871|dbj|BAI71360.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 688

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
                T C++VCP        + +AI P  C  CG C   CP  A      P  
Sbjct: 287 RKTGCTRCLDVCPTGAVTPNGDHVAIDPHVCAGCGSCAAVCPTGAATYALPPAA 340



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV  CP     +  +   L+   D C+ CG+C   CP   I    E 
Sbjct: 521 VDVEGCTLCL--ACVGACPTGALLDNADKPMLSFAQDACVQCGLCRTTCPEKVISLVPEI 578

Query: 62  GLEL 65
               
Sbjct: 579 DFRD 582


>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           ++  E C  C  T C  VCPV     G     I  P  CI CG C  +C   AI 
Sbjct: 542 FINPEKCKGC--TLCARVCPVHAITGGRKIPHIIDPQACIRCGTCMEKCKFGAIY 594



 Score = 41.3 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I+P++C  C +C   CPV AI
Sbjct: 540 QYFINPEKCKGCTLCARVCPVHAI 563


>gi|257063420|ref|YP_003143092.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256791073|gb|ACV21743.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 210

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           Y ++  C  C + +CV VCP    ++ +  L  ++ + C+ CG C   CP  A   D
Sbjct: 59  YHISLACNHCANPECVHVCPTGAMHKNDLGLVVVNNERCVGCGYCTIACPYHAPSID 115


>gi|225571993|ref|ZP_03780857.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040526|gb|EEG50772.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
          Length = 368

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + CI CK   C ++C  D     +   AI+ D+C+ CG C   CP DAI P ++ 
Sbjct: 190 PHVNQKLCIGCK--KCAQICAHDAPEFKDLKAAINHDKCVGCGRCLGVCPKDAICPASDE 247

Query: 62  GLELWLKINSEYATQWPNITTKKE 85
             ++   +N + A     +   + 
Sbjct: 248 SNDI---LNCKIAEYTKAVIEDRP 268


>gi|257063055|ref|YP_003142727.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790708|gb|ACV21378.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 212

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C+ C   +C+ VCP     + +  +  +  D CI C  C   CP +  + +++
Sbjct: 88  YRVSTSCMHCDDPNCMRVCPAGAISKVDAGIVQVDKDLCIGCKYCFQACPYEVPRYNSD 146


>gi|288575149|ref|ZP_06393506.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570890|gb|EFC92447.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 229

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E+C+ C  T C + CPV    EG+      I P++C+ CGVC  +CP  AI+ D 
Sbjct: 173 EDCVGC--TICAKACPVGAI-EGKVKEKHVIDPEKCVGCGVCASKCPKGAIEEDE 224



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI C    C++VCP +      E    + +H D C  C  C   CPVDA
Sbjct: 64  EKCIGCG--MCMKVCPANAIERAPEDPKKIIVHNDRCCFCAQCNDICPVDA 112



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++CI CG+C   CP +AI+   E  
Sbjct: 62 DREKCIGCGMCMKVCPANAIERAPEDP 88


>gi|282599783|ref|ZP_06257365.1| tetrathionate reductase complex, subunit B [Providencia rustigianii
           DSM 4541]
 gi|282567821|gb|EFB73356.1| tetrathionate reductase complex, subunit B [Providencia rustigianii
           DSM 4541]
          Length = 250

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ E+ + +   + C+ C  C   CP DA
Sbjct: 105 CNHCDNPPCVPVCPVQATYQREDGIVVVDNERCVGCAYCVQACPYDA 151


>gi|225850216|ref|YP_002730450.1| sulfur reductase FeS subunit [Persephonella marina EX-H1]
 gi|225646174|gb|ACO04360.1| sulfur reductase FeS subunit [Persephonella marina EX-H1]
          Length = 211

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVGALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYLD 107



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 31/120 (25%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPVDA 54
           CI C    C+  CP +          + P     D+C  C           C   CP  A
Sbjct: 89  CIGC--ASCMMACPYNAI-------YLDPVTNSADKCTYCAHRIEVGMMPACVVACPTHA 139

Query: 55  -IKPDTEPGLELWLKINSEYATQWPNITTKKESL---PSAAKMDGVKQKYEKYFSPNPGG 110
            I  D +       +I S+Y     ++  +K  L   P    + G     +   S  P G
Sbjct: 140 NIFGDLDDPES---EI-SKYLKSHRDVMVRKPELGTKPKHFYVRGSTVALDPLASERPEG 195


>gi|227824895|ref|ZP_03989727.1| ferredoxin [Acidaminococcus sp. D21]
 gi|226905394|gb|EEH91312.1| ferredoxin [Acidaminococcus sp. D21]
          Length = 429

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + C  C    CV+ C V      +    I  D CIDCG C   CP  AI    EP  EL 
Sbjct: 14 DRCTGCLL--CVKKCLVQAIRVRDGKAVIISDRCIDCGECIRCCPTRAIAALVEPLEELK 71

Query: 67 -LKINSEYAT 75
            K+N   AT
Sbjct: 72 SYKVNIALAT 81


>gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
 gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C++VCP       ++ + +H ++CI C  C  ECP  A+K + E
Sbjct: 61  CIGC--HHCIDVCPSKAISLIQDHIRVHAEKCIGCRQCVLECPGKALKSEGE 110


>gi|127510991|ref|YP_001092188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636286|gb|ABO21929.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 558

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T+NC LC    CV  CP     +G     L      C+ CG+CE  CP   I
Sbjct: 423 VNTDNCTLCL--SCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVI 474



 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D     ++ + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 203 CLNFCPADAIASVDHKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQALHSYLNKLVTRF 262

Query: 71  SEYATQWPNI 80
              A   P I
Sbjct: 263 RSAAQTAPVI 272


>gi|312602256|ref|YP_004022101.1| ferredoxin--NADP reductase [Burkholderia rhizoxinica HKI 454]
 gi|312169570|emb|CBW76582.1| Ferredoxin--NADP reductase (EC 1.18.1.2) [Burkholderia
          rhizoxinica HKI 454]
          Length = 406

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          CI C    C E CP D      N   ++   C  C  C P CP  AI    +        
Sbjct: 14 CIRCN--TCEETCPNDAITHDANNYVVNAQVCNGCMACVPPCPTGAIDNWHQVLEADAYS 71

Query: 69 INSEYATQWPNITTKKES 86
          I+++ A  W  +  ++  
Sbjct: 72 IDAQLA--WEELPPRQSP 87



 Score = 41.3 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P  CI C  CE  CP DAI  D
Sbjct: 9  IDPQVCIRCNTCEETCPNDAITHD 32


>gi|296104200|ref|YP_003614346.1| anaerobic dimethyl sulfoxide reductase subunit B [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058659|gb|ADF63397.1| anaerobic dimethyl sulfoxide reductase subunit B [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 209

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSVSCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|238752180|ref|ZP_04613661.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
 gi|238709551|gb|EEQ01788.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
          Length = 207

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  ENCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|302390835|ref|YP_003826655.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
 gi|302202912|gb|ADL11590.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acetohalobium arabaticum DSM 5501]
          Length = 55

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + VT+ C+ C+   C++ CP D   EG +  +I  DECI+CG+C  ECP +AI  +
Sbjct: 1  MAFKVTDECVACE--TCLDECPEDAIEEG-DIYSIDEDECIECGICADECPTEAIIEE 55


>gi|258545781|ref|ZP_05706015.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258518971|gb|EEV87830.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 186

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++ + CI C  T C++ CPVD        +  I  DEC  C +C   CPV+ I     
Sbjct: 113 AFIIEDWCIGC--TKCIKACPVDAILGSNQKMHTIISDECTGCRLCVDPCPVNCIIMKPR 170

Query: 61  PGLELW 66
                W
Sbjct: 171 DQKWNW 176



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P++     E       I  D CI C  C   CPVDAI
Sbjct: 95  VEPKPLNADNGAETPPQVAFIIEDWCIGCTKCIKACPVDAI 135


>gi|157963951|ref|YP_001503985.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848951|gb|ABV89450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 559

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V TENC LC    CV  CP     +G +  A+H    +C+ CG+CE  CP   I
Sbjct: 424 VNTENCTLC--MSCVATCPTMALTDGGDRPALHFVEQDCVQCGLCETACPEKVI 475



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 17/49 (34%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+  CP D        + I P  C   G C   CP  AI  D     
Sbjct: 197 TRCLNFCPADAISSVAKKIEIDPYLCHGAGSCTNACPTGAISYDLPTPQ 245


>gi|89897348|ref|YP_520835.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336796|dbj|BAE86391.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 175

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C+   C E CPV  + + E+ + +   ++CI CG+C   CP +A K + +      
Sbjct: 58  ACMHCEKPACAEACPVKAYTKREDGIVVQDHEKCIGCGMCVSACPYEAPKLNKDKKKAEK 117

Query: 67  LKINSEYATQ 76
            ++ +    +
Sbjct: 118 CELCAHLLEK 127


>gi|83310748|ref|YP_421012.1| hydrogenase 2 protein HybA [Magnetospirillum magneticum AMB-1]
 gi|82945589|dbj|BAE50453.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 339

 Score = 57.1 bits (137), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  +C+ C    CV  CPV        +  +  + D CI C  C   CP    +   +
Sbjct: 115 IKRSCLHCADPSCVSACPVSAMQKRATDGVVTYNKDACIGCRYCVAACPFGVPQFQYD 172


>gi|303327208|ref|ZP_07357650.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863196|gb|EFL86128.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 364

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 2   TYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+V  +   C+ C    CV+ CP       +    +  + CI C  C   CPV AI  D 
Sbjct: 186 THVQVDEKTCVGCG--KCVKACPQKALSLRKKKSQVDVNRCIGCFECITVCPVKAISLDW 243

Query: 60  EPGLELWLKINSEYA 74
              +  +++  +EYA
Sbjct: 244 ATEMTPFMERLTEYA 258


>gi|302342956|ref|YP_003807485.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfarculus baarsii DSM 2075]
 gi|301639569|gb|ADK84891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfarculus baarsii DSM 2075]
          Length = 550

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          E C  C    C++ CP       +    I  D C+ CG C   CP DAI+P
Sbjct: 20 EKCTGC--VLCMKACPNQAIRVHDGKAVIRFDHCVACGACYRVCPADAIEP 68



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I P++C  C +C   CP  AI+
Sbjct: 15 LRILPEKCTGCVLCMKACPNQAIR 38


>gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a]
 gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a]
          Length = 489

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY ++ E CI C    C + CP D           I PD+CI CG+C   C  +AI
Sbjct: 432 LTYTISPERCIGC--HLCAKNCPADAISGLVRKPHVIAPDKCIKCGMCMARCKFNAI 486


>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY +  E C  C  T C   CP +    E +    I P  CI CG+C   C  +AI 
Sbjct: 572 TYTIDPEKCRGC--TLCARKCPAEAISGEMKEPHVIDPQLCIKCGICFDSCKFEAIY 626



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP            I P++C  C +C  +CP +AI  + +   
Sbjct: 562 CPAG-VCRSLITYTIDPEKCRGCTLCARKCPAEAISGEMKEPH 603


>gi|158320076|ref|YP_001512583.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140275|gb|ABW18587.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
          Length = 605

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCF--YEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           YV  E CI C    C++  CP      YEG   L  +I PD C+ C +C   CPV+AIK
Sbjct: 536 YVDPEICISC--RSCIKTNCPPLKMKKYEGIEKLKSSIDPDMCVGCSICAQVCPVNAIK 592


>gi|15679729|ref|NP_276847.1| formate hydrogenlyase, iron-sulfur subunit I [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622868|gb|AAB86207.1| formate hydrogenlyase, iron-sulfur subunit I [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 167

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C  C+   C  VCP D   +      + P+ CI CG+C   CP  A+  +     +
Sbjct: 46 CQQCEDAPCRTVCPTDAIDD-----EVDPERCIGCGLCMVVCPFGAVVMEDRKAQK 96


>gi|323700506|ref|ZP_08112418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460438|gb|EGB16303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 185

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKP 57
           +C  C++  C+ VCPV+ + + E+ + +H  ++CI CG C   CP  A K 
Sbjct: 58  SCNHCENPACLNVCPVEAYTKREDGVVVHHQEKCIGCGNCIRSCPYGAPKY 108


>gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 304

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C++VCP       ++ + +H ++CI C  C  ECP  A+K + E
Sbjct: 61  CIGC--HHCIDVCPSKAISLIQDHIRVHAEKCIGCRQCVLECPGKALKSEGE 110


>gi|294085673|ref|YP_003552433.1| DMSO reductase subunit B [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665248|gb|ADE40349.1| DMSO reductase chain B [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 249

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y  E +  + ++PD CI C +C   CP  A + D
Sbjct: 80  SCLHCEEPACVTVCPTGASYKREEDGIVLVNPDTCIGCKLCSWACPYGAREYD 132


>gi|291284040|ref|YP_003500858.1| Electron transport protein hydN [Escherichia coli O55:H7 str.
           CB9615]
 gi|209761974|gb|ACI79299.1| electron transport protein HydN [Escherichia coli]
 gi|290763913|gb|ADD57874.1| Electron transport protein hydN [Escherichia coli O55:H7 str.
           CB9615]
 gi|320662296|gb|EFX29693.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 175

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP      G+ F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRGKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|114777067|ref|ZP_01452087.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
 gi|114552588|gb|EAU55048.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
          Length = 194

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + +V  + CI C  T C++ CPVD           +  D C  C +C   CPVD I    
Sbjct: 105 LAFVREDECIGC--TLCIKACPVDAIIGAPKQYHTVLADHCTGCELCVEPCPVDCIDMLV 162

Query: 60  EPGL-ELW 66
           +P L E W
Sbjct: 163 KPELIEHW 170


>gi|89893061|ref|YP_516548.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1
           precursor [Desulfitobacterium hafniense Y51]
 gi|89332509|dbj|BAE82104.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1
           precursor [Desulfitobacterium hafniense Y51]
          Length = 264

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  CV VCP    +  E+ +  +    CI C  C   CP  A   +         
Sbjct: 121 CNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCMAACPYGARSFNYWDPKPHLA 180

Query: 68  KINSEYATQWPNITTKK 84
           KIN EY  +   +  K 
Sbjct: 181 KINPEYPHRSKGVVEKC 197


>gi|89893786|ref|YP_517273.1| hypothetical protein DSY1040 [Desulfitobacterium hafniense Y51]
 gi|89333234|dbj|BAE82829.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 422

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + CI C    C +VCPV         EG+    +  + C+ CG+C   CP   I+
Sbjct: 291 IAQECIGCG--KCEKVCPVLAISMSTNAEGKKIAQVDHEVCLGCGICVRSCPKKVIE 345



 Score = 41.7 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 16/34 (47%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             N+L     ECI CG CE  CPV AI   T   
Sbjct: 284 TTNYLPKIAQECIGCGKCEKVCPVLAISMSTNAE 317


>gi|113971773|ref|YP_735566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886457|gb|ABI40509.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 188

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPY 104


>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
 gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
          Length = 628

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C  + C   CPV       G+    I  D+CI CG C   C   A+K D
Sbjct: 577 EKCRKC--SMCARNCPVGAISGVPGQKPYVIDHDKCIKCGACMETCRFGAVKRD 628



 Score = 41.3 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
             +I P++C  C +C   CPV AI     PG + ++
Sbjct: 571 HYSIDPEKCRKCSMCARNCPVGAISG--VPGQKPYV 604


>gi|254513803|ref|ZP_05125864.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
 gi|219676046|gb|EED32411.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
          Length = 202

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            +++ E+CI C  T C++ CPVD        +  +   EC  C +C   CPVD I+
Sbjct: 114 AFIIEEDCIGC--TKCIQACPVDAIVGAAKQMHTVIAAECTGCDLCVDPCPVDCIE 167


>gi|218548085|ref|YP_002381876.1| hydrogenase 4, 4Fe-4S subunit [Escherichia fergusonii ATCC 35469]
 gi|218355626|emb|CAQ88237.1| putative hydrogenase 4, 4Fe-4S subunit [Escherichia fergusonii
          ATCC 35469]
 gi|324112972|gb|EGC06948.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
          B253]
 gi|325496488|gb|EGC94347.1| hydrogenase 4, 4Fe-4S subunit [Escherichia fergusonii ECD227]
          Length = 205

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C +VCPV+     ++ + ++   CI C +C   CP  AI
Sbjct: 51 CHHCEDAPCQQVCPVNAISRHDDAIQLNETLCIGCKLCALVCPFGAI 97


>gi|322655203|gb|EFY51512.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
          Length = 171

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 33 AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 92

Query: 60 EPGL 63
          + G 
Sbjct: 93 QTGQ 96


>gi|162456288|ref|YP_001618655.1| hypothetical protein sce8005 [Sorangium cellulosum 'So ce 56']
 gi|161166870|emb|CAN98175.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 101

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +TE+CI C    C   CP +   EG+    I P+ C +C        C+  CPV+ 
Sbjct: 1  MATYITEDCINCG--ACEPECPNEAISEGDEIYVIDPELCTECVGFYDHEACQAVCPVEC 58



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          ++CI+CG CEPECP +AI    E
Sbjct: 7  EDCINCGACEPECPNEAISEGDE 29


>gi|149909449|ref|ZP_01898104.1| oxidoreductase [Moritella sp. PE36]
 gi|149807559|gb|EDM67508.1| oxidoreductase [Moritella sp. PE36]
          Length = 633

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C  C    C++ CP   + +   + A+   PD C  CG C   CP +A + D   G
Sbjct: 141 ISMACNHCDDPVCLKGCPTKAYTKHVEYGAVLQDPDTCFGCGYCTWVCPYNAPQLDPIKG 200

Query: 63  L 63
            
Sbjct: 201 Q 201


>gi|303249089|ref|ZP_07335331.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
 gi|1914864|emb|CAA72423.1| cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans JJ]
 gi|302489504|gb|EFL49448.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
          Length = 421

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 2  TYVVTEN---CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+V  +   CI C    C+  CP        GE    + P  CI+CG C   CPV AI 
Sbjct: 25 AYIVQVDETKCIGCD--TCMGYCPTGAITGESGEPHKVVDPAACINCGQCLTHCPVAAIY 82

Query: 57 P 57
           
Sbjct: 83 E 83



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          +   +CI C  C   CP  AI  ++    +
Sbjct: 30 VDETKCIGCDTCMGYCPTGAITGESGEPHK 59


>gi|219666328|ref|YP_002456763.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536588|gb|ACL18327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 264

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C H  CV VCP    +  E+ +  +    CI C  C   CP  A   +         
Sbjct: 121 CNHCDHPPCVRVCPTQATFRREDGVVGMDMHRCIGCRFCMAACPYGARSFNYWDPKPHLA 180

Query: 68  KINSEYATQWPNITTKK 84
           KIN EY  +   +  K 
Sbjct: 181 KINPEYPHRSKGVVEKC 197


>gi|222053655|ref|YP_002536017.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221562944|gb|ACM18916.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
          sp. FRC-32]
          Length = 754

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          TE C  C    CV  CPV      + F  I  + CI CG C   CP  A
Sbjct: 8  TEKCRKC--YSCVRSCPVKAIKVEKTFTEIIFERCIGCGNCLSNCPQHA 54


>gi|169633882|ref|YP_001707618.1| hypothetical protein ABSDF2362 [Acinetobacter baumannii SDF]
 gi|169152674|emb|CAP01675.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 263

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI-----KPDTE 60
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I          
Sbjct: 90  DECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCIDLVEDTQALP 147

Query: 61  PGLELWLKIN 70
              + + + N
Sbjct: 148 SEQQRFAEQN 157



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           PV      +   AI   DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRMKAIIREDECIGCTKCINACPVDAI 107


>gi|315425450|dbj|BAJ47114.1| ABC transporter ATP-binding protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 595

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 23/107 (21%)

Query: 7   ENC--ILCKHTDCVEVCP-----VDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKP- 57
           + C    C +  C+  CP     ++    GE+   I  +  CI CG+C  +CP +AI   
Sbjct: 13  DRCDSKKCGNWPCITYCPPVRNNIEAIKMGEDGFPIISETLCISCGICVKKCPFEAITII 72

Query: 58  ----DTEPGLELWLKINS-EYATQWPNITTKKESLPSAAKMDGVKQK 99
               +    +     +N  +               P A K+ G+  K
Sbjct: 73  NLPTELREDVAHHYGVNKFKLFRL---------PYPEAGKVVGLLGK 110


>gi|311108737|ref|YP_003981590.1| ferredoxin 4 [Achromobacter xylosoxidans A8]
 gi|310763426|gb|ADP18875.1| ferredoxin 4 [Achromobacter xylosoxidans A8]
 gi|317405495|gb|EFV85804.1| ferredoxin [Achromobacter xylosoxidans C54]
          Length = 83

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE CI C    C   CP D    GE++  I PD C +C        C+  CPV+ 
Sbjct: 1  MALTITEECINCDV--CEPQCPNDAISMGEDYYVIDPDRCTECVGHHDEPQCKVVCPVEC 58

Query: 55 IK--PDTEPGLEL 65
          I+  P  + G E 
Sbjct: 59 IELHPQWKEGQEQ 71


>gi|224367281|ref|YP_002601444.1| Fdx3 [Desulfobacterium autotrophicum HRM2]
 gi|223689997|gb|ACN13280.1| Fdx3 [Desulfobacterium autotrophicum HRM2]
          Length = 179

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +   C  C+ + C +VCPV+   +  N + +  + C+ C  C   CP  AI     P L
Sbjct: 52  TIPVQCRHCEDSPCAQVCPVNAIIQKGNHIDVIDELCVGCKSCVLACPFGAISVTERPAL 111


>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
          Length = 619

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  + C   CPV C     E    I+   CI CG C   CPV AI
Sbjct: 546 DKCIGC--SLCARKCPVSCISGSREEKYTINQLSCIKCGTCMDVCPVKAI 593



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 11  LCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             +   C   VCP            I  D+CI C +C  +CPV  I
Sbjct: 524 HIRDKSCANKVCPDLM------HFEIDKDKCIGCSLCARKCPVSCI 563


>gi|16763989|ref|NP_459604.1| hydrogenase protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56414251|ref|YP_151326.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62179213|ref|YP_215630.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615182|ref|YP_001589147.1| hypothetical protein SPAB_02950 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550859|ref|ZP_02344615.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168231615|ref|ZP_02656673.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168240451|ref|ZP_02665383.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168260879|ref|ZP_02682852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465779|ref|ZP_02699661.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818769|ref|ZP_02830769.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194444851|ref|YP_002039852.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449002|ref|YP_002044643.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194470652|ref|ZP_03076636.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249684|ref|YP_002145585.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197262291|ref|ZP_03162365.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363174|ref|YP_002142811.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|198245238|ref|YP_002214603.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200390569|ref|ZP_03217180.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|238911563|ref|ZP_04655400.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|16419123|gb|AAL19563.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56128508|gb|AAV78014.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62126846|gb|AAX64549.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364546|gb|ABX68314.1| hypothetical protein SPAB_02950 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403514|gb|ACF63736.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194407306|gb|ACF67525.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194457016|gb|EDX45855.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195632027|gb|EDX50547.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197094651|emb|CAR60175.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197213387|gb|ACH50784.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197240546|gb|EDY23166.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197939754|gb|ACH77087.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603014|gb|EDZ01560.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205324243|gb|EDZ12082.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334041|gb|EDZ20805.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205340164|gb|EDZ26928.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344169|gb|EDZ30933.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349919|gb|EDZ36550.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261245885|emb|CBG23686.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|301157213|emb|CBW16700.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911643|dbj|BAJ35617.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320084879|emb|CBY94669.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321226189|gb|EFX51240.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713677|gb|EFZ05248.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128928|gb|ADX16358.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326622355|gb|EGE28700.1| putative hydrogenase protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 185

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|303256259|ref|ZP_07342275.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
 gi|302860988|gb|EFL84063.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
          Length = 450

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          ++  +NC+ C    C + CPVD    G   +  I  D C+ CG C   CP  AI+ 
Sbjct: 37 HINKDNCVGCD--TCRKFCPVDAISGGLGAIHKIRDDACVSCGQCLSACPFGAIEQ 90



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAI 55
          + I+ D C+ C  C   CPVDAI
Sbjct: 36 IHINKDNCVGCDTCRKFCPVDAI 58


>gi|288931383|ref|YP_003435443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893631|gb|ADC65168.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 187

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +   C+ C    C++VCPV+     E +  + +  D CI CG C   CP  A + 
Sbjct: 52  IPLQCLHCNDPPCMKVCPVNAIWKREEDGIVLVKKDICIGCGYCASACPFGAPQF 106


>gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
 gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
          Length = 571

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +V + C  C  T C  VCPV            I  ++CI CG C  +C  DAI
Sbjct: 518 IVADKCRGC--TACARVCPVGAISGTVKQPHTIDVNKCIKCGACIEKCKFDAI 568



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             CP     +      I  D+C  C  C   CPV AI
Sbjct: 503 HRCPAG-VCKALLHYEIVADKCRGCTACARVCPVGAI 538


>gi|16759572|ref|NP_455189.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142655|ref|NP_805997.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213023991|ref|ZP_03338438.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213051862|ref|ZP_03344740.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213419294|ref|ZP_03352360.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|213425125|ref|ZP_03357875.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581054|ref|ZP_03362880.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213622427|ref|ZP_03375210.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647695|ref|ZP_03377748.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|289812473|ref|ZP_06543102.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
 gi|25285330|pir||AG0577 molybdopterin-containing oxidoreductase iron-sulfur chain STY0660
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501864|emb|CAD05089.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138286|gb|AAO69857.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 185

 Score = 56.7 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|251789031|ref|YP_003003752.1| hydrogenase 2 protein HybA [Dickeya zeae Ech1591]
 gi|247537652|gb|ACT06273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 338

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +H D   C  C  C   CP +  K D E  
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALKKDPKTGVVHYDASICTGCRYCMVACPFNVPKYDYENP 172

Query: 63  L 63
           L
Sbjct: 173 L 173


>gi|157373499|ref|YP_001472099.1| anaerobic dimethyl sulfoxide reductase, subunit B [Shewanella
           sediminis HAW-EB3]
 gi|157315873|gb|ABV34971.1| anaerobic dimethyl sulfoxide reductase, subunit B [Shewanella
           sediminis HAW-EB3]
          Length = 205

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y  + +C  C    C + CP    +   E+ L  IH D CI C  CE  CP DA + D 
Sbjct: 59  AYYTSISCNHCDTPACTKACPTGAMHKRSEDGLVMIHDDICIGCSSCEQACPYDAPQLDE 118


>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
 gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
          Length = 635

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +  E CI C    C + CP D           I+P++CI CG+C   C   AI
Sbjct: 578 LTYTINPELCIGC--HLCAKNCPADAISGLVRKPHVINPEKCIKCGMCMARCKFKAI 632


>gi|239933594|ref|ZP_04690547.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces ghanaensis
           ATCC 14672]
          Length = 338

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPDTEPG 62
           ++ C  C H  C++VCP    +  E   + + PD C  CG C   CP   I  +PD    
Sbjct: 157 SDVCKHCTHAGCLDVCPTGALFRTEFGSVVVQPDICNGCGYCVSGCPYGVIDRRPDDGRA 216

Query: 63  LE 64
            +
Sbjct: 217 WK 218


>gi|183231113|ref|XP_656317.2| dihydropyrimidine dehydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|169802613|gb|EAL50934.2| dihydropyrimidine dehydrogenase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 901

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 5   VTENCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  NCI C    C   C  +      +  N   +  ++CI C +C   CPV+AI+ 
Sbjct: 827 IKNNCIGCG--SCALSCRDNSTTAIVKDGNRYRVDDEKCIGCALCSSVCPVNAIEY 880


>gi|161504217|ref|YP_001571329.1| hypothetical protein SARI_02324 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865564|gb|ABX22187.1| hypothetical protein SARI_02324 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 185

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|189423641|ref|YP_001950818.1| electron transfer flavoprotein subunit alpha [Geobacter lovleyi
          SZ]
 gi|189419900|gb|ACD94298.1| Electron transfer flavoprotein alpha subunit [Geobacter lovleyi
          SZ]
          Length = 443

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          CI C    C   CPV+C    E     +  ++CI C  C   CP  A++    P  +  L
Sbjct: 22 CIACGAR-CESSCPVNCISMNEAGEPVVDTEKCIGCLKCVKVCPAQALEMFFTPEEQKIL 80

Query: 68 K 68
          +
Sbjct: 81 E 81


>gi|92114243|ref|YP_574171.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91797333|gb|ABE59472.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 335

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI----- 55
            ++    CI C  T C++ CPVD        +  +   EC  C +C   CPVD I     
Sbjct: 77  AFIREAECIGC--TKCIQACPVDAILGAAKQMHTVIAGECTGCELCVAPCPVDCIDILPH 134

Query: 56  ----KPDTEPGLELWLKINSEYATQ 76
                 +T    + +L   +E   Q
Sbjct: 135 PEWVAAETRAQQDAYLTRRAELGRQ 159



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 22 PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          P+    E      I   ECI C  C   CPVDAI
Sbjct: 66 PLAQPAESPKVAFIREAECIGCTKCIQACPVDAI 99


>gi|117922054|ref|YP_871246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614386|gb|ABK49840.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 188

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPY 104


>gi|301155291|emb|CBW14757.1| hydrogenase 2 4Fe-4S ferredoxin-type component [Haemophilus
           parainfluenzae T3T1]
          Length = 346

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV  + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D 
Sbjct: 105 AYVKKQ-CMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDY 163

Query: 60  E 60
           +
Sbjct: 164 D 164


>gi|260428995|ref|ZP_05782972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Citreicella
           sp. SE45]
 gi|260419618|gb|EEX12871.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Citreicella
           sp. SE45]
          Length = 249

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVPVCPTGASYKRVEDGIVLVNEDACIGCGLCAWACPYGAREMDLAAG 137


>gi|238749691|ref|ZP_04611196.1| Tetrathionate reductase subunit B [Yersinia rohdei ATCC 43380]
 gi|238712346|gb|EEQ04559.1| Tetrathionate reductase subunit B [Yersinia rohdei ATCC 43380]
          Length = 244

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ ++ +  I    C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVIDNTRCVGCAYCVQACPYEA 146


>gi|197118468|ref|YP_002138895.1| electron transfer flavoprotein subunit alpha [Geobacter
          bemidjiensis Bem]
 gi|197087828|gb|ACH39099.1| electron transfer flavoprotein, alpha subunit [Geobacter
          bemidjiensis Bem]
          Length = 436

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            V+   CI C    C  VCP++     E     I  ++CI C  C   CP  A++    
Sbjct: 14 ARVIAGKCIACGAR-CQSVCPINGVEMSEQGEPVIETEKCIGCVKCVKACPAGALEMFYT 72

Query: 61 PGL 63
          P  
Sbjct: 73 PEE 75


>gi|41018387|sp|Q00388|VHUB_METVO RecName: Full=Polyferredoxin protein vhuB
 gi|1747410|emb|CAA43512.1| polyferredoxin [Methanococcus voltae PS]
          Length = 398

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VTE C+ C  ++CV VCPVD     +    I  ++CI C VC   CP +AI 
Sbjct: 128 VTEACVGC--SECVPVCPVDAISIEDELAVIDTEKCIYCSVCAQTCPWNAIY 177



 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ VTE CI C+   CVEVCP D   Y  E+ +   P+ C  C +CE  CPVDAI  + E
Sbjct: 192 SFTVTEECIGCE--KCVEVCPGDMITYNREDLIVKLPEACPACHLCEQNCPVDAISLEVE 249



 Score = 41.7 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C LC    C   CP     E    L  +  +CI CG C   CP  
Sbjct: 34 CTLC--FSCASACPTGALVENNGKLIYNSSKCIKCGNCATACPTG 76



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDE-------CIDCGVCEPECPVDAIK 56
           C+LC+   CV+ CP+D        +        P E       C+ C  C P CPVDAI 
Sbjct: 91  CVLCE--KCVDACPIDIISIPGKIDKPEREVTIPQEPIKVTEACVGCSECVPVCPVDAIS 148

Query: 57  PDTE 60
            + E
Sbjct: 149 IEDE 152



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 10/51 (19%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECP 51
           CI C    CV  CP      G+        N +   P  C +CG C   CP
Sbjct: 311 CIRCG--ACVMKCPTGALKMGKITHEGKEYNRIEFSPALCNECGECVDVCP 359


>gi|332702842|ref|ZP_08422930.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552991|gb|EGJ50035.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 698

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           E C+      CV+VCP D  + G + L  ++P EC  CG C   CP   I
Sbjct: 136 EGCLGLG--SCVKVCPFDAIHMGPDNLPHVNPAECRACGKCVAVCPRGVI 183


>gi|322631438|gb|EFY28196.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
          Length = 162

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 17 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 73


>gi|291441974|ref|ZP_06581364.1| formate dehydrogenase beta subunit [Streptomyces ghanaensis ATCC
           14672]
 gi|291344869|gb|EFE71825.1| formate dehydrogenase beta subunit [Streptomyces ghanaensis ATCC
           14672]
          Length = 333

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPDTEPG 62
           ++ C  C H  C++VCP    +  E   + + PD C  CG C   CP   I  +PD    
Sbjct: 152 SDVCKHCTHAGCLDVCPTGALFRTEFGSVVVQPDICNGCGYCVSGCPYGVIDRRPDDGRA 211

Query: 63  LE 64
            +
Sbjct: 212 WK 213


>gi|238762649|ref|ZP_04623619.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
 gi|238699294|gb|EEP92041.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
          Length = 207

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  ENCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|254173867|ref|ZP_04880538.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermococcus sp. AM4]
 gi|214032116|gb|EEB72947.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermococcus sp. AM4]
          Length = 237

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V   C  C+   C++ CP     + E  F+ ++P+ CI C +C   CP    K + E
Sbjct: 91  VPMRCQHCEDAPCMKACPTGAISKTEEGFVVLNPNMCIGCLMCVMACPFGHPKYEPE 147


>gi|167386568|ref|XP_001737815.1| dihydropyrimidine dehydrogenase [Entamoeba dispar SAW760]
 gi|165899267|gb|EDR25906.1| dihydropyrimidine dehydrogenase, putative [Entamoeba dispar SAW760]
          Length = 901

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 5   VTENCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  NCI C    C   C  +      +  N   +  ++CI C +C   CPV+AI+ 
Sbjct: 827 IKNNCIGCG--SCALSCRDNSTTAIVKDGNRYRVDDEKCIGCALCSSVCPVNAIEY 880


>gi|27366362|ref|NP_761890.1| electron transport complex protein RnfB [Vibrio vulnificus CMCP6]
 gi|37679375|ref|NP_933984.1| electron transport complex protein RnfB [Vibrio vulnificus YJ016]
 gi|320156873|ref|YP_004189252.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
 gi|33301651|sp|Q8D889|RNFB_VIBVU RecName: Full=Electron transport complex protein rnfB
 gi|71153697|sp|Q7MM82|RNFB_VIBVY RecName: Full=Electron transport complex protein rnfB
 gi|27362563|gb|AAO11417.1| Electron transport complex protein rnfB [Vibrio vulnificus CMCP6]
 gi|37198118|dbj|BAC93955.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Vibrio
           vulnificus YJ016]
 gi|319932185|gb|ADV87049.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
          Length = 198

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPL 164

Query: 58  DTEPGLELWLKINS 71
           +T      W ++N+
Sbjct: 165 ETTTETWKW-QLNA 177


>gi|257064912|ref|YP_003144584.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792565|gb|ACV23235.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           T  C  C +  CVEVCP    + + E  L  I+ D+CI CG C   CP D
Sbjct: 64  TMACQHCSNPACVEVCPTGASWKDTETGLVLINSDDCIGCGACLNACPYD 113


>gi|39995884|ref|NP_951835.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens PCA]
 gi|39982648|gb|AAR34108.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens PCA]
 gi|298504898|gb|ADI83621.1| formate dehydrogenase, iron-sulfur subunit [Geobacter
           sulfurreducens KN400]
          Length = 277

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F +     +  H  +CI C  C   CP    K +
Sbjct: 82  EMCMHCNDPACASVCPVGAFEKTAEGPVVYHSKKCIGCRFCMVACPFGIPKYE 134


>gi|323700521|ref|ZP_08112433.1| hypothetical protein DND132_3115 [Desulfovibrio sp. ND132]
 gi|323460453|gb|EGB16318.1| hypothetical protein DND132_3115 [Desulfovibrio desulfuricans
           ND132]
          Length = 239

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV VCPV   Y+ EN L  +  D+C+ CG C   CP DA
Sbjct: 89  CNHCEEPACVPVCPVHATYKDENGLVLVDSDKCLACGFCVQACPYDA 135


>gi|301064419|ref|ZP_07204844.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441501|gb|EFK05841.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 369

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C    CV  C        E    I+ ++C+ CG C   CP +AI       + L+ K
Sbjct: 196 CVGCGD--CVRHCAGSAISLKEKKAFINTEKCVGCGECILICPNEAIDVRWSRDIPLFQK 253

Query: 69  INSEYA 74
             +EYA
Sbjct: 254 KMAEYA 259


>gi|213580783|ref|ZP_03362609.1| putative dimethyl sulfoxide reductase subunit [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-0664]
          Length = 155

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 10 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 66


>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
 gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + +NCI C    C + CP D    E +    I   +C+ CG C  +C   AI+
Sbjct: 574 YFINDNCIGCGL--CKKNCPADAITGEKKEKHVIDTTKCLKCGACMEKCKKHAIE 626



 Score = 40.1 bits (93), Expect = 0.097,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
               D CI CG+C+  CP DAI  + +   
Sbjct: 574 YFINDNCIGCGLCKKNCPADAITGEKKEKH 603


>gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 599

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E C+ C  T C  VCPV+           I P+ C  CG C   C   AI
Sbjct: 547 EKCVGC--TACSRVCPVEAISGSVRKPHEIDPEICTRCGSCLAVCRFGAI 594



 Score = 46.3 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + I  ++C+ C  C   CPV+AI        E+  +I
Sbjct: 542 VVIDKEKCVGCTACSRVCPVEAISGSVRKPHEIDPEI 578


>gi|296132288|ref|YP_003639535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296030866|gb|ADG81634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 297

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V   C+ C    CV VCP    ++ E+ +  I  D CI C  C   CP  AI  + + 
Sbjct: 102 YKVKMQCMHCNEPSCVAVCPTGAAFKREDGIVLIDGDVCIACRNCVVACPY-AIPGENKE 160

Query: 62  G 62
            
Sbjct: 161 S 161


>gi|264678371|ref|YP_003278278.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
 gi|262208884|gb|ACY32982.1| tetrathionate reductase subunit B [Comamonas testosteroni CNB-2]
          Length = 241

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   F   +  + +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 96  CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 154


>gi|220904925|ref|YP_002480237.1| NADH-quinone oxidoreductase subunit I [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869224|gb|ACL49559.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 234

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 17/99 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGENF---LAIHPDECIDCGVCEPECPVDA- 54
              C+ C    C  VCP  C         +G        I    CI CG C   CPV+A 
Sbjct: 65  GSRCVAC--MRCARVCPSHCIRIRSHRSVDGSRKVDAYVIDALRCIYCGYCAEVCPVNAI 122

Query: 55  ----IKPDTEPGLELWLKINSEYATQWPNITTKKESLPS 89
               I        + ++   +     W     +K SL  
Sbjct: 123 VLTEIYAYAGRTRQEFVFDEAHLLRNWDEFAAEKGSLEG 161


>gi|188587487|ref|YP_001919032.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352174|gb|ACB86444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 384

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA-IKPDTEPGLE 64
           ENC LC+   CV+VCP D  Y  E + + I+ + C+ CG C   C  +A I P +E   +
Sbjct: 198 ENCTLCE--RCVDVCPHDAIYRTEEDQIEINYEICVKCGRCARVCKEEALIVPQSEERFQ 255

Query: 65  L 65
            
Sbjct: 256 K 256



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           P+ C  C  C   CP DAI   TE      ++IN E
Sbjct: 197 PENCTLCERCVDVCPHDAIYR-TEEDQ---IEINYE 228


>gi|83591015|ref|YP_431024.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83573929|gb|ABC20481.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 189

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C  VCPV         + ++   CI C +C   CP   I
Sbjct: 52 CRHCEDAPCARVCPVKAIEIKNQMVYLNEGLCIGCKMCALVCPFGCI 98


>gi|319949417|ref|ZP_08023479.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Dietzia
           cinnamea P4]
 gi|319436914|gb|EFV91972.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Dietzia
           cinnamea P4]
          Length = 321

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  CV+VCP       E   + +  D C  CG C   CP   I+
Sbjct: 134 SDVCKHCTHAACVDVCPTGALMHTEFGTVVVQSDICNGCGYCVSACPYGVIE 185


>gi|300897096|ref|ZP_07115558.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300973429|ref|ZP_07172185.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300993136|ref|ZP_07180222.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|301017308|ref|ZP_07182072.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|301048188|ref|ZP_07195224.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|301325658|ref|ZP_07219119.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|300299946|gb|EFJ56331.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300305151|gb|EFJ59671.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300359104|gb|EFJ74974.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300400281|gb|EFJ83819.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300410771|gb|EFJ94309.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300847513|gb|EFK75273.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|315288770|gb|EFU48168.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|315291277|gb|EFU50637.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|315297627|gb|EFU56904.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
          Length = 289

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 124


>gi|289191512|ref|YP_003457453.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
 gi|288937962|gb|ADC68717.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
          Length = 238

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + Y + +N C LC    C+ VCP     + ++F+ I   +C+ CG C+  CP +AI    
Sbjct: 142 LPYAIDKNKCKLCL--KCINVCPNGAIAKRDDFVEISLPKCLGCGNCKKVCPYNAIIEGK 199

Query: 60  EPGLELWLKINSE 72
           E  + +  KI++E
Sbjct: 200 EIKMRVR-KIDAE 211


>gi|157148563|ref|YP_001455882.1| hydrogenase 2 protein HybA [Citrobacter koseri ATCC BAA-895]
 gi|157085768|gb|ABV15446.1| hypothetical protein CKO_04390 [Citrobacter koseri ATCC BAA-895]
          Length = 289

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +  + D C  C  C   CP +  K D
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYNKDVCTGCRYCMVACPYNVPKYD 124


>gi|51893193|ref|YP_075884.1| oxidoreductase anaerobic dimethyl sulfoxide reductase subunit B
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856882|dbj|BAD41040.1| oxidoreductase similar to anaerobic dimethyl sulfoxide reductase
           subunit B [Symbiobacterium thermophilum IAM 14863]
          Length = 216

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C+   C++ CPV+ + +  + L IH P  CI C  C   CP    + D E G
Sbjct: 58  ACNHCEDPACMKGCPVEAYTKRADGLVIHDPTACIGCQYCTWTCPYSVPQFDPEQG 113


>gi|315634304|ref|ZP_07889591.1| hydrogenase-2 operon protein HybA [Aggregatibacter segnis ATCC
           33393]
 gi|315476894|gb|EFU67639.1| hydrogenase-2 operon protein HybA [Aggregatibacter segnis ATCC
           33393]
          Length = 346

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            YV  + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D 
Sbjct: 105 AYVKKQ-CMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDY 163

Query: 60  E 60
           +
Sbjct: 164 D 164


>gi|312898191|ref|ZP_07757582.1| ferredoxin [Megasphaera micronuciformis F0359]
 gi|310620688|gb|EFQ04257.1| ferredoxin [Megasphaera micronuciformis F0359]
          Length = 54

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          +VV++ C+ C    C   CP     EGE    +  D CIDCG CE  CP  AI  +
Sbjct: 2  HVVSDECVKCG--ACEATCPTGAITEGETKYVVG-DACIDCGACESVCPTGAIAAE 54


>gi|296109071|ref|YP_003616020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295433885|gb|ADG13056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 392

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT+NC+ CK   C+  CPV+     E  N + I  ++CI C +C   CP +AI 
Sbjct: 135 VVTDNCVGCK--ICIPECPVNAITFNEETNKVEIDKNKCIYCSICAQTCPWNAIY 187



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V  ++C+ CK   CVE+CP +     E+ L  I P  C  C +C   CPV+A++ D E
Sbjct: 205 VNEDSCVFCKL--CVEICPGNMIKSDESKLVVIPPKSCPACKLCVNICPVNALELDVE 260



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCF------------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CILC    CV++CP+D               E      +  D C+ C +C PECPV+AI 
Sbjct: 99  CILCL--KCVDICPIDIISLPGVIEKPKKKIEVPKEPIVVTDNCVGCKICIPECPVNAIT 156

Query: 57  PDTE 60
            + E
Sbjct: 157 FNEE 160



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP D     +    +    CI CG C   CP  A+K
Sbjct: 283 KKCASVCPTDAIVVDDKNKEV--RMCIVCGACTVACPTGALK 322



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          + C++C    C E CP        NF     + CI C  C   CP  A+  +T
Sbjct: 8  DLCLVC--YACQEECPTKAIDIDNNF-----NTCILCFRCVEACPTGALSKET 53


>gi|206575826|ref|YP_002238703.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288935637|ref|YP_003439696.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|290509667|ref|ZP_06549038.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
 gi|206564884|gb|ACI06660.1| anaerobic dimethyl sulfoxide reductase, B subunit [Klebsiella
           pneumoniae 342]
 gi|288890346|gb|ADC58664.1| dimethylsulfoxide reductase, chain B [Klebsiella variicola At-22]
 gi|289779061|gb|EFD87058.1| anaerobic dimethyl sulfoxide reductase subunit B [Klebsiella sp.
           1_1_55]
          Length = 205

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++  C  C+   C +VCP    ++ ++ F+ ++   CI C  C   CP  A + + +
Sbjct: 60  AYYLSIACNHCEDPACTKVCPSGAMHKRDDGFVVVNEAVCIGCRYCHMACPYGAPQYNAD 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|126699072|ref|YP_001087969.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|254975022|ref|ZP_05271494.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092411|ref|ZP_05321889.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255306435|ref|ZP_05350606.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|255314150|ref|ZP_05355733.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516828|ref|ZP_05384504.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649929|ref|ZP_05396831.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683084|ref|YP_003214369.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686682|ref|YP_003217815.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520014|ref|ZP_07406361.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|115250509|emb|CAJ68333.1| putative iron-sulfur protein [Clostridium difficile]
 gi|260209247|emb|CBA62547.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212698|emb|CBE03782.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 424

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPEC 50
           ENC+ C    C+  CP+D       +G+ ++ I  D C+ CGVC   C
Sbjct: 293 ENCVKCG--KCITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNC 338



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+ + C+ CG C   CP+DAI    E G + ++KI+ +
Sbjct: 290 INHENCVKCGKCITACPIDAISKVKEDG-KEYIKIDED 326


>gi|88706625|ref|ZP_01104328.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
 gi|88699121|gb|EAQ96237.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
          Length = 202

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            +++ E+CI C  T C++ CPVD        +  +   EC  C +C   CPVD I+
Sbjct: 114 AFIIEEDCIGC--TKCIQACPVDAILGAAKQMHTVIASECTGCDLCVDPCPVDCIE 167



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +  E       I  ++CI C  C   CPVDAI
Sbjct: 96  VEPTPLDAEHGAETETTVAFIIEEDCIGCTKCIQACPVDAI 136


>gi|332162877|ref|YP_004299454.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604279|emb|CBY25777.1| hydrogenase-2 operon protein hybA precursor [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667107|gb|ADZ43751.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863324|emb|CBX73447.1| hydrogenase-2 operon protein hybA [Yersinia enterocolitica W22703]
          Length = 342

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYD 168


>gi|255100494|ref|ZP_05329471.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 424

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPEC 50
           ENC+ C    C+  CP+D       +G+ ++ I  D C+ CGVC   C
Sbjct: 293 ENCVKCG--KCITACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNC 338



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+ + C+ CG C   CP+DAI    E G + ++KI+ +
Sbjct: 290 INHENCVKCGKCITACPIDAISKVKEDG-KEYIKIDED 326


>gi|213053234|ref|ZP_03346112.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 212

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|126733437|ref|ZP_01749184.1| 4Fe-4S binding domain protein [Roseobacter sp. CCS2]
 gi|126716303|gb|EBA13167.1| 4Fe-4S binding domain protein [Roseobacter sp. CCS2]
          Length = 253

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D + G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRAEDGIVLVNESDCIGCGLCAWACPYGARELDAKEG 137


>gi|325676247|ref|ZP_08155926.1| formate dehydrogenase beta subunit [Rhodococcus equi ATCC 33707]
 gi|325552808|gb|EGD22491.1| formate dehydrogenase beta subunit [Rhodococcus equi ATCC 33707]
          Length = 315

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 126 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQNDICNGCGYCIPACPYGVI 176


>gi|293607600|ref|ZP_06689934.1| ferredoxin [Achromobacter piechaudii ATCC 43553]
 gi|292814033|gb|EFF73180.1| ferredoxin [Achromobacter piechaudii ATCC 43553]
          Length = 83

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++TE CI C    C   CP D    G+++  I PD+C +C        C+  CPV+ 
Sbjct: 1  MALLITEECINCDV--CEPQCPNDAISMGDDYYVIDPDKCTECVGHHDEPQCKVVCPVEC 58

Query: 55 IK--PDTEPGLEL 65
          I+  P    G E 
Sbjct: 59 IELHPQWNEGQEQ 71


>gi|222836452|gb|EEE74859.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   Y+ ++ +  I    CI C  C   CP DA  I  +T+   +
Sbjct: 97  CNHCDNPPCVPVCPVQATYQRKDGIVVIDNKRCIGCAYCVQACPYDARFINSETKTADK 155


>gi|167771401|ref|ZP_02443454.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
 gi|167666041|gb|EDS10171.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
          Length = 403

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            YV    C+ C    C   C  D         +I   +C+ CG C   CPVDA++     
Sbjct: 225 PYVEQSVCVGCG--MCKRNCAHDAIAITNRKASIDHSKCVGCGRCIGACPVDAVQA---A 279

Query: 62  GLELWLKINSEYAT 75
             E +  +N + + 
Sbjct: 280 QDEAFDILNKKISE 293


>gi|24375548|ref|NP_719591.1| polysulfide reductase, subunit B [Shewanella oneidensis MR-1]
 gi|24350427|gb|AAN57035.1|AE015837_7 polysulfide reductase, subunit B [Shewanella oneidensis MR-1]
          Length = 188

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVSIHGDKCVGCMYCVAACPY 104


>gi|89519313|gb|ABD75790.1| iron-sulfur cluster-binding protein [uncultured bacterium]
          Length = 380

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV+E CI C    C + CPV      E    I    CI C  C   CP DAI+
Sbjct: 318 VVSEKCIGCGF--CRDACPVQVISMVEKHAEIKQRHCIHCYCCHEMCPHDAIE 368


>gi|15602251|ref|NP_245323.1| electron transport complex protein RnfB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|17368782|sp|Q9CNP1|RNFB_PASMU RecName: Full=Electron transport complex protein rnfB
 gi|12720633|gb|AAK02470.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 198

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I PD C  C +C P CP D I
Sbjct: 108 AFIDEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVPPCPTDCI 160


>gi|95931130|ref|ZP_01313855.1| sigma54 specific transcriptional regulator, Fis family
          [Desulfuromonas acetoxidans DSM 684]
 gi|95132820|gb|EAT14494.1| sigma54 specific transcriptional regulator, Fis family
          [Desulfuromonas acetoxidans DSM 684]
          Length = 762

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA-IKPDTEP 61
           V E C  C    CV  CPV       N+   I+P  CI CG C   C   A I  D+  
Sbjct: 7  TVKERCRKC--YACVRNCPVKAIKVKANYAEVIYP-RCIGCGKCIAVCTQKAKIIADSSE 63

Query: 62 GLELWLK 68
              +L 
Sbjct: 64 ETRQFLA 70


>gi|300815520|ref|ZP_07095744.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300821581|ref|ZP_07101727.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300905875|ref|ZP_07123608.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300916895|ref|ZP_07133598.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300923654|ref|ZP_07139682.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300931882|ref|ZP_07147179.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300935656|ref|ZP_07150629.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300950798|ref|ZP_07164684.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300958379|ref|ZP_07170520.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301304180|ref|ZP_07210296.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301643637|ref|ZP_07243678.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|309793561|ref|ZP_07687987.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|300314963|gb|EFJ64747.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300402344|gb|EFJ85882.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300415865|gb|EFJ99175.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300420095|gb|EFK03406.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300449893|gb|EFK13513.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300459156|gb|EFK22649.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300460305|gb|EFK23798.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300525719|gb|EFK46788.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531449|gb|EFK52511.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300840593|gb|EFK68353.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301078021|gb|EFK92827.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|308122518|gb|EFO59780.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315256897|gb|EFU36865.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|324018159|gb|EGB87378.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
          Length = 289

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 124


>gi|57642010|ref|YP_184488.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160334|dbj|BAD86264.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 168

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C+   C++VCP    Y   +   I +P++CI C +C   CP      D +
Sbjct: 47  NCRHCEKAPCMDVCPAGAIYRDSDGAVIINPNKCIGCLMCLAACPFGVPTFDVK 100


>gi|331000390|ref|ZP_08324069.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
 gi|329571980|gb|EGG53652.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
          Length = 447

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          ++  +NC+ C    C + CPVD    G   +  I  D C+ CG C   CP  AI+ 
Sbjct: 34 HINKDNCVGCD--TCRKFCPVDAISGGLGAIHKIRDDACVSCGQCLSACPFGAIEQ 87



 Score = 37.4 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAI 55
          + I+ D C+ C  C   CPVDAI
Sbjct: 33 IHINKDNCVGCDTCRKFCPVDAI 55


>gi|299131979|ref|ZP_07025174.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298592116|gb|EFI52316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 252

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI C +C   CP  A + D + G
Sbjct: 79  SCLHCEEPACVTVCPTGASYKRTEDGIVLVNADTCIGCKLCSWACPYGAREFDEDDG 135


>gi|225175529|ref|ZP_03729523.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168858|gb|EEG77658.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter
           alkaliphilus AHT 1]
          Length = 285

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +CI C    C + CP       + + AI  ++CI CG C   CP +A
Sbjct: 164 DCISCGL--CADTCPSGAITMEDGYPAIDREKCIHCGECVAVCPTEA 208



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 18  VEVCPVDCFYEGENFL----AIHP----DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           V  CP  C    EN       I P    ++CI CG+C   CP  AI  +       +  I
Sbjct: 135 VTGCPRSCAKPQENDFGFIGVIKPKFKQNDCISCGLCADTCPSGAITMED-----GYPAI 189

Query: 70  NSE 72
           + E
Sbjct: 190 DRE 192


>gi|310777929|ref|YP_003966262.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
 gi|309747252|gb|ADO81914.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
          Length = 366

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           E CI C    C ++CP    +  EN L  I  D+C  CGVC  +CP DA
Sbjct: 315 EKCIGCG--ICADLCPYHAIHINENKLAVIDADKCFGCGVCVSKCPKDA 361



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 37  PDECIDCGVCEPECPVDAIK 56
            ++CI CG+C   CP  AI 
Sbjct: 314 KEKCIGCGICADLCPYHAIH 333


>gi|301027422|ref|ZP_07190759.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           69-1]
 gi|300394930|gb|EFJ78468.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           69-1]
          Length = 644

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|269925728|ref|YP_003322351.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789388|gb|ACZ41529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 279

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C+EVCP       E + + I  D C  C  C   CP   I
Sbjct: 86  SDVCKHCVQAGCLEVCPTGAIIRTEYDTVVIQSDVCNGCRACIAACPFGVI 136


>gi|225619304|ref|YP_002720530.1| hypothetical protein BHWA1_00357 [Brachyspira hyodysenteriae WA1]
 gi|225214123|gb|ACN82857.1| hypothetical protein BHWA1_00357 [Brachyspira hyodysenteriae WA1]
          Length = 55

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M  V+  +C+ C    C+  C  D   EG N   I PD+C DC  CE  CP +AI P
Sbjct: 1  MPRVINNDCVACG--SCLPECAFDAISEG-NIYVIDPDKCTDCAACEAVCPSNAINP 54


>gi|162452617|ref|YP_001614984.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56']
 gi|161163199|emb|CAN94504.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56']
          Length = 785

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           +C  C+   C+  CP     +         D  C  CG C   CP + I
Sbjct: 373 SCQHCESPACMIECPTGAIGKDTGGEVFIRDALCTGCGACAKACPWENI 421


>gi|289676762|ref|ZP_06497652.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae FF5]
          Length = 291

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASRLMHTVII-DECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEM 138


>gi|16761444|ref|NP_457061.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140859|ref|NP_804201.1| anaerobic reductase subunit [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213425326|ref|ZP_03358076.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580857|ref|ZP_03362683.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213612662|ref|ZP_03370488.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857321|ref|ZP_03384292.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25285325|pir||AH0822 probable anaerobic reductase component STY2774 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503744|emb|CAD02732.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136484|gb|AAO68050.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 209

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|238790269|ref|ZP_04634043.1| Hydrogenase-2 operon protein hybA [Yersinia frederiksenii ATCC
           33641]
 gi|238721619|gb|EEQ13285.1| Hydrogenase-2 operon protein hybA [Yersinia frederiksenii ATCC
           33641]
          Length = 346

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D +
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYD 164


>gi|322613726|gb|EFY10665.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619531|gb|EFY16407.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625036|gb|EFY21865.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629521|gb|EFY26297.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634048|gb|EFY30785.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635514|gb|EFY32225.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639810|gb|EFY36489.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644432|gb|EFY40973.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648577|gb|EFY45026.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322658250|gb|EFY54516.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664251|gb|EFY60448.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669418|gb|EFY65567.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673145|gb|EFY69251.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676537|gb|EFY72605.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683287|gb|EFY79301.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685827|gb|EFY81820.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194770|gb|EFZ79958.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199542|gb|EFZ84633.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204683|gb|EFZ89681.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208131|gb|EFZ93076.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210938|gb|EFZ95800.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217013|gb|EGA01735.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221811|gb|EGA06215.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323229299|gb|EGA13423.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235386|gb|EGA19470.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237428|gb|EGA21491.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245182|gb|EGA29183.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248885|gb|EGA32811.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253172|gb|EGA37004.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255406|gb|EGA39174.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262035|gb|EGA45600.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266346|gb|EGA49834.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269823|gb|EGA53273.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 209

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|300936167|ref|ZP_07151103.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           21-1]
 gi|300458624|gb|EFK22117.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           21-1]
          Length = 644

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|238793441|ref|ZP_04637066.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
          29909]
 gi|238727214|gb|EEQ18743.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
          29909]
          Length = 161

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 38 CRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 83


>gi|189460038|ref|ZP_03008823.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
 gi|189433199|gb|EDV02184.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
          Length = 321

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P +C  C  CE ECP +AI
Sbjct: 218 TAACIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCETECPQNAI 265



 Score = 41.3 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVSACQFDAIHMNPETGLPEVDESKCTACGACSKACPRNIIE 189


>gi|145298774|ref|YP_001141615.1| hydrogenase 2 protein HybA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851546|gb|ABO89867.1| hydrogenase-2 small subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 348

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   P  C  C  C   CP D  K D +  
Sbjct: 111 IKKQCMHCVDPNCVSVCPVQALTKDPKTGIVHYDPSVCTGCRYCMVGCPFDVPKYDYDNP 170

Query: 63  L 63
           L
Sbjct: 171 L 171


>gi|293406385|ref|ZP_06650311.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298382121|ref|ZP_06991718.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
 gi|300896219|ref|ZP_07114768.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           198-1]
 gi|291426391|gb|EFE99423.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298277261|gb|EFI18777.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
 gi|300359953|gb|EFJ75823.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           198-1]
          Length = 644

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|283786992|ref|YP_003366857.1| oxidoreductase, 4Fe-4S subunit [Citrobacter rodentium ICC168]
 gi|282950446|emb|CBG90108.1| putative oxidoreductase, 4Fe-4S subunit [Citrobacter rodentium
           ICC168]
          Length = 158

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV+ CPV     G   +      CI C  C   CP  AI  +T  GL
Sbjct: 51  CHQCENAPCVKACPVGALTMGPERVEADAGRCIACQSCVVACPFGAITIETPVGL 105


>gi|257065409|ref|YP_003145081.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793062|gb|ACV23732.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 211

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y VT  C  C++ +CV+VCP +  +  E+    I   +CI C  C   CP      + E 
Sbjct: 59  YFVTVGCQHCENPECVKVCPTEASHIAEDGTIQIDKAKCIGCQFCVMACPYGVRYLNEEE 118


>gi|251792563|ref|YP_003007289.1| hydrogenase 2 protein HybA [Aggregatibacter aphrophilus NJ8700]
 gi|247533956|gb|ACS97202.1| HybA protein [Aggregatibacter aphrophilus NJ8700]
          Length = 346

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP D  K D +
Sbjct: 107 IKKQCMHCVDPNCVAVCPVQALTKDPKTGIVKYDPDICTGCRYCMVGCPFDVPKYDYD 164


>gi|227887703|ref|ZP_04005508.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|227835099|gb|EEJ45565.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|307555091|gb|ADN47866.1| hydrogenase-2 electron transfer subunit [Escherichia coli ABU
           83972]
          Length = 328

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +C+ VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCISVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|168243309|ref|ZP_02668241.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168466719|ref|ZP_02700573.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194443941|ref|YP_002041787.1| dimethylsulfoxide reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194450531|ref|YP_002046587.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194402604|gb|ACF62826.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408835|gb|ACF69054.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195630698|gb|EDX49290.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205337679|gb|EDZ24443.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 209

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|161612711|ref|YP_001586676.1| hypothetical protein SPAB_00409 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197250854|ref|YP_002147482.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|161362075|gb|ABX65843.1| hypothetical protein SPAB_00409 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197214557|gb|ACH51954.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 209

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|156974788|ref|YP_001445695.1| hypothetical protein VIBHAR_02506 [Vibrio harveyi ATCC BAA-1116]
 gi|156526382|gb|ABU71468.1| hypothetical protein VIBHAR_02506 [Vibrio harveyi ATCC BAA-1116]
          Length = 209

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C +  C +VCP    +  E + F+ +    CI C  C   CP  A +   
Sbjct: 62  AYYLSISCNHCINPACTKVCPSGAMHKREEDGFVVVDESVCIGCKSCHMACPYGAPQYSE 121

Query: 60  EPGL 63
           E G 
Sbjct: 122 EKGH 125


>gi|123443798|ref|YP_001007769.1| hydrogenase 2 protein HybA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090759|emb|CAL13636.1| hydrogenase-2 operon protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 342

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYD 168


>gi|301064797|ref|ZP_07205171.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441091|gb|EFK05482.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           Y+  E C  C    C   CPVD    G+N +  I  ++CI CG C   CP
Sbjct: 176 YIDPEKCKAC--MICARSCPVDAIVGGKNLIHVIDQEKCIKCGTCFEACP 223



 Score = 40.9 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I P++C  C +C   CPVDAI
Sbjct: 175 YYIDPEKCKACMICARSCPVDAI 197


>gi|253701244|ref|YP_003022433.1| formate dehydrogenase transmembrane domain protein [Geobacter sp.
           M21]
 gi|251776094|gb|ACT18675.1| Formate dehydrogenase transmembrane domain protein [Geobacter sp.
           M21]
          Length = 263

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C+ C    C++VCP     Y   E  +  + ++CI C  C   CP +  + D++ 
Sbjct: 79  QRCMHCGDAGCIKVCPAPGALYRTKEGSVVFNKEKCISCKYCVSACPFNVPRYDSDD 135


>gi|194474799|gb|ACF74512.1| arsenate respiratory reductase iron sulfur subunit
           [Halarsenatibacter silvermanii]
          Length = 229

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 9   CILCKHTDCVEVCPVDC---FYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C +  CVE CPVD    F + E+ L +   D CI C  CE ECP   I  + E    
Sbjct: 58  CNHCDNAPCVEACPVDPKAIFKDSESNLVLMDADRCIGCRNCENECPYGVISYNAEEAHP 117

Query: 65  LW 66
            W
Sbjct: 118 FW 119


>gi|119776748|ref|YP_929488.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
 gi|119769248|gb|ABM01819.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 580

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+NC LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 445 VATDNCTLC--MSCVAICPTAALKDGGDEPKLLFTEQNCVQCGLCEAACPEKVI 496



 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D     E  + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 225 CLNFCPADAIQSVEKKIEIDPYLCHGAGSCTNACPTGAISYDLPNPQALHSFLNKLVSRF 284

Query: 71  SEYATQWPNI 80
            + A + P I
Sbjct: 285 RDEALEAPVI 294


>gi|114563171|ref|YP_750684.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114334464|gb|ABI71846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 190

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP    Y  EN L  IH D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVSVCPTGAAYIDENGLVSIHNDKCVGCMYCVAACPY 104


>gi|315179710|gb|ADT86624.1| tetrathionate reductase, subunit B [Vibrio furnissii NCTC 11218]
          Length = 255

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            + +   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA
Sbjct: 102 AFTLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|312138684|ref|YP_004006020.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodococcus
           equi 103S]
 gi|311888023|emb|CBH47335.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodococcus
           equi 103S]
          Length = 315

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 126 SDVCKHCTHAACLDVCPTGALFRTEFGTVVVQNDICNGCGYCLPACPYGVI 176


>gi|289191766|ref|YP_003457707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938216|gb|ADC68971.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 260

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVE CP++   +  + + I+ D+CI CG C   CP +AIK
Sbjct: 209 CVGC--FVCVEECPINAIEQEGDKVKINKDKCILCGRCADVCPANAIK 254



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+    CI C    C + CPVD   + +      I  D+C+ C +C   CPV AI 
Sbjct: 50  YINETKCIRCNL--CYKECPVDAIEKAKVKKSAKIIEDKCVKCEICAQTCPVGAIY 103



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-------HPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C EVCP  C   E E    I         + C+ C VC  ECP++AI
Sbjct: 167 VNLDLCMGCG--ACAEVCPKKCIKVERELGEVIKTRDIEVDKNLCVGCFVCVEECPINAI 224

Query: 56  KPD 58
           + +
Sbjct: 225 EQE 227



 Score = 37.4 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 28/79 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--------------------------HP 37
           ++ + C+ C+   C + CPV   Y  E    I                            
Sbjct: 82  IIEDKCVKCE--ICAQTCPVGAIYVIEGRAEIEDSEVHYTIKEKSIPHRKIRLKRYELDE 139

Query: 38  DECIDCGVCEPECPVDAIK 56
           + CI CG+C   CP +AIK
Sbjct: 140 NTCIKCGICARFCPTNAIK 158



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I+  +CI C +C  ECPVDAI+
Sbjct: 49 LYINETKCIRCNLCYKECPVDAIE 72


>gi|260893719|ref|YP_003239816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
            degensii KC4]
 gi|260865860|gb|ACX52966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
            degensii KC4]
          Length = 1016

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 9    CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C    CV +CP +     +      I+   C  CGVC   CP  AI        +++
Sbjct: 951  CSGC--RICVNLCPYNAISFDDVNKVSVINEAVCKGCGVCAAACPSKAITMGGFTDEQIF 1008

Query: 67   LKINSEYA 74
             +I +  +
Sbjct: 1009 AEIEALLS 1016



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 24  DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           D    G     + P +C  C +C   CP +AI  D 
Sbjct: 935 DAILAGGIVSKVDPAKCSGCRICVNLCPYNAISFDD 970



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 26/92 (28%), Gaps = 35/92 (38%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECID-- 42
           YV  E C+ C    C   CPV   D F EG                    I   +C+   
Sbjct: 102 YVDPEKCVACGD--CAAKCPVKVKDEFNEGLGERKAIFIKYSQAVPAAYMIDATKCLRIL 159

Query: 43  -------------CGVCEPECPVDAIKPDTEP 61
                        CG+C   C   AI  D   
Sbjct: 160 HAEKAKAAGKEPPCGLCAKACQRGAINFDDTE 191



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP 78
            + P++C+ CG C  +CPV  +K +   GL     I  +Y+   P
Sbjct: 102 YVDPEKCVACGDCAAKCPVK-VKDEFNEGLGERKAIFIKYSQAVP 145


>gi|237736266|ref|ZP_04566747.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421614|gb|EEO36661.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 329

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           I C    C + CPV       N   I P +CI CG+C  +CP  AI  D EP     ++ 
Sbjct: 219 IGCG--ICAKNCPVGAITVENNLAKIDPAKCISCGICATKCPTKAIVSDVEPKKAEIIEE 276

Query: 70  N 70
           N
Sbjct: 277 N 277



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            H DC +VCPV      E  +  +  D+CI CG+C+  CP   I
Sbjct: 145 GHGDCEKVCPVGAIKVNEKGIAEVDEDKCISCGLCQKACPKKVI 188



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ ENC  C  T C   CPV       +    +  ++C+ CG+C   C   AIK
Sbjct: 273 IIEENCKGC--TACARKCPVGAIEGAVKEKHHVITEKCVGCGICFDTCKFKAIK 324



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C   CP              I  + C  C  C  +CPV AI+
Sbjct: 247 CISCG--ICATKCPTKAIVSDVEPKKAEIIEENCKGCTACARKCPVGAIE 294


>gi|224368284|ref|YP_002602447.1| HdrA1 [Desulfobacterium autotrophicum HRM2]
 gi|223691000|gb|ACN14283.1| HdrA1 [Desulfobacterium autotrophicum HRM2]
          Length = 1016

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 28/91 (30%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENF---------------LAIHPDECI--- 41
           YV  + CI C    C E CP    D + EG N+                AI PD CI   
Sbjct: 103 YVDEDKCIACGL--CAEKCPKKVPDEYNEGLNYRKAAYIKYGQTVPLKYAIDPDNCIMIN 160

Query: 42  --DCGVCEPECPVDAIKPDTEPGLELWLKIN 70
              CGVC   CP  AI  + +P    ++ +N
Sbjct: 161 KGKCGVCAKICPTGAINFEMKPE---FVDVN 188



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 5    VTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDE--CIDCGVCEPECPVDAIK 56
            VT+NC  C    C++VCP +          G+    I  D   C  CG+C   CP + I 
Sbjct: 939  VTQNCDGC--ALCLDVCPYNALTLVEFEENGKQHRRIKTDRALCKGCGICAATCPKEGIV 996

Query: 57   PDTEPGLELWLKINS 71
             D     +L  ++++
Sbjct: 997  VDGFTPGQLRAQVDA 1011


>gi|59713264|ref|YP_206039.1| oxidoreductase, Fe-S subunit [Vibrio fischeri ES114]
 gi|197337765|ref|YP_002157662.1| dimethylsulfoxide reductase, chain B [Vibrio fischeri MJ11]
 gi|59481512|gb|AAW87151.1| oxidoreductase, Fe-S subunit [Vibrio fischeri ES114]
 gi|197315017|gb|ACH64466.1| dimethylsulfoxide reductase, chain B [Vibrio fischeri MJ11]
          Length = 204

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+ F+ +  + CI C  C   CP  A + + E
Sbjct: 59  SYYLSIACNHCDEPACTKVCPSGAMHKREDGFVVVDEEVCIGCKYCTMACPYGAPQYNEE 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|219668159|ref|YP_002458594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538419|gb|ACL20158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 421

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + CI C    C +VCPV         EG+    +  + C+ CG+C   CP   I+
Sbjct: 290 IAQECIGCG--KCEKVCPVLAISMSTNAEGKKVAQVDHEVCLGCGICVRSCPKKVIE 344



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
             N+L     ECI CG CE  CPV AI   T    +   +++ E
Sbjct: 283 TTNYLPKIAQECIGCGKCEKVCPVLAISMSTNAEGKKVAQVDHE 326


>gi|303257427|ref|ZP_07343440.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|331000028|ref|ZP_08323724.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302859784|gb|EFL82862.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|329573176|gb|EGG54793.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 306

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           +C  C +  CV VCP  C    EN +  + P++CI C  CE  CP D  + 
Sbjct: 85  SCFHCTNAGCVTVCPTGCLKYEENGVVSVSPEKCIGCRYCEMACPFDVPRY 135


>gi|260768009|ref|ZP_05876943.1| tetrathionate reductase subunit B [Vibrio furnissii CIP 102972]
 gi|260616039|gb|EEX41224.1| tetrathionate reductase subunit B [Vibrio furnissii CIP 102972]
          Length = 255

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            + +   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA
Sbjct: 102 AFTLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|291326372|ref|ZP_06573930.1| tetrathionate reductase complex, subunit B [Providencia rettgeri
           DSM 1131]
 gi|291314566|gb|EFE55019.1| tetrathionate reductase complex, subunit B [Providencia rettgeri
           DSM 1131]
          Length = 252

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+ + +   + C+ C  C   CP DA
Sbjct: 107 CNHCDNPPCVPVCPVQATFQREDGIVVVDNERCVGCAYCVQACPYDA 153


>gi|167761070|ref|ZP_02433197.1| hypothetical protein CLOSCI_03468 [Clostridium scindens ATCC 35704]
 gi|167661304|gb|EDS05434.1| hypothetical protein CLOSCI_03468 [Clostridium scindens ATCC 35704]
          Length = 159

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 1   MTY-----VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
           M Y      V   C+ C+   C+EVCPV   +  E + + I+PD+CI C +C   CP+  
Sbjct: 40  MAYEEAAISVPMMCMQCEEPCCMEVCPVGAIFRDEKDAVIINPDKCIGCKMCMNACPLGN 99

Query: 55  IKPDTEPGL 63
           I  +TE   
Sbjct: 100 IGFNTERRQ 108


>gi|86605090|ref|YP_473853.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
 gi|86553632|gb|ABC98590.1| iron-sulfur cluster-binding protein [Synechococcus sp. JA-3-3Ab]
          Length = 75

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCVE CPV C + G+       ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTDICEGV--ADCVEACPVACIHPGDGKNAKGTDYFWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + AI P+ +P L+
Sbjct: 59 EGAILPEEKPHLQ 71


>gi|326560090|gb|EGE10480.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 46P47B1]
 gi|326564196|gb|EGE14432.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 12P80B1]
          Length = 275

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 117 DCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I   +CI C  C P CPVDAI
Sbjct: 113 IQEADCIGCTKCIPACPVDAI 133



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  ++T+ C  C+   C+  CPVDC 
Sbjct: 140 MHSIITDLCTGCEL--CLAPCPVDCI 163


>gi|312136492|ref|YP_004003829.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224211|gb|ADP77067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 164

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  CK+  CVE CP            +  D+CI CG C  ECP  AI        +  L 
Sbjct: 44  CHHCKNAPCVEACPTGAM----KINYVDTDKCIGCGSCALECPFGAISIKNNVAHKCNLC 99

Query: 69  INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
            N +Y        TK  +L    K   +K+K E+Y + 
Sbjct: 100 DNLDYPACVRACPTKALTLIDVEKF--IKRKKEEYLNK 135



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 18/57 (31%), Gaps = 11/57 (19%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVDA 54
           YV T+ CI C    C   CP        N       +C  C       C   CP  A
Sbjct: 65  YVDTDKCIGCG--SCALECPFGAISIKNNVAH----KCNLCDNLDYPACVRACPTKA 115


>gi|294141483|ref|YP_003557461.1| hypothetical protein SVI_2712 [Shewanella violacea DSS12]
 gi|293327952|dbj|BAJ02683.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 683

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 154 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 209


>gi|78221547|ref|YP_383294.1| twin-arginine translocation pathway signal [Geobacter
           metallireducens GS-15]
 gi|78192802|gb|ABB30569.1| tetrathionate reductase beta subunit [Geobacter metallireducens
           GS-15]
          Length = 260

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+  + +  +    CI C  C   CP  
Sbjct: 126 AFFVPKLCNQCDNPACVQVCPVGATYQTPDGVVLVDRKHCIGCAYCIMACPYG 178


>gi|15219265|ref|NP_178022.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)
           [Arabidopsis thaliana]
 gi|297842689|ref|XP_002889226.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           [Arabidopsis lyrata subsp. lyrata]
 gi|3929364|sp|Q42599|NDUS8_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|666977|emb|CAA59061.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|3152573|gb|AAC17054.1| Match to NADH:ubiquinone oxidoreductase gb|X84318 from A.thaliana.
           ESTs gb|Z27005, gb|T04711, gb|T45078 and gb|Z28689 come
           from this gene [Arabidopsis thaliana]
 gi|15081697|gb|AAK82503.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
 gi|18252265|gb|AAL62013.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
 gi|21593880|gb|AAM65847.1| NADH dehydrogenase, putative [Arabidopsis thaliana]
 gi|110740838|dbj|BAE98516.1| hypothetical protein [Arabidopsis thaliana]
 gi|297335067|gb|EFH65485.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           [Arabidopsis lyrata subsp. lyrata]
 gi|332198072|gb|AEE36193.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Arabidopsis
           thaliana]
          Length = 222

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAVCPAQAITIEAEERED 147



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|219667254|ref|YP_002457689.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537514|gb|ACL19253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 197

 Score = 56.7 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C++  CV+VCPV    + E+  + I  D CI C  C   CP DA  I P+     +
Sbjct: 59  CNHCENPSCVKVCPVKATTQKEDGTVVIDYDLCIGCKYCIAACPYDARFINPERRTAEK 117


>gi|262382202|ref|ZP_06075340.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B]
 gi|262297379|gb|EEY85309.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B]
          Length = 415

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV 52
          M + +T+  +C  C    CV+ CP  C    E+   FL   +    CIDCG+CE  CPV
Sbjct: 1  MIH-ITDKRDCCGCN--SCVQRCPKSCIRMREDDEGFLYPEVDESVCIDCGLCEKVCPV 56


>gi|220909526|ref|YP_002484837.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 7425]
 gi|219866137|gb|ACL46476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7425]
          Length = 75

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT  C      DCV+ CPV C + G        ++  I    CIDCG+C   CPV
Sbjct: 1  MAHTIVTNTCEGV--ADCVDACPVACIHPGPAKNLKGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+    L+ 
Sbjct: 59 EGAIIPEERSDLQQ 72


>gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulfide oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulphide oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1139

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 20/73 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           E C  C   +C  VCPV+   E                    N   I  D C  CG C+ 
Sbjct: 116 ERCNGCG--ECTRVCPVEVPDEFNAGLATRKAVYLPVPHNLPNSYVIDTDACNHCGACQN 173

Query: 49  ECPVDAIKPDTEP 61
            CP  AI  + E 
Sbjct: 174 ACPTGAIDLNLEA 186



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC+   CV  CP     + E E  + +    C  CG C   CP  A
Sbjct: 1074 CSLCE--RCVVACPFHARWYDEEEERIVVDEFVCQGCGACSAACPNGA 1119



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 11/42 (26%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           I P+ C  CG C   CPV+   PD         + N+  AT+
Sbjct: 113 IDPERCNGCGECTRVCPVEV--PD---------EFNAGLATR 143


>gi|254439365|ref|ZP_05052859.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
 gi|198254811|gb|EDY79125.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 307]
          Length = 242

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D E 
Sbjct: 59  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDAEA 114


>gi|157145943|ref|YP_001453262.1| hypothetical protein CKO_01696 [Citrobacter koseri ATCC BAA-895]
 gi|157083148|gb|ABV12826.1| hypothetical protein CKO_01696 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +    CI C  C   CP     + P T+   
Sbjct: 111 QSCQHCEDAPCIDVCPTGASWRDERGIVRVDESRCIGCSYCIGACPYQVRYLNPQTKVAD 170

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 171 KCDFCAESRLAKGFPPICV--NACPEHALIFGREDSPE 206


>gi|119511224|ref|ZP_01630340.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
          CCY9414]
 gi|119464102|gb|EAW45023.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
          CCY9414]
          Length = 74

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C +EG        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTDVCEGV--ADCVDACPVACIHEGPGKNVKGTDWYWIDFATCIDCGICIEVCPV 58

Query: 53 -DAIKPDTEPGLEL 65
           DAI P+    L+ 
Sbjct: 59 ADAIVPEERSDLQK 72


>gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 594

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E C  C    C + CPVD    E +    I    CI CG+C   C  DAI
Sbjct: 541 VIEEACTGC--HLCYKNCPVDAITGETKKVHHIDQKICIKCGMCYEVCKFDAI 591



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C      E   F  I  + C  C +C   CPVDAI  +T+
Sbjct: 528 CRAGVCKELIKFSVI-EEACTGCHLCYKNCPVDAITGETK 566


>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 624

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C  + C +VCPV       +    I  ++CI CG C   CP  AIK D
Sbjct: 576 CKGC--SKCSKVCPVGAISGKIKEPFVIDQNKCIKCGACLETCPFKAIKED 624



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I P  C  C  C   CPV AI
Sbjct: 571 IDPSMCKGCSKCSKVCPVGAI 591


>gi|312143460|ref|YP_003994906.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904111|gb|ADQ14552.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 331

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C  + CV+ CPVD     +N   I  ++C+DCG+C  +CP   I+   E
Sbjct: 217 CIAC--SLCVKACPVDAIEMKDNLAVIDYEKCVDCGICAEKCPTGTIEFQGE 266



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
              DC  +CP D     +N L  I PD C  CG C  ECP
Sbjct: 144 GFGDCKVICPFDAIIMNDNGLPEIDPDVCTGCGKCIEECP 183



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + +NC+ C  T C + CPVD        L  I  + CI CG+C   C VDA+
Sbjct: 273 INDNCVGC--TLCAKACPVDAVEGEIKKLHKIDQNLCIQCGLCYEACNVDAV 322



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 18/78 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH----------------PDECIDCGVCEPEC 50
           + C  C    C+E CP +           H                   CI C +C   C
Sbjct: 170 DVCTGCG--KCIEECPRNILLLAPYKSKNHIRCSSHNIGKIVRKTCEVGCIACSLCVKAC 227

Query: 51  PVDAIKPDTEPGLELWLK 68
           PVDAI+      +  + K
Sbjct: 228 PVDAIEMKDNLAVIDYEK 245


>gi|296163947|ref|ZP_06846582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900702|gb|EFG80073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 95

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 3  YVVTENCILCKHTDCVEVCP--VDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
          + + + CI C    C   CP  VD   +  +       I  DECIDCG C P CPVD I 
Sbjct: 9  FYIDDTCIGCG--ACEHSCPGRVDAISKKADDFLGRFVIDLDECIDCGKCVPLCPVDCIH 66

Query: 57 P 57
           
Sbjct: 67 D 67


>gi|291085425|ref|ZP_06353063.2| protein NrfC [Citrobacter youngae ATCC 29220]
 gi|291070960|gb|EFE09069.1| protein NrfC [Citrobacter youngae ATCC 29220]
          Length = 239

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C  C    C+EVCP    +  EN +  +    CI C  C   CP      +    +  
Sbjct: 107 QSCQHCDDAPCIEVCPTGASWRDENGIVRVDKSSCIGCSYCIGACPYQVRYLNPRTKVAD 166

Query: 66  WLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYE 101
                +E   A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--NACPEHALIFGREDSPE 202


>gi|254452377|ref|ZP_05065814.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 238]
 gi|198266783|gb|EDY91053.1| 4Fe-4S binding domain protein [Octadecabacter antarcticus 238]
          Length = 268

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D E 
Sbjct: 86  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMDAEA 141


>gi|161527803|ref|YP_001581629.1| ATPase RIL [Nitrosopumilus maritimus SCM1]
 gi|160339104|gb|ABX12191.1| ABC transporter related [Nitrosopumilus maritimus SCM1]
          Length = 595

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 1  MTYVVT----ENCI--LCKHTDCVEVCPV-----DCF--YEGENFLAIHPDECIDCGVCE 47
          MT+ V     E C    C   +C++ CPV     DC    E      I  D C  CG+C 
Sbjct: 1  MTHRVGVLDHELCQPKKCG-LECIKYCPVNKSGADCIVLNEESKKAQIDEDICNGCGICV 59

Query: 48 PECPVDAI 55
            CP DAI
Sbjct: 60 KVCPFDAI 67


>gi|296113097|ref|YP_003627035.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis RH4]
 gi|295920791|gb|ADG61142.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis RH4]
 gi|326560473|gb|EGE10855.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 7169]
 gi|326565795|gb|EGE15957.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC1]
 gi|326570448|gb|EGE20488.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC8]
 gi|326571131|gb|EGE21155.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC7]
 gi|326577145|gb|EGE27039.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis O35E]
          Length = 275

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 117 DCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I   +CI C  C P CPVDAI
Sbjct: 113 IQEADCIGCTKCIPACPVDAI 133



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  ++T+ C  C+   C+  CPVDC 
Sbjct: 140 MHSIITDLCTGCEL--CLAPCPVDCI 163


>gi|218780880|ref|YP_002432198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762264|gb|ACL04730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 366

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E+C+ C    C E C  +     E      ++PDECI CGVC   CP  A+K
Sbjct: 288 VAGEDCVGCG--TCTERCFFNALTVDEETERAVVNPDECIGCGVCALGCPTGALK 340


>gi|330949992|gb|EGH50252.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae Cit 7]
          Length = 291

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASKLMHTVII-DECTGCDLCVAPCPVDCIE 137



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEM 138


>gi|301060755|ref|ZP_07201570.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445152|gb|EFK09102.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           Y+  E C  C    C   CPVD    G+N +  I  ++CI CG C   CP
Sbjct: 176 YIDPEKCKAC--MICARSCPVDAIVGGKNLIHVIDQEKCIKCGTCFEACP 223



 Score = 40.9 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I P++C  C +C   CPVDAI
Sbjct: 175 YYIDPEKCKACMICARSCPVDAI 197


>gi|237746743|ref|ZP_04577223.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
 gi|229378094|gb|EEO28185.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
          Length = 162

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG+CE  CPVDAI
Sbjct: 61  ERCIGCKL--CEAVCPAKAILIETGEREDGSRRTTRYEIDQSKCIFCGLCEEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          + CI C +CE  CP  AI  +T
Sbjct: 61 ERCIGCKLCEAVCPAKAILIET 82


>gi|255281250|ref|ZP_05345805.1| putative dehydrogenase [Bryantella formatexigens DSM 14469]
 gi|255268207|gb|EET61412.1| putative dehydrogenase [Bryantella formatexigens DSM 14469]
          Length = 368

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 24/76 (31%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL----AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C  C    C+E C V+     ++       I    CI CG CE  CP             
Sbjct: 10 CAGC--MACIEKCKVNAITMVDDLYAYNAVIDEKACIGCGACERVCP------------- 54

Query: 65 LWLKINSEYATQWPNI 80
               N   A + P I
Sbjct: 55 -----NVFLAEKKPPI 65


>gi|218706393|ref|YP_002413912.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UMN026]
 gi|218433490|emb|CAR14393.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli UMN026]
          Length = 639

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|331015678|gb|EGH95734.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 291

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+   
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-DECTGCDLCVAPCPVDCIEMHA 140

Query: 60  EP 61
            P
Sbjct: 141 LP 142



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEM 138


>gi|288930526|ref|YP_003434586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288892774|gb|ADC64311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 251

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C+ C++  CV+VCPV   ++ E+ L  +  + CI C  C   CP    + + +   E +
Sbjct: 64  PCMHCENAPCVKVCPVGATWKREDGLVLVDFERCIGCRYCITACPYGVRQFNWQDADENF 123

Query: 67  LK 68
            +
Sbjct: 124 KQ 125


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C  C    C   CPV+    E +    I+ + CI CG C  +CP  AI
Sbjct: 543 IVADKCKGCGL--CARNCPVNAISGELKQPHVINQEACIKCGTCFEKCPFGAI 593



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP     +      I  D+C  CG+C   CPV+AI  + +   
Sbjct: 530 CPAG-VCQALLSYTIVADKCKGCGLCARNCPVNAISGELKQPH 571


>gi|219850506|ref|YP_002464939.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219544765|gb|ACL26503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 318

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V   C+ C +  C  VCPV   Y  E+ +  +  ++CI C  C   CP  A
Sbjct: 149 FVPRPCMQCDNPPCTSVCPVSATYTNEHGVVAVDYEQCIGCRACIAACPYGA 200


>gi|20093521|ref|NP_613368.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
          kandleri AV19]
 gi|19886359|gb|AAM01298.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
          kandleri AV19]
          Length = 89

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E C+ C    C   CP  C    ++   I  D C  CG+CE  CPV+AI+   E G
Sbjct: 36 EKCMNCGL--CFMYCPDGCIRPSDDGYVIDYDYCKGCGICESVCPVNAIEMVLEEG 89


>gi|27380595|ref|NP_772124.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27353760|dbj|BAC50749.1| blr5484 [Bradyrhizobium japonicum USDA 110]
          Length = 656

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+++CP        + +A++ D C  CG C   CP  A      P    
Sbjct: 271 CLDLCPTGAITPDGDHVAVNADVCAGCGQCAAACPTGAASYALPPADTQ 319



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V T  C LC    CV  CP            +    D C+ CG+C+  CP   I
Sbjct: 500 VDTGGCTLCL--SCVSACPTGALRADPERPVLKFVEDACVQCGLCQSTCPEKVI 551



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 22  PVDCFY--EGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           PVD     EG    AI  D   C  C  C   CP  A++ D E  +  +++
Sbjct: 483 PVDVIALPEGAPIGAITVDTGGCTLCLSCVSACPTGALRADPERPVLKFVE 533


>gi|326575679|gb|EGE25602.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis CO72]
          Length = 275

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 117 DCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I   +CI C  C P CPVDAI
Sbjct: 113 IQEADCIGCTKCIPACPVDAI 133



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  ++T+ C  C+   C+  CPVDC 
Sbjct: 140 MHSIITDLCTGCEL--CLAPCPVDCI 163


>gi|288932026|ref|YP_003436086.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM
          10642]
 gi|288894274|gb|ADC65811.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM
          10642]
          Length = 479

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 1  MTYVVT---ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
          M + ++   + CI C    CV  CP +   E +    +     C+ CG C   CP  AI+
Sbjct: 1  MVFEISIDRDRCIKCL--RCVRYCPTEALGEEDKMPVVKKQTACVGCGNCVDVCPAYAIQ 58



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          ++I  D CI C  C   CP +A+  + +
Sbjct: 5  ISIDRDRCIKCLRCVRYCPTEALGEEDK 32


>gi|238788854|ref|ZP_04632645.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii
          ATCC 33641]
 gi|238723159|gb|EEQ14808.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii
          ATCC 33641]
          Length = 161

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 35 TIMCRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 83


>gi|83409915|emb|CAI64336.1| heterodisulfide reductase like protein, subunit A [uncultured
            archaeon]
          Length = 1024

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 4    VVTENCILCKHTDCVEVCPVDCF------YEGENFLAI------HPDECIDCGVCEPECP 51
            V  E CI C    C  VCP           E E  + I      +P  C  CG C  ECP
Sbjct: 942  VDPELCIGCG--RCTLVCPYKAPELKEVTVETEEIVYITKKSEINPAVCKGCGSCAAECP 999

Query: 52   VDAI 55
              AI
Sbjct: 1000 TGAI 1003



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 28/92 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECI-- 41
           TYV  + C  C+   CV  CPV   D + EG                    I  + C+  
Sbjct: 116 TYVDYDKCTACEL--CVSKCPVKVPDEYNEGQNNRKAIYLAFPQAVPRVFTIDAEHCLYL 173

Query: 42  ---DCGVCEPECPVDAIKPDTEPGLELWLKIN 70
               CG C+  C  DAI  +        + IN
Sbjct: 174 TKGKCGNCQKACENDAINFEDTDKE---IDIN 202



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIK 56
            N   + P+ CI CG C   CP  A +
Sbjct: 937 GNVSVVDPELCIGCGRCTLVCPYKAPE 963


>gi|257454853|ref|ZP_05620104.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
 gi|257447786|gb|EEV22778.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
           E+CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I+
Sbjct: 114 EDCIGC--TKCIPACPVDAIIGSGKRMHTIFTDLCTGCELCLPPCPVDCIE 162



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  ++CI C  C P CPVDAI
Sbjct: 111 IREEDCIGCTKCIPACPVDAI 131


>gi|261340825|ref|ZP_05968683.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317251|gb|EFC56189.1| dimethylsulfoxide reductase, chain B [Enterobacter cancerogenus
           ATCC 35316]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPICTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|325958243|ref|YP_004289709.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanobacterium sp. AL-21]
 gi|325329675|gb|ADZ08737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanobacterium sp. AL-21]
          Length = 143

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 5  VTENCILCKH--TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          V  +C+ C      C+ VCP D   E +  + I  D CI CG+C   CP+ AI  D 
Sbjct: 32 VPVHCLHCAKDRAPCMTVCPEDAIVEIDGAIVIMEDSCIGCGLCRDSCPIGAIHMDE 88



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID--CGVCEPECPVDAIKPDTEP 61
           ++CI C    C + CP+   +  E  +A   + CID     C   CP DA+K D+E 
Sbjct: 67  DSCIGCGL--CRDSCPIGAIHMDEYGIAKKCNLCIDKETPACVLTCPKDALKVDSED 121


>gi|295097939|emb|CBK87029.1| DMSO reductase, iron-sulfur subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|242238712|ref|YP_002986893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242130769|gb|ACS85071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 180

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIQCRHCEDAPCANVCPNGAIVRAGDHIKVQQEKCIGCKTCVVACPYGA 102


>gi|213854524|ref|ZP_03382764.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 327

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 162


>gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
 gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           ++  E C  C  T C  +CPV+    G+  +   I P  CI CG C   C   AI 
Sbjct: 507 FINPEKCKGC--TLCARMCPVNAIT-GDKKVPHVIDPQTCIRCGSCIERCKFGAIY 559



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
              I+P++C  C +C   CPV+AI  D +   
Sbjct: 505 QYFINPEKCKGCTLCARMCPVNAITGDKKVPH 536


>gi|93005680|ref|YP_580117.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
 gi|92393358|gb|ABE74633.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
          Length = 280

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 123 DDCIGC--TKCIPACPVDAIVGTGKHMHTIFTDLCTGCELCIAPCPVDCI 170



 Score = 41.7 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  D+CI C  C P CPVDAI
Sbjct: 119 VIREDDCIGCTKCIPACPVDAI 140


>gi|327251648|gb|EGE63334.1| hypothetical protein ECSTEC7V_3499 [Escherichia coli STEC_7v]
          Length = 644

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|327311101|ref|YP_004337998.1| Fe-S-cluster-containing hydrogenase components 1 [Thermoproteus
           uzoniensis 768-20]
 gi|326947580|gb|AEA12686.1| Fe-S-cluster-containing hydrogenase components 1 [Thermoproteus
           uzoniensis 768-20]
          Length = 188

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP    Y+ ++ L  I+ D CI C  C   CP DA
Sbjct: 63  CQHCENPPCVTVCPTGASYKDKDGLVKINYDLCIGCRYCMVACPYDA 109


>gi|254037930|ref|ZP_04871988.1| aegA [Escherichia sp. 1_1_43]
 gi|226839554|gb|EEH71575.1| aegA [Escherichia sp. 1_1_43]
          Length = 644

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|224373083|ref|YP_002607455.1| iron-sulfur cluster-binding protein CooF [Nautilia profundicola
           AmH]
 gi|223589422|gb|ACM93158.1| iron-sulfur cluster-binding protein CooF [Nautilia profundicola
           AmH]
          Length = 172

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   CV  CP+D      N++ I+ D+CI C  C   CP  AI
Sbjct: 63  CMQCEDAPCVNACPIDIIKYENNYVKIYEDDCIGCRSCAMVCPFGAI 109


>gi|297620125|ref|YP_003708230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379102|gb|ADI37257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 419

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI-KP 57
           Y++ E+ CI C    C + C V+         N   I+PD C+ CG+C  ECPVDAI  P
Sbjct: 312 YIINEDKCIGC--RICSKACNVENAISISSETNMPYINPDYCVRCGLCHRECPVDAIDFP 369

Query: 58  DTEPGLEL 65
           +T    +L
Sbjct: 370 ETSESEKL 377



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTE 60
           Y++ +  C+ C    C  +CPV+      N   I  ++C+ C  C   CPV+ AIK   E
Sbjct: 121 YIIDDELCVKCD--SCRRICPVNAITYENNVYRIKSNDCVGCNRCATACPVENAIKSYNE 178

Query: 61  PGLELWLKINSE 72
             L    KIN  
Sbjct: 179 YELSE--KINRA 188



 Score = 46.3 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDECIDCGVCEPECPVD-AIKP 57
            C+ C    C+EVCP      G         EN   I+ D+CI C +C   C V+ AI  
Sbjct: 280 ECVKCGL--CIEVCPTTAIRTGKVVKKTLNTENCYIINEDKCIGCRICSKACNVENAISI 337

Query: 58  DTEPGL 63
            +E  +
Sbjct: 338 SSETNM 343



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 17/66 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------------NFLAIHPDECIDCGVCEPECPV 52
           +CI C   +CVE CP     +G                N   I  + C+ C  C   CPV
Sbjct: 83  SCIACG--NCVETCPTGVLEQGTLRKEAKQYIWTVPKINNYIIDDELCVKCDSCRRICPV 140

Query: 53  DAIKPD 58
           +AI  +
Sbjct: 141 NAITYE 146



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           +NCI C    C + CP +          G+N     P  CI CG C   CP   ++  T 
Sbjct: 47  DNCISCNG--CYQSCPSEAIEMQYSEEYGKNLPVFFPGSCIACGNCVETCPTGVLEQGTL 104

Query: 60  EPGLELWL 67
               + ++
Sbjct: 105 RKEAKQYI 112



 Score = 44.8 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V+  CI C   +CV+VCP        N L     EC+ CG+C   CP  AI+
Sbjct: 252 IVSSLCIKCN--NCVDVCPGKIDLNELNVL-----ECVKCGLCIEVCPTTAIR 297


>gi|125556583|gb|EAZ02189.1| hypothetical protein OsI_24281 [Oryza sativa Indica Group]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|189424747|ref|YP_001951924.1| cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
 gi|189421006|gb|ACD95404.1| Cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
          Length = 292

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-KPD 58
           ++C  C    C++ C  D     +    I P  C  CGVC   CPV AI  PD
Sbjct: 71  QDCTGCG--ICMDSCRFDAIRREDISYRIDPVACEGCGVCYRLCPVKAIDFPD 121



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           F  G     I   +C  CG+C   C  DAI+ + 
Sbjct: 59 AFMSGHE-AVIRQQDCTGCGICMDSCRFDAIRRED 92


>gi|317490387|ref|ZP_07948871.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316910522|gb|EFV32147.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 176

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C  C +  C  VCP    ++ E  L      +CI CG C   CP  A   D  
Sbjct: 28 AYHVSISCNHCNNPVCTRVCPTGAMHKDELGLVWPDATKCIGCGYCTMACPYHAPHIDAR 87


>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
 gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
          Length = 599

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+ E  C  C    C + CP D    E +    I   +C+ CG C   CP +AI
Sbjct: 544 YVIDEEKCKGCG--ICAKKCPGDAITGEKKKPHVIDAAKCVKCGACIEACPFNAI 596



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I  ++C  CG+C  +CP DAI  + +   
Sbjct: 544 YVIDEEKCKGCGICAKKCPGDAITGEKKKPH 574


>gi|262375913|ref|ZP_06069144.1| electron transport complex protein [Acinetobacter lwoffii SH145]
 gi|262309007|gb|EEY90139.1| electron transport complex protein [Acinetobacter lwoffii SH145]
          Length = 263

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I  D     + 
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI--DLVEDQQP 145



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           PV      +     I  DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRIKAVIREDECIGCTKCISACPVDAI 107


>gi|197119565|ref|YP_002139992.1| oxidoreductase iron-sulfur cluster-binding subunit [Geobacter
           bemidjiensis Bem]
 gi|197088925|gb|ACH40196.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           bemidjiensis Bem]
          Length = 260

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+ E+ +  +    CI CG C   CP  
Sbjct: 126 AFFVPKLCNQCDNPPCVQVCPVGATYQTEDGVVLVDRSWCIGCGYCIMGCPYG 178


>gi|157963673|ref|YP_001503707.1| dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
 gi|157848673|gb|ABV89172.1| Dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
          Length = 205

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y  + +C  C    C   CP    +   E+ L  IH D CI C  C   CP DA + D 
Sbjct: 59  AYYTSISCNHCNTPACTTACPTGAMHKRAEDGLVMIHDDICIGCSSCSQACPYDAPQLDE 118


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C  C  + C  +CPV     E  +   I   +CI CG C   CP  AIK 
Sbjct: 574 EACKGC--SKCSRICPVGAISGEIRHPFTIDTQKCIKCGACIANCPFHAIKE 623



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 7/54 (12%)

Query: 11  LCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             +   C    C            AI P+ C  C  C   CPV AI  +     
Sbjct: 552 HVRDKKCPTHTCKAMSI------YAIDPEACKGCSKCSRICPVGAISGEIRHPF 599


>gi|298507396|gb|ADI86119.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
          regulator, FehydlgC and FeS domain-containing
          [Geobacter sulfurreducens KN400]
          Length = 763

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1  MTYVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  ++T  E C  C    CV  CPV      + +  I  D CI CG C   CP  A
Sbjct: 1  MEPIITDKEKCRKC--YCCVRSCPVKAIKVEKRYTEIIFDRCIGCGNCLSNCPQRA 54


>gi|331664458|ref|ZP_08365364.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
 gi|331058389|gb|EGI30370.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
          Length = 644

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|226327802|ref|ZP_03803320.1| hypothetical protein PROPEN_01679 [Proteus penneri ATCC 35198]
 gi|225203506|gb|EEG85860.1| hypothetical protein PROPEN_01679 [Proteus penneri ATCC 35198]
          Length = 247

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV VCPV   F   +  + +  + C+ C  C   CP DA
Sbjct: 100 CNHCDEPPCVPVCPVQATFQRKDGIVVVDNERCVGCAYCVQACPYDA 146


>gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 310

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +C+ C    C E+CP +  +  +N   I+ ++C  C +C+  CPV+AI+
Sbjct: 63  SCMDCGL--CQEICPENAIFTEQNSTQINQEKCKKCSICQESCPVNAIE 109



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 11 LCKHTDCVEVCPVDCFY----EG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + T  ++ CP+ C +    EG   E+ L IH + C+DCG+C+  CP +AI  +     
Sbjct: 28 GIRTTVFIKGCPLRCEWCHNPEGLAFESQLLIHHNSCMDCGLCQEICPENAIFTEQNSTQ 87


>gi|158522074|ref|YP_001529944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510900|gb|ABW67867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 385

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           V+ E+ C  C    CVE CPVD    G    A+  ++ CI CG+C   CP  AI
Sbjct: 316 VIDEDTCTGCG--ICVERCPVDAIVLGSEGTAVREEKYCIGCGICARFCPEGAI 367



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 9   CILCKHTDCVE--------VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  CK   C +          P+           I  D C  CG+C   CPVDAI   +E
Sbjct: 287 CNCCKD--CCDTFTLWRNGATPM--INSTNYLSVIDEDTCTGCGICVERCPVDAIVLGSE 342


>gi|134045265|ref|YP_001096751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662890|gb|ABO34536.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 132

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    CV  CPV      + F + +  DECI C  C   CPV+AIK
Sbjct: 80  EKCIDCG--ACVVHCPVGAISVDDEFKILLDEDECIGCKNCAKICPVNAIK 128



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             ++CIDCG C   CPV AI  D E
Sbjct: 78  DDEKCIDCGACVVHCPVGAISVDDE 102


>gi|157369310|ref|YP_001477299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157321074|gb|ABV40171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 244

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   F   +  + +    C+ C  C   CP +A  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQRQDGIVVVDNTRCVGCAYCVQACPYEARFINHETQTADK 158


>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
 gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
          Length = 626

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C    C++ CP+D           I  ++CI CG C   CP  AI+ +
Sbjct: 576 ELCKGCG--KCMKQCPMDAISGQIRMPHVIDTEKCIKCGACWGCCPFGAIREE 626



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 14/55 (25%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +VV ++C  C                 +  L I P+ C  CG C  +CP+DAI
Sbjct: 553 LAHVVDKHCPHCNGR--------------KKELQIDPELCKGCGKCMKQCPMDAI 593



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYE 28
           M +V+ TE CI C    C   CP     E
Sbjct: 599 MPHVIDTEKCIKCG--ACWGCCPFGAIRE 625


>gi|323978822|gb|EGB73903.1| glutamate synthase [Escherichia coli TW10509]
          Length = 641

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 113


>gi|265751809|ref|ZP_06087602.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|263236601|gb|EEZ22071.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
          Length = 309

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CEPECP  AI+    P  +  +
Sbjct: 223 SCIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCEPECPKGAIQAINFPPRKPKV 280

Query: 68  K 68
           +
Sbjct: 281 E 281



 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVEVC  D  +         +  ++C  CG C   CP   I+
Sbjct: 145 CLGCGD--CVEVCQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKIIE 192


>gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 623

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 1   MTYVV--TENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           + Y+V   E C  C  + C  +CPV    EG+      I+  +CI CG C   CP  AIK
Sbjct: 565 LAYIVIEKEKCKGC--SKCARICPVQAI-EGKIKEPYTINQSKCIKCGACLEACPFAAIK 621

Query: 57  P 57
            
Sbjct: 622 E 622


>gi|238753089|ref|ZP_04614541.1| Hydrogenase-2 operon protein hybA [Yersinia rohdei ATCC 43380]
 gi|238708700|gb|EEQ00966.1| Hydrogenase-2 operon protein hybA [Yersinia rohdei ATCC 43380]
          Length = 346

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D +
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYDYD 170


>gi|224368549|ref|YP_002602712.1| iron-sulfur cluster-binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691265|gb|ACN14548.1| iron-sulfur cluster-binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 422

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
           T  C+ C+   C+  CPV    +G++ +  I+P  C  CG+C   CP  A  I PD
Sbjct: 73  TVLCLHCQEPLCIPACPVRAIEKGKDGIVRINPALCTGCGICALACPEAAPMITPD 128


>gi|188586494|ref|YP_001918039.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351181|gb|ACB85451.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 410

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          ++T+ C  C    CV+ CP +     ++   ++ + C +CG C   C   AI  + E 
Sbjct: 5  ILTDKCKGC--ALCVDACPFEAIEMKDDIAVLN-ESCTNCGACIESCKFGAIIKEEED 59


>gi|150401708|ref|YP_001325474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014411|gb|ABR56862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 138

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C+ C+   C+ +CP        + + +  DECI C +C   CP  A++ D 
Sbjct: 35 CMHCEDAPCLNICPEGAIKRINDKVVVISDECIGCELCVSACPFGAMRMDL 85


>gi|28871290|ref|NP_793909.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970874|ref|ZP_03398997.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301383775|ref|ZP_07232193.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059917|ref|ZP_07251458.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130516|ref|ZP_07256506.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854540|gb|AAO57604.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924397|gb|EEB57969.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 291

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+   
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-DECTGCDLCVAPCPVDCIEMHA 140

Query: 60  EP 61
            P
Sbjct: 141 LP 142



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEM 138


>gi|127511541|ref|YP_001092738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636836|gb|ABO22479.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 190

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           +C  C++  CV VCP    Y G++ L  I  D+C+ C  C   CP     I P+T+   +
Sbjct: 59  SCQQCENAPCVTVCPTGAAYVGDDGLVSIKEDKCVGCMYCVAACPYKVRFINPETKAADK 118


>gi|323966687|gb|EGB62119.1| glutamate synthase [Escherichia coli M863]
          Length = 639

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|284922835|emb|CBG35924.1| putative oxidoreductase [Escherichia coli 042]
          Length = 639

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|220910573|ref|YP_002485884.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219867184|gb|ACL47523.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 543

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M Y ++++C+ C    C   CP       +   +I P+ C +C G      C   CP+  
Sbjct: 1  MAYKISDSCLACD--SCRPQCPTGAITVEDGRYSIDPETCNNCTGYFPEPQCVISCPISV 58

Query: 55 IKP 57
            P
Sbjct: 59 PSP 61



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
                D C+ C  C P+CP  AI  + 
Sbjct: 1  MAYKISDSCLACDSCRPQCPTGAITVED 28


>gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 488

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+  + C+ C  T C ++CPV+C   + +    I   +CI CG C+ +C  +AI
Sbjct: 433 FVILKDKCVGC--TLCAKICPVECISGQVKQPHVIDQSKCIKCGACQDKCKFEAI 485



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I  D+C+ C +C   CPV+ I
Sbjct: 431 RQFVILKDKCVGCTLCAKICPVECI 455


>gi|39998452|ref|NP_954403.1| sigma-54 dependent transcriptional regulator, Fis family
          [Geobacter sulfurreducens PCA]
 gi|39985399|gb|AAR36753.1| sigma-54 dependent transcriptional regulator, Fis family
          [Geobacter sulfurreducens PCA]
          Length = 763

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1  MTYVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  ++T  E C  C    CV  CPV      + +  I  D CI CG C   CP  A
Sbjct: 1  MEPIITDKEKCRKC--YCCVRSCPVKAIKVEKRYTEIIFDRCIGCGNCLSNCPQRA 54


>gi|308274447|emb|CBX31046.1| hypothetical protein N47_E45580 [uncultured Desulfobacterium sp.]
          Length = 1415

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             YV  E C  C    CV  CP        E    I    C  CGVC  ECP  AI+ +  
Sbjct: 1341 AYVEAEKCASCL--ICVRSCPYGVPKINAEGVSEIDVALCHGCGVCAAECPAKAIELNWY 1398

Query: 61   PGLE 64
               +
Sbjct: 1399 EDDQ 1402


>gi|296134443|ref|YP_003641690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296033021|gb|ADG83789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 190

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C + CP     + +  + I+   C+ C VC   CP  AI   T P  E 
Sbjct: 64  CRQCEDAPCAQACPTGAIRQEDGLVKINEQNCVGCKVCSMVCPFGAIVVTTVPNAEP 120


>gi|218701595|ref|YP_002409224.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218371581|emb|CAR19420.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli IAI39]
          Length = 639

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|213649211|ref|ZP_03379264.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 199

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|307155160|ref|YP_003890544.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 7822]
 gi|306985388|gb|ADN17269.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7822]
          Length = 75

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV+ CPV C + G        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTETCEGV--ADCVKACPVACIHPGPGKNIKGTDWFWIDFATCIDCGICLSVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P  + 
Sbjct: 59 EGAIIPEERPEYQK 72


>gi|219849153|ref|YP_002463586.1| cyclic nucleotide-binding protein [Chloroflexus aggregans DSM 9485]
 gi|219543412|gb|ACL25150.1| cyclic nucleotide-binding protein [Chloroflexus aggregans DSM 9485]
          Length = 477

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)

Query: 5   VTENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V ++C  C    +CVE CP D     +       + C  CG C   CP DA++       
Sbjct: 353 VLDSCRQCSVGAECVEACPEDAIERVDTGALRITNRCTGCGECVTACPYDAVQTVPRAKY 412

Query: 64  E---LWLKINSEYATQWPNITTKKESLP 88
           +   LW     +   +W         L 
Sbjct: 413 QTGPLW-----DLFRRWQQRIRPTIPLA 435


>gi|121594763|ref|YP_986659.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|222110623|ref|YP_002552887.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|120606843|gb|ABM42583.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
 gi|221730067|gb|ACM32887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 260

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   F   +  + +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 116 CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 174


>gi|62181096|ref|YP_217513.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62128729|gb|AAX66432.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715583|gb|EFZ07154.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|319940782|ref|ZP_08015121.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805664|gb|EFW02445.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
          Length = 197

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           Y +   C  CK   CV+VCP    Y  ++  + ++ ++CI C +C   CP  A
Sbjct: 53  YFLPSICQCCKDAPCVKVCPTGATYRTDDGQILVNKEKCIGCKMCMAACPYGA 105


>gi|218779911|ref|YP_002431229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761295|gb|ACL03761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI--KPD 58
             V  E C  C    C E C V      ++ +  +  D CI CG+C   CP +AI  KP 
Sbjct: 271 AVVDAELCAACGD--CEERCQVLAITYDDDGIAVVDEDRCIGCGLCVTTCPTEAITLKPV 328

Query: 59  TEPGLE 64
           +E   +
Sbjct: 329 SEDQWK 334



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                +   +  + C  CG CE  C V AI  D +
Sbjct: 264 IVLTNHQAVVDAELCAACGDCEERCQVLAITYDDD 298


>gi|16765849|ref|NP_461464.1| anaerobic dimethylsulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167549449|ref|ZP_02343208.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991839|ref|ZP_02572938.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232098|ref|ZP_02657156.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238267|ref|ZP_02663325.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168261431|ref|ZP_02683404.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168821495|ref|ZP_02833495.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194472364|ref|ZP_03078348.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736835|ref|YP_002115591.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197262818|ref|ZP_03162892.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200387777|ref|ZP_03214389.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|224582934|ref|YP_002636732.1| anaerobic dimethylsulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912649|ref|ZP_04656486.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16421073|gb|AAL21423.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194458728|gb|EDX47567.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712337|gb|ACF91558.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197241073|gb|EDY23693.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288856|gb|EDY28229.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604875|gb|EDZ03420.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205325458|gb|EDZ13297.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329844|gb|EDZ16608.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333568|gb|EDZ20332.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341968|gb|EDZ28732.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349653|gb|EDZ36284.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224467461|gb|ACN45291.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261247725|emb|CBG25553.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994648|gb|ACY89533.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159078|emb|CBW18592.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913516|dbj|BAJ37490.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087025|emb|CBY96794.1| Formate dehydrogenase, iron-sulfur subunit Formate dehydrogenase
           subunit beta; FDH subunit beta [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222770|gb|EFX47841.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323130857|gb|ADX18287.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989456|gb|AEF08439.1| putative anaerobic dimethylsulfoxide reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|86139798|ref|ZP_01058364.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823427|gb|EAQ43636.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 268

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEG 143


>gi|240102884|ref|YP_002959193.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239910438|gb|ACS33329.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 174

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          NC  C    C+ VCP    Y  E+    IH D+CI C  C   CP      
Sbjct: 47 NCKHCDDAPCLRVCPTHAIYRDEDGAVRIHEDKCIGCLACLQVCPYGVPFY 97


>gi|320162471|ref|YP_004175696.1| ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319996325|dbj|BAJ65096.1| ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 57

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          MT+V++ ++CI C    C   CP    Y    +  +   +C DCG C   CP  AI P
Sbjct: 1  MTHVISKDDCIQCG--ACETECPEGAIYMDGEYYVVDEAKCKDCGSCVDVCPTGAIGP 56



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTE 60
           I  D+CI CG CE ECP  AI  D E
Sbjct: 4  VISKDDCIQCGACETECPEGAIYMDGE 30


>gi|291086291|ref|ZP_06355299.2| electron transport protein HydN [Citrobacter youngae ATCC 29220]
 gi|291068768|gb|EFE06877.1| electron transport protein HydN [Citrobacter youngae ATCC 29220]
          Length = 195

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 72  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 124


>gi|289192303|ref|YP_003458244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938753|gb|ADC69508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 391

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVTE C+ C    CV  CPV      +    I   +CI C +C   CP +AI 
Sbjct: 134 VVTEACVGCG--ICVPECPVSAITLEDGKAVIDKSKCIYCSICAQTCPWNAIF 184



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C    CVEVCP +    + EN + I P  C  C +C   CPV+A++ + +
Sbjct: 202 VNAEKCIYCL--KCVEVCPGNMIKVDKENMIVIPPKSCPACKLCVNTCPVNALELEVK 257



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP +     E+   +    CI CG C   CP  A+K
Sbjct: 280 KKCASVCPTEAIVVDEDKKEV--RMCIVCGACTVACPTGALK 319


>gi|282864084|ref|ZP_06273141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282561162|gb|EFB66707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 302

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CGVC P CP   I+ 
Sbjct: 115 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGVCVPACPYGVIEQ 167


>gi|217971445|ref|YP_002356196.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496580|gb|ACK44773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 553

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYLNKVVSRF 257

Query: 71  SEYATQWPNI 80
            E+A   P I
Sbjct: 258 REHAQTAPVI 267



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|326561676|gb|EGE12013.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 103P14B1]
          Length = 275

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 117 DCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I   +CI C  C P CPVDAI
Sbjct: 113 IQEADCIGCTKCIPACPVDAI 133



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  ++T+ C  C+   C+  CPVDC 
Sbjct: 140 MHSIITDLCTGCEL--CLAPCPVDCI 163


>gi|302339991|ref|YP_003805197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637176|gb|ADK82603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 292

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKP 57
           CI CK   C+  CPVD F   +  + +H D   CI C  C   CP  AI+ 
Sbjct: 216 CIKCK--KCISACPVDMFTYADGEIVMHRDNSSCILCAECFHTCPAGAIEH 264



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 35  IHPDECIDCGVCEPECPVD 53
           I   +CI C  C   CPVD
Sbjct: 211 IDAAKCIKCKKCISACPVD 229


>gi|300871807|ref|YP_003786680.1| ferredoxin, 4Fe-4S [Brachyspira pilosicoli 95/1000]
 gi|300689508|gb|ADK32179.1| ferredoxin, 4Fe-4S [Brachyspira pilosicoli 95/1000]
          Length = 55

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M  V+  +C+ C    C+  C  D   EG +   I PD+C DCG CE  CP +AI  
Sbjct: 1  MPRVINNDCVACG--SCLPECAFDAISEG-DIYKIDPDKCTDCGACEAVCPSNAIHQ 54


>gi|255658499|ref|ZP_05403908.1| formate dehydrogenase-O, iron-sulfur subunit [Mitsuokella multacida
           DSM 20544]
 gi|260849298|gb|EEX69305.1| formate dehydrogenase-O, iron-sulfur subunit [Mitsuokella multacida
           DSM 20544]
          Length = 270

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            V   C+ C    C + CP +         + I+ ++C+ CG C   CP D  K
Sbjct: 72  FVKTQCMHCGDPACAKGCPEEAIDKLASGAVVINEEKCVGCGYCVANCPFDVPK 125


>gi|204929695|ref|ZP_03220769.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321414|gb|EDZ06614.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|198244744|ref|YP_002216593.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353628|ref|YP_002227429.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857937|ref|YP_002244588.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197939260|gb|ACH76593.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205273409|emb|CAR38384.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206709740|emb|CAR34092.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326624349|gb|EGE30694.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628728|gb|EGE35071.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 209

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 130

Query: 60  EPGL 63
           + G 
Sbjct: 131 QTGQ 134


>gi|150005462|ref|YP_001300206.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|149933886|gb|ABR40584.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 427

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFY---EGENFLA--IHPDECIDCGVCEPECP 51
          ++C  C  + CV+ CP  C     + E FL   +   +CIDCG+CE  CP
Sbjct: 8  QSCCGC--SSCVQKCPRQCISLHEDTEGFLYPVVDKGDCIDCGLCEKVCP 55


>gi|28209953|ref|NP_780897.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
 gi|28202388|gb|AAO34834.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
          Length = 448

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C       C + CPV+  +   N   + I+ + C+DCG+C   CP  +I    E
Sbjct: 85  CAKDGDIICEKSCPVNAIFRDPNDNNIYINDELCLDCGLCVRNCPSGSILDKKE 138


>gi|320450082|ref|YP_004202178.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermus scotoductus SA-01]
 gi|320150251|gb|ADW21629.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermus scotoductus SA-01]
          Length = 258

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C H  CV  CP       E  +  +    CI C  C   CP +A+  D 
Sbjct: 77  SCMHCTHAPCVASCPTGAMAHREGGVVTVDEKTCIGCRSCVQACPYEAVHFDE 129



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 20/84 (23%)

Query: 1   MTY----VVTEN---CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC---------G 44
           M +    VVT +   CI C    CV+ CP +  +  E    +H  +C  C          
Sbjct: 95  MAHREGGVVTVDEKTCIGC--RSCVQACPYEAVHFDEARGVVH--KCTMCYDRISNGDQP 150

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
            C   CP DA+   T   +    +
Sbjct: 151 ACVKACPTDALTFGTYQEIRAMAE 174


>gi|319955037|ref|YP_004166304.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
 gi|319423697|gb|ADV50806.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
          Length = 378

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C +  CVEVCPV   + E +  + I  D C+ C  C   CP D
Sbjct: 234 CFHCDNPPCVEVCPVQATWKEEDGLVVIDYDWCVGCRYCMAACPYD 279


>gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
 gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
          Length = 632

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           +V+ E+ C  C  T C + CPV     GE      I  + CI CG C   C   AI+
Sbjct: 574 FVIDESLCKGC--TACAKACPVGAIS-GEKKAPHTIDTERCIRCGACMATCRFGAIR 627



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CPV       +F  I    C  C  C   CPV AI  + +    +  +
Sbjct: 563 CPVGACKALSDF-VIDESLCKGCTACAKACPVGAISGEKKAPHTIDTE 609


>gi|295107352|emb|CBL04895.1| Uncharacterized conserved protein [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 208

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           + V++ C  C    C   CP  C     +    I    C+ CG C   CP DAI P
Sbjct: 154 FTVSDACTGCG--ACFAACPQGCIAPRPDGRAFIEQQACLHCGRCREVCPSDAIAP 207



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           D C  CG C   CP   I P   P    +++
Sbjct: 158 DACTGCGACFAACPQGCIAP--RPDGRAFIE 186


>gi|289207331|ref|YP_003459397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288942962|gb|ADC70661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 231

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  +C+ C++ DCV VCP    +   E+ +  +  D+C+ C  C   CP  A + D E G
Sbjct: 68  IPMSCMHCQYADCVNVCPTGASYKRPEDGIVLVDQDKCMGCNYCAWACPYGARELDREDG 127



 Score = 33.6 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 32 FLAIHPDECIDCGVCEPEC 50
           L I  D C+ C  C   C
Sbjct: 4  GLVIDMDTCVGCHACAVAC 22


>gi|78044780|ref|YP_361471.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996895|gb|ABB15794.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 302

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + ENC  C    C ++CPV+     +  +++  + CI CG C   CP +A
Sbjct: 173 IKENCTACGL--CTKICPVNAITLNQQEISVDYEVCIGCGDCVKACPFEA 220



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYEGENFLAI--------HPDECIDCGVCEPECPVDAI 55
           +  C  +C    EN L I          + C  CG+C   CPV+AI
Sbjct: 147 ITGCANNCLKAEENDLGIKGVCRPNWIKENCTACGLCTKICPVNAI 192


>gi|291086580|ref|ZP_06356206.2| hydrogenase-2 operon protein HybA [Citrobacter youngae ATCC 29220]
 gi|291067843|gb|EFE05952.1| hydrogenase-2 operon protein HybA [Citrobacter youngae ATCC 29220]
          Length = 289

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 124


>gi|167770144|ref|ZP_02442197.1| hypothetical protein ANACOL_01487 [Anaerotruncus colihominis DSM
          17241]
 gi|167667466|gb|EDS11596.1| hypothetical protein ANACOL_01487 [Anaerotruncus colihominis DSM
          17241]
          Length = 564

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      +N   I P+ECI CG C   CP +A
Sbjct: 11 NCKNC--HKCIRSCPVKSIRFSDNQAKIIPEECILCGRCVVVCPQNA 55


>gi|254491482|ref|ZP_05104661.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224462960|gb|EEF79230.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 517

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           + C LC    CV VCPV    +G +   ++   D C+ CG+C+  CP DAI
Sbjct: 393 QACTLC--MSCVSVCPVGAVVDGVDKPQLNFIEDLCVQCGICDTACPEDAI 441



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 15  TDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK---PDTEPGLELWLKIN 70
           T+C++ CP       G + + ++P  C  CG C   CP  AI    P  +  +  + ++ 
Sbjct: 161 TNCIDACPAGAVESSGWDLINVNPSLCQGCGSCTVVCPSGAISYALPTLDISINRFREML 220

Query: 71  SEYATQ 76
             Y  Q
Sbjct: 221 QSYFEQ 226



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           + +    C  C  C   CPV A+    +     +++
Sbjct: 388 IEVDKQACTLCMSCVSVCPVGAVVDGVDKPQLNFIE 423


>gi|254173765|ref|ZP_04880437.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
 gi|214032457|gb|EEB73287.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
          Length = 635

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V+ + C  CK    +  CP   +    N + I    C  CGVC   CP DAIK  +E  
Sbjct: 574 VIEDRCTGCKACILLTGCPALVYDPETNKVRIDGLLCTGCGVCNQTCPFDAIKFPSELE 632


>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 632

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C  + C   CP +    E      I  D+CI CG+C  +C   AI+
Sbjct: 578 IIPEKCKSC--SLCARSCPNNAISGERGKPYVIDQDKCIKCGLCVTKCKFGAIE 629



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I P++C  C +C   CP +AI  +
Sbjct: 565 CPSG-MCTAFKKYIIIPEKCKSCSLCARSCPNNAISGE 601


>gi|326573425|gb|EGE23393.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 101P30B1]
          Length = 275

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 117 DCIGC--TKCIPACPVDAIVGTAKHMHSIITDLCTGCELCLAPCPVDCI 163



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I   +CI C  C P CPVDAI
Sbjct: 113 IQEADCIGCTKCIPACPVDAI 133



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  ++T+ C  C+   C+  CPVDC 
Sbjct: 140 MHSIITDLCTGCEL--CLAPCPVDCI 163


>gi|238755284|ref|ZP_04616628.1| Electron transport protein hydN [Yersinia ruckeri ATCC 29473]
 gi|238706518|gb|EEP98891.1| Electron transport protein hydN [Yersinia ruckeri ATCC 29473]
          Length = 181

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP       ++ + +  + CI C  C   CP  A++  T+P    
Sbjct: 58  CRQCEDAPCANVCPNGAIARIDDHIQVMQERCIGCKTCVVACPYGAMEVVTKPIFRQ 114


>gi|298528790|ref|ZP_07016194.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512442|gb|EFI36344.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 374

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV+  CI C    C   CPV       +   +  D+CI+C  C+  CP DAI+
Sbjct: 308 VVSSRCISCG--ICAGHCPVGAMSMSSSGPVLDRDKCINCYCCQEMCPEDAIR 358


>gi|291288074|ref|YP_003504890.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885234|gb|ADD68934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 204

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            + V+  C  C    C+ +CP + +   E +  +    ++CI C  C+  CP  A   D 
Sbjct: 61  AFYVSMACNQCDDPACLNICPANAYTKRESDGIVVYDAEKCISCFGCQQVCPYTAPVYDY 120

Query: 60  EPGL 63
           E G 
Sbjct: 121 EAGH 124


>gi|224582445|ref|YP_002636243.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466972|gb|ACN44802.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 179

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 50  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 103


>gi|92118585|ref|YP_578314.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801479|gb|ABE63854.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 674

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C    C+++CP        + +AI+ + C  CG C   CP  A      P  
Sbjct: 282 VGC--HRCLDLCPTSAITPDGDHVAINAEICAGCGQCAAACPTGAASYALPPAD 333



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 5/101 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV  CP    Y+      +    D C+ CG+C+  CP   IK   + 
Sbjct: 516 VDVEGCTLCL--SCVSACPTGALYDDPERPVLRFTEDACVQCGLCQATCPEKVIKLVPQI 573

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKM-DGVKQKYE 101
                         + P +  +           D V  K E
Sbjct: 574 DFRAATAPARTLKEEEPALCVRCHKPFGVKSTIDRVAAKLE 614



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 18  VEVCPVDCFY--EGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           V   PVD     +G  F  L +  + C  C  C   CP  A+  D E  +  + +
Sbjct: 495 VAPAPVDVIALPDGAPFGTLEVDVEGCTLCLSCVSACPTGALYDDPERPVLRFTE 549


>gi|150018760|ref|YP_001311014.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149905225|gb|ABR36058.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 271

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
          V    C+ C    C  VCP       EN  +AIHPD CI CG C   CP  +I
Sbjct: 6  VNQSTCVKCGL--CSNVCPSGVLSMNENGPIAIHPDNCISCGHCVAICPSSSI 56


>gi|330829846|ref|YP_004392798.1| hydrogenase 2 protein [Aeromonas veronii B565]
 gi|328804982|gb|AEB50181.1| Hydrogenase 2 protein [Aeromonas veronii B565]
          Length = 348

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   P  C  C  C   CP D  K D +  
Sbjct: 109 IKKQCMHCVDPNCVSVCPVQALKKDPKTGIVHYDPSVCTGCRYCMVGCPFDVPKYDYDNP 168

Query: 63  L 63
           L
Sbjct: 169 L 169


>gi|289830114|ref|ZP_06547545.1| putative dimethyl sulfoxide reductase subunit [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 131

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 10 AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 66


>gi|224584620|ref|YP_002638418.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469147|gb|ACN46977.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323131194|gb|ADX18624.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 195

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 72  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 124


>gi|239908169|ref|YP_002954910.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798035|dbj|BAH77024.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1]
          Length = 210

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    C E CP            I+   C+ CG C   CP  AI
Sbjct: 88  VDPEACHGCG--ACAEACPDAAIQITAGKAVINQGTCLGCGACARVCPSRAI 137



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 8/47 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  CP  C                ++ P+ C  CG C   CP  AI+
Sbjct: 63  VSACPNACVRPQVADLGLIAVREASVDPEACHGCGACAEACPDAAIQ 109


>gi|206889393|ref|YP_002247876.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741331|gb|ACI20388.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 596

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 22/53 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV E C  CK       CP   F E +    I    C+ CG C   CP  AI+
Sbjct: 542 VVKELCKGCKLCLTEFECPAIVFKEEDVKAEIDHTICVGCGCCVHICPTKAIR 594


>gi|119720719|ref|YP_921214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525839|gb|ABL79211.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 131

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C  VCP +     E   + ++P +C+ CG C   CP+ A++ D E
Sbjct: 53  CRACENPPCAAVCPTNALVRREGGGVVLNPSKCVGCGNCARACPIGAVQWDYE 105



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C   +C   CP+       ++ ++ P  C+ CG C   CP  
Sbjct: 85  CVGCG--NCARACPIGAVQ--WDYESMKPIICVHCGYCVNYCPYG 125


>gi|328947025|ref|YP_004364362.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489]
 gi|328447349|gb|AEB13065.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489]
          Length = 492

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+VT  C  C    C+  CP       +    I    CI+CG C   CP  +I
Sbjct: 112 YMVTNACQGCYARPCMVNCPRKAITV-DRRATIDEKLCINCGKCMENCPYHSI 163



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 15/61 (24%)

Query: 9   CILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           CI C                  C E CPV    + E     I   +CI CG C  ECP  
Sbjct: 148 CINCGKCMENCPYHSIIKIPVPCEEACPVGAISKDEKGHEKIDYHKCIFCGNCMRECPFG 207

Query: 54  A 54
           A
Sbjct: 208 A 208


>gi|242278357|ref|YP_002990486.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121251|gb|ACS78947.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 266

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E+C+ C    C E+CP     + E+   I   +CI C  C  +CP  A      P  +
Sbjct: 191 VDESCVQCGL--CAEICPTGAI-DAEDSSVIDTVKCITCCACLKKCPNQARAMKDGPVKD 247

Query: 65  LWLKINSEYAT 75
             +++N  +A 
Sbjct: 248 ARVRLNRLFAE 258



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 16  DCVEVCPVDCFYEGE------NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            CV   P +  Y G       +F+A+  + C+ CG+C   CP  AI  + 
Sbjct: 166 SCVNNIPGEYPYRGSTELWDVDFIAVD-ESCVQCGLCAEICPTGAIDAED 214


>gi|298373293|ref|ZP_06983282.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274345|gb|EFI15897.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 491

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +T  C  C    C   CP +  +  +N    I  D CI CG+C   CP  AI  
Sbjct: 114 YEITNLCKGCVARGCYTNCPKNAVHFQKNGQAQIDHDACISCGICHQSCPYHAIVY 169



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E     I   +CI CG C   CP
Sbjct: 150 DACISCGICHQSCPYHAIVYIPVPCEESCPVKAISKDEFGIEHIDESKCIYCGKCINACP 209

Query: 52  VDAIKP 57
             AI  
Sbjct: 210 FGAIFE 215


>gi|281179727|dbj|BAI56057.1| formate hydrogenlyase subunit [Escherichia coli SE15]
          Length = 203

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAITRVDGAVHLNESLCVSCKLCGIACPFGAIEF 99


>gi|289191701|ref|YP_003457642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938151|gb|ADC68906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 389

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVTE C+ C    CV  CPV      +    I   +CI C +C   CP +AI 
Sbjct: 135 VVTEACVGCG--ICVPECPVSAITLEDGKAVIDKSKCIYCSICAQTCPWNAIF 185



 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C    CVEVCP +    + EN + I P  C  C +C   CPV+A++ + +
Sbjct: 203 VNAEKCIYCL--KCVEVCPGNMIKVDKENMIVIPPKSCPACKLCVNTCPVNALELEVK 258



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP +     E+   +    CI CG C   CP  A+K
Sbjct: 281 KKCASVCPTEAIVVDEDKKEV--RMCIVCGACTVACPTGALK 320


>gi|238759103|ref|ZP_04620272.1| Hydrogenase-2 operon protein hybA [Yersinia aldovae ATCC 35236]
 gi|238702651|gb|EEP95199.1| Hydrogenase-2 operon protein hybA [Yersinia aldovae ATCC 35236]
          Length = 329

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +  K D
Sbjct: 100 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPDVCTGCRYCMVGCPFNVPKYD 155


>gi|238059197|ref|ZP_04603906.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
 gi|237881008|gb|EEP69836.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
          Length = 294

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 114 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCIPACPYGVI 164


>gi|237731324|ref|ZP_04561805.1| tetrathionate reductase subunit B [Citrobacter sp. 30_2]
 gi|226906863|gb|EEH92781.1| tetrathionate reductase subunit B [Citrobacter sp. 30_2]
          Length = 249

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 105 CNHCDNPPCVPVCPVQATFQREDGIVVVDNTRCVGCAYCVQACPYDARFINHETQTADK 163


>gi|157163871|ref|YP_001467642.1| ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
           [Campylobacter concisus 13826]
 gi|157101373|gb|ABV23503.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter concisus 13826]
          Length = 183

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
            +T +C  C    C++VCPV  + + EN +   +H D+CI CG C   CP  +I
Sbjct: 54  FITHSCHHCDEPACMDVCPVGAYIKLENGVVQPLH-DKCIGCGYCLMACPYGSI 106


>gi|14520613|ref|NP_126088.1| electron transport protein [Pyrococcus abyssi GE5]
 gi|5457829|emb|CAB49319.1| Electron transport protein, containing 4Fe-4S binding domain
           [Pyrococcus abyssi GE5]
          Length = 166

 Score = 56.3 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C+E CP          L +  +EC  CG C   CP  A+K
Sbjct: 53  CRQCDPAPCMEACPTGAIKRENGVLVVSAEECTGCGECVRACPFGAVK 100


>gi|260655742|ref|ZP_05861211.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
 gi|260629358|gb|EEX47552.1| conserved domain protein [Jonquetella anthropi E3_33 E1]
          Length = 56

 Score = 56.3 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  VV  + C+ C+   CV  CPV+     ++   ++P+ C++CG C   CP +AI
Sbjct: 1  MAAVVNKDMCVGCE--TCVGTCPVEAISMADDKAVVNPEVCVECGACVSACPSEAI 54


>gi|284006931|emb|CBA72203.1| electron transport protein [Arsenophonus nasoniae]
          Length = 181

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP        +F+ +H   CI C  C   CP  A++  + P
Sbjct: 58  CRQCEDAPCANVCPNGAITRESDFVHVHQARCIGCKTCVVACPYGAMEVVSRP 110


>gi|254500510|ref|ZP_05112661.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222436581|gb|EEE43260.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 245

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 78  SCLHCDDAPCVTVCPTGASYKRREDGIVLVNEDACIGCGLCAWACPYGARELDQAEG 134


>gi|77919712|ref|YP_357527.1| indolepyruvate oxidoreductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545795|gb|ABA89357.1| indolepyruvate oxidoreductase, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           MT  V   C  C++      CP   + E    + I  D C+ CGVCE  CP  AI 
Sbjct: 554 MT--VGAECNGCRYCIKAFECPALVYDEPSGRVCIDNDLCVGCGVCERVCPRGAIH 607


>gi|294636444|ref|ZP_06714823.1| formate-dependent nitrite reductase, NrfC protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090296|gb|EFE22857.1| formate-dependent nitrite reductase, NrfC protein [Edwardsiella
           tarda ATCC 23685]
          Length = 255

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   C+ VCPV   Y+ E+ +  +    C+ C  C   CP DA
Sbjct: 109 CNHCEAPPCIPVCPVQATYQREDGIVMVDNTRCVGCAYCVQACPYDA 155


>gi|289191613|ref|YP_003457554.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938063|gb|ADC68818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 151

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C++  C E+CPVD  Y  E    +  + CI CG+C   CP+ AI 
Sbjct: 42 CMQCENAPCKEICPVDAIYLKEGIPIVDKERCIACGMCAIACPIGAIF 89


>gi|256824301|ref|YP_003148261.1| formate dehydrogenase subunit beta [Kytococcus sedentarius DSM
           20547]
 gi|256687694|gb|ACV05496.1| formate dehydrogenase beta subunit [Kytococcus sedentarius DSM
           20547]
          Length = 391

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+  T+ 
Sbjct: 196 SDVCKHCTHAGCLDVCPTGALFRSEFGTVVVQADICNGCGYCVGACPFGVIERRTDA 252


>gi|254436213|ref|ZP_05049720.1| hypothetical protein NOC27_3276 [Nitrosococcus oceani AFC27]
 gi|207089324|gb|EDZ66596.1| hypothetical protein NOC27_3276 [Nitrosococcus oceani AFC27]
          Length = 52

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
               + +L IN+E A  WP IT  KE    A + D +K 
Sbjct: 1  MPKEHQKYLGINAELAKSWPVITESKEPPADADQWDRIKN 40


>gi|54298873|ref|YP_125242.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
 gi|53752658|emb|CAH14093.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
          Length = 204

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C  T C++ CPVD        +  I   EC  CG+C   CPVD I+  + P  
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIIAHECTGCGLCVDPCPVDCIEMVSLPAA 137



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 79 IKEDECIGCTKCIKACPVDAI 99


>gi|238787390|ref|ZP_04631189.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           frederiksenii ATCC 33641]
 gi|238724652|gb|EEQ16293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           frederiksenii ATCC 33641]
          Length = 182

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++ +C  C    C++VCP + + +  + + +   D+CI C +C   CP +A   D + G
Sbjct: 52  FISMSCNHCDDPQCMKVCPANTYSKRPDGIVVQDHDKCIGCRMCIMACPYNAPVFDPQEG 111


>gi|300088267|ref|YP_003758789.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528000|gb|ADJ26468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 87

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +TE CI C    C   CP +   EGE    I P  C +C        C   CPVD 
Sbjct: 1  MAFKITEECISCG--ACEPECPNNAITEGETIYVIDPTRCTECVGAFSTKQCADICPVDC 58

Query: 55 IKPDT 59
            PD 
Sbjct: 59 CVPDD 63


>gi|296108767|ref|YP_003615716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295433581|gb|ADG12752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 150

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C+   C+E+CPVD  Y  E    ++ ++CI C +C   CP+ AI 
Sbjct: 42 CMQCEKAPCMEICPVDAIYLEEGIPIVNKEKCIGCAMCVIACPIGAIF 89


>gi|11465802|ref|NP_053946.1| hypothetical protein PopuCp151 [Porphyra purpurea]
 gi|1723405|sp|P51336|YCXI_PORPU RecName: Full=Uncharacterized protein in rpl9-rpl11 intergenic
          region; AltName: Full=ORF75
 gi|1276802|gb|AAC08222.1| ORF75 [Porphyra purpurea]
          Length = 75

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-------ECIDCGVCEPECPV 52
          M++ +VTE CI     +CV  CPV C ++GE    I+ D        CIDC +C   CP 
Sbjct: 1  MSHTIVTEKCIGV--AECVNACPVSCIHKGEGKNTINKDWYWIDFAACIDCSICIQVCPT 58

Query: 53 -DAIKPDTEPGLE 64
            AI    EP L+
Sbjct: 59 KGAILDKEEPSLQ 71


>gi|295111540|emb|CBL28290.1| electron transport complex, RnfABCDGE type, B subunit
           [Synergistetes bacterium SGP1]
          Length = 277

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C  VCP        +   I P +C +CG+C  +CP   I+
Sbjct: 220 CIGCGL--CARVCPAGAITMDRDLAVIDPAKCTNCGLCAQKCPAKCIE 265



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           CI      C +VC  D  + G + L  +  ++C+ CG C   CP
Sbjct: 145 CIG--FGTCTKVCNFDAIFMGPDGLPVVDREQCVGCGACVSACP 186



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCEPEC 50
           E C+ C    CV  CP D                   +G     +    CI CG+C   C
Sbjct: 173 EQCVGCG--ACVSACPKDVLTLIPQTSDVVVACGSHWKGPAVRRVCSIGCIGCGLCARVC 230

Query: 51  PVDAIKPDTE 60
           P  AI  D +
Sbjct: 231 PAGAITMDRD 240


>gi|161503359|ref|YP_001570471.1| hypothetical protein SARI_01432 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864706|gb|ABX21329.1| hypothetical protein SARI_01432 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 205

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYSAPQY 116


>gi|54309722|ref|YP_130742.1| electron transport complex protein RnfB [Photobacterium profundum
           SS9]
 gi|46914160|emb|CAG20940.1| Putative RnfB-related protein [Photobacterium profundum SS9]
          Length = 192

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEMIPV 163

Query: 58  -DTEPGLEL 65
            DT    + 
Sbjct: 164 KDTPESWKW 172


>gi|188997094|ref|YP_001931345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932161|gb|ACD66791.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 211

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVSALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYID 107



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 31/120 (25%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPVDA 54
           CI C    C+  CP +          I P     D+C  C           C   CP  A
Sbjct: 89  CIGC--ASCMMACPYNAI-------YIDPITNSADKCTYCAHRIEVGMMPACVVACPTHA 139

Query: 55  -IKPDTEPGLELWLKINSEYATQWPNITTKKESL---PSAAKMDGVKQKYEKYFSPNPGG 110
            I  D +       +I S+Y  +  ++  +K  L   P    + G     +   S  P G
Sbjct: 140 NIFGDLDDPES---EI-SKYLKEHRDVMVRKPELNTKPKHFYVRGSTVALDPLASERPEG 195


>gi|147920357|ref|YP_685870.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110621266|emb|CAJ36544.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 130

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV VCPVD   YE +  + I    C+ CG C   CP  AI+
Sbjct: 79  CVHCG--ACVSVCPVDAISYEHDWQVTIDKAACVQCGTCTHACPTSAIR 125



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +    ++C+ CG C   CPVDAI  + +
Sbjct: 69 GEAIVKDDNQCVHCGACVSVCPVDAISYEHD 99


>gi|148265410|ref|YP_001232116.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146398910|gb|ABQ27543.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 281

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F + +   +      CI C  C   CP    K +
Sbjct: 82  EMCMHCNEPACASVCPVGAFKKTKEGPVVYDAKRCIGCRFCMVACPFGVPKYE 134


>gi|330877327|gb|EGH11476.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 291

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+   
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-DECTGCDLCVAPCPVDCIEMHA 140

Query: 60  EP 61
            P
Sbjct: 141 LP 142



 Score = 34.0 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEM 138


>gi|323196185|gb|EFZ81343.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
          Length = 117

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|261402831|ref|YP_003247055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369824|gb|ACX72573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT++C+ C    CV  CPV      +    I   +C+ C +C   CP +AI 
Sbjct: 134 VVTDDCVGCGV--CVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPWNAIF 184



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 14/63 (22%)

Query: 9   CILCKHTDCVEVCPVDCF-----YEGENFLAIHP-------DECIDCGVCEPECPVDAIK 56
           C+LC    C++VCP++        +        P       D+C+ CGVC PECPV AI 
Sbjct: 98  CVLC--QKCIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAIT 155

Query: 57  PDT 59
            + 
Sbjct: 156 LED 158



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C+ C    CVE+CP D     EN  + + P  C  C +C   CPV+A+  + +
Sbjct: 202 VDAEKCVYCL--KCVEICPGDMIKVDENNMIVVPPKSCPACKLCVNTCPVNALDLEVK 257



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP +     E    +    CI CG C   CP  A+K
Sbjct: 280 KKCASVCPTEAIIVDEEKREV--RMCIVCGACTVACPTGALK 319


>gi|238756491|ref|ZP_04617796.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
 gi|238705278|gb|EEP97690.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
          Length = 207

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDESNCIGC--TKCIQACPVDAIIGATRAMHTVLPDLCTGCDLCVDPCPTDCIE 163


>gi|225181056|ref|ZP_03734503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168253|gb|EEG77057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 416

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDA 54
           V E C  C    CV+ CPVD        E    I  + C+ CGVC  +CP  A
Sbjct: 286 VLEGCTGCG--KCVQACPVDAIGVTDKEEKKAQIDTEYCLGCGVCTVQCPTKA 336



 Score = 40.5 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKE 85
           C  CG C   CPVDAI        E   +I++EY       T +  
Sbjct: 290 CTGCGKCVQACPVDAI--GVTDKEEKKAQIDTEYCLGCGVCTVQCP 333


>gi|15668327|ref|NP_247123.1| formate dehydrogenase, iron-sulfur subunit [Methanocaldococcus
          jannaschii DSM 2661]
 gi|2833496|sp|Q57619|FER8_METJA RecName: Full=Uncharacterized ferredoxin MJ0155
 gi|1498926|gb|AAB98137.1| formate dehydrogenase, iron-sulfur subunit [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 151

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C++  C E+CPVD  Y  +    +  + CI CG+C   CP+ AI 
Sbjct: 42 CMQCENAPCKEICPVDAIYLKDGIPIVDKERCIACGMCAIACPIGAIF 89


>gi|289803762|ref|ZP_06534391.1| electron transport protein HydN [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 148

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 25 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 77


>gi|220935363|ref|YP_002514262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996673|gb|ACL73275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 244

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+H  CV+VCP    F   +  + ++   CI C  C   CP  A
Sbjct: 106 CQHCEHPPCVDVCPTGASFRRADGIVLVNKHTCIGCRYCMMACPYKA 152


>gi|161503521|ref|YP_001570633.1| hypothetical protein SARI_01597 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864868|gb|ABX21491.1| hypothetical protein SARI_01597 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 250

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 106 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 164


>gi|330937551|gb|EGH41492.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 291

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASKLMHTVII-DECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CVAPCPVDCIEM 138


>gi|310825953|ref|YP_003958310.1| putative nitrite and sulfite reductase subunit [Eubacterium limosum
           KIST612]
 gi|308737687|gb|ADO35347.1| putative nitrite and sulfite reductase subunit [Eubacterium limosum
           KIST612]
          Length = 311

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C      + CP+D     +  L I  ++C +CG+C   C  DAI PD E   ++++
Sbjct: 171 CKGCSKCSVEDRCPMDAATVTDGKLVIDEEKCNNCGLCVDNCRFDAI-PDGEVRYKVYV 228


>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
           culture clone BF]
          Length = 595

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           +V E C  C    C +VCPV         L  I P++C  C  C   C   AIK
Sbjct: 543 IVPEECKKCG--ACAKVCPVGAIKGKPKELHEIDPEKCTKCEACIKACHFKAIK 594



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +VCP     +  + + I P+EC  CG C   CPV AIK
Sbjct: 528 KVCPAG-VCKKLSKIRIVPEECKKCGACAKVCPVGAIK 564


>gi|261403601|ref|YP_003247825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370594|gb|ACX73343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT++C+ C    CV  CPV      +    I   +C+ C +C   CP +AI 
Sbjct: 134 VVTDDCVGCGV--CVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPWNAIF 184



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 14/63 (22%)

Query: 9   CILCKHTDCVEVCPVDCF-----YEGENFLAIHP-------DECIDCGVCEPECPVDAIK 56
           C+LC    C++VCP++        +        P       D+C+ CGVC PECPV AI 
Sbjct: 98  CVLC--QKCIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAIT 155

Query: 57  PDT 59
            + 
Sbjct: 156 LED 158



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C+ C    CVE+CP D     EN  + + P  C  C +C   CPV+A+  + +
Sbjct: 202 VDAEKCVYCL--KCVEICPGDMIKVDENNMIVVPPKSCPACKLCVNTCPVNALDLEVK 257



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP +     E    +    CI CG C   CP  A+K
Sbjct: 280 KKCASVCPTEAIIVDEEKREV--RMCIVCGACTVACPTGALK 319


>gi|237755465|ref|ZP_04584088.1| sulfur reductase FeS subunit [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692365|gb|EEP61350.1| sulfur reductase FeS subunit [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 211

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVSALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYID 107



 Score = 41.7 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 31/120 (25%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPVDA 54
           CI C    C+  CP +          I P     D+C  C           C   CP  A
Sbjct: 89  CIGC--ASCMMACPYNAI-------YIDPITNSADKCTYCAHRIEVGMMPACVVACPTHA 139

Query: 55  -IKPDTEPGLELWLKINSEYATQWPNITTKKESL---PSAAKMDGVKQKYEKYFSPNPGG 110
            I  D +       +I S+Y  +  ++  +K  L   P    + G     +   S  P G
Sbjct: 140 NIFGDLDDPES---EI-SKYLKEHRDVMVRKPELNTKPKHFYVRGSTVALDPLASERPEG 195


>gi|295091990|emb|CBK78097.1| Uncharacterized Fe-S center protein [Clostridium cf.
           saccharolyticum K10]
          Length = 368

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +++ + CI C    C   C        E    I   +C+ CG C   CPVDA+
Sbjct: 190 PFILQDQCIGC--HACERDCAHGAISFPEKKAFIDESKCVGCGRCIGVCPVDAV 241



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            I  D+CI C  CE +C   AI     P  + ++ 
Sbjct: 191 FILQDQCIGCHACERDCAHGAISF---PEKKAFID 222


>gi|157148251|ref|YP_001455570.1| electron transport protein HydN [Citrobacter koseri ATCC BAA-895]
 gi|157085456|gb|ABV15134.1| hypothetical protein CKO_04068 [Citrobacter koseri ATCC BAA-895]
          Length = 195

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 72  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 124


>gi|325830836|ref|ZP_08164220.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487243|gb|EGC89686.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 214

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+T+ C  C    C + CP  C  EG    AI  + C+ CG+C   C   AI
Sbjct: 161 FVITDRCQECG--ACADACPEACIEEGPP-YAIVQEHCLRCGLCRETCSFGAI 210



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 38  DECIDCGVCEPECPVDAIKP 57
           D C +CG C   CP   I+ 
Sbjct: 165 DRCQECGACADACPEACIEE 184


>gi|257064377|ref|YP_003144049.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792030|gb|ACV22700.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 174

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ +C+ C+   C+EVCP     +     + +  D CI C  C   CP  A   D
Sbjct: 59  VSVSCMHCEKPACLEVCPAGAISKTIGGIVVVDKDLCIGCKYCYQACPFQAPHYD 113


>gi|153953876|ref|YP_001394641.1| hypothetical protein CKL_1251 [Clostridium kluyveri DSM 555]
 gi|219854491|ref|YP_002471613.1| hypothetical protein CKR_1148 [Clostridium kluyveri NBRC 12016]
 gi|146346757|gb|EDK33293.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219568215|dbj|BAH06199.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 273

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +NC  CK   CV VCP+      +  ++     CI CG C  +CP  A   D E  L   
Sbjct: 201 DNCTDCK--ICVNVCPMGSIDFKD--VSKLNGICIKCGACIKKCPHGAKYYDDEDYLRHK 256

Query: 67  LKINSEYATQ 76
            ++  E+A++
Sbjct: 257 YELEIEFASR 266


>gi|302386104|ref|YP_003821926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium saccharolyticum WM1]
 gi|302196732|gb|ADL04303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  E CI C    C + C             I  + C+ CG C   CPVDA++ D + 
Sbjct: 190 PHVTEETCIGC--HACEKNCAHSAISFQNKKAGIDHNLCVGCGRCIGVCPVDAVETDFDE 247

Query: 62  GLELWLKINSEYAT 75
             ++   +N + A 
Sbjct: 248 SNDI---LNCKIAE 258


>gi|255322208|ref|ZP_05363354.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           showae RM3277]
 gi|255300581|gb|EET79852.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           showae RM3277]
          Length = 246

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCP    Y+  N +  ++  ECI C +C   CP  A
Sbjct: 95  CNHCENPACIDVCPTGASYQRSNGIVKVNSAECIGCALCAEACPYHA 141


>gi|283797800|ref|ZP_06346953.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1]
 gi|291074483|gb|EFE11847.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1]
          Length = 368

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +++ + CI C    C   C        E    I   +C+ CG C   CPVDA+
Sbjct: 190 PFILQDQCIGC--HACERDCAHGAISFPEKKAFIDESKCVGCGRCIGVCPVDAV 241



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            I  D+CI C  CE +C   AI     P  + ++ 
Sbjct: 191 FILQDQCIGCHACERDCAHGAISF---PEKKAFID 222


>gi|312136493|ref|YP_004003830.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermus fervidus DSM 2088]
 gi|311224212|gb|ADP77068.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanothermus fervidus DSM 2088]
          Length = 128

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 3  YVVTENCILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          Y V   C+ C  K+  C+ +CP D      + + I  D+CI CG C   CPV AI  D  
Sbjct: 29 YKVPIFCLHCDPKNAPCLNICPSDAIKSINDAIVIDRDKCIGCGSCVNVCPVGAIFLDER 88

Query: 61 PGLEL 65
             E 
Sbjct: 89 GLAEK 93



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG--VCEPECPVDAIKPDTEPGLE 64
           + CI C    CV VCPV   +  E  LA   D CID    +C   CP   ++ +     +
Sbjct: 66  DKCIGCG--SCVNVCPVGAIFLDERGLAEKCDLCIDFEEPLCVKVCPTGCLRENFSDEDD 123


>gi|295115197|emb|CBL36044.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium
           SM4/1]
          Length = 368

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +++ + CI C    C   C        E    I   +C+ CG C   CPVDA+
Sbjct: 190 PFILQDQCIGC--HACERDCAHGAISFPEKKAFIDESKCVGCGRCIGVCPVDAV 241



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            I  D+CI C  CE +C   AI     P  + ++ 
Sbjct: 191 FILQDQCIGCHACERDCAHGAISF---PEKKAFID 222


>gi|260769053|ref|ZP_05877987.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|260617083|gb|EEX42268.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|315180794|gb|ADT87708.1| electron transport complex protein RnfB [Vibrio furnissii NCTC
           11218]
          Length = 199

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|322418857|ref|YP_004198080.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
 gi|320125244|gb|ADW12804.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
          Length = 441

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          CI C    C   CPVD     +     I    CI C  C   CPV A++    P  
Sbjct: 22 CIACGAR-CQSACPVDAIQMNDAGEPIIDASRCIGCVKCVKVCPVQALEMSFTPEE 76



 Score = 37.4 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 38 DECIDCGV-CEPECPVDAIKPDT 59
          ++CI CG  C+  CPVDAI+ + 
Sbjct: 20 NKCIACGARCQSACPVDAIQMND 42


>gi|256810211|ref|YP_003127580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793411|gb|ACV24080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 390

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CV  CPV+     +N   I   +CI C +C   CP +AI 
Sbjct: 135 VTDACVGCGV--CVPECPVNAISIEDNKAVIDKSKCIYCSICAQTCPWNAIY 184



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C    CVEVCP D    + EN + + P  C  CG+C   CPV+A++ D +
Sbjct: 202 VEAEKCIYCL--KCVEVCPGDMIKVDNENMIVVPPKSCPACGLCVNICPVNALELDVK 257



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVD-----CFYEGENFLAIHP-------DECIDCGVCEPECPVDAIK 56
           C+LC    C++VCP++        +        P       D C+ CGVC PECPV+AI 
Sbjct: 98  CVLC--QKCIDVCPIEIISLPGIIDKPRREVKAPKDPIAVTDACVGCGVCVPECPVNAIS 155

Query: 57  PDTE 60
            +  
Sbjct: 156 IEDN 159



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP +     +    +    CI CG C   CP  A+K
Sbjct: 280 KKCASVCPTEAIVVDDEKKEV--KMCIVCGACTVACPTGALK 319


>gi|114566336|ref|YP_753490.1| formate dehydrogenase iron-sulfur subunit [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337271|gb|ABI68119.1| formate dehydrogenase beta subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 266

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C    C++VCP   + + E     H PD+CI C  C   CP +  K      
Sbjct: 75  CMHCFDPACMKVCPRQAYSKTEWGATFHDPDKCIGCQYCTYACPFEVPKYRKRED 129


>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 596

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E C  C  + C   CPV   Y+ E+    I   +C  CG+C   CP   IK +
Sbjct: 543 VIREECRKC--SICFRNCPVGAIYKDEDGTYVIDQSKCTKCGICFQVCPFKVIKKE 596



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              +  +EC  C +C   CPV AI  D +
Sbjct: 540 HYEVIREECRKCSICFRNCPVGAIYKDED 568


>gi|324005433|gb|EGB74652.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 289

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 69  IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCPGCRYCMVACPYNVPKYD 124


>gi|238749925|ref|ZP_04611429.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia rohdei ATCC 43380]
 gi|238711854|gb|EEQ04068.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia rohdei ATCC 43380]
          Length = 180

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIMCRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 102


>gi|171058834|ref|YP_001791183.1| putative glutamate synthase (NADPH) small subunit [Leptothrix
           cholodnii SP-6]
 gi|170776279|gb|ACB34418.1| Glutamate synthase (NADH) [Leptothrix cholodnii SP-6]
          Length = 571

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 9   CILCKHT----DCVEVCPVDC-FYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C +     +C  VCP +     G      I+ D C  CG+C  ECP  AI+   E G
Sbjct: 512 CLSCGNCFECDNCYGVCPDNAVIKLGPGRRFEINLDYCKGCGMCAAECPCGAIEMVAETG 571


>gi|16760525|ref|NP_456142.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16764735|ref|NP_460350.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29141714|ref|NP_805056.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|207857109|ref|YP_002243760.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584104|ref|YP_002637902.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|4456871|emb|CAB37414.1| tetrathionate reductase subunit B (TtrB) [Salmonella typhimurium]
 gi|11139591|gb|AAG31757.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419905|gb|AAL20309.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16502821|emb|CAD01980.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137342|gb|AAO68905.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|206708912|emb|CAR33242.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468631|gb|ACN46461.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246591|emb|CBG24401.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993272|gb|ACY88157.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157920|emb|CBW17415.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323129656|gb|ADX17086.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623491|gb|EGE29836.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988272|gb|AEF07255.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 250

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 106 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 164


>gi|89895846|ref|YP_519333.1| formate dehydrogenase beta subunit [Desulfitobacterium hafniense
           Y51]
 gi|89335294|dbj|BAE84889.1| formate dehydrogenase beta subunit [Desulfitobacterium hafniense
           Y51]
          Length = 271

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C++ C  +   + E  F  I  D+CI CG C   CP D  + D
Sbjct: 74  CFHCADAACLKACSSEAISKTETGFTIIDEDKCIGCGYCVTNCPFDIPRID 124


>gi|221067205|ref|ZP_03543310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
 gi|220712228|gb|EED67596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
           testosteroni KF-1]
          Length = 235

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C    CV VCPV   F   +  + +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 90  CNHCDEPPCVPVCPVQATFQRTDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 148


>gi|205354067|ref|YP_002227868.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273848|emb|CAR38847.1| hydrogenase-2 small subunit [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326629183|gb|EGE35526.1| hydrogenase-2 subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 328

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +H D+  C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHHDKDVCTGCRYCMVACPYNVPKYD 163


>gi|167630112|ref|YP_001680611.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
 gi|167592852|gb|ABZ84600.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
          Length = 373

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C +C    C+  CPVD    GE    I  + CI CG C   CP  AI  + +    
Sbjct: 189 VNDKCKVCG--KCLRWCPVDAISLGER-AVIAGERCIGCGECTVTCPHKAIAVNWKTDAG 245

Query: 65  LWLKINSEYA 74
           L  +  +EYA
Sbjct: 246 LLQEKMAEYA 255


>gi|168263787|ref|ZP_02685760.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445522|ref|YP_002040639.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197262048|ref|ZP_03162122.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|194404185|gb|ACF64407.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197240303|gb|EDY22923.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205347598|gb|EDZ34229.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 244

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|123443024|ref|YP_001006998.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122089985|emb|CAL12842.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 180

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIMCRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 102


>gi|222054732|ref|YP_002537094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221564021|gb|ACM19993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 284

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F + +   +      CI C  C   CP    K +
Sbjct: 82  EMCMHCNDPACASVCPVGAFNKTKEGPVVYDTKRCIGCRFCMVACPFGVPKYE 134


>gi|78221904|ref|YP_383651.1| electron transfer flavoprotein subunit alpha [Geobacter
          metallireducens GS-15]
 gi|78193159|gb|ABB30926.1| Electron transfer flavoprotein, alpha subunit [Geobacter
          metallireducens GS-15]
          Length = 443

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +   CI C    C   CPVD     +     I  ++CI C  C   CP DA++    P  
Sbjct: 17 IPGKCIACGAR-CQSACPVDAIEMSDAGEPIILSEKCIGCLKCVKVCPADALEMFFTPEE 75

Query: 64 ELWLKINSEYATQ 76
             LKI  E A Q
Sbjct: 76 ---LKILEELARQ 85


>gi|73670065|ref|YP_306080.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
 gi|72397227|gb|AAZ71500.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
          Length = 792

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 19/84 (22%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-------------CFYE-----GENFLAIHPDECIDCG 44
           +++ + C  C    C  VCPV+               Y          + I PD C+ CG
Sbjct: 237 FILEDKCKGCVDL-CSAVCPVEIENPMNYGVGKTRAIYMPIPQSVPQVVLIDPDHCVGCG 295

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
           +C   CP DA+  + +P    +  
Sbjct: 296 LCLQACPADAVDYEQKPEEIEFEA 319



 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V  E CI C    C+EVC             +    C  CG C   CP  AI+
Sbjct: 573 AHVDPEKCIGC--RTCLEVCKFGKIKIENKKAVVDEVSCYGCGDCSAACPAGAIQ 625


>gi|219670276|ref|YP_002460711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540536|gb|ACL22275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 271

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C++ C  +   + E  F  I  D+CI CG C   CP D  + D
Sbjct: 74  CFHCADAACLKACSSEAISKTETGFTIIDEDKCIGCGYCVTNCPFDIPRID 124


>gi|332161092|ref|YP_004297669.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318604971|emb|CBY26469.1| electron transport protein HydN [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665322|gb|ADZ41966.1| 4Fe-4S ferrodoxin [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863812|emb|CBX73907.1| electron transport protein hydN [Yersinia enterocolitica W22703]
          Length = 180

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIMCRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 102


>gi|317055121|ref|YP_004103588.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
          domain-containing protein [Ruminococcus albus 7]
 gi|315447390|gb|ADU20954.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Ruminococcus albus 7]
          Length = 410

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDE--CIDCGVCEPECPV 52
          V ++C  C  + C+  CP +C     +GE FL  + DE  C+DCG C   CPV
Sbjct: 7  VKKDCCGC--SACMNSCPRNCITMQPDGEGFLYPNVDEKLCVDCGRCVNVCPV 57


>gi|300853896|ref|YP_003778880.1| putative Fe-S-cluster-containing hydrogenase components 2
           [Clostridium ljungdahlii DSM 13528]
 gi|300434011|gb|ADK13778.1| predicted Fe-S-cluster-containing hydrogenase components 2
           [Clostridium ljungdahlii DSM 13528]
          Length = 188

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C + CPV+       +++++ D C+ C +C   CP  AI+
Sbjct: 60  CRQCEDAPCGKACPVNAISNENGYVSVNKDVCVGCKICMLACPFGAIE 107


>gi|163752219|ref|ZP_02159421.1| hypothetical protein KT99_10608 [Shewanella benthica KT99]
 gi|161327900|gb|EDP99078.1| hypothetical protein KT99_10608 [Shewanella benthica KT99]
          Length = 697

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 168 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 223


>gi|147678456|ref|YP_001212671.1| hypothetical protein PTH_2121 [Pelotomaculum thermopropionicum SI]
 gi|146274553|dbj|BAF60302.1| Uncharacterized Fe-S center protein [Pelotomaculum
           thermopropionicum SI]
          Length = 367

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C+   C + CP            +  ++CI CG C   CPV AI
Sbjct: 190 VNPEKCTGCE--RCSQWCPAQAIGVRGRVSVVDENKCIGCGECTVTCPVHAI 239


>gi|315299687|gb|EFU58929.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
          Length = 459

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 327 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 386

Query: 64  ELWLKINSEYATQWPNITTK----------KESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           +      S  A  +P I             +E  P        + KY +Y    PG  
Sbjct: 387 KCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQ-ENKYYQY--QLPGAG 441


>gi|238761063|ref|ZP_04622040.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
 gi|238761316|ref|ZP_04622292.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
 gi|238700290|gb|EEP93031.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
 gi|238700543|gb|EEP93283.1| Electron transport protein hydN [Yersinia kristensenii ATCC 33638]
          Length = 190

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 64  TIMCRHCEDAPCANVCPNGAIVRAADSIQVLQEKCIGCKTCVVACPYGA 112


>gi|56412592|ref|YP_149667.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361527|ref|YP_002141163.1| anaerobic reductase component [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56126849|gb|AAV76355.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093003|emb|CAR58436.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 209

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP DA + + 
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYDAPQLNE 130

Query: 60  EPGL 63
           +   
Sbjct: 131 QTSQ 134


>gi|15669380|ref|NP_248188.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|41018414|sp|Q58593|VHUB_METJA RecName: Full=Polyferredoxin protein vhuB
 gi|1591821|gb|AAB99195.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 394

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CV  CPV+      N   I   +CI C +C   CP +AI 
Sbjct: 138 VTDACVGCG--ICVPECPVNAITLENNKAVIDKSKCIYCSICAQTCPWNAIF 187



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C    CVEVCP D    + EN + I P  C  C +C   CPVDA+  + +
Sbjct: 205 VNAEKCIYCL--KCVEVCPGDMIKVDEENLIVIPPKSCPACKLCVNICPVDALDLEVK 260



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C  VCP +     E    +    CI CG C   CP  A+K
Sbjct: 283 KKCASVCPTEAIVVDEEKKEV--RMCIVCGACTVACPTGALK 322


>gi|148262936|ref|YP_001229642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396436|gb|ABQ25069.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 261

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+ E+ +  +    CI CG C   CP  
Sbjct: 127 AFFVPKLCNQCDNPPCVQVCPVGATYQTEDGVVLVDRSWCIGCGYCIMGCPYG 179


>gi|88808579|ref|ZP_01124089.1| ferredoxin [Synechococcus sp. WH 7805]
 gi|88787567|gb|EAR18724.1| ferredoxin [Synechococcus sp. WH 7805]
          Length = 74

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C   G+       +F  I  + CIDCG+C   CPV
Sbjct: 1  MAHTIVTDICEGV--ADCVDACPVACIQPGKGKNKKGTDFYWIDFETCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          D AI  +    L+ 
Sbjct: 59 DGAILAEERQELQK 72


>gi|330966554|gb|EGH66814.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 310

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+   
Sbjct: 103 AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-DECTGCDLCVAPCPVDCIEMHA 159

Query: 60  EP 61
            P
Sbjct: 160 LP 161



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 132 MHTVIIDECTGCDL--CVAPCPVDCIEM 157


>gi|303244452|ref|ZP_07330787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485150|gb|EFL48079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 132

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           + CI C    C+  CPV      E+F  I   +ECI C  C   CPV AI
Sbjct: 80  DKCIDCG--ACLVHCPVKAITMNEDFKVIFDENECIGCKNCANVCPVKAI 127



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              +  + D+CIDCG C   CPV AI  + +
Sbjct: 72  PKMIQKNDDKCIDCGACLVHCPVKAITMNED 102


>gi|206900688|ref|YP_002250628.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
 gi|206739791|gb|ACI18849.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
          Length = 443

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C  C H  C+  CP +          I P  CIDCG C   CP  A  
Sbjct: 14 QRCRGCIH--CIRHCPTEAMRVRNGKSLIIPYRCIDCGECIRVCPYHAPF 61


>gi|253699697|ref|YP_003020886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251774547|gb|ACT17128.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 260

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+ E+ +  +    CI CG C   CP  
Sbjct: 126 AFFVPKLCNQCDNPPCVQVCPVGATYQTEDGVVLVDRKWCIGCGYCIMGCPYG 178


>gi|78222168|ref|YP_383915.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193423|gb|ABB31190.1| Indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
           [Geobacter metallireducens GS-15]
          Length = 601

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +++ C  C++      CP   + E E  +AI    C DCGVC   CP  AI+ 
Sbjct: 546 ISDACNGCRYCTTQFECPALVYDEEEKRVAIDTLICTDCGVCIDVCPRLAIEE 598


>gi|255994340|ref|ZP_05427475.1| protein HymB [Eubacterium saphenum ATCC 49989]
 gi|255993053|gb|EEU03142.1| protein HymB [Eubacterium saphenum ATCC 49989]
          Length = 593

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           TY + + C+ C  T C   CPV            I  ++CI CG C   C   ++  D
Sbjct: 538 TYTILDTCVGC--TACARNCPVGAITGSPKGQHVIDQEKCIKCGKCLESCRFSSVNLD 593


>gi|291288473|ref|YP_003505289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885633|gb|ADD69333.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 221

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           + V + C  C    C+  CP    ++ EN +  ++ D CI CG C   CP  A
Sbjct: 53  HFVPKLCNNCDDAPCIAACPTGATFKMENGIVAVNRDTCIGCGRCAEMCPYGA 105


>gi|134100101|ref|YP_001105762.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291002905|ref|ZP_06560878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912724|emb|CAM02837.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 300

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 120 SDVCKHCTHAACLDVCPTGALFRTEYGTVVVQDDVCNGCGYCVPACPYGVI 170


>gi|73748066|ref|YP_307305.1| putative Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. CBDB1]
 gi|147668904|ref|YP_001213722.1| formate dehydrogenase beta subunit [Dehalococcoides sp. BAV1]
 gi|289432093|ref|YP_003461966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
 gi|73659782|emb|CAI82389.1| putative Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. CBDB1]
 gi|146269852|gb|ABQ16844.1| formate dehydrogenase beta subunit [Dehalococcoides sp. BAV1]
 gi|288945813|gb|ADC73510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
          Length = 267

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    CV VCPV   ++  N   +   D+C  C  C+  CP +  K + +     
Sbjct: 73  CLHCYEPACVSVCPVGALHKRPNGAVVWDQDKCFGCRYCQNACPFEIPKFEWDDNWAK 130


>gi|298506822|gb|ADI85545.1| electron transfer flavoprotein, alpha subunit [Geobacter
          sulfurreducens KN400]
          Length = 447

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +   CI C    C   CPV+C    +     I  ++CI C  C   CP +A++    P  
Sbjct: 17 IEGKCIACGAR-CQSACPVNCIDMNDAGEPIILSEKCIGCVKCVKVCPAEALEMFFTPEE 75

Query: 64 ELWLKINSEYATQ 76
             LKI  E A Q
Sbjct: 76 ---LKILEELARQ 85


>gi|260773761|ref|ZP_05882676.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio
           metschnikovii CIP 69.14]
 gi|260610722|gb|EEX35926.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio
           metschnikovii CIP 69.14]
          Length = 204

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++  C  C    C +VCP    ++ E+   I     CI C +C   CP  A +   E
Sbjct: 59  SYYLSIACNHCDEPACAKVCPSGAMHKREDGFVIVDEAVCIGCKLCAMSCPYGAPQYSEE 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|296110007|ref|YP_003616956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
 gi|295434821|gb|ADG13992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus infernus ME]
          Length = 136

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C+   C+  CP +        + I  ++CI CG+C   CP  AIK
Sbjct: 32 CYHCEGNPCLLACPKEAIKRINGKVVIIEEKCIGCGLCALACPFGAIK 79


>gi|257792497|ref|YP_003183103.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317490367|ref|ZP_07948851.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833565|ref|ZP_08166014.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257476394|gb|ACV56714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316910502|gb|EFV32127.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485489|gb|EGC87958.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 194

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 1   MT-YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           MT Y +   C  C    CV VCP    + +G N + I  ++CI C  C   CP  
Sbjct: 50  MTRYPLPTMCQQCADAPCVHVCPTGASYRDGNNVVLIDREKCIGCKYCMMACPYG 104


>gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 485

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ ENC  C  T C  VCP +    E      I  ++CI CG C   C  +AIK
Sbjct: 432 IIPENCTGC--TACARVCPTEAIQGELRKPHTIDQEKCIKCGSCYTTCRFNAIK 483



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I P+ C  C  C   CP +AI+ +     
Sbjct: 430 YEIIPENCTGCTACARVCPTEAIQGELRKPH 460


>gi|238792134|ref|ZP_04635769.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
 gi|238728371|gb|EEQ19890.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
          Length = 207

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|327398732|ref|YP_004339601.1| Indolepyruvate ferredoxin oxidoreductase [Hippea maritima DSM
           10411]
 gi|327181361|gb|AEA33542.1| Indolepyruvate ferredoxin oxidoreductase [Hippea maritima DSM
           10411]
          Length = 600

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV  + C  CK   C+    CP   F   +  + I    CI CG C   CP  AIK
Sbjct: 544 YVDKDKCTGCKV--CINRFECPSLVFDASDKKVGIDVSTCIKCGQCVFSCPYGAIK 597


>gi|312137027|ref|YP_004004364.1| archaeoflavoprotein, mj0208 family [Methanothermus fervidus DSM
           2088]
 gi|311224746|gb|ADP77602.1| archaeoflavoprotein, MJ0208 family [Methanothermus fervidus DSM
           2088]
          Length = 234

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C+       CP D    G     +   +CI CG CE  CP +AI
Sbjct: 145 DLCKNCETCKAAAACPTDAIIPGREIELL---KCIGCGSCEKACPYNAI 190


>gi|257790762|ref|YP_003181368.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474659|gb|ACV54979.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 260

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            C+ C++ +CV VCP     + ++ + I   D CI CG C   CP  A
Sbjct: 58  ACMHCENPECVSVCPTGASQKLDDGVVIVDYDACITCGYCMSACPYGA 105


>gi|225849205|ref|YP_002729369.1| sulfur reductase FeS subunit [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643270|gb|ACN98320.1| sulfur reductase FeS subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 211

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  C++  C  +CPV   +   N +  +  + CI C  C   CP +AI  D
Sbjct: 51  HFVPLRCNHCENAPCERICPVSALHYLPNGIVNVDHNRCIGCASCMMACPYNAIYID 107



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 31/120 (25%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPVDA 54
           CI C    C+  CP +          I P     D+C  C           C   CP  A
Sbjct: 89  CIGC--ASCMMACPYNAI-------YIDPITNSADKCTYCAHRIEVGMMPACVVACPTHA 139

Query: 55  -IKPDTEPGLELWLKINSEYATQWPNITTKKESL---PSAAKMDGVKQKYEKYFSPNPGG 110
            I  D +       +I S+Y  +  ++  +K  L   P    + G     +   S  P G
Sbjct: 140 NIFGDLDDPES---EI-SKYLKEHKDVMVRKPELNTKPKHFYVRGSTVALDPLASERPEG 195


>gi|119713742|gb|ABL97791.1| ferredoxin [uncultured marine bacterium HF10_29C11]
          Length = 63

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLELWLKINSEYATQWP 78
          + +L I PDECIDCG C PECPV+AI  DT      E W+  N   +   P
Sbjct: 2  DTYLIIDPDECIDCGACVPECPVEAIFADTDVPDEEEEWIDKNETESADAP 52


>gi|33862969|ref|NP_894529.1| ferredoxin, 4Fe-4S [Prochlorococcus marinus str. MIT 9313]
 gi|33634886|emb|CAE20872.1| ferredoxin, 4Fe-4S [Prochlorococcus marinus str. MIT 9313]
          Length = 74

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DC + CPV C   G+       NF  I+ D CIDCG+C   CPV
Sbjct: 1  MPHSIVTEICEGV--ADCAQACPVGCIQPGQGKNNKGRNFYLINFDICIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + A+ P+    L+
Sbjct: 59 EGAVLPEERRDLQ 71


>gi|15668691|ref|NP_247490.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474788|sp|Q57934|Y514_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514
 gi|1591217|gb|AAB98503.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 250

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C+E CP++   +  + + I+ D+CI CG C   CP +AIK
Sbjct: 200 CVGCLV--CIEECPINAIDQDGDKVKINKDKCILCGRCVDVCPTNAIK 245



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          Y+    CI C    C + CPVD   + +      I  D+C+ C +C   CPV AI 
Sbjct: 41 YINETKCIRCNL--CYKECPVDAIEKAKVKKSAKIIEDKCVKCEICAQTCPVGAIY 94



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-------HPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C EVCP  C   E E    I         + C+ C VC  ECP++AI
Sbjct: 158 VNLDLCMGCG--ACAEVCPKKCIKVERELGEVIKTRDIEVDKNLCVGCLVCIEECPINAI 215

Query: 56  KPD 58
             D
Sbjct: 216 DQD 218



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CI C    C   CP +         + ++ D C+ CG C   CP   IK + E G 
Sbjct: 133 CIKCG--ICARFCPTNAIKAVRRKSIEVNLDLCMGCGACAEVCPKKCIKVERELGE 186



 Score = 37.4 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 28/92 (30%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--------------------------HP 37
           ++ + C+ C+   C + CPV   Y  E    I                            
Sbjct: 73  IIEDKCVKCE--ICAQTCPVGAIYVIEGRAEIEDSEVHYTIKEKSIPHRKIRLKKYELDE 130

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + CI CG+C   CP +AIK      +E+ L +
Sbjct: 131 NTCIKCGICARFCPTNAIKAVRRKSIEVNLDL 162



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I+  +CI C +C  ECPVDAI+
Sbjct: 40 LYINETKCIRCNLCYKECPVDAIE 63


>gi|83952617|ref|ZP_00961347.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83835752|gb|EAP75051.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 264

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRTEDGIVLVNESDCIGCGLCAWACPYGARELDQAEG 143


>gi|332795922|ref|YP_004457422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332693657|gb|AEE93124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
          Length = 419

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 4   VVTENCILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+  NC+     + CV  CP       E  + I  ++C  CG+C   CPV AI
Sbjct: 104 VINSNCLSSLGCNQCVTSCPQKAMSIVEGKVVIDENKCTYCGLCAASCPVGAI 156



 Score = 40.1 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +NC LC    C+  CP         +   F+   P +C+ C  C   C  DAI
Sbjct: 282 DNCTLCG--ACIRKCPTRSLKYNIKDNNVFIEFTPSKCVGCNKCVNVCEEDAI 332


>gi|323204947|gb|EFZ89933.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323222456|gb|EGA06828.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 130

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++ 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|313765371|gb|EFS36735.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL013PA1]
 gi|313815223|gb|EFS52937.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL059PA1]
 gi|313828528|gb|EFS66242.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL063PA2]
 gi|314915985|gb|EFS79816.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL005PA4]
 gi|314916891|gb|EFS80722.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL050PA1]
 gi|314921532|gb|EFS85363.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL050PA3]
 gi|314931144|gb|EFS94975.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL067PA1]
 gi|314954799|gb|EFS99205.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL027PA1]
 gi|314958965|gb|EFT03067.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL002PA1]
 gi|315099767|gb|EFT71743.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL059PA2]
 gi|315101927|gb|EFT73903.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL046PA1]
 gi|315110353|gb|EFT82329.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL030PA2]
 gi|327454802|gb|EGF01457.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL087PA3]
 gi|327455657|gb|EGF02312.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL083PA2]
 gi|328755857|gb|EGF69473.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL087PA1]
 gi|328756638|gb|EGF70254.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL025PA2]
          Length = 213

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +C  C+   C++ CP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSCNHCEDPICMKACPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|225850220|ref|YP_002730454.1| 4Fe-4S binding domain protein [Persephonella marina EX-H1]
 gi|225646094|gb|ACO04280.1| 4Fe-4S binding domain protein [Persephonella marina EX-H1]
          Length = 360

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 8  NCILCKHTD-----CVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC    + D     CV+VCPV D  Y  E  L I  ++C++CG C   CP +A
Sbjct: 12 NCTHVYYRDSSCSKCVDVCPVKDAIYFDEGKLKIDDEKCVNCGACFGICPTEA 64



 Score = 43.2 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C  + C  +CP      G + L I   P  C+ C +C   CP + +  + +   + +
Sbjct: 254 CTNC--SVCYNICPTGALKPGRDRLQILFEPSLCVKCKICHESCPENCLHLEEKLSFDTF 311

Query: 67  L 67
           L
Sbjct: 312 L 312


>gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
 gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
          Length = 656

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V++ E C  C  + C   CPV     + +    I    CI CG CE  C   AI  +
Sbjct: 600 FVISPERCKGC--SKCARNCPVGAISGQIKKPYVIDDSICIKCGACESACAFHAIHIE 655



 Score = 40.5 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 10/45 (22%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C   +C  +              I P+ C  C  C   CPV AI
Sbjct: 588 KCAAKNCTAL----------RRFVISPERCKGCSKCARNCPVGAI 622


>gi|322433771|ref|YP_004215983.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidobacterium sp. MP5ACTX9]
 gi|321161498|gb|ADW67203.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidobacterium sp. MP5ACTX9]
          Length = 529

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C   DC++ CPVD + +   + + +H  D CI C  C   CP    + + E G
Sbjct: 105 CNHCLDADCLKGCPVDAYTKDPVSGIVLHSADACIGCSYCVWNCPYSVPQYNPERG 160


>gi|260597687|ref|YP_003210258.1| formate hydrogenlyase subunit 2 [Cronobacter turicensis z3032]
 gi|260216864|emb|CBA30397.1| Formate hydrogenlyase subunit 2 [Cronobacter turicensis z3032]
          Length = 243

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C  C+   C +VCPV+        + ++   C+ C +C   CP  AI+ 
Sbjct: 91  QLCHHCEDAPCAQVCPVNAITREAGAIQLNESLCVSCKLCGIACPFGAIEF 141


>gi|223038486|ref|ZP_03608780.1| ubiquinol CytoChrome c oxidoreductase, cytochrome b subunit
           [Campylobacter rectus RM3267]
 gi|222880343|gb|EEF15430.1| ubiquinol CytoChrome c oxidoreductase, cytochrome b subunit
           [Campylobacter rectus RM3267]
          Length = 193

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
            +T +C  C    C++VCPV  + + EN +   +H D+CI CG C   CP  +I
Sbjct: 64  FITHSCHHCDEPACMDVCPVGAYIKLENGIVQPLH-DKCIGCGYCIVACPYGSI 116


>gi|303246144|ref|ZP_07332425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302492540|gb|EFL52411.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 242

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   C+ VCPV   Y+  + +  I   +C+ CG C   CP  A
Sbjct: 92  CNHCEKPACIPVCPVKATYQRPDGIVVIDGTKCLGCGFCVQACPYGA 138


>gi|190192132|dbj|BAG48267.1| 4Fe-4S type iron-sulfur protein [Microcystis aeruginosa NIES-843]
          Length = 74

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT  C      DCV  CPV C + G        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHSIVTGTCEGV--ADCVSACPVACIHPGPGKNVKGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P   P L+ 
Sbjct: 59 EGAILPQERPDLQK 72


>gi|325832002|ref|ZP_08165099.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 family
           protein [Eggerthella sp. HGA1]
 gi|325486323|gb|EGC88775.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 family
           protein [Eggerthella sp. HGA1]
          Length = 263

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            C+ C++ +CV VCP     + ++ + I   D CI CG C   CP  A
Sbjct: 58  ACMHCENPECVSVCPTGASQKLDDGVVIVDYDACITCGYCMSACPYGA 105


>gi|192358977|ref|YP_001981503.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
 gi|190685142|gb|ACE82820.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
          Length = 223

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            ++  + CI C  T C++ CP+D        +  I  DEC  C +C   CPVD I+    
Sbjct: 115 AFIREDECIGC--TKCIQACPMDAILGAAKQMHTIIADECTGCDLCVEPCPVDCIEMIPV 172

Query: 60  EPGLELW 66
            PGL+ W
Sbjct: 173 VPGLDTW 179


>gi|171914161|ref|ZP_02929631.1| putative anaerobic reductase component [Verrucomicrobium spinosum
           DSM 4136]
          Length = 534

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 2   TYV--VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIH-PDECIDCGVCEPECPVDAIKP 57
            YV  VT  C  C    C E CPV  + + E   +  H  D+CI C  C  +CP D  K 
Sbjct: 103 PYVQTVTTACHHCTDPACAEGCPVLAYEKDEETGIVRHLDDQCIGCSYCILKCPYDVPKY 162


>gi|168822252|ref|ZP_02834252.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197251728|ref|YP_002146655.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204927473|ref|ZP_03218674.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238913210|ref|ZP_04657047.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|197215431|gb|ACH52828.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204322815|gb|EDZ08011.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205341348|gb|EDZ28112.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 244

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|148652690|ref|YP_001279783.1| electron transport complex, RnfABCDGE type subunit B [Psychrobacter
           sp. PRwf-1]
 gi|148571774|gb|ABQ93833.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter sp. PRwf-1]
          Length = 275

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C+  CPVD        +  I  D C  C +C   CPVD I
Sbjct: 113 DDCIGC--TKCIPACPVDAIIGTGKHMHTIFTDLCTGCELCLAPCPVDCI 160



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 22  PVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PVD       E    I  D+CI C  C P CPVDAI
Sbjct: 95  PVDAHTGRPTEVRAIIREDDCIGCTKCIPACPVDAI 130


>gi|90412117|ref|ZP_01220123.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
 gi|90326841|gb|EAS43226.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
          Length = 192

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEMIPV 163

Query: 58  -DTEPGLEL 65
            DT    + 
Sbjct: 164 KDTPESWKW 172


>gi|255655479|ref|ZP_05400888.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451471|ref|ZP_06893208.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880180|ref|ZP_06904146.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259738|gb|EFH06596.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428769|gb|EFH14650.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 424

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPEC 50
           E+C+ C    C+  CP+D       +G+ ++ I  D C+ CGVC   C
Sbjct: 293 ESCVKCG--KCIAACPIDAISKVKEDGKEYIKIDEDRCLGCGVCVRNC 338



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+ + C+ CG C   CP+DAI    E G + ++KI+ +
Sbjct: 290 INHESCVKCGKCIAACPIDAISKVKEDG-KEYIKIDED 326


>gi|75910458|ref|YP_324754.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75704183|gb|ABA23859.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 531

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVDAI 55
          M Y +T  CI C   +CV +CP       +    I P  C +C       C   CP ++ 
Sbjct: 1  MPYAITNRCIQC--ANCVPLCPQGAIKVIDGDYWIDPSLCNNCEDYLEPQCVICCPANSP 58

Query: 56 KPDTE 60
           P   
Sbjct: 59 IPSQP 63


>gi|251790305|ref|YP_003005026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dickeya zeae Ech1591]
 gi|247538926|gb|ACT07547.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 180

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIQCRHCEDAPCANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGA 102


>gi|160899678|ref|YP_001565260.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160365262|gb|ABX36875.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
           acidovorans SPH-1]
          Length = 281

 Score = 55.9 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++  + +  +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 137 CNHCDNPPCVPVCPVQATFQRSDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 195


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V +NC  C    C  VCP      E +    I   +CI CG C  +C  +AI
Sbjct: 544 IVADNCKGCG--ACARVCPASAITGEKKEAHVIDTSKCIKCGSCIEKCKFNAI 594



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  CG C   CP  AI  + +   
Sbjct: 544 IVADNCKGCGACARVCPASAITGEKKEAH 572


>gi|262279872|ref|ZP_06057657.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260223|gb|EEY78956.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 263

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 87  IREDECIGCTKCISACPVDAI 107


>gi|145637713|ref|ZP_01793366.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittHH]
 gi|145641064|ref|ZP_01796645.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|148827107|ref|YP_001291860.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittGG]
 gi|145269115|gb|EDK09065.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittHH]
 gi|145274225|gb|EDK14090.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.4-21]
 gi|148718349|gb|ABQ99476.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittGG]
          Length = 218

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP D I
Sbjct: 103 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCI 155



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E    I  + CI C  C   CPVDAI
Sbjct: 100 EKVAFIDENMCIGCTKCIQACPVDAI 125


>gi|37521054|ref|NP_924431.1| ferredoxin like protein [Gloeobacter violaceus PCC 7421]
 gi|35212050|dbj|BAC89426.1| ferredoxin like protein [Gloeobacter violaceus PCC 7421]
          Length = 75

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV+ CPV C  +G        N+  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTDVCEGI--ADCVDACPVSCIDQGPGKNAKGTNWYWIDFATCIDCGICLQVCPV 58

Query: 53 -DAIKPDTEPGLEL 65
            AI P+ +P L+ 
Sbjct: 59 NGAILPEEKPELQK 72


>gi|327309967|ref|YP_004336864.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20]
 gi|326946446|gb|AEA11552.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20]
          Length = 441

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
           CV+VCP       +  +++ P +C +CG+C   CP  A+           ++I +  A  
Sbjct: 119 CVDVCPTGALKLADRSVSVDPSKCTECGLCISSCPTGALSAPGADD----VEIAAALAKA 174

Query: 77  WPNITTK 83
             + T++
Sbjct: 175 RLHGTSR 181



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C LC    C   CP   F          L ++P +C+ CG CE  CP  AI
Sbjct: 313 CSLCGV--CFAKCPQRAFDVSRTGDAIKLTLNPLKCVGCGYCEEVCPEKAI 361


>gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8]
 gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8]
          Length = 378

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C  C  T C   CP        +N   I  D+CI CGVC   C   AI
Sbjct: 325 IVADKCKGC--TLCARNCPAGAITGTVKNPHVIDTDKCIKCGVCMSNCKFGAI 375



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I  D+C  C +C   CP  AI
Sbjct: 322 QYEIVADKCKGCTLCARNCPAGAI 345


>gi|330506892|ref|YP_004383320.1| sulfite reductase subunit beta [Methanosaeta concilii GP-6]
 gi|328927700|gb|AEB67502.1| sulfite reductase, beta subunit [Methanosaeta concilii GP-6]
          Length = 286

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    CVEVC V      E    I  D+C+ CG C   CP  A
Sbjct: 167 EKCTGCG--KCVEVCKVGATKIVEEKAIIDYDKCVRCGRCVAVCPEAA 212



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 14/87 (16%)

Query: 17  CVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           C   C    F E    G     I  ++C  CG C   C V A K   E  +  + K    
Sbjct: 142 CAFPCTRPQFNEIGLMGRVLPQIDLEKCTGCGKCVEVCKVGATKIVEEKAIIDYDKC--- 198

Query: 73  YATQWPNITTKKESL-PSAAKMDGVKQ 98
                     +  ++ P AAK    K 
Sbjct: 199 ------VRCGRCVAVCPEAAKYSAEKG 219


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57
           +TY +    C  C    CV  CPV     G       I+ D CI CG+C   C  DA+K 
Sbjct: 560 LTYTIDPNECTSCL--ACVRECPVGAIS-GPKKEPQVINQDLCIKCGLCHDVCQFDAVKV 616

Query: 58  D 58
           +
Sbjct: 617 E 617



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I P+EC  C  C  ECPV AI    +   
Sbjct: 562 YTIDPNECTSCLACVRECPVGAISGPKKEPQ 592


>gi|256830011|ref|YP_003158739.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579187|gb|ACU90323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 185

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKP 57
            C  C++  C+ VCPV+ + + E+ + +H  ++CI CG C   CP  A   
Sbjct: 58  ACNHCENPTCLNVCPVEAYTKREDGVVVHHQEKCIGCGNCIRSCPYGAPVY 108


>gi|212637708|ref|YP_002314233.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559192|gb|ACJ31646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 559

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 4   VVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V +E C   ++ +     C+  CP D     E  + I P  C   G C   CP  AI  D
Sbjct: 181 VNSEICAHSRNGNEGCNRCLNFCPADAIASVEKKIEIDPYLCHGAGSCTNACPTGAISYD 240

Query: 59  TEPGLELWLKIN 70
                 +   +N
Sbjct: 241 LPTPQSMHTYLN 252



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           V TE+C LC    CV  CP     +G +  A+H    +C+ CG+C+  CP   I
Sbjct: 424 VNTESCTLC--MSCVATCPTGALTDGGDLPALHFVEQDCVQCGLCDAGCPEKVI 475


>gi|168239267|ref|ZP_02664325.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734836|ref|YP_002114400.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710338|gb|ACF89559.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288003|gb|EDY27390.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|322615129|gb|EFY12052.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619972|gb|EFY16845.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622283|gb|EFY19128.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627806|gb|EFY24596.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633095|gb|EFY29838.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636659|gb|EFY33362.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641147|gb|EFY37789.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644916|gb|EFY41449.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650245|gb|EFY46659.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655820|gb|EFY52122.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660146|gb|EFY56385.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665288|gb|EFY61476.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669545|gb|EFY65693.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673471|gb|EFY69573.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677399|gb|EFY73463.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679938|gb|EFY75977.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687410|gb|EFY83382.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192363|gb|EFZ77594.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198618|gb|EFZ83719.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203099|gb|EFZ88130.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208664|gb|EFZ93602.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213821|gb|EFZ98599.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217641|gb|EGA02356.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218989|gb|EGA03499.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223656|gb|EGA07966.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229443|gb|EGA13566.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232666|gb|EGA16762.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240296|gb|EGA24340.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242716|gb|EGA26737.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245927|gb|EGA29915.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252504|gb|EGA36348.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259120|gb|EGA42765.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260073|gb|EGA43698.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267163|gb|EGA50648.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271514|gb|EGA54935.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 244

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|168233577|ref|ZP_02658635.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470968|ref|ZP_03076952.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457332|gb|EDX46171.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332342|gb|EDZ19106.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 244

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|297619598|ref|YP_003707703.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297378575|gb|ADI36730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 173

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C    C E+CPV+        + ++ + CI CG+C   CP  AI 
Sbjct: 45 CQHCASAPCGEICPVNAIDVNNGVVHLNEELCIGCGLCALACPFGAIF 92


>gi|310825956|ref|YP_003958313.1| hypothetical protein ELI_0331 [Eubacterium limosum KIST612]
 gi|308737690|gb|ADO35350.1| hypothetical protein ELI_0331 [Eubacterium limosum KIST612]
          Length = 139

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +TE CI C  T C   CPV     E +    ++   CIDCGVC   CP  AI
Sbjct: 1  MAYTITEKCIGC--TICARNCPVMAITGEKKKQHVVNDKRCIDCGVCGRSCPQAAI 54



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 17  CVEVCPVDCF------YEGENFLAIH---PDECIDCGVCEPECPVDAIKPDT 59
           CV+ C   C       ++G+  +      P  C+ CG+CE  CP+ AI+ + 
Sbjct: 86  CVDGCRFGCLAISMPAFKGDIRVYADLVKPKACVGCGLCESLCPLSAIRMEV 137


>gi|295100160|emb|CBK89249.1| glycyl-radical enzyme activating protein family [Eubacterium
          cylindroides T2-87]
          Length = 300

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C+ C    CV  CP          L    D CI C  CE  CP  AI
Sbjct: 52 EKCVRCG--TCVRNCPQHAIKIENFKLVFDRDACIHCKTCENNCPAGAI 98



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 21 CPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CP+ C         E +  L  + ++C+ CG C   CP  AIK +
Sbjct: 28 CPLRCPWCANPESQEIKPQLMYNEEKCVRCGTCVRNCPQHAIKIE 72


>gi|256826549|ref|YP_003150508.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium
          curtum DSM 15641]
 gi|256582692|gb|ACU93826.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium
          curtum DSM 15641]
          Length = 199

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          C  C    C+ VCPV+        + ++   CI C +C   CP  AI P
Sbjct: 51 CHHCAGAPCLAVCPVNAITRENGSIQVNEQTCIGCKLCGIVCPFGAIHP 99



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 30 ENFLAIHPDECIDCGVCEPEC 50
            F+AI+PD+CI CG C   C
Sbjct: 2  NRFIAINPDKCIGCGTCRAAC 22


>gi|219852244|ref|YP_002466676.1| nitroreductase [Methanosphaerula palustris E1-9c]
 gi|219546503|gb|ACL16953.1| nitroreductase [Methanosphaerula palustris E1-9c]
          Length = 272

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 2  TYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKP 57
          T V+ E NC  C  + C  +CP     E ++  +I P+    CI CG CE  CP  A+K 
Sbjct: 3  TIVIDETNCTHC--STCATICPSGIIEETDSIPSIRPENEGSCIACGQCEATCPTGALKV 60

Query: 58 DTEPGL 63
              G 
Sbjct: 61 QDPDGQ 66


>gi|322659222|gb|EFY55471.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|323243093|gb|EGA27113.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 142

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++ 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSA 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|319942524|ref|ZP_08016834.1| hypothetical protein HMPREF9464_02053 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803927|gb|EFW00845.1| hypothetical protein HMPREF9464_02053 [Sutterella wadsworthensis
           3_1_45B]
          Length = 211

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C    C+ VCPV   + G      +   +CI C +CE  CP  A K +       +
Sbjct: 55  SCMHCDKPACMPVCPVKAIHRGPAGEVLVDQKKCIGCRMCERACPYGAPKFNASGETNYF 114


>gi|258405501|ref|YP_003198243.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797728|gb|ACV68665.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
          Length = 793

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----GENF-LAIHPDECIDCGVCEPECP 51
            C  C    C+E+CP          GE+F +   P++CI CG C   CP
Sbjct: 734 ACRDCGL--CIEICPQTAINRRQLSGEDFEMVADPEKCIGCGFCAQACP 780


>gi|159027686|emb|CAO89551.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 74

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEG-------ENFLAIHPDECIDCGVCEPECPV 52
          M + +VT  C      DCV  CPV C + G        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHSIVTGICEGV--ADCVSACPVACIHPGLGKNVKGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI P+  P L+ 
Sbjct: 59 EGAILPEERPDLQK 72


>gi|158520577|ref|YP_001528447.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
 gi|158509403|gb|ABW66370.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
          Length = 589

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-----PDT 59
           VT+ C+ C    CVE C        EN  A+H D+C  CG CE  CP  A++     P+ 
Sbjct: 514 VTDACVGCG--TCVEFCGFGAITI-ENGKAVHNDQCRGCGRCETRCPNHAVRITINNPNV 570

Query: 60  EPGLELWLK 68
              ++  ++
Sbjct: 571 TEDVKKRIE 579


>gi|20089906|ref|NP_615981.1| hypothetical protein MA1031 [Methanosarcina acetivorans C2A]
 gi|19914861|gb|AAM04461.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 377

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++ T NC LCK   CV  C V    E  + L I+ ++CI C  C   CP DA++
Sbjct: 310 PFINTSNCKLCK--ACVLNCSVHAIEETGSALKINQEKCIQCYCCRELCPSDAVE 362


>gi|307611754|emb|CBX01462.1| hypothetical protein LPW_31501 [Legionella pneumophila 130b]
          Length = 204

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  I   EC  CG+C   CPVD I+
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIE 130



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 79 IKEDECIGCTKCIKACPVDAI 99



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  ++T  C  C    CV+ CPVDC   
Sbjct: 106 MHAIITHECTGCGL--CVDPCPVDCIEM 131


>gi|283832974|ref|ZP_06352715.1| putative polyferredoxin [Citrobacter youngae ATCC 29220]
 gi|291071581|gb|EFE09690.1| putative polyferredoxin [Citrobacter youngae ATCC 29220]
          Length = 290

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            CV +CPV+          I+ DECI CG C   CPVDA++ + +P    +
Sbjct: 29 QACVSICPVNAISLSPAGPEINDDECIRCGNCLFACPVDALQ-NLQPATRKY 79



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T  C+LC    C   CP +     +         C  C  CE  CPV +I     PG +
Sbjct: 192 TLQCMLCG--ACSRACPEEAICFTDGAFEFSSSICTGCLSCEAVCPVQSIYIKRLPGEK 248


>gi|62179976|ref|YP_216393.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614201|ref|YP_001588166.1| hypothetical protein SPAB_01943 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551649|ref|ZP_02345403.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167995015|ref|ZP_02576105.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168240895|ref|ZP_02665827.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168463207|ref|ZP_02697138.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194447767|ref|YP_002045390.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|198245067|ref|YP_002215743.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389577|ref|ZP_03216188.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|213161804|ref|ZP_03347514.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428559|ref|ZP_03361309.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583929|ref|ZP_03365755.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647222|ref|ZP_03377275.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854959|ref|ZP_03383199.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827395|ref|ZP_06546007.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|62127609|gb|AAX65312.1| Tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161363565|gb|ABX67333.1| hypothetical protein SPAB_01943 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406071|gb|ACF66290.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|195634294|gb|EDX52646.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197939583|gb|ACH76916.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602022|gb|EDZ00568.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205323655|gb|EDZ11494.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327218|gb|EDZ13982.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339348|gb|EDZ26112.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|312912370|dbj|BAJ36344.1| tetrathionate reductase complex subunit B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224011|gb|EFX49074.1| Tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322714443|gb|EFZ06014.1| tetrathionate reductase complex, subunit B [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 244

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|330447721|ref|ZP_08311369.1| dimethylsulfoxide reductase, chain B [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491912|dbj|GAA05866.1| dimethylsulfoxide reductase, chain B [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 205

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C    C +VCP    ++ +   F+ +  ++CI C  C   CP  A + + 
Sbjct: 59  SYYVSIACNHCTKPACTKVCPSGAMHKRKEDGFVVVDTEKCIGCQYCGMACPYGAPQYNA 118

Query: 60  EPGL 63
           E G 
Sbjct: 119 EKGH 122


>gi|326624573|gb|EGE30918.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
          str. 3246]
          Length = 162

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 39 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 91


>gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 594

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           TY +V E C  C  T C   CPV+           I PD C+ CG+C   C  +AI
Sbjct: 538 TYEIVPETCTGC--TVCARNCPVNAITGERRQPHKIDPDICVRCGICMQVCNFNAI 591



 Score = 40.1 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             I P+ C  C VC   CPV+AI  +     ++   I
Sbjct: 539 YEIVPETCTGCTVCARNCPVNAITGERRQPHKIDPDI 575


>gi|297559006|ref|YP_003677980.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296843454|gb|ADH65474.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 294

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP   I    E G
Sbjct: 115 SDVCKHCTSAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDKREEDG 172


>gi|322420686|ref|YP_004199909.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320127073|gb|ADW14633.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 260

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+  + +  +  + CI CG C   CP  
Sbjct: 126 AFFVPKLCNQCDNPPCVQVCPVGATYQTADGVVLVDREWCIGCGYCIMGCPYG 178


>gi|78044396|ref|YP_359648.1| formate dehydrogenase-O, iron-sulfur subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996511|gb|ABB15410.1| formate dehydrogenase-O, iron-sulfur subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 260

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C    C + CP D  Y  +    +   D CI C  C+  CP +  + DT+
Sbjct: 70  QQCFHCGDAACEKACPEDAIYHTKEGAVVRDYDRCIGCDYCQRACPFNIPRIDTQ 124


>gi|298244772|ref|ZP_06968578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
 gi|297552253|gb|EFH86118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter
           racemifer DSM 44963]
          Length = 263

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C+E CP       E   + + PD C  CG C P CP   +
Sbjct: 76  SDVCKHCTHAGCMEACPTGAIVRNEFGDVYVQPDICNGCGYCVPSCPFGVV 126


>gi|257064870|ref|YP_003144542.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792523|gb|ACV23193.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 296

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    CV+VCP    ++ E    ++ + D+CI C  C   CP D  + 
Sbjct: 79  ACMHCTDAGCVQVCPSGALFKDEETGLVSYNKDKCIGCKYCAAACPFDVPRH 130


>gi|304438798|ref|ZP_07398725.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372721|gb|EFM26300.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 315

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C + CP D  +  +N  AI   +CI+CG+C   CP  AI  +   
Sbjct: 225 CIGCG--ICEKKCPKDAIHVTDNLAAIDYTKCINCGICVANCPTGAIFCEYPE 275


>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C E CPV       E    I P+ C  CG+CE ECP + I
Sbjct: 550 EACEACGV--CKEECPVSAITGSKEEGYEIDPEICESCGICEEECPFEVI 597



 Score = 40.9 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           I  + C  CGVC+ ECPV AI    E G E+  +I
Sbjct: 547 IDEEACEACGVCKEECPVSAITGSKEEGYEIDPEI 581


>gi|261885847|ref|ZP_06009886.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 216

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C  C    C  VCP         ++ +H   CI C +C   CP  AI  D+
Sbjct: 49  VMPNQCRQCDDAPCALVCPSSALRNENGYVEMHEQLCIGCALCVNACPYGAIHLDS 104


>gi|238762337|ref|ZP_04623308.1| Hydrogenase-2 operon protein hybA [Yersinia kristensenii ATCC
           33638]
 gi|238699322|gb|EEP92068.1| Hydrogenase-2 operon protein hybA [Yersinia kristensenii ATCC
           33638]
          Length = 329

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +  +PD C  C  C   CP +  K D
Sbjct: 100 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYNPDVCTGCRYCMVGCPFNVPKYD 155


>gi|171463232|ref|YP_001797345.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192770|gb|ACB43731.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 228

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT- 59
            ++  + CI C  T C++ CPVD        +  +  D C  C +C P CPVD I     
Sbjct: 88  AFIDPKKCIGC--TLCIQACPVDAIVGASKQMHVVLSDWCTGCNLCIPPCPVDCISMIDV 145

Query: 60  ---EPGLELWLKINSEYATQWPNITTKK 84
              + G + W +  +++A +  +   K+
Sbjct: 146 TGGQTGWDAWSQDLADFARKRYHNREKR 173



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 24  DCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +C  E    +  I P +CI C +C   CPVDAI
Sbjct: 78  ECGLERPRAVAFIDPKKCIGCTLCIQACPVDAI 110


>gi|163858290|ref|YP_001632588.1| ferredoxin-like protein in nif region [Bordetella petrii DSM
          12804]
 gi|163262018|emb|CAP44320.1| Ferredoxin-like protein in nif region [Bordetella petrii]
          Length = 83

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE CI C    C   CP +    G  +  I PD C +C        C+  CPV+ 
Sbjct: 1  MALTITEECINCDV--CEPQCPNEAISMGPEYYVIDPDRCTECVGHHDEPQCKVVCPVEC 58

Query: 55 IK 56
          I+
Sbjct: 59 IE 60


>gi|91773531|ref|YP_566223.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
          DSM 6242]
 gi|91712546|gb|ABE52473.1| 4Fe-4S ferredoxin, iron-sulfur protein [Methanococcoides burtonii
          DSM 6242]
          Length = 58

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + C+ C    CV+ CP +    +GEN   ++ DECIDCG C   CP DAI  +
Sbjct: 8  DECVGCG--TCVDDCPSEAISMDGENIAVVNADECIDCGACVDSCPTDAISME 58



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTE 60
           I+ DEC+ CG C  +CP +AI  D E
Sbjct: 4  VINRDECVGCGTCVDDCPSEAISMDGE 30


>gi|77360047|ref|YP_339622.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874958|emb|CAI86179.1| Electron transport complex protein rnfB [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 184

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--KPD 58
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I   P 
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCIDMLPV 164

Query: 59  TEPGLELWLKINS 71
            E       ++N+
Sbjct: 165 AETKQNWKWQLNA 177


>gi|110634782|ref|YP_674990.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285766|gb|ABG63825.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 680

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+++CP        N +AI  + C  CG C   CP  A         
Sbjct: 288 TRCLDLCPTGAITPAGNHVAIDAEICAGCGNCAAVCPTGAAAYAIPDAE 336



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    CV  CP     + E+   L      C+ CG+C   CP   I    + 
Sbjct: 519 VDVEGCTLCL--SCVSACPTGALSDSEDRPALYFSESACVQCGLCAATCPEQVITLVPQV 576

Query: 62  GLELW 66
             + W
Sbjct: 577 DFQAW 581


>gi|323700004|ref|ZP_08111916.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio sp. ND132]
 gi|323459936|gb|EGB15801.1| Fe-S-cluster-containing hydrogenase components 1-like
           [Desulfovibrio desulfuricans ND132]
          Length = 249

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            C+ C++  CV  CP    Y+      + I    CI CG C P CP DA
Sbjct: 61  ACMHCENPTCVTACPTGATYKDPETGVVVIDETLCIGCGNCIPACPYDA 109


>gi|255261730|ref|ZP_05341072.1| 4Fe-4S binding domain protein [Thalassiobium sp. R2A62]
 gi|255104065|gb|EET46739.1| 4Fe-4S binding domain protein [Thalassiobium sp. R2A62]
          Length = 252

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D E G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQEEG 137


>gi|157375933|ref|YP_001474533.1| aspartate carbamoyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318307|gb|ABV37405.1| aspartate carbamoyltransferase [Shewanella sediminis HAW-EB3]
          Length = 686

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C    C++ CP   + +  E    +  P+ C  CG C   CP +A + D
Sbjct: 160 ISMACNHCDDPVCLKGCPTRAYTKHAEYGAVLQDPETCFGCGYCTWVCPYNAPQLD 215


>gi|86609930|ref|YP_478692.1| iron-sulfur cluster-binding protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86558472|gb|ABD03429.1| iron-sulfur cluster-binding protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
          Length = 75

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCVE CPV C + G+       ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTDICEGV--ADCVEACPVACIHPGDTKNAKGTDYFWIEFSTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + AI P+ +P L+
Sbjct: 59 EGAILPEEKPHLQ 71


>gi|84385415|ref|ZP_00988447.1| tetrathionate reductase, subunit B [Vibrio splendidus 12B01]
 gi|84380012|gb|EAP96863.1| tetrathionate reductase, subunit B [Vibrio splendidus 12B01]
          Length = 278

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  C++VCPV   ++ E+ +  +  + C+ C  C   CP DA
Sbjct: 112 CNHCDNAPCIKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDA 158


>gi|226329169|ref|ZP_03804687.1| hypothetical protein PROPEN_03072 [Proteus penneri ATCC 35198]
 gi|225202355|gb|EEG84709.1| hypothetical protein PROPEN_03072 [Proteus penneri ATCC 35198]
          Length = 337

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            + + C+ C   +CV VCPV    +      +  H D C  C  C   CP +  K D + 
Sbjct: 113 FIKKQCMHCVDANCVSVCPVSALTKDPKTGIVHYHADICTGCRYCMVGCPYNIPKYDYDD 172

Query: 62  GL 63
             
Sbjct: 173 PF 174


>gi|213861424|ref|ZP_03385894.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 133

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|297619597|ref|YP_003707702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297378574|gb|ADI36729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 139

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C+   C++VCP +   +  + + +  D+CI C +C   CP+ AI+ D
Sbjct: 35 CMHCESAPCIQVCPENALKKVGDRVILDNDKCIGCSLCTEVCPIGAIRID 84


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V  E CI C    C + C V   Y        I P++C+ C  C   CP +AI
Sbjct: 571 VDEERCIACGL--CAKACTVQAIYGEPKKPYRIDPEKCVKCAACVARCPRNAI 621



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +  + CI CG+C   C V AI  + +    
Sbjct: 571 VDEERCIACGLCAKACTVQAIYGEPKKPYR 600


>gi|146303970|ref|YP_001191286.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Metallosphaera sedula DSM 5348]
 gi|145702220|gb|ABP95362.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera sedula DSM 5348]
          Length = 362

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           + CI C    C   CP  CF +       I  D C+ CG+C   CPV + I    E  L 
Sbjct: 267 DACIKCDL--CWVYCPDGCFDKTPEGYYDIAYDYCVGCGICAEVCPVKNCIVMVDEKRLP 324

Query: 65  LWL------KINSEYATQW 77
            +       K N     +W
Sbjct: 325 DYTRPYSMWKANKAEYKKW 343


>gi|73540750|ref|YP_295270.1| ferredoxin [Ralstonia eutropha JMP134]
 gi|72118163|gb|AAZ60426.1| Electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           eutropha JMP134]
          Length = 248

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEPGL 63
           CI C  T C++ CPVD        +  I P+ C  C +C P CPVD I          G 
Sbjct: 87  CIGC--TLCIQACPVDAIAGAAKQMHTIIPELCTGCDLCVPPCPVDCIDMVPVTGERTGW 144

Query: 64  ELWLKINSEYA 74
           + W +  ++ A
Sbjct: 145 DAWTQEQADAA 155



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 82  IDESLCIGCTLCIQACPVDAI 102


>gi|312897705|ref|ZP_07757122.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
 gi|310621338|gb|EFQ04881.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
          Length = 175

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C+E CP +    GE+ + +  D C  CG C   CP D I
Sbjct: 59  CRQCPKPKCMEACPFNAISMGEDSVILDQDICKGCGKCAKACPFDGI 105


>gi|307720609|ref|YP_003891749.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Sulfurimonas autotrophica DSM 16294]
 gi|306978702|gb|ADN08737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sulfurimonas autotrophica DSM 16294]
          Length = 83

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ + CI C    C E CP     EG+    I PD C +C        C   CPVD 
Sbjct: 1  MALIINDECIACD--ACREECPTLAIEEGDPIYYIDPDRCTECVGIYDEPACISVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDKD 64


>gi|149908584|ref|ZP_01897246.1| tetrathionate reductase, subunit B [Moritella sp. PE36]
 gi|149808418|gb|EDM68355.1| tetrathionate reductase, subunit B [Moritella sp. PE36]
          Length = 257

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCPV   ++ E+ +  +  + C+ C  C   CP DA
Sbjct: 111 CNHCENPPCVKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDA 157


>gi|78067137|ref|YP_369906.1| ferredoxin [Burkholderia sp. 383]
 gi|77967882|gb|ABB09262.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. 383]
          Length = 334

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 112 AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIIESLCTGCDLCVPPCPVDCIAMLPV 169

Query: 59  --TEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 170 TGERTGWDAWSQEQADAARE 189


>gi|34558205|ref|NP_908020.1| ferredoxin [Wolinella succinogenes DSM 1740]
 gi|34483924|emb|CAE10920.1| FERREDOXIN [Wolinella succinogenes]
          Length = 83

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++TE CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLMITEECIACD--ACREECPNEAIDEGDPTYMIDPDRCTECVGYYDEPSCVGACPVDA 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|16082047|ref|NP_394472.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related
           protein [Thermoplasma acidophilum DSM 1728]
 gi|10640327|emb|CAC12141.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related
           protein [Thermoplasma acidophilum]
          Length = 605

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KP 57
            YV +  C  C  T C +   CP        N  A   D CI CG C   CP +AI  K 
Sbjct: 538 AYVDSNRCTGC--TICYDFFTCP--SILPLSNKKATIDDSCIGCGACVEVCPFNAISVKG 593

Query: 58  DTEPGLELWLKINS 71
           +   G E     N+
Sbjct: 594 EKPAGWEE--AWNA 605


>gi|193214169|ref|YP_001995368.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroherpeton thalassium ATCC 35110]
 gi|193087646|gb|ACF12921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroherpeton thalassium ATCC 35110]
          Length = 81

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE+CI C    CV+ CP +     E+  AI+PD C +C        C   CP +A
Sbjct: 1  MALYITEDCISCGV--CVDECPNNAIDYAESGYAINPDLCTECVGDFDAPQCMENCPSEA 58

Query: 55 IKPD 58
          I+PD
Sbjct: 59 IQPD 62


>gi|218780883|ref|YP_002432201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762267|gb|ACL04733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 354

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E+C  C+   C+E C +      ++   I+ D CI CG+C   CP +AI
Sbjct: 277 EDCTGCE--TCLERCQMGAIDMKDDVAQINLDRCIGCGLCVTTCPTEAI 323


>gi|20094162|ref|NP_614009.1| Fe-S-cluster-containing hydrogenase component [Methanopyrus
          kandleri AV19]
 gi|19887178|gb|AAM01939.1| Fe-S-cluster-containing hydrogenase component [Methanopyrus
          kandleri AV19]
          Length = 167

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C  VCPV+   E  +   +  D C+ CG+C   CP  AI+
Sbjct: 45 CLQCDDAPCANVCPVNAIVEEGDSWIVTED-CVGCGLCAVACPFGAIE 91


>gi|307130305|ref|YP_003882321.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Dickeya
           dadantii 3937]
 gi|306527834|gb|ADM97764.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Dickeya
           dadantii 3937]
          Length = 180

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIQCRHCEDAPCANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGA 102


>gi|260576503|ref|ZP_05844492.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259021226|gb|EEW24533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 245

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++   CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCQDAPCVPVCPTGASYKRAEDGIVLVNAAACIGCGLCAWACPYGARELDAAAG 137


>gi|213650841|ref|ZP_03380894.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
          Length = 154

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|150377591|ref|YP_001314186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150032138|gb|ABR64253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 679

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  + C LC    CV  CP     + E    L      C+ CG+C   CP  AI    + 
Sbjct: 519 VNVDACTLCL--SCVSACPTGALSDSEERPALYFAESACVQCGLCAATCPEKAIALVPQL 576

Query: 62  GLELW 66
             + W
Sbjct: 577 DFQAW 581



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP 48
           T C+ +CP        + + I    C  CG C  
Sbjct: 288 TRCINLCPTGAIVPAGDHVVIDAHVCAGCGSCAA 321


>gi|312881025|ref|ZP_07740825.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
 gi|310784316|gb|EFQ24714.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
          Length = 576

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
          Y  T NC  C    C+  CPV      E    + P+ C+ CG+C   CP  A  I+ D
Sbjct: 8  YTQTNNCHDC--FKCLRQCPVKAIRLEEGHARVLPELCVSCGLCVEVCPAKAKCIRDD 63


>gi|300692030|ref|YP_003753025.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           PSI07]
 gi|299079090|emb|CBJ51752.2| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           PSI07]
          Length = 268

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E CI C  T C++ CPVD           +  D C  C +C   CPVD I          
Sbjct: 88  ERCIGC--TLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCIDMVSVTGERT 145

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 146 GWDAWSQAQADLAR 159



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I P+ CI C +C   CPVDAI
Sbjct: 84  VIDPERCIGCTLCIQACPVDAI 105


>gi|291278907|ref|YP_003495742.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
 gi|290753609|dbj|BAI79986.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
          Length = 260

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP D      N   IH ++CI+CG CE  CP  AI
Sbjct: 213 CIGC--RLCAKNCPEDAITVENNLAYIHAEKCINCGKCEEVCPTKAI 257



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 9   CI-LC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           CI  C     CV+ C  D    G+N +  +  ++C  CG+C   CP + I+
Sbjct: 134 CIYGCVGGGSCVKACNFDALKMGDNGIPVVDEEKCTACGLCVKACPRNLIE 184


>gi|51245676|ref|YP_065560.1| pyruvate formate-lyase activating enzyme [Desulfotalea psychrophila
           LSv54]
 gi|50876713|emb|CAG36553.1| related to pyruvate formate-lyase activating enzyme [Desulfotalea
           psychrophila LSv54]
          Length = 310

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVD--CFYEGENFLAIH-PDECIDCGVCEPECPVDA 54
           + CI C    CV VCPV       G     I+   ECI CG CE  C   A
Sbjct: 55  DRCIDCGD--CVPVCPVGIHRLLPGSKKHEINQKIECIGCGKCEAACKQGA 103



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
          D CIDCG C P CPV  I        +   +IN
Sbjct: 55 DRCIDCGDCVPVCPVG-IHRLLPGSKKH--EIN 84


>gi|238796067|ref|ZP_04639578.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
 gi|238720012|gb|EEQ11817.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
          Length = 693

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 68  CHHCEDAPCASTCPNGAIVEMNNSIQVIQEKCIGCKTCMIACPFG 112


>gi|332295968|ref|YP_004437891.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179071|gb|AEE14760.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 259

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C    CV+ CP    ++ EN +     ++CI CG C   CP  
Sbjct: 73  CFHCGEPACVKACPSGALFQAENGIVAFDVNKCIACGYCHSACPFG 118


>gi|320086134|emb|CBY95908.1| Uncharacterized ferredoxin-like protein ydhX [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 244

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|170077855|ref|YP_001734493.1| ferredoxin-like protein [Synechococcus sp. PCC 7002]
 gi|169885524|gb|ACA99237.1| ferredoxin-like protein [Synechococcus sp. PCC 7002]
          Length = 74

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCVE CPV C ++G        ++  I  D CIDCG+C   CPV
Sbjct: 1  MPHSIVTDVCEGI--ADCVEACPVACIHDGPGKNAKGTDWYWIDFDVCIDCGICIQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + AI P+    L+
Sbjct: 59 EGAIIPEENATLQ 71


>gi|24375838|ref|NP_719881.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
 gi|24350797|gb|AAN57325.1|AE015869_1 anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
          Length = 205

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            Y ++ +C  C +  CV+ CP    Y E    L  ++ D CI C  C   CP DA + D
Sbjct: 63  AYYISISCNHCSNPVCVKACPTGAMYKERSTGLVKVNQDLCIGCESCARACPYDAPQID 121


>gi|51244332|ref|YP_064216.1| iron-sulfur center hydrogenase [Desulfotalea psychrophila LSv54]
 gi|50875369|emb|CAG35209.1| related to iron-sulfur center hydrogenase [Desulfotalea
           psychrophila LSv54]
          Length = 202

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            YV  + C  C+   C  VC V+   + +  + +  ++C+ C  C   CP  A++
Sbjct: 60  AYVPVQ-CRHCEDAPCANVCQVEAISQRDGVIFVDEEKCMGCKTCMLACPFGAME 113


>gi|152965569|ref|YP_001361353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151360086|gb|ABS03089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 376

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 200 CKHCTHAACLDVCPTGALFRTEFGTVVVQQDVCNGCGYCVSACPYGVI 247


>gi|157370673|ref|YP_001478662.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Serratia proteamaculans 568]
 gi|157322437|gb|ABV41534.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 204

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+     ++ + ++   CI C +C   CP  AI       L +   
Sbjct: 51  CHQCEDAPCAQVCPVNAIRHQDDAIVLNESLCISCKLCGIACPFGAIGFGGSTPLAIPAD 110

Query: 69  INSEYATQWPNITTKKES 86
            N+  A   P        
Sbjct: 111 CNTSLALPAPKAPRPISP 128


>gi|94265631|ref|ZP_01289373.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93453841|gb|EAT04204.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 291

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCPV+         + +  D+CI C  C   CP    + D + 
Sbjct: 100 CQHCRKPACARVCPVNAISRLPEGPVVVVEDKCIGCRYCYQACPFSVPELDFDE 153


>gi|54295706|ref|YP_128121.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
 gi|53755538|emb|CAH17037.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
          Length = 204

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  I   EC  CG+C   CPVD I+
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIE 130



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 79 IKEDECIGCTKCIKACPVDAI 99



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  ++T  C  C    CV+ CPVDC   
Sbjct: 106 MHAIITHECTGCGL--CVDPCPVDCIEM 131


>gi|158520140|ref|YP_001528010.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158508966|gb|ABW65933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 325

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  V  E C  C    CV  CPV      E+ + I    C+ CG+C  +CP +A++
Sbjct: 205 MPVVKKEACKKCMD--CVNRCPVKAISHQEDTITIDMGLCLGCGICTEKCPHEAME 258


>gi|57641578|ref|YP_184056.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
 gi|57159902|dbj|BAD85832.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
          Length = 637

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +  V+ + C  CK    +  CP   +      + I    C  CGVC   CP DAIK  +E
Sbjct: 573 LPVVIEDKCTGCKACILLTGCPALVYDPETKKVRIDELLCTGCGVCNQTCPFDAIKFPSE 632


>gi|186681639|ref|YP_001864835.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nostoc punctiforme PCC 73102]
 gi|186464091|gb|ACC79892.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc
          punctiforme PCC 73102]
          Length = 74

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DCV+ CPV C ++G        ++  I    CIDCG+C   CPV
Sbjct: 1  MPHTIVTEVCEGV--ADCVDACPVACIHDGPGKNAKGTDWYWIDFATCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +  P L+ 
Sbjct: 59 EGAILAEERPELQK 72


>gi|257065418|ref|YP_003145090.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256793071|gb|ACV23741.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 414

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 4  VVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V TE C+  ++       CVE C        +  L +HP +CI CG C   CP  AI+
Sbjct: 21 VHTERCVTVRNRHAACLRCVEACTSGAIIYEDGELQVHPKKCIGCGTCATACPTSAIE 78



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           T+ C  C    C   CP    +   E + +   H    C+ C +CE  CP  AI   ++ 
Sbjct: 312 TDACTSC--RMCTVFCPTGALFRVDEDDTWGVAHRASACVQCRLCENLCPQHAIHVKSDV 369

Query: 62  GLELWL 67
               ++
Sbjct: 370 PARQFM 375



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 11/29 (37%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            I  D C  C +C   CP  A+    E  
Sbjct: 309 VIDTDACTSCRMCTVFCPTGALFRVDEDD 337


>gi|226329122|ref|ZP_03804640.1| hypothetical protein PROPEN_03025 [Proteus penneri ATCC 35198]
 gi|225202308|gb|EEG84662.1| hypothetical protein PROPEN_03025 [Proteus penneri ATCC 35198]
          Length = 209

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T+ C  CK  +C++VCPV      E F  + +    CI C  C   CP
Sbjct: 121 TDTCRQCKDPECMKVCPVKAIRYQEEFGCIVVDTRRCIGCAACTTACP 168


>gi|90578855|ref|ZP_01234665.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
 gi|90439688|gb|EAS64869.1| anaerobic dimethyl sulfoxide reductase, subunit B [Vibrio angustum
           S14]
          Length = 215

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C H +C +VCP    +  E +  + ++ D CI C  C   CP    +   
Sbjct: 68  AYYLSISCNHCTHPECTKVCPSGAMHKREEDGLVVVNEDVCIGCKYCHMACPYGEPQYSE 127

Query: 60  EPGL 63
           E G 
Sbjct: 128 EKGH 131


>gi|302392555|ref|YP_003828375.1| electron transfer flavoprotein alpha/beta-subunit [Acetohalobium
          arabaticum DSM 5501]
 gi|302204632|gb|ADL13310.1| Electron transfer flavoprotein alpha/beta-subunit [Acetohalobium
          arabaticum DSM 5501]
          Length = 399

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          NC LC+  +C+E CP D     ++ + I+   C  CG+C   CP   I+P  + 
Sbjct: 10 NCTLCE--ECIEACPFDAIEIVDDKVEINA-ACKACGICVDTCPEGVIQPVEDE 60


>gi|294677802|ref|YP_003578417.1| dimethyl sulfoxide reductase subunit B [Rhodobacter capsulatus SB
           1003]
 gi|294476622|gb|ADE86010.1| dimethyl sulfoxide reductase, B subunit [Rhodobacter capsulatus SB
           1003]
          Length = 238

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C++  CV VCP     +  + L  I    C+ CG+C   CP  A + D
Sbjct: 78  CVHCENPPCVPVCPTGASQQTADGLVQIDASRCLGCGLCAWACPYGARELD 128


>gi|294102514|ref|YP_003554372.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293617494|gb|ADE57648.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 622

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI CK   C+    CP   F E      I    C+ CGVC   CP  AI
Sbjct: 565 VDPEKCIGCKF--CINFFNCPGLVFDEAGKKAYIDERFCVSCGVCSKVCPHGAI 616


>gi|197283947|ref|YP_002149819.1| hydrogenase 2 protein HybA [Proteus mirabilis HI4320]
 gi|227358181|ref|ZP_03842522.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
 gi|194681434|emb|CAR40272.1| hydrogenase-2 4fe-4s subunit [Proteus mirabilis HI4320]
 gi|227161517|gb|EEI46554.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
          Length = 337

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            + + C+ C   +CV VCPV    +      +  H D C  C  C   CP +  K D + 
Sbjct: 113 FIKKQCMHCVDANCVSVCPVSALTKDPKTGIVHYHADICTGCRYCMVGCPYNIPKYDYDD 172

Query: 62  GL 63
             
Sbjct: 173 PF 174


>gi|162419562|ref|YP_001605308.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
          Angola]
 gi|167400476|ref|ZP_02305985.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
          [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|162352377|gb|ABX86325.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
          [Yersinia pestis Angola]
 gi|167049844|gb|EDR61252.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
          [Yersinia pestis biovar Antiqua str. UG05-0454]
          Length = 652

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 37 CHHCEDAPCASTCPNGAIVELNNRVQVIQEKCIGCKTCMIACPFG 81


>gi|197118561|ref|YP_002138988.1| iron-sulfur cluster-binding hydrogenase protein [Geobacter
           bemidjiensis Bem]
 gi|197087921|gb|ACH39192.1| iron-sulfur cluster-binding hydrogenase protein [Geobacter
           bemidjiensis Bem]
          Length = 264

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C+   C+E CP       E   + + PD C  CG C   CP   I
Sbjct: 79  SDVCKHCERAGCLEACPTGAIVRTEFESVYVQPDVCNGCGYCVVCCPFGVI 129


>gi|238790208|ref|ZP_04633984.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
 gi|238721746|gb|EEQ13410.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
          Length = 207

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|332981823|ref|YP_004463264.1| Fe-S cluster domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332699501|gb|AEE96442.1| Fe-S cluster domain protein [Mahella australiensis 50-1 BON]
          Length = 434

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C  C  T+C++ CP +          I  + CIDCG C   CP  A    T+P
Sbjct: 14 EKCRGC--TNCIKRCPTEAIRVRAGKANITAERCIDCGECIRVCPYHAKLAVTDP 66


>gi|329910059|ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546284|gb|EGF31313.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 242

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD---TEPGLE 64
           CI C  T C++ CPVD        +  I  D C  C +C   CPVD I      T  G +
Sbjct: 102 CIGC--TLCIQACPVDAILGAPKQMHTILADLCTGCDLCVAPCPVDCIAMVAVTTTTGWQ 159

Query: 65  LWLKINSEYAT 75
            W +  ++ A 
Sbjct: 160 AWTEQQADEAR 170



 Score = 37.1 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PV           I    CI C +C   CPVDAI
Sbjct: 84  PVHGIERPRPVAIIDEALCIGCTLCIQACPVDAI 117


>gi|37526279|ref|NP_929623.1| electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785710|emb|CAE14694.1| Electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 210

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  ENCI C  T C++ CPVD        +  I  D C  C +C   CP D I
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTIVEDLCTGCDLCVAPCPTDCI 162


>gi|320353396|ref|YP_004194735.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320121898|gb|ADW17444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 253

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 8   NCILCKHTDCVEVCPV----DCFYEGENFLA-----IHPDECIDCGVCEPECPVDA---- 54
            C+ C +  CV  CPV       ++    L+     I+ ++CI CG C P CP DA    
Sbjct: 80  PCMQCDNPPCVAACPVKGKDGATWKSTEGLSAGLVMINYEQCIGCGACVPACPYDARTMD 139

Query: 55  ---IKPDTEPGLELWLKINS-EYATQWPNITTKKESLPSAAK 92
              +  D  P ++ +  + S EY  +WP  + K   + +A K
Sbjct: 140 QGGMHGDGTPAIQKYETMASYEYGKKWPR-SGKNTPVGNARK 180


>gi|317488527|ref|ZP_07947075.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912361|gb|EFV33922.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 258

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            C+ C++ +CV VCP     + ++ + I   D CI CG C   CP  A
Sbjct: 53  ACMHCENPECVSVCPTGASQKLDDGVVIVDYDACITCGYCMSACPYGA 100


>gi|306835751|ref|ZP_07468755.1| 4Fe-4S ferredoxin [Corynebacterium accolens ATCC 49726]
 gi|304568382|gb|EFM43943.1| 4Fe-4S ferredoxin [Corynebacterium accolens ATCC 49726]
          Length = 352

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   + G
Sbjct: 122 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGG 179


>gi|295106207|emb|CBL03750.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 178

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +V   C  C+   C  VCP    Y  ++ +  + P++CI C  C   CP  A
Sbjct: 53  IVPTQCQHCEDAPCAAVCPTHATYVTDSGVVLVDPEKCIGCKYCMAACPYQA 104


>gi|170290729|ref|YP_001737545.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174809|gb|ACB07862.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 656

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 20/77 (25%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE----------------G--ENFLAIHPDECIDCGVC 46
           V E C LC    C EVCPV    E                G       I P+ C  CG C
Sbjct: 250 VNERCNLCG--KCEEVCPVSVPDEYEYGIKKRKAIYLPYSGAYPERYVIDPNSCTFCGKC 307

Query: 47  EPECPVDAIKPDTEPGL 63
              CPV+AI  + + G 
Sbjct: 308 VEVCPVNAIDLNEKEGE 324



 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV +CP +        +G  +  I P  C  CG C   CP  AI+ 
Sbjct: 587 CSGCG--ICVSICPFNAISMQKREDGTRYSKIDPLLCEGCGTCVAACPSAAIQQ 638



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            +   +C  CG+C   CP +AI          + KI+
Sbjct: 581 EVDESKCSGCGICVSICPFNAISMQKREDGTRYSKID 617


>gi|56414804|ref|YP_151879.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363732|ref|YP_002143369.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|56129061|gb|AAV78567.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095209|emb|CAR60760.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
          Length = 202

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  + C  C    C   CP +    E      I  ++C+ CG+C  +CP  AI+
Sbjct: 571 YVINPDICKGCGL--CARSCPQNAITGERGKPYTIDQEKCVKCGLCASKCPFKAIE 624



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CP            I+PD C  CG+C   CP +AI  +
Sbjct: 559 ECPSG-MCTAFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|291435505|ref|ZP_06574895.1| 4Fe-4S ferredoxin [Streptomyces ghanaensis ATCC 14672]
 gi|291338400|gb|EFE65356.1| 4Fe-4S ferredoxin [Streptomyces ghanaensis ATCC 14672]
          Length = 266

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  +PD    
Sbjct: 176 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDQRPDDGRA 235

Query: 63  LE 64
            +
Sbjct: 236 WK 237


>gi|261342166|ref|ZP_05970024.1| hydrogenase-4 component A [Enterobacter cancerogenus ATCC 35316]
 gi|288315499|gb|EFC54437.1| hydrogenase-4 component A [Enterobacter cancerogenus ATCC 35316]
          Length = 202

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     E  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAGVCPVNAITRVEGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
 gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
          Length = 595

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + C  C  T C   CP D      +    IH D+C+ CG C  +C   AI  +
Sbjct: 544 ADKCKGC--TLCARTCPNDAISGAVKEPHVIHQDKCVKCGACMEKCRFGAIYKE 595



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I  D+C  C +C   CP DAI
Sbjct: 529 CPAG-VCKALLSYKIDADKCKGCTLCARTCPNDAI 562


>gi|156975236|ref|YP_001446143.1| electron transport complex protein RnfB [Vibrio harveyi ATCC
           BAA-1116]
 gi|166225088|sp|A7MVC6|RNFB_VIBHB RecName: Full=Electron transport complex protein rnfB
 gi|156526830|gb|ABU71916.1| hypothetical protein VIBHAR_02965 [Vibrio harveyi ATCC BAA-1116]
          Length = 197

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 60  EPGLELWL-KINS 71
           E   E W  K+N+
Sbjct: 165 ETTTESWKWKLNA 177


>gi|152971583|ref|YP_001336692.1| hydrogenase-3, Fe-S subunit (part of FHL complex) [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956432|gb|ABR78462.1| hydrogenase-3, Fe-S subunit (part of FHL complex) [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
          Length = 169

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 16 QMCHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|325833389|ref|ZP_08165838.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|325485313|gb|EGC87782.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 207

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C +  C  VCP    ++ E  L      +CI CG C   CP  A   D  
Sbjct: 59  AYHVSISCNHCNNPVCTRVCPTGAMHKDELGLVWPDATKCIGCGYCTMACPYHAPHIDAR 118


>gi|225574327|ref|ZP_03782937.1| hypothetical protein RUMHYD_02392 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038478|gb|EEG48724.1| hypothetical protein RUMHYD_02392 [Blautia hydrogenotrophica DSM
           10507]
          Length = 433

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C +VCP+       +       +  + C+ CGVC   C V AI+ +  P 
Sbjct: 301 DKCVGCG--KCAKVCPILAIEMAGDSKKKKAEVDTEICLGCGVCARNCLVKAIEMERRPV 358

Query: 63  L 63
            
Sbjct: 359 Q 359



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           P+           I  D+C+ CG C   CP+ AI+
Sbjct: 285 PMQPVATTNYIPKISLDKCVGCGKCAKVCPILAIE 319


>gi|224370438|ref|YP_002604602.1| putative anaerobic dimethyl sulfoxide reductase, chain B (DMSO
           reductase, iron-sulfur subunit) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693155|gb|ACN16438.1| putative anaerobic dimethyl sulfoxide reductase, chain B (DMSO
           reductase, iron-sulfur subunit) [Desulfobacterium
           autotrophicum HRM2]
          Length = 175

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    C EVCPV+   +   +  + +    CI CG C   CP    +   +  ++ 
Sbjct: 66  SCLHCSDPACAEVCPVEAISKQTADGRVRVDTTLCIGCGACAEACPFGVPQFGEDQVMQK 125


>gi|217967301|ref|YP_002352807.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336400|gb|ACK42193.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 443

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C  C H  C+  CP +          I P  CIDCG C   CP  A  
Sbjct: 14 QRCRGCIH--CIRHCPTEAMRVRNGKSLIIPYRCIDCGECIRVCPYHAPF 61


>gi|89053933|ref|YP_509384.1| 4Fe-4S ferredoxin, iron-sulfur binding [Jannaschia sp. CCS1]
 gi|88863482|gb|ABD54359.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Jannaschia sp. CCS1]
          Length = 254

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D + G
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGARELDQDEG 143


>gi|325295599|ref|YP_004282113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066047|gb|ADY74054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 58

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +  E CI C    C  VCP +  +  ++    I P++CIDCG C   CP DAI  +
Sbjct: 1  MAHKIDPELCIGCG--ACASVCPTNAIHPTDDGKYEIVPEDCIDCGACVEVCPTDAISAE 58



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          I P+ CI CG C   CP +AI P  +   E
Sbjct: 5  IDPELCIGCGACASVCPTNAIHPTDDGKYE 34


>gi|320667607|gb|EFX34522.1| putative polyferredoxin [Escherichia coli O157:H7 str. LSU-61]
          Length = 284

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIR 64


>gi|297618262|ref|YP_003703421.1| electron transfer flavoprotein alpha/beta-subunit
          [Syntrophothermus lipocalidus DSM 12680]
 gi|297146099|gb|ADI02856.1| Electron transfer flavoprotein alpha/beta-subunit
          [Syntrophothermus lipocalidus DSM 12680]
          Length = 394

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 13/71 (18%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI---KPDTE----- 60
          CI C    CVE CP        N   +  D C  CG C  +CPV AI   +P+T+     
Sbjct: 9  CIGCG--ICVETCPFGSITLVNNVPVV-SDTCTLCGSCAHDCPVGAIVITRPETKAKVAS 65

Query: 61 --PGLELWLKI 69
              + +WL+I
Sbjct: 66 EAEDVWVWLEI 76



 Score = 40.1 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I    CI CG+C   CP  +I
Sbjct: 1  MITIDETLCIGCGICVETCPFGSI 24


>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 573

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           YVV  + C  C    C   CPV C   G+      I  ++CI CG C   CP   I
Sbjct: 518 YVVDPDKCRKCGL--CARNCPVKCIS-GDRQTPYFIDQEKCIKCGTCMQVCPFGVI 570



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            + PD+C  CG+C   CPV  I  D
Sbjct: 507 CPAK-VCPALIKYVVDPDKCRKCGLCARNCPVKCISGD 543


>gi|262198332|ref|YP_003269541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081679|gb|ACY17648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 739

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    CV  C  D        GE  + I+   C+ C +C   CP  AI+
Sbjct: 262 CRTCSDQRCVSGCEYDSIKFDASRGE--VVINEATCVGCTMCAQSCPFHAIE 311


>gi|152990158|ref|YP_001355880.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
 gi|151422019|dbj|BAF69523.1| 4Fe-4S ferredoxin [Nitratiruptor sp. SB155-2]
          Length = 84

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C E CP +   EG+    I PD C +C        C   CPVD 
Sbjct: 1  MSLMITDECIACD--ACREECPTEAIEEGDPIYIIDPDRCTECVGFYDEPACIAVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|116695680|ref|YP_841256.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia
          eutropha H16]
 gi|113530179|emb|CAJ96526.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia
          eutropha H16]
          Length = 383

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CPV       N   +  + C  C  C P CP  AI
Sbjct: 19 CIRCN--SCEESCPVGAITHDHNNYVVDVERCNHCRACLPPCPTGAI 63



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P  CI C  CE  CPV AI  D
Sbjct: 14 IDPAICIRCNSCEESCPVGAITHD 37


>gi|134300070|ref|YP_001113566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052770|gb|ABO50741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 272

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           NCI CK   CV +CP+    + E+   ++   CI CG C   CP +A   D +  L    
Sbjct: 201 NCIDCKL--CVNLCPMGSI-DYEDVSKLN-GICIKCGACIKNCPTEAKYYDDKDYLRHKH 256

Query: 68  KINSEYATQ 76
           ++  ++A++
Sbjct: 257 ELEVDFASR 265


>gi|150018614|ref|YP_001310868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905079|gb|ABR35912.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 189

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C   CP       +  + I+ D CI C  C   CP  AI
Sbjct: 59  CRHCENAPCANACPNGSIINKDGVVLINKDTCIGCKSCAIVCPFGAI 105


>gi|320646306|gb|EFX15233.1| putative polyferredoxin [Escherichia coli O157:H- str. 493-89]
 gi|320651811|gb|EFX20191.1| putative polyferredoxin [Escherichia coli O157:H- str. H 2687]
          Length = 284

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIR 64


>gi|293604806|ref|ZP_06687203.1| tetrathionate reductase subunit B [Achromobacter piechaudii ATCC
           43553]
 gi|292816634|gb|EFF75718.1| tetrathionate reductase subunit B [Achromobacter piechaudii ATCC
           43553]
          Length = 256

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ C  C   CP DA  I  DT+   +
Sbjct: 112 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCAYCVQACPYDARFINHDTQTADK 170


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  + C  C    C   CP +    E      I  ++C+ CG+C  +CP  AI+
Sbjct: 571 YVINPDICKGCGL--CARSCPQNAITGERGKPYTIDQEKCVKCGLCASKCPFKAIE 624



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CP            I+PD C  CG+C   CP +AI  +
Sbjct: 559 ECPSG-MCTAFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|257055934|ref|YP_003133766.1| formate dehydrogenase beta subunit [Saccharomonospora viridis DSM
           43017]
 gi|256585806|gb|ACU96939.1| formate dehydrogenase beta subunit [Saccharomonospora viridis DSM
           43017]
          Length = 337

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 158 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSACPYGVI 208


>gi|237729667|ref|ZP_04560148.1| electron transporter HydN [Citrobacter sp. 30_2]
 gi|226908273|gb|EEH94191.1| electron transporter HydN [Citrobacter sp. 30_2]
          Length = 181

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|224368298|ref|YP_002602461.1| HdrA2 [Desulfobacterium autotrophicum HRM2]
 gi|223691014|gb|ACN14297.1| HdrA2 [Desulfobacterium autotrophicum HRM2]
          Length = 1017

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 7    ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            E C  C    C+ VCP +        +   ++   C  CG C   CP +A         +
Sbjct: 949  ERCAGCGG--CIAVCPYNAITMDKVNHVAVVNDALCKGCGACAATCPSEAPSLMGFNNEQ 1006

Query: 65   LWLKINSEYA 74
            L+ +I S  A
Sbjct: 1007 LYAQIKSAMA 1016



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 25/80 (31%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEG---------------ENFLAIHPDECI--- 41
           YV T+ CI C    C E CP    D + EG                    I P+ C+   
Sbjct: 109 YVDTDKCIACGL--CAEKCPKKVDDEYNEGLGKRKAIYVSYSQAVPLKYTIDPENCLYLT 166

Query: 42  --DCGVCEPECPVDAIKPDT 59
              CG CE  CP  AI    
Sbjct: 167 KGKCGNCEKVCPSHAINYLD 186



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 24  DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           D    G     I+P+ C  CG C   CP +AI  D
Sbjct: 935 DSINIGGIVAQINPERCAGCGGCIAVCPYNAITMD 969


>gi|167552275|ref|ZP_02346028.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323057|gb|EDZ10896.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 223

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  N +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAANGIVDVNPDLCVGCQYCIAACPY 137


>gi|152978944|ref|YP_001344573.1| hydrogenase 2 protein HybA [Actinobacillus succinogenes 130Z]
 gi|150840667|gb|ABR74638.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Actinobacillus succinogenes 130Z]
          Length = 330

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP    + D
Sbjct: 109 IKKQCMHCVEPNCVSVCPVQALTKNPITGIVQYDPDICTGCRYCMVACPFTVPQYD 164


>gi|317493909|ref|ZP_07952326.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918236|gb|EFV39578.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 181

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C  VCP       ++F+ +  ++CI C  C   CP  
Sbjct: 58  CRQCEDAPCANVCPNGAISRQKDFIYVSQEKCIGCKTCVVACPYG 102


>gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4]
 gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          3_1_33FAA]
 gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei
          5_1_36/D4]
 gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          3_1_33FAA]
          Length = 302

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C++VCP          +     +C+ CG C  ECP  AI+
Sbjct: 53 CLGCG--TCLKVCPNGALTLTPEGIVTDKQKCVLCGRCAEECPAMAIE 98



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C           G++ L     +C+ CG C   CP  A
Sbjct: 27 CPLSCVWCHNPEGIRNGKDKLY-TAKKCLGCGTCLKVCPNGA 67


>gi|126736831|ref|ZP_01752566.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126721416|gb|EBA18119.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 254

 Score = 55.5 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEG 137


>gi|325121371|gb|ADY80894.1| putative iron-sulfur protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 263

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           PV      +   AI   DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRMKAIIREDECIGCTKCISACPVDAI 107


>gi|256810303|ref|YP_003127672.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793503|gb|ACV24172.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 247

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C+E CP++   +  + + I+ D+CI CG C   CP +AI
Sbjct: 193 VNKDLCVGC--FVCIEECPINAIEQEGDKVKINKDKCILCGRCADVCPANAI 242



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-------HPDECIDCGVCEPECPVDAI 55
           V  ++C+ C    C EVCP  C   E +    I       + D C+ C VC  ECP++AI
Sbjct: 156 VNLDSCMGCG--ACAEVCPKKCIRVESDIGEVIKTRDIEVNKDLCVGCFVCIEECPINAI 213

Query: 56  KPD 58
           + +
Sbjct: 214 EQE 216



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          YV    C+ C    C + CPVD     + +    I  D+C+ C +C   CPV AI 
Sbjct: 39 YVNETKCVRCNL--CYKECPVDAIEKAKIKKPAKIIHDKCVKCEICAQTCPVGAIY 92



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 28/76 (36%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--------------------------C 40
           + C+ C+   C + CPV   Y  E    I+ DE                          C
Sbjct: 74  DKCVKCE--ICAQTCPVGAIYVIEGKAEINNDEVNYEIKNKVIPHRKIRLKNYELDESKC 131

Query: 41  IDCGVCEPECPVDAIK 56
           I CG+C   CP DAIK
Sbjct: 132 IKCGICARYCPTDAIK 147


>gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2]
 gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++CI C   +CV  CP       EN +A    +CI+CG C   CP +A++
Sbjct: 54  GQSCIGCG--ECVAACPEQALELNENGVARDLVKCINCGHCAEICPANAME 102



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 21  CPVDCFY----EG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK-INS- 71
           CP+ C +    EG   E+ +  +   CI CG C   CP  A++ +        +K IN  
Sbjct: 31  CPLSCPWCHNPEGLSLESRVTYNGQSCIGCGECVAACPEQALELNENGVARDLVKCINCG 90

Query: 72  EYATQWPN----ITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
             A   P      T +  S  S  +M     K ++ F  + GG  T
Sbjct: 91  HCAEICPANAMEKTGRCHSTDSLMEMI----KKDRLFYESSGGGVT 132


>gi|212691452|ref|ZP_03299580.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|237726262|ref|ZP_04556743.1| ferredoxin [Bacteroides sp. D4]
 gi|212666062|gb|EEB26634.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|229434788|gb|EEO44865.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
          Length = 315

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KI 69
           ++
Sbjct: 281 EV 282



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVEVC  D  +         +  ++C  CG C   CP   I+
Sbjct: 145 CLGCGD--CVEVCQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKIIE 192


>gi|90408373|ref|ZP_01216536.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
 gi|90310536|gb|EAS38658.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
          Length = 190

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CP D I
Sbjct: 105 LAFIREDECIGC--TKCIQACPVDAILGATRQMHTVITDECTGCELCVAPCPTDCI 158


>gi|73748057|ref|YP_307296.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. CBDB1]
 gi|73659773|emb|CAI82380.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. CBDB1]
          Length = 312

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  C +VCPV   F + +  + I    CI C  C   CP  A
Sbjct: 146 PCMHCDNPPCTQVCPVGATFKQADGTVVIDYQRCIGCRFCIVACPYTA 193


>gi|330997031|ref|ZP_08320893.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
 gi|329571529|gb|EGG53211.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
          Length = 318

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+ CP +      N   I P++C  C  CE  CP  AI     P  +  +
Sbjct: 223 SCIGCG--KCVKTCPFEAITLNNNLAYIDPEKCKLCRKCEEACPKGAIHAINFPPRKPKV 280

Query: 68  KINSEYATQWPNITTKKESLPSAAK 92
           +  +  A   P     +     AA+
Sbjct: 281 EKPTATAAPKPTNPAAQPVSAPAAQ 305



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
              DCV  C               +  + C  CG C   CP   I+
Sbjct: 147 GGGDCVAACQFGALSINPETGLPEVDEERCTACGACVKTCPRRVIE 192


>gi|325969844|ref|YP_004246036.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
 gi|323709047|gb|ADY02534.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
          Length = 448

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 26/71 (36%), Gaps = 20/71 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPV------DCFYEG------------ENFLAIHPDECIDCG 44
           +V  E C  C    C EVCPV      D    G                 I  D CI CG
Sbjct: 108 FVNEELCTGCG--TCEEVCPVVLPKEYDYGLRGRKAAYIPFDTAVPKKAVIDIDNCIFCG 165

Query: 45  VCEPECPVDAI 55
            CE ECP  AI
Sbjct: 166 QCERECPAGAI 176


>gi|322515042|ref|ZP_08068050.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC
           25976]
 gi|322118922|gb|EFX91099.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC
           25976]
          Length = 206

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            +V  + CI C  T C++ CPVD        +  I  D C  C +C   CP + I+    
Sbjct: 109 AFVHEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTNCIEMIKV 166

Query: 60  EPGLELW 66
           +P    W
Sbjct: 167 KPSARSW 173


>gi|283786726|ref|YP_003366591.1| formate hydrogenlyase subunit 2 [Citrobacter rodentium ICC168]
 gi|282950180|emb|CBG89816.1| formate hydrogenlyase subunit 2 [Citrobacter rodentium ICC168]
          Length = 203

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|257790276|ref|YP_003180882.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830250|ref|ZP_08163707.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474173|gb|ACV54493.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487717|gb|EGC90155.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 222

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +T  C  C   +CV+VCP    ++ E+    I   +CI C  C   CP      + E 
Sbjct: 58  YFLTVQCQHCADPECVKVCPTGASHKLEDGTVQIDKSKCIGCQFCAMSCPYGVRYLNEEE 117


>gi|116074820|ref|ZP_01472081.1| ferredoxin [Synechococcus sp. RS9916]
 gi|116068042|gb|EAU73795.1| ferredoxin [Synechococcus sp. RS9916]
          Length = 74

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 1  MTYV-VTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M +  VT+ C      DC++ CPV C   G+        F  I  D CIDCG+C   CPV
Sbjct: 1  MAHTFVTDVCEGI--ADCLDACPVACIQPGKGRNKKGTEFFWIDFDTCIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + AI  +  P L+
Sbjct: 59 EGAILAEERPDLQ 71


>gi|320640863|gb|EFX10351.1| putative polyferredoxin [Escherichia coli O157:H7 str. G5101]
          Length = 284

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIR 64


>gi|269962089|ref|ZP_06176443.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
 gi|269833173|gb|EEZ87278.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
          Length = 197

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 60  EPGLELWL-KINS 71
           E   E W  K+N+
Sbjct: 165 ETTTESWKWKLNA 177


>gi|289432084|ref|YP_003461957.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
 gi|288945804|gb|ADC73501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
          Length = 312

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  C +VCPV   F + +  + I    CI C  C   CP  A
Sbjct: 146 PCMHCDNPPCTQVCPVGATFKQADGTVVIDYQRCIGCRFCIVACPYTA 193


>gi|298530775|ref|ZP_07018177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510149|gb|EFI34053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 307

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C   +C + CP            +  D C+ CGVC   CPV  +K   +      
Sbjct: 239 ELCIKCG--ECAQACPFQAIAMSREGPVVSQDLCMGCGVCVSRCPVQGLKLKRQKDKSPP 296

Query: 67  LKIN 70
           L++N
Sbjct: 297 LEVN 300



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPG 62
             + CI CG C   CP  AI    E  
Sbjct: 237 DQELCIKCGECAQACPFQAIAMSREGP 263


>gi|253700578|ref|YP_003021767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251775428|gb|ACT18009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 278

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F + +   +      CI C  C   CP    K +
Sbjct: 81  EMCMHCNEPACASVCPVGAFTKTKEGPVVYDAKRCIGCRFCMVACPFGVPKYE 133


>gi|15219311|ref|NP_173114.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial,
           putative [Arabidopsis thaliana]
 gi|297844602|ref|XP_002890182.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata]
 gi|9989050|gb|AAG10813.1|AC011808_1 Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|21553581|gb|AAM62674.1| NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana]
 gi|297336024|gb|EFH66441.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata]
 gi|332191363|gb|AEE29484.1| Alpha-helical ferredoxin [Arabidopsis thaliana]
          Length = 222

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAVCPAQAITIEAEERED 147



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|238784803|ref|ZP_04628805.1| hypothetical protein yberc0001_7880 [Yersinia bercovieri ATCC
           43970]
 gi|238714316|gb|EEQ06326.1| hypothetical protein yberc0001_7880 [Yersinia bercovieri ATCC
           43970]
          Length = 680

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 62  CHHCEDAPCASTCPNGAIVEINNSVQVIQEKCIGCKTCIIACPFG 106


>gi|333028872|ref|ZP_08456936.1| putative Fe-S-cluster-containing hydrogenase, HybA [Streptomyces
           sp. Tu6071]
 gi|332748724|gb|EGJ79165.1| putative Fe-S-cluster-containing hydrogenase, HybA [Streptomyces
           sp. Tu6071]
          Length = 267

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+ 
Sbjct: 78  SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIEQ 130


>gi|242277839|ref|YP_002989968.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120733|gb|ACS78429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 200

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C  VCP       ++ + +  D C+ C  C   CP  A++
Sbjct: 62  CRHCEDAPCAAVCPNGAIQRTDSGVQVDEDHCVGCKTCLAACPFGAME 109


>gi|194476648|ref|YP_002048827.1| ferredoxin [Paulinella chromatophora]
 gi|171191655|gb|ACB42617.1| ferredoxin [Paulinella chromatophora]
          Length = 74

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 11/74 (14%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VT+ C      DCV  CPV C + G        NF  I  + CIDCG+C   CP+
Sbjct: 1  MAHTIVTDICEGI--ADCVNACPVACIHMGNGINKKGTNFYWIDFNTCIDCGICLQVCPL 58

Query: 53 D-AIKPDTEPGLEL 65
          + AI  +    L+ 
Sbjct: 59 ENAILAEERSELQQ 72


>gi|11498785|ref|NP_070014.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649398|gb|AAB90058.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 131

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDA 54
           E C+ C    CV +CP +  Y  G+  +AI+ ++C+ CG C   CP  A
Sbjct: 80  EKCVHCG--ACVSICPTEAIYINGDKRVAINTEKCVHCGSCVKVCPTRA 126



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
             ++C+ CG C   CP +AI  + +      + IN+E
Sbjct: 78  DDEKCVHCGACVSICPTEAIYINGD----KRVAINTE 110


>gi|147668913|ref|YP_001213731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dehalococcoides sp. BAV1]
 gi|146269861|gb|ABQ16853.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Dehalococcoides sp. BAV1]
          Length = 312

 Score = 55.5 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  C +VCPV   F + +  + I    CI C  C   CP  A
Sbjct: 146 PCMHCDNPPCTQVCPVGATFKQADGIVVIDYQRCIGCRFCIVACPYTA 193


>gi|327401002|ref|YP_004341841.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316510|gb|AEA47126.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 793

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            YV+ E C  C    C EVC  +          + P+ C  CG C   CP +A
Sbjct: 566 AYVIPELCFGCNL--CKEVCDFNAIDMAWGKAYVKPN-CTGCGACAAACPTNA 615



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 20/72 (27%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECIDC 43
              VT+ C  C    C  +CPV+   E E  LA                  I  + C+ C
Sbjct: 233 ARFVTDACTGCGV--CATLCPVEVPNEFEMGLANRKAIYIPFPQAVPLQYTIDAEHCLGC 290

Query: 44  GVCEPECPVDAI 55
           G+C   C   AI
Sbjct: 291 GMCSDVCSASAI 302


>gi|302390736|ref|YP_003826557.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201364|gb|ADL08934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 383

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   CI C    CV+VCP       ++ + I    C+ CG C   CP  A+    +  
Sbjct: 195 IKARCIRCGQ--CVDVCPHKSLQLVDDSIVIDKTVCVKCGRCARVCPEKALVVPIDEE 250


>gi|294634810|ref|ZP_06713334.1| electron transport protein HydN [Edwardsiella tarda ATCC 23685]
 gi|291091778|gb|EFE24339.1| electron transport protein HydN [Edwardsiella tarda ATCC 23685]
          Length = 157

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C  VCP       ++F+ +  ++CI C  C   CP  
Sbjct: 35 CRQCEDAPCANVCPNGAISRQQDFICVDQEKCIGCKTCVVACPYG 79


>gi|269138998|ref|YP_003295699.1| tetrathionate reductase, subunit B [Edwardsiella tarda EIB202]
 gi|267984659|gb|ACY84488.1| tetrathionate reductase, subunit B [Edwardsiella tarda EIB202]
 gi|304558934|gb|ADM41598.1| Tetrathionate reductase subunit B [Edwardsiella tarda FL6-60]
          Length = 254

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCPV   Y+ ++ +  +    C+ C  C   CP DA
Sbjct: 108 CNHCENPPCVAVCPVQATYQRDDGIVMVDNRRCVGCAYCIQACPYDA 154


>gi|213021403|ref|ZP_03335850.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
          Length = 207

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
          + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 13 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 68


>gi|124023226|ref|YP_001017533.1| ferredoxin 4Fe-4S [Prochlorococcus marinus str. MIT 9303]
 gi|123963512|gb|ABM78268.1| ferredoxin, 4Fe-4S [Prochlorococcus marinus str. MIT 9303]
          Length = 74

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV 52
          M + +VTE C      DC + CPV C   G+       NF  I+ D CIDCG+C   CPV
Sbjct: 1  MPHSIVTEICEGV--ADCAQACPVGCIQPGQGKNDKGRNFYLINFDICIDCGICLQVCPV 58

Query: 53 D-AIKPDTEPGLE 64
          + A+ P+    L+
Sbjct: 59 EGAVLPEERRDLQ 71


>gi|288932883|ref|YP_003436943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288895131|gb|ADC66668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 196

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +Y     C  C    C+E CP       EN + +  D CI+CG+C   CP   I+ 
Sbjct: 55  SYAFPSKCRHCDPAPCLEACPTSAINREENIVFVEVDRCINCGMCAMVCPFGVIRF 110


>gi|271501151|ref|YP_003334176.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270344706|gb|ACZ77471.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 180

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C+   C  VCP        + + +  ++CI C  C   CP  A
Sbjct: 54  TIQCRHCEDAPCANVCPNGAIVHAGDHIRVQQEKCIGCKTCVVACPYGA 102


>gi|257792519|ref|YP_003183125.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476416|gb|ACV56736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
            Y V+ +C  C +  C  VCP    ++ E  L      +CI CG C   CP  A   D  
Sbjct: 59  AYHVSISCNHCNNPVCTRVCPTGAMHKDELGLVWPDATKCIGCGYCTMACPYHAPHIDAR 118


>gi|157148263|ref|YP_001455581.1| hypothetical protein CKO_04080 [Citrobacter koseri ATCC BAA-895]
 gi|157085468|gb|ABV15146.1| hypothetical protein CKO_04080 [Citrobacter koseri ATCC BAA-895]
          Length = 170

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 16 QLCHHCEDAPCAVVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|41033733|emb|CAF18533.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus tenax]
          Length = 650

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YVV  + C  C    C  +       +  +    I P  C  C +C   CP +AIKP   
Sbjct: 580 YVVDADKCKSCG--ICYNLLKCYAISKQPDGKAWIDPSLCNGCSMCAQVCPYNAIKPQEP 637

Query: 61  PGLELWLKI 69
             +  WL++
Sbjct: 638 GKVNRWLEL 646


>gi|330984846|gb|EGH82949.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIVDECTGCDL--CVAPCPVDCIEM 138


>gi|331006635|ref|ZP_08329919.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
 gi|330419550|gb|EGG93932.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
          Length = 216

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I     
Sbjct: 115 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVDECTGCDLCVEPCPVDCIDMLPV 172

Query: 60  EPGLELW 66
           E  L+ W
Sbjct: 173 EQTLQEW 179



 Score = 33.6 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    CVE CPVDC 
Sbjct: 144 MHTVIVDECTGCDL--CVEPCPVDCI 167


>gi|311105621|ref|YP_003978474.1| sulfur reductase FeS subunit [Achromobacter xylosoxidans A8]
 gi|310760310|gb|ADP15759.1| sulfur reductase FeS subunit [Achromobacter xylosoxidans A8]
          Length = 256

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ +  +  + C+ C  C   CP DA  I  +T+   +
Sbjct: 112 CNHCDNPPCVPVCPVQATFQREDGIVLVDNERCVGCAYCVQACPYDARFINHETQTADK 170


>gi|293608863|ref|ZP_06691166.1| electron transport complex [Acinetobacter sp. SH024]
 gi|292829436|gb|EFF87798.1| electron transport complex [Acinetobacter sp. SH024]
          Length = 263

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 87  IREDECIGCTKCISACPVDAI 107


>gi|297526112|ref|YP_003668136.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
 gi|297255028|gb|ADI31237.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
          Length = 329

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V E CI C   +C++VCP +      N   I+   C  C  C   CP  AI+
Sbjct: 72  IVEEKCINCG--ECMKVCPFNAVELINNKYVINKWICEGCYTCSFVCPTKAIR 122



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ +YEG  +  I  ++CI+CG C   CP +A++
Sbjct: 61 IEPYYEG-RYAEIVEEKCINCGECMKVCPFNAVE 93


>gi|160915265|ref|ZP_02077478.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991]
 gi|158433064|gb|EDP11353.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991]
          Length = 87

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV VCPV       ++        CIDCG C   CPV+AI
Sbjct: 35 VNADTCIGCG--ACVGVCPVGALSMNADSKSECDEGTCIDCGSCISACPVEAI 85



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          ++ D CI CG C   CPV A+  + +   E
Sbjct: 35 VNADTCIGCGACVGVCPVGALSMNADSKSE 64


>gi|197118647|ref|YP_002139074.1| formate dehydrogenase iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
 gi|197088007|gb|ACH39278.1| formate dehydrogenase, iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
          Length = 279

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F + +   +      CI C  C   CP    K +
Sbjct: 82  EMCMHCNEPACASVCPVGAFKKTKEGPVVYDAKRCIGCRFCMVACPFGVPKYE 134


>gi|224023700|ref|ZP_03642066.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
 gi|224016922|gb|EEF74934.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
          Length = 322

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI 
Sbjct: 220 SCIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCEMECPKGAIH 266



 Score = 40.5 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +  ++C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVSACQFDAIHINPETGLPEVDENKCTACGACSKACPRNIIE 189


>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  E C  C    C   CP +    E      I  ++C+ CGVC  +CP  AI+
Sbjct: 571 YVINPEICKGCGL--CARSCPQNAITGERGKPYRIDQEKCVKCGVCASKCPFKAIE 624



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CP            I+P+ C  CG+C   CP +AI  +
Sbjct: 559 ECPSG-MCTAFKKYVINPEICKGCGLCARSCPQNAITGE 596


>gi|194289439|ref|YP_002005346.1| benzoyl-CoA oxygenase component a [Cupriavidus taiwanensis LMG
          19424]
 gi|193223274|emb|CAQ69279.1| Benzoyl-CoA oxygenase component A [Cupriavidus taiwanensis LMG
          19424]
          Length = 414

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     +    +  D C  C  C   CP  AI
Sbjct: 15 EICIRCN--TCEDTCPIDAITHDDRNYVVRADVCNGCNACLSPCPTGAI 61



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDDR 37


>gi|194446804|ref|YP_002043530.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405467|gb|ACF65689.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 223

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  N +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAANGIVDVNPDLCVGCQYCIAACPY 137


>gi|164686675|ref|ZP_02210703.1| hypothetical protein CLOBAR_00270 [Clostridium bartlettii DSM
           16795]
 gi|164604065|gb|EDQ97530.1| hypothetical protein CLOBAR_00270 [Clostridium bartlettii DSM
           16795]
          Length = 183

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C+  CPV      +N + +   +CI C  C   CP  AI
Sbjct: 65  CRHCEDAPCLNTCPVKAISRIDNSVIVDEVKCIGCKTCLLACPFGAI 111


>gi|161502103|ref|YP_001569215.1| hypothetical protein SARI_00120 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863450|gb|ABX20073.1| hypothetical protein SARI_00120 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 169

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 16 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|51244330|ref|YP_064214.1| Fe-S-cluster-containing oxidoreductase [Desulfotalea psychrophila
           LSv54]
 gi|50875367|emb|CAG35207.1| related to Fe-S-cluster-containing oxidoreductase [Desulfotalea
           psychrophila LSv54]
          Length = 200

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            V   C  C+ + C   CPV    + E+ + +  + C+ C  C   CP  AI+
Sbjct: 55  TVPVQCRQCEDSPCANACPVGAIVQRESHIDVIAELCVGCKSCLLACPFGAIQ 107


>gi|330889574|gb|EGH22235.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 290

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIVDECTGCDL--CVAPCPVDCIEM 138


>gi|324516961|gb|ADY46687.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Ascaris
           suum]
          Length = 207

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 106 ERCIACKL--CEAICPAQAITIEAEERPDGSRRTTRYDIDMTKCIFCGLCQEACPVDAI 162



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 106 ERCIACKLCEAICPAQAITIEAEE 129



 Score = 36.3 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 147 CIFCGL--CQEACPVDAIVEGPNF 168


>gi|323183237|gb|EFZ68634.1| hydrogenase-4 component A [Escherichia coli 1357]
          Length = 153

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 36 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 88


>gi|237712108|ref|ZP_04542589.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|229453429|gb|EEO59150.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
          Length = 315

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP +      N   I P +C  C  CE ECP  AI+    P  +  +
Sbjct: 223 SCIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCESECPKGAIQAINFPPRKPKV 280

Query: 68  KI 69
           ++
Sbjct: 281 EV 282



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVE C  D  +         +  ++C  CG C   CP   I+
Sbjct: 145 CLGCGD--CVEACQFDAIHMNPETGLPEVDEEKCTACGACSKACPRKIIE 192


>gi|189461429|ref|ZP_03010214.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136]
 gi|189431958|gb|EDV00943.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136]
          Length = 490

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y V+  C  C    C   CP     F +      I  D CI CG+C   CP  AI  
Sbjct: 113 YEVSNLCRGCVARSCYMNCPKGAVHFDKKTGQAHIDHDTCISCGICHKSCPYHAIVY 169



 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + EN    I   +CI CG C
Sbjct: 145 AHIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDENNIEHIDESKCIYCGKC 204

Query: 47  EPECPVDAIKP 57
              CP  AI  
Sbjct: 205 LNACPFGAIFE 215


>gi|146312838|ref|YP_001177912.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Enterobacter sp. 638]
 gi|145319714|gb|ABP61861.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Enterobacter sp. 638]
          Length = 202

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     E  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAGVCPVNAITRVEGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|330973101|gb|EGH73167.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 291

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-DECTGCDLCIAPCPVDCIE 137



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    C+  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CIAPCPVDCIEM 138


>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 597

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C++ CP D   EGE      +  ++CI CG C   CP  A+  +
Sbjct: 549 CVGCGV--CIKACPTDAI-EGERKQAHHLDMEKCIKCGGCVDACPFHAVIKE 597



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CP     +   F  I    C+ CGVC   CP DAI+ + +    L ++
Sbjct: 531 CPAG-VCQALFFYRIDDHICVGCGVCIKACPTDAIEGERKQAHHLDME 577


>gi|254466651|ref|ZP_05080062.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium Y4I]
 gi|206687559|gb|EDZ48041.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium Y4I]
          Length = 258

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDHCIGCGLCAWSCPYGARELDLAEG 137


>gi|270307565|ref|YP_003329623.1| Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. VS]
 gi|270153457|gb|ACZ61295.1| Ni/Fe hydrogenase, iron-sulfur cluster-binding subunit
           [Dehalococcoides sp. VS]
          Length = 267

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    CV VCPV   ++  N   +   D+C  C  C+  CP    K + +     
Sbjct: 73  CLHCYEPACVSVCPVGALHKRPNGAVVWDQDKCFGCRYCQNACPFQIPKFEWDDNWAK 130


>gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          9_1_42FAA]
 gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          9_1_42FAA]
          Length = 300

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C++VCP          +     +C+ CG C  ECP  AI+
Sbjct: 51 CLGCG--TCLKVCPNGALTLTPEGIVTDKQKCVLCGRCAEECPAMAIE 96



 Score = 34.0 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C           G++ L     +C+ CG C   CP  A
Sbjct: 25 CPLSCVWCHNPEGIRNGKDKLY-TAKKCLGCGTCLKVCPNGA 65


>gi|221211188|ref|ZP_03584167.1| ferredoxin [Burkholderia multivorans CGD1]
 gi|221168549|gb|EEE01017.1| ferredoxin [Burkholderia multivorans CGD1]
          Length = 87

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPHDPQHDESH 69


>gi|148361193|ref|YP_001252400.1| electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|296108529|ref|YP_003620230.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282966|gb|ABQ57054.1| Electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|295650431|gb|ADG26278.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 204

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  I   EC  CG+C   CPVD I+
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIE 130



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 79 IKEDECIGCTKCIKACPVDAI 99



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  ++T  C  C    CV+ CPVDC   
Sbjct: 106 MHAIITHECTGCGL--CVDPCPVDCIEM 131


>gi|52843076|ref|YP_096875.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630187|gb|AAU28928.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 204

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C  T C++ CPVD        +  I   EC  CG+C   CPVD I+  + P  
Sbjct: 82  DECIGC--TKCIKACPVDAIIGSSKLMHAIITHECTGCGLCVDPCPVDCIEMVSLPAA 137



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 79 IKEDECIGCTKCIKACPVDAI 99



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  ++T  C  C    CV+ CPVDC   
Sbjct: 106 MHAIITHECTGCGL--CVDPCPVDCIEM 131


>gi|331010114|gb|EGH90170.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIVDECTGCDL--CVAPCPVDCIEM 138


>gi|329114686|ref|ZP_08243445.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001]
 gi|326696166|gb|EGE47848.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001]
          Length = 162

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 20/100 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C   CP +    E E             I   +CI CG+CE  CPVDAI 
Sbjct: 61  ERCIACKL--CEATCPAEAITIEAEERDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAIV 118

Query: 56  -----KPDTEPGLELWLKINSEYA--TQWPNITTKKESLP 88
                +  TE   EL    N   A   +W  +  ++  L 
Sbjct: 119 EGPNYEFATETREELMYDKNKLLANGDRWEALLARRLELD 158


>gi|257094088|ref|YP_003167729.1| putative glutamate synthase (NADPH) small subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046612|gb|ACV35800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 540

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 9   CILCKHT----DCVEVCPVDC-FYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C +     +C  VCP +     G  N    + D C  CG+C  ECP  AIK + E 
Sbjct: 481 CLSCGNCFECDNCYGVCPDNAVIKLGPGNRFQFNYDYCKGCGMCVAECPCGAIKMEAEE 539


>gi|253688807|ref|YP_003017997.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755385|gb|ACT13461.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 223

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C H  CV+VCP    + +  N +  ++PD C+ C  C   CP     I P T+   
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPYQVRFIHPKTKTAD 150

Query: 64  E 64
           +
Sbjct: 151 K 151


>gi|227329116|ref|ZP_03833140.1| nitrite reductase complex component [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 223

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C H  CV+VCP    + +  N +  ++PD C+ C  C   CP     I P T+   
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDATNGIVDVNPDLCVGCQYCIAACPYQVRFIHPKTKTAD 150

Query: 64  E 64
           +
Sbjct: 151 K 151


>gi|206559193|ref|YP_002229953.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
 gi|198035230|emb|CAR51104.1| 4Fe-4S ferredoxin [Burkholderia cenocepacia J2315]
          Length = 88

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|170749599|ref|YP_001755859.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656121|gb|ACB25176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C++VCP        + + I P  C  CG C   CP  A          L  ++
Sbjct: 284 TRCLDVCPTGAIAPAGDTVRIDPYVCAGCGSCAALCPTGAAAYALPTSDALMRRL 338



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C LC    CV  CP     +      L      C+ CG+C   CP D I    +     
Sbjct: 523 DCTLCL--ACVSACPTHALSDSAEQPLLGFEESLCVQCGLCAATCPEDVITLRPQVDFAA 580

Query: 66  WLK 68
           W  
Sbjct: 581 WAA 583


>gi|117618154|ref|YP_857269.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559561|gb|ABK36509.1| 4Fe-4S binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 222

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP         +  + I+PD C+ C  C   CP  
Sbjct: 92  SCQHCDNAPCVHVCPTGASHIRAEDGIVDINPDLCVGCRYCLAACPYQ 139


>gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 681

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI-KPDT 59
            ++    CI C  T C+  CPVD     +  +  +  DEC  C +C   CP+D I     
Sbjct: 103 AFIDESQCIGC--TRCLPACPVDAIVGAQRQVHTVLADECTGCRLCVDACPMDCITMQPV 160

Query: 60  EPGLELWL 67
           EP L   +
Sbjct: 161 EPPLNARI 168



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 18/38 (47%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+  PV     G     I   +CI C  C P CPVDAI
Sbjct: 88  VDPEPVADDSTGPAVAFIDESQCIGCTRCLPACPVDAI 125



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 16/59 (27%)

Query: 7   ENCILCKHTDCVEVCPVDC--------------FYEGENFLAIHPDECIDCGVCEPECP 51
           + CI C    C EVCP                   E    + + P  C  C  CE  CP
Sbjct: 552 QPCISCG--RCAEVCPEGLQPFEMARRIRAGVDVGEAAEHIDLDPMRCTGCSSCELVCP 608


>gi|238793374|ref|ZP_04637000.1| hypothetical protein yinte0001_34690 [Yersinia intermedia ATCC
           29909]
 gi|238727343|gb|EEQ18871.1| hypothetical protein yinte0001_34690 [Yersinia intermedia ATCC
           29909]
          Length = 674

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSVQVIQEKCIGCKTCMIACPFG 100


>gi|313650921|gb|EFS15321.1| protein aegA [Shigella flexneri 2a str. 2457T]
 gi|332755105|gb|EGJ85470.1| protein aegA [Shigella flexneri 4343-70]
 gi|332755505|gb|EGJ85869.1| protein aegA [Shigella flexneri K-671]
          Length = 636

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
 gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV E C  C    C + CPVD    E + F  I  ++C+ C  C   CP +AI
Sbjct: 546 VVNERCKKCGL--CKKACPVDAITWEKKQFAVIDNEKCVKCRECIVNCPFNAI 596



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CP     E   F+ ++ + C  CG+C+  CPVDAI  + + 
Sbjct: 533 CPARECAELIEFVVVN-ERCKKCGLCKKACPVDAITWEKKQ 572


>gi|227496950|ref|ZP_03927202.1| anaerobic dimethyl sulfoxide reductase, subunit B [Actinomyces
           urogenitalis DSM 15434]
 gi|226833558|gb|EEH65941.1| anaerobic dimethyl sulfoxide reductase, subunit B [Actinomyces
           urogenitalis DSM 15434]
          Length = 212

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TY  + +C  C++  C+EVCP     + E+  + +   +C+ C  C+  CP  A + D  
Sbjct: 67  TYYTSVSCNHCENPVCMEVCPTTAMSKREDGTVYVDQSKCVGCRYCQWACPYGAPQLDPR 126

Query: 61  PGL 63
            G 
Sbjct: 127 SGH 129


>gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 656

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C  + C   CPV     E +    I  ++CI CG C  ECP +A++
Sbjct: 606 DKCRGC--SKCSRNCPVQAIQGEIKKTFEIDKEKCIKCGQCIIECPFNAVE 654



 Score = 40.9 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +      I+ D+C  C  C   CPV AI+ + +   E
Sbjct: 590 CPGG-VCKALISYEINKDKCRGCSKCSRNCPVQAIQGEIKKTFE 632


>gi|62181355|ref|YP_217772.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|224584629|ref|YP_002638427.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|62128988|gb|AAX66691.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|224469156|gb|ACN46986.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|322715838|gb|EFZ07409.1| Formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
          Length = 202

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|238785613|ref|ZP_04629592.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
 gi|238713500|gb|EEQ05533.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
          Length = 207

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|328954388|ref|YP_004371722.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454712|gb|AEB10541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 271

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    +   + + +     CI C  C   CP  A   + +       
Sbjct: 134 CNHCDNPPCVRVCPTQATFRRPDGMVMMDMHRCIGCRYCMAACPFGARSFNWKDPRPYLK 193

Query: 68  KINSEY 73
           ++N  Y
Sbjct: 194 EVNMNY 199


>gi|300855721|ref|YP_003780705.1| putative Fe-S-cluster-binding protein [Clostridium ljungdahlii DSM
           13528]
 gi|300435836|gb|ADK15603.1| predicted Fe-S-cluster-binding protein [Clostridium ljungdahlii DSM
           13528]
          Length = 204

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-CFYEGENF-LAIHPDECIDCGVCEPECPVD 53
           Y +   C  C+   CV+VCP   C+   E+  + I  ++CI C  C   CP +
Sbjct: 53  YFLPVMCQQCEDPACVKVCPTGACYKRSEDGVIVIDKEKCIGCKSCHRACPYE 105


>gi|300854979|ref|YP_003779963.1| putative Fe-S cluster protein [Clostridium ljungdahlii DSM 13528]
 gi|300435094|gb|ADK14861.1| predicted Fe-S cluster protein [Clostridium ljungdahlii DSM 13528]
          Length = 344

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL-ELWL 67
           C  C  + C + CP +          I+ D+C+ C  C   CP  AI       + + + 
Sbjct: 191 CKGC--SACAKKCPQNAIIV-NRKARINKDKCVGCASCMAICPQGAIYHSWLGSMTKSFN 247

Query: 68  KINSEYA 74
           +  +EYA
Sbjct: 248 ERLAEYA 254


>gi|296135781|ref|YP_003643023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295795903|gb|ADG30693.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 275

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP  A + D + G
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRQEDGIVLVDSDKCIGCKYCSWACPYGAREYDEDRG 128


>gi|269929290|ref|YP_003321611.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788647|gb|ACZ40789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 282

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C+EVCP       E + + I  D C  C  C   CP   I
Sbjct: 78  SDVCKHCVQAGCLEVCPTGAIIRTEFDTVVIQADVCNGCRACISACPFGVI 128


>gi|78223461|ref|YP_385208.1| electron transfer flavoprotein subunit alpha [Geobacter
          metallireducens GS-15]
 gi|78194716|gb|ABB32483.1| Electron transfer flavoprotein, alpha subunit [Geobacter
          metallireducens GS-15]
          Length = 442

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +   CI C    C  VCPV+C    +     ++  +CI C  C   CP  A++    P  
Sbjct: 18 IAGACIACGAR-CQSVCPVNCVDMNDAGEPVVNSAKCIGCQKCVKICPATALEMYFTPEE 76

Query: 64 ELWLKINSEYATQWPNITTKKES 86
              KI  E A Q   +  + + 
Sbjct: 77 R---KILDELAAQGDPVEEEIDP 96


>gi|50084303|ref|YP_045813.1| putative iron-sulfur protein [Acinetobacter sp. ADP1]
 gi|49530279|emb|CAG67991.1| conserved hypothetical protein; putative iron-sulfur protein
           [Acinetobacter sp. ADP1]
          Length = 250

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKP-DTEPGLE 64
           + CI C  T C+  CPVD     G+    +  D C  C +C P CPVD I   +    L 
Sbjct: 76  DECIGC--TKCISACPVDAIIGSGKLMHTVLTDLCTGCELCIPPCPVDCIDLVEDREPLP 133

Query: 65  LWLKINSE 72
              + N+E
Sbjct: 134 TIAERNNE 141



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 73 IREDECIGCTKCISACPVDAI 93



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   C+  CPVDC 
Sbjct: 100 MHTVLTDLCTGCEL--CIPPCPVDCI 123


>gi|16761629|ref|NP_457246.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. CT18]
 gi|16766158|ref|NP_461773.1| hydrogenase-3 iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|29143113|ref|NP_806455.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|161615755|ref|YP_001589720.1| hypothetical protein SPAB_03546 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167550308|ref|ZP_02344065.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167994156|ref|ZP_02575248.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168262034|ref|ZP_02684007.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168464022|ref|ZP_02697939.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168820460|ref|ZP_02832460.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|198245498|ref|YP_002216824.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200386852|ref|ZP_03213464.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|205353796|ref|YP_002227597.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|207858115|ref|YP_002244766.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|213052194|ref|ZP_03345072.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E00-7866]
 gi|213580306|ref|ZP_03362132.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213648119|ref|ZP_03378172.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213854929|ref|ZP_03383169.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|25285331|pir||AH0846 formate hydrogenlyase chain 2 [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16421398|gb|AAL21732.1| hydrogenase-3, iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|16503930|emb|CAD05959.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29138746|gb|AAO70315.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
 gi|161365119|gb|ABX68887.1| hypothetical protein SPAB_03546 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|195633759|gb|EDX52173.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197940014|gb|ACH77347.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199603950|gb|EDZ02495.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|205273577|emb|CAR38564.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|205324786|gb|EDZ12625.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205327950|gb|EDZ14714.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205342944|gb|EDZ29708.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205349088|gb|EDZ35719.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|206709918|emb|CAR34272.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
 gi|261247988|emb|CBG25821.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|267994975|gb|ACY89860.1| hydrogenase-3 iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301159412|emb|CBW18930.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|312913870|dbj|BAJ37844.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|320087255|emb|CBY97020.1| Formate hydrogenlyase subunit 2 FHL subunit 2; Hydrogenase-3
          component B [Salmonella enterica subsp. enterica
          serovar Weltevreden str. 2007-60-3289-1]
 gi|321223404|gb|EFX48470.1| Formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|322614329|gb|EFY11260.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322621606|gb|EFY18459.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322624467|gb|EFY21300.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322628798|gb|EFY25581.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322633475|gb|EFY30217.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322635949|gb|EFY32657.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322639657|gb|EFY36342.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322646840|gb|EFY43343.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650608|gb|EFY47013.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654780|gb|EFY51099.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659000|gb|EFY55253.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322664433|gb|EFY60627.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322668318|gb|EFY64475.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673702|gb|EFY69803.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322677763|gb|EFY73826.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322681407|gb|EFY77439.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322683809|gb|EFY79819.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323131203|gb|ADX18633.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|323193802|gb|EFZ79005.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323200272|gb|EFZ85354.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323203225|gb|EFZ88254.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323205528|gb|EFZ90493.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323210039|gb|EFZ94942.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323216342|gb|EGA01069.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323221090|gb|EGA05521.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323226911|gb|EGA11093.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323230805|gb|EGA14923.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323234844|gb|EGA18930.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323238883|gb|EGA22933.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323241583|gb|EGA25614.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323248270|gb|EGA32206.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323251146|gb|EGA35019.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323256029|gb|EGA39767.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323263164|gb|EGA46702.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323264331|gb|EGA47837.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323271158|gb|EGA54586.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326624583|gb|EGE30928.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
 gi|326628904|gb|EGE35247.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
 gi|332989724|gb|AEF08707.1| hydrogenase-3 iron-sulfur subunit [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 202

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|332968212|gb|EGK07289.1| ferredoxin [Kingella kingae ATCC 23330]
          Length = 83

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          MT  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MTLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E        +N  Y
Sbjct: 59 ILIDEEHPETHDELMNKYY 77


>gi|312883748|ref|ZP_07743468.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368598|gb|EFP96130.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 196

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 16/32 (50%)

Query: 24  DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           D   E +    IH D CI C  C   CPVDAI
Sbjct: 98  DLGNEVKTVAFIHEDMCIGCTKCIQACPVDAI 129


>gi|331684511|ref|ZP_08385103.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H299]
 gi|331078126|gb|EGI49332.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H299]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|291086289|ref|ZP_06355289.2| hydrogenase-4 component A [Citrobacter youngae ATCC 29220]
 gi|291068758|gb|EFE06867.1| hydrogenase-4 component A [Citrobacter youngae ATCC 29220]
          Length = 170

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 16 QLCHQCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 66


>gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
 gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
          Length = 512

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPV 52
           ++Y + +NCI C    C   CPV C     +    I  ++CI CG C   CP+
Sbjct: 454 LSYKIEDNCIGCG--TCKRNCPVGCISGKVKEKHTIDQEKCIKCGTCYNVCPI 504



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
               D CI CG C+  CPV  I
Sbjct: 456 YKIEDNCIGCGTCKRNCPVGCI 477


>gi|154496500|ref|ZP_02035196.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
 gi|150274133|gb|EDN01224.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
          Length = 214

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E CI C+   C  VCPV+C   G     I    C+ CG C   CPV A++
Sbjct: 155 IIPEKCIGCQG--CRSVCPVNCIS-GTIPRNIDTAHCLHCGNCLSICPVGAVE 204



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           EN   I P++CI C  C   CPV+ I
Sbjct: 150 ENGYRIIPEKCIGCQGCRSVCPVNCI 175


>gi|325264660|ref|ZP_08131389.1| hydrogenase subunit (ferredoxin) [Clostridium sp. D5]
 gi|324029952|gb|EGB91238.1| hydrogenase subunit (ferredoxin) [Clostridium sp. D5]
          Length = 417

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKH-TDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C++   C   C  D    GE+  L I+PD CI C  C   C  D I
Sbjct: 49  VFNEPCEECEYERACQNSCIFDAIEAGEDGKLFINPDLCIGCEACIEACKTDKI 102


>gi|299771076|ref|YP_003733102.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
 gi|298701164|gb|ADI91729.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
          Length = 263

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 87  IREDECIGCTKCISACPVDAI 107


>gi|298675341|ref|YP_003727091.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
 gi|298288329|gb|ADI74295.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 789

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V T+ C  C    C +VC         +   +    C  CG C   CP DAI    + 
Sbjct: 573 AFVDTDKCTGCG--ICQDVCKFGKIKLYNHKAEVDELSCHGCGSCSAACPEDAIYMRNQT 630

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 631 DAQIHSQIEAAL 642



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVD---CFYEG---------------ENFLAIHPDECIDCG 44
           YV  + C  C   +C  VCPV+    F  G                    I+ + C+ CG
Sbjct: 238 YVSEDKCKGCI-EECSSVCPVEISNPFDYGIGKIKAISMPFPQAVPQCAYINDEYCVGCG 296

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C   CP DA+  + +     +
Sbjct: 297 LCRQVCPADAVDYEQKEEEFSF 318


>gi|330007988|ref|ZP_08306132.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
 gi|328535262|gb|EGF61753.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
          Length = 175

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
              C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P +  
Sbjct: 55  ATACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRH 114


>gi|324111349|gb|EGC05331.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
          B253]
 gi|325496235|gb|EGC94094.1| hydrogenase 3, Fe-S subunit [Escherichia fergusonii ECD227]
          Length = 203

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|308051341|ref|YP_003914907.1| thiosulfate reductase subunit beta [Ferrimonas balearica DSM 9799]
 gi|307633531|gb|ADN77833.1| thiosulfate reductase beta subunit [Ferrimonas balearica DSM 9799]
          Length = 190

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           +C  C++  CV VCP    Y GE+ +  I  D+C+ C  C   CP     I P+T    +
Sbjct: 59  SCEQCENAPCVHVCPTGAAYVGEDGIVSIKEDKCVGCLYCVAACPYKVRFINPETRVPDK 118


>gi|295103163|emb|CBL00707.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Faecalibacterium prausnitzii
          SL3/3]
          Length = 395

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVD 53
          V   C  C  T C ++CP +C       EG  +  ++ D+CI CG+CE  CP  
Sbjct: 7  VESECCGC--TACEQICPRNCIQMRKNEEGFLYPVVNNDKCIKCGLCEKVCPFG 58


>gi|300779506|ref|ZP_07089364.1| ferredoxin [Chryseobacterium gleum ATCC 35910]
 gi|300505016|gb|EFK36156.1| ferredoxin [Chryseobacterium gleum ATCC 35910]
          Length = 299

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
          E C     + CV +CPV+     E +         L +  D CI CGVCEPECP +AI
Sbjct: 23 ERC--EGFSHCVNICPVEALTLVEGYVNEILNIRALYVQLDTCIMCGVCEPECPTEAI 78


>gi|168230913|ref|ZP_02655971.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168235884|ref|ZP_02660942.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|168242582|ref|ZP_02667514.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|194442481|ref|YP_002042094.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451115|ref|YP_002046813.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194471624|ref|ZP_03077608.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194735766|ref|YP_002115805.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197247841|ref|YP_002147750.1| formate hydrogenlyase subunit B [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197265508|ref|ZP_03165582.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|204928192|ref|ZP_03219392.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|238909619|ref|ZP_04653456.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|194401144|gb|ACF61366.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194409419|gb|ACF69638.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194457988|gb|EDX46827.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194711268|gb|ACF90489.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197211544|gb|ACH48941.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197243763|gb|EDY26383.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197290921|gb|EDY30275.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. SL480]
 gi|204322514|gb|EDZ07711.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205334452|gb|EDZ21216.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205338150|gb|EDZ24914.1| formate hydrogenlyase, subunit B [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
          Length = 202

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|91212084|ref|YP_542070.1| formate hydrogenlyase subunit 2 [Escherichia coli UTI89]
 gi|117624956|ref|YP_853944.1| hydrogenase 3, Fe-S subunit [Escherichia coli APEC O1]
 gi|218559714|ref|YP_002392627.1| hydrogenase 3, Fe-S subunit [Escherichia coli S88]
 gi|237706652|ref|ZP_04537133.1| hydrogenase 3 [Escherichia sp. 3_2_53FAA]
 gi|91073658|gb|ABE08539.1| formate hydrogenlyase subunit 2 [Escherichia coli UTI89]
 gi|115514080|gb|ABJ02155.1| hydrogenase 3, Fe-S subunit [Escherichia coli APEC O1]
 gi|218366483|emb|CAR04235.1| hydrogenase 3, Fe-S subunit [Escherichia coli S88]
 gi|226899692|gb|EEH85951.1| hydrogenase 3 [Escherichia sp. 3_2_53FAA]
 gi|294489596|gb|ADE88352.1| formate hydrogenlyase, subunit B [Escherichia coli IHE3034]
 gi|307625705|gb|ADN70009.1| hydrogenase 3, Fe-S subunit [Escherichia coli UM146]
 gi|315289279|gb|EFU48674.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|323951057|gb|EGB46933.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957064|gb|EGB52789.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 203

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|262368735|ref|ZP_06062064.1| electron transport complex protein [Acinetobacter johnsonii SH046]
 gi|262316413|gb|EEY97451.1| electron transport complex protein [Acinetobacter johnsonii SH046]
          Length = 264

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+   +I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHSILTDLCTGCELCIPPCPVDCI 137



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 87  IREDECIGCTKCISACPVDAI 107


>gi|224024973|ref|ZP_03643339.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM
           18228]
 gi|224018209|gb|EEF76207.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM
           18228]
          Length = 462

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 2   TYVVTENCILCKHT--------------DCVEVCPVDCFYEGE-NFLAIHPDECIDCGVC 46
            ++  + CI C                  C E CPV    + E N   I+ D+CI CG C
Sbjct: 146 AHIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHNIEHINEDKCIYCGKC 205

Query: 47  EPECPVDAIKP 57
              CP  AI  
Sbjct: 206 LNACPFGAIFE 216



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y V+  C  C    C   CP     F +      I  D CI CG+C   CP  AI  
Sbjct: 114 YEVSNLCRGCVARSCYMNCPKGAVHFDKKTGQAHIDHDTCISCGICHKSCPYHAIVY 170


>gi|322658911|gb|EFY55165.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|323243568|gb|EGA27587.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 142

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 60  AYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 116


>gi|27904653|ref|NP_777779.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372472|sp|Q89AT9|NUOI_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|27904050|gb|AAO26884.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 180

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C                F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACGL--CSVVCPVSCISLKKSTLKNNKWYPKFFRINLSRCIFCGLCEEACPTLAIQ 115

Query: 57  PDTEPGLELW 66
             ++  L  +
Sbjct: 116 LISDVELSEY 125


>gi|332879377|ref|ZP_08447074.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682797|gb|EGJ55697.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 318

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+ CP +      N   I P++C  C  CE  CP  AI     P  +  +
Sbjct: 223 SCIGCG--KCVKTCPFEAITLNNNLAYIDPEKCKLCRKCEEACPKGAIHAINFPPRKPKV 280

Query: 68  K 68
           +
Sbjct: 281 E 281



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
              DCV  C               +  + C  CG C   CP   I+
Sbjct: 147 GGGDCVAACQFGALSINPETGLPEVDEERCTACGACVKTCPRRVIE 192


>gi|227501590|ref|ZP_03931639.1| possible formate dehydrogenase beta subunit [Corynebacterium
           accolens ATCC 49725]
 gi|227077615|gb|EEI15578.1| possible formate dehydrogenase beta subunit [Corynebacterium
           accolens ATCC 49725]
          Length = 352

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   + G
Sbjct: 122 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGG 179


>gi|118474328|ref|YP_891343.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413554|gb|ABK81974.1| hydrogenase-3 small subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 211

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C  C    C  VCP         ++ +H   CI C +C   CP  AI  D+
Sbjct: 49  VMPNQCRQCDDAPCALVCPSSALRNENGYVEMHEQLCIGCALCVNACPYGAIHLDS 104


>gi|15679728|ref|NP_276846.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622867|gb|AAB86206.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 143

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C  +   C+ +CP D   E +  + I  D CI CG+C   CPV AI
Sbjct: 36 CMHCSPERAPCLNICPEDAIVEVDGAVVILEDRCIGCGLCRDACPVGAI 84



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG--VCEPECPVDAIKPDTEP 61
           + CI C    C + CPV      E  +A+  D CID    +C   CP  A+   +E 
Sbjct: 67  DRCIGCGL--CRDACPVGAITLNERGVAVKCDLCIDRDKPLCVMVCPKGALSESSED 121


>gi|303239632|ref|ZP_07326157.1| hydrogenase large subunit domain protein [Acetivibrio
          cellulolyticus CD2]
 gi|302592803|gb|EFL62526.1| hydrogenase large subunit domain protein [Acetivibrio
          cellulolyticus CD2]
          Length = 446

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +     +    I  + CIDCG C   CP  A
Sbjct: 13 EKCKGC--TNCIKRCPTEAIRVRKGKARIIAERCIDCGECIRVCPYHA 58


>gi|238751995|ref|ZP_04613480.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
 gi|238709829|gb|EEQ02062.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia rohdei
           ATCC 43380]
          Length = 205

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++  C  C    CV  CP    +  E +  + ++ D C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFDA 118

Query: 60  EPGL 63
              L
Sbjct: 119 RKKL 122


>gi|255324416|ref|ZP_05365533.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311740730|ref|ZP_07714557.1| 4Fe-4S ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
 gi|255298322|gb|EET77622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311304250|gb|EFQ80326.1| 4Fe-4S ferredoxin [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 352

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   + G
Sbjct: 122 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGG 179


>gi|170026045|ref|YP_001722550.1| putative oxidoreductase Fe-S binding subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|169752579|gb|ACA70097.1| glutamate synthase, small subunit [Yersinia pseudotuberculosis
           YPIII]
          Length = 671

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFG 100


>gi|218778463|ref|YP_002429781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759847|gb|ACL02313.1| Sulfite reduction-associated complex , DsrO [Desulfatibacillum
           alkenivorans AK-01]
          Length = 271

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 5   VTEN-----CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           VT+N     C  C++  CV VCP    ++ E+ + I     CI C  C   CP  +   +
Sbjct: 124 VTQNEVLVLCNQCENPACVRVCPTKATFQREDGIVIMDFHRCIGCRFCMAACPYGSRSFN 183

Query: 59  TEPGLELWLKINSEYATQWPNITTKK 84
            +      L+IN E+ T+   +  K 
Sbjct: 184 FKDPRIASLEINPEFPTRMKGVVEKC 209


>gi|49658944|emb|CAF28571.1| putative oxidoreductase [Yersinia pseudotuberculosis]
          Length = 671

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFG 100


>gi|153948456|ref|YP_001402638.1| oxidoreductase Fe-S binding subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|152959951|gb|ABS47412.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pseudotuberculosis IP 31758]
          Length = 671

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFG 100


>gi|332971171|gb|EGK10135.1| NADH-quinone oxidoreductase subunit I [Psychrobacter sp.
           1501(2011)]
          Length = 182

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVACISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  +++ N  Y  +   I+   +   
Sbjct: 118 LTPDFELGEYVRQNLVYEKEHLLISGPGKYPD 149


>gi|313887911|ref|ZP_07821590.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846077|gb|EFR33459.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 305

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C + CP D  +   N  +I  D+CI+CG+C  +CP  AI  +   
Sbjct: 217 CIGCG--ICEKNCPKDAIHVENNLASIDYDKCINCGICVSKCPTGAIYCEYPE 267



 Score = 40.9 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C    CV VC  D  +       +  ++C+ C  C   CP
Sbjct: 144 CGGGTCVSVCEFDAIHMVNGVAVVDKEKCVACMKCINICP 183


>gi|283853654|ref|ZP_06370887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio sp. FW1012B]
 gi|283570956|gb|EFC18983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio sp. FW1012B]
          Length = 583

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    C+  CPV     EG     + P+ CI CG C   CP  A
Sbjct: 8  YTIETECQDC--YRCLRQCPVKAIQVEGGRATVV-PELCIACGQCVAACPSHA 57


>gi|119873469|ref|YP_931476.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum islandicum DSM 4184]
 gi|119674877|gb|ABL89133.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum islandicum DSM 4184]
          Length = 282

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C++  CV  CP            + +  D CI C  C   CP +A+  D
Sbjct: 46 CNHCENAPCVNSCPTGALRHNPETGIVQLDKDLCIGCRACTRACPYNAVYID 97



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 24/71 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPV 52
           + CI C    C   CP +        + I P     D+C  C           C   CP 
Sbjct: 77  DLCIGC--RACTRACPYNA-------VYIDPRTNKADKCTFCEHLVYSGLLPACVAACPT 127

Query: 53  DA-IKPDTEPG 62
            A I  D E  
Sbjct: 128 GARIFGDIEDP 138


>gi|78043320|ref|YP_359720.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995435|gb|ABB14334.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 349

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          K   CV VCP +  ++    +AI  +EC +CG C+  CP  AI
Sbjct: 29 KCGKCVTVCPANAIFKDGEKIAIKKEECTNCGFCKAVCPTGAI 71



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V+ E C  C    C  +CP       E  L      C++C +C   CP
Sbjct: 240 VIGE-CNGCGV--CERLCPTGALRLKEGELTFKAHLCLNCSLCVESCP 284


>gi|89893344|ref|YP_516831.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219666616|ref|YP_002457051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332792|dbj|BAE82387.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219536876|gb|ACL18615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 189

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVD 53
            ++  C  C++ +C+ VCPV  + + E+ + IH  E CI C +C   CP D
Sbjct: 54  FISVACNHCQNPECLRVCPVKAYTKREDGIVIHDQERCIGCKLCTMACPYD 104


>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           E C  C    C + CP +           I  D+CI CG C  +CP DAI 
Sbjct: 546 EKCKGCG--ICAKNCPTNAISGKVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594



 Score = 41.7 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I P++C  CG+C   CP +AI
Sbjct: 530 CPAG-VCQALLRFRIDPEKCKGCGICAKNCPTNAI 563


>gi|218547768|ref|YP_002381559.1| hydrogenase 3, Fe-S subunit [Escherichia fergusonii ATCC 35469]
 gi|306812398|ref|ZP_07446596.1| hydrogenase 3, Fe-S subunit [Escherichia coli NC101]
 gi|331648442|ref|ZP_08349530.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M605]
 gi|218355309|emb|CAQ87916.1| hydrogenase 3, Fe-S subunit [Escherichia fergusonii ATCC 35469]
 gi|222034418|emb|CAP77160.1| Formate hydrogenlyase subunit 2 [Escherichia coli LF82]
 gi|305854436|gb|EFM54874.1| hydrogenase 3, Fe-S subunit [Escherichia coli NC101]
 gi|312947253|gb|ADR28080.1| hydrogenase 3, Fe-S subunit [Escherichia coli O83:H1 str. NRG
          857C]
 gi|315298788|gb|EFU58042.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|320194862|gb|EFW69491.1| Formate hydrogenlyase subunit 2 [Escherichia coli WV_060327]
 gi|323188862|gb|EFZ74147.1| hydrogenase-4 component A [Escherichia coli RN587/1]
 gi|330908755|gb|EGH37269.1| formate hydrogenlyase subunit 2 [Escherichia coli AA86]
 gi|331042189|gb|EGI14331.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M605]
          Length = 203

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|167044386|gb|ABZ09063.1| putative ABC transporter [uncultured marine crenarchaeote
          HF4000_APKG6D3]
          Length = 592

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7  ENCI--LCKHTDCVEVCPV-----DCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C    C   +C++ CPV     DC    E  N   I  D C  CG+C   CP +AI
Sbjct: 11 ELCQPKKCG-LECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67


>gi|167043306|gb|ABZ08011.1| putative ABC transporter [uncultured marine crenarchaeote
          HF4000_ANIW141M18]
          Length = 592

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7  ENCI--LCKHTDCVEVCPV-----DCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C    C   +C++ CPV     DC    E  N   I  D C  CG+C   CP +AI
Sbjct: 11 ELCQPKKCG-LECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67


>gi|295106199|emb|CBL03742.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 206

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C +VCP    ++      +++  D+C+ CG C   CP +A K D 
Sbjct: 60  SYPLSLSCNHCDDPACTKVCPTGAMHKDAETGLVSVDADKCVGCGYCHMACPYNAPKVDR 119

Query: 60  EPGL 63
             G 
Sbjct: 120 SKGH 123


>gi|294339944|emb|CAZ88307.1| putative Iron-sulfur cluster ferredoxin [Thiomonas sp. 3As]
          Length = 275

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP  A + D + G
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRQEDGIVLVDSDKCIGCKYCSWACPYGAREYDEDRG 128


>gi|257790376|ref|YP_003180982.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488822|ref|ZP_07947354.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833713|ref|ZP_08166128.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474273|gb|ACV54593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912076|gb|EFV33653.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485253|gb|EGC87723.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 193

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           Y +   C  C+   CV VCP    + + +  + +  ++CI C  C   CP  
Sbjct: 53  YFLPTMCQQCQDAPCVNVCPTGASYRDADGMVLVDKEKCIGCKYCMMACPYG 104


>gi|254172052|ref|ZP_04878728.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
 gi|214033948|gb|EEB74774.1| 4Fe-4S cluster-binding protein [Thermococcus sp. AM4]
          Length = 174

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          NC  C    C+ VCP    Y  E+    IH ++CI C  C   CP      
Sbjct: 47 NCKHCDDAPCLRVCPTHAIYRDEDGAVRIHEEKCIGCLACLQVCPYGVPFY 97


>gi|206576514|ref|YP_002236930.1| formate hydrogenlyase, subunit B [Klebsiella pneumoniae 342]
 gi|288933886|ref|YP_003437945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
          variicola At-22]
 gi|206565572|gb|ACI07348.1| formate hydrogenlyase, subunit B [Klebsiella pneumoniae 342]
 gi|288888615|gb|ADC56933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
          variicola At-22]
          Length = 202

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QMCHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|158520200|ref|YP_001528070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509026|gb|ABW65993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 386

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TE C LC    CV+ CPV+  Y          +NF+A++  EC+ CGVC   C  +AI+
Sbjct: 304 TEECNLC--MACVDKCPVNALYHHKPHKDDGSDNFIALNESECLGCGVCVMACDNEAIQ 360



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK---PDTEPGLELWLKIN 70
            I  +EC  C  C  +CPV+A+    P  + G + ++ +N
Sbjct: 301 VIKTEECNLCMACVDKCPVNALYHHKPHKDDGSDNFIALN 340


>gi|149912039|ref|ZP_01900632.1| Electron transport complex protein rnfB [Moritella sp. PE36]
 gi|149804900|gb|EDM64935.1| Electron transport complex protein rnfB [Moritella sp. PE36]
          Length = 182

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
             ++ E+CI C  T C++ CPVD        +  +  D C  C +C   CP D I  +  
Sbjct: 108 ARIIEEDCIGC--TKCIQACPVDAIAGATRAMHTVIVDSCTGCKLCVAPCPTDCIVMEPV 165

Query: 61  PGLELW 66
                W
Sbjct: 166 QAAWKW 171


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  + C  C    C   CP +    E      I+ ++C+ CG+C  +CP  AI+
Sbjct: 571 YVINPDICKGCGL--CARSCPQNAITGERGKPYTINQEKCVKCGLCASKCPFKAIE 624



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CP            I+PD C  CG+C   CP +AI  +
Sbjct: 559 ECPSG-MCTAFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|157370665|ref|YP_001478654.1| electron transport protein HydN [Serratia proteamaculans 568]
 gi|157322429|gb|ABV41526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 180

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP          + +  + CI C  C   CP  A++  T P
Sbjct: 58  CRQCEDAPCSNVCPNGAISRTNGMVLVMQERCIGCKTCVVACPYGAMEVITRP 110


>gi|33519937|ref|NP_878769.1| NADH dehydrogenase subunit I [Candidatus Blochmannia floridanus]
 gi|81666916|sp|Q7VRV9|NUOI_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|33504283|emb|CAD83175.1| NADH dehydrogenase I chain I [Candidatus Blochmannia floridanus]
          Length = 181

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         EG     F  I+   CI CG+CE  CP  AI+
Sbjct: 59  ERCVACNL--CAVSCPVGCISLKKSENSEGRWYPEFFRINFSRCIFCGMCEEACPTAAIQ 116

Query: 57  PDTEPGLELW 66
             ++  +  +
Sbjct: 117 LISDFEMSDY 126


>gi|323701707|ref|ZP_08113378.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323533243|gb|EGB23111.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 92

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          Y +T  C  C    C +VCP    Y  E+   I+   C  CG C   CP  AI  +T+  
Sbjct: 7  YFITNKCKNC--AQCQDVCPEKAIYAAEDKYCINDARCNGCGSCVEICPEQAIVKETD-- 62

Query: 63 LELWLKINSE 72
             +  IN E
Sbjct: 63 --HFRIINRE 70


>gi|320196305|gb|EFW70929.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
          WV_060327]
          Length = 636

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|261821988|ref|YP_003260094.1| cytochrome C nitrite reductase, Fe-S protein [Pectobacterium
           wasabiae WPP163]
 gi|261606001|gb|ACX88487.1| cytochrome c nitrite reductase, Fe-S protein [Pectobacterium
           wasabiae WPP163]
          Length = 223

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP     I P T+   
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYQVRFIHPQTKTAD 150

Query: 64  E 64
           +
Sbjct: 151 K 151


>gi|218701216|ref|YP_002408845.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI39]
 gi|218371202|emb|CAR19033.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI39]
          Length = 203

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|153002602|ref|YP_001368283.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151367220|gb|ABS10220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 553

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYLNKVVSRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469



 Score = 33.6 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 19/39 (48%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            ++++ ++C  C  C   CP  A++   +     +++ N
Sbjct: 415 KVSVNVEKCTMCMSCVAICPTVALQDGGDKPALHFIEQN 453


>gi|51894428|ref|YP_077119.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
 gi|51858117|dbj|BAD42275.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
          Length = 194

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C   CPV    + +  + +  + CI C  C   CP  A++
Sbjct: 62  CRHCEDAPCANACPVGAITQKDGIIDVDQETCIGCKTCVLACPFGAME 109


>gi|85706216|ref|ZP_01037311.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85669380|gb|EAQ24246.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 260

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDAAEG 143


>gi|331696235|ref|YP_004332474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
 gi|326950924|gb|AEA24621.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudonocardia dioxanivorans CB1190]
          Length = 286

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP       E+    +  D C  CG C P CP   I
Sbjct: 105 SDVCKHCTHAACLDVCPTGSLIRTEHGTVLVQEDICNGCGYCIPACPYGVI 155


>gi|302184712|ref|ZP_07261385.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae 642]
          Length = 291

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-DECTGCDLCIAPCPVDCIE 137



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    C+  CPVDC   
Sbjct: 113 MHTVIIDECTGCDL--CIAPCPVDCIEM 138


>gi|217075100|gb|ACJ85910.1| unknown [Medicago truncatula]
          Length = 222

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAICPAQAITIEAEERED 147



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|168208932|ref|ZP_02634557.1| F420H2:quinone oxidoreductase [Clostridium perfringens B str.
          ATCC 3626]
 gi|170712785|gb|EDT24967.1| F420H2:quinone oxidoreductase [Clostridium perfringens B str.
          ATCC 3626]
          Length = 389

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          E C +C    C+ +CP +C       E  N+  I+  +CIDCG C   CPV
Sbjct: 8  ERCTIC--QACINICPKECIKLDFVKEEFNYPIINKIKCIDCGACYKVCPV 56


>gi|163740485|ref|ZP_02147879.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386343|gb|EDQ10718.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 264

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++ D CI CG+C   CP  A + D   G
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEDNCIGCGLCAWSCPYGARELDLAEG 143


>gi|51594748|ref|YP_068939.1| oxidoreductase Fe-S binding subunit [Yersinia pseudotuberculosis IP
           32953]
 gi|186893755|ref|YP_001870867.1| putative oxidoreductase Fe-S binding subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588030|emb|CAH19636.1| putative oxidoreductase [Yersinia pseudotuberculosis IP 32953]
 gi|186696781|gb|ACC87410.1| glutamate synthase, small subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 671

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNSIQVIQEKCIGCKTCMIACPFG 100


>gi|238796520|ref|ZP_04640028.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
 gi|238719725|gb|EEQ11533.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
          Length = 207

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|320180854|gb|EFW55777.1| Formate hydrogenlyase subunit 2 [Shigella boydii ATCC 9905]
          Length = 203

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|294053608|ref|YP_003547266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coraliomargarita akajimensis DSM 45221]
 gi|293612941|gb|ADE53096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coraliomargarita akajimensis DSM 45221]
          Length = 309

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV+VCPV+  + E +  +A+  + CI C  CE  CP  A + +         
Sbjct: 164 CQQCDNPPCVDVCPVEATWKEKDGIVAVDYNWCIGCRYCEAACPYHARRFNWTKPQIPKE 223

Query: 68  KIN 70
           ++N
Sbjct: 224 EVN 226


>gi|184157307|ref|YP_001845646.1| NADH:ubiquinone oxidoreductase subunit RnfB [Acinetobacter
           baumannii ACICU]
 gi|332873434|ref|ZP_08441387.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
 gi|183208901|gb|ACC56299.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Acinetobacter baumannii ACICU]
 gi|322507192|gb|ADX02646.1| RnfB [Acinetobacter baumannii 1656-2]
 gi|323517170|gb|ADX91551.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738380|gb|EGJ69254.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
          Length = 263

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           PV      +   AI   DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRMKAIIREDECIGCTKCINACPVDAI 107


>gi|6226880|sp|P80269|NDUS8_SOLTU RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|668985|emb|CAA59062.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 229

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 128 ERCIACKLCEAICPAQAITIEAEERED 154



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 169 CIYCGF--CQEACPVDAIVEGPNF 190


>gi|332093036|gb|EGI98102.1| protein aegA [Shigella boydii 3594-74]
          Length = 636

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|330912249|gb|EGH40759.1| glutamate synthase [NADPH] small chain [Escherichia coli AA86]
          Length = 636

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|313681563|ref|YP_004059301.1| 4fe-4S ferredoxin [Sulfuricurvum kujiense DSM 16994]
 gi|313154423|gb|ADR33101.1| 4Fe-4S ferredoxin [Sulfuricurvum kujiense DSM 16994]
          Length = 84

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ + CI C    C E CP+D   EG+    I PD C +C        C   CPVD 
Sbjct: 1  MPLLIVDECIACD--ACREECPMDAIEEGDPIYIIDPDRCTECVGTYDEPACIAVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDKD 64


>gi|269217314|ref|ZP_06161168.1| thiosulfate reductase electron transport protein phsb [Slackia
           exigua ATCC 700122]
 gi|269129451|gb|EEZ60536.1| thiosulfate reductase electron transport protein phsb [Slackia
           exigua ATCC 700122]
          Length = 179

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           V+   C+ C+   C  VCP    Y  E+ +  I    CI C  C   CP  A
Sbjct: 53  VIPSQCMHCEDAPCQTVCPTGATYTNEDGIVCIDHGRCIGCKYCMAACPYRA 104


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  + C  C    C   CP +    E      I+ ++C+ CG+C  +CP  AI+
Sbjct: 571 YVINPDICKGCGL--CARSCPQNAITGERGKPYTINQEKCVKCGLCASKCPFKAIE 624



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CP            I+PD C  CG+C   CP +AI  +
Sbjct: 559 ECPSG-MCTAFKKYVINPDICKGCGLCARSCPQNAITGE 596


>gi|148974078|ref|ZP_01811611.1| tetrathionate reductase, subunit B [Vibrionales bacterium SWAT-3]
 gi|145965775|gb|EDK31023.1| tetrathionate reductase, subunit B [Vibrionales bacterium SWAT-3]
          Length = 263

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  C++VCPV   ++ E+ +  +  + C+ C  C   CP DA
Sbjct: 112 CNHCDNAPCIKVCPVQATFQREDGIVMVDNERCVACAYCVQACPYDA 158


>gi|126460103|ref|YP_001056381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249824|gb|ABO08915.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 264

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCPVD     E   + I  D+CI CG C   CP    +   +
Sbjct: 75  CFHCYSAVCALVCPVDAHIVTEYGAVVIQTDKCIGCGRCAAVCPYGVPRQGAD 127



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAIKP 57
           T+ CI C    C  VCP     +G +      D C+D         C   CP  A+K 
Sbjct: 104 TDKCIGCG--RCAAVCPYGVPRQGADRRYRKCDLCVDRAAEGKPPACVEACPTGALKF 159


>gi|254229650|ref|ZP_04923061.1| Fe-S-cluster-containing hydrogenase components 1 [Vibrio sp. Ex25]
 gi|262393807|ref|YP_003285661.1| tetrathionate reductase subunit B [Vibrio sp. Ex25]
 gi|151937849|gb|EDN56696.1| Fe-S-cluster-containing hydrogenase components 1 [Vibrio sp. Ex25]
 gi|262337401|gb|ACY51196.1| tetrathionate reductase subunit B [Vibrio sp. Ex25]
          Length = 255

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C++  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCENPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|320200025|gb|EFW74614.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
          EC4100B]
          Length = 636

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|312967752|ref|ZP_07781967.1| protein aegA [Escherichia coli 2362-75]
 gi|312287949|gb|EFR15854.1| protein aegA [Escherichia coli 2362-75]
          Length = 636

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|238896181|ref|YP_002920917.1| hydrogenase 3 iron-sulfur subunit [Klebsiella pneumoniae
          NTUH-K2044]
 gi|238548499|dbj|BAH64850.1| hydrogenase 3 iron-sulfur subunit [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 202

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QMCHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|198275297|ref|ZP_03207828.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135]
 gi|198271880|gb|EDY96150.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135]
          Length = 491

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y V+  C  C    C   CP     F +      I  D+CI CG+C   CP  AI  
Sbjct: 114 YEVSNLCRGCVARSCYMNCPKGAVHFNKKTGQAQIDHDKCISCGICHKSCPYHAIVY 170



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 15/66 (22%)

Query: 7   ENCILCKHT--------------DCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + CI C                  C E CPV    + E+++  I   +CI CG C   CP
Sbjct: 151 DKCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHYIEHIDESKCIYCGKCLNACP 210

Query: 52  VDAIKP 57
             AI  
Sbjct: 211 FGAIFE 216


>gi|170679927|ref|YP_001743666.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
 gi|170517645|gb|ACB15823.1| dimethylsulfoxide reductase, B subunit [Escherichia coli SMS-3-5]
          Length = 205

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y ++ +C  C    C +VCP    ++ E+ F+ +  D CI    C   CP  A + + E
Sbjct: 60  AYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGYRYCHMACPYGAPQYNAE 119

Query: 61  PGL 63
            G 
Sbjct: 120 KGH 122


>gi|91202589|emb|CAJ72228.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 566

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 23/73 (31%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---------------------EGENFLAIHPDECID 42
            + E CILC    C++VCP +C                       E +  + I  ++CI 
Sbjct: 486 FIDEKCILCGG--CIDVCPYNCISMVSRENISLPDSLRNEENIPEEWDAAMIIDEEKCIR 543

Query: 43  CGVCEPECPVDAI 55
           CG+C   CP  AI
Sbjct: 544 CGLCVKRCPTRAI 556


>gi|194426242|ref|ZP_03058797.1| protein aegA [Escherichia coli B171]
 gi|194415550|gb|EDX31817.1| protein aegA [Escherichia coli B171]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|330818356|ref|YP_004362061.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia gladioli BSR3]
 gi|327370749|gb|AEA62105.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia gladioli BSR3]
          Length = 90

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHAETQ 69


>gi|289626586|ref|ZP_06459540.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647568|ref|ZP_06478911.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867251|gb|EGH01960.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 290

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIVDECTGCDL--CVAPCPVDCIEM 138


>gi|212224166|ref|YP_002307402.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus
           onnurineus NA1]
 gi|212009123|gb|ACJ16505.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus
           onnurineus NA1]
          Length = 212

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V   C  C+   C+E CP        E F+ ++ ++CI C +C   CP    K + E
Sbjct: 65  VPMRCQHCEDAPCMEACPTGAISRTKEGFVVLNANKCIGCLMCVMACPFGHPKFEPE 121


>gi|157377178|ref|YP_001475778.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319552|gb|ABV38650.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 190

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ +  I  D+C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIVTIKEDKCVGCMYCVAACPY 104


>gi|114564835|ref|YP_752349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336128|gb|ABI73510.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 220

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +Y  + +C  C    CV+ CP    +   E+ L  +H D CI C  C   CP DA + D
Sbjct: 77  SYYTSISCNHCNEPVCVKACPTGAMHKRREDGLVLVHTDLCIGCNSCAEACPYDAPQLD 135


>gi|320325636|gb|EFW81698.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327081|gb|EFW83095.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876899|gb|EGH11048.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 290

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIVDECTGCDL--CVAPCPVDCIEM 138


>gi|167771184|ref|ZP_02443237.1| hypothetical protein ANACOL_02542 [Anaerotruncus colihominis DSM
          17241]
 gi|167666603|gb|EDS10733.1| hypothetical protein ANACOL_02542 [Anaerotruncus colihominis DSM
          17241]
          Length = 501

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          +V E C  C  T C + CPV      E    +  ++C +CGVC   C   AI   ++   
Sbjct: 3  IVNEKCKGC--TICSKNCPVGAIEMVERKAVVSAEKCCECGVCTRVCKFGAISKPSDVSD 60



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          + I  ++C  C +C   CPV AI+
Sbjct: 1  MVIVNEKCKGCTICSKNCPVGAIE 24


>gi|198243613|ref|YP_002216814.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938129|gb|ACH75462.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 181

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|150399419|ref|YP_001323186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012122|gb|ABR54574.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 132

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    CV  CPV     + +  + +  DECI C  C   CPV+AIK
Sbjct: 82  CIDCG--SCVVHCPVGALSVDSDYKILLDEDECIGCKNCAKVCPVNAIK 128



 Score = 36.3 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 26  FYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTE 60
           + E E+   I     + CIDCG C   CPV A+  D++
Sbjct: 65  YGEAEDIPKIIQKDDNLCIDCGSCVVHCPVGALSVDSD 102


>gi|159899734|ref|YP_001545981.1| NADH-quinone oxidoreductase subunit I [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892773|gb|ABX05853.1| NADH-quinone oxidoreductase, chain I [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 168

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP D  Y              GE       I+   CI CG CE  C
Sbjct: 53  ERCIGC--SLCAAACPADAIYVVPGQNDPANPRSAGERHAAVYEINMLRCIFCGYCEDAC 110

Query: 51  PVDAIKPDTEPGLELW 66
           P +AI  + +  L  +
Sbjct: 111 PTNAIVLEHQYELAFY 126


>gi|116051507|ref|YP_789657.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108854|ref|ZP_07794838.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
 gi|122260647|sp|Q02QX9|RNFB_PSEAB RecName: Full=Electron transport complex protein rnfB
 gi|115586728|gb|ABJ12743.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310881340|gb|EFQ39934.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
          Length = 188

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+  +T
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMRET 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           P+D   E       I   ECI C  C   CPVDAI
Sbjct: 94  PLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|313679324|ref|YP_004057063.1| phenylacetyl-CoA:acceptor oxidoreductase padc subunit
           [Oceanithermus profundus DSM 14977]
 gi|313152039|gb|ADR35890.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Oceanithermus profundus DSM 14977]
          Length = 298

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    CV VCPV   ++ ++ +  I  D CI C  C   CP  A
Sbjct: 130 PCMQCDKPPCVPVCPVGATWKRKDGIVEIDYDACIGCRYCITACPYSA 177


>gi|300906565|ref|ZP_07124256.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           84-1]
 gi|301303043|ref|ZP_07209170.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           124-1]
 gi|300401604|gb|EFJ85142.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           84-1]
 gi|300841707|gb|EFK69467.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           124-1]
 gi|315256768|gb|EFU36736.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           85-1]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|256024604|ref|ZP_05438469.1| putative oxidoreductase Fe-S binding subunit [Escherichia sp.
           4_1_40B]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|218887556|ref|YP_002436877.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758510|gb|ACL09409.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 188

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIK 56
            C  C++  C+E CPV  + + E+ + +H  D CI CG C   CP  A K
Sbjct: 58  ACNHCENPVCLEQCPVKAYTKREDGIVVHDQDACIGCGNCVRSCPYGAPK 107


>gi|206890889|ref|YP_002248948.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742827|gb|ACI21884.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 187

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGEN---FLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C  T C +VCP  C Y         G        I    CI CG CE  CPV+AI
Sbjct: 59  ERCVAC--TKCAQVCPSQCIYIDYSINPETGARVLTKYEIDALRCIFCGYCEEVCPVNAI 116



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 22 PVDCFYEGENFLAIHPDE----CIDCGVCEPECPVDAIKPD 58
          P++  + G +     P+     C+ C  C   CP   I  D
Sbjct: 39 PLEDGFRGRHAFVRDPETGKERCVACTKCAQVCPSQCIYID 79


>gi|163744893|ref|ZP_02152253.1| 4Fe-4S binding domain protein [Oceanibulbus indolifex HEL-45]
 gi|161381711|gb|EDQ06120.1| 4Fe-4S binding domain protein [Oceanibulbus indolifex HEL-45]
          Length = 254

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCDDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGAREMDVAAG 137


>gi|218927545|ref|YP_002345420.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis CO92]
 gi|115346156|emb|CAL19024.1| putative oxidoreductase [Yersinia pestis CO92]
          Length = 671

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNRVQVIQEKCIGCKTCMIACPFG 100


>gi|127511178|ref|YP_001092375.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636473|gb|ABO22116.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 231

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V   C  C +  C +VCPV+  Y+ +    + I  +ECI C +C   CP  A + D    
Sbjct: 84  VPNQCNQCDNPVCTQVCPVEATYKRKEDGIVVIDHEECIHCQLCVDACPYGARRKDESLD 143


>gi|22124513|ref|NP_667936.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis KIM
           10]
 gi|45440350|ref|NP_991889.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108809930|ref|YP_653846.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           Antiqua]
 gi|108813488|ref|YP_649255.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           Nepal516]
 gi|145600878|ref|YP_001164954.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis
           Pestoides F]
 gi|150260614|ref|ZP_01917342.1| putative oxidoreductase [Yersinia pestis CA88-4125]
 gi|165926688|ref|ZP_02222520.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936436|ref|ZP_02225004.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011879|ref|ZP_02232777.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213982|ref|ZP_02240017.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167419006|ref|ZP_02310759.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423469|ref|ZP_02315222.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469245|ref|ZP_02333949.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis FV-1]
 gi|229836600|ref|ZP_04456766.1| putative oxidoreductase [Yersinia pestis Pestoides A]
 gi|229840209|ref|ZP_04460368.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842290|ref|ZP_04462445.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229903972|ref|ZP_04519085.1| putative oxidoreductase [Yersinia pestis Nepal516]
 gi|270489042|ref|ZP_06206116.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis KIM
           D27]
 gi|294502454|ref|YP_003566516.1| oxidoreductase, Fe-S subunit [Yersinia pestis Z176003]
 gi|21957308|gb|AAM84187.1|AE013662_1 putative oxidoreductase, Fe-S subunit [Yersinia pestis KIM 10]
 gi|45435206|gb|AAS60766.1| putative oxidoreductase, Fe-S subunit [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777136|gb|ABG19655.1| oxidoreductase [Yersinia pestis Nepal516]
 gi|108781843|gb|ABG15901.1| putative oxidoreductase [Yersinia pestis Antiqua]
 gi|145212574|gb|ABP41981.1| oxidoreductase [Yersinia pestis Pestoides F]
 gi|149290022|gb|EDM40099.1| putative oxidoreductase [Yersinia pestis CA88-4125]
 gi|165915552|gb|EDR34161.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921311|gb|EDR38535.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989238|gb|EDR41539.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204777|gb|EDR49257.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963000|gb|EDR59021.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167057639|gb|EDR67385.1| putative anaerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679742|gb|EEO75845.1| putative oxidoreductase [Yersinia pestis Nepal516]
 gi|229690600|gb|EEO82654.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696575|gb|EEO86622.1| putative oxidoreductase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706284|gb|EEO92292.1| putative oxidoreductase [Yersinia pestis Pestoides A]
 gi|262360485|gb|ACY57206.1| oxidoreductase, Fe-S subunit [Yersinia pestis D106004]
 gi|262364431|gb|ACY60988.1| oxidoreductase, Fe-S subunit [Yersinia pestis D182038]
 gi|270337546|gb|EFA48323.1| putative oxidoreductase Fe-S binding subunit [Yersinia pestis KIM
           D27]
 gi|294352913|gb|ADE63254.1| oxidoreductase, Fe-S subunit [Yersinia pestis Z176003]
 gi|320013793|gb|ADV97364.1| putative oxidoreductase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 671

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP     E  N + +  ++CI C  C   CP  
Sbjct: 56  CHHCEDAPCASTCPNGAIVELNNRVQVIQEKCIGCKTCMIACPFG 100


>gi|296137471|ref|YP_003644713.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797593|gb|ADG32383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 311

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   C+EVCP    ++ ++ +  I  D C  CG C   CP DA
Sbjct: 149 CNHCERPSCIEVCPAGATWQRKDGIVEIDYDLCWGCGACVNACPYDA 195


>gi|242277849|ref|YP_002989978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120743|gb|ACS78439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           T+     C+ C +  CV+ CP    F +  +    I    CI CG C P CP DA
Sbjct: 55  THFQPGGCMHCDNPTCVQACPTGATFKDKTDGTVRIDTSLCIGCGNCMPACPYDA 109


>gi|237798781|ref|ZP_04587242.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021634|gb|EGI01691.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 291

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++    CI C  T C++ CPVD            I  +EC  C +C   CPVD I+   
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVII-EECTGCDLCVAPCPVDCIEMHP 140

Query: 60  EPGL 63
            P  
Sbjct: 141 LPSA 144



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ E C  C    CV  CPVDC   
Sbjct: 113 MHTVIIEECTGCDL--CVAPCPVDCIEM 138


>gi|288573057|ref|ZP_06391414.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568798|gb|EFC90355.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 617

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 22/49 (44%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK+      CP   F E      I    C++CGVC   CP  AI
Sbjct: 563 EVCIGCKYCITSFNCPGLVFDESSKKAYIDERYCVNCGVCMSVCPHGAI 611


>gi|198275773|ref|ZP_03208304.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
 gi|198271402|gb|EDY95672.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
          Length = 321

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+VCP +      N   I P +C  C  CE ECP  AI
Sbjct: 221 CIGCG--KCVKVCPFEAITLENNLAYIDPAKCKSCRKCEMECPQQAI 265



 Score = 41.7 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVSACQFDAIHMNPETGLPEVDESKCTACGACSKACPRNIIE 189


>gi|253700753|ref|YP_003021942.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251775603|gb|ACT18184.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 436

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
            V+   CI C    C  VCP++     E     I  ++CI C  C   CP  A++    
Sbjct: 14 ARVIAGKCIACGAR-CQSVCPINGVEMSEQGEPLIETEKCIGCVKCVKACPAGALEMFYT 72

Query: 61 PGL 63
          P  
Sbjct: 73 PEE 75


>gi|163814423|ref|ZP_02205812.1| hypothetical protein COPEUT_00574 [Coprococcus eutactus ATCC
          27759]
 gi|158450058|gb|EDP27053.1| hypothetical protein COPEUT_00574 [Coprococcus eutactus ATCC
          27759]
          Length = 401

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPVD-AIKPDTE 60
          ++C  C  T C  +CP D     E+   FL   +  + CI+CG CE  CP+   I+    
Sbjct: 8  QDCCGC--TACAAICPKDAIIMKEDNEGFLYPTVDKETCINCGACEKVCPIKYPIRQQKR 65

Query: 61 PGLELWLKINSE 72
               +++  +E
Sbjct: 66 KDDIYYIQCKNE 77


>gi|149176111|ref|ZP_01854727.1| molybdopterin oxidoreductase, iron sulfur subunit [Planctomyces
           maris DSM 8797]
 gi|148844978|gb|EDL59325.1| molybdopterin oxidoreductase, iron sulfur subunit [Planctomyces
           maris DSM 8797]
          Length = 581

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C    C++ CPV+ + +     +  H  D+C  C  C   CP D  K  ++ G
Sbjct: 133 VTTACHHCLDPGCMQACPVNAYEKDPITGIVRHLDDQCFGCQYCTLACPYDVPKYHSKKG 192


>gi|91201122|emb|CAJ74181.1| conserved hypothetical iron sulfur protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 357

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C + CPV     GE +  I P  CI CG C   C   A+K
Sbjct: 196 CTTCGV--CGKWCPVGAIKIGEEYAIIDPQICIGCGECLAVCQFQAVK 241


>gi|118359716|ref|XP_001013096.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila]
 gi|89294863|gb|EAR92851.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila SB210]
          Length = 324

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 222 ERCIACKL--CQSACPARAITIETEPRPDGSRRTVRYDIDMTKCIYCGFCQEACPVDAIV 279

Query: 57  PDTEPGLELWL 67
                    +L
Sbjct: 280 EGPNYEQTAYL 290


>gi|21229366|ref|NP_635288.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|20907953|gb|AAM32960.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1]
          Length = 296

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ ENC+ CK   C + C +      E+  +I  ++CI CG C   C  DA++ +
Sbjct: 166 VLEENCVGCK--RCEKACKMGAIKVIEDKASIDTEKCILCGACIAACRKDALRAE 218


>gi|113968979|ref|YP_732772.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113883663|gb|ABI37715.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 251

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C++  C+ +CP    ++  + + + + + C+ CG C   CP DA
Sbjct: 98  CNHCENPPCIPICPTGATFQRPDGIVVVNNEWCVGCGYCVQACPYDA 144


>gi|315614959|gb|EFU95597.1| uncharacterized protein ygfT [Escherichia coli 3431]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|319795038|ref|YP_004156678.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315597501|gb|ADU38567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 276

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP  A + D E
Sbjct: 136 SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCAWACPYGARELDEE 190


>gi|300921217|ref|ZP_07137590.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           115-1]
 gi|300411823|gb|EFJ95133.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           115-1]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|289191767|ref|YP_003457708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
 gi|288938217|gb|ADC68972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus sp. FS406-22]
          Length = 163

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
          + CI C    C+E+CPVD     ++ L   I  ++C+ CG C+  CP +AI
Sbjct: 37 DKCISCG--KCIEICPVDAITYSKDGLFIVIDKEKCVFCGRCKKVCPTNAI 85



 Score = 44.8 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E C  C    C+  CP +   E  + + I  ++C  CG CE  CP++AI
Sbjct: 112 ISERCASCLV--CLRNCPFNAIEEYGSKIRIDINKCELCGRCEELCPLNAI 160


>gi|198283943|ref|YP_002220264.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667094|ref|YP_002426577.1| sulfur reductase, iron-sulfur binding subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248464|gb|ACH84057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519307|gb|ACK79893.1| sulfur reductase, iron-sulfur binding subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 207

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV VCP    + E    + ++PD C+ C  C   CP DA  P     ++ 
Sbjct: 61  CNHCDNPPCVSVCPTGATWKEANGIVRVNPDICMGCQACAMACPYDARYPADSNDIDK 118


>gi|297619218|ref|YP_003707323.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
 gi|297378195|gb|ADI36350.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
          Length = 318

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  CK   C E C  D    + +  + I    C  CG+CE  CPVDAI  + E
Sbjct: 69  DLCTNCKL--CYEKCRFDAILLDKDENVVIDDLSCEGCGLCEYICPVDAITMEDE 121


>gi|152971571|ref|YP_001336680.1| electron transport protein HydN [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896169|ref|YP_002920905.1| electron transport protein HydN [Klebsiella pneumoniae NTUH-K2044]
 gi|150956420|gb|ABR78450.1| electron transport protein (formate to hydrogen), Fe-S center
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548487|dbj|BAH64838.1| electron transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 175

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
              C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P +  
Sbjct: 55  ATACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRH 114


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
           Y +++ C+ C    C+  CPV+C   GE  +   I    CI CGVC   C   A++
Sbjct: 560 YEISDRCVGCGL--CLHRCPVNCIS-GERKMRHRIDQSRCIKCGVCFQTCKFHAVE 612



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D C+ CG+C   CPV+ I  +
Sbjct: 564 DRCVGCGLCLHRCPVNCISGE 584


>gi|121702465|ref|XP_001269497.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119397640|gb|EAW08071.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 228

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 127 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 184

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
             +          N+EYAT+     +  K++ L +  K +
Sbjct: 185 ETS----------NAEYATETREELLYNKEKLLANGDKWE 214


>gi|191166003|ref|ZP_03027839.1| protein aegA [Escherichia coli B7A]
 gi|309793957|ref|ZP_07688382.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           145-7]
 gi|332280429|ref|ZP_08392842.1| conserved hypothetical protein [Shigella sp. D9]
 gi|190903951|gb|EDV63664.1| protein aegA [Escherichia coli B7A]
 gi|308122364|gb|EFO59626.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           145-7]
 gi|332102781|gb|EGJ06127.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 644

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|71900626|ref|ZP_00682752.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|71729620|gb|EAO31725.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
          Length = 139

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            +++  +CI C  T C++ CPVD    G   +  +    C  C +C P CPV+ I+
Sbjct: 82  AWIIEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVECIE 135


>gi|237706667|ref|ZP_04537148.1| electron transporter hydN [Escherichia sp. 3_2_53FAA]
 gi|226899707|gb|EEH85966.1| electron transporter hydN [Escherichia sp. 3_2_53FAA]
          Length = 182

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 65  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 117


>gi|196232899|ref|ZP_03131749.1| molybdopterin oxidoreductase [Chthoniobacter flavus Ellin428]
 gi|196223098|gb|EDY17618.1| molybdopterin oxidoreductase [Chthoniobacter flavus Ellin428]
          Length = 1259

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
            VT  C  C    C+E CPV  +  + E  +  H  D+CI C  C  +CP D  +     
Sbjct: 111 TVTTACHHCVEPACLEGCPVMAYDKDAETGIVRHLDDQCIGCQYCILKCPYDVPQYSERL 170

Query: 62  G 62
           G
Sbjct: 171 G 171


>gi|11498837|ref|NP_070066.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
 gi|2649346|gb|AAB90008.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
          Length = 769

 Score = 55.2 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV  E CI C    C +VC  +     +    I+P+ C  CG+C   CP DAI
Sbjct: 569 AYVDEEKCIGC--RICEKVCEFNAVTV-DRKAKINPNACAMCGICVAACPADAI 619



 Score = 40.9 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 19/78 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV    C  C   DC  VCPV+   E                     + AI  + CI C 
Sbjct: 237 YVDESKCKGCID-DCSSVCPVEIPNEFDYGIGVRKAIYIPIPQSTPLYAAIDWEHCIGCR 295

Query: 45  VCEPECPVDAIKPDTEPG 62
           +CE  C   A+    +P 
Sbjct: 296 LCEKACQPKAVDFSQQPE 313


>gi|303328508|ref|ZP_07358945.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861502|gb|EFL84439.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 303

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V + C+ C    C ++C        +    I P +C  CGVC   CP  AI
Sbjct: 63  IVQDLCVQCG--RCADLCRFGAVRNEDGHFVIDPLDCEGCGVCRALCPARAI 112


>gi|296104400|ref|YP_003614546.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295058859|gb|ADF63597.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 202

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAGVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|255283527|ref|ZP_05348082.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265984|gb|EET59189.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 372

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T+ CI C    C  +C        +   +I  ++C+ CG C   CP DA++  ++   
Sbjct: 192 VNTDACIGCG--ACSRICAHGAAVVTDKKASIDHNKCVGCGRCIGVCPKDAVEAASDEAN 249

Query: 64  ELWLKIN---SEYAT 75
           ++   +N   +EY+ 
Sbjct: 250 DI---LNCKIAEYSK 261


>gi|149925754|ref|ZP_01914018.1| probable ferredoxin protein [Limnobacter sp. MED105]
 gi|149825871|gb|EDM85079.1| probable ferredoxin protein [Limnobacter sp. MED105]
          Length = 103

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P +C +C        C   CPV+ 
Sbjct: 1  MALIITDECINCDV--CEPECPNGAISMGEEIYEIDPGKCTECVGHFDEPQCVVVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNIT 81
          I P      +   ++  ++    P+ T
Sbjct: 59 I-PKDPAHPDTRQQLLGKFFKLHPDKT 84


>gi|193070557|ref|ZP_03051496.1| protein aegA [Escherichia coli E110019]
 gi|192956140|gb|EDV86604.1| protein aegA [Escherichia coli E110019]
          Length = 644

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|163845623|ref|YP_001633667.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222523325|ref|YP_002567795.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163666912|gb|ABY33278.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447204|gb|ACM51470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           sp. Y-400-fl]
          Length = 318

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            +   C+ C +  C  VCPV   +  E+ +  +  ++CI C  C   CP  A
Sbjct: 149 FIPRPCMQCDNPPCTGVCPVSATFTNEHGVVEVDYEQCIGCRACIAACPYGA 200


>gi|313112714|ref|ZP_07798363.1| ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624970|gb|EFQ08276.1| ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 55

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV      +   +++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCG--ACEGACPVGAITV-DGVASVNADACIDCGACEGACPTGAITAE 55


>gi|300087162|ref|YP_003757684.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526895|gb|ADJ25363.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 265

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEPGL 63
           V++ C+ C    CV VCPV   ++  N   +  + +CI C  C+  CP D  K + +   
Sbjct: 66  VSKRCLHCFSPACVSVCPVGALHKEANGAVVWEEGKCIGCRYCQNACPFDIPKFEWDEPW 125


>gi|86159053|ref|YP_465838.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775564|gb|ABC82401.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 491

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C+ C+   C   CP        N +  +    CI CG C   CP  A
Sbjct: 60  CMQCEAHPCTVDCPTGATSVDANGVVGVDAGVCIGCGNCVAACPYGA 106


>gi|219669176|ref|YP_002459611.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219539436|gb|ACL21175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 194

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDA 54
           +C  C    C  VCPV      ++ + +H +  CI C VC   CP  A
Sbjct: 56  SCRHCSEPQCAAVCPVGAIKSTDDGVVLHNELLCIGCQVCAAVCPYAA 103



 Score = 34.0 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDE--------------CIDCG 44
          M  ++ + +CI CK   C+  C  +     +N +L +HP E              C  C 
Sbjct: 4  MAMLIDSTSCIGCK--ACLAACKQENGLATDNNYLKMHPVEFLNDHYVRYYAHVSCRHCS 61

Query: 45 --VCEPECPVDAIKPDTE 60
             C   CPV AIK   +
Sbjct: 62 EPQCAAVCPVGAIKSTDD 79


>gi|324005537|gb|EGB74756.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           57-2]
          Length = 644

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|304412801|ref|ZP_07394403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307465|ref|ZP_07587200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304348881|gb|EFM13297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910253|gb|EFN40686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 553

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYLNKVVSRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|302392276|ref|YP_003828096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204353|gb|ADL13031.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 369

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP----DTEPGLE 64
           CI C   +C + CP D F E +    +  ++CI CG C   CP DAI P    D+   ++
Sbjct: 195 CITCG--ECSDWCPEDAF-EIDEVSRLDEEKCIGCGECIVTCPTDAITPRFVDDSADDIQ 251

Query: 65  LWLK 68
             + 
Sbjct: 252 ERIA 255


>gi|300087166|ref|YP_003757688.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526899|gb|ADJ25367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 275

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIK---PD 58
           + V++ C+ C H  CV VCPV    + EN   +  + +CI C  C+  CP D  K    +
Sbjct: 68  HFVSKRCMHCIHPACVSVCPVGALQKLENGRVVWEEGKCIGCRYCQNACPFDIPKFSWYN 127

Query: 59  TEPGLELWLKI 69
            E   + W KI
Sbjct: 128 EEGETDPWPKI 138


>gi|254037752|ref|ZP_04871810.1| electron transporter hydN [Escherichia sp. 1_1_43]
 gi|332280633|ref|ZP_08393046.1| electron transporter hydN [Shigella sp. D9]
 gi|226839376|gb|EEH71397.1| electron transporter hydN [Escherichia sp. 1_1_43]
 gi|332102985|gb|EGJ06331.1| electron transporter hydN [Shigella sp. D9]
          Length = 182

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 65  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 117


>gi|170741268|ref|YP_001769923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195542|gb|ACA17489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 670

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C++VCP        + +A+ P  C  CG C   CP  A      P  
Sbjct: 286 CLDVCPTGAIAPAGDHVAVDPFVCAGCGSCASVCPTGAAAATLPPAD 332



 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           TE C LC    CV  CP     +  +   L+     C+ CG+C   CP D I  +     
Sbjct: 521 TEACTLC--HACVGACPTGALSDDPDRPLLSFSESLCVQCGLCAATCPEDVITLEPRLDF 578

Query: 64  ELWLK 68
             W  
Sbjct: 579 AAWAA 583


>gi|254247589|ref|ZP_04940910.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
 gi|124872365|gb|EAY64081.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
          Length = 342

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 117 AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAMLPV 174

Query: 59  --TEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 175 TGDRTGWDAWSQEQADAARE 194


>gi|20093897|ref|NP_613744.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886838|gb|AAM01674.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 252

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD---TEPGL 63
           + CI C    C ++CPV+      + L I  D+CI C  CE  CPVDAI  +   T P  
Sbjct: 133 DRCIAC--RLCEQICPVEAPNI--DKLRIDEDKCIGCKACEHACPVDAIVIERTLTPPEF 188

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
           E  ++++ +                 A +M+G
Sbjct: 189 EREIELDQDMCIGCEVCVEVCPV--DAVEMEG 218



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C+   CVEVCPVD      +   I  D CI CG C   CP  AIK
Sbjct: 197 DMCIGCEV--CVEVCPVDAVEMEGDVANISYDRCIRCGECARNCPTGAIK 244



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ CK   C E CPVD   E +  N   +  D C+ C +C   CPVDAIK
Sbjct: 47 ERCVGCK--TCYEECPVDALTEPDSTNPPEVDHDACVRCRLCAKSCPVDAIK 96



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           F+ I P+ C+ C  C  ECPVDA+    
Sbjct: 40 EFVTIDPERCVGCKTCYEECPVDALTEPD 68


>gi|26249299|ref|NP_755339.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           CFT073]
 gi|91212264|ref|YP_542250.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UTI89]
 gi|117625118|ref|YP_854106.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli APEC
           O1]
 gi|227888434|ref|ZP_04006239.1| oxidoreductase Fe-S binding subunit [Escherichia coli 83972]
 gi|237706471|ref|ZP_04536952.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300980321|ref|ZP_07174975.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           45-1]
 gi|301049331|ref|ZP_07196301.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           185-1]
 gi|306812212|ref|ZP_07446410.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
 gi|26109706|gb|AAN81909.1|AE016765_311 Hypothetical protein ygfT [Escherichia coli CFT073]
 gi|91073838|gb|ABE08719.1| hypothetical protein YgfT [Escherichia coli UTI89]
 gi|115514242|gb|ABJ02317.1| putative NADPH-dependent glutamate synthase beta chain [Escherichia
           coli APEC O1]
 gi|226899511|gb|EEH85770.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227834703|gb|EEJ45169.1| oxidoreductase Fe-S binding subunit [Escherichia coli 83972]
 gi|300298930|gb|EFJ55315.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           185-1]
 gi|300409329|gb|EFJ92867.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           45-1]
 gi|305854250|gb|EFM54688.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
 gi|307625541|gb|ADN69845.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UM146]
 gi|315289452|gb|EFU48847.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           110-3]
 gi|315293882|gb|EFU53234.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           153-1]
 gi|323951675|gb|EGB47550.1| glutamate synthase [Escherichia coli H252]
          Length = 644

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|126176318|ref|YP_001052467.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999523|gb|ABN63598.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 553

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYLNKVVSRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|53728930|ref|ZP_00134519.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209139|ref|YP_001054364.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae L20]
 gi|126097931|gb|ABN74759.1| anaerobic dimethyl sulfoxide reductase chain B [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 205

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C    CV+VCP    ++  +    ++   CI C  C   CP DA + 
Sbjct: 60  AYYMSISCNHCDDPVCVKVCPTGAMHKNADGFVMVNEYTCIGCRYCSMACPYDAPQY 116


>gi|322614338|gb|EFY11269.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621597|gb|EFY18450.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624458|gb|EFY21291.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628789|gb|EFY25572.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633484|gb|EFY30226.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635940|gb|EFY32648.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639648|gb|EFY36333.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646831|gb|EFY43334.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650599|gb|EFY47004.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654789|gb|EFY51108.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659009|gb|EFY55262.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664424|gb|EFY60618.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668327|gb|EFY64484.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673693|gb|EFY69794.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677754|gb|EFY73817.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681416|gb|EFY77448.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683818|gb|EFY79828.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193793|gb|EFZ78996.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200263|gb|EFZ85345.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203234|gb|EFZ88263.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205519|gb|EFZ90484.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212807|gb|EFZ97618.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216333|gb|EGA01060.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221081|gb|EGA05512.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226902|gb|EGA11084.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230814|gb|EGA14932.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234835|gb|EGA18921.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238874|gb|EGA22924.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241574|gb|EGA25605.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248279|gb|EGA32215.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251137|gb|EGA35010.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256020|gb|EGA39758.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263155|gb|EGA46693.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264340|gb|EGA47846.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271167|gb|EGA54595.1| formate dehydrogenase-H ferredoxin subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 181

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|320195004|gb|EFW69633.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           WV_060327]
          Length = 644

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|309786205|ref|ZP_07680833.1| aegA domain protein [Shigella dysenteriae 1617]
 gi|308925950|gb|EFP71429.1| aegA domain protein [Shigella dysenteriae 1617]
          Length = 134

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 17 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 69


>gi|301027817|ref|ZP_07191122.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           196-1]
 gi|299879079|gb|EFI87290.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           196-1]
          Length = 644

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|289823871|ref|ZP_06543477.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-3139]
          Length = 181

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|290511033|ref|ZP_06550402.1| formate hydrogenlyase subunit 2 hycB [Klebsiella sp. 1_1_55]
 gi|289776026|gb|EFD84025.1| formate hydrogenlyase subunit 2 hycB [Klebsiella sp. 1_1_55]
          Length = 202

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QMCHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|213426145|ref|ZP_03358895.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E02-1180]
 gi|289810469|ref|ZP_06541098.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 161

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 8  QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 58


>gi|205353787|ref|YP_002227588.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273568|emb|CAR38555.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628895|gb|EGE35238.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 181

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|16761620|ref|NP_457237.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766149|ref|NP_461764.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143104|ref|NP_806446.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414795|ref|YP_151870.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181346|ref|YP_217763.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161502111|ref|YP_001569223.1| electron transport protein HydN [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|167550318|ref|ZP_02344075.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167994146|ref|ZP_02575238.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230903|ref|ZP_02655961.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168242572|ref|ZP_02667504.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168262044|ref|ZP_02684017.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168464032|ref|ZP_02697949.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168820470|ref|ZP_02832470.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194443395|ref|YP_002042084.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449046|ref|YP_002046803.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472394|ref|ZP_03078378.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197250119|ref|YP_002147740.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262354|ref|ZP_03162428.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363723|ref|YP_002143360.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200386541|ref|ZP_03213153.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928162|ref|ZP_03219362.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|207858107|ref|YP_002244758.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213027481|ref|ZP_03341928.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213052203|ref|ZP_03345081.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426136|ref|ZP_03358886.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213613006|ref|ZP_03370832.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213648112|ref|ZP_03378165.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852356|ref|ZP_03381888.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238909610|ref|ZP_04653447.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823882|ref|ZP_06543488.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25285319|pir||AG0845 electron transport protein hydN [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16421389|gb|AAL21723.1| electron transport protein (FeS center) from formate to hydrogen
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16503921|emb|CAD05950.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138737|gb|AAO70306.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129052|gb|AAV78558.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128979|gb|AAX66682.1| electron transport protein (FeS senter) from formate to hydrogen
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160863458|gb|ABX20081.1| hypothetical protein SARI_00128 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194402058|gb|ACF62280.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194407350|gb|ACF67569.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458758|gb|EDX47597.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195633632|gb|EDX52046.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095200|emb|CAR60751.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213822|gb|ACH51219.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197240609|gb|EDY23229.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199603639|gb|EDZ02184.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322484|gb|EDZ07681.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205324768|gb|EDZ12607.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205327919|gb|EDZ14683.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334616|gb|EDZ21380.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205338064|gb|EDZ24828.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205342881|gb|EDZ29645.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349297|gb|EDZ35928.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206709910|emb|CAR34263.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247979|emb|CBG25812.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994965|gb|ACY89850.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159403|emb|CBW18921.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913861|dbj|BAJ37835.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087246|emb|CBY97011.1| Frd operon probable iron-sulfur subunit A Flags: Fragment
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223395|gb|EFX48461.1| Electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322715829|gb|EFZ07400.1| electron transport protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|332989715|gb|AEF08698.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 181

 Score = 54.8 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|331654383|ref|ZP_08355383.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
 gi|331047765|gb|EGI19842.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|293412245|ref|ZP_06654968.1| oxidoreductase Fe-S binding subunit [Escherichia coli B354]
 gi|291469016|gb|EFF11507.1| oxidoreductase Fe-S binding subunit [Escherichia coli B354]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|219851137|ref|YP_002465569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanosphaerula palustris E1-9c]
 gi|219545396|gb|ACL15846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanosphaerula palustris E1-9c]
          Length = 57

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V ++ C+ C+   CV+ CP +          I  D+C+DCG C   CP  AI  D
Sbjct: 5  VDSDLCVGCE--TCVDECPAEAIAMANGIAVIDKDKCVDCGSCVEVCPSSAITMD 57


>gi|212711148|ref|ZP_03319276.1| hypothetical protein PROVALCAL_02220 [Providencia alcalifaciens DSM
           30120]
 gi|212686316|gb|EEB45844.1| hypothetical protein PROVALCAL_02220 [Providencia alcalifaciens DSM
           30120]
          Length = 354

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDPDICTGCRYCMVGCPFN 157


>gi|254445223|ref|ZP_05058699.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259531|gb|EDY83839.1| 4Fe-4S binding domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 527

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            VT  C  C    C+  CPVD +  +  + + +H  D+CI C  C  +CP D  K 
Sbjct: 109 TVTSACHHCVEPACMIGCPVDAYEKDAVSGIVLHLDDQCIGCQYCVLKCPYDVPKF 164


>gi|188493744|ref|ZP_03001014.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|188488943|gb|EDU64046.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +YV+  E C+ C  T C  VCP  C       +  I    C+ CG C   C   AI   T
Sbjct: 541 SYVIDPEKCVGC--TACARVCPASCISGEVRKVHEIDQSACVKCGSCIEVCRFGAISKVT 598

Query: 60  EP 61
             
Sbjct: 599 PA 600



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I P++C+ C  C   CP   I  +     E
Sbjct: 542 YVIDPEKCVGCTACARVCPASCISGEVRKVHE 573


>gi|94263233|ref|ZP_01287050.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93456451|gb|EAT06571.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 291

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCPV+   +     + +  D+CI C  C   CP    + D + 
Sbjct: 100 CQHCRKPACARVCPVNAISKLPEGPVVVVEDKCIGCRYCYQACPFSVPELDFDE 153


>gi|90409769|ref|ZP_01217786.1| tetrathionate reductase, subunit B [Photobacterium profundum 3TCK]
 gi|90329122|gb|EAS45379.1| tetrathionate reductase, subunit B [Photobacterium profundum 3TCK]
          Length = 262

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  CV+VCPV   Y+ E+ +  +    C+ C  C   CP DA   + E
Sbjct: 117 CNHCDNPPCVKVCPVQATYQREDGIVMVDNKRCVACAYCVQACPYDARFINDE 169


>gi|238791881|ref|ZP_04635518.1| Tetrathionate reductase subunit B [Yersinia intermedia ATCC 29909]
 gi|238728985|gb|EEQ20502.1| Tetrathionate reductase subunit B [Yersinia intermedia ATCC 29909]
          Length = 244

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ ++ + +     C+ C  C   CP +A
Sbjct: 100 CNHCDNPPCVPVCPVQATYQRQDGIVVVDNTRCVGCAYCVQACPYEA 146


>gi|291287575|ref|YP_003504391.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884735|gb|ADD68435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 778

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 6   TENCILCKHTD----CVEVCPVDCFYEGEN----FLAI-HPDECIDCGVCEPECP 51
           T  C+ C        C+EVCP       EN    F  + +P +CI CG+C   CP
Sbjct: 708 TTRCMSCGFCRDCSFCLEVCPEQAITRTENPDGTFEYLSNPSKCIGCGICAGVCP 762


>gi|204930526|ref|ZP_03221456.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204320460|gb|EDZ05663.1| molybdopterin-containing oxidoreductase iron-sulfur subunit
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 185

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C+H  CV  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCEHPACVAACPVEAYTKCEDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|161615745|ref|YP_001589710.1| electron transport protein HydN [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161365109|gb|ABX68877.1| hypothetical protein SPAB_03536 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 162

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 39 CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 91


>gi|119898238|ref|YP_933451.1| phenylacetyl-CoA:acceptor oxidoreductase [Azoarcus sp. BH72]
 gi|119670651|emb|CAL94564.1| conserved hypothetical phenylacetyl-CoA:acceptor oxidoreductase
           [Azoarcus sp. BH72]
          Length = 215

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C+EVCP     + ++ +  I  D CI C  C   CP  A
Sbjct: 58  CQHCSDPPCMEVCPSTATGQRKDGIVTIDYDICIGCSYCAVACPYQA 104


>gi|115389268|ref|XP_001212139.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114194535|gb|EAU36235.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 226

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 182

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
             +          N+EYAT+     +  K++ L +  K +
Sbjct: 183 ETS----------NAEYATETREELLYNKEKLLANGDKWE 212


>gi|148653489|ref|YP_001280582.1| NADH dehydrogenase subunit I [Psychrobacter sp. PRwf-1]
 gi|148572573|gb|ABQ94632.1| NADH-quinone oxidoreductase, chain I [Psychrobacter sp. PRwf-1]
          Length = 182

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVACISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  +++ N  Y  +   I+   +   
Sbjct: 118 LTPDFELGEYVRQNLVYEKEHLLISGPGKYPD 149


>gi|193063468|ref|ZP_03044557.1| protein aegA [Escherichia coli E22]
 gi|293449209|ref|ZP_06663630.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|300815663|ref|ZP_07095887.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           107-1]
 gi|192930745|gb|EDV83350.1| protein aegA [Escherichia coli E22]
 gi|291322299|gb|EFE61728.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|300531592|gb|EFK52654.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           107-1]
 gi|320202545|gb|EFW77115.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           EC4100B]
 gi|323154766|gb|EFZ40964.1| hypothetical protein ECEPECA14_3375 [Escherichia coli EPECa14]
 gi|323162524|gb|EFZ48374.1| hypothetical protein ECE128010_1289 [Escherichia coli E128010]
 gi|323180329|gb|EFZ65881.1| hypothetical protein ECOK1180_1011 [Escherichia coli 1180]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|329119761|ref|ZP_08248439.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464124|gb|EGF10431.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 281

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            CI C  T C+  CPVD        +  +   EC  CG+C   CPVD I 
Sbjct: 83  ACIGC--TACIRACPVDAIMGASKLMHTVIAAECTGCGLCVAPCPVDCIH 130



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 79 IDEAACIGCTACIRACPVDAI 99



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC 40
           M  V+   C  C    CV  CPVDC +   +  ++ P  C
Sbjct: 106 MHTVIAAECTGCGL--CVAPCPVDCIHMRPSENSVLPQAC 143


>gi|324017282|gb|EGB86501.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           117-3]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|323957393|gb|EGB53115.1| glutamate synthase [Escherichia coli H263]
          Length = 641

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 113


>gi|323941593|gb|EGB37773.1| glutamate synthase [Escherichia coli E482]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|312964855|ref|ZP_07779095.1| uncharacterized protein ygfT [Escherichia coli 2362-75]
 gi|312290411|gb|EFR18291.1| uncharacterized protein ygfT [Escherichia coli 2362-75]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|256019316|ref|ZP_05433181.1| putative oxidoreductase Fe-S binding subunit [Shigella sp. D9]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|237729679|ref|ZP_04560160.1| formate hydrogenlyase subunit 2 [Citrobacter sp. 30_2]
 gi|226908285|gb|EEH94203.1| formate hydrogenlyase subunit 2 [Citrobacter sp. 30_2]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHQCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|221635464|ref|YP_002523340.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermomicrobium roseum DSM 5159]
 gi|221157489|gb|ACM06607.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Thermomicrobium roseum DSM 5159]
          Length = 271

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C    C+E CP       E + + I  D C  C  C   CP   I+ + E
Sbjct: 78  SDVCKHCVRAACLEACPTGAIIRTEFDTVVIQQDVCNGCRACISACPFGVIEINPE 133


>gi|315230917|ref|YP_004071353.1| 4Fe-4S cluster-binding protein [Thermococcus barophilus MP]
 gi|315183945|gb|ADT84130.1| 4Fe-4S cluster-binding protein [Thermococcus barophilus MP]
          Length = 211

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           V   C  C+   C++VCP     + E    I + ++CI C +C   CP    K + E
Sbjct: 64  VPLRCQHCEDAPCMKVCPTGAIKKSEEGFVILNTNKCIGCLMCVMACPFGHPKYEPE 120


>gi|301327286|ref|ZP_07220542.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           78-1]
 gi|300846149|gb|EFK73909.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           78-1]
 gi|323946628|gb|EGB42651.1| glutamate synthase [Escherichia coli H120]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|74313445|ref|YP_311864.1| putative oxidoreductase Fe-S binding subunit [Shigella sonnei
           Ss046]
 gi|73856922|gb|AAZ89629.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|323167910|gb|EFZ53600.1| hypothetical protein SS53G_1789 [Shigella sonnei 53G]
 gi|323173883|gb|EFZ59512.1| hypothetical protein ECLT68_2202 [Escherichia coli LT-68]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|46579698|ref|YP_010506.1| reductase, iron-sulfur binding subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602822|ref|YP_967222.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46449113|gb|AAS95765.1| reductase, iron-sulfur binding subunit, putative [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563051|gb|ABM28795.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfovibrio vulgaris DP4]
 gi|311233493|gb|ADP86347.1| reductase, iron-sulfur binding subunit, putative [Desulfovibrio
           vulgaris RCH1]
          Length = 261

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV VCP    F   +  + +    CI C  C   CP  A   +         
Sbjct: 124 CNHCENPPCVRVCPTKATFKRADGIVVMDYHRCIGCRFCMAGCPYGARSFNFGDPQPHIK 183

Query: 68  KINSEYATQWPNITTKK 84
            IN ++  +   +  K 
Sbjct: 184 AINPKFPARTRGVVEKC 200


>gi|300947606|ref|ZP_07161778.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           116-1]
 gi|300954275|ref|ZP_07166738.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           175-1]
 gi|301643765|ref|ZP_07243803.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           146-1]
 gi|307139573|ref|ZP_07498929.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           H736]
 gi|331643575|ref|ZP_08344706.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
 gi|887837|gb|AAA83068.1| ORF_f644 [Escherichia coli]
 gi|300318736|gb|EFJ68520.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           175-1]
 gi|300452803|gb|EFK16423.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           116-1]
 gi|301077864|gb|EFK92670.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           146-1]
 gi|315137486|dbj|BAJ44645.1| oxidoreductase Fe-S binding subunit [Escherichia coli DH1]
 gi|331037046|gb|EGI09270.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|21672444|ref|NP_660511.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008868|sp|Q8K9Y0|NUOI_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21623057|gb|AAM67722.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 180

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C  VCPVDC          G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  GERCVACNL--CAVVCPVDCISLQKSEKKNGRWYPKFFRINFSRCIFCGLCEEACPTAAI 114

Query: 56  KPDTEPGLELWLKIN 70
           +   +  L  + + N
Sbjct: 115 QLMPDFELSDFNRQN 129


>gi|15803423|ref|NP_289456.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15833013|ref|NP_311786.1| oxidoreductase Fe-S binding subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|195936503|ref|ZP_03081885.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208821824|ref|ZP_03262144.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|217327438|ref|ZP_03443521.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|261226199|ref|ZP_05940480.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256546|ref|ZP_05949079.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291284207|ref|YP_003501025.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|12517413|gb|AAG58015.1|AE005519_1 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13363231|dbj|BAB37182.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. Sakai]
 gi|208741947|gb|EDZ89629.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209760638|gb|ACI78631.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760640|gb|ACI78632.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760642|gb|ACI78633.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760644|gb|ACI78634.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|209760646|gb|ACI78635.1| putative oxidoreductase, Fe-S subunit [Escherichia coli]
 gi|217319805|gb|EEC28230.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|290764080|gb|ADD58041.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|320189229|gb|EFW63888.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640529|gb|EFX10068.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320645776|gb|EFX14761.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651076|gb|EFX19516.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320667167|gb|EFX34130.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326339030|gb|EGD62845.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|326343087|gb|EGD66855.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1125]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|283786740|ref|YP_003366605.1| electron transport protein [Citrobacter rodentium ICC168]
 gi|282950194|emb|CBG89830.1| electron transport protein [Citrobacter rodentium ICC168]
          Length = 181

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|255527516|ref|ZP_05394384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255508786|gb|EET85158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 184

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CPV+   + +  + ++   CI C  C   CPV A+
Sbjct: 64  CRHCEDAPCANACPVNAIEQDDGSIRVNESACIGCKTCMLVCPVGAV 110


>gi|238919983|ref|YP_002933498.1| hypothetical protein NT01EI_2087 [Edwardsiella ictaluri 93-146]
 gi|259646560|sp|C5BDE6|RNFB_EDWI9 RecName: Full=Electron transport complex protein rnfB
 gi|238869552|gb|ACR69263.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 191

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        L  +  D+C  CG+C P CP   I+
Sbjct: 115 NCIGC--TKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQ 162



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 111 IDEANCIGCTKCIQSCPVDAI 131


>gi|288550044|ref|ZP_05969087.2| putative anaerobic DMSO reductase chain B iron-sulfur subunit
          [Enterobacter cancerogenus ATCC 35316]
 gi|288316529|gb|EFC55467.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
          [Enterobacter cancerogenus ATCC 35316]
          Length = 166

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  C+  CPV+ + + ++ + +H P+ CI C  C   CP  A + + E
Sbjct: 37 ACNHCENPACLAACPVEAYTKRDDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 90


>gi|213420829|ref|ZP_03353895.1| electron transport protein HydN [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 132

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 9  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 61


>gi|150401223|ref|YP_001324989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013926|gb|ABR56377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 131

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CPV      E  +    DECI C  C   CP +A++   E
Sbjct: 80  DKCIDCG--ACVVHCPVKAISVEEYKIIFDYDECIGCKNCVKVCPTNAVEVLDE 131



 Score = 40.9 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDT 59
           + D+CIDCG C   CPV AI  + 
Sbjct: 78  NEDKCIDCGACVVHCPVKAISVEE 101


>gi|110834471|ref|YP_693330.1| electron transport complex protein RnfB [Alcanivorax borkumensis
           SK2]
 gi|122959433|sp|Q0VP40|RNFB_ALCBS RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|110647582|emb|CAL17058.1| electron transport complex protein rnfB, putative [Alcanivorax
           borkumensis SK2]
          Length = 194

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I   + 
Sbjct: 109 AYIREDECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVEPCPVDCIDMLEV 166

Query: 60  EPGLELW 66
           +P L+ W
Sbjct: 167 KPTLQTW 173


>gi|323935882|gb|EGB32181.1| glutamate synthase [Escherichia coli E1520]
          Length = 641

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 113


>gi|309703247|emb|CBJ02582.1| putative oxidoreductase [Escherichia coli ETEC H10407]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|301064770|ref|ZP_07205150.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441145|gb|EFK05530.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 196

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C+  C  +  +       + I+PD+CI+C  C   CP   I+   + 
Sbjct: 60  CRHCEPAPCMAACLANAIFRDPEKETVLINPDKCINCASCAMACPYGVIRFHEDA 114


>gi|298488743|ref|ZP_07006772.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156816|gb|EFH97907.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 290

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 113 MHTVIVDECTGCDL--CVAPCPVDCIEM 138


>gi|242399760|ref|YP_002995185.1| Indolepyruvate: ferredoxin oxidoreductase (IOR), subunit alpha
           [Thermococcus sibiricus MM 739]
 gi|242266154|gb|ACS90836.1| Indolepyruvate: ferredoxin oxidoreductase (IOR), subunit alpha
           [Thermococcus sibiricus MM 739]
          Length = 632

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + C  CK    +  CP   F E    +++    C  CG+CE  CP D I   ++
Sbjct: 575 VIKDKCTGCKACALLTGCPALVFDEERGKISVDSLICTGCGLCEQLCPFDVIVYPSK 631


>gi|215484255|ref|YP_002326482.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260555960|ref|ZP_05828180.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332853651|ref|ZP_08434881.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332870830|ref|ZP_08439475.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
 gi|193076747|gb|ABO11457.2| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
 gi|213987984|gb|ACJ58283.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260410871|gb|EEX04169.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332728475|gb|EGJ59849.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332731931|gb|EGJ63209.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
          Length = 263

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           PV      +   AI   DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRMKAIIREDECIGCTKCINACPVDAI 107


>gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469]
 gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469]
          Length = 626

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V+  E C  C    C + CPV            I P+ CI C  C+  C  DAI  +
Sbjct: 570 FVINPEYCKGCG--KCAKNCPVGAITGVRRECYHIDPNICIKCSACKDNCAFDAIYVE 625



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 27  YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +      I+P+ C  CG C   CPV AI
Sbjct: 564 CQAMRRFVINPEYCKGCGKCAKNCPVGAI 592


>gi|255536839|ref|XP_002509486.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus
           communis]
 gi|223549385|gb|EEF50873.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus
           communis]
          Length = 222

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAICPAQAITIEAEERED 147



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|218559879|ref|YP_002392792.1| oxidoreductase Fe-S binding subunit [Escherichia coli S88]
 gi|218366648|emb|CAR04402.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli S88]
 gi|222034582|emb|CAP77324.1| Uncharacterized protein ygfT [Escherichia coli LF82]
 gi|281179892|dbj|BAI56222.1| putative oxidoreductase [Escherichia coli SE15]
 gi|294489481|gb|ADE88237.1| protein aegA [Escherichia coli IHE3034]
 gi|307554863|gb|ADN47638.1| putative oxidoreductase, Fe-S subunit [Escherichia coli ABU 83972]
 gi|312947419|gb|ADR28246.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|218555435|ref|YP_002388348.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           IAI1]
 gi|218696482|ref|YP_002404149.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           55989]
 gi|260845554|ref|YP_003223332.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O103:H2 str. 12009]
 gi|260857009|ref|YP_003230900.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|260869563|ref|YP_003235965.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|307310495|ref|ZP_07590143.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|218353214|emb|CAU99127.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli 55989]
 gi|218362203|emb|CAQ99821.1| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli IAI1]
 gi|257755658|dbj|BAI27160.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|257760701|dbj|BAI32198.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O103:H2 str. 12009]
 gi|257765919|dbj|BAI37414.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|306909390|gb|EFN39885.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|315062190|gb|ADT76517.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli W]
 gi|323183439|gb|EFZ68836.1| hypothetical protein ECOK1357_3218 [Escherichia coli 1357]
 gi|323377226|gb|ADX49494.1| glutamate synthase, small subunit [Escherichia coli KO11]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|215488186|ref|YP_002330617.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266258|emb|CAS10687.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli O127:H6 str. E2348/69]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|209920341|ref|YP_002294425.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SE11]
 gi|209913600|dbj|BAG78674.1| putative oxidoreductase [Escherichia coli SE11]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|206575763|ref|YP_002236942.1| electron transport protein HydN [Klebsiella pneumoniae 342]
 gi|288933898|ref|YP_003437957.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|290511021|ref|ZP_06550390.1| electron transporter HydN [Klebsiella sp. 1_1_55]
 gi|206564821|gb|ACI06597.1| electron transport protein HydN [Klebsiella pneumoniae 342]
 gi|288888627|gb|ADC56945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|289776014|gb|EFD84013.1| electron transporter HydN [Klebsiella sp. 1_1_55]
          Length = 175

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
              C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P +  
Sbjct: 55  ATACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRH 114


>gi|168760013|ref|ZP_02785020.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|187776143|ref|ZP_02800769.2| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|188024587|ref|ZP_02772659.2| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|189009935|ref|ZP_02803905.2| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|189401888|ref|ZP_02778830.2| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|189402895|ref|ZP_02791885.2| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|189404784|ref|ZP_02810738.2| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|189405896|ref|ZP_02825025.2| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|208806338|ref|ZP_03248675.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812191|ref|ZP_03253520.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|209398308|ref|YP_002272360.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|187768802|gb|EDU32646.1| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|188017760|gb|EDU55882.1| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|189003254|gb|EDU72240.1| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|189358372|gb|EDU76791.1| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|189363783|gb|EDU82202.1| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|189369334|gb|EDU87750.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|189374106|gb|EDU92522.1| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|189377665|gb|EDU96081.1| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|208726139|gb|EDZ75740.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733468|gb|EDZ82155.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|209159708|gb|ACI37141.1| glutamate synthase, small subunit [Escherichia coli O157:H7 str.
           EC4115]
          Length = 641

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 113


>gi|157155252|ref|YP_001464036.1| formate hydrogenlyase, subunit B [Escherichia coli E24377A]
 gi|157077282|gb|ABV16990.1| formate hydrogenlyase, subunit B [Escherichia coli E24377A]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|153952794|ref|YP_001393559.1| hydrogenase [Clostridium kluyveri DSM 555]
 gi|219853459|ref|YP_002470581.1| hypothetical protein CKR_0116 [Clostridium kluyveri NBRC 12016]
 gi|146345675|gb|EDK32211.1| Predicted hydrogenase [Clostridium kluyveri DSM 555]
 gi|219567183|dbj|BAH05167.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 447

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C     T C + CP D    ++ +N   I  D+C DCG C   CP  +I  
Sbjct: 82  SQECRDGDKTLCEKSCPFDAIFIHKEKNHPFIDKDKCTDCGFCVDACPNGSIMD 135


>gi|170018867|ref|YP_001723821.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli ATCC
           8739]
 gi|169753795|gb|ACA76494.1| glutamate synthase, small subunit [Escherichia coli ATCC 8739]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|113867422|ref|YP_725911.1| benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
 gi|113526198|emb|CAJ92543.1| Benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
          Length = 416

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     +    +  D C  C  C   CP  AI
Sbjct: 15 EICIRCN--TCEDTCPIDAITHDDRNYVVRADVCNGCNACLSPCPTGAI 61



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDDR 37


>gi|89109666|ref|AP_003446.1| fused predicted oxidoreductase Fe-S subunit and nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. W3110]
 gi|90111509|ref|NP_417363.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|170082448|ref|YP_001731768.1| fused oxidoreductase: Fe-S subunit; nucleotide-binding subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238902012|ref|YP_002927808.1| fused putative oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli BW2952]
 gi|6136710|sp|Q46820|YGFT_ECOLI RecName: Full=Uncharacterized protein ygfT
 gi|85675699|dbj|BAE76952.1| fused predicted oxidoreductase Fe-S subunit and nucleotide-binding
           subunit [Escherichia coli str. K12 substr. W3110]
 gi|87082180|gb|AAC75925.2| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|169890283|gb|ACB03990.1| fused predicted oxidoreductase: Fe-S subunit; nucleotide-binding
           subunit [Escherichia coli str. K-12 substr. DH10B]
 gi|238861232|gb|ACR63230.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli BW2952]
 gi|260448068|gb|ACX38490.1| glutamate synthase, small subunit [Escherichia coli DH1]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|117919087|ref|YP_868279.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117611419|gb|ABK46873.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 251

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C++  C+ +CP    ++  + + + + + C+ CG C   CP DA
Sbjct: 98  CNHCENPPCIPICPTGATFQRPDGIVVVNNEWCVGCGYCVQACPYDA 144


>gi|333001982|gb|EGK21548.1| protein aegA [Shigella flexneri K-218]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|331000824|ref|ZP_08324470.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329570352|gb|EGG52085.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 210

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C  C+   C++VCP+   Y+G +  + I  D+CI C  C   CP      + +     +
Sbjct: 55  SCQHCEDPACLKVCPMKAVYKGPHGEILIDQDKCIACKACLAACPYGMPMFNDQKLTSYF 114

Query: 67  LKINSEYATQWPNITTKKESLPSAAK 92
            +    ++   P     K + P  A+
Sbjct: 115 GEKQPLFSPSNPP---TKNAQPGKAE 137


>gi|324119927|gb|EGC13806.1| glutamate synthase [Escherichia coli E1167]
          Length = 641

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 57  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 113


>gi|160877323|ref|YP_001556639.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862845|gb|ABX51379.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269528|gb|ADT96381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 553

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALHSYLNKVVSRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C +C    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTMC--MSCVAICPTVALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|158319513|ref|YP_001512020.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus
           oremlandii OhILAs]
 gi|158139712|gb|ABW18024.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus
           oremlandii OhILAs]
          Length = 284

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ CK   CV  CP D     E+   I  + CI CG C   CP  AIK
Sbjct: 157 CVGCKQ--CVRSCP-DRMITAEDEPKIDMEGCIHCGRCIQACPTGAIK 201


>gi|300087813|ref|YP_003758335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527546|gb|ADJ26014.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1119

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAI 55
            VV ENC  C +  CV+ CP D           E +  +   P  C  CGVC   CP   I
Sbjct: 1042 VVDENCDGCAY--CVDPCPYDAISLIEYRKNGETKKTVEADPMRCHGCGVCMATCPKQGI 1099


>gi|294491165|gb|ADE89921.1| protein aegA [Escherichia coli IHE3034]
          Length = 636

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|326201306|ref|ZP_08191178.1| putative PAS/PAC sensor protein [Clostridium papyrosolvens DSM
          2782]
 gi|325988874|gb|EGD49698.1| putative PAS/PAC sensor protein [Clostridium papyrosolvens DSM
          2782]
          Length = 574

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV+      +   I  DEC+ CG C   CP +A
Sbjct: 10 NCKNC--YKCIRSCPVNAIAFKNDQAEIIHDECMLCGNCLTVCPQNA 54


>gi|218886034|ref|YP_002435355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756988|gb|ACL07887.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 195

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKP 57
            C  C++  C+  CPV  + + E+ + +H  D CI CG C   CP  A + 
Sbjct: 65  ACNHCENPACLNACPVKAYEKREDGVVVHHQDRCIGCGNCIRSCPYGAPRY 115


>gi|169796778|ref|YP_001714571.1| hypothetical protein ABAYE2765 [Acinetobacter baumannii AYE]
 gi|213156829|ref|YP_002318490.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
 gi|239502943|ref|ZP_04662253.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB900]
 gi|301345598|ref|ZP_07226339.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB056]
 gi|301510039|ref|ZP_07235276.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB058]
 gi|301597671|ref|ZP_07242679.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB059]
 gi|169149705|emb|CAM87596.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213055989|gb|ACJ40891.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
          Length = 263

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           PV      +   AI   DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRMKAIIREDECIGCTKCINACPVDAI 107


>gi|238789980|ref|ZP_04633759.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
 gi|238721928|gb|EEQ13589.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia
           frederiksenii ATCC 33641]
          Length = 205

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C    CV  CP    Y  E +  + ++ D C+ C  CE  CP  A + D +
Sbjct: 60  YYLSIACNHCSSPTCVTGCPTGAMYKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFDAK 119

Query: 61  PGL 63
             L
Sbjct: 120 KKL 122


>gi|320182215|gb|EFW57118.1| putative oxidoreductase Fe-S binding subunit [Shigella boydii ATCC
           9905]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|255626927|gb|ACU13808.1| unknown [Glycine max]
          Length = 222

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAICPAQAITIEAEERED 147



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|254794838|ref|YP_003079675.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|254594238|gb|ACT73599.1| fused predicted oxidoreductase: Fe-S subunit, nucleotide-binding
           subunit [Escherichia coli O157:H7 str. TW14359]
 gi|320656572|gb|EFX24468.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|218134605|ref|ZP_03463409.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989990|gb|EEC56001.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ CI C    CV+ CP  C         G    +I  + C+ CG C   CPV A+K
Sbjct: 156 YHITDACIGCG--TCVQHCPQSCISCVEDAETGNTHFSIRQEHCLHCGACYEHCPVGAVK 213


>gi|119719904|ref|YP_920399.1| cobyrinic acid a,c-diamide synthase [Thermofilum pendens Hrk 5]
 gi|119525024|gb|ABL78396.1| Cobyrinic acid a,c-diamide synthase [Thermofilum pendens Hrk 5]
          Length = 288

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    CV+ C  +    G     +  D C   G C   CP  AI    E   E++ 
Sbjct: 71  ACVKC--WACVDACQFNAIRRGPEGPVVDYDRCEGLGTCAFVCPAGAIGFAEERAGEIYA 128

Query: 68  K 68
            
Sbjct: 129 A 129


>gi|77416915|gb|ABA81853.1| NADH:ubiquinone oxidoreductase-like [Solanum tuberosum]
          Length = 229

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 128 ERCIACKLCEAICPAQAITIEAEERED 154



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 169 CIYCGF--CQEACPVDAIVEGPNF 190


>gi|319940638|ref|ZP_08014981.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319806004|gb|EFW02762.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 230

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           + +  +C  C  + CV+VCP    +     N + ++ D C+ C  C   CP +A  I P+
Sbjct: 93  HYIRVSCQQCVDSPCVKVCPTGACHHDPETNIVTMNTDRCVGCKYCIAACPYNARWINPE 152

Query: 59  TEPGL 63
           T+   
Sbjct: 153 TKVAD 157


>gi|308271661|emb|CBX28269.1| hypothetical protein N47_G35930 [uncultured Desulfobacterium sp.]
          Length = 988

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + C  C    CV  CP      GE     I P +C  CG C  ECP  AI       
Sbjct: 914 VNPDRCAACL--TCVRTCPYGVPRVGEEGYAVIEPSDCHGCGCCVSECPGKAITLKHFTD 971

Query: 63  LELWLKINSEYATQ 76
            ++  K ++ +  Q
Sbjct: 972 DQINAKTDALFYKQ 985



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           Y+ +  C  C    C +VCPV    E                        I  + CI CG
Sbjct: 81  YIDSVKCTACGQ--CRQVCPVTAVNEFDCRLDLRKATFIKFPQAVPLSYTIDRNVCIGCG 138

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINS 71
           +CE  C   AI    +P     +++ +
Sbjct: 139 MCEKACLAGAISYSDQPRFSE-IEVGA 164


>gi|261403301|ref|YP_003247525.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370294|gb|ACX73043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 154

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C++  C E+CPVD  Y  +    +  ++CI CG+C   CP+ AI 
Sbjct: 42 CMQCENAPCKEICPVDAIYLKDGIPIVSKEKCIACGMCALACPIGAIF 89


>gi|110806401|ref|YP_689921.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri 5
           str. 8401]
 gi|110615949|gb|ABF04616.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|34557325|ref|NP_907140.1| hypothetical protein WS0936 [Wolinella succinogenes DSM 1740]
 gi|34483041|emb|CAE10040.1| TTRB [Wolinella succinogenes]
          Length = 269

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  C+   CV VCP    F   +  + +    C  CG C   CP D
Sbjct: 108 QLCNHCEAPSCVSVCPTGATFKRTDGIVVVDNTICWGCGYCLNACPYD 155


>gi|71274587|ref|ZP_00650875.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71898126|ref|ZP_00680312.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|170730849|ref|YP_001776282.1| ferredoxin [Xylella fastidiosa M12]
 gi|71164319|gb|EAO14033.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71732100|gb|EAO34156.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|167965642|gb|ACA12652.1| ferredoxin II [Xylella fastidiosa M12]
          Length = 139

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 82  AWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIE 135


>gi|304314163|ref|YP_003849310.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587622|gb|ADL57997.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 366

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VV   C  C   +CV  CPVD      + + I  D CI C  C   CP      D E  +
Sbjct: 189 VVRGECTECG--ECVSECPVDAMTL-HDGVMIEYDRCIACMNCLDTCPRGVFDLDWERDI 245

Query: 64  ELWLKINSEYA 74
             +++   EYA
Sbjct: 246 PEFIERMMEYA 256


>gi|256372222|ref|YP_003110046.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008806|gb|ACU54373.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
          [Acidimicrobium ferrooxidans DSM 10331]
          Length = 762

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          V+T+ C  C   +C+  CPV+      +   +      C+ C  CE  CP DAI
Sbjct: 8  VLTDRCAGC--QECLIRCPVEAIDLDLDRYVVTVDSARCVGCRQCERVCPFDAI 59


>gi|255657273|ref|ZP_05402682.1| electron transport protein [Clostridium difficile QCD-23m63]
 gi|296451874|ref|ZP_06893592.1| electron transporter [Clostridium difficile NAP08]
 gi|296879730|ref|ZP_06903705.1| electron transporter [Clostridium difficile NAP07]
 gi|296259291|gb|EFH06168.1| electron transporter [Clostridium difficile NAP08]
 gi|296429319|gb|EFH15191.1| electron transporter [Clostridium difficile NAP07]
          Length = 183

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C+  CP     +  N ++++ ++CI C  C   CP  AI
Sbjct: 65  CRHCEDAPCLNSCPQKAIIKENNIMSVNEEKCIGCKTCLLACPFGAI 111


>gi|259484821|tpe|CBF81370.1| TPA: hypothetical protein similar to : Formate hydrogenlyase
           subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit
           (Broad) [Aspergillus nidulans FGSC A4]
          Length = 224

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 123 ERCIACKL--CEAVCPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 180

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 181 ETA----------NAEYATETREELLYNKEKLLANGDKWE 210


>gi|317054480|ref|YP_004118505.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pantoea sp. At-9b]
 gi|316952475|gb|ADU71949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp.
           At-9b]
          Length = 181

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|261344832|ref|ZP_05972476.1| hydrogenase-2 operon protein HybA [Providencia rustigianii DSM
           4541]
 gi|282567281|gb|EFB72816.1| hydrogenase-2 operon protein HybA [Providencia rustigianii DSM
           4541]
          Length = 349

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           + + C+ C   +CV VCPV    +      +   PD C  C  C   CP +
Sbjct: 107 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVHYDPDICTGCRYCMVGCPFN 157


>gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
 gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
          Length = 628

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++++ E C  C  + C   CPV       +    I  ++CI CG C   C   AI  +
Sbjct: 572 FIISPERCKGC--SKCARNCPVGAISGKIKEPFTIDTEKCIKCGACASACAFGAIHIE 627



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I P+ C  C  C   CPV AI
Sbjct: 570 RKFIISPERCKGCSKCARNCPVGAI 594


>gi|171185522|ref|YP_001794441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934734|gb|ACB39995.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 290

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV  CP            + +  D CI C  C   CP +A+  D
Sbjct: 54  CNHCENAPCVNSCPTGALRHNPETGIVQLDKDLCIGCRACTRACPYNAVYID 105



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 24/71 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG---------VCEPECPV 52
           + CI C    C   CP +        + I P     D+C  C           C   CP 
Sbjct: 85  DLCIGC--RACTRACPYNA-------VYIDPRTNKADKCTFCEHLVYSGLLPACVAACPT 135

Query: 53  DA-IKPDTEPG 62
            A I  D E  
Sbjct: 136 GARIFGDIEDP 146


>gi|157159085|ref|YP_001464224.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           E24377A]
 gi|157081115|gb|ABV20823.1| protein aegA homolog [Escherichia coli E24377A]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|148244307|ref|YP_001219001.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326134|dbj|BAF61277.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 181

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           +V  + CI C  T C++ CPVD F      +   I  +EC  C +C P CPVD I 
Sbjct: 109 FVDEQACIGC--TLCIQACPVDAFVGASKMMTQVII-NECTGCDLCIPVCPVDCIY 161



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY 27
           MT V+   C  C    C+ VCPVDC Y
Sbjct: 137 MTQVIINECTGCDL--CIPVCPVDCIY 161


>gi|78043167|ref|YP_360674.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995282|gb|ABB14181.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 213

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +   C+ C    CV+VCPV   Y+ EN +  I  D CI C  C   CP  A
Sbjct: 57  IPRPCMQCDRPACVQVCPVKATYKMENGIVAIDYDRCIGCRYCVVSCPYGA 107


>gi|322706310|gb|EFY97891.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 247

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 182

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 183 ESP----------NAEYATE 192


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C  T C +VCP D           I  D+C+ CG C   C   AI
Sbjct: 541 YVIDPEKCKGC--TLCAKVCPADAISGKVREPHVIDQDKCVKCGACYTACKFGAI 593


>gi|213582546|ref|ZP_03364372.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 122

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|206889382|ref|YP_002249517.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741320|gb|ACI20377.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 465

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
          NC+ C    C  VCP         +  +I  D+CI+CG C   CP  A++ 
Sbjct: 36 NCVGC--HTCSSVCPAGAVKGSFGDKHSIDLDKCINCGQCLLNCPFGAVEQ 84



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I+   C+ C  C   CP  A+K
Sbjct: 32 INEGNCVGCHTCSSVCPAGAVK 53


>gi|26249108|ref|NP_755148.1| electron transport protein HydN [Escherichia coli CFT073]
 gi|91212072|ref|YP_542058.1| electron transport protein HydN [Escherichia coli UTI89]
 gi|26109515|gb|AAN81718.1|AE016765_120 Electron transport protein hydN [Escherichia coli CFT073]
 gi|91073646|gb|ABE08527.1| electron transport protein HydN [Escherichia coli UTI89]
 gi|323377429|gb|ADX49697.1| electron transport protein HydN [Escherichia coli KO11]
          Length = 180

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 63  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 115


>gi|24113797|ref|NP_708307.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri 2a
           str. 301]
 gi|30063848|ref|NP_838019.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri 2a
           str. 2457T]
 gi|24052881|gb|AAN44014.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|30042103|gb|AAP17829.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|332756504|gb|EGJ86855.1| protein aegA [Shigella flexneri 2747-71]
 gi|333016371|gb|EGK35702.1| protein aegA [Shigella flexneri K-304]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|94310165|ref|YP_583375.1| benzoyl-CoA oxygenase subunit A [Cupriavidus metallidurans CH34]
 gi|93354017|gb|ABF08106.1| Benzoyl-CoA oxygenase component A [Cupriavidus metallidurans
          CH34]
          Length = 415

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     +    +  D C  C  C   CP  AI
Sbjct: 15 EICIRCN--TCEDTCPIDAITHDDRNYVVKADVCNACNACLSPCPTGAI 61



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDDR 37


>gi|300820689|ref|ZP_07100840.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           119-7]
 gi|331669620|ref|ZP_08370466.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331678871|ref|ZP_08379545.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
 gi|300526953|gb|EFK48022.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           119-7]
 gi|331063288|gb|EGI35201.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331073701|gb|EGI45022.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|270490039|ref|ZP_06207113.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
 gi|270338543|gb|EFA49320.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
          Length = 211

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++  C  C    CV  CP    +  E +  + ++ D C+ C  CE  CP  A + D 
Sbjct: 65  SYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFDA 124

Query: 60  EPGL 63
           +  L
Sbjct: 125 KKQL 128


>gi|161523689|ref|YP_001578701.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia multivorans ATCC 17616]
 gi|189351547|ref|YP_001947175.1| putative ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|221199980|ref|ZP_03573023.1| ferredoxin [Burkholderia multivorans CGD2M]
 gi|221206865|ref|ZP_03579877.1| ferredoxin [Burkholderia multivorans CGD2]
 gi|160341118|gb|ABX14204.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia multivorans ATCC 17616]
 gi|189335569|dbj|BAG44639.1| putative ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|221173520|gb|EEE05955.1| ferredoxin [Burkholderia multivorans CGD2]
 gi|221180219|gb|EEE12623.1| ferredoxin [Burkholderia multivorans CGD2M]
          Length = 87

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|668987|emb|CAA59063.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 229

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 128 ERCIACKLCEAICPAQAITIEAEERED 154



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 169 CIYCGF--CQEACPVDAIVEGPNF 190


>gi|220932673|ref|YP_002509581.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
 gi|219993983|gb|ACL70586.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
          Length = 288

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 23/118 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C +  C +VC  +    G     I+P +C  CG C   CP DA++        ++
Sbjct: 66  DLCIDCGY--CRQVCNFNAITPG---FEINPIKCEGCGTCVAMCPQDALELKEVETGNVY 120

Query: 67  L-------------KINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           +              I +E + +  +   K      A  + G + K        PG  
Sbjct: 121 ISKTEFLPMVHARLNIGAENSGKLVSEVKKL-----ADNIAGREGKDLILVDGPPGIG 173



 Score = 44.0 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKP 57
          G      +PD CIDCG C   C  +AI P
Sbjct: 57 GGKLAVKNPDLCIDCGYCRQVCNFNAITP 85


>gi|254449088|ref|ZP_05062540.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
          HTCC5015]
 gi|198261280|gb|EDY85573.1| 4Fe-4S ferredoxin, iron-sulfur binding [gamma proteobacterium
          HTCC5015]
          Length = 93

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    C  VCP    Y+GE    I PD C +C        C   CPVD 
Sbjct: 1  MALKITDECINCDV--CEPVCPNQAIYQGEEIFEIDPDLCTECVGHYGEPQCVEICPVDC 58

Query: 55 I-----KPDTEPGLELWLKINSEYATQWPN 79
          I     KP+TE  L L  +   E     P 
Sbjct: 59 IPKDENKPETEAELMLKYERLIELGQTTPT 88


>gi|194438990|ref|ZP_03071074.1| formate hydrogenlyase, subunit B [Escherichia coli 101-1]
 gi|253772421|ref|YP_003035252.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162655|ref|YP_003045763.1| hydrogenase 3, Fe-S subunit [Escherichia coli B str. REL606]
 gi|297517737|ref|ZP_06936123.1| hydrogenase 3, Fe-S subunit [Escherichia coli OP50]
 gi|300930582|ref|ZP_07145974.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|194422111|gb|EDX38114.1| formate hydrogenlyase, subunit B [Escherichia coli 101-1]
 gi|242378280|emb|CAQ33056.1| hydrogenase 3, Fe-S subunit, subunit of hydrogenase 3 and formate
          hydrogenlyase complex [Escherichia coli BL21(DE3)]
 gi|253323465|gb|ACT28067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974556|gb|ACT40227.1| hydrogenase 3, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253978723|gb|ACT44393.1| hydrogenase 3, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|300461524|gb|EFK25017.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|323960616|gb|EGB56242.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971547|gb|EGB66780.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|163802833|ref|ZP_02196722.1| electron transport complex protein RnfB [Vibrio sp. AND4]
 gi|159173373|gb|EDP58196.1| electron transport complex protein RnfB [Vibrio sp. AND4]
          Length = 197

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVSPCPTDCIEMIPV 164

Query: 60  EPGLELWL-KINS 71
           E   E W  K+N+
Sbjct: 165 ETTTESWKWKLNA 177


>gi|145590639|ref|YP_001152641.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282407|gb|ABP49989.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 215

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V + C  C++  CV+ CP    +   E+ L  ++ + CI CG C   CP  A
Sbjct: 81  FVPKQCNHCENAPCVKPCPTGATYKRVEDGLVLVNDELCIGCGACIQACPYGA 133


>gi|89893640|ref|YP_517127.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89333088|dbj|BAE82683.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 206

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           + +   C  C +  CV+ CPV   +   E+ L I   D+CI C +C   CP +A
Sbjct: 59  HHIPVGCQHCANPACVKACPVGATYKREEDGLVIQDYDKCIGCRMCMVACPYNA 112


>gi|22125415|ref|NP_668838.1| anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45442368|ref|NP_993907.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51597008|ref|YP_071199.1| dimethyl sulfoxide reductase chain B protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808149|ref|YP_652065.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Antiqua]
 gi|108811579|ref|YP_647346.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Nepal516]
 gi|145599349|ref|YP_001163425.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Pestoides F]
 gi|149365169|ref|ZP_01887204.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CA88-4125]
 gi|153949240|ref|YP_001400322.1| anaerobic dimethyl sulfoxide reductase, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162418735|ref|YP_001607117.1| putative anaerobic dimethyl sulfoxide reductase subunit B [Yersinia
           pestis Angola]
 gi|165926845|ref|ZP_02222677.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939206|ref|ZP_02227756.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011245|ref|ZP_02232143.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212433|ref|ZP_02238468.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399313|ref|ZP_02304837.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421332|ref|ZP_02313085.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167424462|ref|ZP_02316215.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468500|ref|ZP_02333204.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis FV-1]
 gi|170023696|ref|YP_001720201.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           YPIII]
 gi|186896091|ref|YP_001873203.1| dimethylsulfoxide reductase subunit B [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930015|ref|YP_002347890.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CO92]
 gi|229838554|ref|ZP_04458713.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229895620|ref|ZP_04510791.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Pestoides A]
 gi|229899120|ref|ZP_04514263.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229901853|ref|ZP_04516974.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Nepal516]
 gi|294504721|ref|YP_003568783.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Z176003]
 gi|21958302|gb|AAM85089.1|AE013754_11 anaerobic dimethyl sulfoxide reductase subunit B [Yersinia pestis
           KIM 10]
 gi|45437232|gb|AAS62784.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51590290|emb|CAH21927.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775227|gb|ABG17746.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Nepal516]
 gi|108780062|gb|ABG14120.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Antiqua]
 gi|115348626|emb|CAL21570.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CO92]
 gi|145211045|gb|ABP40452.1| dimethyl sulfoxide reductase chain B protein [Yersinia pestis
           Pestoides F]
 gi|149291582|gb|EDM41656.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis CA88-4125]
 gi|152960735|gb|ABS48196.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pseudotuberculosis IP 31758]
 gi|162351550|gb|ABX85498.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis Angola]
 gi|165912806|gb|EDR31433.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921196|gb|EDR38420.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989923|gb|EDR42224.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206364|gb|EDR50844.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960821|gb|EDR56842.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051817|gb|EDR63225.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056344|gb|EDR66113.1| putative anaerobic dimethyl sulfoxide reductase, B subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750230|gb|ACA67748.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           YPIII]
 gi|186699117|gb|ACC89746.1| dimethylsulfoxide reductase, chain B [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680749|gb|EEO76844.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Nepal516]
 gi|229687522|gb|EEO79595.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229694920|gb|EEO84967.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229701426|gb|EEO89454.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Pestoides A]
 gi|262362783|gb|ACY59504.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis D106004]
 gi|262366708|gb|ACY63265.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis D182038]
 gi|294355180|gb|ADE65521.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis Z176003]
 gi|320014482|gb|ADV98053.1| putative dimethyl sulfoxide reductase chain B protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 205

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++  C  C    CV  CP    +  E +  + ++ D C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFDA 118

Query: 60  EPGL 63
           +  L
Sbjct: 119 KKQL 122


>gi|333016073|gb|EGK35405.1| protein aegA [Shigella flexneri K-227]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|333001599|gb|EGK21167.1| protein aegA [Shigella flexneri VA-6]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|332086656|gb|EGI91796.1| tat (twin-arginine translocation) pathway signal sequence domain
           protein [Shigella boydii 5216-82]
          Length = 328

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +H D+  C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKYVCTGCRYCMVACPYNVPKYD 163


>gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
 gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
          Length = 602

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++TE C  C  T C  +CPV       G+  L I+ + CI CG C   C  +AI+
Sbjct: 542 IITEKCTGC--TACAIMCPVKAISGERGKPHL-INQEACIKCGTCYEVCRFNAIE 593



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPD 58
              I  ++C  C  C   CPV AI  +
Sbjct: 539 KYVIITEKCTGCTACAIMCPVKAISGE 565


>gi|237748883|ref|ZP_04579363.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           OXCC13]
 gi|229380245|gb|EEO30336.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           OXCC13]
          Length = 162

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG+CE  CPVDAI
Sbjct: 61  EKCIGCKL--CESVCPAKAILIETEEREDGTRRTTRYDIDQSKCIFCGLCEEACPVDAI 117



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          ++CI C +CE  CP  AI  +TE   +
Sbjct: 61 EKCIGCKLCESVCPAKAILIETEERED 87


>gi|283797938|ref|ZP_06347091.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291074405|gb|EFE11769.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091868|emb|CBK77975.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Clostridium cf. saccharolyticum K10]
          Length = 209

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y VT+ CI CK   C   CP  C    +  +AI  + C+ CG C   CP  A++
Sbjct: 153 YFVTDKCIGCKL--CYSKCPQKCIDITQKPVAIEQEHCLHCGNCFEICPAGAVE 204


>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 599

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           E C+ C  T C  VCPV+           I P+ C  CG C   C  DAIK
Sbjct: 547 EKCVGC--TACARVCPVNGIIGDIRKPHRIDPEICTRCGSCIEVCRFDAIK 595



 Score = 44.0 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           CP     E    + I  ++C+ C  C   CPV+ I  D      +  +I
Sbjct: 531 CPAKRCKELTR-VVIDEEKCVGCTACARVCPVNGIIGDIRKPHRIDPEI 578


>gi|114567439|ref|YP_754593.1| ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
 gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
          Length = 387

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          V+++C  C H  C  +CP      E      I P +CI+CG C   CP +AI
Sbjct: 12 VSDDCKACDH--CTFICPTGAISGELGQKHHISPKKCINCGQCLINCPFNAI 61


>gi|328952814|ref|YP_004370148.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453138|gb|AEB08967.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1029

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 8    NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLE 64
            NC  C    C+ +CP      GE     IH + C  CG+C  +CP  AI     TEP LE
Sbjct: 956  NCRRCL--SCLAICPFGAVSLGEKGRPTIHVELCRGCGLCAAQCPAQAISMSRLTEPELE 1013

Query: 65   -----LWLKINSE 72
                  +  ++ E
Sbjct: 1014 AQIHGSFFALDRE 1026



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEGENFL---------------AIHPDEC---- 40
           YV    C  C   +C  VCPV   D + +G N                  I+P  C    
Sbjct: 116 YVNISACTGCG--ECTRVCPVKMPDPYNQGLNQTKAIHLPFPQAVPLAAIINPQVCRFFQ 173

Query: 41  -IDCGVCEPECPVDAIKPDTEPGL 63
              CG C   CP  AI    +P  
Sbjct: 174 GKKCGACIKVCPAGAINLQEQPEE 197


>gi|300814154|ref|ZP_07094437.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511811|gb|EFK39028.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 317

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +  +N   I  ++CI+CG C   CP  AI  +    +    +
Sbjct: 217 CISCK--MCEKNCPKDAIHVEDNLARIDYEKCINCGKCVSVCPTGAIFCEYPDRVAKMKE 274



 Score = 40.1 bits (93), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C    CV VC  D  +       +  ++C+ C  C   CP   IK
Sbjct: 144 CGGGTCVSVCEFDAIHMVNGVAQVDKEKCVACMKCINICPKGIIK 188


>gi|256823445|ref|YP_003147408.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Kangiella koreensis DSM 16069]
 gi|256796984|gb|ACV27640.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kangiella
          koreensis DSM 16069]
          Length = 86

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    C   CP +  Y+GE    I PD+C +C        C+  CPVD 
Sbjct: 1  MALKITDECINCDV--CEPECPNEAIYQGEEIYEIDPDKCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I  D E       + N E   ++  +T  K
Sbjct: 59 IPLDEEHP-----ETNEELIVKYEKLTGNK 83


>gi|189460626|ref|ZP_03009411.1| hypothetical protein BACCOP_01267 [Bacteroides coprocola DSM 17136]
 gi|189432585|gb|EDV01570.1| hypothetical protein BACCOP_01267 [Bacteroides coprocola DSM 17136]
          Length = 323

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDA 54
           V  E+C +C   +C+EVCP       ++   I  D   CI C  C  ECP  A
Sbjct: 248 VCNEDCFVCG--ECIEVCPTHAIRISDDGSHIETDVNRCIRCCACVKECPNGA 298


>gi|89896469|ref|YP_519956.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335917|dbj|BAE85512.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 206

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
            C  C++  CV+VCPV   Y+ E   + I+ D CI C  C   CP +A
Sbjct: 65  ACQHCENAACVKVCPVGATYKDELGRVVINYDRCIGCRFCMAACPYNA 112


>gi|116754516|ref|YP_843634.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665967|gb|ABK14994.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 368

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M Y   E C  C    C++ CP       +    I    C+ CG C   C   A+  D  
Sbjct: 189 MVY--KEKCRGCG--RCMKACPRSAISVVDGKAYIDLGVCVGCGECVRACLERAMDFDWA 244

Query: 61  PGLELWLKINSEYA 74
             +  +++   EYA
Sbjct: 245 VAIPPFVERMVEYA 258


>gi|194436857|ref|ZP_03068957.1| protein aegA [Escherichia coli 101-1]
 gi|300925134|ref|ZP_07141048.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           182-1]
 gi|312972873|ref|ZP_07787046.1| uncharacterized protein ygfT [Escherichia coli 1827-70]
 gi|194424339|gb|EDX40326.1| protein aegA [Escherichia coli 101-1]
 gi|300418736|gb|EFK02047.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           182-1]
 gi|310332815|gb|EFQ00029.1| uncharacterized protein ygfT [Escherichia coli 1827-70]
 gi|332344781|gb|AEE58115.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 644

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|330957741|gb|EGH58001.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 291

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD            I  DEC  C +C   CPVD I
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVII-DECTGCDLCIAPCPVDCI 136



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    C+  CPVDC 
Sbjct: 113 MHTVIIDECTGCDL--CIAPCPVDCI 136


>gi|323498080|ref|ZP_08103085.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
 gi|323316860|gb|EGA69866.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
          Length = 193

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 159


>gi|284929331|ref|YP_003421853.1| NADH:ubiquinone oxidoreductase chain I-like protein
          [cyanobacterium UCYN-A]
 gi|284809775|gb|ADB95472.1| NADH:ubiquinone oxidoreductase chain I-like protein
          [cyanobacterium UCYN-A]
          Length = 80

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-------LAIHPDECIDCGVCEPECPV-DAI 55
          +VT+ C      DC E CPV C +EG            I    CIDCG+C   CPV  AI
Sbjct: 11 IVTKVCEGV--ADCAEACPVACIHEGPGKNLKGTSWYWIDFSVCIDCGICLQVCPVKGAI 68

Query: 56 KPDTEPGLEL 65
            +  P  + 
Sbjct: 69 IAEERPEYQE 78


>gi|238760425|ref|ZP_04621564.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
 gi|238701377|gb|EEP93955.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
          Length = 207

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVAPCPTDCIE 163


>gi|224077832|ref|XP_002305427.1| predicted protein [Populus trichocarpa]
 gi|222848391|gb|EEE85938.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAICPAQAITIEAEERED 147



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|213424374|ref|ZP_03357198.1| hydrogenase 2 protein HybA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 261

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|45358921|ref|NP_988478.1| ferredoxin [Methanococcus maripaludis S2]
 gi|45047787|emb|CAF30914.1| ferredoxin [Methanococcus maripaludis S2]
          Length = 132

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    CV  CPV      E F + +  DECI C  C   CPV+AIK
Sbjct: 80  EKCIDCG--ACVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICPVNAIK 128



 Score = 40.9 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 26  FYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTE 60
           F E E+   I     ++CIDCG C   CPV A+  D E
Sbjct: 65  FGEAEDIPKIIQKDDEKCIDCGACVVHCPVGALSVDEE 102


>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 596

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C + CP +           I  D+CI CG C  +CP DAI 
Sbjct: 546 DKCKGCG--ICAKNCPTNAISGKVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I PD+C  CG+C   CP +AI
Sbjct: 530 CPAG-VCQALLKFRIDPDKCKGCGICAKNCPTNAI 563


>gi|206560783|ref|YP_002231548.1| ferredoxin [Burkholderia cenocepacia J2315]
 gi|198036825|emb|CAR52725.1| putative electron transport-related protein [Burkholderia
           cenocepacia J2315]
          Length = 303

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAMLPV 137

Query: 59  --TEPGLELWLKINSEYATQ 76
                G E W +  ++ A +
Sbjct: 138 TGDRTGWEAWSQEQADAARE 157


>gi|187477071|ref|YP_785095.1| ferredoxin [Bordetella avium 197N]
 gi|115421657|emb|CAJ48167.1| ferredoxin [Bordetella avium 197N]
          Length = 84

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +    GE++  I PD C +C        C+  CPV+ 
Sbjct: 1  MALLITDECINCDV--CEPQCPNEAISMGEDYYVIDPDLCTECVGHYDEPQCKVVCPVEC 58

Query: 55 IK--PDTEPGLE 64
          I+  P  + G E
Sbjct: 59 IELHPQWKEGQE 70


>gi|56698380|ref|YP_168753.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56680117|gb|AAV96783.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 268

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 100 SCLHCEDAPCVTVCPTGASYKRSEDGIVLVNESDCIGCGLCAWACPYGARELDLAEG 156


>gi|28898786|ref|NP_798391.1| tetrathionate reductase subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364141|ref|ZP_05776847.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus K5030]
 gi|260877224|ref|ZP_05889579.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           AN-5034]
 gi|260897830|ref|ZP_05906326.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           Peru-466]
 gi|28807005|dbj|BAC60275.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308087620|gb|EFO37315.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           Peru-466]
 gi|308090343|gb|EFO40038.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus
           AN-5034]
 gi|308115222|gb|EFO52762.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus K5030]
          Length = 255

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 590

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           Y++  + C+ C    CV  CP DC   GEN     I  + C  CG C   CP
Sbjct: 530 YIIDPDRCMGCGL--CVYACPADCIKGGENNQPYYIEQENCSKCGACLDICP 579



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
              I PD C+ CG+C   CP D IK   E     +++
Sbjct: 529 QYIIDPDRCMGCGLCVYACPADCIKGG-ENNQPYYIE 564


>gi|332305736|ref|YP_004433587.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173065|gb|AEE22319.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 188

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 111 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVDPCPVDCI 163



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           VE   +D  +  E+      I  DECI C  C   CPVDAI
Sbjct: 93  VEATSLDAAHGTEDIKKVAYIREDECIGCTKCIQACPVDAI 133



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CV+ CPVDC 
Sbjct: 140 MHTVISDECTGCDL--CVDPCPVDCI 163


>gi|282882923|ref|ZP_06291528.1| electron transport complex, rnfaBcdge type, b subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281297334|gb|EFA89825.1| electron transport complex, rnfaBcdge type, b subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 317

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +  +N   I  ++CI+CG C   CP  AI  +    +    +
Sbjct: 217 CISCK--MCEKNCPKDAIHVEDNLARIDYEKCINCGKCVSVCPTGAIFCEYPDRVAKMKE 274



 Score = 40.1 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C    CV VC  D  +       +  ++C+ C  C   CP   IK
Sbjct: 144 CGGGTCVSVCEFDAIHMVNGVAQVDKEKCVACMKCINICPKGIIK 188


>gi|288932304|ref|YP_003436364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894552|gb|ADC66089.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 127

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           TE C+ C    C+ VCP   F  GE+  + ++  +CI CG C   CP+ A++
Sbjct: 75  TEKCVDCG--ACISVCPTGVFERGEDDRIVVNEVKCIRCGFCVGVCPLKALR 124


>gi|238921129|ref|YP_002934644.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
 gi|238870698|gb|ACR70409.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
          Length = 204

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI
Sbjct: 49 QMCHHCEDAPCALVCPVNAITRQDGAIQLNESLCVGCKLCGIACPFGAI 97


>gi|224437244|ref|ZP_03658221.1| ferredoxin [Helicobacter cinaedi CCUG 18818]
 gi|313143705|ref|ZP_07805898.1| ferredoxin [Helicobacter cinaedi CCUG 18818]
 gi|313128736|gb|EFR46353.1| ferredoxin [Helicobacter cinaedi CCUG 18818]
          Length = 83

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++   CI C    C E CP     EG+   +I PD C +C        C   CPVDA
Sbjct: 1  MALMINNECIACD--ACAEECPNGAIEEGDPIYSIDPDVCTECVGSYDEPSCLSVCPVDA 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|254509402|ref|ZP_05121485.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
 gi|219547676|gb|EED24718.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
          Length = 193

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 159


>gi|116515045|ref|YP_802674.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285559|sp|Q057W8|NUOI_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116256899|gb|ABJ90581.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 181

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 14/76 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           +E C+ C    C  VCPV+C      E +N         I+   CI CG+CE  CP  AI
Sbjct: 57  SERCVACNL--CSAVCPVNCISLKKSEEKNGRWYAKSFQINLSRCIFCGLCEEACPTMAI 114

Query: 56  K--PDTEPGLELWLKI 69
           +  PD E       ++
Sbjct: 115 QLTPDIELSEFKRKEL 130


>gi|126700934|ref|YP_001089831.1| electron transport protein [Clostridium difficile 630]
 gi|115252371|emb|CAJ70212.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 183

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C+  CP     +  N ++++ ++CI C  C   CP  AI
Sbjct: 65  CRHCEDAPCLNSCPQKAIVKENNIMSVNEEKCIGCKTCLLACPFGAI 111


>gi|90417027|ref|ZP_01224956.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
 gi|90331374|gb|EAS46618.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
          Length = 209

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 115 AYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIADECTGCDLCVEPCPVDCI 167



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    CVE CPVDC 
Sbjct: 144 MHTVIADECTGCDL--CVEPCPVDCI 167


>gi|37680406|ref|NP_935015.1| tetrathionate reductase, subunit B [Vibrio vulnificus YJ016]
 gi|37199153|dbj|BAC94986.1| tetrathionate reductase, subunit B [Vibrio vulnificus YJ016]
          Length = 255

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ E+ +  +    C+ C  C   CP DA
Sbjct: 109 CNHCDNPPCVAVCPVQATYQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|281601872|gb|ADA74856.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2002017]
          Length = 654

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 51 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 95


>gi|159905593|ref|YP_001549255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887086|gb|ABX02023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 393

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGV 45
           M    T +CI C   +CVE CP +    G                  L I  + C+ CG 
Sbjct: 76  MPVFDTGSCINCG--NCVESCPTNVLEMGTLRKEANELLWNVPKLVNLVIDEEVCVSCGS 133

Query: 46  CEPECPVDAI 55
           CE  CPV+AI
Sbjct: 134 CENACPVNAI 143



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           E C+ C    C   CPV+      N L  I  + C+ C  C   CPV+ AI    EP L 
Sbjct: 126 EVCVSCG--SCENACPVNAISHNSNGLYEIDVNLCVSCKNCVEACPVENAIVTYDEPKLS 183

Query: 65  LWLKI 69
             ++I
Sbjct: 184 EQIEI 188



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C  + C E CP D           +N        CI+CG C   CP + ++
Sbjct: 47  EKCISC--SACAESCPSDAITIEYNEEFKKNMPVFDTGSCINCGNCVESCPTNVLE 100



 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++ E  CI C    C   C V       +  N   I+P+ C+ C +C   CPVDA+
Sbjct: 276 YIIDEEKCIGC--RICYRACNVPEAISISKETNLPYINPEYCVRCAICRNVCPVDAV 330



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 12  CKHTDCVEVCPVDCFYEG---------ENFLAIHPDECIDCGVCEPECPV-DAI 55
            K   C+EVCP      G          +   I  ++CI C +C   C V +AI
Sbjct: 246 VKSGKCLEVCPTTAIRIGIPEKITKRTSDCYIIDEEKCIGCRICYRACNVPEAI 299



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          P++CI C  C   CP DAI  +     + 
Sbjct: 46 PEKCISCSACAESCPSDAITIEYNEEFKK 74


>gi|126641075|ref|YP_001084059.1| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
          Length = 181

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 8  DECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 55



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  DECI C  C   CPVDAI
Sbjct: 5  IREDECIGCTKCINACPVDAI 25


>gi|260905039|ref|ZP_05913361.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Brevibacterium linens BL2]
          Length = 381

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+   +
Sbjct: 180 SDVCKHCTHAGCLDVCPTGALFRTEFDTVVVQNDVCNGCGTCVAGCPFGVIERRDD 235


>gi|82703846|ref|YP_413412.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosospira multiformis
          ATCC 25196]
 gi|82411911|gb|ABB76020.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosospira
          multiformis ATCC 25196]
          Length = 86

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE +  I+PD C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CQPECPNSAISPGEEYYEINPDLCTECVGHHEESQCVEVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 5/40 (12%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQW 77
          DECI+C VC+PECP  AI P      E + +IN +  T+ 
Sbjct: 7  DECINCDVCQPECPNSAISPG-----EEYYEINPDLCTEC 41


>gi|78067605|ref|YP_370374.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia sp. 383]
 gi|77968350|gb|ABB09730.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia sp.
          383]
          Length = 88

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|89073353|ref|ZP_01159877.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
 gi|89050840|gb|EAR56314.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
          Length = 194

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  -DTEPGLEL 65
            +T    + 
Sbjct: 165 KETPDNWKW 173


>gi|109899273|ref|YP_662528.1| electron transport complex protein RnfB [Pseudoalteromonas
           atlantica T6c]
 gi|109701554|gb|ABG41474.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 111 AFIREDECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVDPCPVDCI 163



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CV+ CPVDC 
Sbjct: 140 MHTVISDECTGCDL--CVDPCPVDCI 163


>gi|311278319|ref|YP_003940550.1| electron transport protein HydN [Enterobacter cloacae SCF1]
 gi|308747514|gb|ADO47266.1| electron transport protein HydN [Enterobacter cloacae SCF1]
          Length = 175

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
              C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 55  ATACRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|260550717|ref|ZP_05824925.1| electron transport complex [Acinetobacter sp. RUH2624]
 gi|260406223|gb|EEW99707.1| electron transport complex [Acinetobacter sp. RUH2624]
          Length = 263

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    I  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCINACPVDAIIGSGKLMHTILTDLCTGCELCIPPCPVDCI 137



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           PV      +   AI   DECI C  C   CPVDAI
Sbjct: 73  PVQADGRPQRMKAIIREDECIGCTKCINACPVDAI 107


>gi|238919751|ref|YP_002933266.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
 gi|238869320|gb|ACR69031.1| 4Fe-4S binding domain protein [Edwardsiella ictaluri 93-146]
          Length = 190

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C    CV VCP    +  +N +  +    CI C  C   CP      D   G
Sbjct: 61  SCQHCADAPCVSVCPTGASFRDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSG 116


>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
 gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
          Length = 595

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + C  C  T C   CP D      +    I+ D+C+ CG C  +C   AI  +
Sbjct: 544 ADKCKGC--TLCARTCPNDAITGAVKEPHVINQDKCVKCGACMEKCRFGAIYKE 595



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I  D+C  C +C   CP DAI
Sbjct: 529 CPAG-VCKALLSYKIDADKCKGCTLCARTCPNDAI 562


>gi|89896641|ref|YP_520128.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89336089|dbj|BAE85684.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 183

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C +VCP    Y+ E+ +  I   +CI C  C   CP +A
Sbjct: 59  CQHCDDAPCQKVCPTGATYKREDGIVLIDAQKCIGCKYCMVACPYNA 105


>gi|74312993|ref|YP_311412.1| putative oxidoreductase Fe-S binding subunit [Shigella sonnei
           Ss046]
 gi|73856470|gb|AAZ89177.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|74313291|ref|YP_311710.1| small subunit of hydrogenase-3, iron-sulfur protein [Shigella
          sonnei Ss046]
 gi|73856768|gb|AAZ89475.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          [Shigella sonnei Ss046]
 gi|323167101|gb|EFZ52819.1| hydrogenase-4 component A [Shigella sonnei 53G]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRIDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|16130631|ref|NP_417204.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|24114015|ref|NP_708525.1| small subunit of hydrogenase-3, iron-sulfur protein (part of
          formate hydrogenlyase (FHL) complex) [Shigella flexneri
          2a str. 301]
 gi|26249123|ref|NP_755163.1| formate hydrogenlyase subunit 2 [Escherichia coli CFT073]
 gi|30064078|ref|NP_838249.1| small subunit of hydrogenase-3, iron-sulfur protein (part of
          formate hydrogenlyase (FHL) complex) [Shigella flexneri
          2a str. 2457T]
 gi|89109511|ref|AP_003291.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          W3110]
 gi|110642847|ref|YP_670577.1| formate hydrogenase-3 component B [Escherichia coli 536]
 gi|110806649|ref|YP_690169.1| small subunit of hydrogenase-3, iron-sulfur protein [Shigella
          flexneri 5 str. 8401]
 gi|157162170|ref|YP_001459488.1| formate hydrogenlyase, subunit B [Escherichia coli HS]
 gi|170019030|ref|YP_001723984.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Escherichia coli ATCC 8739]
 gi|170082300|ref|YP_001731620.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170684164|ref|YP_001744873.1| formate hydrogenlyase, subunit B [Escherichia coli SMS-3-5]
 gi|191171371|ref|ZP_03032920.1| formate hydrogenlyase, subunit B [Escherichia coli F11]
 gi|215488040|ref|YP_002330471.1| hydrogenase 3, Fe-S subunit [Escherichia coli O127:H6 str.
          E2348/69]
 gi|218690848|ref|YP_002399060.1| hydrogenase 3, Fe-S subunit [Escherichia coli ED1a]
 gi|218706218|ref|YP_002413737.1| hydrogenase 3, Fe-S subunit [Escherichia coli UMN026]
 gi|227888262|ref|ZP_04006067.1| hydrogenase 3, Fe-S subunit [Escherichia coli 83972]
 gi|238901861|ref|YP_002927657.1| hydrogenase 3, Fe-S subunit [Escherichia coli BW2952]
 gi|254037764|ref|ZP_04871822.1| hydrogenase 3 [Escherichia sp. 1_1_43]
 gi|256019497|ref|ZP_05433362.1| hydrogenase 3, Fe-S subunit [Shigella sp. D9]
 gi|256024769|ref|ZP_05438634.1| hydrogenase 3, Fe-S subunit [Escherichia sp. 4_1_40B]
 gi|260856831|ref|YP_003230722.1| hydrogenase 3, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|260869399|ref|YP_003235801.1| hydrogenase 3, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|293406216|ref|ZP_06650142.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1412]
 gi|293412082|ref|ZP_06654805.1| formate hydrogenlyase subunit 2 [Escherichia coli B354]
 gi|293415974|ref|ZP_06658614.1| hycB formate hydrogenlyase subunit 2 [Escherichia coli B185]
 gi|293449040|ref|ZP_06663461.1| hycB [Escherichia coli B088]
 gi|298381953|ref|ZP_06991550.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1302]
 gi|300899963|ref|ZP_07118166.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300906773|ref|ZP_07124455.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300919240|ref|ZP_07135763.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300946998|ref|ZP_07161224.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300954964|ref|ZP_07167376.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300975040|ref|ZP_07172841.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300976816|ref|ZP_07173633.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301027134|ref|ZP_07190503.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|301027393|ref|ZP_07190732.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301049519|ref|ZP_07196477.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|301305385|ref|ZP_07211479.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301645296|ref|ZP_07245246.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307139411|ref|ZP_07498767.1| hydrogenase 3, Fe-S subunit [Escherichia coli H736]
 gi|312965018|ref|ZP_07779258.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|312973066|ref|ZP_07787239.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331643408|ref|ZP_08344539.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H736]
 gi|331658832|ref|ZP_08359774.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA206]
 gi|331664278|ref|ZP_08365184.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA143]
 gi|331674232|ref|ZP_08374992.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA280]
 gi|331684337|ref|ZP_08384929.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H299]
 gi|332280618|ref|ZP_08393031.1| formate hydrogenlyase subunit 2 [Shigella sp. D9]
 gi|77417742|sp|P0AAK2|HYCB_ECOL6 RecName: Full=Formate hydrogenlyase subunit 2; Short=FHL subunit
          2; AltName: Full=Hydrogenase-3 component B
 gi|77417743|sp|P0AAK1|HYCB_ECOLI RecName: Full=Formate hydrogenlyase subunit 2; Short=FHL subunit
          2; AltName: Full=Hydrogenase-3 component B
 gi|77417744|sp|P0AAK3|HYCB_SHIFL RecName: Full=Formate hydrogenlyase subunit 2; Short=FHL subunit
          2; AltName: Full=Hydrogenase-3 component B
 gi|26109530|gb|AAN81733.1|AE016765_135 Formate hydrogenlyase subunit 2 [Escherichia coli CFT073]
 gi|882617|gb|AAA69234.1| formate hydrogenlyase subunit 2 [Escherichia coli str. K-12
          substr. MG1655]
 gi|1789079|gb|AAC75766.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          MG1655]
 gi|24053135|gb|AAN44232.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex) [Shigella
          flexneri 2a str. 301]
 gi|30042334|gb|AAP18059.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex) [Shigella
          flexneri 2a str. 2457T]
 gi|85675545|dbj|BAE76801.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K12 substr.
          W3110]
 gi|110344439|gb|ABG70676.1| formate hydrogenase-3 component B [Escherichia coli 536]
 gi|110616197|gb|ABF04864.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex) [Shigella
          flexneri 5 str. 8401]
 gi|157067850|gb|ABV07105.1| formate hydrogenlyase, subunit B [Escherichia coli HS]
 gi|169753958|gb|ACA76657.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli ATCC 8739]
 gi|169890135|gb|ACB03842.1| hydrogenase 3, Fe-S subunit [Escherichia coli str. K-12 substr.
          DH10B]
 gi|170521882|gb|ACB20060.1| formate hydrogenlyase, subunit B [Escherichia coli SMS-3-5]
 gi|190908305|gb|EDV67895.1| formate hydrogenlyase, subunit B [Escherichia coli F11]
 gi|215266112|emb|CAS10537.1| hydrogenase 3, Fe-S subunit [Escherichia coli O127:H6 str.
          E2348/69]
 gi|218428412|emb|CAR09337.2| hydrogenase 3, Fe-S subunit [Escherichia coli ED1a]
 gi|218433315|emb|CAR14215.1| hydrogenase 3, Fe-S subunit [Escherichia coli UMN026]
 gi|226839388|gb|EEH71409.1| hydrogenase 3 [Escherichia sp. 1_1_43]
 gi|227834531|gb|EEJ44997.1| hydrogenase 3, Fe-S subunit [Escherichia coli 83972]
 gi|238861455|gb|ACR63453.1| hydrogenase 3, Fe-S subunit [Escherichia coli BW2952]
 gi|257755480|dbj|BAI26982.1| hydrogenase 3, Fe-S subunit [Escherichia coli O26:H11 str. 11368]
 gi|257765755|dbj|BAI37250.1| hydrogenase 3, Fe-S subunit [Escherichia coli O111:H- str. 11128]
 gi|260448226|gb|ACX38648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli DH1]
 gi|281602089|gb|ADA75073.1| Formate hydrogenlyase subunit 2 [Shigella flexneri 2002017]
 gi|284922660|emb|CBG35748.1| formate hydrogenlyase subunit 2 [Escherichia coli 042]
 gi|291322130|gb|EFE61559.1| hycB [Escherichia coli B088]
 gi|291426222|gb|EFE99254.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1412]
 gi|291432163|gb|EFF05145.1| hycB formate hydrogenlyase subunit 2 [Escherichia coli B185]
 gi|291468853|gb|EFF11344.1| formate hydrogenlyase subunit 2 [Escherichia coli B354]
 gi|298277093|gb|EFI18609.1| formate hydrogenlyase subunit 2 [Escherichia coli FVEC1302]
 gi|299879307|gb|EFI87518.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300298750|gb|EFJ55135.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300308808|gb|EFJ63328.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300318099|gb|EFJ67883.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300356472|gb|EFJ72342.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300395166|gb|EFJ78704.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300401467|gb|EFJ85005.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300410002|gb|EFJ93540.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300413685|gb|EFJ96995.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300453385|gb|EFK17005.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300839305|gb|EFK67065.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301076414|gb|EFK91220.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307554699|gb|ADN47474.1| formate hydrogenlyase subunit 2 [Escherichia coli ABU 83972]
 gi|309703083|emb|CBJ02415.1| formate hydrogenlyase subunit 2 [Escherichia coli ETEC H10407]
 gi|310333008|gb|EFQ00222.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|312290574|gb|EFR18454.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|313648200|gb|EFS12645.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|315137331|dbj|BAJ44490.1| formate hydrogenlyase subunit 2 [Escherichia coli DH1]
 gi|315254506|gb|EFU34474.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|315293719|gb|EFU53071.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|323154940|gb|EFZ41132.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323172988|gb|EFZ58619.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323180145|gb|EFZ65697.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323183251|gb|EFZ68648.1| hydrogenase-4 component A [Escherichia coli 1357]
 gi|323935720|gb|EGB32034.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941445|gb|EGB37628.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323966871|gb|EGB62300.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|323978666|gb|EGB73748.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
 gi|324005686|gb|EGB74905.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
 gi|324013679|gb|EGB82898.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
 gi|324119974|gb|EGC13852.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|327251447|gb|EGE63133.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
 gi|331036879|gb|EGI09103.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H736]
 gi|331053414|gb|EGI25443.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA206]
 gi|331058209|gb|EGI30190.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA143]
 gi|331068326|gb|EGI39721.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA280]
 gi|331077952|gb|EGI49158.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H299]
 gi|332102970|gb|EGJ06316.1| formate hydrogenlyase subunit 2 [Shigella sp. D9]
 gi|332344605|gb|AEE57939.1| hydrogenase-4 component A [Escherichia coli UMNK88]
 gi|332753437|gb|EGJ83817.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332753946|gb|EGJ84321.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332755662|gb|EGJ86025.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332765670|gb|EGJ95883.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71]
 gi|333000675|gb|EGK20252.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333001067|gb|EGK20637.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333015428|gb|EGK34767.1| hydrogenase-4 component A [Shigella flexneri K-227]
 gi|333015869|gb|EGK35205.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|86147960|ref|ZP_01066264.1| electron transport complex protein RnfB [Vibrio sp. MED222]
 gi|85834285|gb|EAQ52439.1| electron transport complex protein RnfB [Vibrio sp. MED222]
          Length = 197

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|84393395|ref|ZP_00992154.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|148977611|ref|ZP_01814187.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218708973|ref|YP_002416594.1| electron transport complex protein RnfB [Vibrio splendidus LGP32]
 gi|254807928|sp|B7VLT8|RNFB_VIBSL RecName: Full=Electron transport complex protein rnfB
 gi|84376004|gb|EAP92893.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|145963126|gb|EDK28394.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218321992|emb|CAV18005.1| Electron transport complex protein rnfB [Vibrio splendidus LGP32]
          Length = 197

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|332087907|gb|EGI93032.1| protein aegA [Shigella boydii 5216-82]
          Length = 606

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 47


>gi|323936359|gb|EGB32649.1| glutamate synthase [Escherichia coli E1520]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C+ C  T C + CPV C   E +    I+ D CI CG C  +C  DAI
Sbjct: 521 YVIDPEKCVGC--TVCAKACPVSCISGERKEPHLINQDACIKCGQCYQKCKFDAI 573



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
              I P++C+ C VC   CPV  I  + +   
Sbjct: 520 KYVIDPEKCVGCTVCAKACPVSCISGERKEPH 551


>gi|222834638|gb|EEE73101.1| predicted protein [Populus trichocarpa]
          Length = 187

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++  + +  +  + C+ CG C   CP DA  I  +T+   +
Sbjct: 62  CNHCDNPPCVPVCPVQATFQRSDGIVLVDNERCVGCGYCVQACPYDARFINHETQTADK 120


>gi|163783460|ref|ZP_02178451.1| cytochrome b/b6-like protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881224|gb|EDP74737.1| cytochrome b/b6-like protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 651

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ + C  C    C E CP +  Y       E    +  D+C  CG+C   C  +A   D
Sbjct: 297 VIEDRCEGC--RQCFEDCPYEAIYMKRISPEEEKAYVIEDKCAGCGICVASCNYNANVID 354

Query: 59  TEP 61
           T P
Sbjct: 355 TVP 357


>gi|91775091|ref|YP_544847.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus
          flagellatus KT]
 gi|91709078|gb|ABE49006.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
          flagellatus KT]
          Length = 85

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y+GE    I+P+ C +C        C+  CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNGAIYQGEEIYEINPNLCTECVGHFSNPQCQDVCPVGC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPHDPDHAETH 69


>gi|15803241|ref|NP_289273.1| small subunit of hydrogenase-3, iron-sulfur protein (part of
          formate hydrogenlyase (FHL) complex) [Escherichia coli
          O157:H7 EDL933]
 gi|15832834|ref|NP_311607.1| formate hydrogenlyase subunit-7 component B [Escherichia coli
          O157:H7 str. Sakai]
 gi|82778090|ref|YP_404439.1| small subunit of hydrogenase-3, iron-sulfur protein [Shigella
          dysenteriae Sd197]
 gi|168749951|ref|ZP_02774973.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4113]
 gi|168755469|ref|ZP_02780476.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4401]
 gi|168762877|ref|ZP_02787884.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4501]
 gi|168768815|ref|ZP_02793822.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4486]
 gi|168774744|ref|ZP_02799751.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4196]
 gi|168778706|ref|ZP_02803713.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4076]
 gi|168787979|ref|ZP_02812986.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC869]
 gi|168800195|ref|ZP_02825202.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC508]
 gi|191166789|ref|ZP_03028615.1| formate hydrogenlyase, subunit B [Escherichia coli B7A]
 gi|193065023|ref|ZP_03046098.1| formate hydrogenlyase, subunit B [Escherichia coli E22]
 gi|193069629|ref|ZP_03050581.1| formate hydrogenlyase, subunit B [Escherichia coli E110019]
 gi|194427877|ref|ZP_03060423.1| formate hydrogenlyase, subunit B [Escherichia coli B171]
 gi|195938474|ref|ZP_03083856.1| formate hydrogenlyase subunit-7 component B [Escherichia coli
          O157:H7 str. EC4024]
 gi|208808306|ref|ZP_03250643.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4206]
 gi|208814125|ref|ZP_03255454.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4045]
 gi|208820193|ref|ZP_03260513.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4042]
 gi|209399068|ref|YP_002272187.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4115]
 gi|209920163|ref|YP_002294247.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|217327352|ref|ZP_03443435.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          TW14588]
 gi|218555268|ref|YP_002388181.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI1]
 gi|218696318|ref|YP_002403985.1| hydrogenase 3, Fe-S subunit [Escherichia coli 55989]
 gi|254794664|ref|YP_003079501.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|260845367|ref|YP_003223145.1| hydrogenase 3, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|261226018|ref|ZP_05940299.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261256724|ref|ZP_05949257.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          FRIK966]
 gi|291284051|ref|YP_003500869.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          CB9615]
 gi|300815872|ref|ZP_07096096.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820499|ref|ZP_07100650.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300922242|ref|ZP_07138368.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|301326241|ref|ZP_07219624.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|307312853|ref|ZP_07592483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|309795184|ref|ZP_07689603.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|331654201|ref|ZP_08355201.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M718]
 gi|331669457|ref|ZP_08370303.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA271]
 gi|331678698|ref|ZP_08379372.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H591]
 gi|12517172|gb|AAG57831.1|AE005500_10 probable small subunit of hydrogenase-3, iron-sulfur protein
          (part of formate hydrogenlyase (FHL) complex)
          [Escherichia coli O157:H7 str. EDL933]
 gi|13363051|dbj|BAB37003.1| formate hydrogenlyase subunit-7 component B [Escherichia coli
          O157:H7 str. Sakai]
 gi|81242238|gb|ABB62948.1| probable small subunit of hydrogenase-3, iron-sulfur protein
          [Shigella dysenteriae Sd197]
 gi|187769642|gb|EDU33486.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4196]
 gi|188015781|gb|EDU53903.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4113]
 gi|189003372|gb|EDU72358.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357280|gb|EDU75699.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4401]
 gi|189362046|gb|EDU80465.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4486]
 gi|189366874|gb|EDU85290.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4501]
 gi|189372240|gb|EDU90656.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC869]
 gi|189377473|gb|EDU95889.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC508]
 gi|190903160|gb|EDV62883.1| formate hydrogenlyase, subunit B [Escherichia coli B7A]
 gi|192927320|gb|EDV81939.1| formate hydrogenlyase, subunit B [Escherichia coli E22]
 gi|192956992|gb|EDV87443.1| formate hydrogenlyase, subunit B [Escherichia coli E110019]
 gi|194414110|gb|EDX30386.1| formate hydrogenlyase, subunit B [Escherichia coli B171]
 gi|208728107|gb|EDZ77708.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4206]
 gi|208735402|gb|EDZ84089.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4045]
 gi|208740316|gb|EDZ87998.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4042]
 gi|209160468|gb|ACI37901.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          EC4115]
 gi|209761858|gb|ACI79241.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761860|gb|ACI79242.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761862|gb|ACI79243.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761864|gb|ACI79244.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209761866|gb|ACI79245.1| formate hydrogenlyase subunit-7 component B [Escherichia coli]
 gi|209913422|dbj|BAG78496.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|217319719|gb|EEC28144.1| formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          TW14588]
 gi|218353050|emb|CAU98875.1| hydrogenase 3, Fe-S subunit [Escherichia coli 55989]
 gi|218362036|emb|CAQ99643.1| hydrogenase 3, Fe-S subunit [Escherichia coli IAI1]
 gi|254594064|gb|ACT73425.1| hydrogenase 3, Fe-S subunit [Escherichia coli O157:H7 str.
          TW14359]
 gi|257760514|dbj|BAI32011.1| hydrogenase 3, Fe-S subunit [Escherichia coli O103:H2 str. 12009]
 gi|290763924|gb|ADD57885.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          CB9615]
 gi|300421372|gb|EFK04683.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300526763|gb|EFK47832.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531801|gb|EFK52863.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300847086|gb|EFK74846.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|306907288|gb|EFN37794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
          coli W]
 gi|308121155|gb|EFO58417.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|315062000|gb|ADT76327.1| hydrogenase 3, Fe-S subunit [Escherichia coli W]
 gi|320189056|gb|EFW63715.1| Formate hydrogenlyase subunit 2 [Escherichia coli O157:H7 str.
          EC1212]
 gi|320202374|gb|EFW76944.1| Formate hydrogenlyase subunit 2 [Escherichia coli EC4100B]
 gi|320640367|gb|EFX09906.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          G5101]
 gi|320645914|gb|EFX14895.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H- str.
          493-89]
 gi|320651214|gb|EFX19649.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H- str. H
          2687]
 gi|320656764|gb|EFX24652.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320662307|gb|EFX29704.1| Formate hydrogenlyase, subunit B [Escherichia coli O55:H7 str.
          USDA 5905]
 gi|320667358|gb|EFX34316.1| Formate hydrogenlyase, subunit B [Escherichia coli O157:H7 str.
          LSU-61]
 gi|323159848|gb|EFZ45819.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323377417|gb|ADX49685.1| small subunit of hydrogenase-3, iron-sulfur protein [Escherichia
          coli KO11]
 gi|323946395|gb|EGB42423.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324017037|gb|EGB86256.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|326339204|gb|EGD63019.1| Formate hydrogenlyase subunit 2 [Escherichia coli O157:H7 str.
          1044]
 gi|326342913|gb|EGD66681.1| Formate hydrogenlyase subunit 2 [Escherichia coli O157:H7 str.
          1125]
 gi|331047583|gb|EGI19660.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli M718]
 gi|331063125|gb|EGI35038.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli TA271]
 gi|331073528|gb|EGI44849.1| formate hydrogenlyase subunit 2 (FHL subunit 2)
          (Hydrogenase-3component B) [Escherichia coli H591]
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|319789069|ref|YP_004150702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermovibrio ammonificans HB-1]
 gi|317113571|gb|ADU96061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermovibrio ammonificans HB-1]
          Length = 58

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +  E CI C    C  VCP +C +  ++    I  ++CIDCG C   CP +AI  +
Sbjct: 1  MAHKIDPELCIGCG--ACASVCPTNCIHPTDDGKYEIVAEDCIDCGACVEVCPTNAISQE 58



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          I P+ CI CG C   CP + I P  +   E
Sbjct: 5  IDPELCIGCGACASVCPTNCIHPTDDGKYE 34


>gi|312137470|ref|YP_004004807.1| nil domain protein [Methanothermus fervidus DSM 2088]
 gi|311225189|gb|ADP78045.1| NIL domain protein [Methanothermus fervidus DSM 2088]
          Length = 134

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E CI C    CV +CPV      +++   I  ++C+ CG C   CP+ A+
Sbjct: 77  EKCIDCG--ACVSICPVGAISIKDDWTVEIDDEKCVGCGCCVITCPMKAV 124



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
            ++CIDCG C   CPV AI    +
Sbjct: 75 DKEKCIDCGACVSICPVGAISIKDD 99


>gi|307719238|ref|YP_003874770.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
           6192]
 gi|306532963|gb|ADN02497.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
           6192]
          Length = 371

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ + C  C +  C  VCPV C    +         CI C  C   CP +AI+      L
Sbjct: 306 VIEDRCRRCGY--CARVCPVSCITM-DGLPVWDYSRCIYCYCCHENCPHEAIELKEPLLL 362

Query: 64  ELWLK 68
            L+  
Sbjct: 363 RLYRA 367


>gi|291612995|ref|YP_003523152.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583107|gb|ADE10765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 431

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           C+      C+  CP       +     I+P  CI  GVC P CP +AIK
Sbjct: 58  CMG--AGSCITACPEGAIGMIKGKAVLINPTHCIGHGVCAPACPHNAIK 104



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           I+P+ C+  G C   CP  AI
Sbjct: 52 EINPNLCMGAGSCITACPEGAI 73


>gi|261402608|ref|YP_003246832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369601|gb|ACX72350.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 247

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C+E CPV+   +  + + I+ ++CI CG C   CP +AIK
Sbjct: 197 CVGC--FVCIEECPVNAIDQDGDKVKINKEKCILCGRCVDVCPTNAIK 242



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          Y+    C+ C    C + CPV+   + +  N   I  D+C+ C +C   CPV AI 
Sbjct: 38 YIDETKCVRCNL--CYKECPVNAIEKAKVKNPAKIIEDKCVKCEICAQTCPVGAIY 91



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    C   CP +         + ++ D C+ CG CE  CP   IK + E G 
Sbjct: 128 EKCIKCG--ICARFCPTNAIKVVRRKSIEVNLDLCMGCGACESVCPKKCIKVENEIGD 183



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 28/79 (35%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGE------------------------NFLAIHP 37
           ++ + C+ C+   C + CPV   Y  EGE                            +  
Sbjct: 70  IIEDKCVKCE--ICAQTCPVGAIYVIEGEAEVKDEEVHYLIKEKPVPHRKIRLKSYQLDE 127

Query: 38  DECIDCGVCEPECPVDAIK 56
           ++CI CG+C   CP +AIK
Sbjct: 128 EKCIKCGICARFCPTNAIK 146



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          + I   +C+ C +C  ECPV+AI+
Sbjct: 37 IYIDETKCVRCNLCYKECPVNAIE 60


>gi|157162347|ref|YP_001459665.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli HS]
 gi|188493748|ref|ZP_03001018.1| glutamate synthase, small subunit [Escherichia coli 53638]
 gi|253772273|ref|YP_003035104.1| oxidoreductase Fe-S binding subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162799|ref|YP_003045907.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli B
           str. REL606]
 gi|157068027|gb|ABV07282.1| protein aegA [Escherichia coli HS]
 gi|188488947|gb|EDU64050.1| glutamate synthase, small subunit [Escherichia coli 53638]
 gi|253323317|gb|ACT27919.1| glutamate synthase, small subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974700|gb|ACT40371.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli B str. REL606]
 gi|253978866|gb|ACT44536.1| fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding
           subunit [Escherichia coli BL21(DE3)]
 gi|313848739|emb|CAQ33198.2| fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding
           subunit [Escherichia coli BL21(DE3)]
 gi|323971676|gb|EGB66905.1| glutamate synthase [Escherichia coli TA007]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|119496461|ref|XP_001265004.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413166|gb|EAW23107.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 228

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 127 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 184

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
             +          N+EYAT+     +  K++ L +  K +
Sbjct: 185 ETS----------NAEYATETREELLYNKEKLLANGDKWE 214


>gi|74318034|ref|YP_315774.1| electron transport complex protein RnfB [Thiobacillus denitrificans
           ATCC 25259]
 gi|123731760|sp|Q3SHB7|RNFB_THIDA RecName: Full=Electron transport complex protein rnfB
 gi|74057529|gb|AAZ97969.1| Electron transport complex, RnfABCDGE type, B subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 188

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  DEC  C +C   CPVD I
Sbjct: 106 AFIDEQTCIGC--TLCIQACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCI 158


>gi|15837149|ref|NP_297837.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9105406|gb|AAF83357.1|AE003902_2 ferredoxin II [Xylella fastidiosa 9a5c]
          Length = 159

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 102 AWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIE 155


>gi|20092114|ref|NP_618189.1| hypothetical protein MA3299 [Methanosarcina acetivorans C2A]
 gi|19917334|gb|AAM06669.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 438

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI CK     E CP+    +GEN    +P+ C +CG+C   C  +A
Sbjct: 331 EKCIDCKICCVAEACPMGAVSKGENGAVHNPELCFNCGLCISRCKGEA 378



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 37  PDECIDCGVC--EPECPVDAI 55
           P++CIDC +C     CP+ A+
Sbjct: 330 PEKCIDCKICCVAEACPMGAV 350


>gi|89894735|ref|YP_518222.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89334183|dbj|BAE83778.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 183

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDA 54
           +C  C    C  VCPV      ++ + +H +  CI C VC   CP  A
Sbjct: 56  SCRHCSEPQCAAVCPVGAIKSTDDGVVLHNELLCIGCQVCAAVCPYAA 103



 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDE--------------CIDCG 44
          M  ++ + +CI CK   C+  C  +     +N +L +HP E              C  C 
Sbjct: 4  MAMLIDSTSCIGCK--ACLAACKQENGLATDNNYLKMHPVEFLNDHYVRYYAHVSCRHCS 61

Query: 45 --VCEPECPVDAIKPDTE 60
             C   CPV AIK   +
Sbjct: 62 EPQCAAVCPVGAIKSTDD 79


>gi|333002249|gb|EGK21813.1| protein aegA [Shigella flexneri K-272]
          Length = 654

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 51 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 95


>gi|332879175|ref|ZP_08446873.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682833|gb|EGJ55732.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 267

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ T +CI C    C++VCP+  F + +  L ++ + CI C +C   CP D+I  +    
Sbjct: 186 FLNTTSCIKCG--KCMKVCPMSIFQKSDVLLPMNEENCIQCQLCTKHCPTDSIYINESFT 243

Query: 63  LELWLKINSEYATQ 76
             + + +   ++++
Sbjct: 244 NGMRIALREMFSSK 257



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           G N + ++   CI CG C   CP+ +I   ++
Sbjct: 181 GGNVVFLNTTSCIKCGKCMKVCPM-SIFQKSD 211


>gi|296133322|ref|YP_003640569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031900|gb|ADG82668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 272

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C    C +VCP +   +  E  + +  ++CI CG C   CP  
Sbjct: 74  CMHCTEAACEKVCPENAIFHTAEGAVVVDREKCIGCGYCAQYCPFG 119


>gi|238784601|ref|ZP_04628607.1| Hydrogenase-2 operon protein hybA [Yersinia bercovieri ATCC 43970]
 gi|238714470|gb|EEQ06476.1| Hydrogenase-2 operon protein hybA [Yersinia bercovieri ATCC 43970]
          Length = 300

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + + C+ C   +CV VCPV    +      +   P+ C  C  C   CP +  K D +  
Sbjct: 61  IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPNVCTGCRYCMVGCPFNVPKYDYDNP 120

Query: 63  LEL 65
              
Sbjct: 121 FGQ 123


>gi|256822167|ref|YP_003146130.1| RnfABCDGE type electron transport complex subunit B [Kangiella
           koreensis DSM 16069]
 gi|256795706|gb|ACV26362.1| electron transport complex, RnfABCDGE type, B subunit [Kangiella
           koreensis DSM 16069]
          Length = 195

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            I  DEC  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGAPKLMHTVII-DECTGCDLCVEPCPVDCI 159



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
                I  DECI C  C   CPVDAI
Sbjct: 104 PRVAYIREDECIGCTKCIQACPVDAI 129


>gi|237730591|ref|ZP_04561072.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906130|gb|EEH92048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 185

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
            C  C++  C+  CPV+ + + E+ + +H P+ CI C  C   CP  A + + E
Sbjct: 56  ACNHCENPACLAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYGAPRFNEE 109


>gi|254462867|ref|ZP_05076283.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206679456|gb|EDZ43943.1| 4Fe-4S binding domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 257

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEQDCIGCGLCAWACPYGAREMD 133


>gi|220929708|ref|YP_002506617.1| PAS/PAC sensor protein [Clostridium cellulolyticum H10]
 gi|220000036|gb|ACL76637.1| putative PAS/PAC sensor protein [Clostridium cellulolyticum H10]
          Length = 574

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV+      +   I  DEC+ CG C   CP +A
Sbjct: 10 NCKNC--YKCIRSCPVNAIAFKNDQAEIIHDECMLCGNCLTVCPQNA 54


>gi|26248837|ref|NP_754877.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           CFT073]
 gi|227887504|ref|ZP_04005309.1| Fe-S center and glutamate synthase (GltD) protein [Escherichia coli
           83972]
 gi|26109243|gb|AAN81445.1|AE016764_127 AegA protein [Escherichia coli CFT073]
 gi|227835854|gb|EEJ46320.1| Fe-S center and glutamate synthase (GltD) protein [Escherichia coli
           83972]
 gi|307554498|gb|ADN47273.1| putative oxidoreductase [Escherichia coli ABU 83972]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|21230794|ref|NP_636711.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769208|ref|YP_243970.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992355|ref|YP_001904365.1| ferredoxin [Xanthomonas campestris pv. campestris str. B100]
 gi|21112394|gb|AAM40635.1| ferredoxin II [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574540|gb|AAY49950.1| ferredoxin II [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734115|emb|CAP52321.1| Putative ferredoxin [Xanthomonas campestris pv. campestris]
          Length = 139

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCVPACPVDCIE 134


>gi|11498801|ref|NP_070030.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2649382|gb|AAB90042.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 165

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    CV+ CP     + E+    +  D CI C +C   CP  A +   +  + ++
Sbjct: 64  CRHCLSAPCVDECPTGALRKSEDGMTVLDLDLCIGCKICMEVCPFGAPQLGDDGKVRIY 122



 Score = 33.6 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC---IDCG---VCEPECPVDA 54
           MT +  + CI CK   C+EVCP      G++      D C   I+ G    C   C    
Sbjct: 88  MTVLDLDLCIGCK--ICMEVCPFGAPQLGDDGKVRIYDLCMPRIEEGKKPACVSACVAQC 145

Query: 55  IKPDTEPGLEL 65
           ++  +   L+ 
Sbjct: 146 LQVKSVEDLKK 156


>gi|113972005|ref|YP_735798.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|114045777|ref|YP_736327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113886689|gb|ABI40741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
 gi|113887219|gb|ABI41270.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 219

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y  +  C  C    CV+ CP    +   +N L  +    CI CG C   CP DA + DT
Sbjct: 76  AYYTSIGCNHCSEPVCVKACPTGAMHKRKDNGLVLVESSICIGCGSCARACPYDAPQLDT 135

Query: 60  E 60
           +
Sbjct: 136 Q 136


>gi|191172939|ref|ZP_03034474.1| protein aegA [Escherichia coli F11]
 gi|190906803|gb|EDV66407.1| protein aegA [Escherichia coli F11]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|116624728|ref|YP_826884.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116227890|gb|ABJ86599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           ++ V + C  C  + CV+VCPV   +   + +  +  D C+ C  C   CP   
Sbjct: 113 SFFVPKLCNHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQACPYGC 166


>gi|107023739|ref|YP_622066.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
          AU 1054]
 gi|116690826|ref|YP_836449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia cenocepacia HI2424]
 gi|170734151|ref|YP_001766098.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia cenocepacia MC0-3]
 gi|254247173|ref|ZP_04940494.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
          PC184]
 gi|105893928|gb|ABF77093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia
          cenocepacia AU 1054]
 gi|116648915|gb|ABK09556.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia cenocepacia HI2424]
 gi|124871949|gb|EAY63665.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia cenocepacia
          PC184]
 gi|169817393|gb|ACA91976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia cenocepacia MC0-3]
          Length = 88

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|46201601|ref|ZP_00208165.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 222

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C+EVCP     +  + L  I  D CI CG C   CP +A     +   
Sbjct: 58  CQHCDEPPCMEVCPSTATGKRADGLVTIDYDICIGCGYCAISCPYEARYKVDKADF 113


>gi|295115164|emb|CBL36011.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [butyrate-producing bacterium SM4/1]
          Length = 209

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y VT+ CI CK   C   CP  C    +  +AI  + C+ CG C   CP  A++
Sbjct: 153 YFVTDKCIGCKL--CYSKCPQKCIDITQKPVAIEQEHCLHCGNCFEICPAGAVE 204


>gi|269139048|ref|YP_003295749.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984709|gb|ACY84538.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|304558980|gb|ADM41644.1| Electron transport complex protein RnfB [Edwardsiella tarda FL6-60]
          Length = 191

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        L  +  D+C  CG+C P CP   I+
Sbjct: 115 NCIGC--TKCIQSCPVDAIVGATRALHTVISDQCTGCGLCLPPCPTSCIQ 162



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 111 IDEANCIGCTKCIQSCPVDAI 131


>gi|258655376|ref|YP_003204532.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nakamurella multipartita DSM 44233]
 gi|258558601|gb|ACV81543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nakamurella
           multipartita DSM 44233]
          Length = 332

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + I  D C  CG C   CP   ++   +
Sbjct: 126 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVIQADVCNGCGTCVAGCPFGVVERRDD 181


>gi|222034187|emb|CAP76928.1| Protein aegA [Escherichia coli LF82]
 gi|312947052|gb|ADR27879.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|213022400|ref|ZP_03336847.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 217

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|71735100|ref|YP_273634.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555653|gb|AAZ34864.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 280

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 74  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 127



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+ + C  C    CV  CPVDC   
Sbjct: 103 MHTVIVDECTGCDL--CVAPCPVDCIEM 128


>gi|323960817|gb|EGB56438.1| glutamate synthase [Escherichia coli H489]
          Length = 639

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|307312542|ref|ZP_07592175.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|306907465|gb|EFN37969.1| glutamate synthase, small subunit [Escherichia coli W]
 gi|315061783|gb|ADT76110.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli W]
 gi|323377636|gb|ADX49904.1| glutamate synthase, small subunit [Escherichia coli KO11]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|306814455|ref|ZP_07448617.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
 gi|305851849|gb|EFM52301.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           NC101]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|269966518|ref|ZP_06180601.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 40B]
 gi|269828862|gb|EEZ83113.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 40B]
          Length = 255

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|218696094|ref|YP_002403761.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           55989]
 gi|218352826|emb|CAU98614.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli 55989]
 gi|324118191|gb|EGC12088.1| glutamate synthase [Escherichia coli E1167]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|110642640|ref|YP_670370.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli 536]
 gi|215487769|ref|YP_002330200.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218690594|ref|YP_002398806.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           ED1a]
 gi|110344232|gb|ABG70469.1| AegA protein [Escherichia coli 536]
 gi|215265841|emb|CAS10250.1| fused predicted oxidoreductase: FeS binding subunit
           /NAD/FAD-binding subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218428158|emb|CAR09073.2| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli ED1a]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|82777844|ref|YP_404193.1| putative oxidoreductase Fe-S binding subunit [Shigella dysenteriae
           Sd197]
 gi|81241992|gb|ABB62702.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|57640966|ref|YP_183444.1| putative ATPase RIL [Thermococcus kodakarensis KOD1]
 gi|57159290|dbj|BAD85220.1| predicted ATPase, RNase L inhibitor homolog [Thermococcus
          kodakarensis KOD1]
          Length = 594

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 10 DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 67

Query: 56 K-----PDTEPGLELWLKINSEYATQWPNITT 82
                 + E G      IN+    + P +  
Sbjct: 68 TIVNLPEELEEGCVHRYGINAFVLYRLPVVKE 99


>gi|15679840|ref|NP_276958.1| indolepyruvate oxidoreductase, alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6685555|sp|O27880|IORA_METTH RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|2622988|gb|AAB86318.1| indolepyruvate oxidoreductase, alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 618

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 1   MTYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  V  E C LC   +C+    CP     EGE  + I P +C  C VC   CP  AIKP+
Sbjct: 561 MA-VDGEKCDLCL--ECIRDLACPAMVTREGE--VFIDPLKCRGCSVCLQICPAGAIKPE 615


>gi|297526529|ref|YP_003668553.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Staphylothermus hellenicus DSM 12710]
 gi|297255445|gb|ADI31654.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Staphylothermus hellenicus DSM 12710]
          Length = 640

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 3   YVVTEN-CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y + ++ C  C    CV +  CP     +G     I P+ C  CG+C   CP +AI    
Sbjct: 572 YTILQDKCTGC--MVCVNLLGCPAIVVPKGSKKPVILPELCAGCGLCAQVCPFNAIV-LK 628

Query: 60  EPGLELWLK 68
           E G   WL+
Sbjct: 629 EKGSPNWLE 637


>gi|293410861|ref|ZP_06654437.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471329|gb|EFF13813.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|270158204|ref|ZP_06186861.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|289163539|ref|YP_003453677.1| Electron transport complex protein [Legionella longbeachae NSW150]
 gi|269990229|gb|EEZ96483.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|288856712|emb|CBJ10523.1| Electron transport complex protein [Legionella longbeachae NSW150]
          Length = 204

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            CI C  T C++ CPVD     G+   A+   EC  CG+C   CPVD I+          
Sbjct: 83  ECIGC--TKCIKACPVDAIIGSGKLMHAVMTHECTGCGLCVAPCPVDCIEMVESSAA--- 137

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
            + + + A    +    +       K    ++K +
Sbjct: 138 -EYDKDLARIRFHAKQSRLLREDHEKQQAYREKRQ 171



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           I   ECI C  C   CPVDAI
Sbjct: 78 VIREAECIGCTKCIKACPVDAI 99


>gi|254976914|ref|ZP_05273386.1| electron transport protein [Clostridium difficile QCD-66c26]
 gi|255094300|ref|ZP_05323778.1| electron transport protein [Clostridium difficile CIP 107932]
 gi|255102482|ref|ZP_05331459.1| electron transport protein [Clostridium difficile QCD-63q42]
 gi|255308387|ref|ZP_05352558.1| electron transport protein [Clostridium difficile ATCC 43255]
 gi|255316054|ref|ZP_05357637.1| electron transport protein [Clostridium difficile QCD-76w55]
 gi|255518711|ref|ZP_05386387.1| electron transport protein [Clostridium difficile QCD-97b34]
 gi|255651833|ref|ZP_05398735.1| electron transport protein [Clostridium difficile QCD-37x79]
 gi|260684859|ref|YP_003216144.1| electron transport protein [Clostridium difficile CD196]
 gi|260688517|ref|YP_003219651.1| electron transport protein [Clostridium difficile R20291]
 gi|306521620|ref|ZP_07407967.1| electron transport protein [Clostridium difficile QCD-32g58]
 gi|260211022|emb|CBA66342.1| electron transport protein [Clostridium difficile CD196]
 gi|260214534|emb|CBE07057.1| electron transport protein [Clostridium difficile R20291]
          Length = 183

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C+  CP     +  N ++++ ++CI C  C   CP  AI
Sbjct: 65  CRHCEDAPCLNSCPQKAIVKENNIMSVNEEKCIGCKTCLLACPFGAI 111


>gi|89895375|ref|YP_518862.1| iron-sulfur protein [Desulfitobacterium hafniense Y51]
 gi|89334823|dbj|BAE84418.1| iron-sulfur protein [Desulfitobacterium hafniense Y51]
          Length = 162

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV+VCP    Y+ E  + ++ + CI C +C   CP  +I   TE
Sbjct: 63  CRQCEDAPCVKVCPNGSLYQEEGLVKLNRETCIGCKLCARACPFGSITMTTE 114


>gi|809680|emb|CAA35547.1| hycB [Escherichia coli]
 gi|1093495|prf||2104213B hycB gene
          Length = 203

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|114321574|ref|YP_743257.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227968|gb|ABI57767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 248

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVD 53
            C+ C+   CV VCP        E    + I  D CI C  C   CP  
Sbjct: 57  PCMQCEDATCVTVCPTGATYKDAEAGGVVFIDWDRCIGCKYCIVACPYG 105


>gi|16130393|ref|NP_416963.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|89109273|ref|AP_003053.1| fused predicted FeS binding subunit and predicted NAD/FAD-binding
           subunit of oxidoreductase [Escherichia coli str. K-12
           substr. W3110]
 gi|157161927|ref|YP_001459245.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli HS]
 gi|170019248|ref|YP_001724202.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli ATCC
           8739]
 gi|170082077|ref|YP_001731397.1| fused oxidoreductase: FeS binding subunit; NAD/FAD-binding subunit
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188496164|ref|ZP_03003434.1| protein aegA [Escherichia coli 53638]
 gi|194437640|ref|ZP_03069736.1| protein aegA [Escherichia coli 101-1]
 gi|238901631|ref|YP_002927427.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli BW2952]
 gi|253772641|ref|YP_003035472.1| oxidoreductase Fe-S binding subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162442|ref|YP_003045550.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli B
           str. REL606]
 gi|256021847|ref|ZP_05435712.1| putative oxidoreductase Fe-S binding subunit [Escherichia sp.
           4_1_40B]
 gi|307139101|ref|ZP_07498457.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           H736]
 gi|331643082|ref|ZP_08344217.1| protein AegA [Escherichia coli H736]
 gi|2506464|sp|P37127|AEGA_ECOLI RecName: Full=Protein AegA
 gi|1788811|gb|AAC75521.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|85675416|dbj|BAA16342.2| fused predicted FeS binding subunit and predicted NAD/FAD-binding
           subunit of oxidoreductase [Escherichia coli str. K12
           substr. W3110]
 gi|157067607|gb|ABV06862.1| protein aegA [Escherichia coli HS]
 gi|169754176|gb|ACA76875.1| glutamate synthase, small subunit [Escherichia coli ATCC 8739]
 gi|169889912|gb|ACB03619.1| fused predicted oxidoreductase: FeS binding subunit;
           NAD/FAD-binding subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|188491363|gb|EDU66466.1| protein aegA [Escherichia coli 53638]
 gi|194423446|gb|EDX39437.1| protein aegA [Escherichia coli 101-1]
 gi|238861231|gb|ACR63229.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli BW2952]
 gi|242378067|emb|CAQ32838.1| putative oxidoreductase, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|253323685|gb|ACT28287.1| glutamate synthase, small subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974343|gb|ACT40014.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli B str. REL606]
 gi|253978510|gb|ACT44180.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli BL21(DE3)]
 gi|260448454|gb|ACX38876.1| glutamate synthase, small subunit [Escherichia coli DH1]
 gi|309702747|emb|CBJ02076.1| oxidoreductase [Escherichia coli ETEC H10407]
 gi|315137090|dbj|BAJ44249.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli DH1]
 gi|315615710|gb|EFU96342.1| protein aegA [Escherichia coli 3431]
 gi|323941277|gb|EGB37462.1| glutamate synthase [Escherichia coli E482]
 gi|323961260|gb|EGB56872.1| glutamate synthase [Escherichia coli H489]
 gi|323971014|gb|EGB66263.1| glutamate synthase [Escherichia coli TA007]
 gi|331039880|gb|EGI12100.1| protein AegA [Escherichia coli H736]
 gi|332344286|gb|AEE57620.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 659

 Score = 54.8 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|328474655|gb|EGF45460.1| tetrathionate reductase subunit B [Vibrio parahaemolyticus 10329]
          Length = 255

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|309776013|ref|ZP_07671005.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916295|gb|EFP62043.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 202

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + + C+ C    C+  CP  C   G+ ++ +  + C+ CG+C   CPV AI
Sbjct: 149 FQILDACVQCG--SCLRSCPQQCIETGQPYIIVQKN-CLHCGLCAEVCPVHAI 198


>gi|304314083|ref|YP_003849230.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302587542|gb|ADL57917.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 143

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C  +   C+ +CP D   E +  + I  D+CI CG+C   CP+ AI
Sbjct: 36 CMHCAPERAPCLNICPEDAIVEVDGAVVILEDKCIGCGLCRDACPIGAI 84


>gi|260901541|ref|ZP_05909936.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ4037]
 gi|308110900|gb|EFO48440.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ4037]
          Length = 255

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|225024698|ref|ZP_03713890.1| hypothetical protein EIKCOROL_01580 [Eikenella corrodens ATCC
          23834]
 gi|224942537|gb|EEG23746.1| hypothetical protein EIKCOROL_01580 [Eikenella corrodens ATCC
          23834]
          Length = 85

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I PD C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEIDPDLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D E   
Sbjct: 59 ILIDEEHPE 67


>gi|15832635|ref|NP_311408.1| polyferredoxin [Escherichia coli O157:H7 str. Sakai]
 gi|168748422|ref|ZP_02773444.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4113]
 gi|168756291|ref|ZP_02781298.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4401]
 gi|168761129|ref|ZP_02786136.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4501]
 gi|168768611|ref|ZP_02793618.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4486]
 gi|168773567|ref|ZP_02798574.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4196]
 gi|168778485|ref|ZP_02803492.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4076]
 gi|168787865|ref|ZP_02812872.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC869]
 gi|168798890|ref|ZP_02823897.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC508]
 gi|195936661|ref|ZP_03082043.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4024]
 gi|208809392|ref|ZP_03251729.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4206]
 gi|208812703|ref|ZP_03254032.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4045]
 gi|208821200|ref|ZP_03261520.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4042]
 gi|209398407|ref|YP_002271989.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4115]
 gi|217327417|ref|ZP_03443500.1| putative polyferredoxin [Escherichia coli O157:H7 str. TW14588]
 gi|261223049|ref|ZP_05937330.1| putative polyferredoxin [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259400|ref|ZP_05951933.1| putative polyferredoxin [Escherichia coli O157:H7 str. FRIK966]
 gi|13362851|dbj|BAB36804.1| putative polyferredoxin [Escherichia coli O157:H7 str. Sakai]
 gi|187770682|gb|EDU34526.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4196]
 gi|188017040|gb|EDU55162.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4113]
 gi|189003633|gb|EDU72619.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4076]
 gi|189356572|gb|EDU74991.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4401]
 gi|189362196|gb|EDU80615.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4486]
 gi|189368440|gb|EDU86856.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4501]
 gi|189372305|gb|EDU90721.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC869]
 gi|189378670|gb|EDU97086.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC508]
 gi|208729193|gb|EDZ78794.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4206]
 gi|208733980|gb|EDZ82667.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4045]
 gi|208741323|gb|EDZ89005.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4042]
 gi|209159807|gb|ACI37240.1| putative polyferredoxin [Escherichia coli O157:H7 str. EC4115]
 gi|217319784|gb|EEC28209.1| putative polyferredoxin [Escherichia coli O157:H7 str. TW14588]
 gi|320188852|gb|EFW63511.1| Putative polyferredoxin [Escherichia coli O157:H7 str. EC1212]
 gi|326340317|gb|EGD64121.1| Putative polyferredoxin [Escherichia coli O157:H7 str. 1125]
 gi|326345001|gb|EGD68745.1| Putative polyferredoxin [Escherichia coli O157:H7 str. 1044]
          Length = 284

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CIDC VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIDCAVCQFICPQEAIR 64


>gi|15668758|ref|NP_247557.1| iron-sulfer cluster binding protein [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2494450|sp|Q57998|Y578_METJA RecName: Full=Uncharacterized protein MJ0578
 gi|1591285|gb|AAB98569.1| iron-sulfer cluster binding protein [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 276

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y + ++CI C    C++VC  D   +      I+P  C  CG CE  C  DAI+P
Sbjct: 70  YEINDDCIRCG--KCLDVCQFDAIGD----FKINPILCEGCGACELICEFDAIEP 118


>gi|83950402|ref|ZP_00959135.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
          nubinhibens ISM]
 gi|83838301|gb|EAP77597.1| formate dehydrogenase, iron-sulfur subunit, putative [Roseovarius
          nubinhibens ISM]
          Length = 134

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 18 VEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          + VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 1  MAVCPVDCFYQTEEGVVLHSKDLCIGCGYCFYACPFGAPQY 41


>gi|331658614|ref|ZP_08359558.1| protein AegA [Escherichia coli TA206]
 gi|331054279|gb|EGI26306.1| protein AegA [Escherichia coli TA206]
          Length = 659

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|300941100|ref|ZP_07155612.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300454143|gb|EFK17636.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 203

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|281179530|dbj|BAI55860.1| putative oxidoreductase [Escherichia coli SE15]
          Length = 659

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 490

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +TY +    C  C  T C +VCPV+C    +     I   +CI CG C  +C  D+I
Sbjct: 433 LTYTINPAKCTGC--TLCTKVCPVECISGTKKQPHVIDASKCIKCGACYDKCKFDSI 487


>gi|153837801|ref|ZP_01990468.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ3810]
 gi|149748822|gb|EDM59661.1| tetrathionate reductase, subunit B [Vibrio parahaemolyticus AQ3810]
          Length = 255

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|219667563|ref|YP_002457998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537823|gb|ACL19562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C +VCP    Y+ E+ +  I   +CI C  C   CP +A
Sbjct: 58  CQHCDDAPCQKVCPTGATYKREDGIVLIDAQKCIGCKYCMVACPYNA 104


>gi|193068445|ref|ZP_03049408.1| protein aegA [Escherichia coli E110019]
 gi|260869155|ref|YP_003235557.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|293446820|ref|ZP_06663242.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|331669202|ref|ZP_08370050.1| protein AegA [Escherichia coli TA271]
 gi|331678448|ref|ZP_08379123.1| protein AegA [Escherichia coli H591]
 gi|192958397|gb|EDV88837.1| protein aegA [Escherichia coli E110019]
 gi|257765511|dbj|BAI37006.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O111:H- str. 11128]
 gi|291323650|gb|EFE63078.1| oxidoreductase Fe-S binding subunit [Escherichia coli B088]
 gi|323177415|gb|EFZ63003.1| protein aegA [Escherichia coli 1180]
 gi|331064396|gb|EGI36307.1| protein AegA [Escherichia coli TA271]
 gi|331074908|gb|EGI46228.1| protein AegA [Escherichia coli H591]
          Length = 659

 Score = 54.4 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|327401016|ref|YP_004341855.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Archaeoglobus veneficus SNP6]
 gi|327316524|gb|AEA47140.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus veneficus SNP6]
          Length = 621

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + VT++C LC        CP    Y       I    CI CGVC   CP  AIKP
Sbjct: 566 PFTVTDDCNLCMKCVTEFACP--ALYVINGKPVIDAALCIACGVCSRICPEKAIKP 619


>gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 645

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C + C V     E +    I   +CI CG C+  CP +AI 
Sbjct: 575 CISCG--ICAKACGVGAISGEKKKPFYIDRQKCIKCGACQARCPKEAIF 621



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP     E  +F  + P +CI CG+C   C V AI  + +   
Sbjct: 557 CPAGVCRELTDF-VVDPAKCISCGICAKACGVGAISGEKKKPF 598


>gi|318058600|ref|ZP_07977323.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces sp.
           SA3_actG]
 gi|318080109|ref|ZP_07987441.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces sp.
           SA3_actF]
          Length = 315

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+ 
Sbjct: 126 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIEQ 178


>gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
 gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
          Length = 299

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C   G            +  I+   CI CG+CE  CP  AI+
Sbjct: 64  ERCVACYL--CAAACPVSCISMGGAEREDGRRWATWFRINFARCIYCGLCEEACPTLAIQ 121


>gi|256017391|ref|ZP_05431256.1| putative oxidoreductase Fe-S binding subunit [Shigella sp. D9]
 gi|332278390|ref|ZP_08390803.1| FeS binding subunit/NAD/FAD-binding subunit [Shigella sp. D9]
 gi|332100742|gb|EGJ04088.1| FeS binding subunit/NAD/FAD-binding subunit [Shigella sp. D9]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|73541017|ref|YP_295537.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
 gi|72118430|gb|AAZ60693.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
          Length = 417

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C + CP+D     E    +  D C  C  C   CP  AI
Sbjct: 15 EICIRCN--TCEDTCPIDAITHDERNYVVKADVCNACNACLSPCPTGAI 61



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP+DAI  D  
Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDER 37


>gi|11499084|ref|NP_070318.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus DSM 4304]
 gi|6685558|sp|O28783|IORA_ARCFU RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|2649079|gb|AAB89760.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha (iorA)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 623

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TY VTE+C LC   +CV    CP          ++I    C+ C VC   CP  AIKP
Sbjct: 566 TYKVTEDCTLC--MECVNTFACP--ALIFDGEKVSIDQSLCVGCAVCAKICPNRAIKP 619


>gi|320581229|gb|EFW95450.1| NADH-quinone oxidoreductase chain I [Pichia angusta DL-1]
          Length = 212

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAEERADGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 167



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 111 ERCIACKLCEAICPAQAITIEAEERAD 137



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 152 CIYCGY--CQESCPVDAIVETPNIEY 175


>gi|296273536|ref|YP_003656167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097710|gb|ADG93660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 268

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  C++  CV VCP    F   +  + +  + C  CG C   CP D
Sbjct: 105 QLCNHCENPACVPVCPTGATFKREDGIVVVDNEICWGCGYCISACPYD 152


>gi|213418789|ref|ZP_03351855.1| putative anaerobic reductase component [Salmonella enterica
          subsp. enterica serovar Typhi str. E01-6750]
          Length = 116

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A + + 
Sbjct: 27 AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGAPQLNE 86

Query: 60 EPGL 63
          + G 
Sbjct: 87 QTGQ 90


>gi|187733026|ref|YP_001880432.1| iron-sulfur cluster-binding protein [Shigella boydii CDC 3083-94]
 gi|187430018|gb|ACD09292.1| iron-sulfur cluster-binding protein [Shigella boydii CDC 3083-94]
          Length = 239

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  L  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|78042641|ref|YP_359458.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994756|gb|ABB13655.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 203

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +   C+ C +  C+ VCPV   +   +  + I   +CI C +C   CP  A
Sbjct: 69  IPMPCMHCDNAPCIAVCPVKASYKRKDGIVVIDKYKCIGCRLCLKACPYQA 119


>gi|326796922|ref|YP_004314742.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinomonas mediterranea MMB-1]
 gi|326547686|gb|ADZ92906.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Marinomonas mediterranea MMB-1]
          Length = 83

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP +   +GE    I P +C +C        C   CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPECPNEAISQGEEIYVIDPAKCTECVGHYDEPQCVQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITT 82
          I     P  + +++   E   ++  +T 
Sbjct: 59 I-----PKDKDYVETEEELMEKYLVLTG 81


>gi|323188233|gb|EFZ73526.1| protein aegA [Escherichia coli RN587/1]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|331648121|ref|ZP_08349211.1| protein AegA [Escherichia coli M605]
 gi|331042981|gb|EGI15121.1| protein AegA [Escherichia coli M605]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|261253562|ref|ZP_05946135.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
 gi|260936953|gb|EEX92942.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
          Length = 194

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|302517468|ref|ZP_07269810.1| formate dehydrogenase, beta subunit [Streptomyces sp. SPB78]
 gi|302426363|gb|EFK98178.1| formate dehydrogenase, beta subunit [Streptomyces sp. SPB78]
          Length = 315

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+ 
Sbjct: 126 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQQDICNGCGYCVSACPYGVIEQ 178


>gi|150389143|ref|YP_001319192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149949005|gb|ABR47533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 177

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKP 57
          Y V+ +C  C+   CVE CPV    +G++   +    ++CI C  C   CP  A K 
Sbjct: 43 YHVSMSCNHCEIPVCVENCPVGAMNKGKDNGVVDIVKEKCIGCQRCVKTCPYGAPKY 99


>gi|323169096|gb|EFZ54773.1| protein aegA [Shigella sonnei 53G]
          Length = 654

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 51 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 95


>gi|320657144|gb|EFX24953.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|319902323|ref|YP_004162051.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417354|gb|ADV44465.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
          Length = 320

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP D I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQDTI 265



 Score = 40.9 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C     +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVAACQFGAIHMNPETGLPEVDEAKCTACGACAKACPKNIIE 189


>gi|317489694|ref|ZP_07948198.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316911288|gb|EFV32893.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 216

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 60  SYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118


>gi|331673924|ref|ZP_08374687.1| protein AegA [Escherichia coli TA280]
 gi|331069197|gb|EGI40589.1| protein AegA [Escherichia coli TA280]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|331664022|ref|ZP_08364932.1| protein AegA [Escherichia coli TA143]
 gi|331059821|gb|EGI31798.1| protein AegA [Escherichia coli TA143]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|307250591|ref|ZP_07532533.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857407|gb|EFM89521.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 345

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV  CPV      E    +   PD C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVEPNCVTACPVQALTKDEKTGIVNYDPDICTGCRYCMVACPFNVPKYD 163


>gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Synergistetes bacterium SGP1]
          Length = 628

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C  T C   CPV            I   +CI CG C   CP  AI+ 
Sbjct: 579 CRGC--TKCARSCPVGAISGVVKAPHLIDDGKCIRCGACMENCPFGAIRE 626



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I   +C  C  C   CPV AI
Sbjct: 561 CPAK-VCQKMKRFEIDAAQCRGCTKCARSCPVGAI 594


>gi|260845099|ref|YP_003222877.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O103:H2 str. 12009]
 gi|257760246|dbj|BAI31743.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O103:H2 str. 12009]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|224588326|gb|ACN58950.1| iron-sulfur cluster-binding protein [uncultured bacterium BLR10]
          Length = 245

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--KPD 58
            Y+    CI C  T C++ CPVD        +  + PD C  C +C   CPVD I   P 
Sbjct: 80  AYIDESLCIGC--TLCIQACPVDAIIGAAKLMHTVVPDLCTGCDLCVNPCPVDCIVMHPV 137

Query: 59  TE-PGLELWLKINSEYATQ 76
           TE  G   W + +++ A +
Sbjct: 138 TETTGWNAWRQADADAARE 156



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PV+          I    CI C +C   CPVDAI
Sbjct: 69  PVNGLERPRAVAYIDESLCIGCTLCIQACPVDAI 102


>gi|505330|gb|AAB46944.1| Fe-S center and glutamate synthase (GltD) protein [Escherichia
           coli]
          Length = 652

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|82544916|ref|YP_408863.1| oxidoreductase Fe-S binding subunit [Shigella boydii Sb227]
 gi|81246327|gb|ABB67035.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
 gi|323944683|gb|EGB40750.1| glutamate synthase [Escherichia coli H120]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|52424976|ref|YP_088113.1| electron transport complex protein RnfB [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307028|gb|AAU37528.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 196

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        L  + PD C  C +C   CP D IK
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIIGTNKSLHTVIPDLCTGCELCVAPCPTDCIK 159



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
                 IH D CI C  C   CPVDAI
Sbjct: 102 TPKVAFIHEDMCIGCTKCIQACPVDAI 128


>gi|157155091|ref|YP_001463790.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           E24377A]
 gi|191167628|ref|ZP_03029438.1| protein aegA [Escherichia coli B7A]
 gi|193064770|ref|ZP_03045848.1| protein aegA [Escherichia coli E22]
 gi|194427362|ref|ZP_03059912.1| protein aegA [Escherichia coli B171]
 gi|209919940|ref|YP_002294024.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SE11]
 gi|218554991|ref|YP_002387904.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           IAI1]
 gi|157077121|gb|ABV16829.1| protein aegA [Escherichia coli E24377A]
 gi|190902308|gb|EDV62047.1| protein aegA [Escherichia coli B7A]
 gi|192927653|gb|EDV82269.1| protein aegA [Escherichia coli E22]
 gi|194414683|gb|EDX30955.1| protein aegA [Escherichia coli B171]
 gi|209913199|dbj|BAG78273.1| putative oxidoreductase [Escherichia coli SE11]
 gi|218361759|emb|CAQ99356.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli IAI1]
 gi|323159315|gb|EFZ45300.1| protein aegA [Escherichia coli E128010]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|323492347|ref|ZP_08097500.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
 gi|323313394|gb|EGA66505.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
          Length = 194

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|331684116|ref|ZP_08384712.1| protein AegA [Escherichia coli H299]
 gi|331079068|gb|EGI50270.1| protein AegA [Escherichia coli H299]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|304411591|ref|ZP_07393204.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307306633|ref|ZP_07586375.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304350118|gb|EFM14523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910601|gb|EFN41030.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 188

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ + +IH ++C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPY 104


>gi|284922413|emb|CBG35500.1| oxidoreductase [Escherichia coli 042]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|282881566|ref|ZP_06290235.1| 4Fe-4S binding domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304552|gb|EFA96643.1| 4Fe-4S binding domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 400

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPV 52
          C  C    C   CP  C    E+ +      I  + CI+C  CE  CP+
Sbjct: 10 CTGCG--ACAYPCPKQCITMREDMIGQIYPVIDNNICIECHACEKICPI 56


>gi|269216153|ref|ZP_06160007.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
          ATCC 700122]
 gi|269130412|gb|EEZ61490.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
          ATCC 700122]
          Length = 190

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           Y V+  C  C    C+EVCP    ++    L  +    CI CG C   CP  A   D
Sbjct: 40 AYHVSLACNHCDQPACMEVCPTGAMHKDGLGLVQVDHMRCIGCGYCTIACPYHAPSID 97


>gi|288931804|ref|YP_003435864.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894052|gb|ADC65589.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 251

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +Y V + C  C    CV+VCPV   Y+ ++ +  +    CI C  C   CP  A
Sbjct: 110 SYFVPKLCNHCDRPPCVQVCPVGATYKTKDGVILVDEKYCIGCRYCIQACPYGA 163


>gi|218705966|ref|YP_002413485.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UMN026]
 gi|293405903|ref|ZP_06649895.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298381651|ref|ZP_06991250.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
 gi|218433063|emb|CAR13958.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli UMN026]
 gi|291428111|gb|EFF01138.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1412]
 gi|298279093|gb|EFI20607.1| oxidoreductase Fe-S binding subunit [Escherichia coli FVEC1302]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|218700924|ref|YP_002408553.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218370910|emb|CAR18729.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli IAI39]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|170681460|ref|YP_001744650.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SMS-3-5]
 gi|170519178|gb|ACB17356.1| protein aegA [Escherichia coli SMS-3-5]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|149190374|ref|ZP_01868646.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
 gi|148835753|gb|EDL52718.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
          Length = 193

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|13022069|gb|AAK11625.1|AF331719_1 [Fe] hydrogenase large subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 421

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C E CP    +   G      H + CI+CG C   CPV AI       ++
Sbjct: 33  EKCIGCD--TCQEYCPTGAIFGDTGSAHSIPHEEICINCGQCLTHCPVGAIY-----EVQ 85

Query: 65  LWLKINSEYATQWPNITTKKESLP 88
            W+    E + +  +   K  ++P
Sbjct: 86  SWV---RELSEKIKDPEIKVIAMP 106



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          F+ I P++CI C  C+  CP  AI  DT
Sbjct: 27 FIQIDPEKCIGCDTCQEYCPTGAIFGDT 54


>gi|15802990|ref|NP_289020.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15832584|ref|NP_311357.1| oxidoreductase Fe-S binding subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|168748482|ref|ZP_02773504.1| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|168756232|ref|ZP_02781239.1| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|168761069|ref|ZP_02786076.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|168768552|ref|ZP_02793559.1| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|168773627|ref|ZP_02798634.1| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|168778426|ref|ZP_02803433.1| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|168787806|ref|ZP_02812813.1| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|168798831|ref|ZP_02823838.1| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|195936609|ref|ZP_03081991.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806285|ref|ZP_03248622.1| protein aegA [Escherichia coli O157:H7 str. EC4206]
 gi|208813183|ref|ZP_03254512.1| protein aegA [Escherichia coli O157:H7 str. EC4045]
 gi|208819860|ref|ZP_03260180.1| protein aegA [Escherichia coli O157:H7 str. EC4042]
 gi|209396864|ref|YP_002271936.1| protein aegA [Escherichia coli O157:H7 str. EC4115]
 gi|217327657|ref|ZP_03443740.1| protein aegA [Escherichia coli O157:H7 str. TW14588]
 gi|254794412|ref|YP_003079249.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223100|ref|ZP_05937381.1| fused predicted oxidoreductase: FeS binding subunit, NAD
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259348|ref|ZP_05951881.1| fused predicted oxidoreductase: FeS binding subunit, NAD
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291283687|ref|YP_003500505.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|331653887|ref|ZP_08354888.1| protein AegA [Escherichia coli M718]
 gi|12516846|gb|AAG57577.1|AE005476_2 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13362800|dbj|BAB36753.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|187770732|gb|EDU34576.1| protein aegA [Escherichia coli O157:H7 str. EC4196]
 gi|188017016|gb|EDU55138.1| protein aegA [Escherichia coli O157:H7 str. EC4113]
 gi|189003194|gb|EDU72180.1| protein aegA [Escherichia coli O157:H7 str. EC4076]
 gi|189356550|gb|EDU74969.1| protein aegA [Escherichia coli O157:H7 str. EC4401]
 gi|189362302|gb|EDU80721.1| protein aegA [Escherichia coli O157:H7 str. EC4486]
 gi|189368496|gb|EDU86912.1| protein aegA [Escherichia coli O157:H7 str. EC4501]
 gi|189372387|gb|EDU90803.1| protein aegA [Escherichia coli O157:H7 str. EC869]
 gi|189378607|gb|EDU97023.1| protein aegA [Escherichia coli O157:H7 str. EC508]
 gi|208726086|gb|EDZ75687.1| protein aegA [Escherichia coli O157:H7 str. EC4206]
 gi|208734460|gb|EDZ83147.1| protein aegA [Escherichia coli O157:H7 str. EC4045]
 gi|208739983|gb|EDZ87665.1| protein aegA [Escherichia coli O157:H7 str. EC4042]
 gi|209158264|gb|ACI35697.1| protein aegA [Escherichia coli O157:H7 str. EC4115]
 gi|209763798|gb|ACI80211.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763800|gb|ACI80212.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763802|gb|ACI80213.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763804|gb|ACI80214.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209763806|gb|ACI80215.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|217320024|gb|EEC28449.1| protein aegA [Escherichia coli O157:H7 str. TW14588]
 gi|254593812|gb|ACT73173.1| fused predicted oxidoreductase: FeS binding subunit, NAD
           [Escherichia coli O157:H7 str. TW14359]
 gi|290763560|gb|ADD57521.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|320188799|gb|EFW63458.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640971|gb|EFX10455.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320646253|gb|EFX15180.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651759|gb|EFX20139.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320662903|gb|EFX30231.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667790|gb|EFX34701.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340262|gb|EGD64066.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1125]
 gi|326344947|gb|EGD68691.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O157:H7 str. 1044]
 gi|331048736|gb|EGI20812.1| protein AegA [Escherichia coli M718]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|148260117|ref|YP_001234244.1| NADH-quinone oxidoreductase, chain I [Acidiphilium cryptum JF-5]
 gi|146401798|gb|ABQ30325.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
          Length = 170

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EG---ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        EG     F  I+   CI CG CE  CP  AI+ 
Sbjct: 49  ERCVSCYL--CAVACPVDCISLQKTEAEGRWYPEFFRINFSRCIFCGFCEEACPTYAIQL 106

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLP 88
             +  +  + + N  Y  +   I+   +   
Sbjct: 107 TPDFEMSEYDRQNLVYEKEHLLISGTGKYPD 137


>gi|150391071|ref|YP_001321120.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950933|gb|ABR49461.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 604

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCF--YEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           YV  + CI C    C+   CP      YEG   L  +I  D C+ C VC   CPV+AIK
Sbjct: 538 YVDPKICISC--RACIRTNCPPLRMIEYEGIEKLKSSIDKDMCVGCSVCAQVCPVNAIK 594


>gi|330446484|ref|ZP_08310136.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490675|dbj|GAA04633.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 194

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVSPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +  P    W ++N 
Sbjct: 165 EETPDNWKW-QLNR 177


>gi|269967076|ref|ZP_06181144.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           alginolyticus 40B]
 gi|269828335|gb|EEZ82601.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           alginolyticus 40B]
          Length = 249

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 164


>gi|260856560|ref|YP_003230451.1| fused putative oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|257755209|dbj|BAI26711.1| fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding
           subunit [Escherichia coli O26:H11 str. 11368]
 gi|323156067|gb|EFZ42226.1| protein aegA [Escherichia coli EPECa14]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
          Length = 596

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C + CP +           I  D+CI CG C  +CP DAI 
Sbjct: 546 DKCKGCG--ICAKNCPTNAISGKVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I PD+C  CG+C   CP +AI
Sbjct: 530 CPAG-VCQALLKFRIDPDKCKGCGICAKNCPTNAI 563


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E CI C    C   CP      G+  +  I P++CI CG C   C  DA+
Sbjct: 544 EKCIGCD--MCARGCPASAISGGKKEIHAIDPEKCIACGSCREACKFDAV 591



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     E   F AI P++CI C +C   CP  AI
Sbjct: 528 CPAGVCKELTRF-AIQPEKCIGCDMCARGCPASAI 561


>gi|123442265|ref|YP_001006246.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089226|emb|CAL12072.1| putative iron-sulfur protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 207

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|78042697|ref|YP_360602.1| ferredoxin [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994812|gb|ABB13711.1| ferredoxin [Carboxydothermus hydrogenoformans Z-2901]
          Length = 54

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +TE C+ C    C++ CP +   EG+  +    D C +CG C   CPV AI  +
Sbjct: 1  MAYRITEECLACG--TCMDSCPHNAIVEGD--IYKITDACQNCGTCAEACPVGAIVEE 54


>gi|83590042|ref|YP_430051.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
            39073]
 gi|83572956|gb|ABC19508.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
            thermoacetica ATCC 39073]
          Length = 1487

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 4    VVTEN-CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
            VV EN C  C    CV VCP +     E N   I+  +C+ CG C  ECP  AI+
Sbjct: 1415 VVDENKCAACL--TCVRVCPFNVPRINERNVAEINAVQCMGCGTCAGECPAKAIQ 1467



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN---ITT 82
             E   ++ I   EC  CG CE  CPV +I  +    +     I+  +    PN   IT 
Sbjct: 102 IREKPRYVNI--QECTACGDCEQACPV-SIPNEYNQEMGTRKAIHKMFPQAVPNKYLITK 158

Query: 83  KKESL 87
           +    
Sbjct: 159 RGTPP 163


>gi|238799029|ref|ZP_04642489.1| Hydrogenase-2 operon protein hybA [Yersinia mollaretii ATCC 43969]
 gi|238717126|gb|EEQ08982.1| Hydrogenase-2 operon protein hybA [Yersinia mollaretii ATCC 43969]
          Length = 346

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   P+ C  C  C   CP +  K D +
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPNVCTGCRYCMVGCPFNVPKYDYD 170


>gi|93005191|ref|YP_579628.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
 gi|92392869|gb|ABE74144.1| 4Fe-4S ferredoxin, iron-sulfur binding [Psychrobacter
          cryohalolentis K5]
          Length = 82

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +   EG++   I PD C +C        C   CPVD 
Sbjct: 1  MALLITDECINCDV--CEPACPNEAISEGDDIYVIDPDLCTECVGHFDEPQCVVICPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPHD 62


>gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
 gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
          Length = 298

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV VCP        N + +   +C+ C  C   CP DA+  + E
Sbjct: 53  DKCIHC--QQCVHVCPHGALTHQNNRILVDAKKCVGCLTCVHACPQDALTHEGE 104


>gi|317154870|ref|YP_004122918.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945121|gb|ADU64172.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 254

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            C+ C +  CV  CP    Y+      + I    CI CG C P CP  A
Sbjct: 61  ACMHCDNPTCVAACPTGATYKDPETGEVVIDDGLCIGCGNCIPACPYHA 109



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          + I   +CIDC  C   C V       E     W+K
Sbjct: 7  MVIDAAKCIDCKACVASCKVA--NHTPEGQWRNWIK 40


>gi|213616092|ref|ZP_03371918.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 203

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 626

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YVV E  C  C    C + CP +  + E      I  ++CI CG+C  +C   AI+
Sbjct: 571 YVVNEQLCKGCGL--CAKSCPQNAIFGERGKPYKIDQEKCIKCGLCVQKCRFKAIE 624



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 20  VCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VCP   C         ++   C  CG+C   CP +AI  +
Sbjct: 559 VCPSGTCVSF--KKYVVNEQLCKGCGLCAKSCPQNAIFGE 596


>gi|71064903|ref|YP_263630.1| putative 4Fe-4S ferredoxin [Psychrobacter arcticus 273-4]
 gi|71037888|gb|AAZ18196.1| putative 4Fe-4S ferredoxin [Psychrobacter arcticus 273-4]
          Length = 82

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +   EG++   I PD C +C        C   CPVD 
Sbjct: 1  MALLITDECINCDV--CEPACPNEAISEGDDIYVIDPDLCTECVGHFDEPQCVVICPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTK 83
          I     P     ++  S+  +++  IT K
Sbjct: 59 I-----PHDPNHVETESDLMSKYKRITGK 82


>gi|15899490|ref|NP_344095.1| ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus P2]
 gi|284174261|ref|ZP_06388230.1| ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus
          98/2]
 gi|13816112|gb|AAK42885.1| Ferredoxin like protein (zfx-like1) [Sulfolobus solfataricus P2]
 gi|261601262|gb|ACX90865.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          solfataricus 98/2]
          Length = 89

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   C +VCP   +    +  + +H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIVVHYERCLECGAALVACPYGAIKFHFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|323184480|gb|EFZ69855.1| protein aegA [Escherichia coli 1357]
          Length = 654

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 51 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 95


>gi|301023818|ref|ZP_07187553.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
          196-1]
 gi|312973299|ref|ZP_07787471.1| protein aegA [Escherichia coli 1827-70]
 gi|299880691|gb|EFI88902.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
          196-1]
 gi|310331894|gb|EFP99129.1| protein aegA [Escherichia coli 1827-70]
          Length = 654

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 51 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 95


>gi|293415730|ref|ZP_06658373.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
 gi|291433378|gb|EFF06357.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|237810768|ref|YP_002895219.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|251767337|ref|ZP_02266850.2| ferredoxin [Burkholderia mallei PRL-20]
 gi|237505466|gb|ACQ97784.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|243063120|gb|EES45306.1| ferredoxin [Burkholderia mallei PRL-20]
          Length = 125

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 38 MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 95

Query: 55 IKPD 58
          I  D
Sbjct: 96 IPQD 99


>gi|190150652|ref|YP_001969177.1| hydrogenase-2 operon protein HybA precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307246252|ref|ZP_07528333.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255236|ref|ZP_07537051.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259670|ref|ZP_07541394.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307264000|ref|ZP_07545601.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915783|gb|ACE62035.1| hydrogenase-2 operon protein HybA precursor [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306852861|gb|EFM85085.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861785|gb|EFM93764.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866315|gb|EFM98179.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306870689|gb|EFN02432.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 345

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV  CPV      E    +   PD C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVEPNCVTACPVQALTKDEKTGIVNYDPDICTGCRYCMVACPFNVPKYD 163


>gi|168238216|ref|ZP_02663274.1| glutamate synthase, small subunit subfamily protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194737239|ref|YP_002115541.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194712741|gb|ACF91962.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288936|gb|EDY28309.1| glutamate synthase, small subunit subfamily protein [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 653

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        N + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINNSVQVNAQKCIGCKSCVVACPFG 100


>gi|52549383|gb|AAU83232.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27A8]
          Length = 642

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C E+C VD          I  D+C+ CG C   CP +A   + E G  +W
Sbjct: 519 EKCNGCG--RCAELCRVDAISIVLGKAVIDKDKCVTCGWCIRGCPSEA-AIEKERGYAMW 575

Query: 67  LKIN 70
           +  N
Sbjct: 576 IGAN 579



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C   DCV     D    G+    I  ++C  CG C   C VDAI
Sbjct: 493 GC-ANDCVRAKRNDVGLIGQVRPEIDNEKCNGCGRCAELCRVDAI 536



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 14/69 (20%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKP-DTEPGLELWLKINSEYA-------------TQWPN 79
           +    C  CG C   CP D I+  +  P L+     N + A                PN
Sbjct: 14 VVDAGLCTFCGACAAVCPNDRIEFREDGPALKEECPRNGQGACKDVCQRVVTFASKIGPN 73

Query: 80 ITTKKESLP 88
          I   K   P
Sbjct: 74 IFGFKAKPP 82


>gi|322831881|ref|YP_004211908.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rahnella sp. Y9602]
 gi|321167082|gb|ADW72781.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rahnella sp. Y9602]
          Length = 209

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C+   C +VCPV+      N + ++   C+ C +C   CP  AI       L++ + 
Sbjct: 57  CHQCEDAPCAQVCPVNAITRENNAIHLNESLCVSCKLCGLACPFGAITFSGSTPLDMPVD 116

Query: 69  INSEYATQWPNITTKKES 86
            N+  A   P        
Sbjct: 117 CNTSKALPAPRPPRAISP 134


>gi|269140235|ref|YP_003296936.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Edwardsiella tarda EIB202]
 gi|267985896|gb|ACY85725.1| hydrogenase-3, iron-sulfur subunit (part of FHL complex)
          [Edwardsiella tarda EIB202]
 gi|304560065|gb|ADM42729.1| Formate hydrogenlyase subunit 2 [Edwardsiella tarda FL6-60]
          Length = 204

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI
Sbjct: 49 QMCHHCEDAPCALVCPVNAITRQDGAIQLNESLCVGCKLCGIACPFGAI 97


>gi|256810171|ref|YP_003127540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256793371|gb|ACV24040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 151

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C+ C++  C E+CPVD  Y  E    +  + CI CG+C   CP+ AI    +   +
Sbjct: 42 CMQCENAPCKEICPVDAIYLKEGIPIVEKERCIACGMCAIACPIGAIFIKDKVAHK 97


>gi|239617512|ref|YP_002940834.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
 gi|239506343|gb|ACR79830.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
          Length = 287

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + CI C    C   C  D    G N  ++ P  C  CG C   CP++AI  +  
Sbjct: 63  INDTCIACG--ICERTCRFDAIRPG-NPYSVDPYACEGCGACVLTCPINAISLNDN 115



 Score = 40.5 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          G     I+ D CI CG+CE  C  DAI+P     ++ +
Sbjct: 57 GGKKAEIN-DTCIACGICERTCRFDAIRPGNPYSVDPY 93


>gi|149191659|ref|ZP_01869902.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio shilonii
           AK1]
 gi|148834500|gb|EDL51494.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio shilonii
           AK1]
          Length = 204

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  +  C  C    C +VCP    ++ E+ F+ +    CI C  C   CP  A +   E
Sbjct: 59  AYYTSIACNHCDEPACAKVCPSGAMHKREDGFVVVDEKVCIGCKHCANACPYGAPQYSKE 118

Query: 61  PGL 63
            G 
Sbjct: 119 KGH 121


>gi|220929030|ref|YP_002505939.1| electron transfer flavoprotein subunit alpha [Clostridium
          cellulolyticum H10]
 gi|219999358|gb|ACL75959.1| Electron transfer flavoprotein alpha subunit [Clostridium
          cellulolyticum H10]
          Length = 399

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          ++++ C+ C    C+ VCP +     +N + I  + C  CG+C P+C   AI  +     
Sbjct: 6  ILSDKCVKCLQ--CINVCPCNAIKNDKNVVYID-NTCTLCGICIPKCSFSAISYNENFTK 62

Query: 64 ELW 66
            +
Sbjct: 63 SKF 65



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPD 58
          L I  D+C+ C  C   CP +AIK D
Sbjct: 4  LQILSDKCVKCLQCINVCPCNAIKND 29


>gi|90579149|ref|ZP_01234959.1| electron transport complex protein RnfB [Vibrio angustum S14]
 gi|90439982|gb|EAS65163.1| electron transport complex protein RnfB [Vibrio angustum S14]
          Length = 194

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKSMHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  -DTEPGLEL 65
            +T    + 
Sbjct: 165 KETPDNWKW 173


>gi|78355128|ref|YP_386577.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217533|gb|ABB36882.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 421

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C E CP    +   G      H + CI+CG C   CPV AI       ++
Sbjct: 33  EKCIGCD--TCQEYCPTGAIFGDTGSAHSIPHEEICINCGQCLTHCPVGAIY-----EVQ 85

Query: 65  LWLKINSEYATQWPNITTKKESLP 88
            W+    E + +  +   K  ++P
Sbjct: 86  SWV---RELSEKIKDPEIKVIAMP 106



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          F+ I P++CI C  C+  CP  AI  DT
Sbjct: 27 FIQIDPEKCIGCDTCQEYCPTGAIFGDT 54


>gi|15803044|ref|NP_289074.1| putative dimethyl sulfoxide reductase subunit B [Escherichia coli
          O157:H7 EDL933]
 gi|12516915|gb|AAG57631.1|AE005481_7 putative dimethyl sulfoxide reductase subunit B [Escherichia coli
          O157:H7 str. EDL933]
          Length = 145

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y ++ +C  C    C + CP    +   G+  + ++ D+C+ CG C   CP  A + + 
Sbjct: 7  AYTLSVSCNHCADPICTKNCPTMAMHKRPGDGIVRVNTDKCVGCGYCAWSCPYGAPQMNE 66

Query: 60 EPG 62
          + G
Sbjct: 67 QTG 69


>gi|56476992|ref|YP_158581.1| benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1]
 gi|56313035|emb|CAI07680.1| Benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1]
          Length = 416

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 30/93 (32%), Gaps = 22/93 (23%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E CI C    C E CP+D          ++ D C  C  C P CP  AI           
Sbjct: 18 EICIRCN--TCEETCPIDAITHDNLNYVVNFDICNGCLACVPPCPTGAI----------- 64

Query: 67 LKINSEYATQWPNITTKKE-SLPSAAKMDGVKQ 98
                    W N+   K  SL    K D +  
Sbjct: 65 --------DSWRNVERAKPYSLEEQFKWDVLPD 89


>gi|70991122|ref|XP_750410.1| NADH-quinone oxidoreductase, 23 kDa subunit [Aspergillus fumigatus
           Af293]
 gi|66848042|gb|EAL88372.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159130884|gb|EDP55997.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 228

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 127 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 184

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
             +          N+EYAT+     +  K++ L +  K +
Sbjct: 185 ETS----------NAEYATETREELLYNKEKLLANGDKWE 214


>gi|302389092|ref|YP_003824913.1| aldo/keto reductase [Thermosediminibacter oceani DSM 16646]
 gi|302199720|gb|ADL07290.1| aldo/keto reductase [Thermosediminibacter oceani DSM 16646]
          Length = 318

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV   C  CK   C+  CP     F E  N   I+ ++C+ CG C   CP  AI+
Sbjct: 264 VVDSLCKGCK--TCLSACPNYAMEFAEERNKAYINREKCLTCGYCTASCPEFAIR 316


>gi|288561161|ref|YP_003424647.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
 gi|288543871|gb|ADC47755.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
          Length = 410

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            + CI C    CV+ CP D      +     P+ C  CG+C   CPVDAI  D E G   
Sbjct: 211 ADACIGCN--SCVDACPGDFISPKSDLTVALPEACAACGLCVNVCPVDAIDLDVEYGASK 268

Query: 66  W 66
           +
Sbjct: 269 F 269



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++C  C    CV  CPVD          + +  D+CI CGVC   CP +AI 
Sbjct: 141 DDCKGCGV--CVAECPVDAITLSAYGEPIEVDEDKCIQCGVCSQSCPWNAIF 190



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 13/68 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----------FLAIHPDECIDCGVCEPECPV 52
           V  + CI C    C + CP +  +   N              +  D CI C  C   CP 
Sbjct: 169 VDEDKCIQCGV--CSQSCPWNAIFIAGNAKPAKRSKVMKSFTLDADACIGCNSCVDACPG 226

Query: 53  DAIKPDTE 60
           D I P ++
Sbjct: 227 DFISPKSD 234



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
           +  + D CI CG CE  CP  AI+
Sbjct: 1  MIVFNEDSCIKCGACEGVCPTAAIE 25



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 14/57 (24%)

Query: 9   CILCKHTDCVEVCPVDCF--------YEGE----NFLAIHPDECIDCGVCEPECPVD 53
           C+ C    C  VCP D           +GE    + +  +P +C +CG C   CP D
Sbjct: 322 CVRCG--ACANVCPNDALQLDYVDKEIDGETVMRDRIIFNPSKCDECGECIDACPYD 376


>gi|257790388|ref|YP_003180994.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488809|ref|ZP_07947342.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|257474285|gb|ACV54605.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912114|gb|EFV33690.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 201

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C++  CV VCP       + +  + I  ++CI C  C   CP  A
Sbjct: 57  CMMCENPPCVAVCPQGATTIRDEDGIVVIDKEKCIGCKSCMEACPYGA 104


>gi|298529028|ref|ZP_07016431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510464|gb|EFI34367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 670

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V TE C  C    CV +CP D       +      I    C  CGVC   CP  AI    
Sbjct: 598 VHTEKCSGCG--ICVPLCPYDAITMKMVDDHPRAEIDMTACKGCGVCTTACPSAAIVLHG 655

Query: 60  EPGLELWLKINS 71
               +++ +I +
Sbjct: 656 YEEEQIYAQIEA 667


>gi|254251376|ref|ZP_04944694.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa
          AUO158]
 gi|124893985|gb|EAY67865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Burkholderia dolosa
          AUO158]
          Length = 88

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|152999082|ref|YP_001364763.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|160873678|ref|YP_001552994.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971766|ref|YP_002356517.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|151363700|gb|ABS06700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
 gi|160859200|gb|ABX47734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496901|gb|ACK45094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|315265908|gb|ADT92761.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 188

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ + +IH ++C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPY 104



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 14/74 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----------VCEPECPVDAI 55
           TE C+ C +  CV  CP    +      A   D+C  C            C   CP DA+
Sbjct: 89  TEKCVGCMY--CVAACPYKVRFMNPETKA--ADKCNFCKDSRLARGEEPACVTVCPTDAL 144

Query: 56  KPDTEPGLELWLKI 69
                   +  + I
Sbjct: 145 VFGDANDPQSDVAI 158


>gi|28199470|ref|NP_779784.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|182682201|ref|YP_001830361.1| ferredoxin [Xylella fastidiosa M23]
 gi|28057585|gb|AAO29433.1| ferredoxin II [Xylella fastidiosa Temecula1]
 gi|182632311|gb|ACB93087.1| electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa M23]
 gi|307578471|gb|ADN62440.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 139

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I+
Sbjct: 82  AWIVEADCIGC--TKCIQACPVDAIIGGAKHMHTVIAALCTGCELCVPACPVDCIE 135


>gi|83310341|ref|YP_420605.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82945182|dbj|BAE50046.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 217

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C +VCP        +  + I  D CI CG C   CP  A
Sbjct: 58  CMHCDEPPCRDVCPTTATTKRADGMVMIDYDICIGCGYCIVACPYQA 104


>gi|32034180|ref|ZP_00134402.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208796|ref|YP_001054021.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae L20]
 gi|165976757|ref|YP_001652350.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|303250582|ref|ZP_07336779.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303253088|ref|ZP_07339238.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307248365|ref|ZP_07530388.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252972|ref|ZP_07534860.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307257398|ref|ZP_07539168.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261818|ref|ZP_07543483.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|126097588|gb|ABN74416.1| hydrogenase-2 operon protein HybA precursor [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876858|gb|ABY69906.1| hydrogenase-2 operon protein hybA precursor [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302648073|gb|EFL78279.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302650570|gb|EFL80729.1| hydrogenase 2 protein HybA [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306855103|gb|EFM87283.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306859610|gb|EFM91635.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306864248|gb|EFM96161.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306868482|gb|EFN00294.1| Hydrogenase-2 operon protein hybA [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 345

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV  CPV      E    +   PD C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVEPNCVTACPVQALTKDEKTGIVNYDPDICTGCRYCMVACPFNVPKYD 163


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++  E C  C    C + CPV+    E +    I  D+CI CG C   C   A++
Sbjct: 573 PWINAEKCKGCG--KCAKKCPVEAISGELKQPHVIDQDKCIKCGACLQSCKFGAVE 626



 Score = 41.7 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I+ ++C  CG C  +CPV+AI  + +   
Sbjct: 575 INAEKCKGCGKCAKKCPVEAISGELKQPH 603


>gi|269963964|ref|ZP_06178273.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           harveyi 1DA3]
 gi|269831307|gb|EEZ85457.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           harveyi 1DA3]
          Length = 249

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 164


>gi|256810428|ref|YP_003127797.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
 gi|256793628|gb|ACV24297.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
          Length = 247

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C LC    C++ CP     + + F+ I   +C+ CG C+  CP +AI    E  + +  K
Sbjct: 159 CKLCL--KCIDACPNGAIIKRDGFVEISIHKCLGCGNCKKICPYNAIVEGKEIKMRVR-K 215

Query: 69  INSE 72
           I++E
Sbjct: 216 IDAE 219


>gi|323967911|gb|EGB63323.1| glutamate synthase [Escherichia coli M863]
 gi|327252117|gb|EGE63789.1| protein aegA [Escherichia coli STEC_7v]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|303256511|ref|ZP_07342525.1| formate-dependent nitrite reductase, NrfC protein [Burkholderiales
           bacterium 1_1_47]
 gi|331000610|ref|ZP_08324268.1| putative thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
 gi|302860002|gb|EFL83079.1| formate-dependent nitrite reductase, NrfC protein [Burkholderiales
           bacterium 1_1_47]
 gi|329571172|gb|EGG52877.1| putative thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
          Length = 246

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV VCP    +     N + + PD+C+ C  C   CP +
Sbjct: 116 SCQQCLDAPCVRVCPTQAAHRDPETNIVTMDPDKCVGCKYCIAACPYN 163


>gi|289422577|ref|ZP_06424420.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289157149|gb|EFD05771.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 595

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 9   CILCKHTDCVEV-CPVDCF--YEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C++  CP      Y+G   L  +I P++C+ CG+C   CPV AIK
Sbjct: 540 CIGCK--TCIKTNCPPLRMKKYDGIEKLKSSIDPNQCVGCGICAQVCPVGAIK 590


>gi|260856818|ref|YP_003230709.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260869386|ref|YP_003235788.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O111:H- str. 11128]
 gi|331654190|ref|ZP_08355190.1| electron transport protein HydN [Escherichia coli M718]
 gi|257755467|dbj|BAI26969.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257765742|dbj|BAI37237.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O111:H- str. 11128]
 gi|323154924|gb|EFZ41116.1| aegA domain protein [Escherichia coli EPECa14]
 gi|323180131|gb|EFZ65683.1| protein aegA domain protein [Escherichia coli 1180]
 gi|331047572|gb|EGI19649.1| electron transport protein HydN [Escherichia coli M718]
          Length = 175

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|288573617|ref|ZP_06391974.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
          DSM 11002]
 gi|288569358|gb|EFC90915.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
          DSM 11002]
          Length = 586

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          Y V  +C  C    CV  CPV              D C+ CG C   CPV A  I+ D  
Sbjct: 14 YTVKNDCQDC--YKCVRACPVKAIKIENGHAQEISDHCVLCGRCVEICPVGAKRIRDDRP 71

Query: 61 PGLEL 65
              L
Sbjct: 72 EAERL 76


>gi|91226902|ref|ZP_01261499.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 12G01]
 gi|91188865|gb|EAS75150.1| tetrathionate reductase, subunit B [Vibrio alginolyticus 12G01]
          Length = 255

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
            +++   C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  D
Sbjct: 102 AFMLPRLCNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINED 161

Query: 59  T 59
           T
Sbjct: 162 T 162


>gi|15803230|ref|NP_289262.1| electron transport protein HydN [Escherichia coli O157:H7 EDL933]
 gi|25285312|pir||H85919 hypothetical protein hydN [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517158|gb|AAG57820.1|AE005499_7 involved in electron transport from formate to hydrogen, Fe-S
           centers [Escherichia coli O157:H7 str. EDL933]
          Length = 175

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|238793594|ref|ZP_04637217.1| Hydrogenase-2 operon protein hybA [Yersinia intermedia ATCC 29909]
 gi|238727009|gb|EEQ18540.1| Hydrogenase-2 operon protein hybA [Yersinia intermedia ATCC 29909]
          Length = 342

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C   +CV VCPV    +      +   P+ C  C  C   CP +  K D +
Sbjct: 113 IKKQCMHCVDPNCVSVCPVSALRKDAKTGIVHYDPNICTGCRYCMVGCPFNVPKYDYD 170


>gi|332161836|ref|YP_004298413.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605661|emb|CBY27159.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666066|gb|ADZ42710.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 207

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 163


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 12/61 (19%)

Query: 7    ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIK 56
            E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+IK
Sbjct: 1218 ERCIACKL--CEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSIK 1275

Query: 57   P 57
             
Sbjct: 1276 F 1276



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38   DECIDCGVCEPECPVDAIKPDTE 60
            + CI C +CE  CP  AI  +++
Sbjct: 1218 ERCIACKLCEAVCPAMAITIESD 1240


>gi|291279072|ref|YP_003495907.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
 gi|290753774|dbj|BAI80151.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
          Length = 191

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C    CV VCP    ++ ++ +  I    CI C  C   CP DA   + E 
Sbjct: 58  YFLPSQCNHCDDPPCVHVCPTKASHKRDDGIVYIDRGRCIGCKYCIVSCPYDARFFNEEL 117

Query: 62  G 62
           G
Sbjct: 118 G 118


>gi|282857225|ref|ZP_06266469.1| ferredoxin [Pyramidobacter piscolens W5455]
 gi|282585011|gb|EFB90335.1| ferredoxin [Pyramidobacter piscolens W5455]
          Length = 279

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T  CI C    CV+VCP            I P  C++CG+C  +CPV AI
Sbjct: 214 VCTVGCIGC--QMCVKVCPKQTISMKGALAVIDPSNCVNCGLCAAKCPVHAI 263



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
               CV+ C  D  +       +  D+C+ C  C   CP   I
Sbjct: 147 GFGTCVKACKFDAIHVINGVAKVDRDKCVGCQACVEACPRGII 189


>gi|269793046|ref|YP_003317950.1| glycyl-radical enzyme activating protein family
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100681|gb|ACZ19668.1| glycyl-radical enzyme activating protein family
          [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 301

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C+ C    C   CP      GE  L +    C+ CG+C   CP DA
Sbjct: 53 ERCVGCG--RCALACPAGAISYGE-HLRLDRSRCVRCGMCAQACPADA 97



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 37 PDECIDCGVCEPECPVDAIKP 57
          P+ C+ CG C   CP  AI  
Sbjct: 52 PERCVGCGRCALACPAGAISY 72


>gi|167622346|ref|YP_001672640.1| dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
 gi|167352368|gb|ABZ74981.1| Dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
          Length = 207

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++ +C  C    C + CP    ++   +  + +  D CI C  CE  CP  A + + 
Sbjct: 61  AYYLSISCNHCAEPACTKACPTGAMHKRSQDGLVVVDTDVCIGCRYCEMACPYGAPQYNP 120

Query: 60  E 60
           E
Sbjct: 121 E 121


>gi|149189646|ref|ZP_01867928.1| tetrathionate reductase, subunit B [Vibrio shilonii AK1]
 gi|148836458|gb|EDL53413.1| tetrathionate reductase, subunit B [Vibrio shilonii AK1]
          Length = 255

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDT 59
           C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA  I  DT
Sbjct: 109 CNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDARFINEDT 162


>gi|78776861|ref|YP_393176.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas
          denitrificans DSM 1251]
 gi|78497401|gb|ABB43941.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas
          denitrificans DSM 1251]
          Length = 84

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ + CI C    C E CP     EG+    I PD C +C        C   CPVD 
Sbjct: 1  MALIINDECIACD--ACREECPTIAIEEGDPIYFIDPDRCTECVGVYDEPACISVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDKD 64


>gi|238792005|ref|ZP_04635641.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
 gi|238728636|gb|EEQ20154.1| Anaerobic dimethyl sulfoxide reductase chain B [Yersinia intermedia
           ATCC 29909]
          Length = 205

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C    CV  CP    +  E +  + ++ D C+ C  CE  CP  A + D +
Sbjct: 60  YYLSIACNHCSSPTCVTGCPTGAMHKREEDGLVVVNQDLCVGCRYCEMRCPYGAPQFDAK 119

Query: 61  PGL 63
             L
Sbjct: 120 KKL 122


>gi|257453974|ref|ZP_05619250.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus
           SK60]
 gi|257448639|gb|EEV23606.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus
           SK60]
          Length = 183

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 61  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 118

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKK 84
              +  L  + + N  Y  +   I+   
Sbjct: 119 MTPDFELGEYNRQNLVYEKEHLLISGPG 146


>gi|163814915|ref|ZP_02206303.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759]
 gi|158449854|gb|EDP26849.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759]
          Length = 597

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E CI CK   C+    CP       +  +AI    C  CG+C   CPV AI
Sbjct: 543 ISEKCIQCK--KCIREIGCP--AIILKDGKVAIDESLCTGCGLCAQICPVGAI 591


>gi|20428812|emb|CAD21687.1| phenylacetyl CoA [Azoarcus evansii]
          Length = 238

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            V   C+ C    C EVCP     +  + L  I  D CI C  C   CP +A
Sbjct: 76  FVPVACMHCDEPPCEEVCPTKATTKRPDGLVAIDYDTCIGCANCVMACPYEA 127


>gi|289810899|ref|ZP_06541528.1| putative anaerobic reductase component [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 125

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
            Y ++ +C  C    C + CP    +   G+  + +  D+C+ CG C   CP  A
Sbjct: 71  AYTLSISCNHCADPVCTKNCPTTAMHKRPGDGIVRVDTDKCVGCGYCAWSCPYGA 125


>gi|144898861|emb|CAM75725.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 327

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
            + ++C+ C    CV VCPV    + +    +  + D CI C  C   CP    + +
Sbjct: 114 FIKKSCMHCVDPSCVSVCPVSAMTKDKQTGIVGYNADICIGCRYCVASCPFGVPQSE 170


>gi|152995572|ref|YP_001340407.1| electron transport complex protein RnfB [Marinomonas sp. MWYL1]
 gi|150836496|gb|ABR70472.1| electron transport complex, RnfABCDGE type, B subunit [Marinomonas
           sp. MWYL1]
          Length = 198

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 113 DECIGC--TKCIQACPVDAILGAAKQMHTVIADECTGCDLCVEPCPVDCI 160



 Score = 40.1 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +  E       I  DECI C  C   CPVDAI
Sbjct: 90  VEAVPLDGDHGTESAKRVAVIREDECIGCTKCIQACPVDAI 130



 Score = 34.7 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    CVE CPVDC 
Sbjct: 137 MHTVIADECTGCDL--CVEPCPVDCI 160


>gi|221066934|ref|ZP_03543039.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
 gi|220711957|gb|EED67325.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
          Length = 224

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK----P 57
           V+ E  CI C  T C++ CP D        +  +  D C  C +C P CPVD I+     
Sbjct: 88  VIDEAWCIGC--TLCIKACPTDAILGANKRMHTVIADHCTGCELCIPVCPVDCIELINAS 145

Query: 58  DTEPGLELWLKINSEYAT 75
               G   W    +E+A 
Sbjct: 146 ADTTGWSAWSAAQAEHAR 163



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 21/83 (25%), Gaps = 36/83 (43%)

Query: 9   CILCKHTDC-------------VEVCPVDC----------------------FYEGENFL 33
           C  C + DC             +  CP                           E    L
Sbjct: 27  CTRCGYPDCASYAQAIASGEAAINQCPPGGQEGVRRLASITGRPELPLNPENGLEAPRAL 86

Query: 34  -AIHPDECIDCGVCEPECPVDAI 55
             I    CI C +C   CP DAI
Sbjct: 87  AVIDEAWCIGCTLCIKACPTDAI 109



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ ++C  C+   C+ VCPVDC 
Sbjct: 116 MHTVIADHCTGCEL--CIPVCPVDCI 139


>gi|222054116|ref|YP_002536478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563405|gb|ACM19377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 261

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+  + +  +    CI CG C   CP  
Sbjct: 127 AFFVPKLCNQCDNPPCVQVCPVGATYQTADGVVLVDRSWCIGCGYCIMGCPYG 179


>gi|219667677|ref|YP_002458112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219537937|gb|ACL19676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 206

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
            C  C++  CV+VCPV   Y+ E+  + I+ D CI C  C   CP +A
Sbjct: 65  ACQHCENAACVKVCPVGATYKDESGRVVINYDRCIGCRFCMAACPYNA 112


>gi|23013477|ref|ZP_00053367.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 217

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C +VCP        +  + I  D CI CG C   CP  A
Sbjct: 58  CMHCDEPPCRDVCPTTATTKRADGMVMIDYDICIGCGYCIVACPYQA 104


>gi|330998930|ref|ZP_08322657.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329576144|gb|EGG57663.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 253

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPV 52
           +   C  C++  CV+VCP    +     + +H DE CI C +C+  CP 
Sbjct: 58  IPVMCNHCENPQCVKVCPTGAMFISPEGVVLHNDEVCIGCRLCQKACPY 106


>gi|326402930|ref|YP_004283011.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
 gi|325049791|dbj|BAJ80129.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
          Length = 170

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EG---ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        EG     F  I+   CI CG CE  CP  AI+ 
Sbjct: 49  ERCVSCYL--CAVACPVDCISLQKTEAEGRWYPEFFRINFSRCIFCGFCEEACPTYAIQL 106

Query: 58  DTEPGLELWLKINSEYATQWPNITTKKESLP 88
             +  +  + + N  Y  +   I+   +   
Sbjct: 107 TPDFEMSEYDRQNLVYEKEHLLISGTGKYPD 137


>gi|297571805|ref|YP_003697579.1| dimethylsulfoxide reductase, chain B [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932152|gb|ADH92960.1| dimethylsulfoxide reductase, chain B [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 212

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C++  C++VCP        +  + +   +C+ C  C+  CP  A + ++E
Sbjct: 67  AYYTSISCNHCENPVCMQVCPTTAMTRRPDGTVYVDESKCVGCRYCQWACPYGAPQLNSE 126

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKY 103
            G      +  +Y ++  +          A     + +  EKY
Sbjct: 127 TGHMSKCDLCYDYRSEGKDPACVSACPSRALDWGPIDELREKY 169


>gi|268680891|ref|YP_003305322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618922|gb|ACZ13287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 220

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP +  +  E  +  + P +CI C  C   CP DA   D 
Sbjct: 59  CNHCIDAPCVSVCPTNASHFAEGGIVKVDPHKCILCKGCMEACPYDARFVDD 110


>gi|217968097|ref|YP_002353603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus
           turgidum DSM 6724]
 gi|217337196|gb|ACK42989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus
           turgidum DSM 6724]
          Length = 369

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
           CI C    CV+ CP       +    +  P+ CI CG C   CP  AIK
Sbjct: 195 CIGC--RRCVDHCPTGALEMVDKKSKLTRPELCIGCGECAVVCPTSAIK 241



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           +P+ CI C  C   CP  A++   +       ++
Sbjct: 191 NPNLCIGCRRCVDHCPTGALEMVDKKSKLTRPEL 224


>gi|193215552|ref|YP_001996751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089029|gb|ACF14304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 199

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C++T C+  CP    Y+ E+ +  I+ D CI C  C   CP DA  P     +E 
Sbjct: 60  CMHCENTPCLSACPTGATYKTEDGIVRINYDRCIGCYACMIACPYDARYPYDGDDVEK 117


>gi|169335902|ref|ZP_02863095.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258640|gb|EDS72606.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
          Length = 202

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + E CI CK   C  +CP    YE    + I  + C+ CG+C   CPV A++
Sbjct: 149 YFINETCINCK--KCFNLCPQSAIYELNGIMNIKNENCLHCGLCYENCPVKAVE 200


>gi|152979394|ref|YP_001345023.1| electron transport complex protein RnfB [Actinobacillus
           succinogenes 130Z]
 gi|150841117|gb|ABR75088.1| electron transport complex, RnfABCDGE type, B subunit
           [Actinobacillus succinogenes 130Z]
          Length = 189

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-T 59
            ++  + CI C  T CV+ CPVD        L  + P+ C  C +C   CP D I  +  
Sbjct: 104 AFIHEDMCIGC--TKCVQACPVDAIIGTNKTLHTVIPELCTGCELCVAPCPTDCITMEKV 161

Query: 60  EPGLELW 66
           EP +E W
Sbjct: 162 EPKIENW 168


>gi|170765926|ref|ZP_02900737.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170125072|gb|EDS94003.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 175

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|156934238|ref|YP_001438154.1| hypothetical protein ESA_02068 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532492|gb|ABU77318.1| hypothetical protein ESA_02068 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 162

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C +VCPV+        + ++   C+ C +C   CP  AI+ 
Sbjct: 10 QLCHHCEDAPCAQVCPVNAITREAGAIQLNESLCVSCKLCGIACPFGAIEF 60


>gi|89897565|ref|YP_521052.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219670692|ref|YP_002461127.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89337013|dbj|BAE86608.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219540952|gb|ACL22691.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  CK   CV+ CP    + GE+    H  D CI C  C   CP    + 
Sbjct: 51  AYYLSMSCNHCKEAKCVKGCPTGAMHFGEDGTVQHDKDMCIGCKYCVWNCPYSVPQY 107


>gi|322694431|gb|EFY86261.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium acridum
           CQMa 102]
          Length = 320

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 219 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 276

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 277 ESP----------NAEYATE 286


>gi|315615112|gb|EFU95749.1| hydrogenase-4 component A [Escherichia coli 3431]
          Length = 164

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 10 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 60


>gi|257790284|ref|YP_003180890.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830097|ref|ZP_08163554.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474181|gb|ACV54501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487564|gb|EGC90002.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 227

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TY +T  C  C++ +CV+VCP    ++ E+    I   +CI C  C   CP      + E
Sbjct: 57  TYFLTVQCQHCENPECVKVCPTGASHKLEDGTVQIDKSKCIGCQFCAMSCPYSVRYLNEE 116

Query: 61  PG 62
            G
Sbjct: 117 EG 118


>gi|257790233|ref|YP_003180839.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474130|gb|ACV54450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 216

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 60  SYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118


>gi|158521885|ref|YP_001529755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510711|gb|ABW67678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 362

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
             V  +NC  C    CVE C ++      + + +    CI CG C   CP +A
Sbjct: 289 ARVNPDNCTGCG--TCVEHCQMEALTLDNDMVVLQESWCIGCGNCAGACPSEA 339



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           ++PD C  CG C   C ++A+  D +
Sbjct: 291 VNPDNCTGCGTCVEHCQMEALTLDND 316


>gi|15832823|ref|NP_311596.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130620|ref|NP_417193.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82545212|ref|YP_409159.1| electron transport protein HydN [Shigella boydii Sb227]
 gi|89109500|ref|AP_003280.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|110642833|ref|YP_670563.1| electron transport protein HydN [Escherichia coli 536]
 gi|110806662|ref|YP_690182.1| electron transport protein HydN [Shigella flexneri 5 str. 8401]
 gi|117624944|ref|YP_853932.1| electron transport protein HydN [Escherichia coli APEC O1]
 gi|157155890|ref|YP_001464021.1| electron transport protein HydN [Escherichia coli E24377A]
 gi|157162159|ref|YP_001459477.1| electron transport protein HydN [Escherichia coli HS]
 gi|168749963|ref|ZP_02774985.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755457|ref|ZP_02780464.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762889|ref|ZP_02787896.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768803|ref|ZP_02793810.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774756|ref|ZP_02799763.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778694|ref|ZP_02803701.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787967|ref|ZP_02812974.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|168800207|ref|ZP_02825214.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|170019041|ref|YP_001723995.1| electron transport protein HydN [Escherichia coli ATCC 8739]
 gi|170082289|ref|YP_001731609.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170682992|ref|YP_001744860.1| electron transport protein HydN [Escherichia coli SMS-3-5]
 gi|187730815|ref|YP_001881539.1| electron transport protein HydN [Shigella boydii CDC 3083-94]
 gi|188496192|ref|ZP_03003462.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|191166802|ref|ZP_03028628.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|191171388|ref|ZP_03032937.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|193065052|ref|ZP_03046127.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|193069647|ref|ZP_03050599.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194427882|ref|ZP_03060428.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|194438980|ref|ZP_03071064.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|195938462|ref|ZP_03083844.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809271|ref|ZP_03251608.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814231|ref|ZP_03255560.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821974|ref|ZP_03262294.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397141|ref|YP_002272175.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920152|ref|YP_002294236.1| electron transport protein HydN [Escherichia coli SE11]
 gi|215488028|ref|YP_002330459.1| electron transport protein HydN [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326848|ref|ZP_03442931.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547779|ref|YP_002381570.1| electron transport protein HydN [Escherichia fergusonii ATCC 35469]
 gi|218555255|ref|YP_002388168.1| electron transport protein HydN [Escherichia coli IAI1]
 gi|218559701|ref|YP_002392614.1| electron transport protein HydN [Escherichia coli S88]
 gi|218690835|ref|YP_002399047.1| electron transport protein HydN [Escherichia coli ED1a]
 gi|218696304|ref|YP_002403971.1| electron transport protein HydN [Escherichia coli 55989]
 gi|218706207|ref|YP_002413726.1| electron transport protein HydN [Escherichia coli UMN026]
 gi|238901850|ref|YP_002927646.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli BW2952]
 gi|253772432|ref|YP_003035263.1| electron transporter HydN [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162644|ref|YP_003045752.1| electron transport protein HydN [Escherichia coli B str. REL606]
 gi|254794653|ref|YP_003079490.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019510|ref|ZP_05433375.1| electron transport protein HydN [Shigella sp. D9]
 gi|256024780|ref|ZP_05438645.1| electron transport protein HydN [Escherichia sp. 4_1_40B]
 gi|260845355|ref|YP_003223133.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|261226007|ref|ZP_05940288.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256735|ref|ZP_05949268.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O157:H7 str. FRIK966]
 gi|293406204|ref|ZP_06650130.1| electron transporter HydN [Escherichia coli FVEC1412]
 gi|293412068|ref|ZP_06654791.1| electron transporter HydN [Escherichia coli B354]
 gi|293415962|ref|ZP_06658602.1| electron transporter HydN [Escherichia coli B185]
 gi|293449026|ref|ZP_06663447.1| electron transporter HydN [Escherichia coli B088]
 gi|298381941|ref|ZP_06991538.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|300919256|ref|ZP_07135778.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300930569|ref|ZP_07145962.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|300947011|ref|ZP_07161236.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301027406|ref|ZP_07190744.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301645309|ref|ZP_07245258.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|306812409|ref|ZP_07446607.1| electron transport protein HydN [Escherichia coli NC101]
 gi|307139400|ref|ZP_07498756.1| electron transport protein HydN [Escherichia coli H736]
 gi|307314402|ref|ZP_07594007.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|312965263|ref|ZP_07779498.1| aegA domain protein [Escherichia coli 2362-75]
 gi|312973078|ref|ZP_07787251.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|331643396|ref|ZP_08344527.1| electron transport protein HydN [Escherichia coli H736]
 gi|331648431|ref|ZP_08349519.1| electron transport protein HydN [Escherichia coli M605]
 gi|331658818|ref|ZP_08359760.1| electron transport protein HydN [Escherichia coli TA206]
 gi|331664264|ref|ZP_08365170.1| electron transport protein HydN [Escherichia coli TA143]
 gi|331669445|ref|ZP_08370291.1| electron transport protein HydN [Escherichia coli TA271]
 gi|331678685|ref|ZP_08379359.1| electron transport protein HydN [Escherichia coli H591]
 gi|331684325|ref|ZP_08384917.1| electron transport protein HydN [Escherichia coli H299]
 gi|77417745|sp|P0AAK6|HYDN_ECO57 RecName: Full=Electron transport protein hydN
 gi|77417746|sp|P0AAK5|HYDN_ECOL6 RecName: Full=Electron transport protein hydN
 gi|77417747|sp|P0AAK4|HYDN_ECOLI RecName: Full=Electron transport protein hydN
 gi|216575|dbj|BAA03314.1| 4Fe-4S iron-sulfer protein, putative [Escherichia coli]
 gi|882606|gb|AAA69223.1| 4Fe-4S iron-sulfur protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789067|gb|AAC75755.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13363040|dbj|BAB36992.1| electron transport protein HydN [Escherichia coli O157:H7 str.
           Sakai]
 gi|81246623|gb|ABB67331.1| HydN [Shigella boydii Sb227]
 gi|85675534|dbj|BAE76790.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|110344425|gb|ABG70662.1| putative electron-transport protein [Escherichia coli 536]
 gi|110616210|gb|ABF04877.1| Electron transport protein hydN [Shigella flexneri 5 str. 8401]
 gi|115514068|gb|ABJ02143.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli APEC O1]
 gi|157067839|gb|ABV07094.1| 4Fe-4S binding domain protein [Escherichia coli HS]
 gi|157077920|gb|ABV17628.1| 4Fe-4S binding domain protein [Escherichia coli E24377A]
 gi|169753969|gb|ACA76668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|169890124|gb|ACB03831.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170520710|gb|ACB18888.1| 4Fe-4S binding domain protein [Escherichia coli SMS-3-5]
 gi|187427807|gb|ACD07081.1| 4Fe-4S binding domain protein [Shigella boydii CDC 3083-94]
 gi|187769622|gb|EDU33466.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015768|gb|EDU53890.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188491391|gb|EDU66494.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|189003161|gb|EDU72147.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357299|gb|EDU75718.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362067|gb|EDU80486.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366905|gb|EDU85321.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372111|gb|EDU90527.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|189377524|gb|EDU95940.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|190903173|gb|EDV62896.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|190908322|gb|EDV67912.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|192927349|gb|EDV81968.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|192957010|gb|EDV87461.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194414115|gb|EDX30391.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|194422101|gb|EDX38104.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|208729072|gb|EDZ78673.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735508|gb|EDZ84195.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208742097|gb|EDZ89779.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158541|gb|ACI35974.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761968|gb|ACI79296.1| electron transport protein HydN [Escherichia coli]
 gi|209761970|gb|ACI79297.1| electron transport protein HydN [Escherichia coli]
 gi|209761972|gb|ACI79298.1| electron transport protein HydN [Escherichia coli]
 gi|209761976|gb|ACI79300.1| electron transport protein HydN [Escherichia coli]
 gi|209913411|dbj|BAG78485.1| electron transport protein [Escherichia coli SE11]
 gi|215266100|emb|CAS10525.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217319215|gb|EEC27640.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353036|emb|CAU98861.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli 55989]
 gi|218355320|emb|CAQ87927.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218362023|emb|CAQ99630.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli IAI1]
 gi|218366470|emb|CAR04222.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli S88]
 gi|218428399|emb|CAR09325.2| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli ED1a]
 gi|218433304|emb|CAR14204.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli UMN026]
 gi|222034406|emb|CAP77148.1| electron transport protein hydN [Escherichia coli LF82]
 gi|238861128|gb|ACR63126.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli BW2952]
 gi|242378270|emb|CAQ33045.1| putative electron transport protein HydN [Escherichia coli
           BL21(DE3)]
 gi|253323476|gb|ACT28078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974545|gb|ACT40216.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli B str. REL606]
 gi|253978712|gb|ACT44382.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli BL21(DE3)]
 gi|254594053|gb|ACT73414.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257760502|dbj|BAI31999.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|260448237|gb|ACX38659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|281179717|dbj|BAI56047.1| electron transport protein [Escherichia coli SE15]
 gi|291322116|gb|EFE61545.1| electron transporter HydN [Escherichia coli B088]
 gi|291426210|gb|EFE99242.1| electron transporter HydN [Escherichia coli FVEC1412]
 gi|291432151|gb|EFF05133.1| electron transporter HydN [Escherichia coli B185]
 gi|291468839|gb|EFF11330.1| electron transporter HydN [Escherichia coli B354]
 gi|294489974|gb|ADE88730.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|298277081|gb|EFI18597.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|299879300|gb|EFI87511.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300413653|gb|EFJ96963.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300453352|gb|EFK16972.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300461561|gb|EFK25054.1| 4Fe-4S binding domain protein [Escherichia coli MS 187-1]
 gi|301076402|gb|EFK91208.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|305854447|gb|EFM54885.1| electron transport protein HydN [Escherichia coli NC101]
 gi|306905970|gb|EFN36491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|307625718|gb|ADN70022.1| electron transport protein HydN [Escherichia coli UM146]
 gi|309703072|emb|CBJ02404.1| electron transport protein [Escherichia coli ETEC H10407]
 gi|310333020|gb|EFQ00234.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|312290099|gb|EFR17984.1| aegA domain protein [Escherichia coli 2362-75]
 gi|312947241|gb|ADR28068.1| electron transport protein HydN [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315061989|gb|ADT76316.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli W]
 gi|315137320|dbj|BAJ44479.1| electron transporter hydN [Escherichia coli DH1]
 gi|315615099|gb|EFU95736.1| hydrogenase-4 component A [Escherichia coli 3431]
 gi|320173435|gb|EFW48634.1| Electron transport protein HydN [Shigella dysenteriae CDC 74-1112]
 gi|320180866|gb|EFW55789.1| Electron transport protein HydN [Shigella boydii ATCC 9905]
 gi|320186499|gb|EFW61227.1| Electron transport protein HydN [Shigella flexneri CDC 796-83]
 gi|320189045|gb|EFW63704.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194847|gb|EFW69476.1| Electron transport protein HydN [Escherichia coli WV_060327]
 gi|320202359|gb|EFW76929.1| Electron transport protein HydN [Escherichia coli EC4100B]
 gi|320640356|gb|EFX09895.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320645903|gb|EFX14884.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651203|gb|EFX19638.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656753|gb|EFX24641.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320667347|gb|EFX34305.1| formate dehydrogenase-H ferredoxin subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323159862|gb|EFZ45833.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323167114|gb|EFZ52832.1| hydrogenase-4 component A [Shigella sonnei 53G]
 gi|323173004|gb|EFZ58635.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323188875|gb|EFZ74160.1| hydrogenase-4 component A [Escherichia coli RN587/1]
 gi|323935732|gb|EGB32046.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941457|gb|EGB37640.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323946409|gb|EGB42437.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|323951069|gb|EGB46945.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957077|gb|EGB52802.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|323960628|gb|EGB56254.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323966858|gb|EGB62287.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|323971559|gb|EGB66792.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|323978679|gb|EGB73761.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
 gi|324017065|gb|EGB86284.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|324111337|gb|EGC05319.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|324119962|gb|EGC13840.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326339216|gb|EGD63031.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1044]
 gi|326342901|gb|EGD66669.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1125]
 gi|327251432|gb|EGE63118.1| protein aegA domain protein [Escherichia coli STEC_7v]
 gi|330908744|gb|EGH37258.1| electron transport protein HydN [Escherichia coli AA86]
 gi|331036867|gb|EGI09091.1| electron transport protein HydN [Escherichia coli H736]
 gi|331042178|gb|EGI14320.1| electron transport protein HydN [Escherichia coli M605]
 gi|331053400|gb|EGI25429.1| electron transport protein HydN [Escherichia coli TA206]
 gi|331058195|gb|EGI30176.1| electron transport protein HydN [Escherichia coli TA143]
 gi|331063113|gb|EGI35026.1| electron transport protein HydN [Escherichia coli TA271]
 gi|331073515|gb|EGI44836.1| electron transport protein HydN [Escherichia coli H591]
 gi|331077940|gb|EGI49146.1| electron transport protein HydN [Escherichia coli H299]
 gi|332087432|gb|EGI92560.1| hydrogenase-4 component A [Shigella boydii 5216-82]
 gi|332092187|gb|EGI97265.1| hydrogenase-4 component A [Shigella boydii 3594-74]
 gi|333001052|gb|EGK20622.1| hydrogenase-4 component A [Shigella flexneri K-272]
 gi|333015445|gb|EGK34784.1| hydrogenase-4 component A [Shigella flexneri K-227]
          Length = 175

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|283786092|ref|YP_003365957.1| oxidoreductase [Citrobacter rodentium ICC168]
 gi|282949546|emb|CBG89161.1| oxidoreductase [Citrobacter rodentium ICC168]
          Length = 652

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CRHCEDAPCARSCPNGAISHLNDSVQVNQQKCIGCKSCVVACPFG 100


>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 626

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C +VCP      E +    I+ ++CI+CG C   C   +I
Sbjct: 578 CIGC--TACTKVCPTKAISGEVKKAHVINKEKCINCGACSSTCKFSSI 623



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP           +I P +CI C  C   CP  AI  + +   
Sbjct: 560 CPAG-VCTALLKYSIDPKKCIGCTACTKVCPTKAISGEVKKAH 601


>gi|227888249|ref|ZP_04006054.1| electron transport protein HydN [Escherichia coli 83972]
 gi|227834518|gb|EEJ44984.1| electron transport protein HydN [Escherichia coli 83972]
 gi|307554687|gb|ADN47462.1| electron transport protein HydN [Escherichia coli ABU 83972]
          Length = 175

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|146297119|ref|YP_001180890.1| thiamine pyrophosphate binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410695|gb|ABP67699.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 598

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           Y + E CI CK    V  CP     E E+  + I    C  CG+C   CP  AIK
Sbjct: 540 YRINEKCINCKACLNVTGCP--AISEDEDKNVFIDKTLCNGCGLCANFCPRMAIK 592


>gi|309784808|ref|ZP_07679441.1| protein aegA [Shigella dysenteriae 1617]
 gi|308927178|gb|EFP72652.1| protein aegA [Shigella dysenteriae 1617]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|302337663|ref|YP_003802869.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634848|gb|ADK80275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 234

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
            E C  C    C   CPV      EN     ++ D CI CG CE  CP  
Sbjct: 130 GETCKQCAEPYCANACPVQAISTDENTGARVVNTDICIGCGSCERACPFG 179


>gi|270263102|ref|ZP_06191372.1| hypothetical protein SOD_d01180 [Serratia odorifera 4Rx13]
 gi|270042790|gb|EFA15884.1| hypothetical protein SOD_d01180 [Serratia odorifera 4Rx13]
          Length = 198

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCP          + +  + CI C  C   CP  A++  T P +  
Sbjct: 76  CRQCEDAPCANVCPNGAISRQNGMVLVMQERCIGCKTCVVACPYGAMEVITRPVIRQ 132


>gi|224370949|ref|YP_002605113.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693666|gb|ACN16949.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 361

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  E C  C+   C++ C ++    G +   +    CI CG+C   CPVDAI+ + +P
Sbjct: 271 AVVDPEECTACE--TCLDRCQMNAIEIG-DAAVVDHARCIGCGLCVTTCPVDAIRLEEKP 327


>gi|242277841|ref|YP_002989970.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120735|gb|ACS78431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 170

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 16/46 (34%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CPV         + I  + C  C  C   CP  A
Sbjct: 59  CRQCEDAPCAAACPVGAIGYNGKSVVIDAERCFGCKACLAACPFGA 104


>gi|170767182|ref|ZP_02901635.1| protein aegA [Escherichia albertii TW07627]
 gi|170123516|gb|EDS92447.1| protein aegA [Escherichia albertii TW07627]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|332344593|gb|AEE57927.1| hydrogenase-4 component A [Escherichia coli UMNK88]
          Length = 175

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|294083719|ref|YP_003550476.1| NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663291|gb|ADE38392.1| NADH-quinone oxidoreductase, chain I [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 162

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 118

Query: 56  -----KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKM 93
                +  TE   EL+   N   A      T    +L + A+ 
Sbjct: 119 EGPNFEFATETREELYYDKNKLLANGDRWETEIARNLAADAEW 161


>gi|283836636|ref|ZP_06356377.1| cytochrome c nitrite reductase, Fe-S protein [Citrobacter youngae
           ATCC 29220]
 gi|291067370|gb|EFE05479.1| cytochrome c nitrite reductase, Fe-S protein [Citrobacter youngae
           ATCC 29220]
          Length = 223

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    + +  N +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPY 137


>gi|220904100|ref|YP_002479412.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868399|gb|ACL48734.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 290

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +++C  C    C+  CP       E   +    D C  C  C   CP   I  + + G  
Sbjct: 109 SDSCKHCDDAPCMRACPTGALVRTEVGGVYPQADICNGCASCVAACPFGVIARNEKSGHS 168

Query: 65  L 65
            
Sbjct: 169 H 169


>gi|204929696|ref|ZP_03220770.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321415|gb|EDZ06615.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 653

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|309786192|ref|ZP_07680820.1| hydrogenase-4 component A [Shigella dysenteriae 1617]
 gi|308925937|gb|EFP71416.1| hydrogenase-4 component A [Shigella dysenteriae 1617]
          Length = 164

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 10 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 60


>gi|114320829|ref|YP_742512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227223|gb|ABI57022.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 230

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y  E +  + I  D+C+ C  C   CP  A + D
Sbjct: 71  SCMHCEDPVCVTVCPTGASYKREEDGIVLIDQDKCMGCNYCAWACPYGARELD 123


>gi|332998146|gb|EGK17750.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           VA-6]
          Length = 223

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCEHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|262275677|ref|ZP_06053486.1| tetrathionate reductase subunit B [Grimontia hollisae CIP 101886]
 gi|262219485|gb|EEY70801.1| tetrathionate reductase subunit B [Grimontia hollisae CIP 101886]
          Length = 255

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   Y+ E+ +  +    C+ C  C   CP DA
Sbjct: 109 CNHCDNPPCVAVCPVQATYQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|261211946|ref|ZP_05926232.1| electron transport complex protein RnfB [Vibrio sp. RC341]
 gi|260838554|gb|EEX65205.1| electron transport complex protein RnfB [Vibrio sp. RC341]
          Length = 195

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   L  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|255319168|ref|ZP_05360386.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262379300|ref|ZP_06072456.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
 gi|255303814|gb|EET83013.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262298757|gb|EEY86670.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
          Length = 266

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C+  CPVD     G+    +  D C  C +C P CPVD I
Sbjct: 90  DECIGC--TKCISACPVDAIIGSGKLMHTVLTDLCTGCELCIPPCPVDCI 137



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  DECI C  C   CPVDAI
Sbjct: 86  VIREDECIGCTKCISACPVDAI 107



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   C+  CPVDC 
Sbjct: 114 MHTVLTDLCTGCEL--CIPPCPVDCI 137


>gi|322419479|ref|YP_004198702.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125866|gb|ADW13426.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 279

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C  VCPV  F + +          CI C  C   CP    K +
Sbjct: 82  EMCMHCNEPACASVCPVGAFKKTKEGPVTYDAKRCIGCRFCMVACPFGVPKYE 134


>gi|224105397|ref|XP_002313797.1| predicted protein [Populus trichocarpa]
 gi|222850205|gb|EEE87752.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 121 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAICPAQAITIEAEERED 147



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 162 CIYCGF--CQEACPVDAIVEGPNF 183


>gi|171186292|ref|YP_001795211.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170935504|gb|ACB40765.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 232

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C+ T C+EVCP    Y+ +  +  I  D+CI C  C   CP  
Sbjct: 69  CNHCEKTPCLEVCPTQATYKTKEGIVLIDKDKCIGCRYCIMACPYG 114


>gi|197117961|ref|YP_002138388.1| formate dehydrogenase iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
 gi|197087321|gb|ACH38592.1| formate dehydrogenase, iron-sulfur subunit [Geobacter bemidjiensis
           Bem]
          Length = 262

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C+ C    C++VCP     Y   E  +  + ++CI C  C   CP +  + D+  
Sbjct: 79  QRCMHCGDAGCIKVCPSPGALYRTKEGSVVFNKEKCIACKYCVSACPFNIPRYDSND 135


>gi|89896196|ref|YP_519683.1| hypothetical protein DSY3450 [Desulfitobacterium hafniense Y51]
 gi|219668013|ref|YP_002458448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89335644|dbj|BAE85239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538273|gb|ACL20012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 246

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC----EPECPVDAIKPDTEP 61
          E CI C    CV  CP++     +   +I+ + C++CG C       CP  AI    E 
Sbjct: 6  EKCIGCG--ICVSYCPMEAISVADKKASINQEMCVECGTCIRPRVVRCPTKAIYEPYEQ 62



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 33 LAIHPDECIDCGVCEPECPVDAI 55
          + I  ++CI CG+C   CP++AI
Sbjct: 1  MLIDQEKCIGCGICVSYCPMEAI 23


>gi|300855183|ref|YP_003780167.1| Fe-S-cluster-containing hydrogenase component [Clostridium
           ljungdahlii DSM 13528]
 gi|300435298|gb|ADK15065.1| Fe-S-cluster-containing hydrogenase component [Clostridium
           ljungdahlii DSM 13528]
          Length = 190

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C  + C  VCPV      EN + +  + CI C +C   CP  A
Sbjct: 59  CRQCDDSPCANVCPVGAIVHQENKVVVKTELCIGCKICMLACPFGA 104


>gi|291286605|ref|YP_003503421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883765|gb|ADD67465.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 248

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C  C +  CVE CP+   Y+ E +  + ++ + CI CG C+  CP DA +    P 
Sbjct: 104 ISLACNHCTNPACVEACPMGIIYKEEEYGLVLVNNETCISCGKCKEACPWDAPQF-YAPD 162

Query: 63  LELW 66
              +
Sbjct: 163 FSQY 166


>gi|209921900|ref|YP_002295979.1| thiosulfate reductase iron-sulfur subunit [Escherichia coli SE11]
 gi|209915393|dbj|BAG80464.1| thiosulfate reductase iron-sulfur subunit [Escherichia coli SE11]
          Length = 192

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    +  EN +  I    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASHRDENGIVQIDKSRCIGCDYCVAACPF 108


>gi|188587655|ref|YP_001920981.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium botulinum E3 str. Alaska E43]
 gi|188497936|gb|ACD51072.1| nitroreductase family protein [Clostridium botulinum E3 str.
          Alaska E43]
          Length = 273

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI CK   C+  CPV      +    I  + CI CG C   CP  A+  D 
Sbjct: 1  MFEVNKEKCISCKQ--CINDCPVSDILLIDGKANIKNESCIKCGHCIAICPTKAVSTDD 57


>gi|167769723|ref|ZP_02441776.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM
           17241]
 gi|167668084|gb|EDS12214.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM
           17241]
          Length = 177

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           +   C  C    C + CP      G      I    CI CG+C   CP  A+ 
Sbjct: 52  IPVMCQHCSDASCAKACPRGAIKRGAAGEQLIDDALCIGCGLCVRACPFGAVY 104


>gi|91211799|ref|YP_541785.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UTI89]
 gi|117624664|ref|YP_853577.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli APEC
           O1]
 gi|218559403|ref|YP_002392316.1| oxidoreductase Fe-S binding subunit [Escherichia coli S88]
 gi|237704983|ref|ZP_04535464.1| AegA protein [Escherichia sp. 3_2_53FAA]
 gi|91073373|gb|ABE08254.1| putative oxidoreductase Fe-S subunit [Escherichia coli UTI89]
 gi|115513788|gb|ABJ01863.1| putative oxidoreductase Fe-S subunit [Escherichia coli APEC O1]
 gi|218366172|emb|CAR03918.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia coli S88]
 gi|226901349|gb|EEH87608.1| AegA protein [Escherichia sp. 3_2_53FAA]
 gi|307625970|gb|ADN70274.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           UM146]
 gi|323949500|gb|EGB45388.1| glutamate synthase [Escherichia coli H252]
 gi|323955716|gb|EGB51474.1| glutamate synthase [Escherichia coli H263]
          Length = 659

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|51893469|ref|YP_076160.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857158|dbj|BAD41316.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 198

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C    CV VCP    Y   +N L  ++ D+C+ C  C   CP DA + + E G
Sbjct: 64  SCNHCADPACVYVCPTGAMYKRSDNGLVLVNQDDCVGCQSCVWACPYDAPQYNPEVG 120


>gi|325280681|ref|YP_004253223.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter
           splanchnicus DSM 20712]
 gi|324312490|gb|ADY33043.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter
           splanchnicus DSM 20712]
          Length = 273

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 12/55 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE----CIDCGVCEPECPVDA 54
           V T+ CI C    C +VCP+            HP E    CI C  C  +CPV A
Sbjct: 199 VTTDACIDC--RRCAKVCPMGAIRLD------HPSEVSGICIKCNACVKQCPVHA 245



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE-LWLKINS 71
           D CIDC  C   CP+ AI+ D    +  + +K N+
Sbjct: 202 DACIDCRRCAKVCPMGAIRLDHPSEVSGICIKCNA 236


>gi|291085186|ref|ZP_06570972.1| thiosulfate reductase electron transport protein phsb [Citrobacter
           youngae ATCC 29220]
 gi|291072235|gb|EFE10344.1| thiosulfate reductase electron transport protein phsb [Citrobacter
           youngae ATCC 29220]
          Length = 198

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP    +  EN +  +    CI C  C   CP 
Sbjct: 69  SCQHCEDAPCVSVCPTGASFRDENGVVQVDKSRCIGCDYCVAACPF 114


>gi|218886706|ref|YP_002436027.1| dimethylsulfoxide reductase, chain B [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757660|gb|ACL08559.1| dimethylsulfoxide reductase, chain B [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 205

 Score = 54.4 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C+   CV+ CP    ++ +N +  + P +C+ C  C   CP  A +    
Sbjct: 60  SYYLSVSCNHCEDPICVQSCPTTAMHQDKNGIVSVDPKKCVGCKYCSWGCPYGAPQYSER 119

Query: 61  PG 62
            G
Sbjct: 120 LG 121


>gi|325829783|ref|ZP_08163241.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
 gi|325487950|gb|EGC90387.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
          Length = 267

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP        N   I  D CI CG C   CP  AI
Sbjct: 217 CIGC--QKCAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAI 261



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 16/50 (32%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + DC E CP D          I    C  CG C   CP   I    +  
Sbjct: 142 GYGDCAEACPFDAIVVENGVARIDTAACTGCGTCAKICPRGIISMVDQAS 191


>gi|322613782|gb|EFY10721.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619475|gb|EFY16351.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624980|gb|EFY21809.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629577|gb|EFY26353.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633993|gb|EFY30730.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635569|gb|EFY32280.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639936|gb|EFY36610.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644377|gb|EFY40918.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652096|gb|EFY48458.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655259|gb|EFY51568.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658306|gb|EFY54572.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664306|gb|EFY60503.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669474|gb|EFY65623.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673201|gb|EFY69307.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676592|gb|EFY72660.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322683343|gb|EFY79357.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685771|gb|EFY81764.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192551|gb|EFZ77780.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199597|gb|EFZ84688.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201245|gb|EFZ86313.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208075|gb|EFZ93020.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210202|gb|EFZ95103.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217068|gb|EGA01790.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220593|gb|EGA05042.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225488|gb|EGA09719.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229243|gb|EGA13367.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235442|gb|EGA19526.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237372|gb|EGA21435.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245127|gb|EGA29128.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248830|gb|EGA32756.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253117|gb|EGA36949.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255916|gb|EGA39661.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260966|gb|EGA44563.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266402|gb|EGA49890.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269767|gb|EGA53217.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 653

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|320176287|gb|EFW51348.1| putative oxidoreductase Fe-S binding subunit [Shigella
          dysenteriae CDC 74-1112]
          Length = 606

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 47


>gi|260893278|ref|YP_003239375.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
 gi|260865419|gb|ACX52525.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
          Length = 810

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 20/80 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEG---------------ENFLAIHPDECIDCG 44
           +V ++ C+ C    C  +CPV+    F  G                    I P+ C  CG
Sbjct: 246 FVNSQKCVECG--RCAAICPVEVENDFDMGISRRKAAYKPHPMALPPGYTIDPNSCTRCG 303

Query: 45  VCEPECPVDAIKPDTEPGLE 64
            C   CP  AI     P   
Sbjct: 304 ACVGACPAQAIDLQAAPQER 323



 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           V  + C  C    C +VCP       E+      P  C  CG+C   CP  AI+
Sbjct: 607 VDPQKCSGCGF--CAKVCPHGVIQRREDGTYYTSPAFCQGCGLCTTACPTGAIR 658



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +  + P +C  CG C   CP   I+
Sbjct: 602 DYYAEVDPQKCSGCGFCAKVCPHGVIQ 628


>gi|258513534|ref|YP_003189756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257777239|gb|ACV61133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 443

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+CV+ CP +     E    I  + CIDCG C   CP  A
Sbjct: 13 DKCKGC--TNCVKRCPTEAIRVREGRALIIEERCIDCGECIKICPNRA 58



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          +  D+C  C  C   CP +AI+
Sbjct: 10 LDEDKCKGCTNCVKRCPTEAIR 31


>gi|320180448|gb|EFW55379.1| putative oxidoreductase Fe-S binding subunit [Shigella boydii
          ATCC 9905]
          Length = 606

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 47


>gi|311278308|ref|YP_003940539.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae SCF1]
 gi|308747503|gb|ADO47255.1| formate hydrogenlyase subunit 2 [Enterobacter cloacae SCF1]
          Length = 202

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAGVCPVNAITRIDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
 gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
          Length = 584

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + ENC  C    C + CPV+    E + +  +  ++CI C  C   C  +AI+
Sbjct: 533 FIEENCTKCGQ--CFKACPVEAISWEKKQYPVLDKEKCIKCKTCIDACNFEAIQ 584



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            VCP               + C  CG C   CPV+AI  + + 
Sbjct: 518 HVCP-SRVCTALIKFEFIEENCTKCGQCFKACPVEAISWEKKQ 559


>gi|296132872|ref|YP_003640119.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
          sp. JR]
 gi|296031450|gb|ADG82218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
          potens JR]
          Length = 54

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y +T+ C+ C    C++ CP     EG+  +    D C DCG C   CP  AI  +
Sbjct: 1  MAYKITDECVACG--TCLDTCPNGAIEEGD--IYKITDACADCGACAEACPTGAIVEE 54


>gi|269139191|ref|YP_003295892.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Edwardsiella tarda EIB202]
 gi|267984852|gb|ACY84681.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Edwardsiella tarda EIB202]
 gi|304559108|gb|ADM41772.1| Thiosulfate reductase electron transport protein PhsB [Edwardsiella
           tarda FL6-60]
          Length = 190

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C    CV VCP    +  +N +  +    CI C  C   CP      D   G
Sbjct: 61  SCQHCADAPCVSVCPTGASFRDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSG 116


>gi|257792587|ref|YP_003183193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488875|ref|ZP_07947405.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325832779|ref|ZP_08165542.1| electron transport protein HydN [Eggerthella sp. HGA1]
 gi|257476484|gb|ACV56804.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911949|gb|EFV33528.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485918|gb|EGC88379.1| electron transport protein HydN [Eggerthella sp. HGA1]
          Length = 208

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ VCP     +  + L +    C  C +C   CP  A+ P   
Sbjct: 51  CHQCEGAPCMTVCPEGAIVQERDRLHVDESRCTGCLLCALVCPFGAVYPSAP 102


>gi|260588669|ref|ZP_05854582.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583]
 gi|331081982|ref|ZP_08331110.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541144|gb|EEX21713.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583]
 gi|330405577|gb|EGG85107.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 374

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    C ++C  D          I+ D+C+ CG C   CP DAI   ++ 
Sbjct: 190 PHVDQNLCVGC--QMCAKICAHDAPEFENKKATINHDKCVGCGRCIGVCPKDAILSASDE 247

Query: 62  GLELWLKINSEYAT 75
             E+   +N + A 
Sbjct: 248 SNEI---LNCKIAE 258


>gi|218781106|ref|YP_002432424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfatibacillum alkenivorans AK-01]
 gi|218762490|gb|ACL04956.1| Predicted heterodisulfide reductase/ glutamate synthase fusion
            protein HdrL [Desulfatibacillum alkenivorans AK-01]
          Length = 1482

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 2    TYVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
              V  + C  C    CV  CP  V    E    + I P  C  CGVC  ECP  AI+ + 
Sbjct: 1408 AVVDQDKCASCL--ICVRSCPFGVPRIDETGKSI-IDPALCQGCGVCASECPAKAIRLNW 1464

Query: 60   EPGLE 64
                +
Sbjct: 1465 YEDEQ 1469


>gi|320354001|ref|YP_004195340.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122503|gb|ADW18049.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 266

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C   C V          +  HPD C+ C  C   CP +  K + +   
Sbjct: 73  CLHCVDPACASSCLVGALRRTPEGPVVYHPDLCVGCRYCMVACPFNIPKYEWDKSF 128


>gi|298676082|ref|YP_003727832.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methanohalobium evestigatum Z-7303]
 gi|298289070|gb|ADI75036.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalobium evestigatum Z-7303]
          Length = 58

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            +++ENC+ C    CV+ CPV+    +GEN   +   EC DCG C   CP +AI+ +
Sbjct: 3  AVIISENCVGC--ATCVDECPVEAISLDGENIAVVDEGECSDCGECVDVCPTEAIEIE 58


>gi|317153423|ref|YP_004121471.1| NIL domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943674|gb|ADU62725.1| NIL domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 146

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+CI C    C  +CP D      G   +    D+C  CG+C   CPV A+  D +  
Sbjct: 89  ESCIHCGV--CTAMCPTDALLLDPGTRLVVFDVDKCSACGMCTRVCPVKAMTLDLKDD 144



 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 36  HPDECIDCGVCEPECPVDAIKPD 58
           + + CI CGVC   CP DA+  D
Sbjct: 87  NEESCIHCGVCTAMCPTDALLLD 109


>gi|291613334|ref|YP_003523491.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583446|gb|ADE11104.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 430

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 13  KHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
               CV  CP        G+  L I+P  CI  G CE  CP DAIK
Sbjct: 59  GAGSCVAACPEGALGMINGKGTL-INPTVCIGHGACEAACPHDAIK 103


>gi|224582989|ref|YP_002636787.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467516|gb|ACN45346.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 653

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|197251269|ref|YP_002147431.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214972|gb|ACH52369.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 653

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|168235874|ref|ZP_02660932.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734890|ref|YP_002115795.1| electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194710392|gb|ACF89613.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290742|gb|EDY30096.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 181

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGA 103


>gi|268576410|ref|XP_002643185.1| Hypothetical protein CBG24154 [Caenorhabditis briggsae]
 gi|187040443|emb|CAP20828.1| hypothetical protein CBG_24154 [Caenorhabditis briggsae AF16]
          Length = 212

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 152 CIYCGL--CQEACPVDAIVEGPNFEY 175



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 111 ERCIACKLCEAICPAQAITIEAE 133


>gi|325830302|ref|ZP_08163759.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|325487769|gb|EGC90207.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 216

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y V+  C  C    CV VCP +  ++ E    ++++   CI CG C   CP  A + D
Sbjct: 60  SYNVSVACNHCDDPVCVRVCPTEAMHKDEQTGLVSVNDRHCIGCGYCHLSCPYSAPRVD 118


>gi|323977355|gb|EGB72441.1| glutamate synthase [Escherichia coli TW10509]
          Length = 659

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|323965964|gb|EGB61407.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251228|gb|EGE62921.1| protein aegA domain protein [Escherichia coli STEC_7v]
          Length = 157

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|308271190|emb|CBX27799.1| hypothetical protein N47_C18570 [uncultured Desulfobacterium sp.]
          Length = 368

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    C+  C             I   +CI CG C   C  +AI+      + ++L+
Sbjct: 195 CIGCGD--CISHCSQQAISLVNEKAVIDSTKCIGCGECILICVNEAIQIKWNQAIPVFLE 252


>gi|293392063|ref|ZP_06636397.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|290952597|gb|EFE02716.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 199

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C  + C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 51 CRHCDDSPCATVCPVHAITHEGDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|251778159|ref|ZP_04821079.1| nitroreductase family protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243082474|gb|EES48364.1| nitroreductase family protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 273

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI CK   C+  CPV      E    I  + CI CG C   CP  A+  D 
Sbjct: 1  MFEVNKEKCISCKQ--CINDCPVSDILLIEGKANIKNESCIKCGHCIAICPTKAVSTDD 57


>gi|255658479|ref|ZP_05403888.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
 gi|260849277|gb|EEX69284.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
          Length = 374

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C  C    C + C  D      N   IH D C  CG C   C  DAI+ +
Sbjct: 192 VNEELCRGC--RKCAKECGSDAITYENNKAVIHEDLCKGCGRCIGACSYDAIRNE 244


>gi|158320132|ref|YP_001512639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158140331|gb|ABW18643.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 226

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVD--CFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           ++  C  C    CV  CP++    Y+ +N + +H  + CI C  CE  CP   I  +   
Sbjct: 54  ISTLCNHCDDAPCVNACPLNPKAMYKSDNGITMHNHEACIGCRACEKACPYSVISFNETE 113

Query: 62  GLELW 66
               W
Sbjct: 114 PFGEW 118


>gi|50120807|ref|YP_049974.1| nitrite reductase complex component [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611333|emb|CAG74780.1| nitrite reductase complex component [Pectobacterium atrosepticum
           SCRI1043]
          Length = 223

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C+++ CV+VCP    F +  + +  ++PD C+ C  C   CP     I P T+   
Sbjct: 91  SCQHCENSPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYQVRFIHPQTKTAD 150

Query: 64  E 64
           +
Sbjct: 151 K 151


>gi|317490042|ref|ZP_07948533.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316910883|gb|EFV32501.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 267

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP        N   I  D CI CG C   CP  AI
Sbjct: 217 CIGC--QKCAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAI 261



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 16/50 (32%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + DC E CP D          I    C  CG C   CP   I    +  
Sbjct: 142 GYGDCAEACPFDAIVVENGVARIDTAACTGCGTCAKICPRGIISMVDQAS 191


>gi|308463017|ref|XP_003093787.1| hypothetical protein CRE_24782 [Caenorhabditis remanei]
 gi|308249393|gb|EFO93345.1| hypothetical protein CRE_24782 [Caenorhabditis remanei]
          Length = 212

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 152 CIYCGL--CQEACPVDAIVEGPNFEY 175



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 111 ERCIACKLCEAICPAQAITIEAE 133


>gi|239816784|ref|YP_002945694.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803361|gb|ACS20428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 244

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP  A + D E
Sbjct: 100 SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCAWACPYGARELDEE 154


>gi|291288005|ref|YP_003504821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885165|gb|ADD68865.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 203

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    CVEVCP     +  +    +   ECI C  C   CP  A   + E     W 
Sbjct: 57  CNHCDDAPCVEVCPTGASKKLADGTVQVTASECIGCQACMEACPYGARYFNEEEKPTYWS 116

Query: 68  K 68
           +
Sbjct: 117 E 117


>gi|168466778|ref|ZP_02700632.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195630777|gb|EDX49369.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 653

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|149246748|ref|XP_001527799.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447753|gb|EDK42141.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 246

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 145 ERCIACKL--CEAICPAQAITIEAEERADGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 201



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 126 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERAD 171



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 186 CIYCGY--CQESCPVDAIVESPNVEY 209


>gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 617

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+ +  C  C    C   CP      E +    I  ++CI CG C  +C  +AI 
Sbjct: 562 YVIDQEKCTGCG--ACARACPAGAIAGEKKQPHVIDVEKCIKCGSCIQKCKFEAIY 615



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I  ++C  CG C   CP  AI  + +   
Sbjct: 562 YVIDQEKCTGCGACARACPAGAIAGEKKQPH 592


>gi|15616781|ref|NP_239993.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133970|sp|P57259|NUOI_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282723|pir||G84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain I [imported] -
           Buchnera sp. (strain APS)
 gi|10038844|dbj|BAB12879.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 180

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKTDGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LMPDFELSDF 125


>gi|331001428|ref|ZP_08325048.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329568310|gb|EGG50121.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 238

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C+ VCPV     E +     +   +CI CG C   CP DA +   +   E
Sbjct: 105 CNHCSEPACIPVCPVKAISKEAKYGAVRVDSSKCISCGACRAACPWDAPQYYKDLQAE 162


>gi|325294618|ref|YP_004281132.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065066|gb|ADY73073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 181

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C+EVCP       E    + + P +CI C +C   CP   I  +
Sbjct: 60  CRHCNPAPCMEVCPTYAISRDEKTESVLVDPAKCIACSMCAIACPFGVITFE 111


>gi|170754223|ref|YP_001781834.1| iron-sulfur binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119435|gb|ACA43271.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 281

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C  T+C  VC  D        L I P  C  CG C   CP +AIK + E   + +
Sbjct: 65  DICIKC--TECELVCKFDAIKN----LKIDPFLCEGCGACTLICPQNAIKLEDEKTAKTF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G    +I  D CI C  CE  C  DAIK
Sbjct: 56 GGKKASIDEDICIKCTECELVCKFDAIK 83


>gi|186476850|ref|YP_001858320.1| ferredoxin [Burkholderia phymatum STM815]
 gi|184193309|gb|ACC71274.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           phymatum STM815]
          Length = 291

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I  + C  C +C P CPVD I     
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPV 137

Query: 58  -DTEPGLELWLKINSEYATQ 76
              + G + W +  +  A +
Sbjct: 138 TGDKTGWDAWTQSQANAARE 157


>gi|33594349|ref|NP_881993.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33595531|ref|NP_883174.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33599929|ref|NP_887489.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33564424|emb|CAE43733.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33565609|emb|CAE40255.1| ferredoxin [Bordetella parapertussis]
 gi|33567526|emb|CAE31439.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|332383760|gb|AEE68607.1| ferredoxin [Bordetella pertussis CS]
          Length = 83

 Score = 54.4 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE CI C    C   CP +    G ++  I PD C +C        C+  CPV+ 
Sbjct: 1  MALKITEECINCDV--CEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVEC 58

Query: 55 IK--PDTEPGLEL 65
          I+  P  + G E 
Sbjct: 59 IELHPQWQEGQEQ 71


>gi|317493927|ref|ZP_07952344.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316918254|gb|EFV39596.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 204

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C+   C +VCPV+      + + ++   C+ C +C   CP  AI
Sbjct: 51 CHQCEDAPCAQVCPVNAITHTNDSIQLNESLCVSCKLCGIACPFGAI 97


>gi|219681536|ref|YP_002467921.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682092|ref|YP_002468476.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471217|ref|ZP_05635216.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621825|gb|ACL29981.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624379|gb|ACL30534.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085903|gb|ADP65985.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086476|gb|ADP66557.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087057|gb|ADP67137.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087614|gb|ADP67693.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 180

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVDCISLQKSEKTDGRWYPKFFRINFSRCIFCGLCEEACPTAAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LMPDFELSDF 125


>gi|168261487|ref|ZP_02683460.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205349434|gb|EDZ36065.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|119094136|gb|ABL60966.1| iron-sulfur cluster-binding protein [uncultured marine bacterium
           HF10_19P19]
          Length = 669

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C++VCP        + +AI P  C  CG+C   CP  A +    P
Sbjct: 293 CLDVCPAGAIVVAGDHVAIDPAVCGGCGMCGAVCPSGAAQTAFPP 337



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           T+ C +C    CV  CP     +  +   L    D C+ CG+C   CP   I
Sbjct: 524 TDKCTICL--SCVGACPAGALQDNPDAPQLLFREDACLQCGICVATCPEKVI 573



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           I  D+C  C  C   CP  A++ + +    L+ +
Sbjct: 522 IDTDKCTICLSCVGACPAGALQDNPDAPQLLFRE 555


>gi|110678320|ref|YP_681327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseobacter denitrificans OCh 114]
 gi|109454436|gb|ABG30641.1| 4Fe-4S binding domain protein [Roseobacter denitrificans OCh 114]
          Length = 252

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEG 137


>gi|299143765|ref|ZP_07036845.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518250|gb|EFI41989.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 316

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI CK   C + CP D  +  +N   I   +CI+CG+C  +CP  AI  +    +E   +
Sbjct: 217 CIACKL--CEKNCPKDAIHVVDNLARIDYTKCINCGICVSKCPTGAIFCEYPERVEKMKE 274

Query: 69  INSEYATQ 76
                A +
Sbjct: 275 RQRLEAEK 282



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
                CV VC  D  +  +    +  ++C+ C  C   CP
Sbjct: 144 VGGGTCVTVCEFDAIHIVDGVAKVDKEKCVACKKCIEICP 183


>gi|291547662|emb|CBL20770.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus sp. SR1/5]
          Length = 287

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C + C  +     ++ L I  ++C  CG C   CPVDA
Sbjct: 164 DACIHCGV--CEKACRENAISFEDDKLVIDTEKCNYCGRCAKSCPVDA 209



 Score = 36.7 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           D CI CGVCE  C  +AI  + +
Sbjct: 164 DACIHCGVCEKACRENAISFEDD 186


>gi|261868396|ref|YP_003256318.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261413728|gb|ACX83099.1| electron transport protein HydN [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 199

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C  + C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 51 CRHCDDSPCATVCPVHAITHEGDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|238878682|gb|EEQ42320.1| NADH-ubiquinone oxidoreductase subunit 8 [Candida albicans WO-1]
          Length = 244

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 143 ERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 199



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E 
Sbjct: 124 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE 166



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 184 CIYCGY--CQESCPVDAIVETPNVEY 207


>gi|298530704|ref|ZP_07018106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510078|gb|EFI33982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 367

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C++VC        +  + + P++C+ C  C   C   A++ + E     +L+
Sbjct: 194 CQGCGL--CMQVCASGALTLVDEKVRMDPEKCVGCAACILVCKTGALQINWETEGNAFLE 251

Query: 69  INSEYATQWPNITTKKE 85
              EY+     ++ KK+
Sbjct: 252 RMMEYSAA--VLSRKKD 266


>gi|298530556|ref|ZP_07017958.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509930|gb|EFI33834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 247

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C+ C +  CV  CP    + E E  +  I+ D CI CG C   CP  A
Sbjct: 61  CMHCDNPTCVHACPSGATYKEEETGIVQINKDMCIGCGNCVVACPYSA 108


>gi|169599789|ref|XP_001793317.1| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15]
 gi|160705324|gb|EAT89451.2| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15]
          Length = 230

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI 
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAIV 186

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 187 EGP----------NAEYATE 196


>gi|119473031|ref|ZP_01614853.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
 gi|119444609|gb|EAW25921.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
          Length = 184

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|68464733|ref|XP_723444.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|68465112|ref|XP_723255.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|46445282|gb|EAL04551.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|46445478|gb|EAL04746.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
          Length = 246

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 145 ERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 201



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E 
Sbjct: 126 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE 168



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 186 CIYCGY--CQESCPVDAIVETPNVEY 209


>gi|304413378|ref|ZP_07394851.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella
           insecticola LSR1]
 gi|304284221|gb|EFL92614.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella
           insecticola LSR1]
          Length = 183

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 61  ERCVACNL--CAAVCPVDCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTLAIQ 118

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 119 LTPDFEMGEF 128


>gi|296104102|ref|YP_003614248.1| putative oxidoreductase Fe-S binding subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058561|gb|ADF63299.1| putative oxidoreductase Fe-S binding subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 658

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C++  C + CP     + ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCENAPCAQSCPNGAISKCDDSVQVNQQKCIGCKACVVACPFG 100


>gi|317053381|ref|YP_004119148.1| glutamate synthase, small subunit [Pantoea sp. At-9b]
 gi|316953120|gb|ADU72592.1| glutamate synthase, small subunit [Pantoea sp. At-9b]
          Length = 659

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + +    CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAINRIDDSVQVDQQLCIGCKSCVIACPFG 100


>gi|254487223|ref|ZP_05100428.1| 4Fe-4S binding domain protein [Roseobacter sp. GAI101]
 gi|214044092|gb|EEB84730.1| 4Fe-4S binding domain protein [Roseobacter sp. GAI101]
          Length = 221

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D
Sbjct: 54  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELD 106


>gi|323975014|gb|EGB70123.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 157

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|308152250|emb|CBI83544.1| NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase
           (complex I) [Pichia pastoris]
 gi|328353143|emb|CCA39541.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Pichia pastoris CBS
           7435]
          Length = 222

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 121 ERCIACKL--CEAVCPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAIV 178

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
            +T          N EYAT+     +  K++ L +  K +
Sbjct: 179 -ETP---------NVEYATETREELLYNKEKLLANGDKWE 208


>gi|261247679|emb|CBG25506.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|257790458|ref|YP_003181064.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
 gi|257474355|gb|ACV54675.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
          Length = 267

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP        N   I  D CI CG C   CP  AI
Sbjct: 217 CIGC--QKCAKTCPTQSITVENNLARIDTDTCIGCGTCIEVCPTHAI 261



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 16/50 (32%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + DC E CP D          I    C  CG C   CP   I    +  
Sbjct: 142 GYGDCAEACPFDAIVVENGVARIDTAACTGCGTCAKICPRGIISMVDQAS 191


>gi|226941414|ref|YP_002796488.1| DmsB [Laribacter hongkongensis HLHK9]
 gi|226716341|gb|ACO75479.1| DmsB [Laribacter hongkongensis HLHK9]
          Length = 204

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C    C +VCP     +  N    +    CI C  C+  CP  A + + +
Sbjct: 59  SYYLSVSCNHCADPACTKVCPTGAMAKDANGFVAVDDAVCIGCKSCQMACPYGAPQYNAD 118

Query: 61  PG 62
            G
Sbjct: 119 TG 120


>gi|200387321|ref|ZP_03213933.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199604419|gb|EDZ02964.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|168232025|ref|ZP_02657083.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470701|ref|ZP_03076685.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194457065|gb|EDX45904.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333637|gb|EDZ20401.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|56412638|ref|YP_149713.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361573|ref|YP_002141209.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126895|gb|AAV76401.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093049|emb|CAR58488.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|16765799|ref|NP_461414.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991782|ref|ZP_02572881.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263682|ref|ZP_03163756.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16421020|gb|AAL21373.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197241937|gb|EDY24557.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205329923|gb|EDZ16687.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|267994588|gb|ACY89473.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159031|emb|CBW18544.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913467|dbj|BAJ37441.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|323130809|gb|ADX18239.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989407|gb|AEF08390.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|115352416|ref|YP_774255.1| ferredoxin [Burkholderia ambifaria AMMD]
 gi|115282404|gb|ABI87921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ambifaria AMMD]
          Length = 339

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 112 AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIVESLCTGCDLCVPPCPVDCIAMVPV 169

Query: 58  -DTEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 170 TGERTGWDAWSQQQADAARE 189


>gi|332534029|ref|ZP_08409878.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036466|gb|EGI72934.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 184

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|260779356|ref|ZP_05888248.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605520|gb|EEX31815.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 194

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|161612772|ref|YP_001586737.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161362136|gb|ABX65904.1| hypothetical protein SPAB_00471 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|149912662|ref|ZP_01901196.1| iron-sulfur cluster-binding protein [Roseobacter sp. AzwK-3b]
 gi|149813068|gb|EDM72894.1| iron-sulfur cluster-binding protein [Roseobacter sp. AzwK-3b]
          Length = 259

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDAAEG 137


>gi|119475395|ref|ZP_01615748.1| ferredoxin [marine gamma proteobacterium HTCC2143]
 gi|119451598|gb|EAW32831.1| ferredoxin [marine gamma proteobacterium HTCC2143]
          Length = 85

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C  VCP +  Y+G+    I P  C +C        C+  CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPVCPNEAIYQGDEIYEIDPALCTECVGHFDEPQCQTVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P      E  L++ S+Y
Sbjct: 59 I-PKDPNRQESQLQLLSKY 76


>gi|78048263|ref|YP_364438.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78036693|emb|CAJ24384.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 154

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 61  MSLKINELCVNCDV--CEPACPNHAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 118

Query: 55  IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
           I PD       +  L    +     P +  ++   P
Sbjct: 119 IDPDPAIPETHDQLLAKLMQLQRDHPELYEQEPPAP 154


>gi|332999468|gb|EGK19053.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 203

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|320185160|gb|EFW59940.1| putative oxidoreductase Fe-S binding subunit [Shigella flexneri
          CDC 796-83]
          Length = 532

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 77


>gi|303256812|ref|ZP_07342826.1| molybdopterin oxidoreductase [Burkholderiales bacterium 1_1_47]
 gi|302860303|gb|EFL83380.1| molybdopterin oxidoreductase [Burkholderiales bacterium 1_1_47]
          Length = 253

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPV 52
           C  C++  CV+VCP    +     + +H DE CI C +C+  CP 
Sbjct: 62  CNHCENPQCVKVCPTGAMFISPEGVVLHNDEACIGCRLCQNACPY 106


>gi|194443862|ref|YP_002041738.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194402525|gb|ACF62747.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|168243251|ref|ZP_02668183.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447960|ref|YP_002046542.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194406264|gb|ACF66483.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337676|gb|EDZ24440.1| glutamate synthase, small subunit subfamily [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|172061288|ref|YP_001808940.1| ferredoxin [Burkholderia ambifaria MC40-6]
 gi|171993805|gb|ACB64724.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ambifaria MC40-6]
          Length = 341

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 112 AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIVESLCTGCDLCVPPCPVDCIAMVPV 169

Query: 58  -DTEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 170 TGERTGWDAWSQQQADAARE 189


>gi|104780426|ref|YP_606924.1| lectron transport complex protein RnfB [Pseudomonas entomophila
           L48]
 gi|95109413|emb|CAK14113.1| putative lectron transport complex protein RnfB [Pseudomonas
           entomophila L48]
          Length = 254

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            CI C  T C++ CPVD        +  +   EC  C +C P CPVD I
Sbjct: 80  ECIGC--TKCIQACPVDAIVGASKLMHTVIAIECTGCDLCLPACPVDCI 126



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I   ECI C  C   CPVDAI
Sbjct: 76 IREAECIGCTKCIQACPVDAI 96


>gi|49082640|gb|AAT50720.1| PA3490 [synthetic construct]
          Length = 189

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+  + 
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMREI 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           P+D   E       I   ECI C  C   CPVDAI
Sbjct: 94  PLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 597

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++ + C  C    C++VCP             I  D+CI C  C   CP  AI
Sbjct: 544 IIADKCKGCG--MCLKVCPTQAISGERRQPHKIDTDKCIKCNSCFDRCPFGAI 594



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +      I  D+C  CG+C   CP  AI  +     +
Sbjct: 531 CPAGA-CKALVHYEIIADKCKGCGMCLKVCPTQAISGERRQPHK 573


>gi|332089785|gb|EGI94886.1| protein aegA [Shigella dysenteriae 155-74]
          Length = 578

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 3  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 47


>gi|306820550|ref|ZP_07454183.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551464|gb|EFM39422.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 314

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            Y   E CI C    CV++CP  C    ++ +  + DECI C  C   CP  A
Sbjct: 237 PYTDKEKCINC--YKCVKICPKSCI---DDKIMTNRDECIVCMACVKICPTCA 284


>gi|301024682|ref|ZP_07188328.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300396463|gb|EFJ80001.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 218

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C++VC V+   + ++ + ++   CI C +C   CP  AI
Sbjct: 64  CHHCEEAPCLQVCLVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAI 110


>gi|170701091|ref|ZP_02892067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria IOP40-10]
 gi|170133992|gb|EDT02344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria IOP40-10]
          Length = 88

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MSLMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
            YV+  E C  C    CV+ CP      G++ +  I  ++C  CG C   CP
Sbjct: 561 AYVIDPEQCRAC--QLCVKKCPAGAIDGGKDLISVIDQEKCTKCGTCFEVCP 610



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP   F +      I P++C  C +C  +CP  AI
Sbjct: 551 CPA-LFCKALIAYVIDPEQCRACQLCVKKCPAGAI 584


>gi|295103391|emb|CBL00935.1| Fe-S-cluster-containing hydrogenase components 1 [Faecalibacterium
           prausnitzii SL3/3]
          Length = 214

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C  C+   C   CP          +  +  D+CI CG C   CP
Sbjct: 119 DTCRQCEDPACGNACPQKAITTDSRGIRVVDTDKCIGCGACHDACP 164



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCGVCEPECPVDA 54
           V T+ CI C    C + CP        +   ++P+     +CI CG C   CP  A
Sbjct: 148 VDTDKCIGCG--ACHDACPW-------HMPTVNPETGKSSKCIACGACVAGCPSGA 194


>gi|242398680|ref|YP_002994104.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
 gi|242265073|gb|ACS89755.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
          Length = 295

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           +E CI C    C E CP DC    +    ++   C  CGVC   CPV+
Sbjct: 68  SETCIKCG--ICAERCPYDCIKILDENYVVNELTCEGCGVCRLVCPVN 113



 Score = 40.1 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          G     I+ + CI CG+C   CP D IK   E
Sbjct: 60 GAKVAKINSETCIKCGICAERCPYDCIKILDE 91


>gi|157376694|ref|YP_001475294.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319068|gb|ABV38166.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 231

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C+   CV+VCP    + + E  +  ++PD+C+ C  C   CP  
Sbjct: 99  SCQHCEDAPCVKVCPTGAAYIDSETGIVGVNPDKCVGCQYCIAACPYQ 146


>gi|153207582|ref|ZP_01946265.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212217980|ref|YP_002304767.1| electron transport complex protein [Coxiella burnetii CbuK_Q154]
 gi|120576550|gb|EAX33174.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212012242|gb|ACJ19622.1| electron transport complex protein [Coxiella burnetii CbuK_Q154]
          Length = 213

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   C+  CPVDC 
Sbjct: 110 MHTVITDACTGCEL--CLPPCPVDCI 133


>gi|332087445|gb|EGI92573.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 203

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCEVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|325578553|ref|ZP_08148653.1| hydrogenase-4 component A [Haemophilus parainfluenzae ATCC 33392]
 gi|325159789|gb|EGC71919.1| hydrogenase-4 component A [Haemophilus parainfluenzae ATCC 33392]
          Length = 214

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C  + C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 66  CRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAI 112


>gi|311697015|gb|ADP99888.1| protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup
           domains [marine bacterium HP15]
          Length = 637

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T C++VCP +  +   + + I  D C  CG C   CP  A+  +  P
Sbjct: 270 TRCLDVCPTEAIFSFGDHIQIDSDICAGCGSCAAVCPTSAVTMNETP 316



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           ++ C LC    CV +CP     +  +   +    + C+ CG+CE  CP  AI
Sbjct: 490 SDKCTLCL--ACVSLCPTGALGDHPDRPEVQFTENACVQCGICESTCPETAI 539



 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           + I  D+C  C  C   CP  A+    +     + + N+
Sbjct: 486 IEIDSDKCTLCLACVSLCPTGALGDHPDRPEVQFTE-NA 523


>gi|218779007|ref|YP_002430325.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760391|gb|ACL02857.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 362

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + CI C   +C++ C V       +   I  + CI CG C   CP +AI
Sbjct: 293 GDLCIGCG--ECLDRCQVAAISLDGDAAVIAGEYCIGCGNCATVCPQEAI 340



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D CI CG C   C V AI  D +  
Sbjct: 291 IDGDLCIGCGECLDRCQVAAISLDGDAA 318


>gi|206891168|ref|YP_002247862.1| tetrathionate reductase, subunit B [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743106|gb|ACI22163.1| tetrathionate reductase, subunit B [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 256

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCPV   F   +         CI C  C   CP  A   +  P  +   
Sbjct: 119 CNHCDNAPCVRVCPVKATFKRADGITMQDMHRCIGCKFCMAGCPYGARNYNFLPPRDYIK 178

Query: 68  KINSEYATQWPNITTKK 84
           ++N EY T+   +  K 
Sbjct: 179 ELNPEYPTRTIGVVEKC 195


>gi|150019920|ref|YP_001305274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermosipho melanesiensis BI429]
 gi|149792441|gb|ABR29889.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosipho melanesiensis BI429]
          Length = 97

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M ++   +CI CK   CV VCPV+     + + F  I+ + C  CG+C  +CP +AI+P+
Sbjct: 1  MPWIRESDCIKCKF--CVNVCPVEGAIIMKEDGFPYINNEICTRCGLCMEKCPKNAIRPN 58

Query: 59 TE 60
           E
Sbjct: 59 YE 60


>gi|118602190|ref|YP_903405.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567129|gb|ABL01934.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 179

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++VCPVD F      +   I  DEC  C +C P CPVD I 
Sbjct: 118 CIGC--TLCIQVCPVDAFLGASKMMTQVII-DECTGCDLCIPVCPVDCIH 164



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY 27
           MT V+ + C  C    C+ VCPVDC +
Sbjct: 140 MTQVIIDECTGCDL--CIPVCPVDCIH 164


>gi|17555194|ref|NP_498595.1| hypothetical protein T20H4.5 [Caenorhabditis elegans]
 gi|3929363|sp|Q22619|NDUS8_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|4972961|gb|AAD34863.1|AF140272_1 NADH oxidoreductase complex I 23.8 kDa subunit [Caenorhabditis
           elegans]
 gi|459011|gb|AAA50662.1| Hypothetical protein T20H4.5 [Caenorhabditis elegans]
          Length = 212

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 152 CIYCGL--CQEACPVDAIVEGPNFEY 175



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 111 ERCIACKLCEAICPAQAITIEAE 133


>gi|323142517|ref|ZP_08077333.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322412950|gb|EFY03853.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 278

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C  T C + CP+      E    I    CI CG C   CP  AI
Sbjct: 222 ACIGC--TKCAQNCPMRAITMHERQATIDRRLCIICGKCAHGCPKQAI 267



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)

Query: 17  CVEVCPVD----------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ +CPV            F  G   + +  + CI C  C   CP+ AI
Sbjct: 190 CLFICPVGTYNSLFHIFGRFVPGAFAMQVRKNACIGCTKCAQNCPMRAI 238


>gi|213420835|ref|ZP_03353901.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 169

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 100 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 158


>gi|167851341|ref|ZP_02476849.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei B7210]
          Length = 296

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|165918320|ref|ZP_02218406.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 334]
 gi|165917970|gb|EDR36574.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 334]
          Length = 213

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   C+  CPVDC 
Sbjct: 110 MHTVITDACTGCEL--CLPPCPVDCI 133


>gi|34557118|ref|NP_906933.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Wolinella succinogenes DSM 1740]
 gi|34482833|emb|CAE09833.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Wolinella succinogenes]
          Length = 187

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            +   C  C++  C EVCP +  Y  E     + P +CI C  C   CP DA   D
Sbjct: 59  FIPSQCQHCENAPCQEVCPTNATYYDERGFVSVDPKKCIMCTYCMTACPYDARYVD 114


>gi|303327190|ref|ZP_07357632.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
          sp. 3_1_syn3]
 gi|302863178|gb|EFL86110.1| putative pyruvate formate-lyase activating enzyme [Desulfovibrio
          sp. 3_1_syn3]
          Length = 297

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C   CP       +  LAI  D+C  CG+C   CP  A++
Sbjct: 54 CVGCG--SCASACPKGLIAMRDGSLAIERDQCDACGLCAAACPSTALR 99


>gi|291276488|ref|YP_003516260.1| putative ferredoxin [Helicobacter mustelae 12198]
 gi|290963682|emb|CBG39514.1| putative ferredoxin [Helicobacter mustelae 12198]
          Length = 83

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++ E CI C    C E CP     EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLIDEECIACD--ACREECPNSAIEEGDPIYMIDPDLCTECVGFYDEPSCVAVCPVDA 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|289807490|ref|ZP_06538119.1| tetrathionate reductase subunit B [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 168

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
          C  C +  CV VCPV   ++ E+ + +     C+ C  C   CP DA  I  +T+   +
Sbjct: 24 CNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQTADK 82


>gi|218702339|ref|YP_002409968.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI39]
 gi|218372325|emb|CAR20193.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI39]
          Length = 157

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|197285164|ref|YP_002151036.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227355594|ref|ZP_03839989.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
 gi|194682651|emb|CAR42772.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227164390|gb|EEI49279.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
          Length = 208

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +NCI C  T C++ CPVD        +  I  D C  C +C P CP D I
Sbjct: 115 DNCIGC--TKCIQACPVDAIVGATRAMHTIIEDLCTGCDLCVPPCPTDCI 162



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D CI C  C   CPVDAI
Sbjct: 112 IDEDNCIGCTKCIQACPVDAI 132


>gi|168817770|ref|ZP_02829770.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344958|gb|EDZ31722.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086970|emb|CBY96740.1| putative oxidoreductase, Fe-S subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|167835372|ref|ZP_02462255.1| ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 87

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I PD+C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPDKCTECVGHFDGPQCQQVCPVEC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPRDPD 64


>gi|15644044|ref|NP_229093.1| ferredoxin [Thermotoga maritima MSB8]
 gi|170289313|ref|YP_001739551.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermotoga sp. RQ2]
 gi|4981847|gb|AAD36363.1|AE001784_5 ferredoxin [Thermotoga maritima MSB8]
 gi|170176816|gb|ACB09868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
          sp. RQ2]
          Length = 95

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 5  VTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          V   C+ C   +CV+VCPV+           I   +CI CG C   CPV AI+P+ E
Sbjct: 4  VNSKCVGCG--NCVKVCPVEGAIRIENGKAVIDNYKCIRCGKCFDACPVGAIRPNYE 58


>gi|262402645|ref|ZP_06079206.1| electron transport complex protein RnfB [Vibrio sp. RC586]
 gi|262351427|gb|EEZ00560.1| electron transport complex protein RnfB [Vibrio sp. RC586]
          Length = 195

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   L  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKALHTVIKNECTGCDLCVAPCPTDCIEMIPI 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|260170367|ref|ZP_05756779.1| flavodoxin [Bacteroides sp. D2]
 gi|315918726|ref|ZP_07914966.1| flavodoxin [Bacteroides sp. D2]
 gi|313692601|gb|EFS29436.1| flavodoxin [Bacteroides sp. D2]
          Length = 267

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIK 56
           T  CI C    C++ CP++ F   +N    L +    CI CG CE ECP DA+ 
Sbjct: 188 TSRCIACG--KCMKSCPMNVFTLKDNAKTPLPVDEMNCIMCGKCEKECPADAVF 239


>gi|238913616|ref|ZP_04657453.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|218190496|gb|EEC72923.1| hypothetical protein OsI_06764 [Oryza sativa Indica Group]
          Length = 669

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 4  VVTEN-CI--LCKHTDCVEVCPVD-----CFYEGENFLA--IHPDECIDCGVCEPECPVD 53
          VVTE+ C    C    C + CPV+     C     +     I  + CI CG+C   CP D
Sbjct: 13 VVTEDRCRPSKCGQQ-CRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCPFD 71

Query: 54 AIK 56
          AI+
Sbjct: 72 AIQ 74


>gi|160935009|ref|ZP_02082395.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
 gi|156866462|gb|EDO59834.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
          Length = 431

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C+ C  T+C++ CP +     E    I  + CIDCG C   CP  A
Sbjct: 6  DKCLGC--TNCIKRCPTEAIRVREGKAQIISERCIDCGECIRVCPHHA 51



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          + +  D+C+ C  C   CP +AI+
Sbjct: 1  MTLDKDKCLGCTNCIKRCPTEAIR 24


>gi|159903401|ref|YP_001550745.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
 gi|159888577|gb|ABX08791.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
          Length = 73

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPV- 52
          M + +  + I      C + CPV+C   G+       N+  I  + CIDCGVC   CPV 
Sbjct: 1  MPHTIVSD-ICEGVASCFQACPVECIKPGQGGNMKGTNYYYIDFNTCIDCGVCLEVCPVK 59

Query: 53 DAIKPDTEPGLE 64
           A+  +  P L+
Sbjct: 60 GAVIAEERPDLQ 71


>gi|257790263|ref|YP_003180869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|325830362|ref|ZP_08163819.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257474160|gb|ACV54480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
 gi|325487829|gb|EGC90267.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 394

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C +VC   C    +N L I P+ CI CG C   CP  A++       EL
Sbjct: 37 MKCADVCTSGCISYDDNELVIEPERCIGCGTCATVCPTCALEAHRPNDAEL 87



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 3   YVVTEN--CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+ +   C  C    C   CP          +G   +   P +C+ C  C   CP  A+
Sbjct: 287 HVIIDPEKCSSC--QMCATFCPTGAIAKYAGEDGSIGVTHRPVDCVKCRCCTDICPEGAL 344

Query: 56  KPDTE 60
           +   E
Sbjct: 345 ELSDE 349


>gi|242281199|ref|YP_002993328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124093|gb|ACS81789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 428

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFY------EGEN----FLAIHPDECIDCGVCEPECPVDAIKP 57
           +C  C    C   CP+D          G      F  I+ + C+ CGVC  +CP  A++ 
Sbjct: 293 DCNGCG--KCARACPIDAITMHKENVPGAEKPRRFAEINKNICLGCGVCALKCPTGALQM 350

Query: 58  DTEP 61
           D   
Sbjct: 351 DKRE 354


>gi|188584735|ref|YP_001916280.1| Fe-S cluster domain protein [Natranaerobius thermophilus
          JW/NM-WN-LF]
 gi|179349422|gb|ACB83692.1| Fe-S cluster domain protein [Natranaerobius thermophilus
          JW/NM-WN-LF]
          Length = 460

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E+CI C H  C++ CP            I  + CIDCG C   CP +A
Sbjct: 13 ESCIGCVH--CLKFCPTQAIRIKGGRAEILKERCIDCGGCIQICPNNA 58


>gi|319428322|gb|ADV56396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 553

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALSSYLNKIISRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|94269003|ref|ZP_01291347.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93451383|gb|EAT02241.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 265

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   C  C +  CV  CP    F + +  +A+    CI C  C   CP  A   +     
Sbjct: 122 VLNLCNHCDNPPCVRACPTKATFKKADGVVAMDYHRCIGCRFCMAACPYGARSFNWREPR 181

Query: 64  ELWLKINSEYATQWPNITTKK 84
               +IN +Y  +   +  K 
Sbjct: 182 HHIREINPDYPARTIGVVEKC 202


>gi|146291447|ref|YP_001181871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563137|gb|ABP74072.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 553

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALSSYLNKIISRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|320179068|gb|EFW54027.1| NrfC protein [Shigella boydii ATCC 9905]
          Length = 223

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|308270558|emb|CBX27170.1| hypothetical protein N47_A11990 [uncultured Desulfobacterium sp.]
          Length = 263

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  CK   CV  CP    F + +  +A+    CI C  C   CP  +   +         
Sbjct: 126 CNQCKDAPCVRACPTKATFKQADGIVAMDFHRCIGCRFCMAACPYGSRSFNFRDPRPFVK 185

Query: 68  KINSEYATQWPNITTKK 84
           +IN ++ T+   +  K 
Sbjct: 186 EINKKFPTRARGVVEKC 202


>gi|302339910|ref|YP_003805116.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          smaragdinae DSM 11293]
 gi|301637095|gb|ADK82522.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          smaragdinae DSM 11293]
          Length = 702

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 9  CILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEP 61
          C+ C    C+  CPV  C     + + IH D CI CG C   C  +A  +  DTE 
Sbjct: 16 CVNC--HACIAACPVKYCIDGSGSTVTIHHDLCIGCGKCIEACTHNARSVVDDTEA 69



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 35 IHPDECIDCGVCEPECPV 52
          I   +C++C  C   CPV
Sbjct: 11 IDESKCVNCHACIAACPV 28


>gi|294494958|ref|YP_003541451.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
 gi|292665957|gb|ADE35806.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
          Length = 285

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    CV+ C      EG     I P  C  CGVCE  CP DA+  +     E +
Sbjct: 66  ELCTGCG--ICVDHCRFGAIKEG---FEIDPYICEGCGVCEYVCPADAVTMEYNKCGEAY 120



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 35 IHPDECIDCGVCEPECPVDAIKP 57
          IHP+ C  CG+C   C   AIK 
Sbjct: 63 IHPELCTGCGICVDHCRFGAIKE 85


>gi|237732063|ref|ZP_04562544.1| thiosulfate reductase electron transporter PhsB [Citrobacter sp.
           30_2]
 gi|226907602|gb|EEH93520.1| thiosulfate reductase electron transporter PhsB [Citrobacter sp.
           30_2]
          Length = 192

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP    +  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCEDAPCVSVCPTGASFRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|207857890|ref|YP_002244541.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709693|emb|CAR34043.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 653

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|164686673|ref|ZP_02210701.1| hypothetical protein CLOBAR_00268 [Clostridium bartlettii DSM
           16795]
 gi|164604063|gb|EDQ97528.1| hypothetical protein CLOBAR_00268 [Clostridium bartlettii DSM
           16795]
          Length = 184

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP D      N + +   +CI C  C   CP+ AI
Sbjct: 59  CRQCEDAPCAKACPQDAISRKNNAIIVDQKKCIGCKNCMLACPLGAI 105


>gi|54301686|ref|YP_131679.1| putative tetrathionate reductase, subunit B [Photobacterium
           profundum SS9]
 gi|46915106|emb|CAG21879.1| putative tetrathionate reductase, subunit B [Photobacterium
           profundum SS9]
          Length = 222

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV+VCPV   Y+ E+ +  +    C+ C  C   CP DA
Sbjct: 110 CNHCDNPPCVKVCPVQATYQREDGIVMVDNKRCVACAYCVQACPYDA 156


>gi|15598686|ref|NP_252180.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAO1]
 gi|107103020|ref|ZP_01366938.1| hypothetical protein PaerPA_01004089 [Pseudomonas aeruginosa PACS2]
 gi|218890265|ref|YP_002439129.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           LESB58]
 gi|254242171|ref|ZP_04935493.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|17369007|sp|Q9HYB9|RNFB_PSEAE RecName: Full=Electron transport complex protein rnfB
 gi|226735423|sp|B7UWJ3|RNFB_PSEA8 RecName: Full=Electron transport complex protein rnfB
 gi|9949636|gb|AAG06878.1|AE004770_3 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|126195549|gb|EAZ59612.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|218770488|emb|CAW26253.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 188

 Score = 54.0 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+  + 
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMREI 163

Query: 60  EPGLELW 66
              +  W
Sbjct: 164 PDDVRHW 170



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           P+D   E       I   ECI C  C   CPVDAI
Sbjct: 94  PLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|310826460|ref|YP_003958817.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
 gi|308738194|gb|ADO35854.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
          Length = 452

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          Y+  + C+ C  T C+  CP       E    I   +CIDCG C   CP  A    T+P
Sbjct: 9  YLDKDKCLGC--TTCLRSCPTGAIRVREGKAKIIESKCIDCGECIRVCPHHAKMAKTDP 65



 Score = 37.1 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          + +  D+C+ C  C   CP  AI+
Sbjct: 8  VYLDKDKCLGCTTCLRSCPTGAIR 31


>gi|331675602|ref|ZP_08376349.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA280]
 gi|331067210|gb|EGI38618.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA280]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|303247436|ref|ZP_07333708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302491132|gb|EFL51024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 266

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V + C  C    CV  CPV C +  ++ +      CI C  C   CP  A
Sbjct: 189 TVADECERCGQ--CVTACPVGCVHLEDSGVVTDKAACIRCCACVKGCPTGA 237



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 38  DECIDCGVCEPECPVDAIKPDT 59
           DEC  CG C   CPV  +  + 
Sbjct: 192 DECERCGQCVTACPVGCVHLED 213


>gi|301156226|emb|CBW15697.1| predicted iron-sulfur protein [Haemophilus parainfluenzae T3T1]
          Length = 197

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP D I
Sbjct: 102 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCI 154



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 18  VEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           V+V  +D   E E  +  I  + CI C  C   CPVDAI
Sbjct: 86  VDVPAMDDVAEPEEMVAFIDENMCIGCTKCIQACPVDAI 124


>gi|300937183|ref|ZP_07152035.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300457737|gb|EFK21230.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 157

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|260432364|ref|ZP_05786335.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416192|gb|EEX09451.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 249

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDAAAG 137


>gi|254571471|ref|XP_002492845.1| hypothetical protein [Pichia pastoris GS115]
 gi|238032643|emb|CAY70666.1| Hypothetical protein PAS_chr3_0619 [Pichia pastoris GS115]
          Length = 211

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 110 ERCIACKL--CEAVCPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAIV 167

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
            +T          N EYAT+     +  K++ L +  K +
Sbjct: 168 -ETP---------NVEYATETREELLYNKEKLLANGDKWE 197


>gi|163732626|ref|ZP_02140071.1| 4Fe-4S binding domain protein [Roseobacter litoralis Och 149]
 gi|161393986|gb|EDQ18310.1| 4Fe-4S binding domain protein [Roseobacter litoralis Och 149]
          Length = 252

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWACPYGARELDQAEG 137


>gi|119505634|ref|ZP_01627705.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
 gi|119458577|gb|EAW39681.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
          Length = 200

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIADECTGCDLCVEPCPVDCI 166



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 14/26 (53%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
            N   I  DECI C  C   CPVDAI
Sbjct: 111 PNVAYIREDECIGCTKCIQACPVDAI 136



 Score = 33.6 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF 32
           M  V+ + C  C    CVE CPVDC       
Sbjct: 143 MHTVIADECTGCDL--CVEPCPVDCIDMLPRK 172


>gi|109947128|ref|YP_664356.1| hypothetical protein Hac_0535 [Helicobacter acinonychis str.
          Sheeba]
 gi|109714349|emb|CAJ99357.1| fdx [Helicobacter acinonychis str. Sheeba]
          Length = 83

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYYDEPSCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|73532680|dbj|BAE19898.1| tetrathionate reductase subunit B [Edwardsiella tarda]
          Length = 188

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCPV   Y+ ++ +  +    C+ C  C   CP DA
Sbjct: 61  CNHCENPPCVAVCPVQATYQRDDGIVMVDNRRCVGCAYCIQACPYDA 107


>gi|329765826|ref|ZP_08257392.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137669|gb|EGG41939.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 595

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 1  MTYVVT----ENCI--LCKHTDCVEVCPV-----DCF--YEGENFLAIHPDECIDCGVCE 47
          MT+ V     E C    C   +C++ CPV     DC    E      I  + C  CG+C 
Sbjct: 1  MTHRVAVLDKELCQPKKCG-LECIKYCPVNKSGADCIILNEESKKAQIDENVCNGCGICV 59

Query: 48 PECPVDAI 55
            CP +AI
Sbjct: 60 KVCPFEAI 67


>gi|171060171|ref|YP_001792520.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Leptothrix cholodnii SP-6]
 gi|170777616|gb|ACB35755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
          cholodnii SP-6]
          Length = 90

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T  CI C    C   CP      GE++  I P  C +C        C   CPV+ 
Sbjct: 1  MALIITSECINCDV--CEPECPNQAISMGEDYYVIDPARCTECVGHFGEPQCVQVCPVEC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P     +E   ++  +Y
Sbjct: 59 I-PVDPAHVETHQQLERKY 76


>gi|168263386|ref|ZP_02685359.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347881|gb|EDZ34512.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    + +  N +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPY 137


>gi|119871780|ref|YP_929787.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673188|gb|ABL87444.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 232

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C+   C+EVCP    Y+ +  +  I  D+CI C  C   CP  
Sbjct: 69  CNHCEKAPCLEVCPTQATYKTKEGIVLIDKDKCIGCRYCIMACPYG 114


>gi|319945304|ref|ZP_08019566.1| ferredoxin [Lautropia mirabilis ATCC 51599]
 gi|319741874|gb|EFV94299.1| ferredoxin [Lautropia mirabilis ATCC 51599]
          Length = 109

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +    G  +  I P+ C +C        C   CPV+ 
Sbjct: 1  MALIITDECINCD--CCEPECPNEAISMGPEYYIIDPNRCTECVGHFDEPQCAQICPVEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|308272002|emb|CBX28610.1| hypothetical protein N47_G39340 [uncultured Desulfobacterium sp.]
          Length = 1018

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDC---FYEGENFL----AIHPDECIDCGVCEPECPVDAIK 56
            V+   C  C    CV +CP        E   F      I+P  C  CG+C   C   AI+
Sbjct: 945  VIPAACSSCGV--CVSICPYSAPSFIEETARFFPGKANINPALCKGCGLCVASCRSGAIR 1002

Query: 57   PDTEPGLELWLKI 69
                   +++ +I
Sbjct: 1003 LKGFDNDQIFAQI 1015



 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------------IHPDECI--- 41
           YV    CI C    C E CP     E +  L+                  I PD C+   
Sbjct: 111 YVDMNKCIACGL--CAEKCPKKVINEYDGSLSKRKAIYVKYAQAVPLKYAIDPDNCLFLT 168

Query: 42  --DCGVCEPECPVDAIKPDTEPGL 63
              C  CE  CP DAI  D +P  
Sbjct: 169 KGKCRACEKFCPADAINFDDQPKD 192



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP 78
            +  ++CI CG+C  +CP   I  + +  L     I  +YA   P
Sbjct: 111 YVDMNKCIACGLCAEKCPKKVIN-EYDGSLSKRKAIYVKYAQAVP 154


>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
 gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
          Length = 595

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           +++ + CI C    C   CPV         L  I  D CI CG C   C  DA+ 
Sbjct: 541 HILADKCIGCGV--CARKCPVHAINGERRQLHEIDHDICIKCGECYKACKFDAVY 593



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I  D+CI CGVC  +CPV AI  +     E
Sbjct: 540 YHILADKCIGCGVCARKCPVHAINGERRQLHE 571


>gi|292491704|ref|YP_003527143.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580299|gb|ADE14756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 557

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV VCP     +G     L      C+ CGVC+  CP DAI
Sbjct: 433 QTCTLCL--ACVSVCPASALLDGGERPQLRFIEANCVQCGVCQAACPEDAI 481



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+E CP        + + ++P  C   G C   CP  AI        EL
Sbjct: 204 CLEACPTLAITSVGDKIQVNPYLCQGGGSCTAACPTGAITYAYPTVDEL 252



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 15/54 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA----------IHPDE---CIDCG 44
            +  NC+ C    C   CP D        +           ++ +E   CI+CG
Sbjct: 461 FIEANCVQCGV--CQAACPEDAIALSPRMVYESIRNRETRVLNEEEPFACIECG 512



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +    C  C  C   CP  A+    E     +++ N
Sbjct: 430 VDRQTCTLCLACVSVCPASALLDGGERPQLRFIEAN 465


>gi|251792885|ref|YP_003007611.1| electron transport protein HydN [Aggregatibacter aphrophilus
          NJ8700]
 gi|247534278|gb|ACS97524.1| electron transport protein HydN [Aggregatibacter aphrophilus
          NJ8700]
          Length = 199

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C  + C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 51 CRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|160944511|ref|ZP_02091739.1| hypothetical protein FAEPRAM212_02024 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444293|gb|EDP21297.1| hypothetical protein FAEPRAM212_02024 [Faecalibacterium prausnitzii
           M21/2]
          Length = 217

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C  C+   C   CP          +  +  D+CI CG C   CP
Sbjct: 122 DTCRQCEDPACGNACPQKAITTDSRGIRVVDTDKCIGCGACHDACP 167



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCGVCEPECPVDA 54
           V T+ CI C    C + CP        +   ++P+     +CI CG C   CP  A
Sbjct: 151 VDTDKCIGCG--ACHDACPW-------HMPTVNPETGKSSKCIACGACVAGCPSGA 197


>gi|225428485|ref|XP_002284290.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741457|emb|CBI32588.3| unnamed protein product [Vitis vinifera]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEERED 148



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNF 184


>gi|120600652|ref|YP_965226.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560745|gb|ABM26672.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 553

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + I P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEIDPYLCHGAGSCTSACPTGAISYDLPTPQALSSYLNKIISRF 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMSLQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469


>gi|319639534|ref|ZP_07994281.1| ferredoxin [Neisseria mucosa C102]
 gi|317399105|gb|EFV79779.1| ferredoxin [Neisseria mucosa C102]
          Length = 83

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I  D E   E + ++ ++Y
Sbjct: 59 ILIDEEHP-ETYEELMAKY 76


>gi|237752866|ref|ZP_04583346.1| ferredoxin [Helicobacter winghamensis ATCC BAA-430]
 gi|229375133|gb|EEO25224.1| ferredoxin [Helicobacter winghamensis ATCC BAA-430]
          Length = 83

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEECIACD--ACREECPNEAIEEGDPYYIIDPERCTECFGFYDEPACLSVCPVDA 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IISDPD 64


>gi|242309040|ref|ZP_04808195.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
 gi|239524464|gb|EEQ64330.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
          Length = 83

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEKCIACD--ACREECPNEAIEEGDPYYIIDPERCTECYGFYDEPACLSVCPVDA 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IVSDPD 64


>gi|71065158|ref|YP_263885.1| NADH dehydrogenase subunit I [Psychrobacter arcticus 273-4]
 gi|110287768|sp|Q4FU57|NUOI_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71038143|gb|AAZ18451.1| NADH dehydrogenase I, subunit I [Psychrobacter arcticus 273-4]
          Length = 182

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  +  +++ +  Y  +   I+   +   
Sbjct: 118 MTPDFEMSEYVRQDLVYEKEHLLISGPGKYPD 149


>gi|46200681|ref|ZP_00207795.1| COG0369: Sulfite reductase, alpha subunit (flavoprotein)
          [Magnetospirillum magnetotacticum MS-1]
          Length = 393

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CPVD          +  D+C  C  C   CP  AI
Sbjct: 14 CIRCN--TCEEACPVDAITHDGTNYVVSFDKCTGCRTCVSPCPTGAI 58



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 16/32 (50%)

Query: 27 YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E +    I P  CI C  CE  CPVDAI  D
Sbjct: 1  MELKRQHLIDPVVCIRCNTCEEACPVDAITHD 32


>gi|315186450|gb|EFU20210.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta
           thermophila DSM 6578]
          Length = 289

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV--DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV+VC           N   I P +CI CG C  ECP  AI
Sbjct: 223 ACIGCG--KCVKVCETVTQAITLEHNLAYIDPVKCIACGKCVAECPTGAI 270



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 14  HTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           + DC E CP D            +  ++C  CGVC   CP
Sbjct: 148 YGDCAEACPFDAISMDPVTGLPVVDEEKCTACGVCVEVCP 187


>gi|307718964|ref|YP_003874496.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM
           6192]
 gi|306532689|gb|ADN02223.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM
           6192]
          Length = 289

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV--DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV+VC           N   I P +CI CG C  ECP  AI
Sbjct: 223 ACIGCG--KCVKVCETVTQAITLEHNLAYIDPVKCIACGKCVAECPTGAI 270



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 14  HTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           + DC E CP D            +  ++C  CGVC   CP
Sbjct: 148 YGDCAEACPFDAISMDPVTGLPVVDEEKCTACGVCVEVCP 187


>gi|225181373|ref|ZP_03734817.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225167954|gb|EEG76761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 54

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          MTY +T+ C+ C    C++ CP D   EG+  +    D+C +CG+C  ECP DAI  +
Sbjct: 1  MTYKITDECVACG--ACLDSCPSDAIVEGD--VYTINDDCAECGLCVDECPSDAIIEE 54


>gi|187251162|ref|YP_001875644.1| putative PAS/PAC sensor protein [Elusimicrobium minutum Pei191]
 gi|186971322|gb|ACC98307.1| Putative PAS/PAC sensor protein [Elusimicrobium minutum Pei191]
          Length = 559

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          NC  C    C+  CPV       N   I  DECI CG C   CP  A  I+ D E
Sbjct: 11 NCKNC--YKCIRHCPVKSIRVSGNQAHIINDECILCGQCFVVCPQGAKQIESDIE 63


>gi|148380175|ref|YP_001254716.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934264|ref|YP_001384474.1| iron-sulfur binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936550|ref|YP_001387990.1| iron-sulfur binding protein [Clostridium botulinum A str. Hall]
 gi|148289659|emb|CAL83763.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|152930308|gb|ABS35808.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932464|gb|ABS37963.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str.
           Hall]
          Length = 281

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C  T+C  VC  D        L I P  C  CG C   CP +AIK + E   + +
Sbjct: 65  DICIKC--TECELVCKFDAIKN----LKIDPFLCEGCGACTLICPQNAIKLEDEKTAKTF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G    +I  D CI C  CE  C  DAIK
Sbjct: 56 GGKKASIDEDICIKCTECELVCKFDAIK 83


>gi|150391494|ref|YP_001321543.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149951356|gb|ABR49884.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 157

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  +C  C+   C+++CP     + +  + I+ D+C  CG+CE  CP   I
Sbjct: 62  IPAHCRHCQEAFCLQLCPTKAITQEKKVVVINDDKCTGCGICEQGCPYGVI 112


>gi|257438725|ref|ZP_05614480.1| thiosulfate reductase electron transport protein phsb
           [Faecalibacterium prausnitzii A2-165]
 gi|257198860|gb|EEU97144.1| thiosulfate reductase electron transport protein phsb
           [Faecalibacterium prausnitzii A2-165]
          Length = 214

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C  C+   C   CP       E  +  +  D+CI CG C   CP
Sbjct: 119 DTCRQCEDPACGNACPQKAIVTNEQGIRVVDTDKCIGCGACVEACP 164



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 14/56 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCGVCEPECPVDA 54
           V T+ CI C    CVE CP        +   ++P+     +CI CG C   CP  A
Sbjct: 148 VDTDKCIGCG--ACVEACPW-------HMPTVNPETGKSSKCIACGACVAGCPSGA 194


>gi|254037077|ref|ZP_04871154.1| formate-dependent nitrite reductase [Escherichia sp. 1_1_43]
 gi|226840183|gb|EEH72185.1| formate-dependent nitrite reductase [Escherichia sp. 1_1_43]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|32470879|ref|NP_863872.1| molybdopterin oxidoreductase, iron sulfur subunit [Rhodopirellula
           baltica SH 1]
 gi|32443024|emb|CAD71545.1| molybdopterin oxidoreductase, iron sulfur subunit [Rhodopirellula
           baltica SH 1]
          Length = 623

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIH-PDECIDCGVCEPECPVDAIKP 57
           VT  C  C+   C+  CPV  + +     +  H  D+CI C  C   CP +  K 
Sbjct: 176 VTTACHHCEDPGCLNGCPVKAYDKDPETGIVRHLDDQCIGCKYCTMMCPYEVPKY 230


>gi|319776070|ref|YP_004138558.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3047]
 gi|301170439|emb|CBW30046.1| predicted iron-sulfur protein [Haemophilus influenzae 10810]
 gi|317450661|emb|CBY86881.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3047]
          Length = 193

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP D I
Sbjct: 103 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCI 155



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E    I  + CI C  C   CPVDAI
Sbjct: 100 EKVAFIDENMCIGCTKCIQACPVDAI 125


>gi|258516509|ref|YP_003192731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780214|gb|ACV64108.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 947

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V T +C  C    C+  CP       E+ + I+P +C  CG+C  ECP++A++
Sbjct: 880 VNTGDCAACL--TCLRTCPYSVPKIVEHKVFINPVQCRGCGICTSECPLNALE 930


>gi|223982716|ref|ZP_03632946.1| hypothetical protein HOLDEFILI_00220 [Holdemania filiformis DSM
           12042]
 gi|223965312|gb|EEF69594.1| hypothetical protein HOLDEFILI_00220 [Holdemania filiformis DSM
           12042]
          Length = 201

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M Y +T  C  C    C+ VCP  C         I  + C+ CG C+  CP  A+  +
Sbjct: 145 MRYGITAKCDGCGV--CLSVCPQQCIELTGKQAHIRQEHCLHCGQCQQHCPKQAVVRE 200


>gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 533

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDC-----GVCEPECPVD 53
          M Y + ENCI C    C  +CP D        +   I P  C  C      +C   C   
Sbjct: 1  MNYTIKENCIACDV--CQPLCPQDAIKPNSESDGYWIDPTLCDGCPDLEIPLCVSACDTG 58

Query: 54 AIKPDTE 60
          A+KP   
Sbjct: 59 ALKPLPP 65



 Score = 40.1 bits (93), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
                + CI C VC+P CP DAIKP++E  
Sbjct: 1  MNYTIKENCIACDVCQPLCPQDAIKPNSESD 31


>gi|254230289|ref|ZP_04923678.1| 4Fe-4S binding domain protein [Vibrio sp. Ex25]
 gi|151937186|gb|EDN56055.1| 4Fe-4S binding domain protein [Vibrio sp. Ex25]
          Length = 249

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 116 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 164


>gi|126175973|ref|YP_001052122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999178|gb|ABN63253.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 188

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y GE+ + +IH ++C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGEDGIISIHTEKCVGCMYCVAACPY 104



 Score = 33.6 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 14/74 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----------VCEPECPVDAI 55
           TE C+ C +  CV  CP    +      A   D+C  C            C   CP DA+
Sbjct: 89  TEKCVGCMY--CVAACPYKVRFMNPETKA--ADKCNFCKDSRLARGEEPACVTVCPTDAL 144

Query: 56  KPDTEPGLELWLKI 69
                   +  + I
Sbjct: 145 VFGDANDPQSDVAI 158


>gi|284048714|ref|YP_003399053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidaminococcus fermentans DSM 20731]
 gi|283952935|gb|ADB47738.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidaminococcus fermentans DSM 20731]
          Length = 57

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + + ++ CI C    C   CPV    E      +    CIDC  C   CPV AIK +
Sbjct: 1  MAHKINQDECIGCG--SCAGTCPVGAIAEDNGKYKVDEASCIDCDACTGACPVGAIKAE 57


>gi|281181155|dbj|BAI57485.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE15]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|269102198|ref|ZP_06154895.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162096|gb|EEZ40592.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 192

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 106 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAIHTVIKDECTGCKLCVAPCPTDCIEMITV 163

Query: 58  DTEPGLELW 66
           +  P    W
Sbjct: 164 EETPDTWKW 172


>gi|237712153|ref|ZP_04542634.1| F420H2:quinone oxidoreductase [Bacteroides sp. 9_1_42FAA]
 gi|229453474|gb|EEO59195.1| F420H2:quinone oxidoreductase [Bacteroides sp. 9_1_42FAA]
          Length = 407

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 12 CKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
          C  + CV+ CP  C       EG  +  +  ++CIDCG+CE  CP
Sbjct: 11 CGCSSCVQKCPKKCISMYEDDEGFLYPVVDKEKCIDCGLCEIVCP 55


>gi|156937594|ref|YP_001435390.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ignicoccus hospitalis KIN4/I]
 gi|156566578|gb|ABU81983.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Ignicoccus
           hospitalis KIN4/I]
          Length = 219

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCP    Y  ++ +  +  ++CI CG C   CP  A
Sbjct: 107 CRHCEDAPCAHVCPTRATYVTKDGVVMVDKNKCILCGACIVACPYAA 153


>gi|124027920|ref|YP_001013240.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Hyperthermus butylicus DSM 5456]
 gi|123978614|gb|ABM80895.1| Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Hyperthermus butylicus DSM 5456]
          Length = 264

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C + CPV+         + I  D+C+ C  C   CP D  + D
Sbjct: 75  CMHCSEAPCAKACPVNAIEVHPEGAVVIRSDKCVGCQYCIEACPYDVPRYD 125


>gi|83309275|ref|YP_419539.1| ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
 gi|82944116|dbj|BAE48980.1| Ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
          Length = 393

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C E CPVD          +  D+C  C  C   CP  AI
Sbjct: 14 CIRCN--TCEEACPVDAITHDGTNYVVSYDKCTGCRTCVSPCPTGAI 58



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 14/24 (58%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P  CI C  CE  CPVDAI  D
Sbjct: 9  IDPVVCIRCNTCEEACPVDAITHD 32


>gi|323141275|ref|ZP_08076171.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414232|gb|EFY05055.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 272

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + CP++     E    I+   CI CGVC+  CPV AI  
Sbjct: 221 CIGCGL--CEKKCPMESAELAEGKAQINQHNCICCGVCQHACPVQAISY 267



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 35  IHPDECIDCGVCEPECPVD 53
           +  ++CI CG+CE +CP++
Sbjct: 216 VDKNQCIGCGLCEKKCPME 234


>gi|299531136|ref|ZP_07044548.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni S44]
 gi|298720839|gb|EFI61784.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni S44]
          Length = 433

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I
Sbjct: 20 EICIRCN--TCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSI 66



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D  
Sbjct: 17 IDPEICIRCNTCEATCPVDAITHDDN 42


>gi|167549507|ref|ZP_02343266.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205325402|gb|EDZ13241.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 653

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|89092828|ref|ZP_01165780.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
 gi|89082853|gb|EAR62073.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
          Length = 555

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGL 63
           C LC    CV VCP      G    A++     C+ CG+C+  CP +AI+ +T   L
Sbjct: 424 CTLCL--SCVAVCPTQALTAGGETPALNFVEQSCVQCGLCDSACPENAIQLETRLSL 478



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 3   YVVTENCIL-----CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++  + C          T C++VCP D      + + I P  C   G C   CP  AI  
Sbjct: 178 HINNDICAHSSRGQTGCTRCLDVCPADAISSINDLVNIDPHMCHGAGGCATACPTGAISY 237

Query: 58  DTEPGLE 64
                L 
Sbjct: 238 ALPQPLR 244


>gi|317489724|ref|ZP_07948227.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316911190|gb|EFV32796.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 394

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C +VC   C    +N L I P+ CI CG C   CP  A++       EL
Sbjct: 37 MKCADVCTSGCISYDDNELVIEPERCIGCGTCATVCPTCALEAHRPNDAEL 87



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
            + I P++C  C +C   CP  AI
Sbjct: 287 HVIIDPEKCSSCQMCATFCPTGAI 310



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 3   YVVTEN--CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V+ +   C  C    C   CP          +G   +   P +C+ C  C   CP  A+
Sbjct: 287 HVIIDPEKCSSC--QMCATFCPTGAIAKYADEDGSIGVTHRPVDCVKCRCCTDICPEGAL 344

Query: 56  KPDTE 60
           +   E
Sbjct: 345 ELSDE 349


>gi|223985317|ref|ZP_03635393.1| hypothetical protein HOLDEFILI_02699 [Holdemania filiformis DSM
          12042]
 gi|223962718|gb|EEF67154.1| hypothetical protein HOLDEFILI_02699 [Holdemania filiformis DSM
          12042]
          Length = 563

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+Y+     NC  C    CV VCP        +   I  DECI CG C   CP  A K  
Sbjct: 1  MSYIQLSEANCRNCL--RCVRVCPTKAMTYQNHQPTILEDECILCGKCYAICPHSAKKVH 58

Query: 59 TEPGL-ELWLK--------INSEYATQWPN 79
          ++      W+         I   +A+ WP+
Sbjct: 59 SDGDQVRAWIAQGQPLALSIAPSFASVWPD 88


>gi|205353583|ref|YP_002227384.1| oxidoreductase Fe-S binding subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273364|emb|CAR38335.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628679|gb|EGE35022.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 653

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|126465606|ref|YP_001040715.1| cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1]
 gi|126014429|gb|ABN69807.1| Cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1]
          Length = 329

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V E CI C   +C+  CP +      N   I+   C  C  C   CP  AI+
Sbjct: 72  IVQEKCINCG--ECMNACPFNAVELINNKYVINKWICEGCYTCSFVCPTKAIR 122



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ +YEG  +  I  ++CI+CG C   CP +A++
Sbjct: 61 IEPYYEG-RYAEIVQEKCINCGECMNACPFNAVE 93


>gi|157960089|ref|YP_001500123.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157845089|gb|ABV85588.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 228

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECP 51
           C+ C    CV  CPV+     E+F     I PD+CI C  C   CP
Sbjct: 102 CLQCHDAPCVTACPVNANKASEDFDFVRDIDPDKCIGCMQCIEACP 147


>gi|20093761|ref|NP_613608.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing
           [Methanopyrus kandleri AV19]
 gi|19886668|gb|AAM01538.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin
           containing [Methanopyrus kandleri AV19]
          Length = 150

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C+ C    C+  CPVD        +  + I  +EC+ CG+C   CP +A++   +
Sbjct: 71  VDEDRCVYCGV--CMRTCPVDAIQVTKPYQGHIEIDDEECVGCGLCVEICPCNALEFGRD 128

Query: 61  PGLEL 65
              E 
Sbjct: 129 GTAEK 133



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
              + +  D C+ CGVC   CPVDAI+       +  ++I+ E
Sbjct: 66  PKNVEVDEDRCVYCGVCMRTCPVDAIQ--VTKPYQGHIEIDDE 106


>gi|116753345|ref|YP_842463.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116664796|gb|ABK13823.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 128

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+ +CP   F   +  +   P +CI CG C   CP  A++
Sbjct: 77  EECVHCG--ACIAICPTGTFRFDDWKVVTDPGKCIQCGACVTACPHRALQ 124


>gi|295097294|emb|CBK86384.1| Fe-S-cluster-containing hydrogenase components 2 [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 186

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 63  CRQCEDAPCANVCPNGAIKREKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 115


>gi|237731331|ref|ZP_04561812.1| iron-sulfur cluster-binding protein [Citrobacter sp. 30_2]
 gi|226906870|gb|EEH92788.1| iron-sulfur cluster-binding protein [Citrobacter sp. 30_2]
          Length = 239

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C    C+EVCP    +  EN +  +    CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCDDAPCIEVCPTGASWRDENGIVRVDTSCCIGCSYCIGACPYQVRYLNPQTKVAD 166

Query: 64  ELWLKINSEYATQWPNIT 81
           +      S  A  +P I 
Sbjct: 167 KCDFCAESRLAKGFPPIC 184


>gi|51247051|ref|YP_066934.1| related to F420H2-dehydrogenase, beta subunit [Desulfotalea
           psychrophila LSv54]
 gi|50878088|emb|CAG37944.1| related to F420H2-dehydrogenase, beta subunit [Desulfotalea
           psychrophila LSv54]
          Length = 443

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY---EGENFLA--IHPDECIDCGVCEPECPVDA 54
           M ++ T E+C  C    C+ +CP  C     + E FL   +    C +CG+CE  CPV  
Sbjct: 56  MIHLNTKEDCCGC--HACLSICPAKCIQMLPDTEGFLYPMVDESLCPECGLCESVCPV-- 111

Query: 55  IKPDTEPGLE-LWLKINSE 72
           I P  + G    +   N  
Sbjct: 112 INPPRQEGDSVAFAAWNRN 130


>gi|332140733|ref|YP_004426471.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550755|gb|AEA97473.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 193

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 111 AFIREDECIGC--TKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCI 163



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +  E+      I  DECI C  C   CPVDAI
Sbjct: 93  VEPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAI 133



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C    CV+ CPVDC 
Sbjct: 140 MHTVITDECTGCDL--CVDPCPVDCI 163


>gi|194437237|ref|ZP_03069335.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           101-1]
 gi|194423793|gb|EDX39782.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           101-1]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP     I P T+   
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYHVRFIHPVTKTAD 150

Query: 64  E 64
           +
Sbjct: 151 K 151


>gi|116750554|ref|YP_847241.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116699618|gb|ABK18806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1015

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 9    CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C    CV  CP        ++   I+   C  CG+C  ECP  AI+       ++ +
Sbjct: 948  CAACLV--CVRSCPYGVPQINKDDVSEINEALCQGCGICASECPAKAIRLAHYADDQIMV 1005

Query: 68   KINS 71
            K+++
Sbjct: 1006 KVDA 1009



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 27/93 (29%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDEC--ID 42
           YV    CI C    C E CP    D +  G                +  AI    C  I 
Sbjct: 106 YVDLSKCISCG--ACAEKCPAVVSDAYNAGLGKRKAIYKLYAQATPSGYAIDAANCRRIG 163

Query: 43  ----CGVCEPECPVDAIKPDTEPGLELWLKINS 71
               C VC   CP  A+   T+    L L++ +
Sbjct: 164 RGKKCSVCAKFCPAGAVDY-TQQEQVLDLEVGA 195



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
            +   +CI CG C  +CP   +      GL     I   YA   P+
Sbjct: 106 YVDLSKCISCGACAEKCPA-VVSDAYNAGLGKRKAIYKLYAQATPS 150


>gi|108805515|ref|YP_645452.1| formate dehydrogenase subunit beta [Rubrobacter xylanophilus DSM
           9941]
 gi|108766758|gb|ABG05640.1| formate dehydrogenase beta subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 312

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVD 53
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP  
Sbjct: 134 SDVCKHCTEAPCLDVCPTGAIFRTEFGTVVVQEDVCNGCGYCIPACPFG 182


>gi|325968086|ref|YP_004244278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707289|gb|ADY00776.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
          Length = 444

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           DCV  CP +      N + I+ + CI+CG+C  +CP  A
Sbjct: 117 DCVNACPTNATSIVNNRVVINENACIECGLCVSKCPTGA 155



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAI 55
           C  C    C   CP   F  G +     L  +  +CI CG C   CP  AI
Sbjct: 314 CSFCGV--CFAKCPERAFDVGRDGNKTVLKFNSLKCIGCGHCARLCPEKAI 362


>gi|255084007|ref|XP_002508578.1| NADH dehydrogenase [Micromonas sp. RCC299]
 gi|226523855|gb|ACO69836.1| NADH dehydrogenase [Micromonas sp. RCC299]
          Length = 228

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 127 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 183



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 168 CIYCGF--CQEACPVDAIVEGPNFEY 191



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 127 ERCIACKLCEAICPAQAITIEAEERED 153


>gi|89276311|gb|ABD66512.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Gymnadenia
           conopsea]
          Length = 226

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 125 ERCIACKLCEAICPAQAITIEAEERED 151



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 166 CIYCGF--CQEACPVDAIVEGPNF 187


>gi|78224702|ref|YP_386449.1| twin-arginine translocation pathway signal [Geobacter
           metallireducens GS-15]
 gi|78195957|gb|ABB33724.1| Twin-arginine translocation pathway signal [Geobacter
           metallireducens GS-15]
          Length = 257

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C++  CV+VCPV   Y   + +  +    CI CG C   CP  
Sbjct: 123 AFFVPKLCNQCENPPCVQVCPVGATYATADGVVLVDRKWCIGCGYCIMGCPYG 175


>gi|332296822|ref|YP_004438744.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
 gi|332179925|gb|AEE15613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
          Length = 370

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    C + C            +I+ D+C+ CG C   CP DA+ P  +   
Sbjct: 194 VTQEACVGCG--MCRKNCAHGAITIEAKKASINHDKCVGCGRCIGACPKDAVHPGADHSG 251

Query: 64  ELWLKINSEYAT 75
           ++   +N + A 
Sbjct: 252 DV---LNCKMAE 260


>gi|309389845|gb|ADO77725.1| putative PAS/PAC sensor protein [Halanaerobium praevalens DSM
          2228]
          Length = 592

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD-TEPGLELW 66
          +C  C    C+  CPV      +N   I  ++CI CG C   CP  A      E  LE +
Sbjct: 28 SCKDC--HKCLRECPVAAIGFKDNQAFIIEEKCIYCGNCIKTCPQGAKSALFEEKKLEAF 85

Query: 67 LK 68
          L+
Sbjct: 86 LE 87



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  +    L + P  C DC  C  ECPV AI
Sbjct: 14 CLKKMNETLIVKPASCKDCHKCLRECPVAAI 44


>gi|293374979|ref|ZP_06621274.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|292646389|gb|EFF64404.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
          Length = 568

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL-ELW 66
          NC  C    CV  CPV           I  + CI CG+C   CP +  K +TE    + +
Sbjct: 10 NCKNC--YACVRACPVQSIKIKNEQAIIMEERCIACGLCLKACPKNVKKIETELEKVKQF 67

Query: 67 LK 68
          +K
Sbjct: 68 IK 69


>gi|291283740|ref|YP_003500558.1| putative polyferredoxin [Escherichia coli O55:H7 str. CB9615]
 gi|290763613|gb|ADD57574.1| Putative polyferredoxin [Escherichia coli O55:H7 str. CB9615]
 gi|320657197|gb|EFX25006.1| putative polyferredoxin [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320662803|gb|EFX30135.1| putative polyferredoxin [Escherichia coli O55:H7 str. USDA 5905]
          Length = 284

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CI+C VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIECAVCQFICPQEAIR 64


>gi|264676201|ref|YP_003276107.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni CNB-2]
 gi|262206713|gb|ACY30811.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni CNB-2]
          Length = 433

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I
Sbjct: 20 EICIRCN--TCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSI 66



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D  
Sbjct: 17 IDPEICIRCNTCEATCPVDAITHDDN 42


>gi|213051548|ref|ZP_03344426.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425190|ref|ZP_03357940.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 653

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
 gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
          Length = 306

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C EVCP D     +  + I   +C  CGVC   CP  A
Sbjct: 58  CMRCG--TCQEVCPQDALELTQGGVVIDRTQCTRCGVCAHYCPTTA 101


>gi|170765592|ref|ZP_02900403.1| formate hydrogenlyase, subunit B [Escherichia albertii TW07627]
 gi|170124738|gb|EDS93669.1| formate hydrogenlyase, subunit B [Escherichia albertii TW07627]
          Length = 203

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+        + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNAITRVNGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|11498296|ref|NP_069522.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649926|gb|AAB90550.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 368

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPD 58
           +  V T  CI C    C+  CP+       N    ++  ++C+ CGVC P CP++AI+  
Sbjct: 281 LATVDTSRCIACG--ICMLRCPMKAIKAKINREPASVDAEKCLGCGVCVPTCPMEAIELV 338

Query: 59  TEPGL 63
               L
Sbjct: 339 ERDEL 343


>gi|84623478|ref|YP_450850.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367418|dbj|BAE68576.1| ferredoxin II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 142

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C+  CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 84  AWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 137


>gi|26250880|ref|NP_756920.1| NrfC protein [Escherichia coli CFT073]
 gi|91213615|ref|YP_543601.1| NrfC protein [Escherichia coli UTI89]
 gi|110644424|ref|YP_672154.1| NrfC protein [Escherichia coli 536]
 gi|117626354|ref|YP_859677.1| formate-dependent nitire reductase subunit NrfC [Escherichia coli
           APEC O1]
 gi|191171961|ref|ZP_03033506.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli F11]
 gi|215489417|ref|YP_002331848.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218561157|ref|YP_002394070.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli S88]
 gi|218692364|ref|YP_002400576.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ED1a]
 gi|227886899|ref|ZP_04004704.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           83972]
 gi|237703652|ref|ZP_04534133.1| formate-dependent nitrite reductase subunit NrfC [Escherichia sp.
           3_2_53FAA]
 gi|300973868|ref|ZP_07172357.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           45-1]
 gi|300980240|ref|ZP_07174898.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           200-1]
 gi|301051420|ref|ZP_07198230.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           185-1]
 gi|306815806|ref|ZP_07449951.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli NC101]
 gi|312965680|ref|ZP_07779909.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           2362-75]
 gi|331660652|ref|ZP_08361584.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA206]
 gi|26111312|gb|AAN83494.1|AE016771_5 NrfC protein [Escherichia coli CFT073]
 gi|91075189|gb|ABE10070.1| NrfC protein [Escherichia coli UTI89]
 gi|110346016|gb|ABG72253.1| NrfC protein [Escherichia coli 536]
 gi|115515478|gb|ABJ03553.1| formate-dependent nitire reductase subunit NrfC [Escherichia coli
           APEC O1]
 gi|190907726|gb|EDV67320.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli F11]
 gi|215267489|emb|CAS11943.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218367926|emb|CAR05723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli S88]
 gi|218429928|emb|CAR10905.2| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ED1a]
 gi|222035795|emb|CAP78540.1| Protein nrfC [Escherichia coli LF82]
 gi|226901564|gb|EEH87823.1| formate-dependent nitrite reductase subunit NrfC [Escherichia sp.
           3_2_53FAA]
 gi|227836040|gb|EEJ46506.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           83972]
 gi|294489652|gb|ADE88408.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|300296950|gb|EFJ53335.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           185-1]
 gi|300307807|gb|EFJ62327.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           200-1]
 gi|300410678|gb|EFJ94216.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           45-1]
 gi|305850781|gb|EFM51237.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli NC101]
 gi|307556236|gb|ADN49011.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli ABU 83972]
 gi|307629137|gb|ADN73441.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UM146]
 gi|312289654|gb|EFR17545.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           2362-75]
 gi|312948660|gb|ADR29487.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315287909|gb|EFU47311.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           110-3]
 gi|315294773|gb|EFU54116.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           153-1]
 gi|315297484|gb|EFU56763.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           16-3]
 gi|320193444|gb|EFW68081.1| NrfC protein [Escherichia coli WV_060327]
 gi|323190048|gb|EFZ75326.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           RN587/1]
 gi|323950368|gb|EGB46249.1| cytochrome c nitrite reductase [Escherichia coli H252]
 gi|323954449|gb|EGB50233.1| cytochrome c nitrite reductase [Escherichia coli H263]
 gi|324009516|gb|EGB78735.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           57-2]
 gi|324015614|gb|EGB84833.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           60-1]
 gi|331051694|gb|EGI23733.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA206]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|323170275|gb|EFZ55928.1| protein aegA [Escherichia coli LT-68]
          Length = 604

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 51 CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 95


>gi|300787601|ref|YP_003767892.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
 gi|299797115|gb|ADJ47490.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
          Length = 294

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C++VCP    +  E   + +  D C  CG C P CP   I
Sbjct: 110 SDVCKHCTEAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCIPACPYGVI 160


>gi|258516351|ref|YP_003192573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257780056|gb|ACV63950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 55

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+Y +TE C  C    C + CP D   EG +   I  ++C +CG C  ECP  AI  +
Sbjct: 1  MSYRITEACEACG--TCKDACPNDAIIEG-DIYKIDAEKCAECGACVEECPTGAIVEE 55


>gi|261342154|ref|ZP_05970012.1| electron transport protein HydN [Enterobacter cancerogenus ATCC
           35316]
 gi|288315487|gb|EFC54425.1| electron transport protein HydN [Enterobacter cancerogenus ATCC
           35316]
          Length = 181

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAIKREKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|171058237|ref|YP_001790586.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775682|gb|ACB33821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 438

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           CI      C + CP D     G   + ++   CI  G C+  CP DAI
Sbjct: 56  CIGSG--SCTKACPEDALGMVGGKAVLVNASACIGHGACQAACPFDAI 101



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 34 AIHPDECIDCGVCEPECPVDA 54
           I P  CI  G C   CP DA
Sbjct: 50 VIDPARCIGSGSCTKACPEDA 70


>gi|170765779|ref|ZP_02900590.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170124925|gb|EDS93856.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 247

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y+   +C  CK   C+  CP D     +   +I   +C  CG CE  CP  AI P
Sbjct: 1  MSYIDQTSCTGCKV--CLLFCPDDAIEYYDGKCSIDSKQCTLCGCCEGCCPFSAIHP 55


>gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 634

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++   C  C  T C   CPV       +    I  D+CI CG C+  C   A+
Sbjct: 581 ILASKCKGC--TACARKCPVGAITGKVKEVHVIDADKCIKCGACKAACKFGAV 631


>gi|303258408|ref|ZP_07344411.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|331000576|ref|ZP_08324245.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
 gi|302858854|gb|EFL81942.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|329571247|gb|EGG52943.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
          Length = 247

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +       + + PD C+ C  C   CP +
Sbjct: 117 SCQQCQDAPCVRVCPTGAAHRDPKTGIVTMDPDRCVGCKYCIAACPYN 164


>gi|296104198|ref|YP_003614344.1| putative polyferredoxin [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295058657|gb|ADF63395.1| putative polyferredoxin [Enterobacter cloacae subsp. cloacae ATCC
          13047]
          Length = 291

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 5  VTENCI-----LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT  C+           C + CPV  F   ++ + I    CI+CG C   CP  AI
Sbjct: 12 VTHACVRRRFRHASCHACADACPVQAFSFTDSGVLIDDSRCIECGDCLFVCPAGAI 67



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+LC    C   C           L +  + C  CG CE  C   AIK
Sbjct: 193 CVLCG--ACWRSCQEKAIRFENASLRVETEYCTGCGGCEAVCQHAAIK 238


>gi|289828862|ref|ZP_06546605.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 220

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|189191492|ref|XP_001932085.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973691|gb|EDU41190.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 230

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI 
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAIV 186

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 187 EGP----------NAEYATETREELLYNKEKLLANGDKWE 216


>gi|156743326|ref|YP_001433455.1| NADH-quinone oxidoreductase subunit I [Roseiflexus castenholzii DSM
           13941]
 gi|156234654|gb|ABU59437.1| NADH-quinone oxidoreductase, chain I [Roseiflexus castenholzii DSM
           13941]
          Length = 165

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------------YEGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP D                 GE +     I+   CI CG CE  C
Sbjct: 50  ERCIGC--SLCAAACPADAILVVPAENDPAAPNSPGERYAARYEINMLRCIFCGYCEDAC 107

Query: 51  PVDAIKPDTEPGLELW 66
           P +AI  + +  L  +
Sbjct: 108 PTNAIVLEHQYELSFY 123


>gi|75906669|ref|YP_320965.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75700394|gb|ABA20070.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 529

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M Y +  N C+ C   +C   CP        N   I P  C +C G      C   CPV 
Sbjct: 1  MPYTIPNNSCVGCD--NCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVK 58

Query: 54 AIKP 57
          +  P
Sbjct: 59 SPIP 62



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            I  + C+ C  C P+CP  AIK +     
Sbjct: 3  YTIPNNSCVGCDNCRPQCPTGAIKIENNKYW 33


>gi|117922345|ref|YP_871537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614677|gb|ABK50131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 553

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469



 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + + P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEVDPYLCHGAGSCASACPTGAIGYDLPTPQALHSYLNKIINRY 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267


>gi|16273571|ref|NP_439826.1| electron transport complex protein RnfB [Haemophilus influenzae Rd
           KW20]
 gi|68250288|ref|YP_249400.1| electron transport complex protein RnfB [Haemophilus influenzae
           86-028NP]
 gi|145629224|ref|ZP_01785023.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.1-21]
 gi|145631464|ref|ZP_01787233.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|145633618|ref|ZP_01789345.1| electron transport complex protein RnfB [Haemophilus influenzae
           3655]
 gi|145635460|ref|ZP_01791161.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittAA]
 gi|145639160|ref|ZP_01794767.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittII]
 gi|148825772|ref|YP_001290525.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittEE]
 gi|229845219|ref|ZP_04465352.1| electron transport complex protein RnfB [Haemophilus influenzae
           6P18H1]
 gi|229847305|ref|ZP_04467407.1| electron transport complex protein RnfB [Haemophilus influenzae
           7P49H1]
 gi|260581277|ref|ZP_05849095.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW]
 gi|260582612|ref|ZP_05850401.1| electron transport complex protein RnfB [Haemophilus influenzae
           NT127]
 gi|319896879|ref|YP_004135074.1| electron transport complex protein rnfb [Haemophilus influenzae
           F3031]
 gi|329123233|ref|ZP_08251801.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC
           11116]
 gi|6136672|sp|P71396|RNFB_HAEIN RecName: Full=Electron transport complex protein rnfB
 gi|81335291|sp|Q4QJQ7|RNFB_HAEI8 RecName: Full=Electron transport complex protein rnfB
 gi|166225084|sp|A5UBJ1|RNFB_HAEIE RecName: Full=Electron transport complex protein rnfB
 gi|1574536|gb|AAC23330.1| iron-sulfur cluster binding protein [Haemophilus influenzae Rd
           KW20]
 gi|68058487|gb|AAX88740.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Haemophilus
           influenzae 86-028NP]
 gi|144978727|gb|EDJ88450.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.1-21]
 gi|144982894|gb|EDJ90407.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|144985495|gb|EDJ92311.1| electron transport complex protein RnfB [Haemophilus influenzae
           3655]
 gi|145267334|gb|EDK07337.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittAA]
 gi|145271722|gb|EDK11632.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittII]
 gi|148715932|gb|ABQ98142.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittEE]
 gi|229809730|gb|EEP45454.1| electron transport complex protein RnfB [Haemophilus influenzae
           7P49H1]
 gi|229811814|gb|EEP47510.1| electron transport complex protein RnfB [Haemophilus influenzae
           6P18H1]
 gi|260092104|gb|EEW76049.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW]
 gi|260094284|gb|EEW78183.1| electron transport complex protein RnfB [Haemophilus influenzae
           NT127]
 gi|309750740|gb|ADO80724.1| Electron transport complex protein RnfB [Haemophilus influenzae
           R2866]
 gi|309972920|gb|ADO96121.1| Electron transport complex protein RnfB [Haemophilus influenzae
           R2846]
 gi|317432383|emb|CBY80738.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3031]
 gi|327471442|gb|EGF16890.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC
           11116]
          Length = 193

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP D I
Sbjct: 103 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCI 155



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E    I  + CI C  C   CPVDAI
Sbjct: 100 EKVAFIDENMCIGCTKCIQACPVDAI 125


>gi|332346076|gb|AEE59410.1| cytochrome c nitrite reductase, Fe-S protein NrfC [Escherichia coli
           UMNK88]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|331650093|ref|ZP_08351166.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M605]
 gi|330908407|gb|EGH36926.1| NrfC protein [Escherichia coli AA86]
 gi|331041038|gb|EGI13195.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M605]
          Length = 223

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|304314490|ref|YP_003849637.1| F420-dependent sulfite reductase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587949|gb|ADL58324.1| F420-dependent sulfite reductase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 690

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V E C  C    C EVC V+           + D C+ CG C  ECP  A
Sbjct: 560 TVEEICNGCG--RCFEVCKVEAISVRGETSYTNHDLCVGCGKCIRECPHTA 608


>gi|296109957|ref|YP_003616906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434771|gb|ADG13942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 252

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    CVE CP+DC Y+    + I  D+C+ C +CE  CP  AIK
Sbjct: 193 ELCVGC--MVCVEECPIDCIYDIGGVVEIDNDKCVLCRICEEVCPTKAIK 240



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 10 ILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
          I CK   C + CPVD     +        D CI C +C   CPVDAI 
Sbjct: 42 ICCKCNLCYKECPVDAIERAKVKRAVKIKDNCIKCEICAKTCPVDAIF 89



 Score = 41.3 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E C  C    C  VCP        +   +++ D CI CG CE +CP  A+K + E G
Sbjct: 126 EKCGKCG--ICAMVCPTKAIKVVRKKSFSVNLDLCIGCGACEEQCPKKAVKVERELG 180



 Score = 40.9 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C    C E CP               E  + +  + C+ C VC  ECP+D I
Sbjct: 153 VNLDLCIGCG--ACEEQCPKKAVKVERELGNIYKEGHMEVDKELCVGCMVCVEECPIDCI 210

Query: 56  KP 57
             
Sbjct: 211 YD 212



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 28/78 (35%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGE------------------------NFLAIHPD 38
           + +NCI C+   C + CPVD  +  EG+                             + +
Sbjct: 69  IKDNCIKCE--ICAKTCPVDAIFVIEGDVNIKDSKIVLSINKKEVMKRKIRLKNYIFNDE 126

Query: 39  ECIDCGVCEPECPVDAIK 56
           +C  CG+C   CP  AIK
Sbjct: 127 KCGKCGICAMVCPTKAIK 144


>gi|149374620|ref|ZP_01892394.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893]
 gi|149361323|gb|EDM49773.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893]
          Length = 182

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVDCISLQKGEQEDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMGEY 127


>gi|305667525|ref|YP_003863812.1| pyridine nucleotide-disulphide oxidoreductase domain-containing
          protein [Maribacter sp. HTCC2170]
 gi|88709575|gb|EAR01808.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
          [Maribacter sp. HTCC2170]
          Length = 410

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           Y+    CI      C+  CP       EN +   I+   CI  G C   CPV+AI
Sbjct: 23 PYIDLNECIGSG--ACITACPEKDILGIENGIATVINTSNCIGHGACFHSCPVEAI 76


>gi|115352917|ref|YP_774756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia ambifaria AMMD]
 gi|115282905|gb|ABI88422.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia ambifaria AMMD]
          Length = 88

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MSLMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|93005410|ref|YP_579847.1| NADH dehydrogenase subunit I [Psychrobacter cryohalolentis K5]
 gi|110287769|sp|Q1QD90|NUOI_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|92393088|gb|ABE74363.1| NADH-quinone oxidoreductase, chain I [Psychrobacter cryohalolentis
           K5]
          Length = 182

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  +  +++ +  Y  +   I+   +   
Sbjct: 118 MTPDFEMGEYVRQDLVYEKEHLLISGPGKYPD 149


>gi|324112958|gb|EGC06934.1| glutamate synthase [Escherichia fergusonii B253]
          Length = 636

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 33 CHHCEDAPCARSCPNGAISHVNDSVQVNQQKCIGCKSCVIACPFG 77


>gi|307130992|ref|YP_003883008.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
 gi|306528521|gb|ADM98451.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
          Length = 196

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            +V  +NCI C  T C++ CPVD        +  +  D C  C +C P CP D I+
Sbjct: 109 AWVDEDNCIGC--TKCIQACPVDAIVGTTRAVHTVIRDLCTGCNLCVPPCPTDCIE 162


>gi|300704663|ref|YP_003746266.1| 4fe-4S ferredoxin, iron-sulfur binding [Ralstonia solanacearum
           CFBP2957]
 gi|299072327|emb|CBJ43661.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CFBP2957]
          Length = 268

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E+CI C  T C++ CPVD           +  D C  C +C   CPVD I          
Sbjct: 88  EHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDMVPVTGERA 145

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 146 GWDAWSQAQADAAR 159



 Score = 41.7 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I P+ CI C +C   CPVDAI
Sbjct: 84  VIDPEHCIGCTLCIQACPVDAI 105


>gi|288932668|ref|YP_003436728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894916|gb|ADC66453.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 160

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ +CPV   Y  E  N + + PD CI C  C   CP  AI  D +
Sbjct: 53  CEHCEEAPCMIICPVKAIYRDEETNAVLLDPDICIGCKQCMVVCPFGAIGFDED 106


>gi|258542714|ref|YP_003188147.1| NADH dehydrogenase subunit I [Acetobacter pasteurianus IFO 3283-01]
 gi|256633792|dbj|BAH99767.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636851|dbj|BAI02820.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639904|dbj|BAI05866.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642960|dbj|BAI08915.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646015|dbj|BAI11963.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649068|dbj|BAI15009.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652055|dbj|BAI17989.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655112|dbj|BAI21039.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-12]
          Length = 162

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP +    E E             I   +CI CG+CE  CPVDAI
Sbjct: 61  ERCIACKL--CEATCPAEAITIEAEERDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117



 Score = 37.4 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP +AI  + E   +
Sbjct: 61 ERCIACKLCEATCPAEAITIEAEERDD 87



 Score = 33.6 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG N+
Sbjct: 102 CIYCGL--CEEACPVDAIVEGPNY 123


>gi|167762908|ref|ZP_02435035.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC
           43183]
 gi|167699248|gb|EDS15827.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP   I     P  + 
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQGTIIALNFPPRKP 275

Query: 66  WLKINSEYATQWPNITTKKESLPSAAK 92
                +E     P +    + +  AAK
Sbjct: 276 ----KAEGEAVAPKVAEPVKKVAEAAK 298



 Score = 40.1 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C               +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVSACQFGAIRMNPETGLPEVDESKCTACGACVKACPRNIIE 189


>gi|158319260|ref|YP_001511767.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158139459|gb|ABW17771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 186

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           V + C  C  T CV  CPV    + E+ +  +  ++CI C  C   CP  A   + E
Sbjct: 55  VPQLCNHCDETPCVSACPVKATDKSEDGIVFVDREKCIGCFACVGACPYGARIQEEE 111


>gi|332969438|gb|EGK08461.1| ferredoxin [Psychrobacter sp. 1501(2011)]
          Length = 82

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C  VCP D  YEGE+   I+PD C +C        C   CP+D 
Sbjct: 1  MALMITDECINCDV--CEPVCPNDAIYEGEDIYEINPDLCTECVGHFDEPQCVEICPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPHD 62


>gi|325496246|gb|EGC94105.1| electron transporter hydN [Escherichia fergusonii ECD227]
          Length = 175

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|295102368|emb|CBK99913.1| Fe-S-cluster-containing hydrogenase components 1 [Faecalibacterium
           prausnitzii L2-6]
          Length = 214

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           + C  C+   C   CP       E  +  +  D+CI CG C   CP
Sbjct: 119 DTCRQCEDPACGNACPQKAITTNEQGIRVVDTDKCIGCGACHEACP 164



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 14/56 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCGVCEPECPVDA 54
           V T+ CI C    C E CP        +   ++P+     +CI CG C   CP  A
Sbjct: 148 VDTDKCIGCG--ACHEACPW-------HMPTVNPETGKSSKCIACGACVAGCPSGA 194


>gi|213619202|ref|ZP_03373028.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 143

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|206890760|ref|YP_002249173.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742698|gb|ACI21755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 666

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C  C    CV +CP        Y+G+    I P  C  CGVC   CP  AIK +    
Sbjct: 596 DKCSSCGV--CVPLCPYSAIRIEEYKGKEKAYIEPALCAGCGVCASACPSRAIKFNGFTT 653

Query: 63  LELWLKINS 71
            ++  +I++
Sbjct: 654 EQIMAQIDA 662



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK-PDTEPGLELWLK 68
            +  D+C  CGVC P CP  AI+  + +   + +++
Sbjct: 592 EVDRDKCSSCGVCVPLCPYSAIRIEEYKGKEKAYIE 627



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 34  AIHPDECIDCGVCEPECP 51
            I  D+CI CGVC   CP
Sbjct: 238 YIDWDKCIGCGVCTEICP 255


>gi|149201260|ref|ZP_01878235.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149145593|gb|EDM33619.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 260

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 87  SCLHCDDAPCVTVCPTGASYKRVEDGIVLVNETDCIGCGLCAWACPYGAREMDQAEG 143


>gi|149194896|ref|ZP_01871990.1| ferredoxin [Caminibacter mediatlanticus TB-2]
 gi|149135055|gb|EDM23537.1| ferredoxin [Caminibacter mediatlanticus TB-2]
          Length = 84

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  + E CI C    CV+ CP      G+    I PD C +C        C   CPVDA
Sbjct: 1  MSLKINEECIACD--ACVDECPNGAIEPGDPIYEIDPDLCTECIEYGGEPQCVQVCPVDA 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|89902847|ref|YP_525318.1| hydrogenase 2 protein HybA [Rhodoferax ferrireducens T118]
 gi|89347584|gb|ABD71787.1| Twin-arginine translocation pathway signal [Rhodoferax
           ferrireducens T118]
          Length = 331

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C+ C    CV  CPV           +A  P  C+ C  C   CP  
Sbjct: 114 SCMHCADPSCVSACPVSAMTKDPATGIVAYDPGACVGCRYCVVACPFG 161


>gi|74313277|ref|YP_311696.1| electron transport protein HydN [Shigella sonnei Ss046]
 gi|73856754|gb|AAZ89461.1| involved in electron transport from formate to hydrogen, Fe-S
           centers [Shigella sonnei Ss046]
          Length = 175

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|15678133|ref|NP_275248.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621136|gb|AAB84604.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 622

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    C  VCP D     E+   I   +CI CG C   CPV
Sbjct: 170 CVFCG--TCEIVCPTDAIKIVEDHAEIDKTKCIMCGSCLAACPV 211



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    C   C  D        + I  + C+ C +C   CP+ AI    E
Sbjct: 48 CQQCVDPSCARGCFRDAIRRENGAVKIDQESCVGCKLCMLMCPIGAITYTDE 99



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI----DCGVCEPEC 50
           E+C+ CK   C+ +CP+      +  +     +CI    D   C   C
Sbjct: 77  ESCVGCKL--CMLMCPIGAITYTDEGMVKCDQQCIEKPGDTPACVAAC 122



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 40  CIDCGVCEPECPVDAIK 56
           C+ CG CE  CP DAIK
Sbjct: 170 CVFCGTCEIVCPTDAIK 186


>gi|194432997|ref|ZP_03065280.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|194418724|gb|EDX34810.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|332088583|gb|EGI93696.1| protein aegA domain protein [Shigella dysenteriae 155-74]
          Length = 175

 Score = 54.0 bits (129), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|331681003|ref|ZP_08381640.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H299]
 gi|331081224|gb|EGI52385.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H299]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|293415783|ref|ZP_06658426.1| polyferredoxin [Escherichia coli B185]
 gi|291433431|gb|EFF06410.1| polyferredoxin [Escherichia coli B185]
          Length = 284

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CI+C VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIECAVCQFICPQEAIR 64


>gi|282856353|ref|ZP_06265632.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
 gi|282585724|gb|EFB91013.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
          Length = 649

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C+   CP   F   E    I P +C+ C VC   CP  AI
Sbjct: 597 CIGCK--KCLSTGCPALSFDTRERKAVIDPMQCVGCTVCAQVCPRQAI 642


>gi|242281209|ref|YP_002993338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124103|gb|ACS81799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 139

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEP 61
            V + C+ C    C EVCP        +    IH  D CI CG C   CPVDAI  D + 
Sbjct: 49  FVAKVCMACSPAPCAEVCPTGAMRGRKKGGGVIHKKDLCIRCGKCAEACPVDAIYLDLKD 108



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C E CPVD  Y     L   P  CI CG C   CP + ++
Sbjct: 85  DLCIRCG--KCAEACPVDAIYLD---LKDRPYVCIHCGRCVEFCPHECLE 129


>gi|225713986|gb|ACO12839.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 203

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 102 ERCIACKL--CEAICPAQAITIEAEERSDGARRTTRYDIDMTKCIYCGLCQEACPVDAI 158



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 102 ERCIACKLCEAICPAQAITIEAEE 125



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 143 CIYCGL--CQEACPVDAIVEGPNF 164


>gi|194445567|ref|YP_002041785.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194404230|gb|ACF64452.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
          Length = 287

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIVAVRCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D  
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDN 213


>gi|297537625|ref|YP_003673394.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylotenera sp. 301]
 gi|297256972|gb|ADI28817.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylotenera sp. 301]
          Length = 435

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           C    CV+ CP            +  P  CI  G C   CPV+AIK
Sbjct: 59  CGSGACVKACPEKALSLINGKAVLTDPTHCIGHGACLEACPVEAIK 104


>gi|325680883|ref|ZP_08160420.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324107347|gb|EGC01626.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 405

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          V ++C  C  + C+  CP DC       EG ++      +CIDCG C   CPV
Sbjct: 7  VKKDCCGC--SACMNSCPKDCIKMKPDKEGFSYPVTDAAKCIDCGRCTKVCPV 57


>gi|262376770|ref|ZP_06069998.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii
           SH145]
 gi|262308480|gb|EEY89615.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii
           SH145]
          Length = 180

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  +++ +  Y  +   I+   +   
Sbjct: 116 MTPDFELGEYVRQDLVYEKEHLLISGPGKYPD 147


>gi|260868162|ref|YP_003234564.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
 gi|257764518|dbj|BAI36013.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
          Length = 239

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|170769899|ref|ZP_02904352.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia albertii
           TW07627]
 gi|170121193|gb|EDS90124.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia albertii
           TW07627]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|154498291|ref|ZP_02036669.1| hypothetical protein BACCAP_02280 [Bacteroides capillosus ATCC
          29799]
 gi|150272838|gb|EDN00007.1| hypothetical protein BACCAP_02280 [Bacteroides capillosus ATCC
          29799]
          Length = 503

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E C  C    C + CP+D  +  E    +  ++C +CGVC   C   AI    E
Sbjct: 1  MVIVNLEACKGC--MICEKNCPLDAVHVVERKAVVDAEKCCECGVCTRVCKFGAISKPAE 58


>gi|152989151|ref|YP_001347023.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PA7]
 gi|166991043|sp|A6V1T8|RNFB_PSEA7 RecName: Full=Electron transport complex protein rnfB
 gi|150964309|gb|ABR86334.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 188

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+  + 
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMREI 163

Query: 60  EPGLELW 66
            P +  W
Sbjct: 164 APDVRHW 170



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           P+D   E       I   ECI C  C   CPVDAI
Sbjct: 94  PLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|29654985|ref|NP_820677.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coxiella burnetii RSA 493]
 gi|154707199|ref|YP_001423730.1| electron transport complex protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161830706|ref|YP_001597520.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 331]
 gi|29542254|gb|AAO91191.1| electron transport complex protein [Coxiella burnetii RSA 493]
 gi|154356485|gb|ABS77947.1| electron transport complex protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161762573|gb|ABX78215.1| electron transport complex, RnfABCDGE type, B subunit [Coxiella
           burnetii RSA 331]
          Length = 213

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   C+  CPVDC 
Sbjct: 110 MHTVITDACTGCEL--CLPPCPVDCI 133


>gi|16762960|ref|NP_458577.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144447|ref|NP_807789.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213021319|ref|ZP_03335766.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163055|ref|ZP_03348765.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427238|ref|ZP_03359988.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213622746|ref|ZP_03375529.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647382|ref|ZP_03377435.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859692|ref|ZP_03385396.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25285334|pir||AF1020 cytochrome c-type biogenesis protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505267|emb|CAD09263.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140085|gb|AAO71649.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|301156415|emb|CBW15886.1| formate hydrogenlyase subunit 2 (fhl subunit 2) (hydrogenase-3
          component b) [Haemophilus parainfluenzae T3T1]
          Length = 199

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C  + C  VCPV       + + ++   CI C +C   CP  AI
Sbjct: 51 CRHCDDSPCATVCPVHAITHINDTIQLNESLCIGCKLCGIACPFGAI 97


>gi|145591121|ref|YP_001153123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282889|gb|ABP50471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 373

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E C LC    CV VCP D      + L + P  CI CGVC  +CP   I+   +P   
Sbjct: 255 VKEGCTLCG--ACVNVCPTDALSIKGHELRLVPALCIACGVCAEKCPEGVIEIRQQPEKR 312

Query: 65  LW 66
            +
Sbjct: 313 PY 314



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C    C   CP   F   E  +  +  D C+DCG+C   CPVDAIK  + P 
Sbjct: 85  DKCIWCGL--CAGYCPASAFEYVERAVVRVKYDLCVDCGLCNSVCPVDAIKMPSLPD 139


>gi|53725521|ref|YP_103524.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76812165|ref|YP_332747.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|52428944|gb|AAU49537.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76581618|gb|ABA51093.1| electron transport complex, RnfABCDGE type, B subunit subfamily,
           putative [Burkholderia pseudomallei 1710b]
          Length = 316

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 106 AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 158


>gi|187733852|ref|YP_001882767.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii CDC
           3083-94]
 gi|187430844|gb|ACD10118.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii CDC
           3083-94]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|193063017|ref|ZP_03044109.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli E22]
 gi|194426867|ref|ZP_03059420.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           B171]
 gi|260846866|ref|YP_003224644.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|192931276|gb|EDV83878.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli E22]
 gi|194415203|gb|EDX31472.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           B171]
 gi|257762013|dbj|BAI33510.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|323162159|gb|EFZ48024.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E128010]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|15804664|ref|NP_290705.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 EDL933]
 gi|15834308|ref|NP_313081.1| NrfC [Escherichia coli O157:H7 str. Sakai]
 gi|16131898|ref|NP_418496.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|24115338|ref|NP_709848.1| formate-dependent nitrite reductase [Shigella flexneri 2a str. 301]
 gi|30064661|ref|NP_838832.1| formate-dependent nitrite reductase [Shigella flexneri 2a str.
           2457T]
 gi|74314565|ref|YP_312984.1| formate-dependent nitrite reductase [Shigella sonnei Ss046]
 gi|82546416|ref|YP_410363.1| formate-dependent nitrite reductase complex Fe-S centers [Shigella
           boydii Sb227]
 gi|89110793|ref|AP_004573.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|110807909|ref|YP_691429.1| formate-dependent nitrite reductase [Shigella flexneri 5 str. 8401]
 gi|157157837|ref|YP_001465576.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E24377A]
 gi|157163542|ref|YP_001460860.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli HS]
 gi|168748075|ref|ZP_02773097.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755247|ref|ZP_02780254.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760926|ref|ZP_02785933.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766336|ref|ZP_02791343.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774435|ref|ZP_02799442.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780489|ref|ZP_02805496.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784693|ref|ZP_02809700.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC869]
 gi|168798260|ref|ZP_02823267.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC508]
 gi|170021929|ref|YP_001726883.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli ATCC
           8739]
 gi|170083526|ref|YP_001732846.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188495798|ref|ZP_03003068.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           53638]
 gi|191168764|ref|ZP_03030541.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli B7A]
 gi|194432233|ref|ZP_03064521.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           1012]
 gi|195935857|ref|ZP_03081239.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808344|ref|ZP_03250681.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811978|ref|ZP_03253307.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819115|ref|ZP_03259435.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396255|ref|YP_002273613.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209921558|ref|YP_002295642.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE11]
 gi|217325897|ref|ZP_03441981.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556630|ref|YP_002389544.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI1]
 gi|218697781|ref|YP_002405448.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli 55989]
 gi|218707694|ref|YP_002415213.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UMN026]
 gi|238903181|ref|YP_002928977.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BW2952]
 gi|253775300|ref|YP_003038131.1| cytochrome C nitrite reductase, Fe-S protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164007|ref|YP_003047115.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli B str. REL606]
 gi|254796092|ref|YP_003080929.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|256019721|ref|ZP_05433586.1| formate-dependent nitrite reductase, 4Fe4S subunit [Shigella sp.
           D9]
 gi|256024946|ref|ZP_05438811.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia sp.
           4_1_40B]
 gi|260858182|ref|YP_003232073.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260870831|ref|YP_003237233.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O111:H- str. 11128]
 gi|261225191|ref|ZP_05939472.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255557|ref|ZP_05948090.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285489|ref|YP_003502307.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402711|ref|ZP_06646808.1| cytochrome c nitrite reductase [Escherichia coli FVEC1412]
 gi|293407806|ref|ZP_06651646.1| cytochrome c nitrite reductase [Escherichia coli B354]
 gi|293417577|ref|ZP_06660199.1| cytochrome c nitrite reductase [Escherichia coli B185]
 gi|293476377|ref|ZP_06664785.1| cytochrome c nitrite reductase [Escherichia coli B088]
 gi|298378240|ref|ZP_06988124.1| formate-dependent nitrite reductase [Escherichia coli FVEC1302]
 gi|300817994|ref|ZP_07098207.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           107-1]
 gi|300824670|ref|ZP_07104777.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           119-7]
 gi|300897486|ref|ZP_07115904.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           198-1]
 gi|300906393|ref|ZP_07124091.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           84-1]
 gi|300916948|ref|ZP_07133648.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           115-1]
 gi|300930495|ref|ZP_07145894.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           187-1]
 gi|300946659|ref|ZP_07160916.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           116-1]
 gi|300957506|ref|ZP_07169716.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           175-1]
 gi|301019230|ref|ZP_07183426.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           196-1]
 gi|301021611|ref|ZP_07185607.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           69-1]
 gi|301302762|ref|ZP_07208891.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           124-1]
 gi|301645068|ref|ZP_07245030.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           146-1]
 gi|307140763|ref|ZP_07500119.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           H736]
 gi|307312086|ref|ZP_07591723.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli W]
 gi|309795881|ref|ZP_07690295.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           145-7]
 gi|312974130|ref|ZP_07788301.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1827-70]
 gi|331644815|ref|ZP_08345932.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H736]
 gi|331655895|ref|ZP_08356883.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M718]
 gi|331665744|ref|ZP_08366638.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA143]
 gi|331670938|ref|ZP_08371772.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA271]
 gi|331680203|ref|ZP_08380862.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H591]
 gi|332280856|ref|ZP_08393269.1| nrfC [Shigella sp. D9]
 gi|77416666|sp|P0AAK8|NRFC_ECO57 RecName: Full=Protein nrfC; Flags: Precursor
 gi|77416667|sp|P0AAK7|NRFC_ECOLI RecName: Full=Protein nrfC; Flags: Precursor
 gi|77416668|sp|P0AAK9|NRFC_SHIFL RecName: Full=Protein nrfC; Flags: Precursor
 gi|12519029|gb|AAG59270.1|AE005640_4 formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. EDL933]
 gi|404304|emb|CAA51043.1| nrfC [Escherichia coli]
 gi|2367345|gb|AAC77042.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|13364531|dbj|BAB38477.1| formate-dependent nitrite reductase NrfC [Escherichia coli O157:H7
           str. Sakai]
 gi|24054641|gb|AAN45555.1| formate-dependent nitrite reductase [Shigella flexneri 2a str. 301]
 gi|30042920|gb|AAP18643.1| formate-dependent nitrite reductase [Shigella flexneri 2a str.
           2457T]
 gi|73858042|gb|AAZ90749.1| formate-dependent nitrite reductase [Shigella sonnei Ss046]
 gi|81247827|gb|ABB68535.1| formate-dependent nitrite reductase complex Fe-S centers [Shigella
           boydii Sb227]
 gi|85676824|dbj|BAE78074.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|110617457|gb|ABF06124.1| NrfC protein [Shigella flexneri 5 str. 8401]
 gi|157069222|gb|ABV08477.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli HS]
 gi|157079867|gb|ABV19575.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E24377A]
 gi|169756857|gb|ACA79556.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli ATCC
           8739]
 gi|169891361|gb|ACB05068.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|187769817|gb|EDU33661.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017384|gb|EDU55506.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|188490997|gb|EDU66100.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           53638]
 gi|189001818|gb|EDU70804.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357547|gb|EDU75966.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364249|gb|EDU82668.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368569|gb|EDU86985.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374793|gb|EDU93209.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189379215|gb|EDU97631.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC508]
 gi|190901191|gb|EDV60963.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli B7A]
 gi|194419436|gb|EDX35517.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           1012]
 gi|208728145|gb|EDZ77746.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733255|gb|EDZ81942.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739238|gb|EDZ86920.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157655|gb|ACI35088.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209751068|gb|ACI73841.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751070|gb|ACI73842.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751072|gb|ACI73843.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751074|gb|ACI73844.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209751076|gb|ACI73845.1| formate-dependent nitrite reductase NrfC [Escherichia coli]
 gi|209914817|dbj|BAG79891.1| formate-dependent nitrite reductase nrfC subunit [Escherichia coli
           SE11]
 gi|217322118|gb|EEC30542.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354513|emb|CAV01381.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli 55989]
 gi|218363399|emb|CAR01052.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI1]
 gi|218434791|emb|CAR15723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli UMN026]
 gi|238861138|gb|ACR63136.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BW2952]
 gi|242379599|emb|CAQ34421.1| formate-dependent nitrite reductase, 4Fe-4S subunit, subunit of
           nitrite reductase complex [Escherichia coli BL21(DE3)]
 gi|253326344|gb|ACT30946.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975908|gb|ACT41579.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli B str. REL606]
 gi|253980064|gb|ACT45734.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli BL21(DE3)]
 gi|254595492|gb|ACT74853.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|257756831|dbj|BAI28333.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257767187|dbj|BAI38682.1| formate-dependent nitrite reductase NrfC, 4Fe4S subunit
           [Escherichia coli O111:H- str. 11128]
 gi|260451098|gb|ACX41520.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli DH1]
 gi|281603444|gb|ADA76428.1| putative Fe-S-cluster-containing hydrogenase components 1 [Shigella
           flexneri 2002017]
 gi|290765362|gb|ADD59323.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320830|gb|EFE60272.1| cytochrome c nitrite reductase [Escherichia coli B088]
 gi|291429626|gb|EFF02640.1| cytochrome c nitrite reductase [Escherichia coli FVEC1412]
 gi|291430295|gb|EFF03293.1| cytochrome c nitrite reductase [Escherichia coli B185]
 gi|291472057|gb|EFF14539.1| cytochrome c nitrite reductase [Escherichia coli B354]
 gi|298280574|gb|EFI22075.1| formate-dependent nitrite reductase [Escherichia coli FVEC1302]
 gi|299882331|gb|EFI90542.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           196-1]
 gi|300315756|gb|EFJ65540.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           175-1]
 gi|300358761|gb|EFJ74631.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           198-1]
 gi|300397952|gb|EFJ81490.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           69-1]
 gi|300401841|gb|EFJ85379.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           84-1]
 gi|300415776|gb|EFJ99086.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           115-1]
 gi|300453638|gb|EFK17258.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           116-1]
 gi|300461629|gb|EFK25122.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           187-1]
 gi|300522853|gb|EFK43922.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           119-7]
 gi|300529404|gb|EFK50466.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           107-1]
 gi|300841982|gb|EFK69742.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           124-1]
 gi|301076634|gb|EFK91440.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           146-1]
 gi|306907893|gb|EFN38394.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli W]
 gi|308120542|gb|EFO57804.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           145-7]
 gi|309704540|emb|CBJ03889.1| cytochrome c-type biogenesis protein [Escherichia coli ETEC H10407]
 gi|310331664|gb|EFP98920.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1827-70]
 gi|313648724|gb|EFS13164.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri 2a
           str. 2457T]
 gi|315063396|gb|ADT77723.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli W]
 gi|315138627|dbj|BAJ45786.1| formate-dependent nitrite reductase 4Fe-4S subunit [Escherichia
           coli DH1]
 gi|315254754|gb|EFU34722.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           85-1]
 gi|315617447|gb|EFU98053.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           3431]
 gi|320174437|gb|EFW49581.1| NrfC protein [Shigella dysenteriae CDC 74-1112]
 gi|320183144|gb|EFW58004.1| NrfC protein [Shigella flexneri CDC 796-83]
 gi|320190799|gb|EFW65449.1| NrfC protein [Escherichia coli O157:H7 str. EC1212]
 gi|320200794|gb|EFW75380.1| NrfC protein [Escherichia coli EC4100B]
 gi|320638829|gb|EFX08475.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. G5101]
 gi|320644197|gb|EFX13262.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H- str. 493-89]
 gi|320649516|gb|EFX18040.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H- str. H 2687]
 gi|320654912|gb|EFX22873.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660418|gb|EFX27879.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665689|gb|EFX32726.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155881|gb|EFZ42049.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           EPECa14]
 gi|323164520|gb|EFZ50321.1| cytochrome c nitrite reductase, Fe-S protein [Shigella sonnei 53G]
 gi|323171496|gb|EFZ57142.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           LT-68]
 gi|323175963|gb|EFZ61555.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1180]
 gi|323182179|gb|EFZ67589.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           1357]
 gi|323380540|gb|ADX52808.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           KO11]
 gi|323935563|gb|EGB31894.1| cytochrome c nitrite reductase [Escherichia coli E1520]
 gi|323940256|gb|EGB36449.1| cytochrome c nitrite reductase [Escherichia coli E482]
 gi|323946206|gb|EGB42240.1| cytochrome c nitrite reductase [Escherichia coli H120]
 gi|323960438|gb|EGB56072.1| cytochrome c nitrite reductase [Escherichia coli H489]
 gi|323965736|gb|EGB61188.1| cytochrome c nitrite reductase [Escherichia coli M863]
 gi|323969791|gb|EGB65072.1| cytochrome c nitrite reductase [Escherichia coli TA007]
 gi|323975292|gb|EGB70395.1| cytochrome c nitrite reductase [Escherichia coli TW10509]
 gi|324017129|gb|EGB86348.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           117-3]
 gi|324118645|gb|EGC12537.1| cytochrome c nitrite reductase [Escherichia coli E1167]
 gi|326341879|gb|EGD65662.1| NrfC protein [Escherichia coli O157:H7 str. 1125]
 gi|326346547|gb|EGD70281.1| NrfC protein [Escherichia coli O157:H7 str. 1044]
 gi|327250419|gb|EGE62132.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           STEC_7v]
 gi|331035790|gb|EGI08028.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H736]
 gi|331046249|gb|EGI18339.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           M718]
 gi|331056795|gb|EGI28789.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA143]
 gi|331061852|gb|EGI33777.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           TA271]
 gi|331071666|gb|EGI43002.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           H591]
 gi|332083567|gb|EGI88787.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii
           5216-82]
 gi|332084228|gb|EGI89431.1| cytochrome c nitrite reductase, Fe-S protein [Shigella dysenteriae
           155-74]
 gi|332087818|gb|EGI92944.1| cytochrome c nitrite reductase, Fe-S protein [Shigella boydii
           3594-74]
 gi|332103208|gb|EGJ06554.1| nrfC [Shigella sp. D9]
 gi|332752191|gb|EGJ82583.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-671]
 gi|332753277|gb|EGJ83658.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           2747-71]
 gi|332764783|gb|EGJ95012.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           2930-71]
 gi|333011118|gb|EGK30532.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-272]
 gi|333012690|gb|EGK32070.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-227]
 gi|333014265|gb|EGK33621.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-304]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|310659230|ref|YP_003936951.1| indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii
           DSM 519]
 gi|308826008|emb|CBH22046.1| Indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii]
          Length = 600

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCF--YEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           YV    CI CK   C++  CP      YEG   L  +I  ++C+ C +C   CPV+AIK
Sbjct: 532 YVDPNICIGCK--TCIKTNCPPLRMKKYEGIEKLKSSIDKNQCVGCSICAQVCPVNAIK 588


>gi|331653947|ref|ZP_08354948.1| putative polyferredoxin [Escherichia coli M718]
 gi|331048796|gb|EGI20872.1| putative polyferredoxin [Escherichia coli M718]
          Length = 284

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CVE CP       E  +A+  ++CI+C VC+  CP +AI+
Sbjct: 23 HACVEACPAQALTLTEEGIAVDAEQCIECAVCQFICPQEAIR 64


>gi|303248865|ref|ZP_07335114.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489734|gb|EFL49667.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ]
          Length = 582

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    C+  CPV           + P+ CI CG C   CP  A
Sbjct: 8  YTIETECQDC--YRCLRHCPVKAIQVENGRATVVPELCIACGQCVAACPAHA 57


>gi|300924342|ref|ZP_07140319.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           182-1]
 gi|301330549|ref|ZP_07223159.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           78-1]
 gi|300419432|gb|EFK02743.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           182-1]
 gi|300843501|gb|EFK71261.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           78-1]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|269140245|ref|YP_003296946.1| electron transport protein [Edwardsiella tarda EIB202]
 gi|267985906|gb|ACY85735.1| electron transport protein [Edwardsiella tarda EIB202]
 gi|304560075|gb|ADM42739.1| Electron transport protein HydN [Edwardsiella tarda FL6-60]
          Length = 180

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C  VCP       ++F+ +  ++CI C  C   CP  
Sbjct: 58  CRQCEDAPCANVCPNGAISRQQDFICVDQEKCIGCKTCVVACPYG 102


>gi|261343672|ref|ZP_05971317.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
 gi|282568055|gb|EFB73590.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
          Length = 204

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163



 Score = 39.0 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 18  VEVCPVDCFYEGENFL----AIHPDECIDCGVCEPECPVDAI 55
           V+  P+D     +N +     I  + CI C  C   CPVDAI
Sbjct: 91  VDPQPIDGDENAQNPVRKVAVIDEENCIGCTKCIQACPVDAI 132


>gi|197283983|ref|YP_002149855.1| hypothetical protein PMI0070 [Proteus mirabilis HI4320]
 gi|227358148|ref|ZP_03842489.1| oxidoreductase, Fe-S subunit [Proteus mirabilis ATCC 29906]
 gi|194681470|emb|CAR40309.1| putative oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
 gi|227161484|gb|EEI46521.1| oxidoreductase, Fe-S subunit [Proteus mirabilis ATCC 29906]
          Length = 209

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T+ C  CK  +C+ VCPV      E F  + +    CI C  C   CP
Sbjct: 121 TDTCRQCKTPECMNVCPVKAIRYQEEFGCIVVDTRRCIGCAACTTACP 168


>gi|91213088|ref|YP_543074.1| putative electron transport protein YsaA [Escherichia coli UTI89]
 gi|117625856|ref|YP_859179.1| putative electron transport protein YsaA [Escherichia coli APEC O1]
 gi|237703345|ref|ZP_04533826.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91074662|gb|ABE09543.1| putative electron transport protein YsaA [Escherichia coli UTI89]
 gi|115514980|gb|ABJ03055.1| putative electron transport protein YsaA [Escherichia coli APEC O1]
 gi|226902609|gb|EEH88868.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 159

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 53  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 107


>gi|396407|gb|AAC43166.1| ORF_o223 [Escherichia coli str. K-12 substr. MG1655]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|62181094|ref|YP_217511.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62128727|gb|AAX66430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|322715581|gb|EFZ07152.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 287

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDD 213


>gi|15668380|ref|NP_247176.1| 4Fe-4S iron-sulfur protein [Methanocaldococcus jannaschii DSM 2661]
 gi|2494448|sp|Q57661|Y208_METJA RecName: Full=Uncharacterized protein MJ0208
 gi|1498983|gb|AAB98191.1| 4Fe-4S iron-sulfur protein [Methanocaldococcus jannaschii DSM 2661]
          Length = 246

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQW 77
           + VCP     + +NF+ I   +C+ CG C+  CP +AI    E  + +  KI++E   + 
Sbjct: 166 INVCPNGAIVKRDNFVEILLSKCLGCGNCKKVCPYNAIIEGKEIKMRVR-KIDAENTRKL 224

Query: 78  P 78
            
Sbjct: 225 M 225


>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
 gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
          Length = 595

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y +  E CI C  T C   CPV     E +    I    CI CGVC   C   A++
Sbjct: 539 SYTINAEKCIGC--TACARKCPVAAISGERKQVHVIDQSICIKCGVCMETCKFGAVE 593



 Score = 40.9 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
             I+ ++CI C  C  +CPV AI  +
Sbjct: 540 YTINAEKCIGCTACARKCPVAAISGE 565


>gi|310828225|ref|YP_003960582.1| RnfB [Eubacterium limosum KIST612]
 gi|308739959|gb|ADO37619.1| RnfB [Eubacterium limosum KIST612]
          Length = 347

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI CK   CV+VCP +      N  +I+ D+C  C  C  +CP  AI  +
Sbjct: 217 CIACK--ACVKVCPAEAITVENNLASINYDKCTQCQACFEKCPTGAITLE 264



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CV  C       G+N L  +  D+C  CG C   CP   I
Sbjct: 148 CVSACMFGALSIGDNGLPEVDVDKCTACGKCRDACPKGII 187


>gi|284924166|emb|CBG37266.1| cytochrome c-type biogenesis protein [Escherichia coli 042]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|296110016|ref|YP_003616965.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
 gi|295434830|gb|ADG14001.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
          Length = 613

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V +NC  C    C EVC ++C Y   ++   + + CI CG C   CP +A +   E G  
Sbjct: 491 VNDNCNGCG--RCYEVCKLECIYIRGSYSYTNYNICIGCGKCIKACPNEA-REVLEEGYI 547

Query: 65  LWL 67
           +++
Sbjct: 548 MYI 550


>gi|255942799|ref|XP_002562168.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586901|emb|CAP94552.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 220

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 119 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 176

Query: 57  PDTEPGLELWLKINSEYATQ 76
             +          N+EYAT+
Sbjct: 177 ETS----------NAEYATE 186


>gi|204929112|ref|ZP_03220255.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321656|gb|EDZ06855.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613670|gb|EFY10610.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620241|gb|EFY17110.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623287|gb|EFY20128.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630492|gb|EFY27261.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632831|gb|EFY29576.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638836|gb|EFY35530.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640343|gb|EFY37002.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647151|gb|EFY43650.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648978|gb|EFY45421.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653884|gb|EFY50208.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660991|gb|EFY57220.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663068|gb|EFY59275.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668513|gb|EFY64668.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673352|gb|EFY69455.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679138|gb|EFY75192.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683233|gb|EFY79248.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685897|gb|EFY81887.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195184|gb|EFZ80365.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198752|gb|EFZ83852.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202396|gb|EFZ87439.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209219|gb|EFZ94155.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209798|gb|EFZ94721.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216124|gb|EGA00854.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220676|gb|EGA05123.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223729|gb|EGA08036.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231335|gb|EGA15449.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232573|gb|EGA16670.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240984|gb|EGA25024.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245597|gb|EGA29592.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247627|gb|EGA31576.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251070|gb|EGA34944.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257468|gb|EGA41159.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263361|gb|EGA46895.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266320|gb|EGA49809.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271464|gb|EGA54886.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 192

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP  
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPFQ 109


>gi|148656359|ref|YP_001276564.1| NADH-quinone oxidoreductase subunit I [Roseiflexus sp. RS-1]
 gi|148568469|gb|ABQ90614.1| NADH-quinone oxidoreductase, chain I [Roseiflexus sp. RS-1]
          Length = 165

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------------YEGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP D                 GE +     I+   CI CG CE  C
Sbjct: 50  ERCIGC--SLCAAACPADAILVVPAENDPAAPHSPGERYAERYEINMLRCIFCGYCEDAC 107

Query: 51  PVDAIKPDTEPGLELW 66
           P +AI  + +  L  +
Sbjct: 108 PTNAIVLEHQYELSFY 123


>gi|15678433|ref|NP_275548.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621468|gb|AAB84911.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 261

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VT+ C  C    C   CP       +    +    CI CG C   CP DA++ + E G
Sbjct: 138 VTDRCTACG--TCTRFCPTGAIQLDKEIAVVDESICIGCGACVNVCPSDAVELERELG 193



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C    CV VCP D                L +  D C++C VCE  CP  AI+ + 
Sbjct: 171 CIGCG--ACVNVCPSDAVELERELGPVIETRRLLVDQDACVECLVCEENCPTGAIRIED 227



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C    C E CP       +  + +  D+CI C VC   CPV A+K +     
Sbjct: 203 VDQDACVECLV--CEENCPTGAIRIEDGEVVVDKDKCILCEVCSTRCPVAALKLERLADE 260



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           +T  C+ C    C E CPVD   E   +  A   D C+ C +C   CPV  I
Sbjct: 54  ITPKCVRCNL--CFEECPVDAISESSASKPARILDNCVKCEICAQTCPVRCI 103



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 27/81 (33%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-------------------------DE 39
           + +NC+ C+   C + CPV C    E+   I                           D 
Sbjct: 84  ILDNCVKCE--ICAQTCPVRCINVVESTATIGDEDVTYNLEYVRIPHRLLRMKNIEVTDR 141

Query: 40  CIDCGVCEPECPVDAIKPDTE 60
           C  CG C   CP  AI+ D E
Sbjct: 142 CTACGTCTRFCPTGAIQLDKE 162


>gi|20092251|ref|NP_618326.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
 gi|19917487|gb|AAM06806.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
          Length = 288

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ENC+ CK   C + C V      ++ + I  ++CI CG C   C  DA++ +
Sbjct: 169 ENCVGCKL--CEKACKVGAITVLDDKIRIDLEKCILCGACIAACRKDALRAE 218



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 18  VEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  CP  C    EN           I  + C+ C +CE  C V AI    +
Sbjct: 141 VTGCPAACVRPQENDFGVMGTVKPEILEENCVGCKLCEKACKVGAITVLDD 191


>gi|134297002|ref|YP_001120737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia vietnamiensis G4]
 gi|134140159|gb|ABO55902.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia vietnamiensis G4]
          Length = 88

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPGKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHEESH 69


>gi|298675829|ref|YP_003727579.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298288817|gb|ADI74783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 541

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECID--CGVCEPECPVDAIKPD 58
           +T+ CI C    C E CP D     + +  L    +   C+   C  C   CPV+AIK +
Sbjct: 477 ITDGCIFC--HKCEEECPEDAITILDTDEGLIANYNAQRCLGTSCRRCVGICPVNAIKYE 534

Query: 59  T 59
            
Sbjct: 535 D 535



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 38  DECIDCGVCEPECPVDAIK-PDTEPGL 63
           D CI C  CE ECP DAI   DT+ GL
Sbjct: 479 DGCIFCHKCEEECPEDAITILDTDEGL 505


>gi|284165039|ref|YP_003403318.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284014694|gb|ADB60645.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 552

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C  C    C +VCP    +   ++ L +   D CI C  C+  CP        +     
Sbjct: 215 PCQHCTDAPCEKVCPTTARHTRDKDGLVLTDYDVCIGCRYCQVACPYGVNYFQWDEPDVA 274

Query: 66  WLKINSEYATQWPNIT 81
             +I+ E       IT
Sbjct: 275 HEEISGENGEDPKEIT 290


>gi|257792191|ref|YP_003182797.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476088|gb|ACV56408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 203

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++V   C+ C++  CVE CP +   +   +  + +  ++CI C  C   CP  A      
Sbjct: 51  HIVPMLCMHCENPPCVEACPTEGATYKREDGIVVVDKEKCIGCKSCIMACPYGARYYREN 110

Query: 61  PGLELWLKIN 70
                  ++N
Sbjct: 111 EDGYFGTELN 120


>gi|88859826|ref|ZP_01134465.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
 gi|88817820|gb|EAR27636.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
          Length = 184

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--KPD 58
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I   P 
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGATRQMHTVLIDECTGCDLCVEPCPVDCIDMLPV 164

Query: 59  TEPGLELWLKINS 71
            E       ++N+
Sbjct: 165 QETSQNWKWQLNA 177


>gi|193067862|ref|ZP_03048828.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E110019]
 gi|192958837|gb|EDV89274.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           E110019]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
 gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
          Length = 597

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + C  C  T C   CP D      +    I+P++C+ CG C  +C   AI  +
Sbjct: 546 ADKCKGC--TLCARTCPSDAIIGSVKEPHMINPEKCVKCGACMEKCRFGAIYKE 597



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I  D+C  C +C   CP DAI
Sbjct: 541 QYKIDADKCKGCTLCARTCPSDAI 564


>gi|262280139|ref|ZP_06057924.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260490|gb|EEY79223.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus
           RUH2202]
          Length = 180

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 MTPDFELGEYV 126


>gi|257063467|ref|YP_003143139.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791120|gb|ACV21790.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 192

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           M Y  +  C  C++  CV  CP     + E+       + CI CG C   CP      D 
Sbjct: 49  MPYHFSAGCNHCENPACVANCPTGACQKAEDGTVFRDEEVCIGCGSCANSCPYGHPMIDD 108

Query: 60  EP 61
           E 
Sbjct: 109 EA 110


>gi|257065425|ref|YP_003145097.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256793078|gb|ACV23748.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 637

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +T+ CI CK       CP            +    C  CG+C   CP DAI  +
Sbjct: 585 ITDACIGCKRCITQIGCP--AIGFDGEKAVVDRSLCNGCGLCMQVCPFDAIVKE 636


>gi|123455670|ref|XP_001315577.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121898258|gb|EAY03354.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 499

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV+VCP     +G +        +    C+ CG C   CP  AI
Sbjct: 133 ACIDC--YKCVDVCPTGALTKGNHLQTFGHFGLRDSGCVSCGACVDVCPTKAI 183



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDA 54
               ++++   CIDC  C   CP  A
Sbjct: 123 TTGSISLNHAACIDCYKCVDVCPTGA 148


>gi|119944508|ref|YP_942188.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas
           ingrahamii 37]
 gi|119863112|gb|ABM02589.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas
           ingrahamii 37]
          Length = 184

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CP D I
Sbjct: 106 AFIREDECIGC--TKCIQACPVDAILGATRQMHTVITDECTGCELCVEPCPTDCI 158



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   CVE CP DC 
Sbjct: 135 MHTVITDECTGCEL--CVEPCPTDCI 158


>gi|325969843|ref|YP_004246035.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
 gi|323709046|gb|ADY02533.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
          Length = 656

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +V  ++C       CV  CP        Y G     ++   C  CG C   CP  A++
Sbjct: 579 AFVDQDSCRGSGL--CVSECPYGAIVIKEYAGSKKAWVNEVLCKGCGACVAVCPSGAVQ 635


>gi|330935903|ref|XP_003305174.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
 gi|311317931|gb|EFQ86730.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
          Length = 230

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI 
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAIV 186

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 187 EGP----------NAEYATETREELLYNKEKLLANGDKWE 216


>gi|303244434|ref|ZP_07330769.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus
           okinawensis IH1]
 gi|302485132|gb|EFL48061.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus
           okinawensis IH1]
          Length = 626

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           V  ENC  C    C +VC V+  +        + + CI CG C   CP +
Sbjct: 491 VNEENCNGCG--RCADVCKVEAIHMKGKTSYTNYNACIGCGKCIAACPNE 538



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 8/47 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  CP  C           G  +  ++ + C  CG C   C V+AI 
Sbjct: 466 ISGCPNKCVRPQIHDIGIVGVKYPIVNEENCNGCGRCADVCKVEAIH 512


>gi|300723256|ref|YP_003712556.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629773|emb|CBJ90381.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
          Length = 207

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIIGANRAMHTVVEDLCTGCDLCVAPCPTDCI 162


>gi|87311263|ref|ZP_01093385.1| molybdopterin oxidoreductase, iron sulfur subunit [Blastopirellula
           marina DSM 3645]
 gi|87286003|gb|EAQ77915.1| molybdopterin oxidoreductase, iron sulfur subunit [Blastopirellula
           marina DSM 3645]
          Length = 536

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKP 57
           VT  C  C    C++ CPV  + +     + +H  D+CI C  C   CP D  + 
Sbjct: 115 VTTACHHCADPGCLKGCPVKAYDKDPVTGIVVHLDDQCIGCKYCTMMCPYDVPQY 169


>gi|53728862|ref|ZP_00348260.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|165975622|ref|YP_001651215.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250915|ref|ZP_07337106.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251990|ref|ZP_07338161.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244978|ref|ZP_07527075.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247152|ref|ZP_07529204.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249376|ref|ZP_07531369.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251696|ref|ZP_07533601.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253931|ref|ZP_07535783.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258385|ref|ZP_07540126.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260624|ref|ZP_07542316.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875723|gb|ABY68771.1| putative ferredoxin II, iron sulfur protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649420|gb|EFL79605.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650221|gb|EFL80386.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854143|gb|EFM86351.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856401|gb|EFM88552.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858598|gb|EFM90661.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860893|gb|EFM92901.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863135|gb|EFM95077.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867569|gb|EFM99416.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869701|gb|EFN01486.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 203

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  + PD C  C +C   CP + I+
Sbjct: 114 DMCIGC--TKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIE 162



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           IH D CI C  C   CPVDAI
Sbjct: 111 IHEDMCIGCTKCIQACPVDAI 131


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++YV+  E C  C  T C + CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 538 LSYVIDREKCRGC--TLCAKNCPAGAIIGTVKNPHIIDNEKCIKCGACMEKCHFGAIY 593



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I  ++C  C +C   CP  AI
Sbjct: 529 CPAG-VCKALLSYVIDREKCRGCTLCAKNCPAGAI 562


>gi|257093872|ref|YP_003167513.1| hydrogenase 2 protein HybA [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046396|gb|ACV35584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 344

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C+ C    CV  CPV    +      +A   + C+ C  C   CP  
Sbjct: 126 SCMHCADPSCVSACPVTAMTKDPKTGIVAYDAEACVGCRYCVVACPFG 173


>gi|188577211|ref|YP_001914140.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521663|gb|ACD59608.1| ferredoxin II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 142

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C+  CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 84  AWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 137


>gi|157148004|ref|YP_001455323.1| hypothetical protein CKO_03811 [Citrobacter koseri ATCC BAA-895]
 gi|157085209|gb|ABV14887.1| hypothetical protein CKO_03811 [Citrobacter koseri ATCC BAA-895]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|114332300|ref|YP_748522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nitrosomonas eutropha C91]
 gi|114309314|gb|ABI60557.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Nitrosomonas eutropha C91]
          Length = 89

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I+PD C +C        C   CPV  
Sbjct: 1  MALIITDECINCDV--CEPECPNQAISQGEEIYEINPDLCTECVGHYDTPQCVEVCPVSC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIVD 62



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             I  DECI+C VCEPECP  AI    E
Sbjct: 1  MALIITDECINCDVCEPECPNQAISQGEE 29


>gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 629

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M  +    C  C    CV+ CP      E +    I    CI CG C   C   A++
Sbjct: 573 MPTINAARCKGC--RLCVKACPAGAITGEKKQPHVIDETLCIKCGACATACKFGAVE 627



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
              I+   C  C +C   CP  AI  + +   
Sbjct: 573 MPTINAARCKGCRLCVKACPAGAITGEKKQPH 604


>gi|239618433|ref|YP_002941755.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239507264|gb|ACR80751.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 361

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CVEVCP       E  + +  + C  CG+C+ +CP  AI
Sbjct: 313 CVKCGV--CVEVCPYFALSM-EEQVIVDEEACFGCGLCQTKCPTKAI 356



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I   +C+ CGVC   CP  A+  + +
Sbjct: 308 IDHSKCVKCGVCVEVCPYFALSMEEQ 333


>gi|170760254|ref|YP_001787599.1| iron-sulfur binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407243|gb|ACA55654.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 281

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C    C  +C  D          I P  C  CG C   CP +AIK + E   E +
Sbjct: 65  DVCIKCG--KCKSICKFDAI----ENFKIDPFLCEGCGACTLTCPPNAIKLEDEKNAETF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G     I  D CI CG C+  C  DAI+
Sbjct: 56 GGKKANIDEDVCIKCGKCKSICKFDAIE 83


>gi|162452981|ref|YP_001615348.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
 gi|161163563|emb|CAN94868.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 300

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C +  CV+VCPV   ++  + +  +  + CI C  CE  CP  A + +   
Sbjct: 149 YYLPVQCQQCDNAPCVKVCPVQATWKEPDGIVAVDYNWCIGCRYCEAACPYHARRFNWTK 208

Query: 62  GLELWLKIN 70
                 +IN
Sbjct: 209 PEVPADEIN 217


>gi|171320168|ref|ZP_02909230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria MEX-5]
 gi|172061765|ref|YP_001809417.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia ambifaria MC40-6]
 gi|171094582|gb|EDT39634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria MEX-5]
 gi|171994282|gb|ACB65201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia ambifaria MC40-6]
          Length = 88

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP      G +   I P++C +C        C+  CPV+ 
Sbjct: 1  MSLMITDECINCDV--CEPECPNGAISMGPDIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|91227192|ref|ZP_01261651.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01]
 gi|91188720|gb|EAS75008.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio alginolyticus 12G01]
          Length = 228

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 143


>gi|74312004|ref|YP_310423.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|73855481|gb|AAZ88188.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
          Length = 239

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|295094257|emb|CBK83348.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Coprococcus sp. ART55/1]
          Length = 597

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E CI CK   C+    CP       +  +AI    C  CG+C   CPV AI
Sbjct: 543 ISEKCIQCK--KCIREIGCP--AIILKDGKVAIDESLCTGCGLCSQICPVGAI 591


>gi|256422828|ref|YP_003123481.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
 gi|256037736|gb|ACU61280.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
          Length = 171

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC                F  I+   CI CG CE  CP  AI
Sbjct: 48  GERCVGCYL--CAAACPVDCIALQATEDENGRRYPEFFRINFSRCIFCGYCEEACPTYAI 105

Query: 56  KPDTEPGLELW 66
           +   +  +  +
Sbjct: 106 QLTPDFEMAEY 116


>gi|188585138|ref|YP_001916683.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349825|gb|ACB84095.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 268

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C +VCPVD      N   I   EC++CG C+ +CP D I  D E
Sbjct: 214 CIGCGV--CAKVCPVDAITIENNLAYIDSHECVNCGKCKEKCPRDCITSDLE 263



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           C  +CP D     +N +  I P++C  C  C   CP D IK
Sbjct: 145 CEHICPFDAIEMQDNGIPHIDPEKCTGCNKCANTCPKDVIK 185


>gi|56478497|ref|YP_160086.1| phenylacetyl-CoA:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
 gi|56314540|emb|CAI09185.1| Phenylacetyl-CoA:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
          Length = 215

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C+ C    C EVCP     +  + L  I  D CI C  C   CP +A
Sbjct: 57  SCMHCDEPPCEEVCPTTATKKRADGLVTIDYDTCIGCANCVMACPYEA 104


>gi|146296862|ref|YP_001180633.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410438|gb|ABP67442.1| Fe-S cluster domain protein [Caldicellulosiruptor saccharolyticus
          DSM 8903]
          Length = 444

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 13 EKCRGC--TNCIKKCPTEAIRVRSSKARIIDQRCIDCGECIRTCPYHA 58


>gi|325843356|ref|ZP_08167939.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
 gi|325489385|gb|EGC91758.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
          Length = 568

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL-ELW 66
          NC  C    CV  CPV           I  + CI CG+C   CP +  K +TE    + +
Sbjct: 10 NCKNC--YACVRACPVQSIKIKNEQAIIMEERCIACGLCLKACPKNVKKIETELEKVKQF 67

Query: 67 LK 68
          +K
Sbjct: 68 IK 69


>gi|238921139|ref|YP_002934654.1| 4Fe-4S iron-sulfur binding domain protein [Edwardsiella ictaluri
           93-146]
 gi|238870708|gb|ACR70419.1| 4Fe-4S iron-sulfur binding domain protein [Edwardsiella ictaluri
           93-146]
          Length = 180

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C  VCP       ++F+ +  ++CI C  C   CP  
Sbjct: 58  CRQCEDAPCANVCPNGAISRQQDFICVDQEKCIGCKTCVVACPYG 102


>gi|288574319|ref|ZP_06392676.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570060|gb|EFC91617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 62

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C+ C+   CV  CPV+     +    +   +C++CG C   CPV+AI
Sbjct: 14 ETCVGCE--SCVGTCPVEAIEMNDGKAVVDEGKCVECGACVSACPVEAI 60


>gi|227111751|ref|ZP_03825407.1| nitrite reductase complex component [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 223

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C H  CV+VCP    + +  + +  ++PD C+ C  C   CP     I P T+   
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCLAACPYQVRFIHPQTKTAD 150

Query: 64  E 64
           +
Sbjct: 151 K 151


>gi|222053362|ref|YP_002535724.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
 gi|221562651|gb|ACM18623.1| Electron transfer flavoprotein alpha subunit [Geobacter sp.
          FRC-32]
          Length = 449

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK---- 56
            VV   CI C    C   CPV+     +    A+  ++CI C  C   CP  A++    
Sbjct: 15 ARVVEGKCIACGAR-CESSCPVNSIEMSDGGEPAVLAEKCIGCEKCIKVCPASALEMFYS 73

Query: 57 PDTEPGLELW 66
          P+    L+ W
Sbjct: 74 PEDLELLKQW 83


>gi|91228909|ref|ZP_01262809.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269968667|ref|ZP_06182663.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
 gi|91187540|gb|EAS73872.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269826721|gb|EEZ81059.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
          Length = 198

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|239927159|ref|ZP_04684112.1| Fe-S-cluster-containing hydrogenase, HybA [Streptomyces ghanaensis
           ATCC 14672]
          Length = 235

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPDTEPG 62
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP   I  +PD    
Sbjct: 145 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYGVIDQRPDDGRA 204

Query: 63  LE 64
            +
Sbjct: 205 WK 206


>gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 608

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +V E+C  C    C + CPVD    G+     I    C+ CG+C   C  D I   ++PG
Sbjct: 537 IVAEDCKGCGL--CRKQCPVDAISGGKKEPHVIDQATCLRCGLCVNSCKFDCITVSSKPG 594



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 19  EVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VCP  +C    E    I  ++C  CG+C  +CPVDAI
Sbjct: 522 KVCPAKNCKALIE--YEIVAEDCKGCGLCRKQCPVDAI 557


>gi|224418131|ref|ZP_03656137.1| ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|253827458|ref|ZP_04870343.1| ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313141666|ref|ZP_07803859.1| 4Fe-4S ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|253510864|gb|EES89523.1| ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313130697|gb|EFR48314.1| 4Fe-4S ferredoxin [Helicobacter canadensis MIT 98-5491]
          Length = 83

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    C E CP +   EG+ +  I P+ C +C        C   CPVDA
Sbjct: 1  MSLMINEECIACD--ACREECPNEAIDEGDPYYIIDPELCTECYGFYDEPACLSVCPVDA 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IVSDPD 64


>gi|239617509|ref|YP_002940831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
          olearia TBF 19.5.1]
 gi|239506340|gb|ACR79827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
          olearia TBF 19.5.1]
          Length = 95

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M +V   +CI C    CV+ CPV+      +    I    C  CG C   CP +AI P++
Sbjct: 1  MPWVKENDCIGCGL--CVQACPVENAIKMKDRKAVIDNSVCTRCGKCFDVCPKNAIHPNS 58

Query: 60 E 60
          E
Sbjct: 59 E 59


>gi|168700929|ref|ZP_02733206.1| formate dehydrogenase beta subunit [Gemmata obscuriglobus UQM 2246]
          Length = 319

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C    C + CP       E   + I PD C  C  C   CP   I
Sbjct: 141 SDVCKHCAAAPCQQACPTGSIVYTEFANVYIQPDICNGCAYCVAACPFGVI 191


>gi|270307556|ref|YP_003329614.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. VS]
 gi|270153448|gb|ACZ61286.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Dehalococcoides sp. VS]
          Length = 312

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  C +VCPV   F + +  + I    CI C  C   CP  A
Sbjct: 146 PCMHCDNPPCTKVCPVGATFKQPDGIVVIDYQRCIGCRFCIVACPYTA 193


>gi|15920962|ref|NP_376631.1| indolepyruvate oxidoreductase subunit A [Sulfolobus tokodaii str.
           7]
 gi|15621746|dbj|BAB65740.1| 598aa long hypothetical indolepyruvate oxidoreductase subunit A
           [Sulfolobus tokodaii str. 7]
          Length = 598

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 9   CILCKHTDCVE--VCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI--KPDTEPGL 63
           C  C  T C +   CP       E+    I P  CI CG C P CP +AI  K +   G 
Sbjct: 537 CTGC--TICYDYFTCP--AIIPREDKKAIIDPVLCIGCGACIPICPYNAISLKGEIPKGW 592

Query: 64  EL 65
           + 
Sbjct: 593 DE 594


>gi|326796151|ref|YP_004313971.1| electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
 gi|326546915|gb|ADZ92135.1| Electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
          Length = 198

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 113 DECIGC--TKCIQACPVDAILGAAKQMHTVIADECTGCDLCVEPCPVDCI 160



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D   E    +    I  DECI C  C   CPVDAI
Sbjct: 90  VEALPLDGDVEESPAKRVAVIREDECIGCTKCIQACPVDAI 130



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    CVE CPVDC 
Sbjct: 137 MHTVIADECTGCDL--CVEPCPVDCI 160


>gi|317008927|gb|ADU79507.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          India7]
          Length = 84

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECPVD 53
          M+ +V + CI C    C E CP +   EG+    I PD C +C         C   CPVD
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYHIDPDRCTECYGYDDDEPRCVSVCPVD 58

Query: 54 AIKPD 58
          AI PD
Sbjct: 59 AILPD 63



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|269961739|ref|ZP_06176099.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833522|gb|EEZ87621.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 255

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCPV   ++ E+ +  +    C+ C  C   CP DA
Sbjct: 109 CNHCDNPPCVAVCPVQATFQREDGIVMVDNSRCVACAYCVQACPYDA 155


>gi|116748324|ref|YP_845011.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697388|gb|ABK16576.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 381

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 5   VTENCILCKHTDCVEVC----------PVDCFYEGEN---FLAIHPDECIDCGVCEPECP 51
           + +NCI C    C + C          P D             I P  C+ C  C   CP
Sbjct: 191 ILKNCIGCGV--CRDQCAHEAIELVDRPEDAPRPEPKITQMARIDPRRCVGCAACIHACP 248

Query: 52  VDAIKPDTEPGLELWLKINSEY 73
             A++ D +  L  +++   EY
Sbjct: 249 QHALEVDWKTDLPRFMERMVEY 270


>gi|313203348|ref|YP_004042005.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
 gi|312442664|gb|ADQ79020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
          Length = 443

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V+ +N CI  K   CV+ CP        N     I+   CI  G C   CPV+AI
Sbjct: 56  VIDQNRCI--KSGACVDACPEHDILGIVNGKATVINASHCIGHGACFRACPVEAI 108


>gi|260892256|ref|YP_003238353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
 gi|260864397|gb|ACX51503.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
          Length = 995

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    CV VCP            +AI P  C  CG C  ECP  AI+ +
Sbjct: 927 CVACL--TCVRVCPYGAPRYTPEKGVVAIEPLACQGCGTCVGECPNAAIELE 976



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 20/77 (25%)

Query: 7   ENCILCKHTDCVEVCPVDC---FYEG---------------ENFLAIHPDECIDCGVCEP 48
           E C  C    C +VCPV+    F +G                    I    C  CG C  
Sbjct: 105 EECRACGV--CFKVCPVEVPDEFNQGLSSRKAIYQPYPQAFPRAAVIDWGSCTRCGRCRD 162

Query: 49  ECPVDAIKPDTEPGLEL 65
            CP  AI  + EP  + 
Sbjct: 163 TCPTKAIDLEMEPEEKE 179



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + P +C+ C  C   CP  A +   E G
Sbjct: 922 VDPAKCVACLTCVRVCPYGAPRYTPEKG 949


>gi|161524127|ref|YP_001579139.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|189351116|ref|YP_001946744.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|160341556|gb|ABX14642.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189335138|dbj|BAG44208.1| electron transport complex protein [Burkholderia multivorans ATCC
           17616]
          Length = 320

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 112 AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAMVPV 169

Query: 58  -DTEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 170 TGERTGWDAWTQEQADAARE 189


>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Clostridium thermocellum ATCC 27405]
 gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 597

 Score = 53.6 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M Y +  E C  C    C   CPV     GE      I  ++CI CGVC  +CP  AI
Sbjct: 539 MHYEIDAEKCKSCG--ICARQCPVKAIS-GEKKVPYVIDQNKCIKCGVCMEKCPFKAI 593



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
              I  ++C  CG+C  +CPV AI  + +  
Sbjct: 540 HYEIDAEKCKSCGICARQCPVKAISGEKKVP 570


>gi|328474564|gb|EGF45369.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           10329]
          Length = 198

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +T      W ++N+
Sbjct: 165 ETTTDSWKW-QLNA 177


>gi|256810301|ref|YP_003127670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793501|gb|ACV24170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 405

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+ E+ CI C    C +VC V+     +      I P+ C+ CG CE ECPV AI+   
Sbjct: 272 YVIDEDLCIGC--RICQKVCHVNAVKISKEIKLPYIVPELCVACGACERECPVGAIRAVK 329

Query: 60  EPGLEL 65
               + 
Sbjct: 330 PEEAKE 335



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLEL 65
           E C+ C   +C   CPV+     E    I    CI C  C   CP++ AI    E  L+ 
Sbjct: 126 EVCVRCG--NCERACPVNVIKRKEGRYVIDRASCISCKECIKACPIENAIVVFDERTLKE 183

Query: 66  WLK 68
            ++
Sbjct: 184 KIE 186



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 17/64 (26%)

Query: 8   NCILCKHTDCVEVCPVDCFY------EGENF---------LAIHPDECIDCGVCEPECPV 52
           +CI C   +CVE CP           E E           L I  + C+ CG CE  CPV
Sbjct: 83  SCIAC--ANCVEACPTGVLEIDKHRAETEGLFFDIPKYTNLIIDEEVCVRCGNCERACPV 140

Query: 53  DAIK 56
           + IK
Sbjct: 141 NVIK 144



 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIKPD 58
           E CI C+   C E CP        N         I    CI C  C   CP   ++ D
Sbjct: 47  ERCISCE--ACKESCPAFAIELIYNESYNKKLPKIDEGSCIACANCVEACPTGVLEID 102



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            ++V   CI C    C +VC +      E  +     EC+ CG+C   CP  AI+    
Sbjct: 211 PHIVDSLCITCG--TCKDVC-IGEIDLKEKKVV----ECVKCGLCIEVCPTTAIRTHVP 262


>gi|207859432|ref|YP_002246083.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206711235|emb|CAR35611.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|168243690|ref|ZP_02668622.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194450668|ref|YP_002048269.1| cytochrome c nitrite reductase Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200387438|ref|ZP_03214050.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|194408972|gb|ACF69191.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|199604536|gb|EDZ03081.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205337307|gb|EDZ24071.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|198241756|ref|YP_002218172.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197936272|gb|ACH73605.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326625971|gb|EGE32316.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|169861584|ref|XP_001837426.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116501447|gb|EAU84342.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 245

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C   CPVDAI
Sbjct: 144 ERCIACKL--CEAICPAQAITIESEARQDGSRKTTKYDIDMTKCIYCGFCAEACPVDAI 200



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  ++E   +
Sbjct: 144 ERCIACKLCEAICPAQAITIESEARQD 170



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   E +N 
Sbjct: 185 CIYCGF--CAEACPVDAIVETQNQ 206


>gi|21226713|ref|NP_632635.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
 gi|20905001|gb|AAM30307.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
          Length = 376

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++ T  C LCK   CV  C      E    L I+P++CI C  C   CP DA++
Sbjct: 309 PFINTSKCALCK--ACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAVE 361


>gi|308184080|ref|YP_003928213.1| ferrodoxin [Helicobacter pylori SJM180]
 gi|308060000|gb|ADO01896.1| ferrodoxin [Helicobacter pylori SJM180]
          Length = 83

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+   +I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYSIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|284162362|ref|YP_003400985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012359|gb|ADB58312.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 420

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 23/87 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVD-------------CFYEGENF-----LAIHPDECIDCGV 45
            V ENC  C   +C +VCPV+               Y   +        I PD C  CG 
Sbjct: 111 FVNENCTACG--ECEKVCPVERPNDFDFGMDKTKAIYLPHDMAFPPIYVIDPDVCNKCGE 168

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSE 72
           C   C  DAI  D +P     L IN++
Sbjct: 169 CVKVCKYDAINLDEQPQE---LTINAK 192


>gi|269791990|ref|YP_003316894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099625|gb|ACZ18612.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 57

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + C+ C+   CV VCP       +    ++PD C++CG C   CPV AI
Sbjct: 4  AVVDKDTCVGCE--ACVGVCPTSAISMVDGKAEVNPDACVECGACVATCPVSAI 55


>gi|157157694|ref|YP_001462964.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|238900886|ref|YP_002926682.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|256022666|ref|ZP_05436531.1| hypothetical protein E4_04784 [Escherichia sp. 4_1_40B]
 gi|260843976|ref|YP_003221754.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|260855495|ref|YP_003229386.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|297516334|ref|ZP_06934720.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli OP50]
 gi|300821457|ref|ZP_07101604.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 119-7]
 gi|300930861|ref|ZP_07146230.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 187-1]
 gi|300951260|ref|ZP_07165111.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 116-1]
 gi|300958548|ref|ZP_07170680.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 175-1]
 gi|301647851|ref|ZP_07247635.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 146-1]
 gi|307138328|ref|ZP_07497684.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli H736]
 gi|331677541|ref|ZP_08378216.1| putative oxidoreductase Fe-S subunit [Escherichia coli H591]
 gi|1549282|gb|AAB47947.1| hypothetical protein [Escherichia coli str. K-12 substr. MG1655]
 gi|157079724|gb|ABV19432.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|238862104|gb|ACR64102.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|242377399|emb|CAQ32147.2| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|257754144|dbj|BAI25646.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|257759123|dbj|BAI30620.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|300314793|gb|EFJ64577.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 175-1]
 gi|300449475|gb|EFK13095.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 116-1]
 gi|300461277|gb|EFK24770.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 187-1]
 gi|300525960|gb|EFK47029.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 119-7]
 gi|301074041|gb|EFK88847.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 146-1]
 gi|331074001|gb|EGI45321.1| putative oxidoreductase Fe-S subunit [Escherichia coli H591]
          Length = 239

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|307718918|ref|YP_003874450.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM
          6192]
 gi|306532643|gb|ADN02177.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM
          6192]
          Length = 574

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y VT +C  C    C+  CPV           +  + C+ CG C   CP  A
Sbjct: 8  YTVTSDCFDC--YKCIRECPVKAIRISGGRAEVVEELCLYCGHCVEVCPSGA 57


>gi|304391506|ref|ZP_07373448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303295735|gb|EFL90093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 273

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  +  D+CI CG+C   C   A + D   G
Sbjct: 98  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVDEDKCIGCGLCAWSCAYGAREMDAAAG 154


>gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 619

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           +T+V+  E C  C    C   CP      GE  +   I   +CI CG C   C  DAI 
Sbjct: 562 LTFVIDKEKCNGCG--KCARSCPAGAIT-GEKKMPHEIDITKCIKCGACLAGCKFDAIY 617



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CP     E   F  I  ++C  CG C   CP  AI  + +   E+ +
Sbjct: 553 CPAGACTELLTF-VIDKEKCNGCGKCARSCPAGAITGEKKMPHEIDI 598


>gi|224583440|ref|YP_002637238.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224467967|gb|ACN45797.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 192

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|218560650|ref|YP_002393563.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia coli
           S88]
 gi|218367419|emb|CAR05201.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli S88]
 gi|294493205|gb|ADE91961.1| 4Fe-4S binding domain protein [Escherichia coli IHE3034]
 gi|307628655|gb|ADN72959.1| putative electron transport protein YsaA [Escherichia coli UM146]
 gi|315285329|gb|EFU44774.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|323949817|gb|EGB45701.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323954882|gb|EGB50662.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 157

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|126700932|ref|YP_001089829.1| electron transport protein [Clostridium difficile 630]
 gi|115252369|emb|CAJ70210.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 171

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP        N + I+ + CI C  C   CP+ AI
Sbjct: 59  CRHCEDAPCAKACPNGGIVRVGNTIKINEENCIGCKTCMLACPIGAI 105


>gi|114320439|ref|YP_742122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226833|gb|ABI56632.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 566

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    C +VCP     +      L    D C+ CG+C+  CP +A+
Sbjct: 425 VNTDACTLC--MACAQVCPSSALTDNPESVQLRFIEDNCVQCGLCQTACPEEAV 476



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 6   TENCIL-----CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ C          T C++ C         + + ++P  C   GVC   CP  A
Sbjct: 183 TDICAHGASGLTGCTRCLDGCTTGAITSLGDMIEVNPYLCQGVGVCVSACPSGA 236



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           P   F E    + ++ D C  C  C   CP  A+  + E     +++ N
Sbjct: 416 PGAPFGE----VLVNTDACTLCMACAQVCPSSALTDNPESVQLRFIEDN 460


>gi|110643822|ref|YP_671552.1| putative electron transport protein YsaA [Escherichia coli 536]
 gi|218691862|ref|YP_002400074.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli ED1a]
 gi|110345414|gb|ABG71651.1| putative electron transport protein YsaA [Escherichia coli 536]
 gi|218429426|emb|CAR10392.2| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli ED1a]
 gi|222035288|emb|CAP78033.1| electron transport protein ysaA [Escherichia coli LF82]
 gi|312948139|gb|ADR28966.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|324007369|gb|EGB76588.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 157

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|124266052|ref|YP_001020056.1| iron-sulfur cluster protein [Methylibium petroleiphilum PM1]
 gi|124258827|gb|ABM93821.1| iron-sulfur cluster protein [Methylibium petroleiphilum PM1]
          Length = 262

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP  A + D E
Sbjct: 111 SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCSWACPYGARELDEE 165


>gi|331648631|ref|ZP_08349719.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
 gi|331042378|gb|EGI14520.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
          Length = 644

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV       + + ++  +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVYALTFQADSVQLNEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|330835151|ref|YP_004409879.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           (SreB-like ferredoxin) [Metallosphaera cuprina Ar-4]
 gi|329567290|gb|AEB95395.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           (SreB-like ferredoxin) [Metallosphaera cuprina Ar-4]
          Length = 274

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  CVEVCPV   F   ++ +  +  +ECI    C   CP  
Sbjct: 90  YNIPINCFHCMNAPCVEVCPVGATFKRTQDGIVLVDYEECIGTKYCIYACPYG 142


>gi|312135108|ref|YP_004002446.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          owensensis OL]
 gi|311775159|gb|ADQ04646.1| Fe-S cluster domain protein [Caldicellulosiruptor owensensis OL]
          Length = 443

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 12 DKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          +  D+C  C  C   CP +AI+
Sbjct: 9  LDKDKCKGCTNCIKRCPTEAIR 30


>gi|302391251|ref|YP_003827071.1| dihydroorotate dehydrogenase family protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203328|gb|ADL12006.1| dihydroorotate dehydrogenase family protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 409

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+ E CI C    C+  C  D       +GE    + PD+C  CG+C   CP +A+  + 
Sbjct: 339 VIPEECIGCG--MCLNWCFYDAISLYEEDGETKAKVDPDKCDHCGLCVSLCPKEALNMEY 396

Query: 60  EPGLEL 65
           E   E 
Sbjct: 397 EDKDEK 402


>gi|257486634|ref|ZP_05640675.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 211

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVAPCPVDCIE 137


>gi|238912647|ref|ZP_04656484.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
          Length = 287

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D  
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDN 213


>gi|218548099|ref|YP_002381890.1| oxidoreductase Fe-S binding subunit [Escherichia fergusonii ATCC
           35469]
 gi|218355640|emb|CAQ88252.1| fused putative oxidoreductase: FeS binding subunit ;
           NAD/FAD-binding subunit [Escherichia fergusonii ATCC
           35469]
          Length = 702

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 99  CHHCEDAPCARSCPNGAISHVNDSVQVNQQKCIGCKSCVIACPFG 143


>gi|168236981|ref|ZP_02662039.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734388|ref|YP_002117213.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194709890|gb|ACF89111.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290036|gb|EDY29395.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus
          ATCC 8482]
 gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus
          ATCC 8482]
          Length = 302

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C++VCP          +     +C+ CG C  ECP  AI+
Sbjct: 53 CLGCG--TCLKVCPNGALTLTPEGIITDKQKCVLCGRCAEECPAMAIE 98



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 21 CPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C           G++ L     +C+ CG C   CP  A
Sbjct: 27 CPLSCIWCHNPEGIRNGKDKLY-TAKKCLGCGTCLKVCPNGA 67


>gi|126664781|ref|ZP_01735765.1| formate dehydrogenase, iron-sulfur subunit, putative
          [Marinobacter sp. ELB17]
 gi|126631107|gb|EBA01721.1| formate dehydrogenase, iron-sulfur subunit, putative
          [Marinobacter sp. ELB17]
          Length = 134

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 18 VEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          + VCP DCFY+ E+ + +H  D CI CG C   CP  A + 
Sbjct: 1  MAVCPTDCFYQTEDGIVLHSKDLCIGCGYCFYACPFGAPQF 41


>gi|91772648|ref|YP_565340.1| nitrite and sulphite reductase [Methanococcoides burtonii DSM 6242]
 gi|91711663|gb|ABE51590.1| coenzyme F420-dependent sulfite reductase [Methanococcoides
           burtonii DSM 6242]
          Length = 639

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE C  C    C E+C ++          I  D CI+CG C   CP +A   + + G 
Sbjct: 514 VDTEKCTGCG--RCSELCKLNAISVISGKAVIDRDLCINCGWCVRGCPHEAAV-EDQKGY 570

Query: 64  ELWLKIN 70
            +W+  N
Sbjct: 571 SVWIGGN 577



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    C  CG C   CP + I+ D    
Sbjct: 13 VVDTGMCTLCGACAAVCPYEIIEFDENGP 41


>gi|16767529|ref|NP_463144.1| formate-dependent nitrite reductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991482|ref|ZP_02572581.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168466975|ref|ZP_02700823.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821264|ref|ZP_02833264.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197263392|ref|ZP_03163466.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|16422839|gb|AAL23103.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|195630636|gb|EDX49248.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241647|gb|EDY24267.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205330187|gb|EDZ16951.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205342069|gb|EDZ28833.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261249378|emb|CBG27241.1| cytochrome C-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996599|gb|ACY91484.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160771|emb|CBW20302.1| 4Fe-4S subunit, subunit of nitrite reductase complex [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312915383|dbj|BAJ39357.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088687|emb|CBY98445.1| Uncharacterized ferredoxin-like protein ydhX [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223150|gb|EFX48220.1| NrfC protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323132620|gb|ADX20050.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991095|gb|AEF10078.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|15668692|ref|NP_247491.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474782|sp|P81292|Y51A_METJA RecName: Full=Uncharacterized polyferredoxin-like protein
          MJ0514.1
 gi|2826292|gb|AAB98510.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 163

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          + CI C    C+E+CPV+      + L I  + ++C+ CG C+  CP +AI
Sbjct: 37 DKCISCG--KCIEICPVNAITYSSDGLYITINKEKCVFCGKCKKVCPTNAI 85



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++E C  C    C+  CP +   E  + + I  ++C  CG CE  CP++AI
Sbjct: 112 ISERCASCLV--CLRNCPFNAIEEYGSKIRIDINKCELCGKCEEICPLNAI 160



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
          D+CI CG C   CPV+AI   ++    L++ IN E
Sbjct: 37 DKCISCGKCIEICPVNAITYSSDG---LYITINKE 68



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 22/81 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCF---------YEGENFLAIHPDECID--------CGVCEPE 49
           E C+ C    C +VCP +            E    + +   E ID        C VC   
Sbjct: 68  EKCVFCG--KCKKVCPTNAIVIIRLRCEINEDARIIEVDKYEFIDYISERCASCLVCLRN 125

Query: 50  CPVDAIKPDTEPGLELWLKIN 70
           CP +AI+   E G ++ + IN
Sbjct: 126 CPFNAIE---EYGSKIRIDIN 143


>gi|194289253|ref|YP_002005160.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193223088|emb|CAQ69093.1| FERREDOXIN [4FE-4S] PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 273

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  + PD C  C +C P CPVD I
Sbjct: 88  CIGC--TLCIQACPVDAIAGAAKQMHTVIPDLCTGCDLCVPPCPVDCI 133



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 83  IDESLCIGCTLCIQACPVDAI 103


>gi|319428519|gb|ADV56593.1| surface localized dimethyl sulfoxide reductase, ferredoxin subunit,
           DmsB [Shewanella putrefaciens 200]
          Length = 225

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y  +  C  C    CV+ CP    +   ++ L  I    CI C  C   CP DA + D 
Sbjct: 78  AYYASVGCNHCSEPVCVKACPTGAMHKRAKDGLVLIEESLCIGCESCSRACPYDAPQIDI 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|56416077|ref|YP_153152.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161617418|ref|YP_001591383.1| hypothetical protein SPAB_05274 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168231287|ref|ZP_02656345.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194470140|ref|ZP_03076124.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197365004|ref|YP_002144641.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|238912736|ref|ZP_04656573.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56130334|gb|AAV79840.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161366782|gb|ABX70550.1| hypothetical protein SPAB_05274 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456504|gb|EDX45343.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197096481|emb|CAR62088.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|205334315|gb|EDZ21079.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|89896192|ref|YP_519679.1| hypothetical protein DSY3446 [Desulfitobacterium hafniense Y51]
 gi|219668017|ref|YP_002458452.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89335640|dbj|BAE85235.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538277|gb|ACL20016.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 239

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC--EPECPVDAIKPDTE 60
          E C+ C   +C+  CP+     G +   I+ DEC++CG+C  + ECPV+A     E
Sbjct: 6  ELCLSCG--ECLPYCPMGAIEMG-DTAQINQDECVECGICIRQIECPVEAFYEPAE 58



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I+ + C+ CG C P CP+ AI+   
Sbjct: 3  INEELCLSCGECLPYCPMGAIEMGD 27


>gi|295107537|emb|CBL05080.1| formate dehydrogenase beta subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 307

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +C  C    C  +CP      +E    + +   +CI C  C   CP D  + 
Sbjct: 78  SCQHCTDAACATICPAGAITKHEATGLVTVDDSKCIGCQYCSTACPFDVPRY 129


>gi|253989007|ref|YP_003040363.1| NADH dehydrogenase subunit I [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780457|emb|CAQ83619.1| NADH-quinone oxidoreductase subunit I [Photorhabdus asymbiotica]
          Length = 180

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|239995948|ref|ZP_04716472.1| electron transport complex protein RnfB [Alteromonas macleodii ATCC
           27126]
          Length = 193

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 111 AFIREDECIGC--TKCIQACPVDAILGAAKHMHTVITDECTGCDLCVDPCPVDCI 163



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +  E+      I  DECI C  C   CPVDAI
Sbjct: 93  VEPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAI 133



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C    CV+ CPVDC 
Sbjct: 140 MHTVITDECTGCDL--CVDPCPVDCI 163


>gi|197251255|ref|YP_002149193.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214958|gb|ACH52355.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|191173211|ref|ZP_03034742.1| protein aegA [Escherichia coli F11]
 gi|300995683|ref|ZP_07181211.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           200-1]
 gi|190906462|gb|EDV66070.1| protein aegA [Escherichia coli F11]
 gi|300304791|gb|EFJ59311.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           200-1]
 gi|323188716|gb|EFZ74001.1| hypothetical protein ECRN5871_3136 [Escherichia coli RN587/1]
 gi|324011765|gb|EGB80984.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           60-1]
          Length = 644

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV       + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVYALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|317484216|ref|ZP_07943145.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924565|gb|EFV45722.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 240

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    CV+ CP    Y+ E+ +  +    CI CG C   CP  A
Sbjct: 56  ACMHCDEPSCVDACPTHATYKAEDGVVMVDETRCIACGSCMRACPYQA 103


>gi|299771412|ref|YP_003733438.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1]
 gi|298701500|gb|ADI92065.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1]
          Length = 180

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 LTPDFELGEYV 126


>gi|226953545|ref|ZP_03824009.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244]
 gi|294649467|ref|ZP_06726891.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835723|gb|EEH68106.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244]
 gi|292824637|gb|EFF83416.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 180

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 MTPDFELAEYV 126


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++YV+  + C  C  T C   CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 539 LSYVIDRDKCRGC--TLCARTCPAGAIVGSVKNPHVIDLNKCIKCGACMEKCKFGAIY 594



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I  D+C  C +C   CP  AI
Sbjct: 530 CPAG-VCKALLSYVIDRDKCRGCTLCARTCPAGAI 563


>gi|254427723|ref|ZP_05041430.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
 gi|196193892|gb|EDX88851.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
          Length = 194

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I   + 
Sbjct: 109 AYIREDECIGC--TKCIQACPVDAIVGAAKLMHTVIVDECTGCDLCVEPCPVDCIDMLEV 166

Query: 60  EPGLELW 66
           +  L+ W
Sbjct: 167 KQTLQTW 173


>gi|204926813|ref|ZP_03218015.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323478|gb|EDZ08673.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|304314560|ref|YP_003849707.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
 gi|5734542|emb|CAB52771.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588019|gb|ADL58394.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
          Length = 340

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           YV+ +  CI C    C++ CPVD   E +  + I    CI CG C  +CPV
Sbjct: 125 YVIDDYLCIRC--RKCMKACPVDAIVEEDGRVEIDQSRCIACGDCLEKCPV 173



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 18/72 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCE 47
           +V   CI C    C EVCP D                     E    I    CI C  C 
Sbjct: 82  IVRGACIRCGF--CAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCRKCM 139

Query: 48  PECPVDAIKPDT 59
             CPVDAI  + 
Sbjct: 140 KACPVDAIVEED 151



 Score = 41.3 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           E C+ C    CV+ CP       E+  +   P++C+ C  C   CP  
Sbjct: 263 EKCVQC--RLCVDECPSGAITYSEDEGVVRDPEKCLRCSTCYQTCPFG 308



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 13/58 (22%)

Query: 7   ENCILCKHTDCVEVCPV-DCFY----------EGENFLAIHPDECIDCGVCEPECPVD 53
           E CI C    C   CP                EG  +  I    CI CG C   CP D
Sbjct: 45  EYCIGCG--ACTTACPAPGAIKLVRDTDTSEEEGLTYPVIVRGACIRCGFCAEVCPTD 100



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPG 62
           P++C+ C +C  ECP  AI    + G
Sbjct: 262 PEKCVQCRLCVDECPSGAITYSEDEG 287



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 31 NFLAIHPDECIDCGVCEPECPV-DAIK 56
          +F  +H + CI CG C   CP   AIK
Sbjct: 38 DFPTVHKEYCIGCGACTTACPAPGAIK 64


>gi|17230004|ref|NP_486552.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|423971|pir||A47082 probable transcription regulator PatB - Anabaena sp
 gi|142067|gb|AAB59013.1| PatB [Nostoc sp. PCC 7120]
 gi|17131604|dbj|BAB74211.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 529

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M Y +  N C+ C   +C   CP        N   I P  C +C G      C   CPV 
Sbjct: 1  MPYTIPNNSCVGCD--NCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVK 58

Query: 54 AIKP 57
          +  P
Sbjct: 59 SPIP 62



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            I  + C+ C  C P+CP  AIK +     
Sbjct: 3  YTIPNNSCVGCDNCRPQCPTGAIKIENNKYW 33


>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 639

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C  T C   CPV+  Y E +    I    CI CG C   C  DA++
Sbjct: 578 IIQEACKGC--TVCALKCPVNAIYGERKKPHVIDQSACIKCGACLEVCKFDAVR 629



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 17/63 (26%)

Query: 3   YVVTENCIL--CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +VV + C    CK                     I  + C  C VC  +CPV+AI  + +
Sbjct: 559 HVVNKRCPGKVCKDLI---------------QYVIIQEACKGCTVCALKCPVNAIYGERK 603

Query: 61  PGL 63
              
Sbjct: 604 KPH 606


>gi|331659015|ref|ZP_08359957.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
 gi|315295673|gb|EFU54993.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli MS
           16-3]
 gi|331053597|gb|EGI25626.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
          Length = 644

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV       + + ++  +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVYALTFQADSVQLNEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|307262756|ref|ZP_07544383.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871901|gb|EFN03618.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 196

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  + PD C  C +C   CP + I+
Sbjct: 107 DMCIGC--TKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIE 155



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           IH D CI C  C   CPVDAI
Sbjct: 104 IHEDMCIGCTKCIQACPVDAI 124


>gi|205355049|ref|YP_002228850.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274830|emb|CAR39890.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|204929685|ref|ZP_03220759.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|204321404|gb|EDZ06604.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|322613728|gb|EFY10667.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322619529|gb|EFY16405.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322625034|gb|EFY21863.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322629523|gb|EFY26299.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322634046|gb|EFY30783.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|322635516|gb|EFY32227.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322639808|gb|EFY36487.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322644430|gb|EFY40971.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322648575|gb|EFY45024.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322655205|gb|EFY51514.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322658252|gb|EFY54518.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322664253|gb|EFY60450.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322669420|gb|EFY65569.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322673147|gb|EFY69253.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322676539|gb|EFY72607.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322683289|gb|EFY79303.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322685825|gb|EFY81818.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|323194768|gb|EFZ79956.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323199544|gb|EFZ84635.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323204681|gb|EFZ89679.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323208129|gb|EFZ93074.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323210147|gb|EFZ95048.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323217015|gb|EGA01737.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323221813|gb|EGA06217.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323225008|gb|EGA09263.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323229297|gb|EGA13421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323235388|gb|EGA19472.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323237426|gb|EGA21489.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323245180|gb|EGA29181.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
 gi|323248883|gb|EGA32809.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323253170|gb|EGA37002.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323255404|gb|EGA39172.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323262037|gb|EGA45602.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266348|gb|EGA49836.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323269821|gb|EGA53271.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
          Length = 287

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D  
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDN 213


>gi|62182728|ref|YP_219145.1| putative nitrite reductase; formate-dependent, Fe-S centers
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224586045|ref|YP_002639844.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62130361|gb|AAX68064.1| putative nitrite reductase; formate-dependent, Fe-S centers
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224470573|gb|ACN48403.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322717228|gb|EFZ08799.1| Protein nrfC [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|326630202|gb|EGE36545.1| putative nitrite reductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|83590232|ref|YP_430241.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573146|gb|ABC19698.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 195

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
            Y ++ +C  C+   CV+ CP     +      + +  ++CI C  C   CP  A + 
Sbjct: 61  AYWISLSCNHCQDPPCVKNCPTGAMQKRPEDGIVFVDQNKCIGCRYCVWSCPYGAPQY 118


>gi|89897650|ref|YP_521137.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89337098|dbj|BAE86693.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 204

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  C   CPV   Y  E+    I  D CI C  C   CP DA
Sbjct: 65  CNHCDNAPCESACPVRATYRTEDGTILIDYDRCIGCKYCMAACPYDA 111


>gi|28898877|ref|NP_798482.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260362455|ref|ZP_05775396.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
 gi|260879450|ref|ZP_05891805.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|260897153|ref|ZP_05905649.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|260902710|ref|ZP_05911105.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|33301642|sp|Q87MX3|RNFB_VIBPA RecName: Full=Electron transport complex protein rnfB
 gi|28807096|dbj|BAC60366.1| RnfB-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087155|gb|EFO36850.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|308093524|gb|EFO43219.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109013|gb|EFO46553.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113332|gb|EFO50872.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
          Length = 198

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
           +T      W ++N+
Sbjct: 165 ETTTDSWKW-QLNA 177


>gi|113972044|ref|YP_735837.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886728|gb|ABI40780.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 553

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + + P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEVDPYLCHGAGSCSSACPTGAIGYDLPTPQALHSYLNKIINRY 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267


>gi|322615434|gb|EFY12354.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618494|gb|EFY15383.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622094|gb|EFY18944.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627165|gb|EFY23957.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631125|gb|EFY27889.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637657|gb|EFY34358.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642468|gb|EFY39069.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643657|gb|EFY40211.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648271|gb|EFY44731.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654683|gb|EFY51003.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659643|gb|EFY55886.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662148|gb|EFY58364.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666106|gb|EFY62284.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672526|gb|EFY68637.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675955|gb|EFY72026.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680440|gb|EFY76478.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684666|gb|EFY80670.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194656|gb|EFZ79847.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323201742|gb|EFZ86806.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206256|gb|EFZ91218.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213267|gb|EFZ98069.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215638|gb|EGA00382.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222060|gb|EGA06446.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227927|gb|EGA12081.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229096|gb|EGA13225.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236294|gb|EGA20370.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237586|gb|EGA21647.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241748|gb|EGA25777.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248105|gb|EGA32042.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254565|gb|EGA38376.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258375|gb|EGA42052.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259655|gb|EGA43289.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265928|gb|EGA49424.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270370|gb|EGA53818.1| putative formate-dependent nitrite reductase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 223

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|320101426|ref|YP_004177018.1| ABC transporter-like protein [Desulfurococcus mucosus DSM 2162]
 gi|319753778|gb|ADV65536.1| ABC transporter related protein [Desulfurococcus mucosus DSM
          2162]
          Length = 602

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 17 CVEVCPVDCFYE-------GENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C+  CPV+           G+N    I  D CI CG+C  +CP  AI     P  
Sbjct: 21 CIRFCPVNRGRRKKAIELSGDNKYVVISEDACIGCGICVKKCPFHAISIVNLPDE 75


>gi|307299220|ref|ZP_07579021.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915016|gb|EFN45402.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 359

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CVEVCP       +  + +   EC  CG+CE  CPV AI
Sbjct: 309 DKCTRCGL--CVEVCPYFALSL-QEKVEVDSAECFGCGLCESICPVAAI 354



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 34  AIHPDECIDCGVCEPECPVDA 54
            I  D+C  CG+C   CP  A
Sbjct: 305 VIDHDKCTRCGLCVEVCPYFA 325


>gi|168818248|ref|ZP_02830248.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344912|gb|EDZ31676.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086497|emb|CBY96268.1| Protein nrfC homolog Flags: Precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 192

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|154150816|ref|YP_001404434.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999368|gb|ABS55791.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 128

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           V T  C+ C    C+ +CP + F ++ +  LAI  D CI CG C P CP  A
Sbjct: 74  VNTSECVDCG--ACISICPREVFSFDTDWKLAIAEDRCIVCGKCVPACPHSA 123



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E+ + ++  EC+DCG C   CP +    DT+
Sbjct: 69 EHGINVNTSECVDCGACISICPREVFSFDTD 99


>gi|153835285|ref|ZP_01987952.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio harveyi HY01]
 gi|148868221|gb|EDL67367.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio harveyi HY01]
          Length = 228

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 143


>gi|146312604|ref|YP_001177678.1| putative oxidoreductase Fe-S binding subunit [Enterobacter sp. 638]
 gi|145319480|gb|ABP61627.1| glutamate synthase, small subunit [Enterobacter sp. 638]
          Length = 658

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C++  C + CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCENAPCAQRCPNGAIARINDSVQVNQQKCIGCKACVVACPFG 100


>gi|94676609|ref|YP_588818.1| NADH dehydrogenase subunit I [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|110287758|sp|Q1LT96|NUOI_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|94219759|gb|ABF13918.1| NADH-quinone oxidoreductase, chain I [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 180

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         EG     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCISLQKTESKEGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMAEF 125


>gi|293609132|ref|ZP_06691435.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829705|gb|EFF88067.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 180

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 LTPDFELGEYV 126


>gi|283853304|ref|ZP_06370553.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
 gi|283571285|gb|EFC19296.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
          Length = 421

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 9  CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CI C    C+  CP        GE    + P+ CI CG C   CP  AI  +
Sbjct: 35 CIGCD--ACLSYCPTGAIVGEMGEPHKIVAPEACIHCGQCLTHCPQGAIYEE 84



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          F+ +   +CI C  C   CP  AI  +     +
Sbjct: 27 FVQVDESKCIGCDACLSYCPTGAIVGEMGEPHK 59


>gi|110643035|ref|YP_670765.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli 536]
 gi|110344627|gb|ABG70864.1| hypothetical protein YgfT (putative pyridine nucleotide-disulphide
           oxidoreductase) [Escherichia coli 536]
          Length = 639

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV       + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVYALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|94309960|ref|YP_583170.1| ferredoxin [Cupriavidus metallidurans CH34]
 gi|93353812|gb|ABF07901.1| electron transport complex, RnfABCDGE type, B subunit [Cupriavidus
           metallidurans CH34]
          Length = 279

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++ CPVD        +  + PD C  C +C   CPVD I+
Sbjct: 91  CIGC--TLCIQACPVDAIVGAPKQMHTVLPDWCTGCDLCVTPCPVDCIE 137



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 86  IEESLCIGCTLCIQACPVDAI 106


>gi|304314315|ref|YP_003849462.1| glutamate synthase, large subunit [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587774|gb|ADL58149.1| predicted glutamate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 619

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    C  VCP D     E+   I   +CI CG C   CPV
Sbjct: 167 CVFCG--TCEIVCPTDAIEIVEDHAEIDKTKCIMCGSCLAACPV 208



 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    C   C  D        + I  + C+ C +C   CP+ AI    +
Sbjct: 45 CQQCVDPSCARGCFRDAIQRENGAVKIDQESCVGCKLCMLMCPIGAITYTDD 96



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI----DCGVCEPEC 50
           E+C+ CK   C+ +CP+      ++ +     +C+    D   C   C
Sbjct: 74  ESCVGCKL--CMLMCPIGAITYTDDGMVKCDQQCMESPGDTPACVAAC 119



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 40  CIDCGVCEPECPVDAIK 56
           C+ CG CE  CP DAI+
Sbjct: 167 CVFCGTCEIVCPTDAIE 183


>gi|295106689|emb|CBL04232.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
          pamelaeae 7-10-1-b]
          Length = 171

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 3  YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +VV   C+ C++  C+  C V+   +   +  + I  ++CI C  C   CP  A      
Sbjct: 19 HVVPMLCMHCENAPCIAACAVEGATYKRDDGIVMIDKEKCIGCKACITACPYAARYYVES 78

Query: 61 PGLELWLKINSEYATQWPN 79
           G     ++N   A  +P 
Sbjct: 79 EGGYFGSELNEYEALMYPT 97


>gi|257452669|ref|ZP_05617968.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 580

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 526 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 577


>gi|160934825|ref|ZP_02082211.1| hypothetical protein CLOLEP_03700 [Clostridium leptum DSM 753]
 gi|156866278|gb|EDO59650.1| hypothetical protein CLOLEP_03700 [Clostridium leptum DSM 753]
          Length = 580

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI CK   C+ + CP     + +    I   +C+ CGVCE  CP  AI
Sbjct: 525 VDNDKCIGCK--ACMAIGCP--AISQRDGKAVIDRTQCVGCGVCEGLCPKQAI 573


>gi|322378418|ref|ZP_08052872.1| ferredoxin [Helicobacter suis HS1]
 gi|322380977|ref|ZP_08055039.1| ferredoxin [Helicobacter suis HS5]
 gi|321146595|gb|EFX41433.1| ferredoxin [Helicobacter suis HS5]
 gi|321149174|gb|EFX43620.1| ferredoxin [Helicobacter suis HS1]
          Length = 97

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+ +V + CI C    C E CP D   + +   +I PD C +C G      C   CPVDA
Sbjct: 15 MSLLVNQECIACD--ACREECPTDAIDQDDPIYSIDPDRCTECVGYSDEPGCVSVCPVDA 72

Query: 55 IKPD 58
          I  D
Sbjct: 73 IILD 76



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 39 ECIDCGVCEPECPVDAIKPDTE 60
          ECI C  C  ECP DAI  D  
Sbjct: 22 ECIACDACREECPTDAIDQDDP 43


>gi|319760609|ref|YP_004124547.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039323|gb|ADV33873.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 181

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 59  ERCVACNL--CAVSCPVGCISLKKSETIDGRWYPDFFRINFSRCIFCGMCEEACPTAAIQ 116

Query: 57  PDTEPGLELW 66
             ++  +  +
Sbjct: 117 LISDFEMSDF 126


>gi|253572693|ref|ZP_04850094.1| quinone oxidoreductase [Bacteroides sp. 1_1_6]
 gi|251837825|gb|EES65915.1| quinone oxidoreductase [Bacteroides sp. 1_1_6]
          Length = 389

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV 52
          E+C  C  + CV++CP  C    E+   FL   I+ D C++C +CE  CPV
Sbjct: 8  EDCCGC--SACVQICPKCCISMYEDNEGFLYPEINKDICVNCHLCENVCPV 56



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
          I+ ++C  C  C   CP   I    +    L+ +IN +
Sbjct: 5  INKEDCCGCSACVQICPKCCISMYEDNEGFLYPEINKD 42


>gi|239909239|ref|YP_002955981.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio
           magneticus RS-1]
 gi|239799106|dbj|BAH78095.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio
           magneticus RS-1]
          Length = 777

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENF-LAIHPDECIDCGVCEPECP 51
            C  C    C  +CPV        EG+ F +   P++CI CG C   CP
Sbjct: 717 ACRDCGL--CETLCPVGAISRQQKEGKEFAMVSDPEKCIGCGFCANACP 763



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLE 64
            C DCG+CE  CPV AI    + G E
Sbjct: 717 ACRDCGLCETLCPVGAISRQQKEGKE 742


>gi|226330215|ref|ZP_03805733.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
 gi|225201010|gb|EEG83364.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
          Length = 208

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +NCI C  T C++ CPVD        +  +  D C  C +C P CP D I
Sbjct: 115 DNCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVPPCPTDCI 162



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D CI C  C   CPVDAI
Sbjct: 112 IDEDNCIGCTKCIQACPVDAI 132


>gi|239624057|ref|ZP_04667088.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522088|gb|EEQ61954.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 366

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    CV  C            +I    C  CG C   CP+DA+  D   
Sbjct: 188 PHVDAGLCVGCG--ACVRQCAHGAITLESGKASIDTAVCAGCGRCIGTCPMDAVAADNNE 245

Query: 62  GLELWLKINSEYA 74
             ++  K  +EYA
Sbjct: 246 ANDILNKKIAEYA 258


>gi|87118384|ref|ZP_01074283.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
 gi|86166018|gb|EAQ67284.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
          Length = 198

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 112 DECIGC--TKCIQACPVDAILGAAKQMHTVISDECTGCDLCVEPCPVDCI 159



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  DECI C  C   CPVDAI
Sbjct: 108 VIREDECIGCTKCIQACPVDAI 129



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+++ C  C    CVE CPVDC 
Sbjct: 136 MHTVISDECTGCDL--CVEPCPVDCI 159


>gi|170717801|ref|YP_001784864.1| electron transporter subunit RnfB [Haemophilus somnus 2336]
 gi|168825930|gb|ACA31301.1| electron transport complex, RnfABCDGE type, B subunit [Haemophilus
           somnus 2336]
          Length = 196

 Score = 53.6 bits (128), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  E CI C  T C++ CPVD        +  I  D C  C +C   CP D I
Sbjct: 106 AFINEEMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTDCI 158



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
                I+ + CI C  C   CPVDAI
Sbjct: 103 PKVAFINEEMCIGCTKCIQACPVDAI 128


>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. SR1/5]
          Length = 623

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP             I+ D CI CG C+  C  DAI  +
Sbjct: 568 HINPEFCIGCG--KCAKNCPTGAISGKIKHPHVINNDVCIKCGSCKDNCNFDAIYVE 622



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I+P+ CI CG C   CP  AI
Sbjct: 565 RQFHINPEFCIGCGKCAKNCPTGAI 589


>gi|293409983|ref|ZP_06653559.1| ferredoxin protein ydhX [Escherichia coli B354]
 gi|291470451|gb|EFF12935.1| ferredoxin protein ydhX [Escherichia coli B354]
          Length = 239

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|268678907|ref|YP_003303338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616938|gb|ACZ11303.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 190

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++C+ C++T CV VCP    ++ E+ +  +  D C+ C  C   CP  A   D
Sbjct: 58  QSCVHCENTPCVNVCPTHASFKNEDGIVLVDVDLCVGCLYCVAACPYQARYVD 110


>gi|227328565|ref|ZP_03832589.1| electron transport protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 173

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D      + + +    CI C  C   CP  AI
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAI 103



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--------YEGENFL---AIHP-DECIDCGV---CEP 48
           V+   CI CK   CV  CP             EGE  L    +H  D C+D      C  
Sbjct: 83  VIQSRCIGCK--SCVVACPFGAINVVTKSSNNEGEAHLTKSEVHKCDLCVDVAQSPSCVS 140

Query: 49  ECPVDAIKPDTEPGLELW-LKINSEYATQWPN 79
            CP  A++  T   L    L+     A  WP+
Sbjct: 141 VCPTSALRLVTADELRKQTLEKQRRSALGWPS 172


>gi|242766902|ref|XP_002341262.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724458|gb|EED23875.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 225

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 124 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 181

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 182 ESP----------NAEYATETREELLYNKEKLLANGDKWE 211


>gi|218691012|ref|YP_002399224.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           ED1a]
 gi|218428576|emb|CAR09503.2| fused putative oxidoreductase: Fe-S subunit ; nucleotide-binding
           subunit [Escherichia coli ED1a]
          Length = 639

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV       + + ++  +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVYALTFQADSVQLNEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|254448470|ref|ZP_05061930.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
 gi|198261853|gb|EDY86138.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
          Length = 200

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-EPGLE 64
           E CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I  +  +P  +
Sbjct: 115 EGCIGC--TLCIQACPVDAILGAAKQMHTVITDECTGCELCVEPCPVDVITMEDIQPTTQ 172

Query: 65  LW 66
            W
Sbjct: 173 TW 174



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           P+D      +   I  + CI C +C   CPVDAI
Sbjct: 99  PLDAEERPPSVAVIEEEGCIGCTLCIQACPVDAI 132



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C+   CVE CPVD    
Sbjct: 139 MHTVITDECTGCEL--CVEPCPVDVITM 164


>gi|183599995|ref|ZP_02961488.1| hypothetical protein PROSTU_03520 [Providencia stuartii ATCC 25827]
 gi|188022274|gb|EDU60314.1| hypothetical protein PROSTU_03520 [Providencia stuartii ATCC 25827]
          Length = 223

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+H  CV+VCP       +    + ++PD C+ C  C   CP 
Sbjct: 91  SCQHCEHAPCVDVCPTGASFIDKTTGIVDVNPDLCVGCQYCIAACPY 137


>gi|161505257|ref|YP_001572369.1| hypothetical protein SARI_03397 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866604|gb|ABX23227.1| hypothetical protein SARI_03397 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 223

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|170743893|ref|YP_001772548.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168198167|gb|ACA20114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 320

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C +  C+E CP    ++ E + + +  D C  CG C P CP   +
Sbjct: 118 SDVCKHCHNAPCLEACPTGALFKTEFDTVVVQQDICNGCGYCVPACPFGVV 168


>gi|221069698|ref|ZP_03545803.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni KF-1]
 gi|220714721|gb|EED70089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
          testosteroni KF-1]
          Length = 433

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPVD     +N   +  D+C  C  C   CP  +I
Sbjct: 20 EICIRCN--TCEATCPVDAITHDDNNYVVMADKCNGCMDCISPCPTGSI 66



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPVDAI  D  
Sbjct: 17 IDPEICIRCNTCEATCPVDAITHDDN 42


>gi|37526970|ref|NP_930314.1| NADH dehydrogenase subunit I [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81707635|sp|Q7N2J4|NUOI_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|36786403|emb|CAE15456.1| NADH dehydrogenase I chain I (NADH-ubiquinone oxidoreductase chain
           9) (NUO9) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 180

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
 gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
          Length = 594

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 2   TYVVTEN-CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ + ++ C  C  + C   CPVD      +      I  D C++CG+C   C  DAI
Sbjct: 536 THTIMQDTCTGC--SICERYCPVDAITGVIKKPESWVIDHDLCVNCGMCVEVCNSDAI 591


>gi|219670779|ref|YP_002461214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219541039|gb|ACL22778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 201

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  C   CPV   Y  E+    I  D CI C  C   CP DA
Sbjct: 62  CNHCDNAPCESACPVRATYRTEDGTILIDYDRCIGCKYCMAACPYDA 108


>gi|309793436|ref|ZP_07687863.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 145-7]
 gi|308123023|gb|EFO60285.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 145-7]
          Length = 239

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
 gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
          Length = 630

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ + C  C  T C   CP +      +N   I   +CI CGVC   C   AI
Sbjct: 577 IIADKCKGC--TLCARNCPANAITGTVKNPHVIDTTKCIKCGVCMNNCKFGAI 627



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I  D+C  C +C   CP +AI
Sbjct: 574 QYEIIADKCKGCTLCARNCPANAI 597


>gi|300918039|ref|ZP_07134661.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 115-1]
 gi|300414781|gb|EFJ98091.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 115-1]
          Length = 239

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|300904520|ref|ZP_07122360.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 84-1]
 gi|301303184|ref|ZP_07209310.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 124-1]
 gi|300403547|gb|EFJ87085.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 84-1]
 gi|300841593|gb|EFK69353.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 124-1]
 gi|315257527|gb|EFU37495.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 85-1]
          Length = 239

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|291326157|ref|ZP_06123425.2| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rettgeri DSM 1131]
 gi|291315461|gb|EFE55914.1| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rettgeri DSM 1131]
          Length = 161

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           +T +C  C    C++VCP D + +  + + +   ++CI C +C   CP  A   D   G
Sbjct: 31 FITMSCNHCDDPQCLKVCPADTYTKRADGIVVQDHEKCIGCQMCIMACPYHAPVFDPAEG 90


>gi|254502148|ref|ZP_05114299.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222438219|gb|EEE44898.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 134

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 18 VEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          + VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 1  MAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQF 41


>gi|294656335|ref|XP_458595.2| DEHA2D02948p [Debaryomyces hansenii CBS767]
 gi|199431392|emb|CAG86730.2| DEHA2D02948p [Debaryomyces hansenii]
          Length = 243

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 142 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTVKYDIDMTKCIYCGYCQDSCPVDAI 198


>gi|169351160|ref|ZP_02868098.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552]
 gi|169292222|gb|EDS74355.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552]
          Length = 770

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C  C    C  +CP  C       EG  +  I   +CI CG C+ +CPV     +   
Sbjct: 399 DQCTGCG--ACSVICPKQCISMKKNDEGFLYPVIDYHKCIHCGNCQRKCPVKNKYKEDNK 456

Query: 62  GLELWLKINSE 72
             E +  +N +
Sbjct: 457 EPETYACMNKD 467


>gi|168242131|ref|ZP_02667063.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194448056|ref|YP_002046112.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194406360|gb|ACF66579.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338597|gb|EDZ25361.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 192

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|167747724|ref|ZP_02419851.1| hypothetical protein ANACAC_02445 [Anaerostipes caccae DSM 14662]
 gi|167653086|gb|EDR97215.1| hypothetical protein ANACAC_02445 [Anaerostipes caccae DSM 14662]
          Length = 525

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 16  DCVEVCPVDCFYEGENFLA---IHPD-ECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C + CP  C   GEN  +   + PD +CI CG+C   C   AI    E   + +
Sbjct: 404 PCQDACPKKCIKIGENITSLPAVDPDAQCIGCGMCVAACSGQAIFLVNEQFEKDY 458


>gi|262393887|ref|YP_003285741.1| NrfC protein [Vibrio sp. Ex25]
 gi|262337481|gb|ACY51276.1| NrfC protein [Vibrio sp. Ex25]
          Length = 228

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 143


>gi|114049274|ref|YP_739824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890716|gb|ABI44767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 553

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 418 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVI 469



 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + + P  C   G C   CP  AI  D      L   +N      
Sbjct: 198 CLNFCPADAISSVAKKIEVDPYLCHGAGSCSSACPTGAIGYDLPTPQALHSYLNKIINRY 257

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 258 REQAQTAPVI 267


>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
 gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
          Length = 301

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    CVE CP        + + +    C+ CGVC   CP  A++
Sbjct: 53  DRCIGCG--RCVESCPHKALSFVNDGVHVDLSRCVGCGVCASVCPSLALE 100


>gi|295394365|ref|ZP_06804589.1| formate dehydrogenase-N, beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972717|gb|EFG48568.1| formate dehydrogenase-N, beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 356

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+   +
Sbjct: 158 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQNDVCNGCGTCVAGCPFGVIERRDD 213


>gi|300901520|ref|ZP_07119591.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 198-1]
 gi|284921593|emb|CBG34665.1| putative oxidoreductase Fe-S subunit [Escherichia coli 042]
 gi|300355050|gb|EFJ70920.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 198-1]
          Length = 239

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|167551004|ref|ZP_02344759.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205324031|gb|EDZ11870.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 192

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|161502772|ref|YP_001569884.1| hypothetical protein SARI_00823 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864119|gb|ABX20742.1| hypothetical protein SARI_00823 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 198

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 69  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 114


>gi|51473963|ref|YP_067720.1| NADH dehydrogenase subunit I [Rickettsia typhi str. Wilmington]
 gi|81389938|sp|Q68VV4|NUOI_RICTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|51460275|gb|AAU04238.1| NADH dehydrogenase (ubiquinone) subunit I [Rickettsia typhi str.
           Wilmington]
          Length = 159

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E ++         I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAVCPAQAIVIESDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 58 ERCIACKLCEAVCPAQAIVIESDERDD 84



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|17545725|ref|NP_519127.1| ferredoxin [Ralstonia solanacearum GMI1000]
 gi|17428019|emb|CAD14708.1| probable ferredoxin [4fe-4s] protein [Ralstonia solanacearum
           GMI1000]
          Length = 268

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E CI C  T C++ CPVD           +  D C  C +C   CPVD I  D  P    
Sbjct: 88  ERCIGC--TLCIQACPVDAIVGAPKAMHVVLEDWCTGCDLCVAPCPVDCI--DMVPATGE 143

Query: 66  WLKINS 71
               N+
Sbjct: 144 RTGWNA 149



 Score = 41.3 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I P+ CI C +C   CPVDAI
Sbjct: 85  IDPERCIGCTLCIQACPVDAI 105


>gi|327542557|gb|EGF29031.1| molybdopterin oxidoreductase, iron sulfur subunit [Rhodopirellula
           baltica WH47]
          Length = 598

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIH-PDECIDCGVCEPECPVDAIKP 57
           VT  C  C+   C+  CPV  + +     +  H  D+CI C  C   CP +  K 
Sbjct: 151 VTTACHHCEDPGCLNGCPVKAYDKDPETGIVRHLDDQCIGCKYCTMMCPYEVPKY 205


>gi|325833701|ref|ZP_08166116.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325485241|gb|EGC87711.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 381

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 3  YVVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+ ++ C++ ++       C + CP    +   N L +  + C+ CG C   CPV+A+ P
Sbjct: 20 YLASDRCVVVRNRHASCAKCADACPTGSVFAANNVLELDGEGCVACGACTTVCPVEALIP 79

Query: 58 DTEPGLEL 65
                +L
Sbjct: 80 LRPLDEDL 87



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGEN-FLAIHPDECIDCGVCEPEC 50
           T+ C  C    C   CP            EGE  FL     +C+ C +C   C
Sbjct: 290 TQACSSCN--MCTVFCPTGALRKSELVPAEGEGSFLEFSAADCVQCNLCADAC 340


>gi|187733460|ref|YP_001881530.1| formate hydrogenlyase subunit B [Shigella boydii CDC 3083-94]
 gi|187430452|gb|ACD09726.1| formate hydrogenlyase, subunit B [Shigella boydii CDC 3083-94]
 gi|320173423|gb|EFW48622.1| Formate hydrogenlyase subunit 2 [Shigella dysenteriae CDC
          74-1112]
 gi|320186510|gb|EFW61238.1| Formate hydrogenlyase subunit 2 [Shigella flexneri CDC 796-83]
          Length = 203

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QLCHHCEDAPCAVVCPVNVITRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|200387861|ref|ZP_03214473.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604959|gb|EDZ03504.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 192

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|167991837|ref|ZP_02572936.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|205329900|gb|EDZ16664.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar 4,[5],12:i:- str. CVM23701]
 gi|332989454|gb|AEF08437.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. UK-1]
          Length = 287

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C +C    C   CP +     +N L I    C  CG C   CP  A++
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALR 238


>gi|74316399|ref|YP_314139.1| ferredoxin protein [Thiobacillus denitrificans ATCC 25259]
 gi|74055894|gb|AAZ96334.1| probable ferredoxin protein [Thiobacillus denitrificans ATCC
          25259]
          Length = 83

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 13/76 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C+  CP +   +G+    I P++C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CLPECPNEAISQGDEIYIIDPNKCTECVGHFDTPQCVEVCPVDC 58

Query: 55 I-----KPDTEPGLEL 65
          I      P+T   L+ 
Sbjct: 59 IPKNPSYPETPEQLQE 74


>gi|82777147|ref|YP_403496.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|188496456|ref|ZP_03003726.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|256018135|ref|ZP_05432000.1| putative oxidoreductase, Fe-S subunit [Shigella sp. D9]
 gi|293446045|ref|ZP_06662467.1| ferredoxin-like protein ydhX [Escherichia coli B088]
 gi|300819572|ref|ZP_07099765.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 107-1]
 gi|300924703|ref|ZP_07140651.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 182-1]
 gi|301326568|ref|ZP_07219907.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 78-1]
 gi|331653069|ref|ZP_08354074.1| putative oxidoreductase Fe-S subunit [Escherichia coli M718]
 gi|332279180|ref|ZP_08391593.1| conserved hypothetical protein [Shigella sp. D9]
 gi|81241295|gb|ABB62005.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|188491655|gb|EDU66758.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|291322875|gb|EFE62303.1| ferredoxin-like protein ydhX [Escherichia coli B088]
 gi|300419130|gb|EFK02441.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 182-1]
 gi|300527820|gb|EFK48882.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 107-1]
 gi|300846730|gb|EFK74490.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 78-1]
 gi|324016534|gb|EGB85753.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 117-3]
 gi|331049167|gb|EGI21239.1| putative oxidoreductase Fe-S subunit [Escherichia coli M718]
 gi|332101532|gb|EGJ04878.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 239

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|16760995|ref|NP_456612.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16765394|ref|NP_461009.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29141309|ref|NP_804651.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56413035|ref|YP_150110.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167990974|ref|ZP_02572073.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168229378|ref|ZP_02654436.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238800|ref|ZP_02663858.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168259639|ref|ZP_02681612.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194442552|ref|YP_002041331.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194468539|ref|ZP_03074523.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736046|ref|YP_002115097.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250292|ref|YP_002147021.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197265686|ref|ZP_03165760.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197361959|ref|YP_002141596.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|213161811|ref|ZP_03347521.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425575|ref|ZP_03358325.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213583790|ref|ZP_03365616.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213648906|ref|ZP_03378959.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213850286|ref|ZP_03381184.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238913454|ref|ZP_04657291.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|289825943|ref|ZP_06545102.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392917|sp|P0A1I1|PHSB_SALTY RecName: Full=Thiosulfate reductase electron transport protein phsB
 gi|60392918|sp|P0A1I2|PHSB_SALTI RecName: Full=Thiosulfate reductase electron transport protein phsB
 gi|25285316|pir||AC0763 thiosulfate reductase electron transport protein PhsB phsB
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|755677|gb|AAC36935.1| thiosulfate reductase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16420595|gb|AAL20968.1| hydrogen sulfide production iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16503293|emb|CAD02425.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136936|gb|AAO68500.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56127292|gb|AAV76798.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401215|gb|ACF61437.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194454903|gb|EDX43742.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711548|gb|ACF90769.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197093436|emb|CAR58893.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197213995|gb|ACH51392.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243941|gb|EDY26561.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288421|gb|EDY27802.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|205330523|gb|EDZ17287.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205335941|gb|EDZ22705.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205351209|gb|EDZ37840.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|261247278|emb|CBG25102.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994114|gb|ACY88999.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301158625|emb|CBW18136.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913055|dbj|BAJ37029.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224709|gb|EFX49772.1| Thiosulfate reductase electron transport protein phsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130387|gb|ADX17817.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988999|gb|AEF07982.1| thiosulfate reductase electron transport protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 192

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|16761396|ref|NP_457013.1| oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29140907|ref|NP_804249.1| oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213650794|ref|ZP_03380847.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864835|ref|ZP_03386954.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828737|ref|ZP_06546527.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25387629|pir||AC0816 probable oxidoreductase STY2717 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503695|emb|CAD07709.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136532|gb|AAO68098.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 619

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|220931054|ref|YP_002507962.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
 gi|219992364|gb|ACL68967.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
          Length = 571

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1  MTYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  V+T    C  C    C+  CPV      +    +  D CI CG C   CP +A
Sbjct: 1  MGLVITSEAKCRDC--YKCIRYCPVKAIGIKDGQAWVDEDRCILCGRCIEACPQNA 54


>gi|125972856|ref|YP_001036766.1| hydrogenase large subunit-like protein [Clostridium thermocellum
          ATCC 27405]
 gi|256005726|ref|ZP_05430681.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281417055|ref|ZP_06248075.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|125713081|gb|ABN51573.1| hydrogenase large subunit-like protein [Clostridium thermocellum
          ATCC 27405]
 gi|255990299|gb|EEU00426.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281408457|gb|EFB38715.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|316940906|gb|ADU74940.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 1313]
          Length = 448

 Score = 53.6 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 3  YVVTENCILCKH-TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + VT + + CK  T+C++ CP +     ++   I  + CIDCG C   CP  A K  T+P
Sbjct: 6  HSVTLDEVKCKGCTNCIKRCPTEAIRVRKSKARIINERCIDCGECIRVCPYHAKKAITDP 65


>gi|325921027|ref|ZP_08182908.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325548476|gb|EGD19449.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 143

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 85  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 138


>gi|317010558|gb|ADU84305.1| ferrodoxin [Helicobacter pylori SouthAfrica7]
          Length = 83

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYSDEPSCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|283853883|ref|ZP_06371097.1| nitroreductase [Desulfovibrio sp. FW1012B]
 gi|283570725|gb|EFC18771.1| nitroreductase [Desulfovibrio sp. FW1012B]
          Length = 300

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C    CV +CP          L      CI CG CE  CP  A+    +     
Sbjct: 10 AEACQGCG--ACVALCPSGVLAFAGGRLVARQTGCIGCGHCEAVCPAGAVTLPGDDWAAS 67

Query: 66 WLKI 69
          +  I
Sbjct: 68 FSTI 71



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 35 IHPDECIDCGVCEPECPVD 53
          I  + C  CG C   CP  
Sbjct: 8  IDAEACQGCGACVALCPSG 26


>gi|262369340|ref|ZP_06062668.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii
           SH046]
 gi|262315408|gb|EEY96447.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii
           SH046]
          Length = 180

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 MTPDFELGEYV 126


>gi|257466530|ref|ZP_05630841.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 580

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 526 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 577


>gi|242399111|ref|YP_002994535.1| Putative oxidoreductase, Fe-S subunit [Thermococcus sibiricus MM
           739]
 gi|242265504|gb|ACS90186.1| Putative oxidoreductase, Fe-S subunit [Thermococcus sibiricus MM
           739]
          Length = 183

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + C+ C    CV+ CPVD     E    + +  ++CI+CG C   CP    +  T+ G
Sbjct: 62  VPQTCVQCPDYPCVKACPVDALSVNEKTGAVLVDEEKCIECGACITACPGKVPRIPTDKG 121


>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 620

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V  + C+ C    C +VCP D  +   +        C  CG C   CP+ A+ P
Sbjct: 560 ARVEADLCVSCG--ACAKVCPFDAIHRDPSGKFAVDRRCEGCGACLDVCPMGALLP 613



 Score = 40.5 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D C+ CG C   CP DAI  D
Sbjct: 565 DLCVSCGACAKVCPFDAIHRD 585


>gi|268680480|ref|YP_003304911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618511|gb|ACZ12876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 212

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCP        + + +  + CI C +C   CP  AI  D E
Sbjct: 54  CRQCDDAPCANVCPTGALRIANSCVELCEEICIGCKLCTIACPYGAIVIDAE 105


>gi|220905362|ref|YP_002480674.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869661|gb|ACL49996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 653

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C++ CP     E    GE    +    C  CG+C   CP  AI+       +
Sbjct: 585 CVNCG--KCIQCCPFGAIKEVEVRGEGKAQVIETVCQGCGLCTATCPQGAIQLSHATDNQ 642

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 643 ILAEVNA 649



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV    C  C    C E CP     D F E                     I+   C  
Sbjct: 235 TYVDWSLCTGCG--ACTEKCPSKKTPDAFNEEISNTTAITIAFPQAIPKKAVINAGHCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AIK D E  
Sbjct: 293 FIKGKCGVCAKICPTGAIKYDMEDE 317


>gi|212712690|ref|ZP_03320818.1| hypothetical protein PROVALCAL_03787 [Providencia alcalifaciens DSM
           30120]
 gi|212684606|gb|EEB44134.1| hypothetical protein PROVALCAL_03787 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+H  CV+VCP       +    + ++PD C+ C  C   CP 
Sbjct: 91  SCQHCEHAPCVDVCPTGASFIDKTTGIVDVNPDLCVGCQYCIAACPY 137


>gi|296119426|ref|ZP_06837984.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295967309|gb|EFG80576.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 358

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 128 SDVCKHCTNAGCLDVCPTGALFRTEFGTVVVQDDVCNGCGTCVAGCPFGVIE 179


>gi|262165248|ref|ZP_06032985.1| electron transport complex protein RnfB [Vibrio mimicus VM223]
 gi|262024964|gb|EEY43632.1| electron transport complex protein RnfB [Vibrio mimicus VM223]
          Length = 195

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|332086810|gb|EGI91946.1| glutamate synthase [NADPH] small chain [Shigella boydii 5216-82]
          Length = 491

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|323971874|gb|EGB67099.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 219

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C+ C   +CV VCPV    +      +    D C  C  C   CP +  K D
Sbjct: 108 IKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVPKYD 163


>gi|296387990|ref|ZP_06877465.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAb1]
          Length = 188

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I+    
Sbjct: 106 AYIREAECIGC--TKCIQACPVDAIVGAARLMHTVIADECTGCDLCLEPCPVDCIEMRAT 163

Query: 61  PGL 63
           P  
Sbjct: 164 PDD 166



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 22  PVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           P+D   E       I   ECI C  C   CPVDAI
Sbjct: 94  PLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|257790390|ref|YP_003180996.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|257474287|gb|ACV54607.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
          Length = 381

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 3  YVVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+ ++ C++ ++       C + CP    +   N L +  + C+ CG C   CPV+A+ P
Sbjct: 20 YLASDRCVVVRNRHASCAKCADACPTGSVFAANNVLELDGEGCVACGACTTVCPVEALIP 79

Query: 58 DTEPGLEL 65
                +L
Sbjct: 80 LRPLDEDL 87



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGEN-FLAIHPDECIDCGVCEPEC 50
           T+ C  C    C   CP            EGE  FL     +C+ C +C   C
Sbjct: 290 TQACSSCN--MCTVFCPTGALRKSELVPAEGEGSFLEFSAADCVQCNLCADAC 340


>gi|193213037|ref|YP_001998990.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobaculum parvum NCIB 8327]
 gi|193086514|gb|ACF11790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobaculum
           parvum NCIB 8327]
          Length = 199

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEPGL 63
           C+ C++T C+  CP    +  ++ +  ++ D CI C  C   CP DA  P    D E   
Sbjct: 60  CMHCENTPCLSACPTGATHMNDDGIVLVNNDRCIGCYACCIACPYDARYPYDREDVEKEH 119

Query: 64  ELWLK 68
           EL+ +
Sbjct: 120 ELYGE 124


>gi|168261433|ref|ZP_02683406.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|205349505|gb|EDZ36136.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPS 246


>gi|198246136|ref|YP_002216149.1| 4Fe-4S binding domain-containing protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197940652|gb|ACH77985.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326623895|gb|EGE30240.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 192

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|62180643|ref|YP_217060.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168466286|ref|ZP_02700156.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|62128276|gb|AAX65979.1| Hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|195631429|gb|EDX49989.1| 4Fe-4S binding domain protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|322715114|gb|EFZ06685.1| hydrogen sulfide production: iron- sulfur subunit; electron
           transfer [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 192

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|11499962|ref|NP_071208.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650708|gb|AAB91278.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 182

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPD 58
           C  C+H  CV VCP    Y  E+ +  I  D CI C  C   CP  A  I P+
Sbjct: 59  CQHCEHPGCVHVCPTGASYVNEDGIVLIDYDLCIGCKYCMVACPYLARYIHPE 111



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 24/81 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-----PDECIDCG---------VCEPECPV 52
           + CI CK+  C+  CP            IH     PD+C  C           C   CP 
Sbjct: 89  DLCIGCKY--CMVACPYLA-------RYIHPERHTPDKCTFCVHRVKEGKLPACVETCPA 139

Query: 53  DA-IKPDTEPGLELWLKINSE 72
           +A I  D +       K+ +E
Sbjct: 140 NARIFGDLDDPNSEVAKLVAE 160


>gi|312796966|ref|YP_004029888.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312168741|emb|CBW75744.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 355

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ E  CI C  T C++ CPVD        L  +  D C  C +C   CPVD I+
Sbjct: 113 VIDETVCIGC--TLCMQACPVDAIVGAPKQLHTVLADWCTGCDLCVAPCPVDCIE 165



 Score = 41.7 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           P +          I    CI C +C   CPVDAI
Sbjct: 101 PANGVERTRPRAVIDETVCIGCTLCMQACPVDAI 134


>gi|302392270|ref|YP_003828090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204347|gb|ADL13025.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 161

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C E CP       E    + I  D+CI C +C   CP+  I
Sbjct: 53  CLHCEDPSCQEACPTGAINKIEETGAVVIDHDKCIGCNMCMMVCPIGII 101



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV---CEPECPVDAIKPDTEPG 62
           + CI C    C+ VCP+      E   + H  +C  CG    C   CP  A++      
Sbjct: 84  DKCIGCN--MCMMVCPIGIISTAETETSAHNSKCDLCGGEPECVEFCPTGALEYGRPDE 140


>gi|301026855|ref|ZP_07190255.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 69-1]
 gi|300395295|gb|EFJ78833.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 69-1]
          Length = 239

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|291245007|ref|XP_002742384.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 8,
           mitochondrial-like [Saccoglossus kowalevskii]
          Length = 207

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 106 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 162



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   EG NF  
Sbjct: 147 CIYCGY--CQEACPVDAIVEGPNFEY 170



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 106 ERCIACKLCEAICPAQAITIEAEPRAD 132


>gi|227828775|ref|YP_002830555.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|229585982|ref|YP_002844484.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238620967|ref|YP_002915793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|227460571|gb|ACP39257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.14.25]
 gi|228021032|gb|ACP56439.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.27]
 gi|238382037|gb|ACR43125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus M.16.4]
 gi|323475842|gb|ADX86448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus REY15A]
 gi|323478584|gb|ADX83822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus HVE10/4]
          Length = 89

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   C +VCP   +    +   I H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIIVHYERCLECGAALVACPYGAIKFRFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|223041240|ref|ZP_03611489.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           rectus RM3267]
 gi|222877499|gb|EEF12631.1| methyl-accepting chemotaxis sensory transducer [Campylobacter
           rectus RM3267]
          Length = 206

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  C++VCP    Y+  + +  +   ECI C +C   CP  A
Sbjct: 55  CNHCENPACIDVCPTGASYQRNSGIVKVDSAECIGCALCAEACPYHA 101


>gi|200388028|ref|ZP_03214640.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|199605126|gb|EDZ03671.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246


>gi|126207654|ref|YP_001052879.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae L20]
 gi|307256192|ref|ZP_07537979.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|126096446|gb|ABN73274.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|306865373|gb|EFM97269.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 196

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  + PD C  C +C   CP + I+
Sbjct: 107 DMCIGC--TKCIQACPVDAIIGTNKAMHTVIPDLCTGCELCVAPCPTNCIE 155



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           IH D CI C  C   CPVDAI
Sbjct: 104 IHEDMCIGCTKCIQACPVDAI 124


>gi|146312827|ref|YP_001177901.1| electron transport protein HydN [Enterobacter sp. 638]
 gi|145319703|gb|ABP61850.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 181

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP         F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAINRENGFVQVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
 gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
          Length = 600

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           ++T+ C  C  T C   CP +    GE      I  + CI CG C   C  +AI+
Sbjct: 542 IITDKCTGC--TACAIFCPANAIS-GERLKPHFIDQEACIKCGTCYEVCRFNAIE 593



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
             I  D+C  C  C   CP +AI  +
Sbjct: 540 YVIITDKCTGCTACAIFCPANAISGE 565


>gi|32477812|ref|NP_870806.1| oxidoreductase, Fe-S subunit [Rhodopirellula baltica SH 1]
 gi|32448369|emb|CAD77883.1| putative oxidoreductase, Fe-S subunit [Rhodopirellula baltica SH 1]
          Length = 620

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C+  CP    +  E    + +    CI CG C   CP   I+
Sbjct: 502 QACMHCTDPVCMIGCPTGALHREESTGHVRVSESICIGCGTCAKGCPYGNIE 553


>gi|325524747|gb|EGD02729.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Burkholderia sp.
          TJI49]
          Length = 84

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHDESH 69


>gi|325496502|gb|EGC94361.1| oxidoreductase Fe-S binding subunit [Escherichia fergusonii ECD227]
          Length = 659

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVNDSVQVNQQKCIGCKSCVIACPFG 100


>gi|301062518|ref|ZP_07203161.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300443375|gb|EFK07497.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 506

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C+ C    CV  CPV+  +  +    I  D C  CG C   C   A+  D+ P  
Sbjct: 3   VDVEKCVGCGF--CVRDCPVEAVHLVKKKAVI-EDHCTQCGACLKVCEYHALSRDSLPAE 59

Query: 64  ELWLKINSEYATQWPNITTKKESLPSA-AKMDGVKQKY 100
           +  +  ++      P     KE    A  + + V  K 
Sbjct: 60  DA-VACDA-----CPIFCQVKEGYKGACHRFENVGGKL 91


>gi|254496015|ref|ZP_05108918.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
 gi|254354764|gb|EET13396.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
          Length = 204

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C  T C++ CPVD     G+   A+   EC  CG+C   CPVD I
Sbjct: 83  ECIGC--TKCIKACPVDAIIGSGKLMHAVIAHECTGCGLCVAPCPVDCI 129



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 27 YEGENFLAIHPDECIDCGVCEPECPVDAI 55
              +   I   ECI C  C   CPVDAI
Sbjct: 71 TRAPSVAVIREAECIGCTKCIKACPVDAI 99


>gi|226327835|ref|ZP_03803353.1| hypothetical protein PROPEN_01712 [Proteus penneri ATCC 35198]
 gi|225203539|gb|EEG85893.1| hypothetical protein PROPEN_01712 [Proteus penneri ATCC 35198]
          Length = 206

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    +  E +  + ++ D C+ C  CE  CP  A + D 
Sbjct: 60  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVNQDICVGCRYCELRCPYGAPQFDE 119

Query: 60  EPGL 63
           +  L
Sbjct: 120 KKKL 123


>gi|197248415|ref|YP_002147480.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|197212118|gb|ACH49515.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246


>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 623

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  E C  C  + C   CP +    E      I  ++CI CG+C  +C  +AI+
Sbjct: 568 YVINPELCKSC--SLCARACPQNAISGERGKPYVIDQEKCIKCGICFEKCKFNAIE 621



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPD 58
               I+P+ C  C +C   CP +AI  +
Sbjct: 566 KKYVINPELCKSCSLCARACPQNAISGE 593


>gi|186470986|ref|YP_001862304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phymatum STM815]
 gi|184197295|gb|ACC75258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phymatum STM815]
          Length = 246

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    +   E+ L  +  D CI C  C   CP  A + D E
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDYDRCIGCKYCSWACPYGAREIDEE 126


>gi|262393721|ref|YP_003285575.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
 gi|262337315|gb|ACY51110.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
          Length = 198

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   +  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKAVHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|16765847|ref|NP_461462.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|197262713|ref|ZP_03162787.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|16421071|gb|AAL21421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|197240968|gb|EDY23588.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|261247723|emb|CBG25551.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267994646|gb|ACY89531.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 14028S]
 gi|301159076|emb|CBW18590.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312913514|dbj|BAJ37488.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|321222772|gb|EFX47843.1| Putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|323130855|gb|ADX18285.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246


>gi|18313641|ref|NP_560308.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
 gi|18161189|gb|AAL64490.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Pyrobaculum aerophilum str. IM2]
          Length = 188

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C +  CV VCP    Y+  + L  + P+ CI C  C   CP +A   D + GL
Sbjct: 63  CQHCDNAPCVAVCPTGASYKDVDGLVKMRPELCIGCKYCMVACPYEARWLDEDTGL 118


>gi|107023264|ref|YP_621591.1| ferredoxin [Burkholderia cenocepacia AU 1054]
 gi|116690347|ref|YP_835970.1| ferredoxin [Burkholderia cenocepacia HI2424]
 gi|105893453|gb|ABF76618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116648436|gb|ABK09077.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia HI2424]
          Length = 342

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 117 AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCIPPCPVDCIAMLPV 174

Query: 59  --TEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 175 TGDRTGWDAWSQEQADAARE 194


>gi|330506329|ref|YP_004382757.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927137|gb|AEB66939.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 368

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E C  C    C + CP       +    I    C  CG C   CP  A+  D    +  
Sbjct: 192 AELCEGC--RACADGCPNQAITVKKKITQIDYSLCTGCGKCLRLCPAHALDFDWIVEVPP 249

Query: 66  WLKINSEYA 74
           +++   EYA
Sbjct: 250 FMERMVEYA 258


>gi|330468137|ref|YP_004405880.1| formate dehydrogenase subunit beta [Verrucosispora maris AB-18-032]
 gi|328811108|gb|AEB45280.1| formate dehydrogenase subunit beta [Verrucosispora maris AB-18-032]
          Length = 305

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C    C++VCP    +  E   + +  D C  CG C   CP   I    + G
Sbjct: 125 SDVCKHCTRAGCLDVCPTGALFRTEFGTVVVQEDICNGCGYCVSACPYGVIDRRVDDG 182


>gi|327542020|gb|EGF28519.1| cyclic nucleotide-binding protein [Rhodopirellula baltica WH47]
          Length = 620

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C+  CP    +  E    + +    CI CG C   CP   I+
Sbjct: 502 QACMHCTDPVCMIGCPTGALHREESTGHVRVSESICIGCGTCAKGCPYGNIE 553


>gi|323703247|ref|ZP_08114899.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323531803|gb|EGB21690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 234

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC--EPECPVDA 54
          E C+ C    CV  CP+      E+ L+I+ DEC++C +C     CP +A
Sbjct: 6  EKCLGCG--SCVPYCPMRALSIVEDQLSINHDECVECNICYRANVCPTEA 53


>gi|217968655|ref|YP_002353889.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217505982|gb|ACK52993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 215

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            C+ C    C  VCP +   +  + L  I  D CI C  C   CP +A
Sbjct: 57  ACMHCAEPPCAAVCPTEATQKRRDGLVTIDYDVCIGCANCVMACPYEA 104


>gi|217076475|ref|YP_002334191.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
 gi|217036328|gb|ACJ74850.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
          Length = 360

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C LCK   C +VCP       +  + + P++C  CG+CE  CPV AI
Sbjct: 311 EKCTLCK--ICEKVCPYFAITI-DTKVHVDPNKCFGCGLCESRCPVKAI 356


>gi|215486846|ref|YP_002329277.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|215264918|emb|CAS09304.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O127:H6
           str. E2348/69]
          Length = 239

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNIT 81
           +      +  A  +P I 
Sbjct: 167 KCDFCAETRLAKGFPPIC 184


>gi|55742238|ref|NP_001006930.1| NADH dehydrogenase ubiquinone Fe-S 8 [Xenopus (Silurana)
           tropicalis]
 gi|50416643|gb|AAH77660.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
 gi|89271932|emb|CAJ82191.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
          Length = 209

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 108 ERCIACKL--CEAVCPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 164



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + EP
Sbjct: 108 ERCIACKLCEAVCPAQAITIEAEP 131



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 149 CIYCGF--CQEACPVDAIVEGPNF 170


>gi|89092706|ref|ZP_01165659.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92]
 gi|89083218|gb|EAR62437.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92]
          Length = 198

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 108 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIETECTGCDLCVEPCPVDCI 160



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P++   E E       I  DECI C  C   CPVDAI
Sbjct: 90  VEAIPLEGGVEEEPVKKVAYIREDECIGCTKCIQACPVDAI 130


>gi|293414987|ref|ZP_06657630.1| ferredoxin-like protein ydhX [Escherichia coli B185]
 gi|291432635|gb|EFF05614.1| ferredoxin-like protein ydhX [Escherichia coli B185]
          Length = 239

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP      ++   +  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNSVTKVAD 166

Query: 66  WLKINSE--YATQWPNITTKKESLPSAAKMDGVKQKYE 101
                +E   A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|207857499|ref|YP_002244150.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|206709302|emb|CAR33642.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
          Length = 192

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|168238265|ref|ZP_02663323.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|194738104|ref|YP_002115589.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|194713606|gb|ACF92827.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197288840|gb|EDY28213.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246


>gi|167771609|ref|ZP_02443662.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM
           17241]
 gi|167666249|gb|EDS10379.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM
           17241]
          Length = 274

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C   C        +N  +I P++C++CG C   CP  AI
Sbjct: 216 CIGCK--KCERTCEHGAITVTDNLASIDPEKCVNCGNCVTACPTGAI 260



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + DC+  C        +    I    C+ CG+C   CP   I
Sbjct: 144 GYGDCINACQYGAISIVDGIAVIDKAACVGCGMCAKACPNQLI 186


>gi|85860137|ref|YP_462339.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85723228|gb|ABC78171.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 137

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           T+ C+ C    C   CP D  +     +     P+ C  CG+C   CP  A++
Sbjct: 82  TDKCVHCG--ACTAFCPTDALHMDRETMKVVFDPELCNGCGICVTACPARAME 132



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
           + D+C+ CG C   CP DA+  D E
Sbjct: 81  NTDKCVHCGACTAFCPTDALHMDRE 105


>gi|32266484|ref|NP_860516.1| ferredoxin [Helicobacter hepaticus ATCC 51449]
 gi|32262535|gb|AAP77582.1| ferredoxin [Helicobacter hepaticus ATCC 51449]
          Length = 83

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++   CI C    C E CP     EG+   +I PD C +C        C   CPVDA
Sbjct: 1  MSLMINNECIACD--ACAEECPNGAIEEGDPIYSIDPDVCTECVGSYDEPSCLSVCPVDA 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|54309051|ref|YP_130071.1| iron-sulfur cluster-binding protein [Photobacterium profundum SS9]
 gi|46913483|emb|CAG20269.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum SS9]
          Length = 581

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
           T++C LC    CV VCP   F+   G   L +  ++CI CG+CE  CP
Sbjct: 446 TDDCTLC--MSCVAVCPTRAFHAVGGRPGLQLIEEDCIQCGLCEKACP 491



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CV+ CP        + + I+P  C   G C   CP +AI        +
Sbjct: 213 CVDACPAGALSSIGHAIEINPYLCQGVGTCATACPTEAITYALPDPEK 260


>gi|326799008|ref|YP_004316827.1| NAD(P)H-quinone oxidoreductase subunit I [Sphingobacterium sp. 21]
 gi|326549772|gb|ADZ78157.1| NAD(P)H-quinone oxidoreductase subunit I [Sphingobacterium sp. 21]
          Length = 169

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 19/78 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 72  ERCTACGL--CALSCPAEAITMISAERKKGEEHLYREEKYAAVYEINMLRCIFCGLCEEA 129

Query: 50  CPVDAIKPDTEPGLELWL 67
           CP +AI  D       +L
Sbjct: 130 CPKEAIYLDGPHVPADYL 147


>gi|322832829|ref|YP_004212856.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
 gi|321168030|gb|ADW73729.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
          Length = 188

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 AYIDESNCIGC--TKCIQACPVDAIVGATRAVHTVITDLCTGCDLCVAPCPTDCIE 162


>gi|307596266|ref|YP_003902583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551467|gb|ADN51532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 445

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C   +CV  CP +      N + I+   CI+CG+C   CP  A
Sbjct: 115 GCG--ECVNACPANAISIVNNRVTINESACIECGLCVSRCPTGA 156



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAIKPD 58
           +V    C  C    C   CP   F  G +     L ++  +CI CG C   CP  AI  D
Sbjct: 309 HVDDVKCSFCGV--CFAKCPERAFDVGRDGNKTVLKLNNLKCIGCGYCARLCPEKAITVD 366


>gi|302871907|ref|YP_003840543.1| Fe-S cluster domain protein [Caldicellulosiruptor obsidiansis
          OB47]
 gi|302574766|gb|ADL42557.1| Fe-S cluster domain protein [Caldicellulosiruptor obsidiansis
          OB47]
          Length = 443

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 12 DKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          +  D+C  C  C   CP +AI+
Sbjct: 9  LDKDKCKGCTNCIKRCPTEAIR 30


>gi|167549451|ref|ZP_02343210.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|168466721|ref|ZP_02700575.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|168821497|ref|ZP_02833497.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|195630838|gb|EDX49430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|205325401|gb|EDZ13240.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205342030|gb|EDZ28794.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|320087023|emb|CBY96792.1| NADH-quinone oxidoreductase subunits H/I NADH dehydrogenase I
          subunits H/I; NDH-1 subunit H/I [Salmonella enterica
          subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246


>gi|15896602|ref|NP_349951.1| nitroreductase family protein [Clostridium acetobutylicum ATCC
          824]
 gi|15026443|gb|AAK81291.1|AE007833_4 Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum ATCC 824]
 gi|325510763|gb|ADZ22399.1| Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum EA 2018]
          Length = 273

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI C    CV+ C P D     +    I+ + CI CG C   CP++A+  D 
Sbjct: 1  MMTVDIEKCIGCG--KCVKDCFPKD-IEIVDGKAKINNETCIKCGHCIAVCPMNAVSTDD 57

Query: 60 EPGLELWLKINSEYA 74
             +    + N E  
Sbjct: 58 Y-DMSEVKEYNKEEF 71


>gi|3929358|sp|O24143|NDUS8_TOBAC RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|1666177|emb|CAA70326.1| NADH dehydrogenase [Nicotiana tabacum]
          Length = 230

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 185



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 129 ERCIACKLCEAICPAQAITIEAEARED 155



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 170 CIYCGF--CQEACPVDAIVEGPNF 191


>gi|89896267|ref|YP_519754.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219667929|ref|YP_002458364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335715|dbj|BAE85310.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219538189|gb|ACL19928.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           M + +   C+ C ++ CV+ CP     + E+ +  +  ++C+ C  C   CP  A
Sbjct: 52  MVH-IPSLCMHCGNSPCVDACPTGASQQREDGIVWVEENKCVGCKACVMACPYGA 105


>gi|269216660|ref|ZP_06160514.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269129894|gb|EEZ60977.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 181

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
            V+  C  C    C+  CPV  + + EN + +   D CI C  C   CP  A   
Sbjct: 51  FVSMACNHCADPQCLANCPVGAYTKLENGIVVQDHDACIGCQTCVKACPYGAPHY 105


>gi|253989599|ref|YP_003040955.1| electron transport complex protein RnfB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781049|emb|CAQ84211.1| 4Fe-4S ferredoxin, iron-sulphur binding [Photorhabdus asymbiotica]
          Length = 205

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIVGATRAMHTVVEDLCTGCDLCVAPCPTDCI 162


>gi|268589520|ref|ZP_06123741.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
 gi|291315189|gb|EFE55642.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
          Length = 204

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + CI C  C   CPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|254461199|ref|ZP_05074615.1| formate dehydrogenase Fe-S subunit [Rhodobacterales bacterium
          HTCC2083]
 gi|206677788|gb|EDZ42275.1| formate dehydrogenase Fe-S subunit [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 134

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 18 VEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
          + VCPVDCFY+ E  + +H  D CI CG C   CP  A + 
Sbjct: 1  MAVCPVDCFYQNEEGVVLHSKDLCIGCGYCFYACPFGAPQF 41


>gi|168243307|ref|ZP_02668239.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|194449267|ref|YP_002046585.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|198245772|ref|YP_002216591.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|205353626|ref|YP_002227427.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|207857935|ref|YP_002244586.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|194407571|gb|ACF67790.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|197940288|gb|ACH77621.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|205273407|emb|CAR38382.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205337655|gb|EDZ24419.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|206709738|emb|CAR34090.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|326624347|gb|EGE30692.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
 gi|326628726|gb|EGE35069.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246


>gi|289523847|ref|ZP_06440701.1| conserved domain protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289502503|gb|EFD23667.1| conserved domain protein [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 57

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C+   CV VCP +     +    + PD CI+CG C   CPV AI
Sbjct: 9  DTCIGCE--ACVGVCPAEAISIEDGKAKVDPDTCIECGACVSTCPVSAI 55



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDT 59
           +  D CI C  C   CP +AI  + 
Sbjct: 5  VVDRDTCIGCEACVGVCPAEAISIED 30


>gi|224539450|ref|ZP_03679989.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518955|gb|EEF88060.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 325

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVE C  D  +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVEACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKNIIE 189


>gi|161613328|ref|YP_001587293.1| hypothetical protein SPAB_01039 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362692|gb|ABX66460.1| hypothetical protein SPAB_01039 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 192

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|11497792|ref|NP_069014.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650470|gb|AAB91057.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 251

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C+ C +  CV+VCPV   ++ E+ +  +  + CI C  C   CP    + + E   +
Sbjct: 64  PCMHCDNPPCVKVCPVGATWKREDGVVLVDFERCIGCRYCMTACPYGVRQFNWEDKDK 121


>gi|15802083|ref|NP_288105.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           EDL933]
 gi|15831632|ref|NP_310405.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|261227884|ref|ZP_05942165.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258382|ref|ZP_05950915.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282801|ref|YP_003499619.1| hypothetical protein G2583_2066 [Escherichia coli O55:H7 str.
           CB9615]
 gi|12515670|gb|AAG56658.1|AE005390_5 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|13361845|dbj|BAB35801.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|209769268|gb|ACI82946.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769270|gb|ACI82947.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769274|gb|ACI82949.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|290762674|gb|ADD56635.1| Uncharacterized ferredoxin-like protein ydhX [Escherichia coli
           O55:H7 str. CB9615]
 gi|320641885|gb|EFX11253.1| hypothetical protein ECO5101_07322 [Escherichia coli O157:H7 str.
           G5101]
 gi|320647342|gb|EFX16150.1| hypothetical protein ECO9389_09063 [Escherichia coli O157:H- str.
           493-89]
 gi|320652636|gb|EFX20905.1| hypothetical protein ECO2687_03555 [Escherichia coli O157:H- str. H
           2687]
 gi|320653021|gb|EFX21217.1| hypothetical protein ECO7815_12485 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658705|gb|EFX26382.1| hypothetical protein ECO5905_08419 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668695|gb|EFX35500.1| hypothetical protein ECOSU61_21168 [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 239

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|288560652|ref|YP_003424138.1| energy-converting hydrogenase A subunit Q EhaQ
          [Methanobrevibacter ruminantium M1]
 gi|288543362|gb|ADC47246.1| energy-converting hydrogenase A subunit Q EhaQ
          [Methanobrevibacter ruminantium M1]
          Length = 483

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIK 56
          E CI C    C+ VCP+D  Y+ EN   I  DE C  C +C   CP DAI 
Sbjct: 23 EKCINCSDKPCLGVCPIDAVYQDENTKLIKLDEHCFGCVLCSNACPYDAIH 73



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEP 61
           VV ENCI C    C++VCP      +G N + I  D  C+ CG+C   C  +AIK     
Sbjct: 343 VVEENCISCGL--CMDVCPTKSISLDGPNPIKIDTDNSCVYCGLCAEACNFEAIK----L 396

Query: 62  GLELWLKINSEYATQWPNITTKK 84
             E +   N E      ++  ++
Sbjct: 397 AEEFFTNRNHEIFFIKRDLRGRR 419



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC+   C++ CPVD     ++ + ++ DECI C  CE  CPV+A
Sbjct: 429 ACQLCEV--CIKNCPVDAMSVEDDMITVNHDECISCRNCEGICPVNA 473



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  C     +     GE     I  ++CI CG C   CP DAIK 
Sbjct: 94  CRACG--ACVNACKSGAIHLKSTGGEEMHSEIDENKCIRCGYCFRACPTDAIKY 145



 Score = 42.8 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPV-DAI 55
           CI C +  C   CP D    GE           L I  D+CI C  C   CP   AI
Sbjct: 128 CIRCGY--CFRACPTDAIKYGEILPKTVKEGKTLCIDHDQCIGCMTCTRICPSKGAI 182



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPG 62
           + CI C    C  +CP       G       I P  C  C  C   CP  AI   + E  
Sbjct: 164 DQCIGC--MTCTRICPSKGAINVGKTNKLPFIDPAYCARCEECMHACPTYAIDYVEREEA 221

Query: 63  LELWLKI 69
            E + KI
Sbjct: 222 FESFNKI 228


>gi|258514656|ref|YP_003190878.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778361|gb|ACV62255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 936

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C  VCP        N + I P +C  CG+C  ECP  AI+
Sbjct: 869 CAACL--TCTRVCPYGIPRVINNKVFIDPVQCKGCGICTVECPHKAIE 914


>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
 gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C  T C   CPV+      +N   I P +CI CG C   C  +AI
Sbjct: 578 DKCKGC--TLCARNCPVNAITGTVKNPHKIDPAKCIKCGACMERCKFNAI 625



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I  D+C  C +C   CPV+AI
Sbjct: 572 QYEILEDKCKGCTLCARNCPVNAI 595


>gi|224582936|ref|YP_002636734.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224467463|gb|ACN45293.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDD 213


>gi|167757520|ref|ZP_02429647.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402]
 gi|167702517|gb|EDS17096.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402]
          Length = 371

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C    C+++C  +     ++  +I  D+C+ CG C   CP DAI    +  
Sbjct: 197 DKCIGCGQ--CIKICAHNGTSITDHKASIDHDKCVGCGRCIGVCPKDAIVASMDEA 250


>gi|164688745|ref|ZP_02212773.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM
          16795]
 gi|164602221|gb|EDQ95686.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM
          16795]
          Length = 573

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          C  C    CV VCPVD          I  D CI CG C   CP
Sbjct: 10 CRGC--YACVRVCPVDAIVIKGGQADILMDRCILCGRCSKACP 50


>gi|161505794|ref|YP_001572906.1| hypothetical protein SARI_03970 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867141|gb|ABX23764.1| hypothetical protein SARI_03970 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 157

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV   +     + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIHRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|119776308|ref|YP_929048.1| polysulfide reductase subunit B [Shewanella amazonensis SB2B]
 gi|119768808|gb|ABM01379.1| polysulfide reductase, subunit B [Shewanella amazonensis SB2B]
          Length = 188

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP    Y G++ +  I  ++C+ C  C   CP 
Sbjct: 59  SCQQCEDAPCVKVCPTGAAYVGDDGIVSIKAEKCVGCMYCVAACPY 104


>gi|253690637|ref|YP_003019827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251757215|gb|ACT15291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 173

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D      + + +    CI C  C   CP  AI
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAI 103



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------EGENFL---AIHP-DECIDCGV---CEP 48
           V+   CI CK   CV  CP             EGE  L    +H  D C D      C  
Sbjct: 83  VIQSRCIGCK--SCVVACPFGAINVVTKASNDEGETHLTQSEVHKCDLCADVAQSPSCVS 140

Query: 49  ECPVDAIKPDTEPGLELW-LKINSEYATQWPN 79
            CP  A++  T   L    L+     A  WP+
Sbjct: 141 VCPTSALRLVTADELRKQTLEKQRRSALGWPS 172


>gi|206901606|ref|YP_002250206.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum
           H-6-12]
 gi|206740709|gb|ACI19767.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum
           H-6-12]
          Length = 390

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + C  C    C +VC  D   E E    I  D C  CG+C   CPV AI
Sbjct: 327 AYINPDLCTSCG--ICKKVCIYDAPVEKEGK-YIITDLCDGCGLCVKLCPVRAI 377


>gi|182413283|ref|YP_001818349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177840497|gb|ACB74749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 179

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPD 58
           +E C  C +  CV  CP      ++    + + P++CI C  C   CP DA  I PD
Sbjct: 55  SERCNHCDNPPCVHCCPTGASHVHDRGGVVLVTPEKCIGCKACLAACPYDARFIHPD 111


>gi|221135173|ref|ZP_03561476.1| electron transport complex protein RnfB [Glaciecola sp. HTCC2999]
          Length = 193

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            Y+    CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I     
Sbjct: 107 AYIREAECIGC--TKCIQACPVDAIIGASKQMHTVIVDECTGCDLCVAPCPVDCIDMLPV 164

Query: 58  -DTEPGLELWLKINSE 72
            +T    +  L  +++
Sbjct: 165 KETPQTWQWDLARSAD 180


>gi|90418565|ref|ZP_01226477.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338237|gb|EAS51888.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 576

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V T+ C LC    CV  CP       E+   L+     C+ CG+CE  CP   I  +  
Sbjct: 416 HVQTDGCTLC--HACVTACPTGALSASEDRPLLSFSHGACVQCGLCESTCPEQVITLEPT 473

Query: 61  PGLELW 66
                W
Sbjct: 474 LDFAAW 479



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T C++ C +         + I    C  CG C   CP  A
Sbjct: 189 TRCLDACAMQAIAPAGEHVTIDAYVCAGCGNCAAVCPTGA 228


>gi|90411830|ref|ZP_01219839.1| putative dimethyl sulfoxide reductase chain B protein
           [Photobacterium profundum 3TCK]
 gi|90327392|gb|EAS43756.1| putative dimethyl sulfoxide reductase chain B protein
           [Photobacterium profundum 3TCK]
          Length = 205

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C    CV  CP    ++ +    + ++ + C+ C  CE  CP  A + D E
Sbjct: 60  YYLSISCNHCTEPACVSGCPTGAMHKRKEDGLVVVNQETCVGCRYCEMRCPYGAPQYDAE 119


>gi|14590966|ref|NP_143041.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii OT3]
 gi|3257555|dbj|BAA30238.1| 618aa long hypothetical indolepyruvate ferredoxin oxidoreductase
           alpha subunit [Pyrococcus horikoshii OT3]
          Length = 618

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ + C  CK    +  CP   +      + I    C  CG+C   CP DAIK   E
Sbjct: 560 VIEDKCTGCKACILLSGCPALIYDPETRKVRIDELICTGCGICNQLCPFDAIKFREE 616


>gi|317487970|ref|ZP_07946553.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833273|ref|ZP_08165779.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|316912919|gb|EFV34445.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485655|gb|EGC88123.1| putative Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 206

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA-----IKPD 58
           +   C  C++  C++VCPV   Y+ +   + IH D+CI C +C   CP +A      +P+
Sbjct: 61  IPVACQHCENPACLKVCPVGATYKDDMGRVEIHYDKCIGCRICMAACPYNARVFNWSEPE 120

Query: 59  TEPGL 63
            +P  
Sbjct: 121 RDPNW 125


>gi|317488807|ref|ZP_07947340.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316912112|gb|EFV33688.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 381

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 3  YVVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y+ ++ C++ ++       C + CP    +   N L +  + C+ CG C   CPV+A+ P
Sbjct: 20 YLASDRCVVVRNRHASCAKCADACPTGSVFAANNVLELDGEGCVACGACTTVCPVEALIP 79

Query: 58 DTEPGLEL 65
                +L
Sbjct: 80 LRPLDEDL 87



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EGEN-FLAIHPDECIDCGVCEPEC 50
           T+ C  C    C   CP            EGE  FL     +C+ C +C   C
Sbjct: 290 TQACSSCN--MCTVFCPTGALRKSELVPEEGEGSFLEFSAADCVQCNLCADAC 340


>gi|299066971|emb|CBJ38166.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CMR15]
          Length = 268

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E CI C  T C++ CPVD           +  D C  C +C   CPVD I          
Sbjct: 88  ERCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDMVPVTGERT 145

Query: 62  GLELWLKINSEYAT 75
           G   W +  ++ A 
Sbjct: 146 GWNAWSQAQADEAR 159



 Score = 41.3 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I P+ CI C +C   CPVDAI
Sbjct: 85  IDPERCIGCTLCIQACPVDAI 105


>gi|290475910|ref|YP_003468805.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related
           [Xenorhabdus bovienii SS-2004]
 gi|289175238|emb|CBJ82041.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Xenorhabdus bovienii SS-2004]
          Length = 180

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|261867802|ref|YP_003255724.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413134|gb|ACX82505.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 196

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP   I
Sbjct: 106 AFIDENMCIGC--TKCIQACPVDAIIGTNKSMHTIIPDLCTGCELCVAPCPTSCI 158



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
                I  + CI C  C   CPVDAI
Sbjct: 103 PKVAFIDENMCIGCTKCIQACPVDAI 128


>gi|271498826|ref|YP_003331851.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270342381|gb|ACZ75146.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 184

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
            C  C+H  C++ CPV+ + + E+ + +H P  CI C  C   CP  A K 
Sbjct: 56  ACNHCEHPACLDACPVEAYTKREDGIVVHDPARCIGCKNCLRSCPYGAPKF 106


>gi|255659582|ref|ZP_05404991.1| F420H2-dehydrogenase, beta subunit [Mitsuokella multacida DSM
          20544]
 gi|260848141|gb|EEX68148.1| F420H2-dehydrogenase, beta subunit [Mitsuokella multacida DSM
          20544]
          Length = 398

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 8  NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEP 61
          +C  C    C   CP D        EG  +  +  D C +CG CE  CPV + I  + + 
Sbjct: 14 DCCGC--YACYNSCPFDAITMEEDAEGFRYPRVDADRCRNCGKCERNCPVLNPIVKEQDQ 71

Query: 62 GLELWLKINSEYA 74
              +  IN + A
Sbjct: 72 TPPTYAAINKDEA 84



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
          E  +A +  +C  C  C   CP DAI  + +     + +++++
Sbjct: 5  EKMIAANRADCCGCYACYNSCPFDAITMEEDAEGFRYPRVDAD 47


>gi|227113884|ref|ZP_03827540.1| electron transport protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 173

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D      + + +    CI C  C   CP  AI
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAI 103



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------EGENFL---AIHP-DECIDCGV---CEP 48
           V+   CI CK   CV  CP             EGE  L    +H  D C+D      C  
Sbjct: 83  VIQSRCIGCK--SCVVACPFGAINVVTKASNDEGEAHLTQSEVHKCDLCVDVAQSPSCVS 140

Query: 49  ECPVDAIKPDTEPGLELW-LKINSEYATQWPN 79
            CP  A++  T   L    L+     A  WP+
Sbjct: 141 VCPTSALRLVTADELRKQTLEKQRRSALGWPS 172


>gi|242280658|ref|YP_002992787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123552|gb|ACS81248.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 304

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + CI C    C+E CP    +  +  + I P +C+ CGVC  +C  DA++
Sbjct: 236 AVVDPQKCIGCGQ--CMEYCPFGAMHLRDKRMRIDPKKCMGCGVCTNKCRKDALR 288


>gi|197285565|ref|YP_002151437.1| anaerobic dimethyl sulfoxide reductase subunit B [Proteus mirabilis
           HI4320]
 gi|227356062|ref|ZP_03840453.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
 gi|194683052|emb|CAR43553.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           HI4320]
 gi|227163839|gb|EEI48747.1| anaerobic dimethyl sulfoxide reductase chain B [Proteus mirabilis
           ATCC 29906]
          Length = 205

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    +  E +  + ++ D C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVNQDVCVGCRYCELRCPYGAPQFDE 118

Query: 60  EPGL 63
           +  L
Sbjct: 119 KKKL 122


>gi|182413557|ref|YP_001818623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177840771|gb|ACB75023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 551

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
            +T  C  C    C+  CPV  + +     +  H  D+CI C  C  +CP DA K +   
Sbjct: 106 TITTACHHCADPACLNGCPVLAYEKDPLTGIVRHLDDQCIGCQYCILKCPYDAPKYNARL 165

Query: 62  G 62
           G
Sbjct: 166 G 166


>gi|171463534|ref|YP_001797647.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193072|gb|ACB44033.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 163

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIGCKL--CEAVCPAYAITIETAERDDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +T    +
Sbjct: 62 ERCIGCKLCEAVCPAYAITIETAERDD 88


>gi|167761979|ref|ZP_02434106.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC
           43183]
 gi|167700211|gb|EDS16790.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC
           43183]
          Length = 277

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V TE C  C +  CV+ CP     +G+       ++CI C  C   CP  A   DT    
Sbjct: 205 VDTELCNHCGY--CVKHCPAGAIVKGDECST-DVEKCIRCCACVKGCPQKARTFDTP--- 258

Query: 64  ELWLKINSEYATQ 76
             +  + ++   +
Sbjct: 259 --FAALLADCFKK 269



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
               A+  + C  CG C   CP  AI    E
Sbjct: 200 PRIPAVDTELCNHCGYCVKHCPAGAIVKGDE 230


>gi|108802182|ref|YP_642379.1| formate dehydrogenase beta subunit [Mycobacterium sp. MCS]
 gi|119871335|ref|YP_941287.1| formate dehydrogenase beta subunit [Mycobacterium sp. KMS]
 gi|108772601|gb|ABG11323.1| formate dehydrogenase beta subunit [Mycobacterium sp. MCS]
 gi|119697424|gb|ABL94497.1| formate dehydrogenase beta subunit [Mycobacterium sp. KMS]
          Length = 300

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 121 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIE 172


>gi|254976912|ref|ZP_05273384.1| electron transport protein [Clostridium difficile QCD-66c26]
 gi|255094298|ref|ZP_05323776.1| electron transport protein [Clostridium difficile CIP 107932]
 gi|255102480|ref|ZP_05331457.1| electron transport protein [Clostridium difficile QCD-63q42]
 gi|255308385|ref|ZP_05352556.1| electron transport protein [Clostridium difficile ATCC 43255]
 gi|255316052|ref|ZP_05357635.1| electron transport protein [Clostridium difficile QCD-76w55]
 gi|255518709|ref|ZP_05386385.1| electron transport protein [Clostridium difficile QCD-97b34]
 gi|255651831|ref|ZP_05398733.1| electron transport protein [Clostridium difficile QCD-37x79]
 gi|255657271|ref|ZP_05402680.1| electron transport protein [Clostridium difficile QCD-23m63]
 gi|260684857|ref|YP_003216142.1| electron transport protein [Clostridium difficile CD196]
 gi|260688515|ref|YP_003219649.1| electron transport protein [Clostridium difficile R20291]
 gi|296451876|ref|ZP_06893594.1| electron transporter HydN [Clostridium difficile NAP08]
 gi|296879728|ref|ZP_06903703.1| electron transporter HydN [Clostridium difficile NAP07]
 gi|306521618|ref|ZP_07407965.1| electron transport protein [Clostridium difficile QCD-32g58]
 gi|260211020|emb|CBA66338.1| electron transport protein [Clostridium difficile CD196]
 gi|260214532|emb|CBE07053.1| electron transport protein [Clostridium difficile R20291]
 gi|296259293|gb|EFH06170.1| electron transporter HydN [Clostridium difficile NAP08]
 gi|296429317|gb|EFH15189.1| electron transporter HydN [Clostridium difficile NAP07]
          Length = 171

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C + CP        N + I+ + CI C  C   CP+ AI
Sbjct: 59  CRHCEDAPCAKACPNGGIVRVGNTIKINEENCIGCKTCMLACPIGAI 105


>gi|293390124|ref|ZP_06634458.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950658|gb|EFE00777.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 196

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP   I
Sbjct: 106 AFIDENMCIGC--TKCIQACPVDAIIGTNKSMHTIIPDLCTGCELCVAPCPTSCI 158



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
                I  + CI C  C   CPVDAI
Sbjct: 103 PKVAFIDENMCIGCTKCIQACPVDAI 128


>gi|209731956|gb|ACI66847.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAE 131



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|126667558|ref|ZP_01738528.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter sp. ELB17]
 gi|126627984|gb|EAZ98611.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter sp. ELB17]
          Length = 211

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DTEPGLE 64
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I     EP + 
Sbjct: 114 DECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCIDMIVIEPDIR 171

Query: 65  LWL 67
            W+
Sbjct: 172 SWI 174



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +   + +    I  DECI C  C   CPVDAI
Sbjct: 91  VEPQPLDAEHGAAQAKRVAVIREDECIGCTKCIQACPVDAI 131


>gi|28867646|ref|NP_790265.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967810|ref|ZP_03395957.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|301382447|ref|ZP_07230865.1| ferredoxin [Pseudomonas syringae pv. tomato Max13]
 gi|302061161|ref|ZP_07252702.1| ferredoxin [Pseudomonas syringae pv. tomato K40]
 gi|302132046|ref|ZP_07258036.1| ferredoxin [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28850881|gb|AAO53960.1| ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927586|gb|EEB61134.1| ferredoxin [Pseudomonas syringae pv. tomato T1]
 gi|331014959|gb|EGH95015.1| ferredoxin [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 83

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I+P+ C +C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISQGEEIYVINPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEP 61
          I  D   
Sbjct: 59 IPLDENH 65


>gi|86152690|ref|ZP_01070895.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843575|gb|EAQ60785.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 220

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 67  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 126

Query: 61  PGL 63
            G 
Sbjct: 127 SGH 129


>gi|90422688|ref|YP_531058.1| glycyl-radical activating protein [Rhodopseudomonas palustris
           BisB18]
 gi|90104702|gb|ABD86739.1| Glycyl-radical enzyme activating [Rhodopseudomonas palustris
           BisB18]
          Length = 306

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           NC+ C    C EVCP       EN   I   +CI CG C   C   A
Sbjct: 60  NCVKCG--KCKEVCPTGAISP-ENPAFIDRSKCISCGTCANVCAYGA 103



 Score = 39.0 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 21 CPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          CP+ C         + E  L      C+ CG C+  CP  AI P+   
Sbjct: 35 CPLACRWCSNPESQKAEPSLFFQKANCVKCGKCKEVCPTGAISPENPA 82


>gi|118581974|ref|YP_903224.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118504684|gb|ABL01167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 367

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C  C    C++ C  D     +    I   +C  C  C   CPV AI+       
Sbjct: 189 VSAKACTGCGF--CLKSCAHDAIAINDGIAYIDALKCAGCSRCISVCPVRAIQVQWNEAA 246

Query: 64  ELWLKINSEYAT 75
           +L ++  +EYA 
Sbjct: 247 DLVMRKMAEYAR 258


>gi|329898086|ref|ZP_08272295.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
 gi|328920958|gb|EGG28383.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
          Length = 198

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I   + 
Sbjct: 113 AYIHEDECIGC--TKCIQACPVDAILGAAKLMHTVIASECTGCDLCVEPCPVDCIDMIEL 170

Query: 60  EPGLELW 66
              L+ W
Sbjct: 171 PTTLQNW 177


>gi|237735082|ref|ZP_04565563.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|229381858|gb|EEO31949.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 367

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C    C+++C  +     ++  +I  D+C+ CG C   CP DAI    +  
Sbjct: 193 DKCIGCGQ--CIKICAHNGTSITDHKASIDHDKCVGCGRCIGVCPKDAIVASMDEA 246


>gi|161612713|ref|YP_001586678.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi B str. SPB7]
 gi|161362077|gb|ABX65845.1| hypothetical protein SPAB_00411 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAKGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP L
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPAL 247


>gi|50120188|ref|YP_049355.1| electron transport protein HydN [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610714|emb|CAG74159.1| electron transport protein [Pectobacterium atrosepticum SCRI1043]
          Length = 181

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   C  VCP       ++F+ +    CI C  C   CP   ++  + P ++  +
Sbjct: 58  CRQCEDAPCANVCPNGAITREKDFIHVQQARCIGCKTCVVACPYGVMEVVSRPVMKKRI 116


>gi|308048358|ref|YP_003911924.1| respiratory nitrite reductase specific menaquinol--cytochrome-c
           reductase complex Fe-S cluster containing subunit NrfC
           [Ferrimonas balearica DSM 9799]
 gi|307630548|gb|ADN74850.1| respiratory nitrite reductase specific menaquinol--cytochrome-c
           reductase complex Fe-S cluster containing subunit NrfC
           [Ferrimonas balearica DSM 9799]
          Length = 219

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C+ C+   C+ VCP    +  EN +  + P +C+ C  C   CP 
Sbjct: 89  SCVHCETAACIAVCPTGACFRDENGVVDVDPYKCVGCQYCIAACPY 134


>gi|242399275|ref|YP_002994699.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265668|gb|ACS90350.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 189

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++ E C  C  T C   CP +        +  I+P++CI CG+C   C   AI+ 
Sbjct: 134 IIAEKCKGC--TLCARNCPQNAIEGAPRVVHKINPEKCIGCGICATICKFSAIEE 186



 Score = 37.4 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
          + CI CK   C+ VCP   F        + +    C+ C  C   CPV+A++
Sbjct: 44 DKCIGCKL--CMNVCPAGVFEYVPEIKKVTLWLGRCVFCQQCVDVCPVNALE 93


>gi|257791333|ref|YP_003181939.1| thiamine pyrophosphate protein domain-containing protein
           TPP-binding [Eggerthella lenta DSM 2243]
 gi|257475230|gb|ACV55550.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Eggerthella lenta DSM 2243]
          Length = 583

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT+ C  C        CP        +   I   +CI CG C   C  +AI
Sbjct: 520 AYAVTDACTACGVCS-TLGCPAIAKDPANDHALIDAAQCIGCGQCAQYCAWNAI 572


>gi|219852096|ref|YP_002466528.1| nitroreductase [Methanosphaerula palustris E1-9c]
 gi|219546355|gb|ACL16805.1| nitroreductase [Methanosphaerula palustris E1-9c]
          Length = 295

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +V  E C  C    C EVC       G N   I    CI CG C   CPV A
Sbjct: 28 HVDNEKCTRCG--SCTEVC-RGVLGMGNNGPEIVSPSCIRCGQCVAVCPVGA 76


>gi|212711766|ref|ZP_03319894.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
 gi|212685288|gb|EEB44816.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
          Length = 200

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + CI C  C   CPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|212223876|ref|YP_002307112.1| putative ATPase RIL [Thermococcus onnurineus NA1]
 gi|212008833|gb|ACJ16215.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 591

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 66

Query: 56 K-----PDTEPGLELWLKINSEYATQWPNI 80
                 + E G      +N+    + P +
Sbjct: 67 TIINLPEELEEGCVHRYGVNAFVLYRLPVV 96


>gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
 gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
          Length = 599

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+ E  C  C    C + CPV   +   G+    I  ++CI CG C   C  + I+
Sbjct: 543 YVIDEEKCRKCGL--CAKQCPVGAIHGELGKVPYVIDQEKCIKCGQCIKACHFNVIE 597



 Score = 42.1 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CP     E      I  ++C  CG+C  +CPV AI  + 
Sbjct: 532 CPAGVCKE-LLQYVIDEEKCRKCGLCAKQCPVGAIHGEL 569


>gi|124382860|ref|YP_001025159.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10229]
 gi|126446057|ref|YP_001079510.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10247]
 gi|126238911|gb|ABO02023.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10247]
 gi|261827011|gb|ABM99646.2| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10229]
          Length = 265

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   EN L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREENGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|309388392|gb|ADO76272.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
          praevalens DSM 2228]
 gi|309389792|gb|ADO77672.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
          praevalens DSM 2228]
          Length = 418

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + C+ C    CV  CP D      +   +  ++C  CG+C  +C  DA++ D E   E 
Sbjct: 7  DKCVGCGV--CVTSCPFDALKMENDIAVVDTEKCTMCGICVKKCNFDAMEIDKEETGEK 63



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           L I  D+C+ CGVC   CP DA+K + +
Sbjct: 1  MLNIFEDKCVGCGVCVTSCPFDALKMEND 29


>gi|297619557|ref|YP_003707662.1| NIL domain-containing protein [Methanococcus voltae A3]
 gi|297378534|gb|ADI36689.1| NIL domain protein [Methanococcus voltae A3]
          Length = 132

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E CI C    C+  CPV      E+F      DECI C  C   CP  AI
Sbjct: 80  EKCIDCG--ACIVHCPVGAIKFEEDFSVAFDIDECIGCKTCAKICPTKAI 127



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           ++CIDCG C   CPV AIK + +
Sbjct: 80  EKCIDCGACIVHCPVGAIKFEED 102


>gi|256827540|ref|YP_003151499.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256583683|gb|ACU94817.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 299

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAI-HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C+ C    CV VCP    Y   +   L I   D+CI C  C   CP D  +      + 
Sbjct: 80  SCMHCTDAACVNVCPSGSLYHDPDGTGLVIYDVDKCIGCQYCRSACPFDVPRHTGIGVVG 139

Query: 65  LWLKIN 70
             +KIN
Sbjct: 140 GGIKIN 145


>gi|261345710|ref|ZP_05973354.1| cytochrome c nitrite reductase, Fe-S protein [Providencia
           rustigianii DSM 4541]
 gi|282566197|gb|EFB71732.1| cytochrome c nitrite reductase, Fe-S protein [Providencia
           rustigianii DSM 4541]
          Length = 223

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+H  CV+VCP       +    + ++PD C+ C  C   CP 
Sbjct: 91  SCQHCEHAPCVDVCPTGASFIDKATGIVDVNPDLCVGCQYCIAACPY 137


>gi|218130960|ref|ZP_03459764.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697]
 gi|317476271|ref|ZP_07935521.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986832|gb|EEC53164.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697]
 gi|316907545|gb|EFV29249.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 286

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP   I     P  + 
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQGTIIALNFPPRKP 275

Query: 66  WLK 68
             +
Sbjct: 276 KTE 278



 Score = 41.7 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVTACQFDAIHMNPETGLPEVDESKCTACGACAKACPRNIIE 189


>gi|39996541|ref|NP_952492.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|39983422|gb|AAR34815.1| ferredoxin family protein [Geobacter sulfurreducens PCA]
 gi|298505557|gb|ADI84280.1| ferredoxin family protein [Geobacter sulfurreducens KN400]
          Length = 94

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + E C+ C    CVEVCP   F  EG     +  D+C++CG C   CP  AI+ D
Sbjct: 15 FIGEKCVGCG--MCVEVCPHQVFRLEGSKAEVVARDDCMECGACAVNCPASAIRVD 68


>gi|317490471|ref|ZP_07948952.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325831351|ref|ZP_08164605.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
 gi|316910409|gb|EFV32037.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325486605|gb|EGC89053.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
          Length = 583

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y VT+ C  C        CP        +   I   +CI CG C   C  +AI
Sbjct: 520 AYAVTDACTACGVCS-TLGCPAIAKDPANDHALIDAAQCIGCGQCAQYCAWNAI 572


>gi|126729406|ref|ZP_01745220.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37]
 gi|126710396|gb|EBA09448.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37]
          Length = 395

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-------KPDT 59
          E CI C    C   CP++     ++ + + PD+C  C  C P CP  +I       +P +
Sbjct: 14 EICIRC--YTCEMTCPIEAITHNDDNVVVDPDKCNFCMDCIPVCPTGSIDEWRVVREPYS 71

Query: 60 EPGLELWLKI 69
                W+++
Sbjct: 72 LDAQFGWVEL 81



 Score = 40.9 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP++AI  + +
Sbjct: 11 IDPEICIRCYTCEMTCPIEAITHNDD 36


>gi|126438164|ref|YP_001073855.1| formate dehydrogenase beta subunit [Mycobacterium sp. JLS]
 gi|126237964|gb|ABO01365.1| formate dehydrogenase beta subunit [Mycobacterium sp. JLS]
          Length = 300

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 121 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIE 172


>gi|58581545|ref|YP_200561.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426139|gb|AAW75176.1| ferredoxin II [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 156

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C+  CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 98  AWIVEADCIGC--TKCIHACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 151


>gi|130071|sp|P13629|PHFL_DESVO RecName: Full=Periplasmic [Fe] hydrogenase large subunit;
          AltName: Full=Fe hydrogenlyase
 gi|145099|gb|AAA23373.1| [Fe]-hydrogenase alpha subunit [Desulfovibrio vulgaris]
          Length = 421

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 9  CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CI C    C + CP    +   G+     H + CI+CG C   CPV AI  
Sbjct: 35 CIGCD--SCQQYCPTGAIFGDTGDAHKIPHEELCINCGQCLTHCPVGAIYE 83



 Score = 40.5 bits (94), Expect = 0.079,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          F+ I   +CI C  C+  CP  AI  DT
Sbjct: 27 FIQIDESKCIGCDSCQQYCPTGAIFGDT 54


>gi|303245127|ref|ZP_07331443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484510|gb|EFL47458.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 386

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV +NC+ C    CV  CPV+     +N   I   +CI C +C   CP +AI
Sbjct: 127 VVMDNCVGCGV--CVPECPVEAITIEDNKAVIDKTKCIYCSICGQTCPWNAI 176



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDE-------CIDCGVCEPECPVDAIK 56
           C+LC    CV+VCP++        E        PDE       C+ CGVC PECPV+AI 
Sbjct: 91  CVLC--QKCVDVCPIEIISIPGLVEKPKKQITIPDEPIVVMDNCVGCGVCVPECPVEAIT 148

Query: 57  PDTE 60
            +  
Sbjct: 149 IEDN 152



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          C LC    CVEVCP     E +  +  +P +C+ CG C   CP 
Sbjct: 34 CTLCMQ--CVEVCPTGALSEIDGKIDYNPVKCMKCGKCAEACPT 75



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI C    C E+CP +    +  N + + P  C  CG+C   CPV+A+  D +
Sbjct: 199 ACIGC--FKCAEICPGNMIKVDKNNLIVMPPKACPACGLCVNVCPVNALTLDVK 250



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI+C    C   CP      G         N +  +P  C  CG C   CP+  ++ D  
Sbjct: 296 CIVCG--ACTVACPTGALKMGTINHNGKDYNRIEFNPSLCDKCGKCVEVCPMKVLEIDEN 353

Query: 61  PGL 63
              
Sbjct: 354 DEH 356



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +C EVCP       E    +    CI CG C   CP  A+K
Sbjct: 273 KECAEVCPTRAIKVDEKSKTV--KMCIVCGACTVACPTGALK 312


>gi|269217312|ref|ZP_06161166.1| iron-sulfur cluster-binding protein [Slackia exigua ATCC 700122]
 gi|269129449|gb|EEZ60534.1| iron-sulfur cluster-binding protein [Slackia exigua ATCC 700122]
          Length = 259

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           E+C  CK   C+  CPV   Y         +  D CI CG+C   CP +  + D
Sbjct: 155 EHCKQCKEAACMRNCPVHAIYADPKTGARVVDTDACIGCGLCHEACPWNMPQID 208



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 14/61 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCGVCEPECPVDAIKPD 58
           V T+ CI C    C E CP        N   I P      +CI CG C  +CP  AIK  
Sbjct: 185 VDTDACIGCGL--CHEACPW-------NMPQIDPASGKSTKCIACGRCAVQCPNGAIKFV 235

Query: 59  T 59
            
Sbjct: 236 D 236


>gi|253582041|ref|ZP_04859265.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836390|gb|EES64927.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 365

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V TE CI C    C  VC        E    I+ ++C  CGVC  +CP  A
Sbjct: 312 VTTEKCIGC--RVCKTVCGYKAIEIIEKKAVINKEKCFGCGVCVSKCPTKA 360


>gi|237802343|ref|ZP_04590804.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257482983|ref|ZP_05637024.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289624663|ref|ZP_06457617.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289648503|ref|ZP_06479846.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298485253|ref|ZP_07003346.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160241|gb|EFI01269.1| Ferredoxin [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330871125|gb|EGH05834.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. aesculi str.
          0893_23]
 gi|330874686|gb|EGH08835.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
 gi|330891346|gb|EGH24007.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. mori str. 301020]
 gi|330965063|gb|EGH65323.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. actinidiae str.
          M302091]
 gi|330985917|gb|EGH84020.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. lachrymans str.
          M301315]
 gi|331011777|gb|EGH91833.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331025200|gb|EGI05256.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 83

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I+P+ C +C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISQGEEIYVINPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEP 61
          I  D   
Sbjct: 59 IPLDENH 65


>gi|218779665|ref|YP_002430983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761049|gb|ACL03515.1| Periplasmic 4Fe-4S Ferredoxin protein with transmembrane domain
           [Desulfatibacillum alkenivorans AK-01]
          Length = 312

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C+   CV  C V    + EN   I    +CI C  C   CP      + +   
Sbjct: 115 CMHCQDPACVSACIVGALTKQENGAVIYDKSKCIGCRYCMVACPFGIPAYEYDQPF 170


>gi|213421582|ref|ZP_03354648.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 161

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 29 SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 75


>gi|114051372|ref|NP_001040316.1| NADH dehydrogenase ubiquinone Fe-S 8 [Bombyx mori]
 gi|87248369|gb|ABD36237.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Bombyx mori]
          Length = 221

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 120 ERCIACKL--CEAICPAQAITIEAEERKDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 176



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 120 ERCIACKLCEAICPAQAITIEAEE 143



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 161 CIYCGF--CQEACPVDAIVEGPNF 182


>gi|62182754|ref|YP_219171.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130387|gb|AAX68090.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717255|gb|EFZ08826.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 208

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++ +    + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118

Query: 60  EPG 62
           +  
Sbjct: 119 QAN 121


>gi|78355312|ref|YP_386761.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217717|gb|ABB37066.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 427

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 13/65 (20%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGE-----------NFLAIHPDECIDCGVCEPE 49
           M  +  E C  C    C   CP+D                   + +    C+ CG C  +
Sbjct: 284 MAQIQEERCTGCG--KCAAACPIDAITMVPAAQTTPDTRRRRSVQVDTSLCLGCGACALK 341

Query: 50  CPVDA 54
           CP  A
Sbjct: 342 CPTGA 346



 Score = 40.9 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I  + C  CG C   CP+DAI
Sbjct: 284 MAQIQEERCTGCGKCAAACPIDAI 307


>gi|312622471|ref|YP_004024084.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202938|gb|ADQ46265.1| Fe-S cluster domain protein [Caldicellulosiruptor kronotskyensis
          2002]
          Length = 443

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 12 EKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57


>gi|303326306|ref|ZP_07356749.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864222|gb|EFL87153.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 653

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C+  CP     E    GE    +    C  CG+C   CP  AI+       +
Sbjct: 585 CVDCG--KCIRCCPFGAIKEVEIRGEQKAQVIETVCQGCGLCTATCPQGAIQLSHATDNQ 642

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 643 ILAEVNA 649



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 25/85 (29%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYE---------------GENFLAIHPDECID 42
            YV    C  C    C E CP     D F E                     I+   C  
Sbjct: 235 AYVDWSKCTGCG--ACTEKCPSKKTPDAFNEFTGPTTAITIAFPQAIPKKAVINAAHCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D +  
Sbjct: 293 FVKGKCGVCAKVCPTGAIQYDMQDE 317


>gi|170290376|ref|YP_001737192.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174456|gb|ACB07509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 191

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           V   C+ C    CV+ CP    +  +    I  P +CI C  C   CP  
Sbjct: 61  VPMRCMHCDPAPCVKACPTGSMHRTDEGFVISDPSKCIGCRTCLLACPFG 110


>gi|187251479|ref|YP_001875961.1| putative Indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
          minutum Pei191]
 gi|186971639|gb|ACC98624.1| Putative indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
          minutum Pei191]
          Length = 56

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +    CI C    C   CPV    E +    I P  CIDCG C   CPV  I
Sbjct: 1  MAHKIDGAVCINCG--ACEGTCPVSAISEQDGKRVIDPAVCIDCGACVSSCPVSCI 54


>gi|148653804|ref|YP_001280897.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Psychrobacter sp. PRwf-1]
 gi|148572888|gb|ABQ94947.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Psychrobacter sp. PRwf-1]
          Length = 83

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C  VCP D  YEGE    I+PD C +C        C   CP+D 
Sbjct: 1  MALMITDECINCDV--CEPVCPNDAIYEGEEIYEINPDLCTECVGHFDEPQCVEICPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPND 62



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEP CP DAI    E
Sbjct: 7  DECINCDVCEPVCPNDAIYEGEE 29


>gi|169769016|ref|XP_001818978.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|83766836|dbj|BAE56976.1| unnamed protein product [Aspergillus oryzae]
          Length = 226

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 182

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 183 ETA----------NAEYATETREELLYNKEKLLANGDKWE 212


>gi|307825404|ref|ZP_07655623.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
 gi|307733579|gb|EFO04437.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
          Length = 192

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +++ E+CI C    C+  CPVD        +  +   EC  C +C   CPVD I     
Sbjct: 82  AFIIEEDCIGC--VKCIADCPVDAIVGAAKLMHTVIASECTGCELCIAPCPVDCIIMQAA 139

Query: 61  PG 62
           P 
Sbjct: 140 PP 141


>gi|308047958|ref|YP_003911524.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307630148|gb|ADN74450.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 225

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y  +  C  C    CV+ CP    +  E +  + +    CI C  C   CP DA + D
Sbjct: 78  AYYASLGCNHCSEPVCVKTCPTGAMHKREQDGLVLVDESLCIGCQSCAQACPYDAPQID 136


>gi|284049221|ref|YP_003399560.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953442|gb|ADB48245.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 418

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C   K  DCV+VC  D  +   + + I PD+C+ C  C   C ++++K
Sbjct: 59  CSEDKQADCVKVCQWDAMHPSADGVQIDPDKCVGCQACVDACKLESLK 106


>gi|227832792|ref|YP_002834499.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182719|ref|ZP_06042140.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453808|gb|ACP32561.1| formate dehydrogenase, iron-sulfur subunit [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 347

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   + G
Sbjct: 117 SDVCKHCTNAGCLDVCPTGALFRSEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGG 174


>gi|238501446|ref|XP_002381957.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|220692194|gb|EED48541.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 226

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 182

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 183 ETA----------NAEYATETREELLYNKEKLLANGDKWE 212


>gi|222529283|ref|YP_002573165.1| fe-S cluster domain-containing protein [Caldicellulosiruptor
          bescii DSM 6725]
 gi|222456130|gb|ACM60392.1| Fe-S cluster domain protein [Caldicellulosiruptor bescii DSM
          6725]
          Length = 443

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 12 EKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57


>gi|150402527|ref|YP_001329821.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033557|gb|ABR65670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 132

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    CV  CPV        F + +  +ECI C  C   CPV+AIK
Sbjct: 80  EKCIDCG--ACVVHCPVGALSVDNEFKILLDEEECIGCKNCAKICPVNAIK 128



 Score = 40.9 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              +    ++CIDCG C   CPV A+  D E
Sbjct: 72  PKMIQKDDEKCIDCGACVVHCPVGALSVDNE 102


>gi|15611332|ref|NP_222983.1| ferredoxin [Helicobacter pylori J99]
 gi|4154783|gb|AAD05841.1| Ferredoxin [Helicobacter pylori J99]
 gi|307636971|gb|ADN79421.1| 4Fe-4S ferredoxin [Helicobacter pylori 908]
 gi|317013722|gb|ADU81158.1| ferredoxin [Helicobacter pylori Gambia94/24]
 gi|325995562|gb|ADZ50967.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Helicobacter
          pylori 2018]
 gi|325997158|gb|ADZ49366.1| 4Fe-4S ferredoxin/ iron-sulfur binding protein [Helicobacter
          pylori 2017]
          Length = 84

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECPVD 53
          M+ +V + CI C    C E CP +   EG+   +I PD C +C         C   CPVD
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYSIDPDRCTECYGYDDDEPRCVSVCPVD 58

Query: 54 AIKPD 58
          AI PD
Sbjct: 59 AILPD 63



 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|303256134|ref|ZP_07342151.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302861104|gb|EFL84178.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 192

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C    CV+ CP    Y  EN L    P++C+ C  C   CP DA
Sbjct: 67  CQHCSDAPCVKTCPFGANYYDENGLVRNDPNKCVGCNYCVASCPYDA 113


>gi|212211971|ref|YP_002302907.1| electron transport complex protein [Coxiella burnetii CbuG_Q212]
 gi|212010381|gb|ACJ17762.1| electron transport complex protein [Coxiella burnetii CbuG_Q212]
          Length = 206

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  + CI C  T C++ CP D        +  +  D C  C +C P CPVD I     
Sbjct: 81  AFVREDECIGC--TKCIQACPTDAIIGASKLMHTVITDACTGCELCLPPCPVDCIDMKII 138

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L    K   + A QW +   KK
Sbjct: 139 APLTPHEK--KQKAQQWRSRYEKK 160



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C+   C+  CPVDC 
Sbjct: 110 MHTVITDACTGCEL--CLPPCPVDCI 133


>gi|212224064|ref|YP_002307300.1| ATPase, N-terminus [Thermococcus onnurineus NA1]
 gi|212009021|gb|ACJ16403.1| ATPase, N-terminus [Thermococcus onnurineus NA1]
          Length = 295

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
            ++ TE+CI C    C E CP DC    +    +    C  C VC   CPV
Sbjct: 64  AHINTESCIRCG--ICQERCPYDCIKVIDGDYVVSELTCEGCNVCSLVCPV 112



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G     I+ + CI CG+C+  CP D IK
Sbjct: 60 GAKVAHINTESCIRCGICQERCPYDCIK 87


>gi|189346683|ref|YP_001943212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          limicola DSM 245]
 gi|189340830|gb|ACD90233.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          limicola DSM 245]
          Length = 62

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +TE C  C    C   CPV    +G++   I    CIDC        C   CPVD 
Sbjct: 1  MAHRITEECTYCG--ACEPECPVAAITQGDDIYIIDESVCIDCIGYHDEAACVAVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|150402896|ref|YP_001330190.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033926|gb|ABR66039.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 658

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E     G                  I  D CIDCG
Sbjct: 240 YVDEDTCTGCG--ACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKDHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN 70
           +C   C  +A++ D +P     LKIN
Sbjct: 298 LCAKVCCAEAVRYDQKPQE---LKIN 320



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPD--ECIDCGVCEPECPVDA 54
             V  E C  CK   C  +CP +     E +  L    D   C  CG C   CP  A
Sbjct: 577 ATVNEEVCGGCKV--CALMCPYNAITYEEKDGHLVAISDDVACKGCGACAAACPSGA 631


>gi|149926432|ref|ZP_01914693.1| putative iron-sulfur binding protein [Limnobacter sp. MED105]
 gi|149824795|gb|EDM84009.1| putative iron-sulfur binding protein [Limnobacter sp. MED105]
          Length = 704

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C++ C           + ++P  C+ CG C   CP  AI+    P 
Sbjct: 330 SCIDACSTKAIKSAGEKIEVNPHLCLGCGACTTVCPTGAIQFALSPA 376



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           V  + C LC    C   CP     +      L      C+ CG+C   CP +A
Sbjct: 569 VNKDKCTLC--MSCTSACPASALIDNPEMPQLRFIERNCVQCGLCVETCPENA 619



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           E C  C    CV+ CP       +  L I  + C   G C   C
Sbjct: 202 EMCTRCG--ACVDACPTQSIS--KESLTIDLNSCDQSGACIKAC 241



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           ++ D+C  C  C   CP  A+  + E     +++ N
Sbjct: 569 VNKDKCTLCMSCTSACPASALIDNPEMPQLRFIERN 604



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDT 59
           +  + C  CG C   CP  +I  ++
Sbjct: 199 VDMEMCTRCGACVDACPTQSISKES 223


>gi|149191081|ref|ZP_01869341.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           shilonii AK1]
 gi|148835109|gb|EDL52086.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           shilonii AK1]
          Length = 228

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           ++C  C++  CV VCP    Y+ E    I  H ++C+ CG C   CP  
Sbjct: 97  DSCQHCENPPCVYVCPTGAAYKDEETGIIDVHNEKCVGCGYCLAACPYQ 145


>gi|149191926|ref|ZP_01870158.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
 gi|148834231|gb|EDL51236.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
          Length = 553

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDA 54
           T+ C LC    CV VCP    +   +  A+     +CI CG+CE  CP  A
Sbjct: 417 TDKCTLC--MACVAVCPTKALHNDGDRPALDFIEQDCIQCGMCEKACPESA 465



 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENFL----AIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG + +     I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGNDKIGHKIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                T    + +++
Sbjct: 233 HYALPTPQETQKFIE 247



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           D+C  C  C   CP  A+  D +     +++
Sbjct: 418 DKCTLCMACVAVCPTKALHNDGDRPALDFIE 448



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  ++ D C         C  C   CP  A+  +    +   ++IN
Sbjct: 166 PKFFRLNTDLCAHSSRGVKGCERCVDACPAGALSSEGNDKIGHKIEIN 213


>gi|332980968|ref|YP_004462409.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mahella australiensis 50-1 BON]
 gi|332698646|gb|AEE95587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mahella
          australiensis 50-1 BON]
          Length = 56

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M Y +T++CI C    C   C       G++   + P  C +CG C   CPVDA
Sbjct: 1  MPYRITDDCISCG--ACEPDCEGGAISAGDDIYVVDPALCTECGNCADVCPVDA 52


>gi|293603975|ref|ZP_06686388.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817579|gb|EFF76647.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter
           piechaudii ATCC 43553]
          Length = 214

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C++ CPVD        +  +  D C  C +C   CPVD I+    P    W 
Sbjct: 86  CIGC--TLCIQACPVDAIVGANKHMHTVLADWCTGCDLCVAPCPVDCIQ--MVPAGRSWT 141

Query: 68  KINSEYATQ 76
           + ++  + Q
Sbjct: 142 EQDAAISRQ 150



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 81  IDESHCIGCTLCIQACPVDAI 101


>gi|294637678|ref|ZP_06715956.1| cytochrome c nitrite reductase, Fe-S protein [Edwardsiella tarda
           ATCC 23685]
 gi|291089154|gb|EFE21715.1| cytochrome c nitrite reductase, Fe-S protein [Edwardsiella tarda
           ATCC 23685]
          Length = 223

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CVEVCP    F +  + +  + PD C+ C  C   CP 
Sbjct: 91  SCQHCDSPPCVEVCPTGASFRDATSGIVDVDPDLCVGCQYCIAACPY 137


>gi|159905698|ref|YP_001549360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887191|gb|ABX02128.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 132

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    CV  CPV     + E  + +  +ECI C  C   CPV+AIK
Sbjct: 80  EKCIDCG--ACVVHCPVGALSVDSEFKILLDEEECIGCKNCAKICPVNAIK 128



 Score = 41.7 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
              +    ++CIDCG C   CPV A+  D+E
Sbjct: 72  PKMIQKDDEKCIDCGACVVHCPVGALSVDSE 102


>gi|187919644|ref|YP_001888675.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia phytofirmans PsJN]
 gi|187718082|gb|ACD19305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           phytofirmans PsJN]
          Length = 251

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDFDRCIGCKYCAWACPYGARELDE 125


>gi|66047114|ref|YP_236955.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257821|gb|AAY38917.1| Electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
          Length = 291

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD            I  +EC  C +C   CPVD I+
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGAAKLMHTVII-NECTGCDLCIAPCPVDCIE 137


>gi|115445575|ref|NP_001046567.1| Os02g0282900 [Oryza sativa Japonica Group]
 gi|47848571|dbj|BAD22422.1| putative 68 kDa protein HP68 [Oryza sativa Japonica Group]
 gi|113536098|dbj|BAF08481.1| Os02g0282900 [Oryza sativa Japonica Group]
 gi|125581670|gb|EAZ22601.1| hypothetical protein OsJ_06269 [Oryza sativa Japonica Group]
 gi|215768320|dbj|BAH00549.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 608

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 4  VVTEN-CI--LCKHTDCVEVCPVD-----CFYEGENFLA--IHPDECIDCGVCEPECPVD 53
          VVTE+ C    C    C + CPV+     C     +     I  + CI CG+C   CP D
Sbjct: 14 VVTEDRCRPSKCGQQ-CRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCPFD 72

Query: 54 AIK 56
          AI+
Sbjct: 73 AIQ 75


>gi|46126979|ref|XP_388043.1| NUIM_NEUCR NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (Complex I-23KD) (CI-23KD)
           [Gibberella zeae PH-1]
          Length = 213

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGEN---------FLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 112 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTKYDIDMTKCIYCGFCQESCPVDAIV 169

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 170 ESP----------NAEYATE 179


>gi|323456536|gb|EGB12403.1| hypothetical protein AURANDRAFT_52238 [Aureococcus anophagefferens]
          Length = 214

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 113 ERCIACKL--CEAVCPAQAITIEAEARADGSRKTTRYDIDMTKCIYCGYCQEACPVDAI 169



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 113 ERCIACKLCEAVCPAQAITIEAEARAD 139



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C +  C E CPVD   EG N+
Sbjct: 154 CIYCGY--CQEACPVDAIVEGPNY 175


>gi|322806473|emb|CBZ04042.1| mind superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum H04402 065]
          Length = 281

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C  T+C  VC  D          I P  C  CG C   CP +AIK + E   + +
Sbjct: 65  DICIKC--TECELVCKFDAI----ENFKIDPFLCEGCGACTLICPQNAIKLEDEKTAKTF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 37.1 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G    +I  D CI C  CE  C  DAI+
Sbjct: 56 GGKKASIDEDICIKCTECELVCKFDAIE 83


>gi|242064838|ref|XP_002453708.1| hypothetical protein SORBIDRAFT_04g011050 [Sorghum bicolor]
 gi|241933539|gb|EES06684.1| hypothetical protein SORBIDRAFT_04g011050 [Sorghum bicolor]
          Length = 597

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 2  TYVVTENCI--LCKHTDCVEVCPVD-----CFYEGENFLA--IHPDECIDCGVCEPECPV 52
            VV + C    C   +C   CPV+     C    ++     I  D C+ CG+C   CP 
Sbjct: 9  AVVVEDRCRPSKCG-QECRRRCPVNATGRQCIEVTQSSKVSLISEDLCVGCGICVKVCPF 67

Query: 53 DAIK 56
          +AI+
Sbjct: 68 NAIQ 71


>gi|257791615|ref|YP_003182221.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257475512|gb|ACV55832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 206

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
           +   C  C++  C++VCPV   Y+ +   + IH D+CI C +C   CP +A
Sbjct: 61  IPVACQHCENPACLKVCPVGATYKDDMGRVEIHYDKCIGCRICMAACPYNA 111


>gi|268589748|ref|ZP_06123969.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291314901|gb|EFE55354.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 204

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +Y ++ +C  C +  CV  CP    ++ E + L +    C+ C  CE  CP  A + D +
Sbjct: 59  SYYLSISCNHCSNPTCVAGCPTGAMHKREQDGLVVDQTICVGCRYCELRCPYGAPQYDEK 118

Query: 61  PGL 63
             L
Sbjct: 119 KKL 121


>gi|157377115|ref|YP_001475715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319489|gb|ABV38587.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 238

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   CV VCP    +  E +  + +    CI C  C   CP  
Sbjct: 95  CNNCETPSCVSVCPTGATFKREEDGIVVVDSTLCIGCNYCIQACPYG 141


>gi|145591762|ref|YP_001153764.1| putative ATPase RIL [Pyrobaculum arsenaticum DSM 13514]
 gi|145283530|gb|ABP51112.1| ABC transporter related [Pyrobaculum arsenaticum DSM 13514]
          Length = 590

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 2  TYVVTENCI--LCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVD 53
            V  ++C    C H +CV+ CPV+         E      I    CI CG+C  +CP +
Sbjct: 5  AVVDVDSCQPKKCGH-ECVKYCPVNKTGKVVWIDEQTKKAVISEALCIGCGICVHKCPFE 63

Query: 54 AIKPDTEPGL 63
          AI     P  
Sbjct: 64 AITIVNLPDE 73


>gi|27380020|ref|NP_771549.1| NADH dehydrogenase subunit I [Bradyrhizobium japonicum USDA 110]
 gi|81736780|sp|Q89KJ6|NUOI_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|27353174|dbj|BAC50174.1| NADH ubiquinone oxidoreductase chain I [Bradyrhizobium japonicum
           USDA 110]
          Length = 168

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 123



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          P+   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 47 PISPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIEAGP 89



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 108 CIYCGL--CQEACPVDAIVEGPNF 129


>gi|330999804|ref|ZP_08323509.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|329573807|gb|EGG55396.1| 4Fe-4S binding domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 183

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
            C+ C +  C+ VCP   F +  + + +   ++C  CG+C+  CP DAI
Sbjct: 61  ACMHCSNPTCLAVCPAAAFTKRPDGIVVLDRNKCTSCGLCKEACPYDAI 109


>gi|238028672|ref|YP_002912903.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
          [Burkholderia glumae BGR1]
 gi|237877866|gb|ACR30199.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia glumae BGR1]
          Length = 89

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G +   I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPDIYVIDPGKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHAETH 69


>gi|222444427|ref|ZP_03606942.1| hypothetical protein METSMIALI_00038 [Methanobrevibacter smithii
           DSM 2375]
 gi|261351023|ref|ZP_05976440.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|222433992|gb|EEE41157.1| hypothetical protein METSMIALI_00038 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860363|gb|EFC92661.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 456

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ C  C    CV+ C            GE +  I+PD C+ CG C   CP DAIK 
Sbjct: 95  TKLCKSCG--ACVQACKTGSIKIHAVDTGEAYSVINPDTCVRCGYCFRVCPTDAIKY 149



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    C+E CP++  Y   N         C  C +C   CP DAI  D +
Sbjct: 29 CANCTDKPCLESCPIEAIYVDPNDGFTKIKSTCFGCVLCRNACPYDAIHMDVD 81



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +E C  C    CV+ CP D      + +  + + CI C  CE  CPV AIK
Sbjct: 403 SEKCQSCG--ICVKNCPTDALILEGDKVTFNEENCIYCRQCEAICPVTAIK 451



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C   +C+  CP      +    + I  ++C+ CG C  +C   AI+   +
Sbjct: 325 CIACG--ECLNSCPTGAISLDAPKPIVIDENKCVYCGRCVGDCQFGAIRAYDD 375



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECP-VDAI 55
           + C+ C +  C  VCP D            +G   + ++ D CI C  C   CP   AI
Sbjct: 130 DTCVRCGY--CFRVCPTDAIKYGQLLPKTVKGGKVIIVNQDVCIGCMTCTRVCPAAGAI 186



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +   C  C    C   CP D  +          EN   I+   C  CG C   C   +IK
Sbjct: 57  IKSTCFGC--VLCRNACPYDAIHMDVDIAEPIKENVPNINTKLCKSCGACVQACKTGSIK 114

Query: 57  PDTEPGLELWLKIN 70
                  E +  IN
Sbjct: 115 IHAVDTGEAYSVIN 128



 Score = 40.1 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           V  + CI C    C  VCP        +      I+P  C  C  C   CP  AIK  + 
Sbjct: 165 VNQDVCIGC--MTCTRVCPAAGAINVSKTNKLPYINPGYCARCEECMHSCPSTAIKYSSR 222

Query: 60  EPGLELWLKI 69
           +   +L+ +I
Sbjct: 223 KKAFKLYSEI 232


>gi|209735168|gb|ACI68453.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAE 131



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|168179907|ref|ZP_02614571.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916]
 gi|226949492|ref|YP_002804583.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669235|gb|EDT81211.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916]
 gi|226844018|gb|ACO86684.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 281

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C  T+C  VC  D          I P  C  CG C   CP +AIK + E   + +
Sbjct: 65  DICIKC--TECELVCKFDAI----ENFKIDPFLCEGCGACTLICPQNAIKLEDEKTAKTF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G    +I  D CI C  CE  C  DAI+
Sbjct: 56 GGKKASIDEDICIKCTECELVCKFDAIE 83


>gi|56552709|ref|YP_163548.1| RnfABCDGE type eelectron transport complex subunit B [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241762603|ref|ZP_04760676.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260753651|ref|YP_003226544.1| electron transport complex, RnfABCDGE type subunit beta [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56544283|gb|AAV90437.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241372798|gb|EER62502.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258553014|gb|ACV75960.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 220

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C+  C  D        +  I PD C  C  CE  CP  AI+
Sbjct: 108 DLCIGC--TACIRDCSSDAIIGAARQVHTIIPDVCHGCSKCETACPTGAIE 156



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
           G     IH D CI C  C  +C  DAI
Sbjct: 99  GPKTALIHEDLCIGCTACIRDCSSDAI 125


>gi|15896720|ref|NP_350069.1| nitroreductase family protein [Clostridium acetobutylicum ATCC
          824]
 gi|15026573|gb|AAK81409.1|AE007845_10 Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum ATCC 824]
 gi|325510888|gb|ADZ22524.1| Nitroreductase family protein fused to ferredoxin domain
          [Clostridium acetobutylicum EA 2018]
          Length = 269

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          + C+ C    CV  CP       EN    + P +CI CG C   CP +AI
Sbjct: 9  DKCVKCG--ICVNECPEQIIKMKENSPEDVCPQKCIACGHCVAVCPKEAI 56



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIK 56
          N + ++ D+C+ CG+C  ECP   IK
Sbjct: 2  NLITVNHDKCVKCGICVNECPEQIIK 27


>gi|116178838|ref|XP_001219268.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum
           CBS 148.51]
 gi|88184344|gb|EAQ91812.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum
           CBS 148.51]
          Length = 223

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 122 ERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 179

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 180 ESP----------NAEYATE 189



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 103 PISPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERAD 148


>gi|284434569|gb|ADB85312.1| putative NADH-ubiquinone [Phyllostachys edulis]
          Length = 221

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 120 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 176



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 120 ERCIACKLCEAICPAQAITIEAEERED 146



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 161 CIYCGF--CQEACPVDAIVEGPNF 182


>gi|262373368|ref|ZP_06066647.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii
           SH205]
 gi|262313393|gb|EEY94478.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii
           SH205]
          Length = 180

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 MTPDFELAEYV 126


>gi|237735737|ref|ZP_04566218.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381482|gb|EEO31573.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 203

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+++  CI C    C   CP  C   G     I  D C+ CG+C   CPV AI+
Sbjct: 150 YLISNRCIACD--RCKRECPQQCIKSGS-KYKIMQDHCLHCGLCYENCPVRAIE 200


>gi|212528252|ref|XP_002144283.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073681|gb|EEA27768.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 225

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 124 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 181

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 182 ESP----------NAEYATETREELLYNKEKLLANGDKWE 211


>gi|148642370|ref|YP_001272883.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551387|gb|ABQ86515.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
          Length = 453

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ C  C    CV+ C            GE +  I+PD C+ CG C   CP DAIK 
Sbjct: 92  TKLCKSCG--ACVQACKTGSIKIHAVDTGEAYSVINPDTCVRCGYCFRVCPTDAIKY 146



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    C+E CP++  Y   N         C  C +C   CP DAI  D +
Sbjct: 26 CANCTDKPCLESCPIEAIYVDPNDGFTKIKSTCFGCVLCRNACPYDAIHMDVD 78



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +E C  C    CV+ CP D      + +  + + CI C  CE  CPV AIK
Sbjct: 400 SEKCQSCG--ICVKNCPTDALILEGDKVTFNEENCIYCRQCEAICPVTAIK 448



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C   +C+  CP      +    + I  ++C+ CG C  +C   AI+   +
Sbjct: 322 CIACG--ECLNSCPTGAISLDAPKPIVIDENKCVYCGRCVGDCQFGAIRAYDD 372



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECP-VDAI 55
           + C+ C +  C  VCP D            +G   + ++ D CI C  C   CP   AI
Sbjct: 127 DTCVRCGY--CFRVCPTDAIKYGQLLPKTVKGGKVIIVNQDVCIGCMTCTRVCPAAGAI 183



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +   C  C    C   CP D  +          EN   I+   C  CG C   C   +IK
Sbjct: 54  IKSTCFGC--VLCRNACPYDAIHMDVDIAEPIKENVPNINTKLCKSCGACVQACKTGSIK 111

Query: 57  PDTEPGLELWLKIN 70
                  E +  IN
Sbjct: 112 IHAVDTGEAYSVIN 125



 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT- 59
           V  + CI C    C  VCP        +      I+P  C  C  C   CP  AIK  + 
Sbjct: 162 VNQDVCIGC--MTCTRVCPAAGAINVSKTNKLPYINPGYCARCEECMHSCPSTAIKYSSR 219

Query: 60  EPGLELWLKI 69
           +   +L+ +I
Sbjct: 220 KKAFKLYSEI 229


>gi|323699800|ref|ZP_08111712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459732|gb|EGB15597.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 370

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +NC  C+   C+  C        E    +A++P++C+ CG C   C    ++ +   G++
Sbjct: 193 DNCQACE--ACLRACKTGALYIDETTGKIALNPEKCVGCGGCFVACRHGGLQVNWAVGVQ 250

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
            +L+   EYA      T  K SL     MD V  
Sbjct: 251 DFLERMMEYAKGV-LATKTKPSLHVNFVMDVVPD 283



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+PD C  C  C   C   A+  D   G    + +N E
Sbjct: 190 INPDNCQACEACLRACKTGALYIDETTGK---IALNPE 224


>gi|317487064|ref|ZP_07945872.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921746|gb|EFV43024.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 767

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 9/54 (16%)

Query: 7   ENCILCKHTD----CVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECP 51
           + C+ C        C+E CP           G       PD CI CG+C   CP
Sbjct: 701 DRCVSCGTCRDCRMCLESCPEGAISRETLAGGAYRYVSDPDRCIGCGICSGVCP 754


>gi|302889235|ref|XP_003043503.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724420|gb|EEU37790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 211

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGEN---------FLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 110 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTKYDIDMTKCIYCGFCQESCPVDAIV 167

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 168 ESP----------NAEYATE 177


>gi|257790218|ref|YP_003180824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489680|ref|ZP_07948184.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830334|ref|ZP_08163791.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474115|gb|ACV54435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911274|gb|EFV32879.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487801|gb|EGC90239.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 178

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +V   C+ C+   C  VCP    Y  ++ +  +  ++CI C  C   CP  A
Sbjct: 53  IVPTQCMHCEDAPCAAVCPTHATYITDSGVVLVDEEKCIGCKYCMAACPYGA 104


>gi|161502318|ref|YP_001569430.1| putative polyferredoxin [Salmonella enterica subsp. arizonae
          serovar 62:z4,z23:-- str. RSK2980]
 gi|160863665|gb|ABX20288.1| hypothetical protein SARI_00350 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +   +I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFLLTQGQASIDMARCIACGDCLFVCPVDAI 67



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           E C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP   
Sbjct: 191 EACRMCG--ACWRSCPENVIQFADDTLTITAARCTGCGGCAAVCPHQALRLRFDMEPAQT 248

Query: 65  LWLK 68
             + 
Sbjct: 249 RHIA 252


>gi|150401595|ref|YP_001325361.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus aeolicus Nankai-3]
 gi|150014298|gb|ABR56749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus aeolicus Nankai-3]
          Length = 151

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+ C++  C  +CPVD  Y  +    +  + CI CG+CE  CPV +I  D
Sbjct: 42 CMQCENAPCYNICPVDAIYLKDGIPLVKKERCIGCGMCEIVCPVGSIFID 91


>gi|121534160|ref|ZP_01665985.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307263|gb|EAX48180.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 272

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C    CV+VCP    ++ +  +  +  ++CI CG C   CP +
Sbjct: 75  CFHCGEAACVKVCPSGALFKTKTGIVAVDREKCIACGYCHNACPFN 120


>gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 637

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C + CPV+    E +    I   +CI CGVC   C  DAI
Sbjct: 587 EKCTGC--MACAKKCPVEAISGERKKAHEIDQAKCIKCGVCMETCKFDAI 634



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +      I  ++C  C  C  +CPV+AI  + +   E
Sbjct: 571 CPAG-VCKALIQYNIDKEKCTGCMACAKKCPVEAISGERKKAHE 613


>gi|70607818|ref|YP_256688.1| 4Fe-4S binding domain-containing protein [Sulfolobus acidocaldarius
           DSM 639]
 gi|68568466|gb|AAY81395.1| conserved 4Fe-4S binding domain protein [Sulfolobus acidocaldarius
           DSM 639]
          Length = 277

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  CV VCPV   F   E+ +  +  ++CI C  C   CP  
Sbjct: 95  YNIPINCFHCMNAPCVPVCPVGATFKRVEDGIVLVDYNKCIGCKYCIYGCPYG 147


>gi|121613356|ref|YP_001001226.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006119|ref|ZP_02271877.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249630|gb|EAQ72589.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|107770406|gb|ABF83738.1| anaerobic dimethyl sulfoxide reductase subunit B-like protein
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 218

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 65  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 124

Query: 61  PGL 63
            G 
Sbjct: 125 SGH 127


>gi|311280100|ref|YP_003942331.1| putative oxidoreductase, 4Fe-4S subunit [Enterobacter cloacae SCF1]
 gi|308749295|gb|ADO49047.1| putative oxidoreductase, 4Fe-4S subunit [Enterobacter cloacae SCF1]
          Length = 158

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C++  CV  CPV     GE  +      CI C  C   CP   I  +  
Sbjct: 51  CHQCENAPCVAACPVRALTMGEERVEADSARCIGCQSCVVACPFGVITIEMP 102


>gi|300785105|ref|YP_003765396.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
 gi|299794619|gb|ADJ44994.1| Fe-S-cluster-containing hydrogenase [Amycolatopsis mediterranei
           U32]
          Length = 346

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI--KPDT 59
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I  +PD 
Sbjct: 163 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIDRRPDD 219


>gi|293416140|ref|ZP_06658780.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
 gi|291432329|gb|EFF05311.1| oxidoreductase Fe-S binding subunit [Escherichia coli B185]
          Length = 644

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C  +CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIDCPFGVVEMVDTIAQK 116


>gi|168333855|ref|ZP_02692098.1| hypothetical protein Epulo_03060 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 224

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +   CI C    C   C  D  Y+ E    I    C +CG C   CP +AI
Sbjct: 171 IGSGCISCG--KCKRECSFDAIYQDERQYKIDGSRCDECGSCFLVCPANAI 219



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 40  CIDCGVCEPECPVDAIKPDTEP 61
           CI CG C+ EC  DAI  D   
Sbjct: 175 CISCGKCKRECSFDAIYQDERQ 196


>gi|157415803|ref|YP_001483059.1| hypothetical protein C8J_1484 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386767|gb|ABV53082.1| hypothetical protein C8J_1484 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748441|gb|ADN91711.1| Anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           jejuni subsp. jejuni M1]
 gi|315931264|gb|EFV10234.1| dimethylsulfoxide reductase, chain B [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 218

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 65  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 124

Query: 61  PGL 63
            G 
Sbjct: 125 SGH 127


>gi|189424213|ref|YP_001951390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189420472|gb|ACD94870.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 256

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 5   VTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEP 61
           +   C  C    CV+ CPV     ++  + + +H DE CI C  C+  CP  A   D   
Sbjct: 60  IPVLCNHCSDAPCVKACPVKPKAMFKTPDGITMHNDERCIGCRRCQKACPYSA--MDVAK 117

Query: 62  GLELWLKINSEYATQWPNITTKK 84
               +  I++   T+ P+  ++ 
Sbjct: 118 EKAEYSVISANSGTEAPHKASRD 140


>gi|94969628|ref|YP_591676.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551678|gb|ABF41602.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 261

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C    C  VCPV    + E    I+ +  C+ C  C   CP    K + E  L  
Sbjct: 60  CQHCLEPACASVCPVGALQKTEIGPVIYEEHRCMGCRYCMAACPFGVPKYEWEKPLPQ 117


>gi|66735109|gb|AAY53799.1| putative oxidoreductase [Campylobacter jejuni]
          Length = 219

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            Y  + +C  C +  C++ CP     + +  +  I    CI C  C   CP  A + + E
Sbjct: 65  AYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDSMCIGCKACAMACPYGAPQFNHE 124

Query: 61  PGL 63
            G 
Sbjct: 125 SGH 127


>gi|56412594|ref|YP_149669.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197361529|ref|YP_002141165.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|56126851|gb|AAV76357.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197093005|emb|CAR58438.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
          Length = 287

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDDTLTIAAAHCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDD 213


>gi|330835594|ref|YP_004410322.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera cuprina Ar-4]
 gi|329567733|gb|AEB95838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera cuprina Ar-4]
          Length = 87

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V  + C  CK   C++VCP   +    + + +H + C++CG     CP DAI      G
Sbjct: 22 VNLDICRTCKEKPCIKVCPAGTYERSGDVIEVHYERCLECGAALVACPFDAISFKFPEG 80


>gi|289193023|ref|YP_003458964.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus sp.
           FS406-22]
 gi|288939473|gb|ADC70228.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus sp.
           FS406-22]
          Length = 269

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y + ENC+ C    C+++C  D   +      I+P  C  CG CE  C  +AI+P
Sbjct: 63  YKINENCVKCG--KCLDICQFDAIED----FKINPILCEGCGACELICEFNAIEP 111


>gi|258627118|ref|ZP_05721914.1| electron transport complex protein RnfB [Vibrio mimicus VM603]
 gi|258580636|gb|EEW05589.1| electron transport complex protein RnfB [Vibrio mimicus VM603]
          Length = 195

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|282600278|ref|ZP_05973699.2| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rustigianii DSM 4541]
 gi|282565941|gb|EFB71476.1| anaerobic dimethyl sulfoxide reductase, B subunit [Providencia
          rustigianii DSM 4541]
          Length = 161

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           +T +C  C    C++VCP + + +  + + +   ++CI C +C   CP  A   D   G
Sbjct: 31 FITMSCNHCDDPQCLKVCPANTYSKRADGIVVQDHEKCIGCQMCIMACPYHAPVFDPAEG 90


>gi|150401639|ref|YP_001325405.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014342|gb|ABR56793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 398

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV +NC+ C    C  VCPV+      +   +  ++CI C VC   CP +AI 
Sbjct: 143 VVMDNCVGCGV--CPPVCPVEAITMENDRAVVDTEKCIYCSVCAQTCPWNAIF 193



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +E CI C    C E+CP D    + +N     P  C  CG+C   CPVDA+  D +
Sbjct: 212 SEKCIGC--IACAEICPGDMIKIDSKNIAVELPKACPACGLCVGVCPVDALYLDVD 265



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCF------------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+LC+   CV +CP+D                      +  D C+ CGVC P CPV+AI 
Sbjct: 107 CVLCEL--CVGICPIDIISIPNKIDNPKKEIPSPKEAIVVMDNCVGCGVCPPVCPVEAIT 164

Query: 57  PDTE 60
            + +
Sbjct: 165 MEND 168



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C+LC    CV  CP        + +  +P +C  CG C   C   
Sbjct: 50 CVLCL--SCVNACPTGALCVINDTINYNPIKCTKCGACAKVCTTG 92



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF---------LAIHPDECIDCGVCEPECPV 52
             V TE CI C  + C + CP +  +                +  ++CI C  C   CP 
Sbjct: 170 AVVDTEKCIYC--SVCAQTCPWNAIFVNGKMPTKRHKKIDFKLDSEKCIGCIACAEICPG 227

Query: 53  DAIKPDTE 60
           D IK D++
Sbjct: 228 DMIKIDSK 235



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C EVCP D     E   ++    CI CG C   CP  A+K
Sbjct: 288 KKCAEVCPTDAIVINEESKSV--KMCIVCGACATTCPTGALK 327



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 10/53 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVD 53
           CI+C    C   CP      G         N +  +P  C  CG C   CP+D
Sbjct: 311 CIVCG--ACATTCPTGALKVGNIKHNGKDYNRIVFNPSMCNSCGDCVGVCPMD 361


>gi|312793474|ref|YP_004026397.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312876011|ref|ZP_07736000.1| Fe-S cluster domain protein [Caldicellulosiruptor lactoaceticus
          6A]
 gi|311797209|gb|EFR13549.1| Fe-S cluster domain protein [Caldicellulosiruptor lactoaceticus
          6A]
 gi|312180614|gb|ADQ40784.1| Fe-S cluster domain protein [Caldicellulosiruptor kristjanssonii
          177R1B]
          Length = 443

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 12 EKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57


>gi|309389497|gb|ADO77377.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 329

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C  + C +VCPVD     +N   I  ++C++CG C  +CP   I+ +
Sbjct: 218 CIAC--SLCAKVCPVDAIEIKDNLAVIDYEKCVNCGKCAEKCPTGTIQFE 265



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + +NC+ C  T C   CPV+    E +N   I  D+CI CG+C   C V A+
Sbjct: 274 INDNCVGC--TLCARACPVEAIEGEVKNRHQIDQDKCIQCGLCFEACNVKAV 323



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
              DC  VCP D  Y  EN L  I P++C  CG C  ECP
Sbjct: 145 GFGDCESVCPFDAIYMSENGLPQIDPEKCTACGKCITECP 184



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C+ C    C E CP     +EG+    + I+ D C+ C +C   CPV+AI+ + +   
Sbjct: 245 EKCVNCG--KCAEKCPTGTIQFEGKMIEKVEIN-DNCVGCTLCARACPVEAIEGEVKNRH 301

Query: 64  E 64
           +
Sbjct: 302 Q 302


>gi|301062599|ref|ZP_07203231.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300443279|gb|EFK07412.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 249

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
           NC+ C+   CVE CP    Y+      + I    CI CG C P CP  A
Sbjct: 60  NCMQCEKPTCVEACPTGATYKDPLDGTVRIDRRLCIGCGQCLPACPYGA 108


>gi|290475319|ref|YP_003468207.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
 gi|289174640|emb|CBJ81434.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 110 AFIDEENCIGC--TKCIQACPVDAIIGANRAIHTVVEDLCTGCDLCVAPCPTDCI 162


>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M Y V    C  C    C +VCP+ C   GE      I   +C  CGVC  +CP  AI
Sbjct: 540 MKYTVEASKCKSCG--ICAKVCPMSCIK-GEKKVPYVIDNTKCAKCGVCMEKCPFKAI 594


>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 623

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP             I  D CI CG C+  C  DA+  +
Sbjct: 568 HINPEFCIGCG--KCAKNCPAGAISGKIKHPYHIDNDICIKCGACKDNCNFDAVYVE 622



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I+P+ CI CG C   CP  AI
Sbjct: 565 RQFHINPEFCIGCGKCAKNCPAGAI 589


>gi|224050711|ref|XP_002196899.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial [Taeniopygia guttata]
          Length = 235

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 134 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 190



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 134 ERCIACKLCEAVCPAQAITIEAEPRAD 160



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 175 CIYCGF--CQEACPVDAIVEGPNF 196


>gi|241949545|ref|XP_002417495.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor,
           putative; mitochondrial complex I, NUIM subunit,
           putative [Candida dubliniensis CD36]
 gi|223640833|emb|CAX45148.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 247

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 146 ERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 202



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E 
Sbjct: 127 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE 169



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 187 CIYCGY--CQESCPVDAIVETPNVEY 210


>gi|218885423|ref|YP_002434744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756377|gb|ACL07276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 169

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C+  +CV+VCP       E +  + +  D+CI CG C   CP    + + +  
Sbjct: 59  PCFHCEQPECVDVCPTGAMTKREADGIVYVEADDCIGCGACLEACPWHIPQWNEDGD 115


>gi|119871679|ref|YP_929686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673087|gb|ABL87343.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 220

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP +  Y+  + L  +    CI C  C   CP  A+  D +
Sbjct: 63  CQHCDKPYCVATCPTNALYKDRDGLVKLRESSCIGCRYCLAACPYGAVWWDEK 115


>gi|24375983|ref|NP_720026.1| iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
 gi|24350982|gb|AAN57470.1|AE015883_1 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 558

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV +CP     +G +   L      C+ CG+CE  CP   I
Sbjct: 423 VNVEKCTLC--MSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVI 474



 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D        + + P  C   G C   CP  AI  D      L   +N      
Sbjct: 203 CLNFCPADAISSVAKKIEVDPYLCHGAGSCASTCPTGAISYDLPTPQALHSYLNKMISRY 262

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 263 REQAQTAPVI 272


>gi|23014022|ref|ZP_00053863.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 376

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+E C       C   CP         E    L+  P  CIDCG+C   CP  A+  D  
Sbjct: 253 VSEACNNSG--ACAAHCPTQALQSWVGEAAEGLSFDPRSCIDCGLCVSACPGSALSFDRS 310

Query: 61  PG 62
            G
Sbjct: 311 AG 312



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C E CPV       +   +  + C+ CG C   CPV AI+
Sbjct: 27 ACAEGCPVAAIEAMGDVPTV-SETCVGCGSCAVACPVGAIE 66


>gi|257460004|ref|ZP_05625108.1| iron-sulfur cluster-binding domain protein [Campylobacter gracilis
           RM3268]
 gi|257442445|gb|EEV17584.1| iron-sulfur cluster-binding domain protein [Campylobacter gracilis
           RM3268]
          Length = 406

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 15  TDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             CVEVCP     + +      F  I    CI CG C   CP  A+K   +    ++ +I
Sbjct: 61  APCVEVCPTVAILKNDEKRELVFSYID---CIGCGACVSVCPSGALKF-AKLPQSVFGEI 116

Query: 70  NSEYATQWP 78
              YA + P
Sbjct: 117 AKLYAGKIP 125


>gi|227831507|ref|YP_002833287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|229580456|ref|YP_002838856.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|229580894|ref|YP_002839293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|284999058|ref|YP_003420826.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
 gi|227457955|gb|ACP36642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus L.S.2.15]
 gi|228011172|gb|ACP46934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.G.57.14]
 gi|228011610|gb|ACP47371.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
          islandicus Y.N.15.51]
 gi|284446954|gb|ADB88456.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
          islandicus L.D.8.5]
          Length = 89

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   C +VCP   +    +   I H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICLTCKDKPCTKVCPAGTYEPSPDGRIIVHYERCLECGAALVACPYGAIKFRFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|160934810|ref|ZP_02082196.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753]
 gi|156866263|gb|EDO59635.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753]
          Length = 206

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T  C  C    C  VCP  C         I    C+ CG C   CP  AI+
Sbjct: 153 YFITTGCTGCGD--CETVCPQSCIDLISVPAVIKQAHCLHCGNCYEICPAKAIE 204


>gi|120014|sp|P00193|FER_PEPAS RecName: Full=Ferredoxin
          Length = 54

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+ ++CI C    C   CPV+   +  +  AI  D CIDCG C   CPV A  P+ 
Sbjct: 1  AYVINDSCIACG--ACKPECPVN--IQQGSIYAIDADSCIDCGSCASVCPVGAPNPED 54


>gi|134300798|ref|YP_001114294.1| glycyl-radical activating family protein [Desulfotomaculum
          reducens MI-1]
 gi|134053498|gb|ABO51469.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
          reducens MI-1]
          Length = 297

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + CI C    CVE C       G     IH + C  CG C   CP  A
Sbjct: 53 DRCIGCGD--CVETCVNQAILPGG----IHKERCRRCGQCAAVCPTLA 94



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 21 CPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CP+ C         + E  L   PD CI CG C   C   AI P
Sbjct: 29 CPLKCLWCHNPESQDPEPQLMFWPDRCIGCGDCVETCVNQAILP 72


>gi|284165623|ref|YP_003403902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284015278|gb|ADB61229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 224

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPGLEL 65
           C  C++  CV VCP +    E + F+++H D C+ C  C   CP  A   PD+  G   
Sbjct: 92  CYHCENAPCVSVCPTNALQKEDDGFVSVHEDLCVGCQYCLSGCPFGAPQFPDSNDGAAQ 150


>gi|183985165|ref|YP_001853456.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium marinum M]
 gi|183178491|gb|ACC43601.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium marinum M]
          Length = 296

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 115 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVIE 166


>gi|171059653|ref|YP_001792002.1| RnfABCDGE type electron transport complex subunit B [Leptothrix
           cholodnii SP-6]
 gi|170777098|gb|ACB35237.1| electron transport complex, RnfABCDGE type, B subunit [Leptothrix
           cholodnii SP-6]
          Length = 224

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C  T C++ CPVDC   G   +   I  D C  C +C P CPVD I+ + 
Sbjct: 89  CIGC--TLCIKACPVDCIVGGHKRMHSVIEAD-CTGCELCLPACPVDCIQVEV 138



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 24  DCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +C  EG   +  I    CI C +C   CPVD I
Sbjct: 72  ECGTEGPRTVVWIDEAWCIGCTLCIKACPVDCI 104


>gi|167569319|ref|ZP_02362193.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 288

 Score = 53.2 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I     
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPV 137

Query: 58  -DTEPGLELWLKINSEYATQ 76
              + G + W +  ++ A  
Sbjct: 138 TGEKTGWDAWSQQQADAART 157


>gi|325959022|ref|YP_004290488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330454|gb|ADZ09516.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 460

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLEL 65
           C  C+   C+  CPVD  ++ E+      D+C+ C +C   CP +AI   T   EP  E 
Sbjct: 30  CEACEDKPCLMSCPVDAIWKTEDGKIEIDDKCVGCVLCREACPYNAINMKTTLSEPIREN 89

Query: 66  WLKINSEYATQW 77
              IN++   Q 
Sbjct: 90  VPNINTKLCRQC 101



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ +NCI C    C+  CPV C   E  + + I  D C+ CG C   C  +AI+   E
Sbjct: 316 VIEDNCIGCG--ACMSECPVKCIELEMPSPVHID-DRCVHCGKCIETCQFNAIELAEE 370



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C+ C    CV  CP +     ++ + +  ++CI CG C+  CPV+AIK  TE
Sbjct: 399 EACMACG--ICVRKCPTNALKLEKDEVIVDTEKCILCGECDIICPVNAIKLKTE 450



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 6   TENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ C  C    CV+ C             E    I+ D C+ CG C   CP +AIK 
Sbjct: 95  TKLCRQCG--ACVKACKTGSIQLISSGNEEAHSEINEDTCVRCGYCARVCPTEAIKY 149



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 10/76 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + C+ C    C E CP +             EN   I+   C  CG C   C   +I+
Sbjct: 57  IDDKCVGC--VLCREACPYNAINMKTTLSEPIRENVPNINTKLCRQCGACVKACKTGSIQ 114

Query: 57  PDTEPGLELWLKINSE 72
             +    E   +IN +
Sbjct: 115 LISSGNEEAHSEINED 130



 Score = 40.5 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPV-DAI 55
           + C+ C +  C  VCP +    GE           + ++  +CI C  C   CP   AI
Sbjct: 130 DTCVRCGY--CARVCPTEAIKYGEILPRSVVGGKAIVVNQKDCIGCMTCTKVCPSRGAI 186



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 4   VVTENCILCKHTDCVEVCP-VDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  ++CI C    C +VCP       G+      I+P  C  C  C   CP  AIK 
Sbjct: 165 VNQKDCIGC--MTCTKVCPSRGAINVGKVSKLPFINPSYCARCEECMNVCPSAAIKY 219



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 24/79 (30%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL----------------------AIHPDECID 42
           + + C+ C    C+E C  +     E +                           + C+ 
Sbjct: 346 IDDRCVHCG--KCIETCQFNAIELAEEYFKVEDGKIFFKRDALTGQREGKIVTDVEACMA 403

Query: 43  CGVCEPECPVDAIKPDTEP 61
           CG+C  +CP +A+K + + 
Sbjct: 404 CGICVRKCPTNALKLEKDE 422


>gi|320527824|ref|ZP_08028992.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204]
 gi|320131761|gb|EFW24323.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204]
          Length = 254

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V++ CI C  T C + CPV      EN      +EC  C  C   CP  AI  
Sbjct: 185 VSDACIGC--TLCAKKCPVTAIEMRENKPVWVKEECTMCLGCLHRCPKHAIFY 235


>gi|300987856|ref|ZP_07178407.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 200-1]
 gi|300306004|gb|EFJ60524.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 200-1]
 gi|324011433|gb|EGB80652.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 60-1]
          Length = 239

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNIT 81
           +      +  A  +P I 
Sbjct: 167 KCDFCAETRLAKGFPPIC 184


>gi|262043980|ref|ZP_06017063.1| hydrogenase-4 component A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259038658|gb|EEW39846.1| hydrogenase-4 component A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 173

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C  C+   C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 49 QMCHHCEDAPCATVCPVNAIQRVDGAVQLNESLCVSCKLCGIACPFGAIEF 99


>gi|239908372|ref|YP_002955113.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Desulfovibrio magneticus RS-1]
 gi|239798238|dbj|BAH77227.1| molybdopterin oxidoreductase iron-sulfur binding subunit
           [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
            C+ C++  CV VCPV   ++ +  +  I  D CI C  C   CP  A
Sbjct: 84  PCMQCENPPCVAVCPVTATWKNKQGVTVIDYDRCIGCRYCLTACPYGA 131


>gi|254167532|ref|ZP_04874384.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197623795|gb|EDY36358.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
          Length = 62

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C    CV  CPV+C +  E  + I  D+CI CG C   CPV AI  D
Sbjct: 11 CNYCG--ACVGSCPVNCMFLDETIVRIDEDKCIKCGFCIRACPVGAISAD 58


>gi|20094920|ref|NP_614767.1| flavoprotein [Methanopyrus kandleri AV19]
 gi|19888159|gb|AAM02697.1| Archaea-specific flavoprotein [Methanopyrus kandleri AV19]
          Length = 246

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V+ E C  C    CV+ CP       +    I    C+ CG C   CP DAI    E  +
Sbjct: 145 VLRERCEGCG--ICVDACPRSAIDMVDGKAFIRLLRCVGCGKCAEACPEDAIHGGLEYEM 202

Query: 64  E 64
            
Sbjct: 203 R 203


>gi|50123379|ref|YP_052546.1| electron transport protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613905|emb|CAG77358.1| electron transport protein [Pectobacterium atrosepticum SCRI1043]
          Length = 173

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D      + + +    CI C  C   CP  AI
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAI 103



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 17/77 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------EGENF---LAIHP-DECIDCGV---CEP 48
           V+   CI CK   CV  CP             EGE       +H  D C+D      C  
Sbjct: 83  VIQSRCIGCK--SCVVACPFGAINVVTKASNDEGEAHPTQSEVHKCDLCVDVAQSPSCVS 140

Query: 49  ECPVDAIKPDTEPGLEL 65
            CP  A++  T   L  
Sbjct: 141 VCPTSALRLVTADELRK 157


>gi|84386976|ref|ZP_00990000.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio splendidus
           12B01]
 gi|84378266|gb|EAP95125.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrio splendidus
           12B01]
          Length = 206

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++  C  C +  CV+VCP    ++ +    + +    CI C  C   CP  A + + 
Sbjct: 60  SYYLSIACNHCTNPACVKVCPSGAMHKRDEDGLVVVDESVCIGCQHCSNACPYGAPQYNA 119

Query: 60  EPGL 63
           + G 
Sbjct: 120 KKGH 123


>gi|332799832|ref|YP_004461331.1| Fe-S cluster domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332697567|gb|AEE92024.1| Fe-S cluster domain protein [Tepidanaerobacter sp. Re1]
          Length = 443

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C  T+C++ CP +          I  ++CIDCG C   CP  A
Sbjct: 16 DKCKGC--TNCIKGCPTEAIRVRNGKAHILDNKCIDCGECIRICPNSA 61


>gi|325960196|ref|YP_004291662.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325331628|gb|ADZ10690.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 771

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 20/73 (27%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCE 47
            + C  C    C E+C ++   E                    +  +I PD CI CG C 
Sbjct: 240 GDRCTSCG--RCAEICSINVPDEFNFNLTLRNAAYKPFAGALPSSFSIDPDACIKCGKCV 297

Query: 48  PECPVDAIKPDTE 60
             CPVDAI  +++
Sbjct: 298 EACPVDAINLESK 310



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C  C    C+E CP    Y  +  + + P  C  CG C   C   A+        
Sbjct: 580 DRCNQCL--SCLEQCPAKAIYL-DKMVEVDPVACTGCGYCVSLCETKALSLPLYSDQ 633



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            NF  +  D C  C  C  +CP  AI  D
Sbjct: 572 PNFAVLDQDRCNQCLSCLEQCPAKAIYLD 600


>gi|317484987|ref|ZP_07943870.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316923725|gb|EFV44928.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 294

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    C E C  D   +  +   I P  C  CGVC   CP  AI    +   E +
Sbjct: 66  DACRRCG--ICFEHCRFDAVKKDGDVYGIDPLRCEGCGVCVALCPAKAIAFPEKECGEWY 123

Query: 67  L 67
           +
Sbjct: 124 V 124


>gi|312127646|ref|YP_003992520.1| Fe-S cluster domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777665|gb|ADQ07151.1| Fe-S cluster domain protein [Caldicellulosiruptor hydrothermalis
          108]
          Length = 443

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +      +   I    CIDCG C   CP  A
Sbjct: 12 EKCKGC--TNCIKRCPTEAIRVRNSKARIIDQRCIDCGECIRTCPYHA 57


>gi|306815076|ref|ZP_07449232.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli NC101]
 gi|305851724|gb|EFM52177.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli NC101]
 gi|324007028|gb|EGB76247.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 57-2]
          Length = 239

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNIT 81
           +      +  A  +P I 
Sbjct: 167 KCDFCAETRLAKGFPPIC 184


>gi|167948048|ref|ZP_02535122.1| polysulfide reductase, subunit B, putative [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 177

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA----IKPDTEPGL 63
          C  C +  C+ VCP    Y+ +N +  +  D C+ C  C   CP DA       D E G 
Sbjct: 27 CNHCDNPPCMSVCPTGATYKMDNGIVMVDEDLCMGCRACAMACPYDARRAVTYDDVEKGK 86

Query: 64 ELWLK 68
            + +
Sbjct: 87 AFYGE 91


>gi|186475080|ref|YP_001856550.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Burkholderia phymatum STM815]
 gi|184191539|gb|ACC69504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phymatum STM815]
          Length = 85

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCVQVCPVEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|88608014|ref|YP_506692.1| NADH dehydrogenase subunit I [Neorickettsia sennetsu str. Miyayama]
 gi|115502534|sp|Q2GCV4|NUOI_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88600183|gb|ABD45651.1| NADH dehydrogenase I, I subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 160

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 21/99 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                       I   +CI CG C+  CPVDAI
Sbjct: 58  ERCIACKL--CEVVCPAQAITIEAAPRESDGSRRATKYDIDMTKCIYCGFCQEACPVDAI 115

Query: 56  KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
               E     + + N E       +  KK+ L + +K +
Sbjct: 116 ---VEGPNFEFARENRE-----DLLYDKKKLLDNGSKWE 146


>gi|327401443|ref|YP_004342282.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316951|gb|AEA47567.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 659

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            ++  E C  C    C+ +CP       E      ++P  C  CG C   CP  A +   
Sbjct: 587 AFIREERCSGC--RICIGMCPYGAISFDEEKGVAVVNPAMCRGCGTCVAACPSKAAQQYL 644

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 645 FRDEQIYAEI 654



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            N   I  + C  C +C   CP  AI  D E G
Sbjct: 584 PNIAFIREERCSGCRICIGMCPYGAISFDEEKG 616


>gi|312797358|ref|YP_004030280.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312169133|emb|CBW76136.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 90

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I PD+C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYLIDPDKCTECIGHFDEPQCVQVCPVEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|254166869|ref|ZP_04873723.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289596256|ref|YP_003482952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aciduliprofundum boonei T469]
 gi|197624479|gb|EDY37040.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289534043|gb|ADD08390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aciduliprofundum boonei T469]
          Length = 62

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C    CV  CPV+C +  E  + I  D+CI CG C   CPV AI  D
Sbjct: 11 CNYCG--ACVGSCPVNCMFLDETIVRIDEDKCIKCGFCIRACPVGAISAD 58


>gi|163931196|pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor
          Protein From Pyrococcus Abysii
          Length = 607

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 27 DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 84

Query: 56 KPDTEPGL 63
               P  
Sbjct: 85 SIVNLPEQ 92


>gi|167916633|ref|ZP_02503724.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 112]
 gi|254187013|ref|ZP_04893528.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934696|gb|EDO90366.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|114762113|ref|ZP_01441581.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114545137|gb|EAU48140.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 249

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    CV VCP    +   E+ + +  +E CI CG+C   CP  A + D   G
Sbjct: 81  SCLHCDDAPCVTVCPTGASYKRVEDGIVLVEEEACIGCGLCAWACPYGARELDLAAG 137


>gi|57235074|ref|YP_180863.1| [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit, putative
           [Dehalococcoides ethenogenes 195]
 gi|57225522|gb|AAW40579.1| [Ni/Fe] hydrogenase, iron-sulfur cluster-binding subunit, putative
           [Dehalococcoides ethenogenes 195]
          Length = 267

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    CV VCPV   ++      +   D+C  C  C+  CP    K + +     
Sbjct: 73  CLHCYEPACVSVCPVGALHKRPTGAVVWDQDKCFGCRYCQNACPFQIPKFEWDDNWAK 130


>gi|26247920|ref|NP_753960.1| putative ferredoxin-like protein ydhX [Escherichia coli CFT073]
 gi|227885913|ref|ZP_04003718.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|300995335|ref|ZP_07181032.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 45-1]
 gi|301051000|ref|ZP_07197845.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 185-1]
 gi|26108323|gb|AAN80525.1|AE016761_100 Putative ferredoxin-like protein ydhX [Escherichia coli CFT073]
 gi|227837092|gb|EEJ47558.1| formate-dependent nitrite reductase [Fe-S] protein [Escherichia
           coli 83972]
 gi|300297333|gb|EFJ53718.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 185-1]
 gi|300406168|gb|EFJ89706.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 45-1]
 gi|312946271|gb|ADR27098.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315290549|gb|EFU49923.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 153-1]
          Length = 239

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNIT 81
           +      +  A  +P I 
Sbjct: 167 KCDFCAETRLAKGFPPIC 184


>gi|14521449|ref|NP_126925.1| putative ATPase RIL [Pyrococcus abyssi GE5]
 gi|5458668|emb|CAB50155.1| ABC transporter ATP-binding protein [Pyrococcus abyssi GE5]
          Length = 593

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 13 DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 70

Query: 56 KPDTEPGL 63
               P  
Sbjct: 71 SIVNLPEQ 78


>gi|305665372|ref|YP_003861659.1| putative iron-sulfur protein [Maribacter sp. HTCC2170]
 gi|88710127|gb|EAR02359.1| probable iron-sulfur protein [Maribacter sp. HTCC2170]
          Length = 472

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEPGLEL 65
           +CI CK   CV VCP +        L     ECI+C  C  EC  DAI    D   GL  
Sbjct: 268 DCIDCKQ--CVHVCPTNIDIRNGTQL-----ECINCTACIDEC--DAIMEKIDKPKGLIR 318

Query: 66  W 66
           +
Sbjct: 319 Y 319


>gi|268678836|ref|YP_003303267.1| cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616867|gb|ACZ11232.1| Cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 292

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + ++  E C  C    C +VC  D          +    C  CG CE  C ++AI  +  
Sbjct: 61  LAHIDPETCRNCG--RCAKVCRFDAIVLENGRYVVDELSCEGCGYCEKVCRLNAISMNER 118

Query: 61  PGLELWL 67
                + 
Sbjct: 119 LAGAWFT 125


>gi|258623674|ref|ZP_05718660.1| electron transport complex protein RnfB [Vibrio mimicus VM573]
 gi|262171979|ref|ZP_06039657.1| electron transport complex protein RnfB [Vibrio mimicus MB-451]
 gi|258584040|gb|EEW08803.1| electron transport complex protein RnfB [Vibrio mimicus VM573]
 gi|261893055|gb|EEY39041.1| electron transport complex protein RnfB [Vibrio mimicus MB-451]
          Length = 195

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|167899982|ref|ZP_02487383.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 7894]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|145589226|ref|YP_001155823.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047632|gb|ABP34259.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 163

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIGCKL--CEAVCPAYAITIETAERDDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +T    +
Sbjct: 62 ERCIGCKLCEAVCPAYAITIETAERDD 88


>gi|315187124|gb|EFU20881.1| Fe-S cluster domain protein [Spirochaeta thermophila DSM 6578]
          Length = 574

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y VT +C  C    C+  CPV           +  + C+ CG C   CP  A
Sbjct: 8  YTVTSDCFDC--YKCIRECPVKAIRISSGRAEVVEELCLYCGHCVEVCPSGA 57


>gi|297627205|ref|YP_003688968.1| Anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922970|emb|CBL57552.1| Anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 214

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TY  + +C  C+   CV+VCP     + ++    +   +C+ C  CE  C   A + + E
Sbjct: 69  TYYTSISCNHCEDPLCVQVCPTTAMTQRDDGTVFVDQSKCVGCRYCEWACAYGAPQFNAE 128

Query: 61  PGL 63
            G 
Sbjct: 129 AGH 131


>gi|261252304|ref|ZP_05944877.1| NrfC protein [Vibrio orientalis CIP 102891]
 gi|260935695|gb|EEX91684.1| NrfC protein [Vibrio orientalis CIP 102891]
          Length = 229

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    Y  E    + +H D+C+ CG C   CP      + E G
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKDKCVGCGYCLAACPYQVRFFNPEDG 154


>gi|186920127|ref|YP_001874781.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
 gi|186461073|gb|ACC78235.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
          Length = 163

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP           Y+G        I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPAQAITIEAEPRYDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 118



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + EP
Sbjct: 62 ERCIACKLCEAVCPAQAITIEAEP 85



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 103 CIFCGF--CQEACPVDAIVEGPNFEY 126


>gi|158522075|ref|YP_001529945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510901|gb|ABW67868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V T+ C  C+   C++ C +       ++   +  + CI CG+C   CP  AI    +P 
Sbjct: 274 VDTDECTGCE--ACLDRCQMGAIRLNADDVAEVDLNRCIGCGLCVTTCPTQAITLVAKPE 331

Query: 63  LE 64
            E
Sbjct: 332 PE 333



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 9   CILCKHTDCV------EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C     V         P +      ++  +  DEC  C  C   C + AI+ + +  
Sbjct: 243 CNCCGDCCGVLVALKKHPRPAE-IVFANHYAQVDTDECTGCEACLDRCQMGAIRLNADDV 301

Query: 63  LELWLKINS 71
            E  + +N 
Sbjct: 302 AE--VDLNR 308


>gi|67641868|ref|ZP_00440634.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|217424178|ref|ZP_03455677.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 576]
 gi|251768078|ref|ZP_02269399.2| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20]
 gi|254182460|ref|ZP_04889054.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1655]
 gi|254205447|ref|ZP_04911800.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU]
 gi|254262448|ref|ZP_04953313.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1710a]
 gi|147755033|gb|EDK62097.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU]
 gi|184212995|gb|EDU10038.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1655]
 gi|217392643|gb|EEC32666.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 576]
 gi|238522879|gb|EEP86321.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|243060877|gb|EES43063.1| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20]
 gi|254213450|gb|EET02835.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1710a]
          Length = 276

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|324999411|ref|ZP_08120523.1| formate dehydrogenase beta subunit [Pseudonocardia sp. P1]
          Length = 346

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 166 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVI 216


>gi|258515969|ref|YP_003192191.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779674|gb|ACV63568.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +++ C+ C    C  VCPV    + EN   I  ++CI C  C   CP +A
Sbjct: 190 ISDKCLQCGF--CARVCPVGAI-DLENSALIDKEKCILCCACIKGCPENA 236



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +F++I  D+C+ CG C   CPV AI  +
Sbjct: 186 DFISI-SDKCLQCGFCARVCPVGAIDLE 212


>gi|167761220|ref|ZP_02433347.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC
          35704]
 gi|167660886|gb|EDS05016.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC
          35704]
          Length = 468

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + CI C   +C++ CP            I P+ C+DCG C   CP  A
Sbjct: 24 DACIGC--INCIKYCPTQAIRVHNGKAKITPEFCVDCGRCLRYCPHHA 69



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          +  D CI C  C   CP  AI+
Sbjct: 21 LDEDACIGCINCIKYCPTQAIR 42


>gi|297582957|ref|YP_003698737.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141414|gb|ADH98171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 225

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA-IKPDTEPGL 63
           T  C  C +  C  +CP    Y  E+  + +  D+CI C  C   CP +A I  + +   
Sbjct: 99  TAQCNHCHNAPCERICPTQATYLNEDGIMVMDHDKCIGCKGCVAACPYNARIWSEAKQTP 158

Query: 64  EL 65
           E 
Sbjct: 159 EK 160


>gi|45358387|ref|NP_987944.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
 gi|44921145|emb|CAF30380.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
          Length = 397

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VTE+C+ C    C+  CPV           +  D CI C +C   CP +AI 
Sbjct: 131 VTEDCVGCGV--CISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIF 180



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V ++ CI C    C + CP D        +A+ P  C  CG+C+  CPVDAI+   E
Sbjct: 198 VDSDLCIGCGD--CTDKCPRDLIVL-NEMVAVPPKGCPACGLCKAACPVDAIELVVE 251



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVD 53
           CI C    CV+ CP D    G+          +   P+ C  CG C   CP D
Sbjct: 310 CIRCG--ACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYD 360



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECP 51
             V  ++CI C  + C + CP +  +                ++  D CI CG C  +CP
Sbjct: 157 AVVDKDSCIYC--SICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCP 214

Query: 52  VDAI 55
            D I
Sbjct: 215 RDLI 218



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCP-----VDCFYEGENFLAIHPDE-------CIDCGVCEPECPVDAIK 56
           C+ C    CV+ CP     ++   E        P E       C+ CGVC  ECPV A+ 
Sbjct: 94  CVGC--MKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALS 151

Query: 57  PDTE 60
            + E
Sbjct: 152 IEGE 155


>gi|315453072|ref|YP_004073342.1| ferredoxin, 4Fe-4S [Helicobacter felis ATCC 49179]
 gi|315132124|emb|CBY82752.1| ferredoxin, 4Fe-4S [Helicobacter felis ATCC 49179]
          Length = 84

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V++ CI C    C E CP +   E +    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVSQECIACD--ACREECPTEAIDENDPIYNIDPDRCTECIGYSDEPNCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IMPD 62


>gi|296415821|ref|XP_002837584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633457|emb|CAZ81775.1| unnamed protein product [Tuber melanosporum]
          Length = 232

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 131 ERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 188

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 189 ESP----------NAEYATE 198


>gi|295097941|emb|CBK87031.1| hypothetical protein ENC_37430 [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 291

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT  C+  +        C +VCPV  F   ++ +++    CI+CG C   CP +AI
Sbjct: 12 VTHACVRRRFRHASCLACADVCPVQAFSFTDSSVSVDDSRCIECGDCLFVCPAEAI 67



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TE+C+LC    C   C  +        L +    C  CG CE  C   AI
Sbjct: 190 TESCVLCG--ACWRSCTENAIRFENAELVVETGRCTGCGGCEAVCQHAAI 237


>gi|297526580|ref|YP_003668604.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255496|gb|ADI31705.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 406

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CI C    C +VC  +        EG+    ++ D C  CG+C   CP  AI  + E  
Sbjct: 350 CIGCGF--CEQVCDYNAVKVLPSEEGKRIAQVNHDLCYGCGLCTSVCPTRAIHFEEELD 406



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
            + P +CI CG CE  C  +A+K       +   ++N + 
Sbjct: 344 VVDPRKCIGCGFCEQVCDYNAVKVLPSEEGKRIAQVNHDL 383


>gi|255656166|ref|ZP_05401575.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-23m63]
 gi|296450400|ref|ZP_06892156.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP08]
 gi|296879477|ref|ZP_06903471.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP07]
 gi|296260661|gb|EFH07500.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP08]
 gi|296429623|gb|EFH15476.1| probable iron-sulfur subunit of hydrogenase [Clostridium difficile
           NAP07]
          Length = 151

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI C    C++VCP +CF + E F+ +    CI C +CE  C   A
Sbjct: 65  ACIHCDEPKCLDVCPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGA 111


>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
 gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
          Length = 622

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C  + C   CP     EG  ++   I+ ++CI CG C  +CP  AI  +
Sbjct: 571 EICKGC--SKCARNCPAGAI-EGVLKSPYHINQEKCIKCGACMEQCPFKAIHIE 621



 Score = 40.5 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIK 56
               I P+ C  C  C   CP  AI+
Sbjct: 564 RKFQIDPEICKGCSKCARNCPAGAIE 589


>gi|212223688|ref|YP_002306924.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
 gi|212008645|gb|ACJ16027.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
          Length = 163

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
          V  NC  C+   C+EVCP    Y  E+  + I   +CI C +C   CP 
Sbjct: 41 VPLNCRHCEKAPCIEVCPTKAIYRDEDGAVVIDESKCIGCYMCSAVCPY 89


>gi|226505580|ref|NP_001149640.1| LOC100283266 [Zea mays]
 gi|194703360|gb|ACF85764.1| unknown [Zea mays]
 gi|195605168|gb|ACG24414.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
 gi|195628756|gb|ACG36208.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
          Length = 223

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEERED 148



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNF 184


>gi|167748568|ref|ZP_02420695.1| hypothetical protein ANACAC_03341 [Anaerostipes caccae DSM 14662]
 gi|167651882|gb|EDR96011.1| hypothetical protein ANACAC_03341 [Anaerostipes caccae DSM 14662]
          Length = 416

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  TENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          TE+C  C     C   C  D   E +  L+I PD+C  CGVC   C
Sbjct: 52 TESCESCAYDRACKNSCIFDAIEEVDGKLSIDPDKCSGCGVCIESC 97


>gi|20089551|ref|NP_615626.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19914464|gb|AAM04106.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 6
           (predicted alternative beta subunit) [Methanosarcina
           acetivorans C2A]
          Length = 264

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP       E    I  ++C  CG C   CP  AI+
Sbjct: 217 CIGCK--KCEKECPAGAIRVTEFLAEIDQEKCTACGACVAICPQKAIE 262



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           CV+ C       GE+    ++   C  CG C   CP
Sbjct: 148 CVQACQFGALSMGEDGFPVVNKALCTSCGNCIAACP 183


>gi|332752022|gb|EGJ82415.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           4343-70]
 gi|332999188|gb|EGK18775.1| cytochrome c nitrite reductase, Fe-S protein [Shigella flexneri
           K-218]
          Length = 223

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHVPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|332528759|ref|ZP_08404736.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624]
 gi|332041825|gb|EGI78174.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624]
          Length = 180

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 79  ERCIACKL--CEAVCPAMAITIESDARADGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 135



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  +++   +
Sbjct: 79  ERCIACKLCEAVCPAMAITIESDARAD 105


>gi|317479124|ref|ZP_07938264.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316904696|gb|EFV26510.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 300

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +  ++C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEEKCTACGACAKACPKSIIE 189



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 21/74 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAI-----HPDE-----------CIDCG 44
           V  E C  C    C + CP        +G+    I     + D+           CI CG
Sbjct: 168 VDEEKCTACG--ACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCG 225

Query: 45  VCEPECPVDAIKPD 58
            C   CP +AI  +
Sbjct: 226 KCVKVCPFEAITLE 239


>gi|315122717|ref|YP_004063206.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496119|gb|ADR52718.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 159

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            ++G        I   +CI CG+C+  CPVDAI
Sbjct: 57  ERCIACKL--CEAVCPAQAITIESGPRLHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 114



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  ++ P
Sbjct: 57 ERCIACKLCEAVCPAQAITIESGP 80



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|296159919|ref|ZP_06842740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
 gi|295889902|gb|EFG69699.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           sp. Ch1-1]
          Length = 251

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDFDRCIGCKYCAWACPYGARELDE 125


>gi|224824815|ref|ZP_03697922.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002]
 gi|224603308|gb|EEG09484.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002]
          Length = 162

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESEQRDDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD 87


>gi|183599240|ref|ZP_02960733.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827]
 gi|188021470|gb|EDU59510.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827]
          Length = 208

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVIEDLCTGCDLCVAPCPTDCIE 163



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + CI C  C   CPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|167757175|ref|ZP_02429302.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402]
 gi|167703350|gb|EDS17929.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402]
          Length = 202

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+++  CI C    C   CP  C   G     I  D C+ CG+C   CPV AI+
Sbjct: 149 YLISNRCIACD--RCKRECPQQCIKSGS-KYKIMQDHCLHCGLCYENCPVRAIE 199


>gi|121607727|ref|YP_995534.1| FAD/NAD(P)-binding oxidoreductase subunit [Verminephrobacter
          eiseniae EF01-2]
 gi|121552367|gb|ABM56516.1| benzoyl-CoA oxygenase, component A [Verminephrobacter eiseniae
          EF01-2]
          Length = 424

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+     E+   +  + C  C  C P CP  AI
Sbjct: 18 EICIRCN--TCEATCPVNAITHDEHNYVVRAELCNACLACIPPCPTGAI 64



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I P+ CI C  CE  CPV+AI  D 
Sbjct: 15 IDPEICIRCNTCEATCPVNAITHDE 39


>gi|66047983|ref|YP_237824.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|71735790|ref|YP_276890.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|289672461|ref|ZP_06493351.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. syringae FF5]
 gi|302188123|ref|ZP_07264796.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. syringae 642]
 gi|63258690|gb|AAY39786.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas syringae pv.
          syringae B728a]
 gi|71556343|gb|AAZ35554.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326363|gb|EFW82416.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331646|gb|EFW87584.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330872369|gb|EGH06518.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330898969|gb|EGH30388.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. japonica str.
          M301072PT]
 gi|330944157|gb|EGH46276.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954989|gb|EGH55249.1| ferredoxin, 4Fe-4S [Pseudomonas syringae Cit 7]
 gi|330957094|gb|EGH57354.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. maculicola str.
          ES4326]
 gi|330970962|gb|EGH71028.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. aceris str.
          M302273PT]
 gi|330980017|gb|EGH78283.1| ferredoxin, 4Fe-4S [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 83

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I+P+ C +C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISQGEEIYVINPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEP 61
          I  D   
Sbjct: 59 IPLDENH 65


>gi|148255905|ref|YP_001240490.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1]
 gi|156632578|sp|A5EK90|NUOI_BRASB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146408078|gb|ABQ36584.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1]
          Length = 162

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 595

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV E+ C  C    C +VCPV     E      I   +C+ C  C   CP +AI
Sbjct: 542 FVVAEDRCKKCG--ICFKVCPVGAITWEKGKVAYIDKSKCVKCRECIVNCPFNAI 594



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
             +  D C  CG+C   CPV AI  +
Sbjct: 542 FVVAEDRCKKCGICFKVCPVGAITWE 567


>gi|238020170|ref|ZP_04600596.1| hypothetical protein GCWU000324_00041 [Kingella oralis ATCC
          51147]
 gi|237868564|gb|EEP69568.1| hypothetical protein GCWU000324_00041 [Kingella oralis ATCC
          51147]
          Length = 83

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPETH 69


>gi|224023565|ref|ZP_03641931.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM
           18228]
 gi|224016787|gb|EEF74799.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM
           18228]
          Length = 261

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  C   +C+EVCP    Y   +   I    + CI C  C  ECP  A   D+ 
Sbjct: 186 VCNDLCYACG--NCIEVCPTHAIYLSADGSQIETIAERCIRCCACVKECPTGARIFDSP 242



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 14/42 (33%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           P      G N   +  D C  CG C   CP  AI    +   
Sbjct: 173 PYKPLPAGNNATPVCNDLCYACGNCIEVCPTHAIYLSADGSQ 214


>gi|218130044|ref|ZP_03458848.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697]
 gi|217987764|gb|EEC54091.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697]
          Length = 277

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C +  C   CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDTELCNHCGY--CAVHCPASAIKKGDE-CYTDAEKCIRCCACVKGCPQKARTFDTP 258


>gi|126458164|ref|YP_001077136.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106a]
 gi|134281741|ref|ZP_01768448.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 305]
 gi|167908290|ref|ZP_02495495.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei NCTC 13177]
 gi|237507755|ref|ZP_04520470.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           MSHR346]
 gi|242312856|ref|ZP_04811873.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106b]
 gi|126231932|gb|ABN95345.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106a]
 gi|134246803|gb|EBA46890.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 305]
 gi|234999960|gb|EEP49384.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           MSHR346]
 gi|242136095|gb|EES22498.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 1106b]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|53723318|ref|YP_112303.1| iron-sulfur cluster protein [Burkholderia pseudomallei K96243]
 gi|167924487|ref|ZP_02511578.1| iron-sulfur cluster protein [Burkholderia pseudomallei BCC215]
 gi|52213732|emb|CAH39786.1| iron-sulfur cluster protein [Burkholderia pseudomallei K96243]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|89901118|ref|YP_523589.1| RnfABCDGE type electron transport complex subunit B [Rhodoferax
           ferrireducens T118]
 gi|89345855|gb|ABD70058.1| electron transport complex, RnfABCDGE type, B subunit [Rhodoferax
           ferrireducens T118]
          Length = 232

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-- 58
            ++  + CI C  T C+E CP D        +  +    C  C +C P CPVD IK +  
Sbjct: 77  AFIDEDWCIGC--TLCIEACPTDAILGSNKLMHTVIEAYCTGCELCLPVCPVDCIKLENV 134

Query: 59  --TEPGLELWLKINSEYATQ 76
                G   W +  ++ A  
Sbjct: 135 TKAATGWAAWSRQQADLAQI 154



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 22/83 (26%), Gaps = 36/83 (43%)

Query: 9  CILCKHTDC-------------VEVCPVDC----------------------FYEGENFL 33
          C  C + DC             +  CP                           E    +
Sbjct: 17 CTRCGYRDCAAYAQAVSTGAAGINQCPPGGEQGIAWLATITGQAVRALNPVHGAETPRSV 76

Query: 34 -AIHPDECIDCGVCEPECPVDAI 55
            I  D CI C +C   CP DAI
Sbjct: 77 AFIDEDWCIGCTLCIEACPTDAI 99


>gi|82543961|ref|YP_407908.1| oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
 gi|81245372|gb|ABB66080.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
          Length = 239

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 154


>gi|53715919|ref|YP_106560.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76818979|ref|YP_336603.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1710b]
 gi|121597376|ref|YP_990671.1| iron-sulfur cluster-binding protein [Burkholderia mallei SAVP1]
 gi|126443292|ref|YP_001064213.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 668]
 gi|167829879|ref|ZP_02461350.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 9]
 gi|226199217|ref|ZP_03794777.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pakistan 9]
 gi|254176209|ref|ZP_04882867.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           10399]
 gi|254192604|ref|ZP_04899043.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei S13]
 gi|254203576|ref|ZP_04909937.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH]
 gi|254296602|ref|ZP_04964058.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 406e]
 gi|52421889|gb|AAU45459.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76583452|gb|ABA52926.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1710b]
 gi|121225174|gb|ABM48705.1| iron-sulfur cluster-binding protein [Burkholderia mallei SAVP1]
 gi|126222783|gb|ABN86288.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 668]
 gi|147745815|gb|EDK52894.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH]
 gi|157806448|gb|EDO83618.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 406e]
 gi|160697251|gb|EDP87221.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           10399]
 gi|169649362|gb|EDS82055.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei S13]
 gi|225928624|gb|EEH24651.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei Pakistan 9]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|16767556|ref|NP_463171.1| anaerobic dimethylsulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|56416103|ref|YP_153178.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161617453|ref|YP_001591418.1| hypothetical protein SPAB_05310 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552241|ref|ZP_02345994.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991519|ref|ZP_02572618.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231324|ref|ZP_02656382.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237018|ref|ZP_02662076.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243727|ref|ZP_02668659.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263351|ref|ZP_02685324.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467011|ref|ZP_02700859.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821231|ref|ZP_02833231.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444405|ref|YP_002043556.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447805|ref|YP_002048297.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470496|ref|ZP_03076480.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736806|ref|YP_002117241.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249022|ref|YP_002149221.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265548|ref|ZP_03165622.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197365029|ref|YP_002144666.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198243354|ref|YP_002218197.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387281|ref|ZP_03213893.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205355074|ref|YP_002228875.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859459|ref|YP_002246110.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224586070|ref|YP_002639869.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238912763|ref|ZP_04656600.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|16422868|gb|AAL23130.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56130360|gb|AAV79866.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161366817|gb|ABX70585.1| hypothetical protein SPAB_05310 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403068|gb|ACF63290.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406109|gb|ACF66328.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456860|gb|EDX45699.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712308|gb|ACF91529.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630641|gb|EDX49253.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096506|emb|CAR62115.1| anaerobic dimethyl sulfoxide reductase subunit B [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197212725|gb|ACH50122.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243803|gb|EDY26423.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289949|gb|EDY29308.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937870|gb|ACH75203.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604379|gb|EDZ02924.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205274855|emb|CAR39918.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323045|gb|EDZ10884.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330101|gb|EDZ16865.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334192|gb|EDZ20956.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337283|gb|EDZ24047.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342183|gb|EDZ28947.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347982|gb|EDZ34613.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206711262|emb|CAR35639.1| anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224470598|gb|ACN48428.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261249404|emb|CBG27268.1| anaerobic dimethyl sulfoxide reductase chain A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996633|gb|ACY91518.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301160798|emb|CBW20329.1| anaerobic dimethyl sulfoxide reductase chain A [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915407|dbj|BAJ39381.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088715|emb|CBY98473.1| putative dimethyl sulfoxide reductase chain B protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223179|gb|EFX48249.1| Anaerobic dimethyl sulfoxide reductase chain B [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322615461|gb|EFY12381.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618521|gb|EFY15410.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622066|gb|EFY18916.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627138|gb|EFY23930.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631097|gb|EFY27861.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637684|gb|EFY34385.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642495|gb|EFY39096.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643629|gb|EFY40183.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650550|gb|EFY46958.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653503|gb|EFY49833.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659670|gb|EFY55913.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662120|gb|EFY58336.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666133|gb|EFY62311.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672553|gb|EFY68664.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675982|gb|EFY72053.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680467|gb|EFY76505.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684638|gb|EFY80642.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323132647|gb|ADX20077.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|323194622|gb|EFZ79814.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197169|gb|EFZ82309.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201714|gb|EFZ86778.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206228|gb|EFZ91190.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213238|gb|EFZ98040.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215610|gb|EGA00354.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222032|gb|EGA06418.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227899|gb|EGA12053.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229068|gb|EGA13197.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236321|gb|EGA20397.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237559|gb|EGA21620.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241775|gb|EGA25804.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248077|gb|EGA32014.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254592|gb|EGA38403.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258349|gb|EGA42026.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259627|gb|EGA43261.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265899|gb|EGA49395.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270342|gb|EGA53790.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625997|gb|EGE32342.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|326630229|gb|EGE36572.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
 gi|332991121|gb|AEF10104.1| putative anaerobic dimethylsulfoxide reductase subunit B
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 208

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++ +    + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118

Query: 60  EPG 62
           +  
Sbjct: 119 QAN 121


>gi|83310159|ref|YP_420423.1| ferredoxin [Magnetospirillum magneticum AMB-1]
 gi|82945000|dbj|BAE49864.1| Ferredoxin [Magnetospirillum magneticum AMB-1]
          Length = 99

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C + CP +   +GE    I P+ C +C        C   CPVD 
Sbjct: 1  MALLITDQCINCDV--CEQECPNEAITQGEEIFVIDPNRCTECVGHYDYPQCIEHCPVDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IIVDPD 64


>gi|319790804|ref|YP_004152444.1| benzoyL-CoA oxygenase/reductase, boxa protein [Variovorax
          paradoxus EPS]
 gi|315593267|gb|ADU34333.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax
          paradoxus EPS]
          Length = 429

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI---------KP 57
          E CI C    C   CPV+     +N   +  D C  C  C   CP  +I         + 
Sbjct: 18 EICIRCN--TCEATCPVNAITHDDNNYVVRADVCNGCMACISPCPTGSIDNWRTMPLVRA 75

Query: 58 DTEPGLELWLKINSEY 73
           T      W ++ +E 
Sbjct: 76 YTIEEQLTWEELPAEL 91



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV+AI  D  
Sbjct: 15 IDPEICIRCNTCEATCPVNAITHDDN 40


>gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 594

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 540 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 591


>gi|307266193|ref|ZP_07547736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918797|gb|EFN49028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 126

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          VVT  CI CK+  C+ VCP          + I  ++C+ CG+C   CP   IK
Sbjct: 47 VVT--CIQCKNAVCIRVCPSKAIKRQNGIVKIDKEKCVGCGICAQYCPQSVIK 97


>gi|258620204|ref|ZP_05715243.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM573]
 gi|258587562|gb|EEW12272.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM573]
          Length = 244

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 114 SCQHCENPPCVYVCPTGATYKDEATGIVDVHKERCVGCGYCIAACPYQ 161


>gi|257790270|ref|YP_003180876.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830451|ref|ZP_08163908.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|257474167|gb|ACV54487.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487918|gb|EGC90356.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 221

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C   +CV+VCP    ++ E+    I   +CI C  C   CP +    + E 
Sbjct: 58  YYLPVQCQHCADPECVKVCPTGASHKLEDGTVQIDKAKCIGCQFCAMSCPYNVRYLNEEE 117

Query: 62  G 62
           G
Sbjct: 118 G 118


>gi|239813114|ref|YP_002942024.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax
          paradoxus S110]
 gi|239799691|gb|ACS16758.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax
          paradoxus S110]
          Length = 428

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+     +N   +  D C  C  C   CP  +I
Sbjct: 18 EICIRCN--TCEATCPVNAITHDDNNYVVRADICNGCMACISPCPTGSI 64



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV+AI  D  
Sbjct: 15 IDPEICIRCNTCEATCPVNAITHDDN 40


>gi|194218557|ref|XP_001498476.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Equus
           caballus]
          Length = 210

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAEPRAD 135



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|170726903|ref|YP_001760929.1| electron transport complex protein RnfB [Shewanella woodyi ATCC
           51908]
 gi|169812250|gb|ACA86834.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVAPCPVDCI 159



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP 37
           M  V+T+ C  C    CV  CPVDC     + L I P
Sbjct: 136 MHTVITDYCTGCDL--CVAPCPVDCI----DMLPITP 166


>gi|90425971|ref|YP_534341.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90107985|gb|ABD90022.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 192

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C  VCP     +    + I   +CI C +C   CP  AI
Sbjct: 67  CRQCEDAPCTMVCPTGSCRQANGQIEIVEQQCIGCKLCVMVCPFGAI 113


>gi|270296900|ref|ZP_06203099.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272887|gb|EFA18750.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +  ++C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEEKCTACGACAKACPKSIIE 189


>gi|255728045|ref|XP_002548948.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240133264|gb|EER32820.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 231

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 130 ERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 186



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E 
Sbjct: 111 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE 153



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 171 CIYCGY--CQESCPVDAIVETPNVEY 194


>gi|225414543|ref|ZP_03761732.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme
           DSM 15981]
 gi|225041922|gb|EEG52168.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme
           DSM 15981]
          Length = 367

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +V  E C+ C    C + C        +   +I   +C+ CG C   CP+DA+
Sbjct: 189 PFVNQELCVGCG--SCKKNCAHGAITIEDRKASIDVSKCVGCGRCIGACPLDAV 240


>gi|254173144|ref|ZP_04879817.1| oxidoreductase iron-sulfur protein [Thermococcus sp. AM4]
 gi|214032553|gb|EEB73382.1| oxidoreductase iron-sulfur protein [Thermococcus sp. AM4]
          Length = 165

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          + V  NC  C+   C+ VCP    +  E+      P +CI C +C   CP    K D E
Sbjct: 40 FTVPFNCRHCEKAPCLNVCPTGALFRDEDGAVAFDPLKCIGCLMCAVACPFGIPKLDEE 98


>gi|157363272|ref|YP_001470039.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga lettingae TMO]
 gi|157313876|gb|ABV32975.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           lettingae TMO]
          Length = 356

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V +E C+ C    C   CPV+       F AI+ D CI CG C   C   A+ P  +   
Sbjct: 189 VASEKCVAC--RMCERNCPVNAITV-SKFAAINYDVCIGCGQCIAMCNYGAMVPKWDSSS 245

Query: 64  ELWLKINSEY 73
           E+  K  +EY
Sbjct: 246 EILSKKMAEY 255



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           E+   +  ++C+ C +CE  CPV+AI       +  +  IN
Sbjct: 184 ESKPVVASEKCVACRMCERNCPVNAI------TVSKFAAIN 218


>gi|83590477|ref|YP_430486.1| aldo/keto reductase [Moorella thermoacetica ATCC 39073]
 gi|83573391|gb|ABC19943.1| Aldo/keto reductase [Moorella thermoacetica ATCC 39073]
          Length = 315

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           + E C  C   +CV  CP       E    + P+ CI CG C   C
Sbjct: 264 IEEWCQGCG--NCVRRCPQGALEVIEGRAVVDPERCILCGYCAGAC 307


>gi|329955029|ref|ZP_08296010.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|328526319|gb|EGF53334.1| ferredoxin [Bacteroides clarus YIT 12056]
          Length = 321

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP   I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQGTI 265



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVVACQFDAIHMNPETGLPEVDEAKCTACGACAKACPRSIIE 189


>gi|328952559|ref|YP_004369893.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfobacca acetoxidans DSM 11109]
 gi|328452883|gb|AEB08712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfobacca acetoxidans DSM 11109]
          Length = 1003

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 2    TYVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
             YV  + C  C    CV+ CP  V    E +N   I+   C  CG C  ECP   I+   
Sbjct: 933  AYVEPDRCAACLV--CVKTCPFGVPRINE-DNVSEINTALCQGCGTCASECPAKVIQLAH 989

Query: 60   EPGLELWLKINSEY 73
                +    I + +
Sbjct: 990  YEDEKFKANIMASF 1003



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 21/75 (28%), Gaps = 20/75 (26%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECIDCGVCEPEC 50
           C  C    C +VCPV    E    L                  AI    CI CG+C   C
Sbjct: 113 CTGCGD--CRKVCPVRAVNEFNAGLDLREATYIRYPQAVPLAFAIDRQVCIGCGLCGQVC 170

Query: 51  PVDAIKPDTEPGLEL 65
              AI          
Sbjct: 171 LAGAINYLDTARQRE 185



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            + P +C  CG C   CPV A+
Sbjct: 107 YLDPVKCTGCGDCRKVCPVRAV 128


>gi|315505893|ref|YP_004084780.1| formate dehydrogenase beta subunit [Micromonospora sp. L5]
 gi|315412512|gb|ADU10629.1| formate dehydrogenase beta subunit [Micromonospora sp. L5]
          Length = 347

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 167 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCISACPYGVI 217


>gi|257791430|ref|YP_003182036.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317490572|ref|ZP_07949047.1| formate dehydrogenase [Eggerthella sp. 1_3_56FAA]
 gi|325831451|ref|ZP_08164705.1| putative formate dehydrogenase, beta subunit [Eggerthella sp. HGA1]
 gi|257475327|gb|ACV55647.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316910321|gb|EFV31955.1| formate dehydrogenase [Eggerthella sp. 1_3_56FAA]
 gi|325486705|gb|EGC89153.1| putative formate dehydrogenase, beta subunit [Eggerthella sp. HGA1]
          Length = 307

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +C  C    C  +CP       E   F+++   +CI C  C   CP D  + 
Sbjct: 78  SCQHCTDAPCATICPGGALKKDEATGFVSVDESKCIGCRYCSTACPFDVPQY 129


>gi|257790280|ref|YP_003180886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830177|ref|ZP_08163634.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474177|gb|ACV54497.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487644|gb|EGC90082.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 206

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C++ +CV+VCP    ++ E+    I   +CI C  C   CP      + E 
Sbjct: 59  YFLNVQCQHCENPECVKVCPTGASHKTEDGTVQIDKSKCIGCQFCAMSCPYGVRYLNEEE 118


>gi|255527518|ref|ZP_05394386.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255508788|gb|EET85160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 195

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELW 66
           C  C+   C + CPVD       ++ +   +CI C  C   CP+ AI   P+ + G  ++
Sbjct: 60  CRQCEDALCAKACPVDAISTKNGYVQVEEGKCIGCKTCTVACPIGAIDMIPEFKDGKRVF 119

Query: 67  ---LKINSEYATQ 76
              +K+N E ++Q
Sbjct: 120 QAKIKVNDENSSQ 132


>gi|295107121|emb|CBL04664.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 253

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C+   C+  CPV   Y  E   A  +  D CI CG+C   CP +    D+E G
Sbjct: 150 EHCKQCEDPACMNYCPVHAIYADEKSGARKVDADRCIGCGMCSQACPWNMPVVDSETG 207


>gi|281356261|ref|ZP_06242754.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
 gi|281317630|gb|EFB01651.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
          Length = 491

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C+ C    CV  CP  C    +    I  + C+ C  C   CPV AI        
Sbjct: 215 EQCVKCG--KCVRSCPSGCIALAKG--EIDNERCVRCMNCFSACPVGAIHYGHPAAA 267



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 9/57 (15%)

Query: 5   VTENCILCKHT----DCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPV 52
           +   C+          C E CP        +   I       + CI CG CE  CPV
Sbjct: 392 IPPLCVAVADGTDCGACAEHCPTGALRMEPDSRGIRIPKLTSELCIGCGSCEYACPV 448



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 17  CVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  VCPV          G   L +  ++C+ CG C   CP   I
Sbjct: 189 CTAVCPVGTLLGLAAKSGWFRLTLDKEQCVKCGKCVRSCPSGCI 232



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 15/60 (25%)

Query: 16  DCVEVCPVDCFYE----GENFLAI-----HPDECI------DCGVCEPECPVDAIKPDTE 60
           +C  VCP           +    I      P  C+      DCG C   CP  A++ + +
Sbjct: 363 NCGRVCPTGAIVPMALPDKRRCRIGLAEYIPPLCVAVADGTDCGACAEHCPTGALRMEPD 422


>gi|302867706|ref|YP_003836343.1| formate dehydrogenase subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|302570565|gb|ADL46767.1| formate dehydrogenase beta subunit [Micromonospora aurantiaca ATCC
           27029]
          Length = 347

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 167 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCISACPYGVI 217


>gi|227503750|ref|ZP_03933799.1| possible formate dehydrogenase beta subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199574|gb|EEI79622.1| possible formate dehydrogenase beta subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 352

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C +  C++VCP    +  E   + +  D C  CG C   CP   I+   + G
Sbjct: 122 SDVCKHCTNAGCLDVCPTGALFRSEFGTVVVQDDVCNGCGTCVAGCPFGVIERRDDGG 179


>gi|261856152|ref|YP_003263435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothiobacillus neapolitanus c2]
 gi|261836621|gb|ACX96388.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Halothiobacillus neapolitanus c2]
          Length = 81

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP     +G     I P+ C +C        C   CPVD 
Sbjct: 1  MSLLITDECINCDV--CEPECPNGAISQGPEIYVIDPNLCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P      E   ++ ++Y
Sbjct: 59 I-PLDPDNRETHDELLAKY 76


>gi|218701203|ref|YP_002408832.1| electron transport protein HydN [Escherichia coli IAI39]
 gi|218371189|emb|CAR19020.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Escherichia
           coli IAI39]
          Length = 175

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C++  C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCENAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|167744330|ref|ZP_02417104.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei 14]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 125


>gi|39995180|ref|NP_951131.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens PCA]
 gi|39981942|gb|AAR33404.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens PCA]
 gi|298504185|gb|ADI82908.1| oxidoreductase, iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens KN400]
          Length = 257

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            + V + C  C +  CV+VCPV   Y+  + +  +    CI CG C   CP  
Sbjct: 123 AFFVPKLCNQCDNPPCVQVCPVGATYKTVDGVVLVDRSWCIGCGYCIMGCPYG 175


>gi|11466187|ref|NP_066510.1| NADH dehydrogenase subunit 8 [Naegleria gruberi]
 gi|10444222|gb|AAG17788.1|AF288092_13 NADH dehydrogenase subunit 8 [Naegleria gruberi]
          Length = 159

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             G        I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEVVCPALAITIDSAQQLNGSRQTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          + CI C +CE  CP  AI  D+
Sbjct: 58 ERCIACKLCEVVCPALAITIDS 79


>gi|296104389|ref|YP_003614535.1| electron transport protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058848|gb|ADF63586.1| electron transport protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 186

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +    CI C  C   CP  A++    P
Sbjct: 63  CRQCEDAPCANVCPNGAIKREKGFVHVMQARCIGCKTCVVACPYGAMEVVVRP 115


>gi|218779702|ref|YP_002431020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761086|gb|ACL03552.1| Periplasmic formate dehydrogenase FdhABC, beta subunit (iron-sulfur
           subunit) [Desulfatibacillum alkenivorans AK-01]
          Length = 263

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CPV    +            CI C  C+  CP +A + +    
Sbjct: 74  CNHCIEPACVTACPVGALTKTAEGPVHYDESRCIGCRYCQVVCPFNAPRFEWNDP 128


>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
          Length = 624

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 2   TYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY++ E  C  C  + C + CP      E ++   I   +CI CG C   CP  A+ 
Sbjct: 567 TYIIDEETCRGC--SKCAKGCPAGAIAGELKHVFTIRQQQCIKCGACAEACPFGAVH 621



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             I  + C  C  C   CP  AI  + + 
Sbjct: 568 YIIDEETCRGCSKCAKGCPAGAIAGELKH 596


>gi|118472264|ref|YP_886216.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118173551|gb|ABK74447.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 304

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E + + +  D C  CG C   CP   I+
Sbjct: 124 SDVCKHCTHAGCLDVCPTGALFRTEFSTVVVQQDICNGCGYCVSGCPYGVIE 175


>gi|110598040|ref|ZP_01386319.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans
          DSM 13031]
 gi|110340299|gb|EAT58793.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans
          DSM 13031]
          Length = 62

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +TE C  C    C   CPV+    G++   I    C+DC        C   CPVD 
Sbjct: 1  MAHRITETCTYCG--ACEPECPVNAITAGDDIYIIDETTCVDCIGFHDEAACVQVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|55378121|ref|YP_135971.1| formate dehydrogenase-O iron-sulfur subunit [Haloarcula marismortui
           ATCC 43049]
 gi|55230846|gb|AAV46265.1| formate dehydrogenase-O iron-sulfur subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 220

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V   C  C +  CV VCP D     EN    +  D CI C  C   CP  A +   E  
Sbjct: 85  VPMQCYHCSNAPCVSVCPTDSLISKENGFVRVRDDLCIGCQYCLSACPFGAPQFPDEDS 143


>gi|119776035|ref|YP_928775.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Shewanella
           amazonensis SB2B]
 gi|119768535|gb|ABM01106.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Shewanella
           amazonensis SB2B]
          Length = 230

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C+   CV VCP       +    +A++ D C+ C  C   CP     I P+T    
Sbjct: 98  SCQHCEAAPCVRVCPTGAAYIDKETGIVAVNSDRCVGCQYCIAACPYQVRYIHPETRTAD 157

Query: 64  E 64
           +
Sbjct: 158 K 158



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 24/66 (36%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG----------VCEP 48
           V ++ C+ C++  C+  CP            IHP     D+C  C            C  
Sbjct: 127 VNSDRCVGCQY--CIAACPYQV-------RYIHPETRTADKCDFCQKSRLAQGLQPACVE 177

Query: 49  ECPVDA 54
            CP  A
Sbjct: 178 ACPTKA 183


>gi|67643798|ref|ZP_00442541.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei GB8 horse 4]
 gi|121599061|ref|YP_992363.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124385577|ref|YP_001026832.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126451277|ref|YP_001079881.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|126453295|ref|YP_001065463.1| ferredoxin [Burkholderia pseudomallei 1106a]
 gi|166999900|ref|ZP_02265729.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei PRL-20]
 gi|242316966|ref|ZP_04815982.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|254175604|ref|ZP_04882264.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei ATCC 10399]
 gi|254207541|ref|ZP_04913891.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei JHU]
 gi|254258562|ref|ZP_04949616.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1710a]
 gi|254359954|ref|ZP_04976224.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei 2002721280]
 gi|121227871|gb|ABM50389.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei SAVP1]
 gi|124293597|gb|ABN02866.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei NCTC 10229]
 gi|126226937|gb|ABN90477.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106a]
 gi|126244147|gb|ABO07240.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei NCTC 10247]
 gi|147751435|gb|EDK58502.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei JHU]
 gi|148029194|gb|EDK87099.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei 2002721280]
 gi|160696648|gb|EDP86618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei ATCC 10399]
 gi|238525236|gb|EEP88664.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242140205|gb|EES26607.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|243064025|gb|EES46211.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei PRL-20]
 gi|254217251|gb|EET06635.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1710a]
          Length = 290

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|322613949|gb|EFY10885.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620318|gb|EFY17186.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625323|gb|EFY22150.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630010|gb|EFY26783.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634200|gb|EFY30935.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635899|gb|EFY32608.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643073|gb|EFY39648.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644596|gb|EFY41132.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650838|gb|EFY47230.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652998|gb|EFY49333.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659961|gb|EFY56201.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663294|gb|EFY59498.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322668780|gb|EFY64933.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674417|gb|EFY70510.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678375|gb|EFY74436.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680881|gb|EFY76915.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687183|gb|EFY83156.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323192142|gb|EFZ77375.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200646|gb|EFZ85720.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201356|gb|EFZ86422.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206756|gb|EFZ91710.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211814|gb|EFZ96646.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216173|gb|EGA00901.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220396|gb|EGA04850.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226253|gb|EGA10468.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228373|gb|EGA12504.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234194|gb|EGA18282.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237179|gb|EGA21246.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244698|gb|EGA28702.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249179|gb|EGA33097.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250702|gb|EGA34582.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323257577|gb|EGA41264.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262286|gb|EGA45847.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266159|gb|EGA49650.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268794|gb|EGA52252.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 157

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 594

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 540 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 591


>gi|313157190|gb|EFR56620.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 302

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CV +CP      G+  L   P  CI C  C   C   A   +T         
Sbjct: 235 CTQCG--RCVALCPTQAIARGDE-LHTDPARCIRCCACVKGCAFGARTFETPFAA----V 287

Query: 69  INSEYATQWPNIT 81
           ++  +A + P +T
Sbjct: 288 LSRNFARRKPPVT 300



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 9/25 (36%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG C   CP  AI    E
Sbjct: 231 DAARCTQCGRCVALCPTQAIARGDE 255


>gi|302879333|ref|YP_003847897.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans
           ES-2]
 gi|302582122|gb|ADL56133.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans
           ES-2]
          Length = 162

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIGCKL--CEAVCPAMAIKIAVAEREDGTRRTTQYDIDLTKCIFCGFCEESCPVDAI 117



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          + CI C +CE  CP  AIK
Sbjct: 61 ERCIGCKLCEAVCPAMAIK 79


>gi|227824514|ref|ZP_03989346.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
 gi|226905013|gb|EEH90931.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
          Length = 57

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +  + CI C    C   CPV    E      +    CIDC  C   CPV AI  +
Sbjct: 1  MAHKIDQDACIGCG--SCAGTCPVGAISEDNGKYKVDEASCIDCDACTGACPVGAIAAE 57


>gi|213024433|ref|ZP_03338880.1| hydrogen sulfide production: iron- sulfur subunit; electron
          transfer [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 171

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 52 SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 97


>gi|170733685|ref|YP_001765632.1| ferredoxin [Burkholderia cenocepacia MC0-3]
 gi|169816927|gb|ACA91510.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia MC0-3]
          Length = 306

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD-- 58
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCIPPCPVDCIAMLPV 137

Query: 59  --TEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 138 TGDRTGWDAWSQEQADAARE 157


>gi|204928671|ref|ZP_03219870.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204322104|gb|EDZ07302.1| protein AegA [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 157

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|167574102|ref|ZP_02366976.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia oklahomensis C6786]
          Length = 248

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|218778074|ref|YP_002429392.1| dihydropyrimidine dehydrogenase (NADP(+)) [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759458|gb|ACL01924.1| Dihydropyrimidine dehydrogenase (NADP(+)) [Desulfatibacillum
           alkenivorans AK-01]
          Length = 695

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 10  ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + C    DCV+ C  D    G +    ++ D C+ CG CE  CP   ++
Sbjct: 135 VGCLGLGDCVKACLFDAISIGPDGYPVVNADNCVGCGACERACPKGVLE 183


>gi|51894426|ref|YP_077117.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
 gi|51858115|dbj|BAD42273.1| electron transport protein [Symbiobacterium thermophilum IAM 14863]
          Length = 199

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CPV      +  + +  + CI C  C   CP  A
Sbjct: 61  CRHCEDAPCANACPVGAIVRQDGVVLVKQERCIGCKTCVLACPFGA 106


>gi|16762644|ref|NP_458261.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144131|ref|NP_807473.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415559|ref|YP_152634.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197250554|ref|YP_002148595.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197364486|ref|YP_002144123.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213052803|ref|ZP_03345681.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418298|ref|ZP_03351364.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428116|ref|ZP_03360866.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582428|ref|ZP_03364254.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213615802|ref|ZP_03371628.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213865474|ref|ZP_03387593.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585465|ref|YP_002639264.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828329|ref|ZP_06546254.1| protein AegA [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25285317|pir||AF0979 probable electron-transport protein STY4132 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504950|emb|CAD07962.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139768|gb|AAO71333.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129816|gb|AAV79322.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095963|emb|CAR61547.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214257|gb|ACH51654.1| protein AegA [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|224469993|gb|ACN47823.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 157

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|329961451|ref|ZP_08299556.1| ferredoxin [Bacteroides fluxus YIT 12057]
 gi|328531799|gb|EGF58625.1| ferredoxin [Bacteroides fluxus YIT 12057]
          Length = 315

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 41.3 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACAKACPKNIIE 189


>gi|308051326|ref|YP_003914892.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307633516|gb|ADN77818.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 205

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y V+  C  C +  CV+ CP    +    +  + +    C+ C  C   CP DA + D 
Sbjct: 63  SYYVSIGCNHCSNPVCVKACPTGAMHKRRSDGLVHVDQGICVGCEACARACPYDAPQIDK 122

Query: 60  EPG 62
           + G
Sbjct: 123 DRG 125


>gi|255526305|ref|ZP_05393221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296185227|ref|ZP_06853637.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510018|gb|EET86342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296050061|gb|EFG89485.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 417

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            + E+CI C    C + CP+D               + C+ CG+C   CP  +I      
Sbjct: 287 FIEESCIGCG--KCAKACPIDAIKIDPVTKKARTDENICLGCGICVRNCPKKSIYLKHRE 344

Query: 62  GL 63
             
Sbjct: 345 KQ 346


>gi|239904991|ref|YP_002951730.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239794855|dbj|BAH73844.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 583

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y +   C  C    C+  CPV           + P+ CI CG C   CP  A
Sbjct: 8  YTIEAECQDC--YRCLRQCPVKAIQVENGRATVVPELCIACGQCVAACPSQA 57


>gi|254477029|ref|ZP_05090415.1| iron-sulfur cluster-binding protein [Ruegeria sp. R11]
 gi|214031272|gb|EEB72107.1| iron-sulfur cluster-binding protein [Ruegeria sp. R11]
          Length = 237

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++   CI CG+C   CP  A + D   G
Sbjct: 60  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESNCIGCGLCAWSCPYGARELDLAEG 116


>gi|153869109|ref|ZP_01998797.1| DSMO reductase subunit B [Beggiatoa sp. PS]
 gi|152074346|gb|EDN71210.1| DSMO reductase subunit B [Beggiatoa sp. PS]
          Length = 244

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y  E +  + +  D+CI C  C   CP  A + D
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKREADGIVLVDYDKCIGCKYCSWACPYGAREYD 124


>gi|145255608|ref|XP_001399017.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134084609|emb|CAK97485.1| unnamed protein product [Aspergillus niger]
          Length = 224

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 123 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIV 180

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
             +          N+EYAT+     +  K++ L +  K +
Sbjct: 181 ETS----------NAEYATETREELLYNKEKLLANGDKWE 210


>gi|317470826|ref|ZP_07930207.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
 gi|316901653|gb|EFV23586.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
          3_2_56FAA]
          Length = 416

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  TENCILCK-HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          TE+C  C     C   C  D   E +  L+I PD+C  CGVC   C
Sbjct: 52 TESCESCAYDRACKNSCIFDAIEEVDGKLSIDPDKCSGCGVCIESC 97


>gi|239908987|ref|YP_002955729.1| putative electron transport protein [Desulfovibrio magneticus RS-1]
 gi|239798854|dbj|BAH77843.1| putative electron transport protein [Desulfovibrio magneticus RS-1]
          Length = 198

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C+   C  VCP        + + + P  CI C  C   CPV A
Sbjct: 62  ACRHCEAAPCAAVCPTAAVRCDASGVVVEPARCIGCKACLAVCPVGA 108


>gi|183599629|ref|ZP_02961122.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827]
 gi|188021881|gb|EDU59921.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827]
          Length = 180

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  W
Sbjct: 116 LTPDFEMGEW 125


>gi|163757590|ref|ZP_02164679.1| iron-sulfur cluster-binding protein [Hoeflea phototrophica DFL-43]
 gi|162285092|gb|EDQ35374.1| iron-sulfur cluster-binding protein [Hoeflea phototrophica DFL-43]
          Length = 248

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV VCP    +   E+ +  +  D CI CG+C   CP  A + D
Sbjct: 81  SCLHCDDAPCVTVCPTGASHKRSEDGIVLVTEDMCIGCGLCAWACPYGAREMD 133


>gi|288940992|ref|YP_003443232.1| DsrO protein [Allochromatium vinosum DSM 180]
 gi|10120478|gb|AAG13084.1| DsrO [Allochromatium vinosum DSM 180]
 gi|288896364|gb|ADC62200.1| DsrO [Allochromatium vinosum DSM 180]
          Length = 268

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+H  CV+VCP    F   +  + +    CI C  C   CP  A
Sbjct: 130 CQHCEHPPCVDVCPTGASFKRADGIVMVDRHLCIGCRYCMMACPYKA 176


>gi|325122853|gb|ADY82376.1| ferredoxin [Acinetobacter calcoaceticus PHEA-2]
          Length = 87

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCD--MCLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPDT------EPGLELWLKIN 70
          IKPD       E  LE +  +N
Sbjct: 59 IKPDHAHIENKEQLLEKFKDLN 80


>gi|309781131|ref|ZP_07675869.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
 gi|308920197|gb|EFP65856.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
          Length = 276

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E CI C  T C++ CPVD        +  +  D C  C +C P CPVD I          
Sbjct: 92  ERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDMIPVTGERT 149

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 150 GWDAWSQQQADVAR 163



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           P +   +      I P+ CI C +C   CPVDAI
Sbjct: 76  PSNGIEQPRAIAVIDPERCIGCTLCIQACPVDAI 109


>gi|297526113|ref|YP_003668137.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
 gi|297255029|gb|ADI31238.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
          Length = 295

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + ++ T+ C  C    C ++C         N    I P  C  C  C   CP +AI
Sbjct: 64  LPFIDTKKCTKCGV--CAKICDTGAILMPPNSFPVIFPRLCSGCKACYYACPYNAI 117


>gi|207743646|ref|YP_002260038.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609]
 gi|206595045|emb|CAQ61972.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609]
          Length = 265

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E+CI C  T C++ CPVD           +  D C  C +C   CPVD I          
Sbjct: 85  EHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDMVPVTGERT 142

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAA 91
           G + W +  ++ A         + +   A 
Sbjct: 143 GWDAWSQAQADVARDRYVFHNDRLAREQAE 172



 Score = 41.7 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I P+ CI C +C   CPVDAI
Sbjct: 81  VIDPEHCIGCTLCIQACPVDAI 102


>gi|168181019|ref|ZP_02615683.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|226951006|ref|YP_002806097.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|182668050|gb|EDT80029.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|226842509|gb|ACO85175.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
          Length = 449

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKHTD----CVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK  D    C   CP D     +  N   I  ++C DCG C   CP  +I
Sbjct: 81  DCSMDCKKEDGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSI 135


>gi|167567033|ref|ZP_02359949.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia oklahomensis EO147]
          Length = 252

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|160890331|ref|ZP_02071334.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492]
 gi|156860063|gb|EDO53494.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492]
          Length = 300

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEACPQNTI 265



 Score = 41.7 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +  ++C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEEKCTACGACAKACPKSIIE 189



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 21/74 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAI-----HPDE-----------CIDCG 44
           V  E C  C    C + CP        +G+    I     + D+           CI CG
Sbjct: 168 VDEEKCTACG--ACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCG 225

Query: 45  VCEPECPVDAIKPD 58
            C   CP +AI  +
Sbjct: 226 KCVKVCPFEAITLE 239


>gi|146341105|ref|YP_001206153.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. ORS278]
 gi|156632703|sp|A4YVK2|NUOI_BRASO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146193911|emb|CAL77928.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I)
           (NDH-1, chain I) [Bradyrhizobium sp. ORS278]
          Length = 162

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|121533863|ref|ZP_01665689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307374|gb|EAX48290.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 271

 Score = 52.8 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  C    CV VCP    F   +  + +    C  CG C   CP D
Sbjct: 106 QLCNHCSEPACVSVCPTGATFKRDDGIVVVDDTICWGCGYCINACPYD 153


>gi|317177092|dbj|BAJ54881.1| ferredoxin [Helicobacter pylori F16]
          Length = 83

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62



 Score = 33.6 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|299138041|ref|ZP_07031221.1| DMSO reductase anchor subunit (DmsC) [Acidobacterium sp. MP5ACTX8]
 gi|298599971|gb|EFI56129.1| DMSO reductase anchor subunit (DmsC) [Acidobacterium sp. MP5ACTX8]
          Length = 532

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C   +C++ CPVD + +     + +H  D CI C  C   CP    + + E G
Sbjct: 105 CNHCLSAECIKGCPVDAYTKDSITGIVLHSADACIGCQYCVWNCPYSVPQFNPERG 160


>gi|296242973|ref|YP_003650460.1| ABC transporter-like protein [Thermosphaera aggregans DSM 11486]
 gi|296095557|gb|ADG91508.1| ABC transporter related protein [Thermosphaera aggregans DSM
          11486]
          Length = 602

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 17 CVEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C+  CPV+           E +    I  D+CI CG+C  +CP +AI     P  
Sbjct: 21 CIRFCPVNRTKKVKAIDLSEDKTHSVIFEDKCIGCGICVKKCPFNAISIVNVPDE 75


>gi|261823786|ref|YP_003261892.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium wasabiae WPP163]
 gi|261607799|gb|ACX90285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pectobacterium wasabiae WPP163]
          Length = 169

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D      + + +    CI C  C   CP  AI
Sbjct: 57  CRQCENAPCASVCPNDALVRDRDSIQVIQSRCIGCKSCVVACPFGAI 103



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 14/88 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCG---VCEPECPV 52
           V+   CI CK   CV  CP             E         D C+D      C   CP 
Sbjct: 83  VIQSRCIGCK--SCVVACPFGAINVVTKASNDESTQSEVHKCDLCVDVAPSPSCVSVCPT 140

Query: 53  DAIKPDTEPGLELW-LKINSEYATQWPN 79
            A++  T   L    L+     A  WPN
Sbjct: 141 SALRLVTADELRKQTLEKQQRSALGWPN 168


>gi|254481239|ref|ZP_05094484.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
 gi|214038402|gb|EEB79064.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 203

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKHMHTVIVSECTGCDLCVEPCPVDCI 166


>gi|146303598|ref|YP_001190914.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701848|gb|ABP94990.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 276

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  CVEVCPV   F   ++ +  +  +ECI    C   CP  
Sbjct: 90  YNIPINCFHCMNAPCVEVCPVGATFKRTQDGIVLVDYEECIGTKYCIYACPYG 142


>gi|66046433|ref|YP_236274.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           B728a]
 gi|81308095|sp|Q4ZRI6|NUOI_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|63257140|gb|AAY38236.1| NADH-quinone oxidoreductase, chain I [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972914|gb|EGH72980.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 182

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|323486564|ref|ZP_08091886.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14163]
 gi|323694298|ref|ZP_08108472.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14673]
 gi|323400157|gb|EGA92533.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14163]
 gi|323501644|gb|EGB17532.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium symbiosum
           WAL-14673]
          Length = 454

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            +NC  CK    V+ CPV      +  + I  +EC +CG C  +CP DA+  +T+
Sbjct: 308 ADNCKGCKSCVVVDACPVSAAAVEDGTVRIPEEECNNCGRCTSKCPFDAVTEETK 362


>gi|189466149|ref|ZP_03014934.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM
           17393]
 gi|189434413|gb|EDV03398.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM
           17393]
          Length = 324

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV+VCP +      N   I P++C  C  CE  CP + I
Sbjct: 218 TVACIGCG--KCVKVCPFEAITLENNLAYIDPNKCKSCRKCEEVCPQNTI 265



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CVE C  D  +         +   +C  CG C   CP + I+
Sbjct: 142 CLGCGD--CVEACQFDAIHMNPETGLPEVDEAKCTACGACAKACPKNIIE 189


>gi|89108511|ref|AP_002291.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|170081331|ref|YP_001730651.1| 4Fe-4S ferridoxin-type protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|226524717|ref|NP_416186.4| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|253773372|ref|YP_003036203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161732|ref|YP_003044840.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli B str.
           REL606]
 gi|331642267|ref|ZP_08343402.1| putative oxidoreductase Fe-S subunit [Escherichia coli H736]
 gi|331668353|ref|ZP_08369201.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA271]
 gi|269849742|sp|P77375|YDHX_ECOLI RecName: Full=Uncharacterized ferredoxin-like protein ydhX; Flags:
           Precursor
 gi|85675068|dbj|BAA15443.2| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str. K12
           substr. W3110]
 gi|169889166|gb|ACB02873.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|226510944|gb|AAC74741.4| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|253324416|gb|ACT29018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973633|gb|ACT39304.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli B str.
           REL606]
 gi|253977828|gb|ACT43498.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|260449206|gb|ACX39628.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|309701896|emb|CBJ01208.1| putative oxidoreductase Fe-S subunit [Escherichia coli ETEC H10407]
 gi|315136312|dbj|BAJ43471.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli DH1]
 gi|331039065|gb|EGI11285.1| putative oxidoreductase Fe-S subunit [Escherichia coli H736]
 gi|331063547|gb|EGI35458.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA271]
          Length = 222

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|255318323|ref|ZP_05359558.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82]
 gi|262379067|ref|ZP_06072223.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           radioresistens SH164]
 gi|255304635|gb|EET83817.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82]
 gi|262298524|gb|EEY86437.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           radioresistens SH164]
          Length = 180

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  +++ +  Y  +   I+   +   
Sbjct: 116 LTPDFELGEYVRQDLVYEKEHLLISGPGKYPD 147


>gi|218550855|ref|YP_002384646.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ATCC 35469]
 gi|218358396|emb|CAQ91043.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ATCC 35469]
          Length = 197

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +     C  C+   C  VCPV         + +    CI C  C   CP  A++   + 
Sbjct: 91  AFTTAVACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQE 150

Query: 62  GLELWLKIN 70
                +K +
Sbjct: 151 SQVQAIKCD 159


>gi|167626343|ref|YP_001676843.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
          ATCC 25017]
 gi|241668775|ref|ZP_04756353.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254877306|ref|ZP_05250016.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
          25015]
 gi|167596344|gb|ABZ86342.1| 4Fe-4S ferredoxin [Francisella philomiragia subsp. philomiragia
          ATCC 25017]
 gi|254843327|gb|EET21741.1| ferredoxin [Francisella philomiragia subsp. philomiragia ATCC
          25015]
          Length = 81

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T++CI C    C   CP +   +GE +  I+PD+C +C        C   CP+  
Sbjct: 1  MALLITDDCINCD--ICEPECPNEAISQGEEYYEINPDKCTECVGHFEESQCTKVCPIRC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IITD 62



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
          D+CI+C +CEPECP +AI        E + +IN
Sbjct: 7  DDCINCDICEPECPNEAISQG-----EEYYEIN 34


>gi|198243858|ref|YP_002216546.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197938374|gb|ACH75707.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
          Length = 653

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGVIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|108562704|ref|YP_627020.1| ferrodoxin [Helicobacter pylori HPAG1]
 gi|207108360|ref|ZP_03242522.1| ferrodoxin [Helicobacter pylori HPKX_438_CA4C1]
 gi|107836477|gb|ABF84346.1| ferrodoxin [Helicobacter pylori HPAG1]
 gi|261839133|gb|ACX98898.1| ferrodoxin [Helicobacter pylori 52]
 gi|308063139|gb|ADO05026.1| ferrodoxin [Helicobacter pylori Sat464]
 gi|317181620|dbj|BAJ59404.1| ferredoxin [Helicobacter pylori F57]
          Length = 83

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|77917781|ref|YP_355596.1| hypothetical protein Pcar_0165 [Pelobacter carbinolicus DSM 2380]
 gi|77543864|gb|ABA87426.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 227

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T+ CI C    C   C      + E    I    C  CG C   CP  AI+
Sbjct: 170 ITDACISCG--KCQAGCSFKAISQHEGKFVIDHTRCDACGDCYMVCPAGAIE 219


>gi|34498747|ref|NP_902962.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104598|gb|AAQ60956.1| Electron transport complex protein [Chromobacterium violaceum ATCC
           12472]
          Length = 257

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI----KPDTEP 61
           ++CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I      D + 
Sbjct: 84  DSCIGC--TLCIQACPVDAIVGAAKQMHTVIADECTGCELCLAPCPVDCIDLVPVADPDD 141

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
           G    +   +  A +  +    ++   +A K   + +
Sbjct: 142 GKRERVMARAAQARKRFDARQARKDRDAADKARRLAE 178



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  D CI C +C   CPVDAI
Sbjct: 80  VIREDSCIGCTLCIQACPVDAI 101


>gi|325929561|ref|ZP_08190675.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
 gi|325540071|gb|EGD11699.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
          Length = 142

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 84  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 137


>gi|269469176|gb|EEZ80718.1| NADH dehydrogenase I chain I [uncultured SUP05 cluster bacterium]
          Length = 173

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP +                    I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPANAITIESEMRDDGTRRTTQYDIDLFKCIFCGFCEEACPVDAI 118



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP +AI  ++E
Sbjct: 62 ERCIACKLCEAVCPANAITIESE 84


>gi|240103196|ref|YP_002959505.1| putative ATPase RIL [Thermococcus gammatolerans EJ3]
 gi|239910750|gb|ACS33641.1| Predicted ATPase, RNase L inhibitor-like protein [Thermococcus
          gammatolerans EJ3]
          Length = 590

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 10 DKCNPNKCGHFLCERVCPVNRM--GGEAIIIDEENYRPIIQEASCTGCGICVHKCPFNAI 67

Query: 56 KPDTEPGL 63
               P  
Sbjct: 68 TIVNLPEQ 75


>gi|225707568|gb|ACO09630.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Osmerus mordax]
          Length = 210

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 109 ERCIACKLCEAICPAQAITIEAE 131


>gi|207725274|ref|YP_002255670.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2]
 gi|206590508|emb|CAQ37470.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2]
          Length = 265

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E+CI C  T C++ CPVD           +  D C  C +C   CPVD I          
Sbjct: 85  EHCIGC--TLCIQACPVDAIVGAPKAMHVVLADWCTGCDLCVAPCPVDCIDMVPVTGERT 142

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 143 GWDAWSQAQADVAR 156



 Score = 41.7 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I P+ CI C +C   CPVDAI
Sbjct: 81  VIDPEHCIGCTLCIQACPVDAI 102


>gi|200388401|ref|ZP_03215013.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199605499|gb|EDZ04044.1| protein AegA [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 157

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|157964943|ref|YP_001499767.1| NADH dehydrogenase subunit I [Rickettsia massiliae MTU5]
 gi|157844719|gb|ABV85220.1| NADH dehydrogenase I chain I [Rickettsia massiliae MTU5]
          Length = 162

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQAACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 61 ERCIACKLCEAICPAQAIVIEADERED 87



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C   CPVD   EG NF
Sbjct: 102 CIYCGL--CQAACPVDAIVEGPNF 123


>gi|157375704|ref|YP_001474304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318078|gb|ABV37176.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 228

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECP 51
           C+ C+   CV  CPV+     E+F     I P +CI C  C   CP
Sbjct: 102 CLQCEDAPCVAACPVNANKASEDFGFVRDIDPAKCIGCMQCIEACP 147


>gi|320353511|ref|YP_004194850.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122013|gb|ADW17559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 148

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C    C  VCP       ++  + +    C  CG C P CPVDAI  D E  
Sbjct: 54  CLACTSPPCANVCPTGALVPRKDGGVVVKKKLCNRCGACAPACPVDAIFLDPEGE 108



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C   CPVD  +         P  C+ CG+C P CP D ++      +     
Sbjct: 86  CNRCG--ACAPACPVDAIFLDPEGE---PFLCVHCGLCVPFCPHDCLELAERNEVRPDPS 140

Query: 69  INS 71
            N+
Sbjct: 141 RNA 143


>gi|307945104|ref|ZP_07660440.1| iron-sulfur cluster-binding protein [Roseibium sp. TrichSKD4]
 gi|307770977|gb|EFO30202.1| iron-sulfur cluster-binding protein [Roseibium sp. TrichSKD4]
          Length = 249

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C    CV VCP    +   E+ +  +    CI CG+C   CP  A + D
Sbjct: 82  SCLHCDTAPCVTVCPTGASYKRSEDGIVLVDESACIGCGLCAWACPYGARELD 134


>gi|239905934|ref|YP_002952673.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
 gi|239795798|dbj|BAH74787.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
          Length = 421

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 9  CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CI C    C+  CP    Y   GE     H + CI+CG C   CPV AI  +
Sbjct: 35 CIGCD--SCMGYCPTGAIYGETGEPHKIPHVEACINCGQCLTHCPVSAIYEE 84



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          F+ +   +CI C  C   CP  AI  +T    +
Sbjct: 27 FIKVDESKCIGCDSCMGYCPTGAIYGETGEPHK 59


>gi|194292353|ref|YP_002008260.1| benzoyl-CoA dioxygenase component a [Cupriavidus taiwanensis LMG
           19424]
 gi|193226257|emb|CAQ72206.1| Benzoyl-CoA dioxygenase component A [Cupriavidus taiwanensis LMG
           19424]
          Length = 426

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 28/101 (27%), Gaps = 16/101 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C    C   CPV           +  D+C  C  C   CP  +I           
Sbjct: 17  EICIRCN--TCEATCPVGAITHDSRNYVVDADKCNLCMACISPCPTGSI-----DNWRDM 69

Query: 67  LKINS---EYATQWPNITTKKES------LPSAAKMDGVKQ 98
            K+ +   E    W  +             P A     V +
Sbjct: 70  PKLRAYSVEEQLTWDALPEPLSPEQLADLAPGADMQSAVPE 110



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  D+ 
Sbjct: 14 IDPEICIRCNTCEATCPVGAITHDSR 39


>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
 gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
          Length = 640

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y+  + C  C    C   CP D    G+  +  I  D+CI CG C   CP 
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQDKCIKCGACLDTCPA 611



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I PD+C  C +C   CP DAIK
Sbjct: 562 FYIDPDKCKACMICARNCPTDAIK 585


>gi|21242137|ref|NP_641719.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107549|gb|AAM36255.1| ferredoxin II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 168

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 110 AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 163


>gi|20093900|ref|NP_613747.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886841|gb|AAM01677.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 192

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 16/73 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--------------ENFLAIHPDECIDCGVCEPECPV 52
           E CI C    CVEVCP      G                 + +  D C+ CG CE  CP 
Sbjct: 79  ERCIRCGL--CVEVCPTGAIEMGTLHEEVEERVQPPKPARIVVDSDLCVGCGKCESACPS 136

Query: 53  DAIKPDTEPGLEL 65
           DAI  +    ++ 
Sbjct: 137 DAITVEETAEVDE 149



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 7  ENCILCKHTDCVEVCPVD-------CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + CILC    C + CPV+            E    +H + CI CG+C   CP  AI+
Sbjct: 43 DRCILCG--ACADACPVEGRDGCPPAMEMSEEGPVLHKERCIRCGLCVEVCPTGAIE 97



 Score = 40.9 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKP---DT 59
           V ++ C+ C    C   CP D     E    +  + C+ C VC   CPV  AIK    DT
Sbjct: 119 VDSDLCVGCG--KCESACPSDAITV-EETAEVDEERCVLCEVCLEVCPVAGAIKLVPTDT 175

Query: 60  EPGLELWLK 68
           +  ++ W +
Sbjct: 176 DELVKRWKE 184


>gi|296166768|ref|ZP_06849191.1| formate dehydrogenase-O, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897880|gb|EFG77463.1| formate dehydrogenase-O, beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 339

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 158 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVI 208


>gi|238910299|ref|ZP_04654136.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 157

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|268593589|ref|ZP_06127810.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Providencia rettgeri DSM 1131]
 gi|291310806|gb|EFE51259.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Providencia rettgeri DSM 1131]
          Length = 184

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
            C  C++  C+E CPV+ + + E+ + + +P+ CI C  C   CP  A 
Sbjct: 56  ACNHCENPACLEACPVEAYTKREDGIVVNNPENCIGCRNCIRSCPYGAP 104


>gi|195940544|ref|ZP_03085926.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
          O157:H7 str. EC4024]
          Length = 193

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C++  CV+ CP     +  + + ++  +CI C  C   CP  
Sbjct: 33 CHHCENAPCVQSCPNGAITQHSDSVQVNQQKCIGCKACVVACPFG 77


>gi|187935352|ref|YP_001886203.1| nitroreductase family protein fused to ferredoxin domain
          [Clostridium botulinum B str. Eklund 17B]
 gi|187723505|gb|ACD24726.1| nitroreductase family protein [Clostridium botulinum B str.
          Eklund 17B]
          Length = 273

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V  E CI CK   C+  CPV      ++   I  + CI CG C   CP +A+
Sbjct: 1  MFKVNKEKCISCKQ--CINDCPVSDILLIDSKANIKNEACIKCGHCIAICPTNAV 53


>gi|184200425|ref|YP_001854632.1| putative formate dehydrogenase iron-sulfur subunit [Kocuria
           rhizophila DC2201]
 gi|183580655|dbj|BAG29126.1| putative formate dehydrogenase iron-sulfur protein [Kocuria
           rhizophila DC2201]
          Length = 404

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I+
Sbjct: 201 SDVCKHCTHAGCLDVCPTGALFRTEYGTVVVQEDICNGCGTCVAGCPFGVIE 252


>gi|168232507|ref|ZP_02657565.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168818508|ref|ZP_02830508.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194469365|ref|ZP_03075349.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194455729|gb|EDX44568.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333269|gb|EDZ20033.1| protein AegA [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205344438|gb|EDZ31202.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088084|emb|CBY97846.1| Electron transport protein hydN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 157

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|168027577|ref|XP_001766306.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682520|gb|EDQ68938.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI
Sbjct: 124 ERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 180



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 124 ERCIACKLCEAVCPAQAITIEAEERED 150



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 165 CIYCGF--CQEACPVDAIVEGPNF 186


>gi|116792080|gb|ABK26223.1| unknown [Picea sitchensis]
          Length = 224

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 123 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 179



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 123 ERCIACKLCEAICPAQAITIEAEERED 149



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 164 CIYCGF--CQEACPVDAIVEGPNF 185


>gi|163737101|ref|ZP_02144519.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
 gi|161389705|gb|EDQ14056.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
          Length = 264

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++   CI CG+C   CP  A + D   G
Sbjct: 87  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESNCIGCGLCAWSCPYGARELDLAEG 143


>gi|189423538|ref|YP_001950715.1| Fis family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189419797|gb|ACD94195.1| transcriptional regulator, Fis family [Geobacter lovleyi SZ]
          Length = 767

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 1  MTYVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  ++T  E C  C    CV  CPV      E +  I  + CI CG C   CP  A
Sbjct: 1  MQPIITYKERCRTC--YSCVRTCPVKAIKVDEGYAEIIYERCIGCGNCL-NCPQKA 53


>gi|52549490|gb|AAU83339.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27E7]
          Length = 267

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            C    C E+C VD          I  D+CI CG C   CP +A+  +TE G  +W+  N
Sbjct: 122 GCG--RCAELCRVDAISIVLGKSVIDSDKCISCGWCIRGCPHEAVI-ETERGYTMWIGGN 178



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
           G+  L I  ++   CG C   C VDAI
Sbjct: 109 GQGRLDIDEEKFNGCGRCAELCRVDAI 135


>gi|127514172|ref|YP_001095369.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126639467|gb|ABO25110.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 238

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           C  C    CV VCP    +  E +  + +  + CI C  C   CP D
Sbjct: 95  CNNCDRPSCVSVCPTGATFKREQDGIVVVDSELCIGCNYCIQACPYD 141


>gi|331647161|ref|ZP_08348255.1| putative oxidoreductase Fe-S subunit [Escherichia coli M605]
 gi|331043944|gb|EGI16080.1| putative oxidoreductase Fe-S subunit [Escherichia coli M605]
          Length = 239

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|289743757|gb|ADD20626.1| NADH-ubiquinone oxidoreductase NDUFS8/23 kDa subunit [Glossina
           morsitans morsitans]
          Length = 215

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 114 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 170



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 114 ERCIACKLCEAICPAQAITIEAEERAD 140



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 155 CIYCGF--CQEACPVDAIVEGPNF 176


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y+  E C  C    C   CP D    G+  +  I  D+CI CG C   CP 
Sbjct: 564 YIDPEKCKAC--MICARNCPTDAIKGGKGLIHTIEQDKCIKCGACLDTCPA 612



 Score = 40.9 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I P++C  C +C   CP DAIK
Sbjct: 563 FYIDPEKCKACMICARNCPTDAIK 586


>gi|238755292|ref|ZP_04616636.1| Formate hydrogenlyase subunit 2 [Yersinia ruckeri ATCC 29473]
 gi|238706526|gb|EEP98899.1| Formate hydrogenlyase subunit 2 [Yersinia ruckeri ATCC 29473]
          Length = 198

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C +VCPV+      N + ++ + C+ C +C   CP  AI
Sbjct: 57  CHQCEDAPCAQVCPVNAITHENNAIHLNENLCVSCKLCGIACPFGAI 103


>gi|171680662|ref|XP_001905276.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939958|emb|CAP65184.1| unnamed protein product [Podospora anserina S mat+]
          Length = 220

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 119 ERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 176

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 177 ESP----------NAEYATE 186



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 100 PISPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERAD 145


>gi|170683856|ref|YP_001745039.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           SMS-3-5]
 gi|170521574|gb|ACB19752.1| protein aegA [Escherichia coli SMS-3-5]
          Length = 644

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   C    ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQPDSVQLDEQKCIGCKRCAIACSFGVVEMVDTIAQK 116


>gi|170682806|ref|YP_001743584.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
 gi|170520524|gb|ACB18702.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
          Length = 239

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 633

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           TY +  + C  C    C + CP +    E +    I  D CI CG+CE  C  +A+
Sbjct: 577 TYSIDPDACTGCG--ACAKQCPNNAITGEKKEPHTIDTDACIRCGICEETCKFNAV 630



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +I PD C  CG C  +CP +AI  + +   
Sbjct: 578 YSIDPDACTGCGACAKQCPNNAITGEKKEPH 608


>gi|156937394|ref|YP_001435190.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ignicoccus hospitalis KIN4/I]
 gi|156566378|gb|ABU81783.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Ignicoccus
           hospitalis KIN4/I]
          Length = 505

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           T  C       C  VCP +     E  ++I PD+C  CG+C   CP
Sbjct: 119 TFACASPSCRMCKSVCPSNAIRLKEGRVSIDPDKCTSCGLCVAACP 164



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 16/67 (23%)

Query: 1   MTY-------VVTEN--CILCKHTDCVEVCPVDCF---YEGENFLAIH--PDECIDCGVC 46
           M Y       VV     C  C  T C E CP             + +   P  C+ C  C
Sbjct: 268 MAYSLEDFYEVVVNPKLCDAC--TACSEACPTRSLVLRTPTPAMVILTHLPAACVGCHAC 325

Query: 47  EPECPVD 53
              CPV 
Sbjct: 326 VRACPVQ 332


>gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 628

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ E C  C  T C  +CPV     E +   +I   +CI CG C+  C   AI  +
Sbjct: 575 IIPELCKGC--TKCARLCPVSAISGEVKKLHSIDTKKCIKCGACKDSCGFKAIIEE 628



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           L I P+ C  C  C   CPV AI  + +
Sbjct: 573 LKIIPELCKGCTKCARLCPVSAISGEVK 600


>gi|78189898|ref|YP_380236.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
 gi|78172097|gb|ABB29193.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium chlorochromatii CaD3]
          Length = 253

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CP    +   + +  +    CI C  C   CP  AI  + +  
Sbjct: 115 CNHCAKAPCVTACPTSAIFRRYDGIVGLDFHRCIGCRACMTACPYSAISFNWKAP 169


>gi|310827326|ref|YP_003959683.1| hypothetical protein ELI_1734 [Eubacterium limosum KIST612]
 gi|308739060|gb|ADO36720.1| hypothetical protein ELI_1734 [Eubacterium limosum KIST612]
          Length = 223

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +T+ CI C    C E+C  D   EGE    I+ + C +CG C   CPV+AI
Sbjct: 171 TITDACISCG--KCTELCYFDAVEEGEP-YKINGNRCDECGNCYHHCPVNAI 219


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+  E C  C  T C +VCP        +    I  ++C+ CG C   C   AI
Sbjct: 542 YVIDPEKCKGC--TLCAKVCPAGAVTGKLKEAHVIDQEKCVKCGACFSACKFGAI 594



 Score = 40.9 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I P++C  C +C   CP  A+
Sbjct: 541 QYVIDPEKCKGCTLCAKVCPAGAV 564


>gi|219851494|ref|YP_002465926.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219545753|gb|ACL16203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 203

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C++VCP +  Y       +AIH + CIDC VC   CP   I+      ++L 
Sbjct: 59  CRHCDPAPCMQVCPTEALYRDLSTGSVAIHYNRCIDCAVCAMACPFGVIRFQRVRQVDLP 118

Query: 67  LKINSE 72
             +N++
Sbjct: 119 RDVNAK 124


>gi|71733335|ref|YP_275286.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257485447|ref|ZP_05639488.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625433|ref|ZP_06458387.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649284|ref|ZP_06480627.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679207|ref|ZP_06500097.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487555|ref|ZP_07005597.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185030|ref|ZP_07261703.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           642]
 gi|110287765|sp|Q48H47|NUOI_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71553888|gb|AAZ33099.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157939|gb|EFH99017.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323795|gb|EFW79879.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327934|gb|EFW83939.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866831|gb|EGH01540.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330881176|gb|EGH15325.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330900634|gb|EGH32053.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330954556|gb|EGH54816.1| NADH dehydrogenase subunit I [Pseudomonas syringae Cit 7]
 gi|330981363|gb|EGH79466.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aptata str.
           DSM 50252]
 gi|330987949|gb|EGH86052.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010720|gb|EGH90776.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 182

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMADF 127


>gi|66524760|ref|XP_623480.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial isoform 2 [Apis mellifera]
          Length = 201

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 100 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 156



 Score = 37.4 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 100 ERCIACKLCEAICPAQAITIEAEERAD 126



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 141 CIYCGF--CQEACPVDAIVEGPNF 162


>gi|30063184|ref|NP_837355.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|30041436|gb|AAP17164.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
          Length = 239

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 153


>gi|302348411|ref|YP_003816049.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Acidilobus saccharovorans 345-15]
 gi|302328823|gb|ADL19018.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Acidilobus saccharovorans 345-15]
          Length = 633

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++ C  C        CP   F + +    I P  C  CGVC   CP  AI
Sbjct: 566 YQVEDDKCTACGICYNAFSCPA-IFVKDDRKAWIDPSLCTGCGVCAEICPYKAI 618


>gi|240102306|ref|YP_002958614.1| formate dehydrogenase I subunit B (fdh1B) [Thermococcus
          gammatolerans EJ3]
 gi|239909859|gb|ACS32750.1| formate dehydrogenase I subunit B (fdh1B) [Thermococcus
          gammatolerans EJ3]
          Length = 165

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          + V  NC  C+   C+ VCP    +  ++      P +CI C +C   CP    K D E
Sbjct: 40 FTVPFNCRHCEKAPCLNVCPTGALFRDKDGAVAFDPLKCIGCLMCAVACPFGVPKLDEE 98


>gi|159905359|ref|YP_001549021.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886852|gb|ABX01789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 658

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E     G                  I  D CIDCG
Sbjct: 240 YVDDDTCTGCG--ACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKDHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN 70
           +C   C  +A++ D +P     LK+N
Sbjct: 298 LCAKVCCAEAVRYDQKPQE---LKLN 320



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPD--ECIDCGVCEPECPVDA 54
             V  E C  CK   C  +CP +     E +  L    D   C  CG C   CP  A
Sbjct: 577 ATVNEEVCGGCKV--CALMCPYNAITYEEKDGHLVAITDDVACKGCGACAAACPSGA 631


>gi|145616212|ref|XP_360940.2| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
 gi|145009964|gb|EDJ94620.1| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
          Length = 229

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E  +          I   +CI CG C+  CPVDAI 
Sbjct: 128 ERCIACKL--CEAVCPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 185

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 186 ESP----------NAEYATE 195



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E  ++
Sbjct: 109 PISPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERMD 154


>gi|150019924|ref|YP_001305278.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
 gi|149792445|gb|ABR29893.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
          Length = 282

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  V  + CI C   +C   C         N   +  + C  CG C   CPV+AIK 
Sbjct: 61  LPVVDNDKCIKCG--ECSRACQFGAISVFPNSTVVFKNLCHGCGACTMVCPVNAIKE 115


>gi|158321169|ref|YP_001513676.1| hypothetical protein Clos_2144 [Alkaliphilus oremlandii OhILAs]
 gi|158141368|gb|ABW19680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Alkaliphilus
           oremlandii OhILAs]
          Length = 220

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C  C++  C   CPVD     E +    +   +CI CGVC+  CP      D E 
Sbjct: 123 ETCKQCENPKCASACPVDAISLNERWGAWMVDESKCIGCGVCKRACPWGMPTVDPED 179


>gi|91200370|emb|CAJ73416.1| strongly similar to NADH dehydrogenase I chain I [Candidatus
           Kuenenia stuttgartiensis]
          Length = 171

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C  VCPVDC                F  I+   CI CG CE  CP  AI
Sbjct: 48  GERCVGCYL--CAAVCPVDCISLQATEDEYGRRYPEFFRINFSRCIFCGFCEDACPTYAI 105

Query: 56  K 56
           +
Sbjct: 106 Q 106


>gi|297570515|ref|YP_003691859.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926430|gb|ADH87240.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 682

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C+ C   +CV +CP       E    I+ + C+ CG+C   CP  AIK
Sbjct: 486 ARVTADRCVKCL--NCVRLCPYQAPRI-EQVALINRERCLACGICHGACPTGAIK 537


>gi|268679825|ref|YP_003304256.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617856|gb|ACZ12221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 154

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C+ C+   C+ +CP       E F+ +    C+ CG C   CP  AI    E      LK
Sbjct: 60  CMHCETPSCLAICPHGVISLEEGFIKLDETACVGCGCCALACPYGAISMVKEDERVYALK 119

Query: 69  IN 70
            N
Sbjct: 120 CN 121


>gi|294102605|ref|YP_003554463.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aminobacterium colombiense DSM 12261]
 gi|293617585|gb|ADE57739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Aminobacterium colombiense DSM 12261]
          Length = 57

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + C+ C+   CV  CPV+     +    +  D CI+CG C   CPV+AI
Sbjct: 4  AVVDKDACVGCE--TCVGACPVEAISMVDGKAEVDADTCIECGSCVSVCPVNAI 55


>gi|283785099|ref|YP_003364964.1| oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
 gi|282948553|emb|CBG88143.1| putative oxidoreductase Fe-S subunit [Citrobacter rodentium ICC168]
          Length = 208

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           + C  CK   C++VCP++       E  + +    CI C  C   CP
Sbjct: 121 DTCRQCKDPQCMKVCPIEAIRWQPEEGCIVVDHKRCIGCSACTTACP 167


>gi|270669404|ref|ZP_06222601.1| Electron transport complex protein rnfB [Haemophilus influenzae
           HK1212]
 gi|270316570|gb|EFA28404.1| Electron transport complex protein rnfB [Haemophilus influenzae
           HK1212]
          Length = 180

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP D I
Sbjct: 95  AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTDCI 147



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E    I  + CI C  C   CPVDAI
Sbjct: 92  EKVAFIDENMCIGCTKCIQACPVDAI 117


>gi|268323322|emb|CBH36910.1| heterodisulfide reductase subunit A [uncultured archaeon]
          Length = 668

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    C  +CP D        + ++   C  CG C   CP  AI      
Sbjct: 595 AFVDEGVCVGCG--TCEAICPFDALSLEAGVMHVNEVVCKGCGSCRSACPSGAITMRHFK 652

Query: 62  GLELWLKINS 71
             +++ +I +
Sbjct: 653 DEQIYAQIEA 662


>gi|126459993|ref|YP_001056271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249714|gb|ABO08805.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 369

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C LC    CV VCP D     E  L I P  CI CG+C  +CP   ++    P   
Sbjct: 255 VLQGCTLCG--ACVNVCPTDALSLREFELRIVPALCIGCGLCAEKCPEGVMRVSESPSPA 312

Query: 65  LW 66
            +
Sbjct: 313 PY 314



 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           VV ++  CI C    C + CP       E     +    C DCG+C   CPV+AI+  + 
Sbjct: 80  VVADSGKCIWCG--ICAKACPFSAVKYAERKYVEVDYGLCADCGLCNAVCPVEAIQMPSL 137

Query: 61  PG 62
           P 
Sbjct: 138 PD 139


>gi|297578622|ref|ZP_06940550.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536216|gb|EFH75049.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 195

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|150389144|ref|YP_001319193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149949006|gb|ABR47534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 358

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          K   C+E+CPV+   + E  + I  + C  CG+C   CP  A++
Sbjct: 32 KCRKCIEICPVEAIKQKETIIVIDKNSCNGCGICNVVCPSQALE 75



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
           V  NC  C    C  +CP +     E E+ L I      C  C +C   CP  AI+
Sbjct: 253 VNLNCDGCSF--CQAICPWNSWQIEENEDQLVIKHSARTCRSCELCFKLCPNKAIE 306


>gi|320161224|ref|YP_004174448.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
 gi|319995077|dbj|BAJ63848.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
          Length = 203

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 9   CILCKHTDCVEVCPVDCF-------------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C +VCP  C                      I  D C++CG+C   CP DAI
Sbjct: 85  CTSCG--ICAKVCPPQCIWIVRTTDPNTGKPIPAPAEFYIDVDICMNCGLCAEYCPFDAI 142

Query: 56  KPDTEPGLELW 66
           K D +  +  +
Sbjct: 143 KMDHDYEIASY 153


>gi|319787565|ref|YP_004147040.1| electron transport complex, RnfABCDGE type subunit beta
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466077|gb|ADV27809.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 141

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
             V+  +CI C  T C++ CPVD    G     + + P  C  C +C P CPVD I  + 
Sbjct: 81  AVVIEADCIGC--TKCIQACPVDAIIGGAKLMHVVLDP-LCTGCELCVPACPVDCIVMEP 137

Query: 60  EPGL 63
            P  
Sbjct: 138 APAA 141


>gi|317489733|ref|ZP_07948235.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911167|gb|EFV32774.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 221

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C   +CV+VCP    ++ E+    I   +CI C  C   CP +    + E 
Sbjct: 58  YYLPVQCQHCADPECVKVCPTGASHKLEDGTVQIDKAKCIGCQFCAMSCPYNVRYLNEEE 117

Query: 62  G 62
           G
Sbjct: 118 G 118


>gi|307728378|ref|YP_003905602.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1003]
 gi|323524668|ref|YP_004226821.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1001]
 gi|307582913|gb|ADN56311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1003]
 gi|323381670|gb|ADX53761.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Burkholderia sp. CCGE1001]
          Length = 85

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEP 61
          I  D E 
Sbjct: 59 IPRDPEH 65


>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 623

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C  C  + C  +CPV    EG+      ++  +CI CG C   CP  AIK 
Sbjct: 573 EKCKGC--SKCARICPVQAI-EGKIKEPYTVNQSKCIKCGACLEVCPFAAIKE 622



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
           + I  ++C  C  C   CPV AI+
Sbjct: 568 IVIEKEKCKGCSKCARICPVQAIE 591


>gi|24113059|ref|NP_707569.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|24052030|gb|AAN43276.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
          Length = 239

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 153


>gi|73982757|ref|XP_851642.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) isoform 1 [Canis familiaris]
          Length = 216

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 119 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 175



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 119 ERCIACKLCEAVCPAQAITIEAEPRAD 145



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 160 CIYCGF--CQEACPVDAIVEGPNF 181


>gi|28210729|ref|NP_781673.1| ferredoxin [Clostridium tetani E88]
 gi|28203167|gb|AAO35610.1| rnfB/polyferredoxin [Clostridium tetani E88]
          Length = 290

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C   CPV+     +N   I+ D+C+ CG+C  +CP  AI
Sbjct: 218 CISCGL--CARNCPVEAIEMVDNLPVINYDKCVQCGICVKKCPTKAI 262



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             C +VC  D     +    I  ++C  CG C   CP  A+   T    ++ +  N
Sbjct: 148 GSCTQVCLFDAITIEDGIAVIDEEKCTGCGACVDICP-KAVIELTPMSKKVRIACN 202



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--------------NFLAIHPDE--CIDCGVCEPEC 50
           E C  C    CV++CP                           +     CI CG+C   C
Sbjct: 171 EKCTGCG--ACVDICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNC 228

Query: 51  PVDAIKPDTEPGLELW 66
           PV+AI+      +  +
Sbjct: 229 PVEAIEMVDNLPVINY 244


>gi|15641031|ref|NP_230662.1| electron transport complex protein RnfB [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587394|ref|ZP_01677164.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121729983|ref|ZP_01682400.1| RnfB-related protein [Vibrio cholerae V52]
 gi|147674952|ref|YP_001216488.1| electron transport complex protein RnfB [Vibrio cholerae O395]
 gi|153215075|ref|ZP_01949792.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|153800913|ref|ZP_01955499.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|153819293|ref|ZP_01971960.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|153823433|ref|ZP_01976100.1| RnfB-related protein [Vibrio cholerae B33]
 gi|153824911|ref|ZP_01977578.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|153829521|ref|ZP_01982188.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|227081190|ref|YP_002809741.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|229505385|ref|ZP_04394895.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229510945|ref|ZP_04400424.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229515402|ref|ZP_04404861.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229518066|ref|ZP_04407510.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229529891|ref|ZP_04419281.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229608404|ref|YP_002879052.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254291761|ref|ZP_04962547.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|254848146|ref|ZP_05237496.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255745441|ref|ZP_05419389.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262151307|ref|ZP_06028442.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262167227|ref|ZP_06034939.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262191541|ref|ZP_06049724.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|298498871|ref|ZP_07008678.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|17369129|sp|Q9KT87|RNFB_VIBCH RecName: Full=Electron transport complex protein rnfB
 gi|172047411|sp|A5F2R3|RNFB_VIBC3 RecName: Full=Electron transport complex protein rnfB
 gi|254807927|sp|C3LTR4|RNFB_VIBCM RecName: Full=Electron transport complex protein rnfB
 gi|9655480|gb|AAF94177.1| RnfB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548397|gb|EAX58459.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121628269|gb|EAX60782.1| RnfB-related protein [Vibrio cholerae V52]
 gi|124114938|gb|EAY33758.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|124123504|gb|EAY42247.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|126510153|gb|EAZ72747.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|126519042|gb|EAZ76265.1| RnfB-related protein [Vibrio cholerae B33]
 gi|146316835|gb|ABQ21374.1| RnfB-related protein [Vibrio cholerae O395]
 gi|148874981|gb|EDL73116.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|149741423|gb|EDM55453.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|150422354|gb|EDN14315.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|227009078|gb|ACP05290.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|227012833|gb|ACP09043.1| RnfB-related protein [Vibrio cholerae O395]
 gi|229333665|gb|EEN99151.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229344781|gb|EEO09755.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229347171|gb|EEO12131.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229350910|gb|EEO15851.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229357608|gb|EEO22525.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229371059|gb|ACQ61482.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254843851|gb|EET22265.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255736516|gb|EET91913.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262024371|gb|EEY43060.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262030923|gb|EEY49552.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262032595|gb|EEY51150.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|297543204|gb|EFH79254.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327483732|gb|AEA78139.1| Electron transport complex protein RnfB [Vibrio cholerae LMA3894-4]
          Length = 195

 Score = 52.8 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
 gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
          Length = 594

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           Y +T+ C+ C  T C   CPV           I   E CI CG+C   C   AI
Sbjct: 540 YRITDKCVGC--TLCARNCPVHAIVGTVKKQHIISQELCIKCGICYDRCKFGAI 591


>gi|217419601|ref|ZP_03451107.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 576]
 gi|217396905|gb|EEC36921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 576]
          Length = 290

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|170691508|ref|ZP_02882673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia graminis C4D1M]
 gi|170143713|gb|EDT11876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia graminis C4D1M]
          Length = 85

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEP 61
          I  D E 
Sbjct: 59 IPRDPEH 65


>gi|195940382|ref|ZP_03085764.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           EC4024]
 gi|209396610|ref|YP_002270739.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209158010|gb|ACI35443.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209769272|gb|ACI82948.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769276|gb|ACI82950.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
          Length = 239

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|146309206|ref|YP_001189671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas mendocina ymp]
 gi|330505428|ref|YP_004382297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas mendocina NK-01]
 gi|145577407|gb|ABP86939.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pseudomonas mendocina ymp]
 gi|328919714|gb|AEB60545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas mendocina NK-01]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTE 60
          I  D  
Sbjct: 59 IPLDEN 64


>gi|110805647|ref|YP_689167.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|170019979|ref|YP_001724933.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|209918984|ref|YP_002293068.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|218554237|ref|YP_002387150.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI1]
 gi|218695232|ref|YP_002402899.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli 55989]
 gi|307310758|ref|ZP_07590404.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|110615195|gb|ABF03862.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|169754907|gb|ACA77606.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|209912243|dbj|BAG77317.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|218351964|emb|CAU97696.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli 55989]
 gi|218361005|emb|CAQ98579.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI1]
 gi|306908936|gb|EFN39432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|315060976|gb|ADT75303.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli W]
 gi|323378452|gb|ADX50720.1| putative oxidoreductase, Fe-S subunit [Escherichia coli KO11]
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|53718739|ref|YP_107725.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|134281040|ref|ZP_01767749.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 305]
 gi|237811474|ref|YP_002895925.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           pseudomallei MSHR346]
 gi|52209153|emb|CAH35097.1| putative electron transport-related protein [Burkholderia
           pseudomallei K96243]
 gi|134247346|gb|EBA47431.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 305]
 gi|237505183|gb|ACQ97501.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 290

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|121605275|ref|YP_982604.1| RnfABCDGE type electron transport complex subunit B [Polaromonas
           naphthalenivorans CJ2]
 gi|120594244|gb|ABM37683.1| electron transport complex, RnfABCDGE type, B subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 231

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD----TEPG 62
           CI C  T C++ CP D            I P  C  C +C P CPVD I  +    T  G
Sbjct: 97  CIGC--TLCIKACPTDAIIGSNKLMHTVIEP-YCTGCELCIPACPVDCISLENLTGTHTG 153

Query: 63  LELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
              W   ++E A +       + +  ++AK     +K ++  S  P   
Sbjct: 154 WNAWSPQDAETARKRYESHRMQHTHDNSAK----PEKLQEKVSATPAKP 198



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 28  EGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           E    +AI  +  CI C +C   CP DAI
Sbjct: 84  EAPRAVAIIDEAWCIGCTLCIKACPTDAI 112


>gi|254298437|ref|ZP_04965889.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 406e]
 gi|157808125|gb|EDO85295.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 406e]
          Length = 281

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|331673230|ref|ZP_08373998.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA280]
 gi|331069428|gb|EGI40815.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA280]
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|326202709|ref|ZP_08192577.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
 gi|325987293|gb|EGD48121.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
          Length = 414

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAI 55
           Y+    C+ C    C++ CPVDC      ++ +  D +C  CG C   C   AI
Sbjct: 340 YINAAKCVGCG--ICIKSCPVDCIEGLPGYIHMIEDIDCTKCGKCIEVCEAGAI 391



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
           + I+  +C+ CG+C   CPVD I+
Sbjct: 339 VYINAAKCVGCGICIKSCPVDCIE 362


>gi|304312861|ref|YP_003812459.1| hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
 gi|301798594|emb|CBL46824.1| Hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
          Length = 296

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +  D+C  C +C   CPVD I
Sbjct: 91  DECIGC--TKCIQACPVDAILGAAQLMHTVIGDQCTGCNLCVEPCPVDCI 138



 Score = 40.1 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  DECI C  C   CPVDAI
Sbjct: 87  VIREDECIGCTKCIQACPVDAI 108



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    CVE CPVDC 
Sbjct: 115 MHTVIGDQCTGCNL--CVEPCPVDCI 138


>gi|300939008|ref|ZP_07153705.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 21-1]
 gi|300456078|gb|EFK19571.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 21-1]
          Length = 239

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|298370606|ref|ZP_06981921.1| ferredoxin [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281216|gb|EFI22706.1| ferredoxin [Neisseria sp. oral taxon 014 str. F0314]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPETH 69


>gi|284161787|ref|YP_003400410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011784|gb|ADB57737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 557

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + +NC LC    C+  CP++   + +  +  +   CI C +C   CP  AI+ +     
Sbjct: 426 INDNCTLCN--ACMNFCPMEAIKKEDGKILFNHALCIACEMCAKACPEKAIEVEKALDF 482


>gi|225572306|ref|ZP_03781170.1| hypothetical protein RUMHYD_00600 [Blautia hydrogenotrophica DSM
          10507]
 gi|225040188|gb|EEG50434.1| hypothetical protein RUMHYD_00600 [Blautia hydrogenotrophica DSM
          10507]
          Length = 56

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M +V+T+ C+ C    C   CP     E E    I+  +C+ CG C   CP  AI
Sbjct: 1  MAFVITDRCVKCG--ACESECPNKAIVEEEKKFCINYRKCLQCGNCIDVCPNKAI 53


>gi|225075481|ref|ZP_03718680.1| hypothetical protein NEIFLAOT_00486 [Neisseria flavescens
          NRL30031/H210]
 gi|241760438|ref|ZP_04758532.1| ferredoxin [Neisseria flavescens SK114]
 gi|261364710|ref|ZP_05977593.1| ferredoxin [Neisseria mucosa ATCC 25996]
 gi|261380556|ref|ZP_05985129.1| hypothetical protein NEISUBOT_04575 [Neisseria subflava NJ9703]
 gi|224953200|gb|EEG34409.1| hypothetical protein NEIFLAOT_00486 [Neisseria flavescens
          NRL30031/H210]
 gi|241319107|gb|EER55600.1| ferredoxin [Neisseria flavescens SK114]
 gi|284796524|gb|EFC51871.1| ferredoxin [Neisseria subflava NJ9703]
 gi|288567006|gb|EFC88566.1| ferredoxin [Neisseria mucosa ATCC 25996]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPETH 69


>gi|218705169|ref|YP_002412688.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli UMN026]
 gi|293405169|ref|ZP_06649161.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1412]
 gi|298380812|ref|ZP_06990411.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1302]
 gi|218432266|emb|CAR13156.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli UMN026]
 gi|291427377|gb|EFF00404.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1412]
 gi|298278254|gb|EFI19768.1| ferredoxin-like protein ydhX [Escherichia coli FVEC1302]
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|182417534|ref|ZP_02948861.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237665714|ref|ZP_04525702.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378703|gb|EDT76230.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237658661|gb|EEP56213.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 298

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    CV  CP       ++ + I  ++C  C  C   CP  A++ + E
Sbjct: 55  CIHCL--SCVNSCPSQAIQHQDDKIIIDHEKCTGCLTCANICPQKALENEGE 104


>gi|167585418|ref|ZP_02377806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Burkholderia ubonensis Bu]
          Length = 89

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPRDPQHAETH 69


>gi|91778366|ref|YP_553574.1| iron-sulfur cluster-binding protein [Burkholderia xenovorans LB400]
 gi|91691026|gb|ABE34224.1| iron-sulfur cluster-binding protein [Burkholderia xenovorans LB400]
          Length = 251

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGLVLVDFDRCIGCKYCAWACPYGARELDE 125


>gi|71909336|ref|YP_286923.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
          RCB]
 gi|71848957|gb|AAZ48453.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
          aromatica RCB]
          Length = 85

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +   +GE    I P++C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNEAISQGEEVYVIDPNKCTECVGHYDEPQCVQVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|77459832|ref|YP_349339.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1]
 gi|110287767|sp|Q3KA56|NUOI_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77383835|gb|ABA75348.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|113461203|ref|YP_719272.1| electron transport complex protein RnfB [Haemophilus somnus 129PT]
 gi|112823246|gb|ABI25335.1| electron transport complex protein [Haemophilus somnus 129PT]
          Length = 196

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  D C  C +C   CP D I
Sbjct: 106 AFIDEDMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTDCI 158



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 12/26 (46%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
                I  D CI C  C   CPVDAI
Sbjct: 103 PKVAFIDEDMCIGCTKCIQACPVDAI 128


>gi|331683178|ref|ZP_08383779.1| putative oxidoreductase Fe-S subunit [Escherichia coli H299]
 gi|331079393|gb|EGI50590.1| putative oxidoreductase Fe-S subunit [Escherichia coli H299]
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|304314067|ref|YP_003849214.1| carbon monoxide dehydrogenase, iron sulfur subunit
          [Methanothermobacter marburgensis str. Marburg]
 gi|302587526|gb|ADL57901.1| carbon monoxide dehydrogenase, iron sulfur subunit
          [Methanothermobacter marburgensis str. Marburg]
          Length = 154

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C+ C  +   C  +CPV    E +  L I  D CI C +C   CP   I  D+E
Sbjct: 39 CLQCHPEKAPCARICPVGAIREVDGALVIDEDACILCKLCMVACPAGMIVLDSE 92


>gi|219852155|ref|YP_002466587.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
 gi|219546414|gb|ACL16864.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
          Length = 289

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T  C  C    CVE C             +  D C+ CG+C   CP + IK
Sbjct: 161 ITGICTGCG--SCVEYCREGAIRIKNGISVLDLDTCVQCGICVKSCPFNVIK 210


>gi|325294577|ref|YP_004281091.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065025|gb|ADY73032.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 765

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 20/74 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           + CI C   +C +VCPV+   E                    +   I    CI CG CE 
Sbjct: 245 DKCIACG--ECEKVCPVEVPNEFNLGKTKRKAIYKPFPLAIPDVYHIDEAACIFCGECEK 302

Query: 49  ECPVDAIKPDTEPG 62
            CP  AI    E  
Sbjct: 303 VCPTQAINLQAESE 316



 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C+   C+  CP             +N++ I P+ C  CG+C   CP  AI     
Sbjct: 555 DKCSRCE--TCLMCCPHGAISVKKGKTPEDNWIEIDPNLCRGCGLCYAACPSKAINFSNL 612

Query: 61  PGLE 64
              +
Sbjct: 613 EDEQ 616



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 35  IHPDECIDCGVCEPECPVD 53
           I+PD+CI CG CE  CPV+
Sbjct: 242 INPDKCIACGECEKVCPVE 260


>gi|320591509|gb|EFX03948.1| NADH-quinone oxidoreductase [Grosmannia clavigera kw1407]
          Length = 243

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 142 ERCIACKL--CEAICPAQAITIEAEERADGSRRTSRYDIDMTKCIYCGFCQESCPVDAIV 199

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 200 ESP----------NAEYATE 209


>gi|295675400|ref|YP_003603924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1002]
 gi|295435243|gb|ADG14413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. CCGE1002]
          Length = 85

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEPGL 63
          I  D     
Sbjct: 59 IPRDPNHPE 67


>gi|146276820|ref|YP_001166979.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555061|gb|ABP69674.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 237

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C  C+   CV VCP        + +  I    C+ CG+C   CP  A + D
Sbjct: 77  CQHCEDPPCVPVCPTGASQLRPDGVVAIDDARCLGCGLCAWACPYGARELD 127


>gi|331000330|ref|ZP_08324011.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329572126|gb|EGG53791.1| putative formate dehydrogenase, beta subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 321

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C+ + C E CP       E   +    D C+ CG+C   CP    +
Sbjct: 145 SDQCKHCRTSPCHEACPTGAIVRNEFGGVYYQTDICMGCGMCVAACPFGVPE 196


>gi|325267342|ref|ZP_08134004.1| ferredoxin [Kingella denitrificans ATCC 33394]
 gi|324981279|gb|EGC16929.1| ferredoxin [Kingella denitrificans ATCC 33394]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPESH 69


>gi|315126995|ref|YP_004068998.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
 gi|315015509|gb|ADT68847.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
          Length = 184

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGATRQMHTVLIDECTGCDLCVEPCPVDCI 159


>gi|302391758|ref|YP_003827578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203835|gb|ADL12513.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 178

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C  VCP         E+ + I  D+CI C +C   CP   I+
Sbjct: 60  CRHCDDAPCETVCPTGAIGRENSESPVVIEKDKCIGCKMCLQVCPFGVIE 109


>gi|301062088|ref|ZP_07202789.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
 gi|300443814|gb|EFK07878.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
          Length = 1394

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 4    VVT-----ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            VVT     E C  C    CV  CP +      +    I P  C  CG+C  ECP   I+ 
Sbjct: 1317 VVTASVDQEKCAACLV--CVRSCPYNVPKINADGVSEIDPALCRGCGICVSECPAKVIQL 1374

Query: 58   DTEPGLELWLKINS 71
                  ++  K+ +
Sbjct: 1375 GWYEDDQVMSKVEA 1388



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
           I   +C  CG C   CPV A+  + + G+        +YA   P+
Sbjct: 18 FIDESKCTACGDCTDVCPV-ALPNEYDQGMSQKRATFKKYAQAIPS 62


>gi|269121726|ref|YP_003309903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
 gi|268615604|gb|ACZ09972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
          Length = 261

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            E C  C    C + CPV      EN      ++CI C  C   CPV A   D E     
Sbjct: 187 GEACYDC--MKCAKECPVSAISF-ENPRIADANKCIHCCACVKACPVKAKYFDNEMMKNF 243

Query: 66  WLKINSEYATQWPNI 80
            + + +++A +  NI
Sbjct: 244 SVMLETKFAEKKENI 258


>gi|268591834|ref|ZP_06126055.1| cytochrome c nitrite reductase, Fe-S protein [Providencia rettgeri
           DSM 1131]
 gi|291312803|gb|EFE53256.1| cytochrome c nitrite reductase, Fe-S protein [Providencia rettgeri
           DSM 1131]
          Length = 223

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+   CV+VCP       +    + ++PD C+ C  C   CP 
Sbjct: 91  SCQHCESAPCVDVCPTGASFIDKTTGIVDVNPDLCVGCQYCIAACPY 137


>gi|206889752|ref|YP_002248980.1| NrfC protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741690|gb|ACI20747.1| NrfC protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 185

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C+   C++ CP    +  ++    I   +CI C  C   CP DA
Sbjct: 55  SELCNHCEEAPCIDACPTRASHRAKDGTVQIDRKKCIGCKACILACPYDA 104


>gi|218778106|ref|YP_002429424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759490|gb|ACL01956.1| Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1012

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 25/82 (30%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEG---------------ENFLAIHPDECID-- 42
           YV TE CI C    C   CP    D + +G                   AI P++C+   
Sbjct: 103 YVDTEKCIACGQ--CAAKCPKKVTDEYNQGLIKRKAIYVPYPQAVPLKFAIDPEQCLKLT 160

Query: 43  ---CGVCEPECPVDAIKPDTEP 61
              CG CE  CP  AI  D + 
Sbjct: 161 KDKCGNCEKVCPAGAILYDDKE 182



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 9   CILCKHTDCVEVCPVDC---FYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    CV  CP        EG N     I+P  C  CG C   C   A+ 
Sbjct: 943 CSSC--MVCVSTCPYSAPSMVKEGPNAGKAEINPVLCKGCGQCVASCRSGALH 993


>gi|167629546|ref|YP_001680045.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein, putative
          [Heliobacterium modesticaldum Ice1]
 gi|119675286|gb|ABL89192.1| ferredoxin-like protein [Heliobacterium modesticaldum]
 gi|167592286|gb|ABZ84034.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein, putative
          [Heliobacterium modesticaldum Ice1]
          Length = 54

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M Y +++ C+ C    C + CPV+   +G+  +    D CIDCG C   CP  AI
Sbjct: 1  MVYKISDACVACG--ACEDACPVNAIIKGD--VYSITDACIDCGTCADTCPAGAI 51


>gi|91210884|ref|YP_540870.1| putative oxidoreductase Fe-S subunit [Escherichia coli UTI89]
 gi|117623852|ref|YP_852765.1| putative oxidoreductase Fe-S subunit [Escherichia coli APEC O1]
 gi|237705617|ref|ZP_04536098.1| iron-sulfur cluster-binding protein [Escherichia sp. 3_2_53FAA]
 gi|331657646|ref|ZP_08358608.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA206]
 gi|91072458|gb|ABE07339.1| putative oxidoreductase Fe-S subunit [Escherichia coli UTI89]
 gi|115512976|gb|ABJ01051.1| putative oxidoreductase Fe-S subunit [Escherichia coli APEC O1]
 gi|226900374|gb|EEH86633.1| iron-sulfur cluster-binding protein [Escherichia sp. 3_2_53FAA]
 gi|294493141|gb|ADE91897.1| iron-sulfur cluster-binding protein [Escherichia coli IHE3034]
 gi|307626843|gb|ADN71147.1| putative oxidoreductase Fe-S subunit [Escherichia coli UM146]
 gi|315286339|gb|EFU45775.1| putative thiosulfate reductase electron transport protein phsb
           [Escherichia coli MS 110-3]
 gi|331055894|gb|EGI27903.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA206]
          Length = 239

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|92115052|ref|YP_574980.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter
          salexigens DSM 3043]
 gi|91798142|gb|ABE60281.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
          salexigens DSM 3043]
          Length = 82

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISPGEEIYVIDPNLCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPDTE 60
          I  D E
Sbjct: 59 IPLDPE 64


>gi|58261400|ref|XP_568110.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115557|ref|XP_773492.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256118|gb|EAL18845.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230192|gb|AAW46593.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 273

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 134 ERCIACKL--CEAICPAQAITIESEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 190



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  ++E   +
Sbjct: 115 PLSARFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESEARED 160



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   E +N 
Sbjct: 175 CIYCGF--CQEACPVDAIVETQNQ 196


>gi|328908342|gb|EGG28101.1| anaerobic dimethyl sulfoxide reductase, chain B [Propionibacterium
           sp. P08]
          Length = 161

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           TY  + +C  C+    +EVCP       ++  + +  D+C+ C  CE  CP  A +
Sbjct: 106 TYYTSISCNHCEDPIYMEVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQ 161


>gi|329914674|ref|ZP_08276144.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545089|gb|EGF30386.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 547

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           I C  T C++VC  D      N + + P+ C+ CG C   CP  A
Sbjct: 169 IGC--TSCIDVCSADAIRHDGNLVKVVPNLCVGCGACTTVCPSGA 211



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           T  C LC    CV  CP     +  +   L      C+ CG+CE  CP +AI
Sbjct: 412 TSACTLC--MSCVGACPESALMDNADLPQLRFVEKNCVQCGLCETTCPENAI 461



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  + C  C  C   CP  AI
Sbjct: 43 IDLEICTRCNACVDACPEQAI 63



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           I+   C  C  C   CP  A+  + +     +++ N
Sbjct: 410 INTSACTLCMSCVGACPESALMDNADLPQLRFVEKN 445



 Score = 33.6 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTEPGLE 64
          E C  C    CV+ CP       +    I  ++C     C   C  + AI  +      
Sbjct: 46 EICTRCN--ACVDACPEQAI---DLMYQIDLNKCTSHSDCVKACGSIGAIDFNRTATQR 99


>gi|303257710|ref|ZP_07343722.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
 gi|302859680|gb|EFL82759.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderiales bacterium 1_1_47]
          Length = 192

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C++  CV+ CP    Y  EN L    PD+C+ C  C   CP DA
Sbjct: 67  CQQCENAPCVKTCPFGANYYDENGLVRNDPDKCVGCNYCIASCPYDA 113


>gi|295106095|emb|CBL03638.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Gordonibacter pamelaeae 7-10-1-b]
          Length = 382

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C + CP D     +N LA+  + C+ CG C   CP +A+ P      +L
Sbjct: 37 RKCTDACPTDAVGAKDNVLALDNERCVACGACTTVCPTEALIPLAPLDEDL 87



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-------EGEN-FLAIHPDECIDCGVCEPEC 50
           +V  E C  C    C   CP            EGE  FL     +C+ C +C   C
Sbjct: 288 HVDAEACSSCG--MCAVFCPTGALKKSDLVPEEGEGSFLEFSAADCVQCNLCADAC 341


>gi|288958539|ref|YP_003448880.1| nitrogen fixation protein [Azospirillum sp. B510]
 gi|288910847|dbj|BAI72336.1| nitrogen fixation protein [Azospirillum sp. B510]
          Length = 514

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV VCP      EG+         CI CG+C   C
Sbjct: 290 DCIDCKQ--CVHVCPTGTDIREGQQI------SCIGCGLCVDAC 325


>gi|281178741|dbj|BAI55071.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE15]
          Length = 239

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGVCPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNIT 81
           +      +  A  +P I 
Sbjct: 167 KCDFCAETRLAKGFPPIC 184


>gi|317152504|ref|YP_004120552.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942755|gb|ADU61806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 302

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           TYV  + C+ C+   CV  C      + EN       D+CI C  C   CP +    +  
Sbjct: 106 TYVKVQ-CMHCQDPACVSACITGALTKKENGTVHYDVDKCIGCRYCMAACPFEIPAYEYH 164

Query: 61  PG 62
             
Sbjct: 165 EP 166


>gi|218551401|ref|YP_002385193.1| anaerobic reductase chain B [Escherichia fergusonii ATCC 35469]
 gi|301648118|ref|ZP_07247877.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|218358943|emb|CAQ91603.1| putative anaerobic reductase chain B (DMSO reductase iron-sulfur
           subunit) [Escherichia fergusonii ATCC 35469]
 gi|301073785|gb|EFK88591.1| dimethylsulfoxide reductase, chain B [Escherichia coli MS 146-1]
 gi|324112272|gb|EGC06250.1| dimethylsulfoxide reductase [Escherichia fergusonii B253]
 gi|325499669|gb|EGC97528.1| anaerobic reductase chain B (DMSO reductase iron-sulfur subunit)
           [Escherichia fergusonii ECD227]
          Length = 208

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    +  E +  + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPTCVAGCPTGAMHKREEDGLVLVDDSVCVGCRYCEMRCPYGAPQFDT 118

Query: 60  EP 61
           + 
Sbjct: 119 QA 120


>gi|156975002|ref|YP_001445909.1| hypothetical protein VIBHAR_02724 [Vibrio harveyi ATCC BAA-1116]
 gi|156526596|gb|ABU71682.1| hypothetical protein VIBHAR_02724 [Vibrio harveyi ATCC BAA-1116]
          Length = 165

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
          E+C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 32 ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKEKCVGCGYCLAACPYQ 80


>gi|241661892|ref|YP_002980252.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ralstonia pickettii 12D]
 gi|240863919|gb|ACS61580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
          pickettii 12D]
          Length = 87

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPVD 
Sbjct: 1  MALIITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|77165396|ref|YP_343921.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrosococcus oceani ATCC
          19707]
 gi|254433504|ref|ZP_05047012.1| 4Fe-4S binding domain protein [Nitrosococcus oceani AFC27]
 gi|76883710|gb|ABA58391.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrosococcus
          oceani ATCC 19707]
 gi|207089837|gb|EDZ67108.1| 4Fe-4S binding domain protein [Nitrosococcus oceani AFC27]
          Length = 84

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I P  C +C        C   CPV+ 
Sbjct: 1  MALLITDECINCDV--CEPECPNGAISQGEEIYVIEPKLCTECVGHFETPQCVEVCPVEC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IIPD 62



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNGAISQGEE 29


>gi|109105179|ref|XP_001104103.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Macaca mulatta]
 gi|62287022|sp|Q60HE3|NDUS8_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|52782251|dbj|BAD51972.1| NADH dehydrogenase Fe-S protein 8 [Macaca fascicularis]
 gi|90076936|dbj|BAE88148.1| unnamed protein product [Macaca fascicularis]
          Length = 210

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAEPRAD 135



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|150019644|ref|YP_001311898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149906109|gb|ABR36942.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 368

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + C+ C    C + C        +    I+  +C+ CG C   CP+DA+ P ++   
Sbjct: 192 VYEDKCVGCG--MCAKNCAHSAISLTDKKALINHSKCVGCGRCIGICPMDAVMPASDESN 249

Query: 64  ELWLKINSEYATQWPNITTK 83
           ++  K  +EY+  W  +  +
Sbjct: 250 DILNKKIAEYS--WAVLNGR 267


>gi|148257236|ref|YP_001241821.1| putative 4Fe-4S ferredoxin, fixG-like protein [Bradyrhizobium sp.
           BTAi1]
 gi|146409409|gb|ABQ37915.1| Putative 4Fe-4S ferredoxin, fixG-like protein [Bradyrhizobium sp.
           BTAi1]
          Length = 495

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C    CV VCP+     +G NF       CI+CG+C   C     + D   GL  +
Sbjct: 290 DCVDCG--ACVAVCPIGIDIRQGPNF------ACINCGLCVDACDGVMARLDRPRGLIDY 341

Query: 67  LKINSEYATQWPNITTKKESLP 88
                     W NI   +   P
Sbjct: 342 --------ESWDNIERGRAGQP 355


>gi|325916606|ref|ZP_08178869.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537160|gb|EGD08893.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 139

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 134


>gi|325958954|ref|YP_004290420.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325330386|gb|ADZ09448.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 777

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 20/79 (25%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC------------------FYEGENFLAIHPDECIDC 43
           +YV+   CI C   +C EVCPV+                        +   I  + C  C
Sbjct: 247 SYVIKGKCISCG--NCAEVCPVEVSDSWNEDMTTRKAIFKPFPQAVPDVYTIDHENCKKC 304

Query: 44  GVCEPECPVDAIKPDTEPG 62
           G C+  C ++AI  D E  
Sbjct: 305 GKCQDVCRMNAIDLDMETE 323



 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    C LC    C+++C     +  EN L I P  C  CG C  EC  +AI    +   
Sbjct: 583 VDNSKCNLC--QKCIDICSFKAAFIQENVLKIDPIACNGCGACIAECETNAIDIIGQTDE 640

Query: 64  ELWLKINSEYATQWPN 79
           +L+  I+     + P+
Sbjct: 641 QLFAMIDGMLINKKPD 656


>gi|296241805|ref|YP_003649292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296094389|gb|ADG90340.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 169

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           +  +C+ C    C++VCP       +   + + P +CI C  C   CP    + D
Sbjct: 53  IPVSCLHCAKAPCIDVCPTGAMTRDKEGAVYVIPSKCIGCMACLYACPFGIPQLD 107


>gi|254884334|ref|ZP_05257044.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837127|gb|EET17436.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 394

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPV 52
          E+C  C  T C+  C  +     E+     F  I+ ++C++CG+C   CPV
Sbjct: 8  ESCTGC--TACMNSCSHNAIVMAEDAEGFIFPHINGNKCVECGLCMRVCPV 56


>gi|298529637|ref|ZP_07017040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511073|gb|EFI34976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 652

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C    C++VCP     E    G+    +    C  CG+C   CP  AI+       +
Sbjct: 584 CIGCG--KCIQVCPFGAVKEVDFRGQPKAEVIETVCQGCGICTATCPQGAIQLSHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 26/86 (30%), Gaps = 26/86 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
            YV  + C  C    C+E CP     D F E                     I PD C  
Sbjct: 235 AYVNWDLCTGCGL--CMEKCPAKKSTDYFNENLGKTTAINIPFPQAIPKKAVIDPDFCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPGL 63
                C VC   CP  AI  + +   
Sbjct: 293 FTKGKCSVCAKLCPTKAIDFEQQEEF 318


>gi|164663359|ref|XP_001732801.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
 gi|159106704|gb|EDP45587.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
          Length = 245

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 144 ERCIACKL--CEAICPALAITIESEPRMDGSRRTTRYDIDMTKCIYCGMCQEACPVDAI 200



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           PV   + GE+ L  +P   + CI C +CE  CP  AI  ++EP ++
Sbjct: 125 PVSPRFRGEHALRRYPTGEERCIACKLCEAICPALAITIESEPRMD 170


>gi|30064072|ref|NP_838243.1| electron transport protein HydN [Shigella flexneri 2a str. 2457T]
 gi|56480169|ref|NP_708520.2| electron transport protein HydN [Shigella flexneri 2a str. 301]
 gi|30042328|gb|AAP18053.1| 4Fe-4S iron-sulfur protein [Shigella flexneri 2a str. 2457T]
 gi|56383720|gb|AAN44227.2| 4Fe-4S iron-sulfur protein [Shigella flexneri 2a str. 301]
 gi|281602082|gb|ADA75066.1| 4Fe-4S iron-sulfur protein [Shigella flexneri 2002017]
 gi|313648193|gb|EFS12638.1| hydrogenase-4 component A [Shigella flexneri 2a str. 2457T]
 gi|332753430|gb|EGJ83810.1| hydrogenase-4 component A [Shigella flexneri 4343-70]
 gi|332753940|gb|EGJ84315.1| hydrogenase-4 component A [Shigella flexneri K-671]
 gi|332755674|gb|EGJ86037.1| hydrogenase-4 component A [Shigella flexneri 2747-71]
 gi|332765664|gb|EGJ95877.1| putative electron transport protein HydN [Shigella flexneri
           2930-71]
 gi|333000620|gb|EGK20197.1| hydrogenase-4 component A [Shigella flexneri K-218]
 gi|333015799|gb|EGK35135.1| hydrogenase-4 component A [Shigella flexneri K-304]
          Length = 175

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISRDKGFVPVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|313835401|gb|EFS73115.1| putative dimethylsulfoxide reductase, chain B [Propionibacterium
           acnes HL037PA2]
 gi|314929259|gb|EFS93090.1| putative dimethylsulfoxide reductase, chain B [Propionibacterium
           acnes HL044PA1]
 gi|314972422|gb|EFT16519.1| putative dimethylsulfoxide reductase, chain B [Propionibacterium
           acnes HL037PA3]
          Length = 160

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           TY  + +C  C+    +EVCP       ++  + +  D+C+ C  CE  CP  A +
Sbjct: 105 TYYTSISCNHCEDPIYMEVCPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQ 160


>gi|296116527|ref|ZP_06835137.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976739|gb|EFG83507.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
           23769]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP +          +G        I   +CI CG+CE  CPVDAI
Sbjct: 61  ERCIACKL--CEATCPAEAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP +AI  + EP  +
Sbjct: 61 ERCIACKLCEATCPAEAITIEAEPRDD 87



 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG N+
Sbjct: 102 CIYCGL--CEEACPVDAIVEGPNY 123


>gi|182889618|gb|AAI65418.1| Zgc:109991 protein [Danio rerio]
          Length = 210

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAETRADGNRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNFEY 173



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAE 131


>gi|158321164|ref|YP_001513671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158141363|gb|ABW19675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 362

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C  C+      +CP D        +++  + CI CG+C+  CP  AI+
Sbjct: 31 DPCTKCRD-----ICPKDAMLLNSGKISMDENLCIGCGLCKAVCPTQAIQ 75



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ + E C  C    C   CP   +     +G   L  H  +C  C  C   C   AI+ 
Sbjct: 251 TWRINEQCNGCGQ--CQSACPNKAWSLEKEDGTLKLYHHAGKCYQCRKCIESCSKKAIEG 308

Query: 58  DT 59
           D 
Sbjct: 309 DD 310


>gi|90578562|ref|ZP_01234372.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
 gi|90439395|gb|EAS64576.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
          Length = 551

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 6   TENCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           T +C LC    CV VCP        +    L I  D C+ CG+CE  CP   I  +    
Sbjct: 416 TTDCTLC--MSCVAVCPTRALHAIGDRPGLLFIEED-CVQCGMCEKACPEKVISLEPRFN 472

Query: 63  LEL 65
            + 
Sbjct: 473 WDW 475



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 17/47 (36%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C++ CP          +AI P  C   G C   CP +AI        
Sbjct: 193 CLDACPACALSSDGAEIAIDPYLCQGVGTCATACPTEAITYALPDPQ 239


>gi|91781709|ref|YP_556915.1| ferredoxin [Burkholderia xenovorans LB400]
 gi|91685663|gb|ABE28863.1| Ferredoxin [Burkholderia xenovorans LB400]
          Length = 85

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEP 61
          I  D E 
Sbjct: 59 IPRDPEH 65


>gi|77917677|ref|YP_355492.1| Fe-S-cluster-containing hydrogenase components 1 [Pelobacter
           carbinolicus DSM 2380]
 gi|77543760|gb|ABA87322.1| Fe-S-cluster-containing hydrogenase components 1 [Pelobacter
           carbinolicus DSM 2380]
          Length = 198

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           +C  C    C+  CP          + +  +P++C  C +C   CP DAI
Sbjct: 57  SCRHCDPAACLSACPAGAITRDPETDAVVQNPEKCQACAMCAMVCPFDAI 106


>gi|78357984|ref|YP_389433.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220389|gb|ABB39738.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 155

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C   CP   F + +     +    CI CG C   CPV+AI  D E   
Sbjct: 54  CVACNPAPCATACPTGAFSQRKGGGVKVDRSLCIRCGNCAEACPVEAIYIDPEESF 109



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 15/64 (23%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCGVCEPECPVDAIK-PDTEPG 62
           CI C   +C E CPV+          I P+E     CI CG C P CP   ++  D + G
Sbjct: 86  CIRCG--NCAEACPVEAI-------YIDPEESFPYVCIHCGRCVPFCPHACLELADADEG 136

Query: 63  LELW 66
            + +
Sbjct: 137 RQEY 140


>gi|15806869|ref|NP_295592.1| polyferredoxin [Deinococcus radiodurans R1]
 gi|6459648|gb|AAF11421.1|AE002026_9 polyferredoxin, putative [Deinococcus radiodurans R1]
          Length = 334

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 17 CVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          CV+ CP +      G   + I P+ C  CG+C   CP  A++ D    LE
Sbjct: 37 CVDACPHEAVTVNAGGYAVEIDPERCTGCGLCVQSCPSGALEYDLLAPLE 86



 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VV ++CI C    C  VCP          EG   L +    C  C  C   CP  AI   
Sbjct: 256 VVDDSCIDC--PVCANVCPTQAITRNLQPEGGVRLLLDLSACTGCMACLRSCPPQAIH-- 311

Query: 59  TEPGLELWL 67
                  WL
Sbjct: 312 ---EQRQWL 317


>gi|78046995|ref|YP_363170.1| ferredoxin [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035425|emb|CAJ23070.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 156

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 98  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 151


>gi|326428756|gb|EGD74326.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Salpingoeca sp. ATCC
           50818]
          Length = 209

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 108 ERCIACKL--CEAICPAQAITIETVPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 164



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 149 CIFCGF--CQEACPVDAIVEGPNFEY 172



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  +T P  +
Sbjct: 108 ERCIACKLCEAICPAQAITIETVPRED 134


>gi|296241969|ref|YP_003649456.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermosphaera aggregans DSM 11486]
 gi|296094553|gb|ADG90504.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosphaera aggregans DSM 11486]
          Length = 636

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C     +  CP            I  + C  CG+C   CP +AI     P  
Sbjct: 571 VDPEKCTGCLACVNLSACPALVLEPDSRKPVIIEELCAGCGLCASICPFNAISVANTPTQ 630

Query: 64  EL 65
           + 
Sbjct: 631 DW 632


>gi|227535963|ref|ZP_03966012.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300771669|ref|ZP_07081544.1| NADH-quinone oxidoreductase subunit I [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227244206|gb|EEI94221.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300761658|gb|EFK58479.1| NADH-quinone oxidoreductase subunit I [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 174

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 19/78 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 72  ERCTACGL--CALSCPAEAITMTAAERQKGEENLYREEKYAAVYEINMLRCIFCGLCEEA 129

Query: 50  CPVDAIKPDTEPGLELWL 67
           CP +AI  D       +L
Sbjct: 130 CPKEAIYLDGPHVTASYL 147


>gi|315230439|ref|YP_004070875.1| RNase L inhibitor [Thermococcus barophilus MP]
 gi|315183467|gb|ADT83652.1| RNase L inhibitor [Thermococcus barophilus MP]
          Length = 590

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYKPIIQEASCTGCGICVHKCPFNAI 66

Query: 56 KPDTEPGL 63
               P  
Sbjct: 67 TIVNLPEQ 74


>gi|117626444|ref|YP_859767.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
           APEC O1]
 gi|115515568|gb|ABJ03643.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
           APEC O1]
          Length = 305

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    C++ CP        N   I+ D CI CG C   CP  A++
Sbjct: 60  DCIRCG--KCIDACPQQALS-TTNAWFINRDRCIQCGKCTEICPTRALE 105


>gi|269849725|sp|Q8X616|YDHX_ECO57 RecName: Full=Uncharacterized ferredoxin-like protein ydhX; Flags:
           Precursor
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|15676051|ref|NP_273181.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|59802180|ref|YP_208892.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|121634001|ref|YP_974246.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|194099902|ref|YP_002003039.1| 4Fe-4S ferrodoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997905|ref|ZP_04717829.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae 35/02]
 gi|240015115|ref|ZP_04722028.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae DGI18]
 gi|240017564|ref|ZP_04724104.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae FA6140]
 gi|240081707|ref|ZP_04726250.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae FA19]
 gi|240113983|ref|ZP_04728473.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae MS11]
 gi|240116719|ref|ZP_04730781.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID18]
 gi|240118941|ref|ZP_04733003.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID1]
 gi|240122186|ref|ZP_04735148.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID24-1]
 gi|240124479|ref|ZP_04737435.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae PID332]
 gi|240124653|ref|ZP_04737539.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          SK-92-679]
 gi|240129154|ref|ZP_04741815.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          SK-93-1035]
 gi|254494740|ref|ZP_05107911.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|254805831|ref|YP_003084052.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|260439522|ref|ZP_05793338.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|261400047|ref|ZP_05986172.1| ferredoxin [Neisseria lactamica ATCC 23970]
 gi|268593756|ref|ZP_06127923.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|268597805|ref|ZP_06131972.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268600048|ref|ZP_06134215.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602390|ref|ZP_06136557.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604652|ref|ZP_06138819.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683110|ref|ZP_06149972.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683227|ref|ZP_06150089.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687537|ref|ZP_06154399.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042757|ref|ZP_06568498.1| ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|293398224|ref|ZP_06642429.1| ferredoxin [Neisseria gonorrhoeae F62]
 gi|304388924|ref|ZP_07370971.1| ferredoxin [Neisseria meningitidis ATCC 13091]
 gi|313667418|ref|YP_004047702.1| ferredoxin [Neisseria lactamica ST-640]
 gi|7225340|gb|AAF40582.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|59719075|gb|AAW90480.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|120865707|emb|CAM09434.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|193935192|gb|ACF31016.1| ferredoxin, 4Fe-4S bacterial type [Neisseria gonorrhoeae
          NCCP11945]
 gi|226513780|gb|EEH63125.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|254669373|emb|CBA08496.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254671137|emb|CBA08170.1| Ferredoxin [Neisseria meningitidis alpha153]
 gi|261391661|emb|CAX49109.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|268547145|gb|EEZ42563.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|268551593|gb|EEZ46612.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584179|gb|EEZ48855.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586521|gb|EEZ51197.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588783|gb|EEZ53459.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623394|gb|EEZ55794.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623511|gb|EEZ55911.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627821|gb|EEZ60221.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|269210270|gb|EEZ76725.1| ferredoxin [Neisseria lactamica ATCC 23970]
 gi|291013191|gb|EFE05157.1| ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|291611487|gb|EFF40557.1| ferredoxin [Neisseria gonorrhoeae F62]
 gi|304337058|gb|EFM03245.1| ferredoxin [Neisseria meningitidis ATCC 13091]
 gi|309378534|emb|CBX22806.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313004880|emb|CBN86306.1| putative ferredoxin [Neisseria lactamica 020-06]
 gi|316985968|gb|EFV64907.1| ferredoxin [Neisseria meningitidis H44/76]
 gi|317165359|gb|ADV08900.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
 gi|325133190|gb|EGC55861.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M6190]
 gi|325135232|gb|EGC57857.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M13399]
 gi|325138802|gb|EGC61354.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          ES14902]
 gi|325141268|gb|EGC63767.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          CU385]
 gi|325145445|gb|EGC67721.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240013]
 gi|325197412|gb|ADY92868.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          G2136]
 gi|325199337|gb|ADY94792.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          H44/76]
 gi|325203042|gb|ADY98496.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240149]
 gi|325203243|gb|ADY98696.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M01-240355]
 gi|325205216|gb|ADZ00669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M04-240196]
 gi|325207160|gb|ADZ02612.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          NZ-05/33]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPETH 69


>gi|226939464|ref|YP_002794537.1| NADH dehydrogenase subunit I [Laribacter hongkongensis HLHK9]
 gi|226714390|gb|ACO73528.1| NuoI [Laribacter hongkongensis HLHK9]
          Length = 160

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CP DAI
Sbjct: 59  ERCIACKL--CEAVCPAMAITIDSEQRADGTRRTTRYEIDYQKCIFCGFCEEACPTDAI 115



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D+E   +
Sbjct: 59 ERCIACKLCEAVCPAMAITIDSEQRAD 85


>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
          Length = 643

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C  T C   CP D    + +    I P++C+ CG C  +C   AI  +
Sbjct: 593 DKCKGC--TLCARTCPNDAVIGKVKEPHTIDPNKCVKCGACMEKCRFGAIYKE 643



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I PD+C  C +C   CP DA+
Sbjct: 590 IDPDKCKGCTLCARTCPNDAV 610


>gi|153808573|ref|ZP_01961241.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185]
 gi|149128895|gb|EDM20112.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185]
          Length = 343

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+  L +   +CI C  C   CP +A   DT 
Sbjct: 276 CTHCGL--CVVHCPAGAITKGDE-LNVDETKCIKCCACVKVCPRNAKVYDTP 324



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
                 C  CG+C   CP  AI    E
Sbjct: 270 VKDESLCTHCGLCVVHCPAGAITKGDE 296


>gi|85858317|ref|YP_460519.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus
           aciditrophicus SB]
 gi|85859241|ref|YP_461443.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus
           aciditrophicus SB]
 gi|85721408|gb|ABC76351.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus
           aciditrophicus SB]
 gi|85722332|gb|ABC77275.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus
           aciditrophicus SB]
          Length = 243

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECP--VDAI 55
           Y+  E C  C    C   CP+D     +  + I   D+CI CG C   CP    AI
Sbjct: 162 YIDPEKCQAC--MTCARRCPMDAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAI 215



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEP----GLELWLKINSEYATQWPNITT------ 82
             I P++C  C  C   CP+DAI    +       +  ++  + +A   P  +       
Sbjct: 161 YYIDPEKCQACMTCARRCPMDAIISAKKEVHIIEQDKCIRCGACFAACPPQFSAIVKLVG 220

Query: 83  --KKESLPSAAKMDGVKQK 99
                 LP   +    K K
Sbjct: 221 QPAPPPLPEGQRAVVKKSK 239


>gi|82702149|ref|YP_411715.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
 gi|110287762|sp|Q2YA98|NUOI1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|82410214|gb|ABB74323.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
          Length = 171

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC                F  I+   CI CG CE  CP DAI+
Sbjct: 49  ERCVACYL--CAAACPVDCIALQATEDEHERRYPEFFRINFSRCIFCGFCEEACPTDAIQ 106

Query: 57  PDTEPGLELWLKIN 70
              +  +  + + N
Sbjct: 107 LTPDFEMGEYNRKN 120


>gi|51596492|ref|YP_070683.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 32953]
 gi|145598187|ref|YP_001162263.1| electron transport complex protein RnfB [Yersinia pestis Pestoides
           F]
 gi|153949540|ref|YP_001400870.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024242|ref|YP_001720747.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis YPIII]
 gi|186895542|ref|YP_001872654.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis PB1/+]
 gi|51589774|emb|CAH21404.1| putative iron-sulfur protein [Yersinia pseudotuberculosis IP 32953]
 gi|145209883|gb|ABP39290.1| iron-sulfur protein [Yersinia pestis Pestoides F]
 gi|152961035|gb|ABS48496.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750776|gb|ACA68294.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186698568|gb|ACC89197.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 207

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIE 163


>gi|328474734|gb|EGF45539.1| nitrite reductase Fe-S protein NrfC [Vibrio parahaemolyticus 10329]
          Length = 228

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCLAACPYQ 143


>gi|307720678|ref|YP_003891818.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978771|gb|ADN08806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurimonas
           autotrophica DSM 16294]
          Length = 187

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C EVCP    Y  EN +  ++ D+CI C  C   CP DA   D  
Sbjct: 64  CQHCDDAPCEEVCPTHATYYDENGVVRVNADKCILCSYCMNACPYDARYVDDR 116


>gi|251792841|ref|YP_003007567.1| electron transport complex protein RnfB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534234|gb|ACS97480.1| electron transport complex protein RnfB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 197

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I PD C  C +C   CP   I
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIIGSNKAMHTIIPDLCTGCELCVAPCPTSCI 159



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 13/28 (46%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAI 55
                  IH D CI C  C   CPVDAI
Sbjct: 102 PAPKVAFIHEDMCIGCTKCIQACPVDAI 129


>gi|257791834|ref|YP_003182440.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489834|ref|ZP_07948331.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830006|ref|ZP_08163464.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|257475731|gb|ACV56051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911083|gb|EFV32695.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325488173|gb|EGC90610.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 261

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           V+   C  C +  CVE CPV   +         +   +CI C  C   CP  
Sbjct: 105 VMQNQCRQCPYPSCVEACPVGAMHADPETGVRLVDEGKCIGCERCVEACPFT 156


>gi|219871791|ref|YP_002476166.1| electron transport complex protein RnfB [Haemophilus parasuis
           SH0165]
 gi|219691995|gb|ACL33218.1| electron transport complex protein RnfB/NADH:ubiquinone
           oxidoreductase, subunit RnfB [Haemophilus parasuis
           SH0165]
          Length = 202

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+  E CI C  T C+  CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 AYIHEELCIGC--TKCIAACPVDAIVGTNKAMHTVIADFCTGCELCVAPCPTDCIE 161


>gi|209525025|ref|ZP_03273569.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Arthrospira maxima CS-328]
 gi|209494434|gb|EDZ94745.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Arthrospira maxima CS-328]
          Length = 1192

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 37/113 (32%)

Query: 6   TENCILCKHTDCVEVCPVDCF--------------------------YEGENFLA-IHPD 38
            + C+ C    C+ VCP                              +EG+ F   + P+
Sbjct: 687 ADVCVQCG--KCIMVCPHAVIRGKAYDESALNGAPETFKTTAVRDKAFEGQKFTIQVSPE 744

Query: 39  ECIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWPNITTK 83
           +C  CGVC   CP          AI  +++P +    + N E+    PN   +
Sbjct: 745 DCTGCGVCVDVCPAKNKSMPSKKAINMESQPPIRATERENWEFFLNLPNPDRR 797


>gi|206895457|ref|YP_002246544.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738074|gb|ACI17152.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265]
          Length = 450

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+C++ CP +          I    CIDCG C   CP  A
Sbjct: 17 EKCKGC--TNCIKRCPAEAIRVRNGKARIIDQLCIDCGECIRACPNHA 62



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          +  ++C  C  C   CP +AI+
Sbjct: 14 LDEEKCKGCTNCIKRCPAEAIR 35


>gi|158522645|ref|YP_001530515.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511471|gb|ABW68438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 392

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C    CV  C +      E    +   +CI CG+C   C   AI+ + +
Sbjct: 299 DACNGCGV--CVRRCQMGAIEVKEKKAHLDVGKCIGCGLCVTTCKTGAIRLEKK 350


>gi|397906|emb|CAA48368.1| NADH dehydrogenase I, subunit nuoI [Escherichia coli]
          Length = 179

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 57  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 114

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 115 LTPDFEMGEY 124


>gi|46201666|ref|ZP_00208197.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 233

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + V   C  C    CV+VCP        +  + +    CI C  C   CP  A
Sbjct: 89  AHSVPVMCQHCAKPACVDVCPTGASMKRADGIVLVDRHICIGCRYCMMACPYKA 142


>gi|237800535|ref|ZP_04588996.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023395|gb|EGI03452.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMADF 127


>gi|218782788|ref|YP_002434106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764172|gb|ACL06638.1| MvH Hase/Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1021

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY----EGEN-----FLAIHPDECIDCGVCEPECP 51
           VTE+C  C    CV+VCP          GE+      + + P  C  CGVC   CP
Sbjct: 938 VTEHCDGC--ALCVDVCPYRAIRLQESTGEDGRMHRMIQVDPALCKGCGVCAATCP 991



 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 25/83 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEGEN---------------FLAIHPDECI--- 41
           YV  + CI C    C E CP    D F EG N                 AI P+ CI   
Sbjct: 104 YVDMDKCIACGL--CAEKCPRPVADEFNEGVNNRKAIYIKYGQSVPLKYAIDPNACIYLT 161

Query: 42  --DCGVCEPECPVDAIKPDTEPG 62
              C  CE  CP  AI  + +  
Sbjct: 162 RGKCRACEKFCPTGAINFEDKAE 184


>gi|83591098|ref|YP_431107.1| thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
 gi|83574012|gb|ABC20564.1| Thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
          Length = 631

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 3   YVVT-ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +NC+ C++  C+++ CP       +    I P  C  CG+C   CP +AI+   E
Sbjct: 573 YAVSPDNCLSCRY--CLDLGCP--AISFSDGHGVIDPVLCNGCGLCTQVCPGEAIRKAGE 628

Query: 61  PGL 63
              
Sbjct: 629 EDE 631


>gi|78357324|ref|YP_388773.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219729|gb|ABB39078.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 439

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFL--AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + C+ C   +C   CP     E  E+     + P  C++CG C   CP  AI  +     
Sbjct: 54  DKCMACG--ECEYHCPTGVMQEVTEDGYRGVVDPVACVNCGQCLANCPFGAIHEEVSFVG 111

Query: 64  ELWLKI 69
           EL+ K+
Sbjct: 112 ELYEKL 117



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 22 PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          P D       F+ +  D+C+ CG CE  CP   ++  TE G  
Sbjct: 38 PKDVDPATIRFVEVDHDKCMACGECEYHCPTGVMQEVTEDGYR 80


>gi|54308453|ref|YP_129473.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum SS9]
 gi|46912882|emb|CAG19671.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum SS9]
          Length = 230

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPV 52
           +C  C +  CV VCP    ++  +   + + P +C+ CG C   CP 
Sbjct: 98  SCQHCDNAPCVHVCPTGASFKDPDTGIVDVDPFKCVGCGYCLAACPY 144


>gi|299470484|emb|CBN78476.1| NUOI homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 236

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 135 ERCISCKL--CEAICPAQAITIEAEQREDGSRKTTRYDIDMTKCIYCGFCQEACPVDAI 191



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 135 ERCISCKLCEAICPAQAITIEAEQRED 161



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG N+
Sbjct: 176 CIYCGF--CQEACPVDAIVEGPNY 197


>gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 491

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +TY +    C  C  T C +VCPV+C    +     I   +CI CG C  +C  D+I
Sbjct: 434 LTYTIDPAKCTGC--TLCTKVCPVECISGTKKQPHTIDATKCIKCGACYDKCKFDSI 488


>gi|257095311|ref|YP_003168952.1| NADH dehydrogenase subunit I [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047835|gb|ACV37023.1| NADH-quinone oxidoreductase, chain I [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        +             I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESDQRDDGSRRTTRYDIDLTKCIFCGFCEEACPVDAI 117



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESDQRDD 87


>gi|261402870|ref|YP_003247094.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           vulcanius M7]
 gi|261369863|gb|ACX72612.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           vulcanius M7]
          Length = 617

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  ENC  C    C EVC ++           + + CI CG C   CP +A
Sbjct: 490 VNEENCNGCG--RCAEVCKIEAIDIRGEMSYTNYNVCIGCGKCIKNCPNEA 538



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CV     D    G  +  ++ + C  CG C   C ++AI
Sbjct: 468 CPNC----CVRPQIHDVGIVGVKYPKVNEENCNGCGRCAEVCKIEAI 510


>gi|291287233|ref|YP_003504049.1| hypothetical protein Dacet_1321 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884393|gb|ADD68093.1| protein of unknown function DUF362 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 360

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E CILC    C++ CPVD      +F  +   +CI+C  C   C  DA+
Sbjct: 297 VLNEKCILC--MLCMKSCPVDAIAVINDFPFVDKKKCIECFCCHEVCESDAV 346


>gi|190358907|sp|A8F2T4|NUOI_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
          Length = 159

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQAACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C   CPVD   EG NF
Sbjct: 99  CIYCGL--CQAACPVDAIVEGPNF 120


>gi|288856257|ref|NP_001165784.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Nasonia vitripennis]
          Length = 201

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 100 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 156



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 100 ERCIACKLCEAICPAQAITIEAEERAD 126



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 141 CIYCGF--CQEACPVDAIVEGPNF 162


>gi|152982452|ref|YP_001353663.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
 gi|151282529|gb|ABR90939.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M  V  ++C LC    CV  CP     +  N   L      C+ CG+CE  CP +AI
Sbjct: 560 MVMVNKDSCTLC--MSCVGACPESALTDNANMPQLRFIEKNCVQCGLCEKTCPENAI 614



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  T C++VC  +      + + ++P+ C+ CG C   CP  A
Sbjct: 322 VGC--TACIDVCSAEAVSHHGDQIKVNPNLCVGCGACTTVCPSGA 364



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            + ++ D C  C  C   CP  A+  +       +++ N
Sbjct: 560 MVMVNKDSCTLCMSCVGACPESALTDNANMPQLRFIEKN 598



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + C  C  C   CP +AI
Sbjct: 196 IDLEACTRCNACVDVCPENAI 216



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAI 55
           E C  C    CV+VCP +     +    I   +C     C   C  + AI
Sbjct: 199 EACTRCN--ACVDVCPENAI---DLTYQIDLSKCKSHRDCVKACGTIGAI 243


>gi|78357433|ref|YP_388882.1| dissimilatory sulfite reductase subunit alpha and beta-like protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219838|gb|ABB39187.1| Dissimilatory sulfite reductase (desulfoviridin) alpha and beta
           subunits-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 215

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  C    C   CP D    G    A  P  CIDCG C   CP  A
Sbjct: 95  DVCTGCG--RCAAACPDDAIDMGSGVPAFDPLRCIDCGQCLLRCPEKA 140



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYE-GENFLAI-------HPDECIDCGVCEPECPVDAI 55
           V  CP  C      +   I       H D C  CG C   CP DAI
Sbjct: 67  VSGCPNGCARPHIADMGFISVCTPGVHQDVCTGCGRCAAACPDDAI 112


>gi|89893347|ref|YP_516834.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332795|dbj|BAE82390.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 190

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
           + ++  C  C + +C+ VCP   + +  + + +H PD+C  C  C   CP  A +
Sbjct: 60  FFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVASCPFGAPQ 114


>gi|115523011|ref|YP_779922.1| thiamine pyrophosphate binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115516958|gb|ABJ04942.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Rhodopseudomonas palustris BisA53]
          Length = 605

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +VTE C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IKP 
Sbjct: 543 IVTEQCTAC--QSCMNLGCPALTWSDQWFEGRHRVQIDPALCIGCTLCAQVCTIDCIKPT 600

Query: 59  TE 60
             
Sbjct: 601 AP 602


>gi|239624920|ref|ZP_04667951.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521306|gb|EEQ61172.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 362

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C   CP       +    +  D+C  CG+CE  CP  AI
Sbjct: 311 EACTGCGL--CERNCPYFALEMRDKKPFVDNDKCFGCGLCESRCPAQAI 357



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             ++  I  + C  CG+CE  CP  A++   +   
Sbjct: 302 TPSYPVIDREACTGCGLCERNCPYFALEMRDKKPF 336


>gi|213619042|ref|ZP_03372868.1| thiosulfate reductase electron transport protein PhsB [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-2068]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 53 SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 98


>gi|219853289|ref|YP_002467721.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris
           E1-9c]
 gi|219547548|gb|ACL17998.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris
           E1-9c]
          Length = 414

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP-------VDAIKPD 58
           C+ C+      +CP      G     I  D C++CG C   CP       + AI  +
Sbjct: 320 CVHCETCRAATLCPTGAISPGA---VIDRDRCVNCGTCVQVCPGPAFSGILGAITYE 373


>gi|194434710|ref|ZP_03066963.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
 gi|194417048|gb|EDX33164.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
          Length = 239

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E     +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|167772706|ref|ZP_02444759.1| hypothetical protein ANACOL_04088 [Anaerotruncus colihominis DSM
           17241]
 gi|167665184|gb|EDS09314.1| hypothetical protein ANACOL_04088 [Anaerotruncus colihominis DSM
           17241]
          Length = 172

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           +  C  C    C+  CPV C  +             CI C  C   CP  A + 
Sbjct: 57  SSACNHCADAPCIAACPVGCIKKDPKTGMTIYDNHNCIGCKSCAMACPFGAPRY 110


>gi|169634174|ref|YP_001707910.1| NADH dehydrogenase subunit I [Acinetobacter baumannii SDF]
 gi|169797051|ref|YP_001714844.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AYE]
 gi|184157036|ref|YP_001845375.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ACICU]
 gi|239501287|ref|ZP_04660597.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB900]
 gi|260551026|ref|ZP_05825231.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624]
 gi|260555657|ref|ZP_05827877.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347787|ref|ZP_07228528.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB056]
 gi|301510622|ref|ZP_07235859.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB058]
 gi|301595907|ref|ZP_07240915.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB059]
 gi|332852140|ref|ZP_08433967.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013150]
 gi|332867539|ref|ZP_08437692.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013113]
 gi|332872611|ref|ZP_08440579.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6014059]
 gi|156632697|sp|A3M2Q5|NUOI_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737380|sp|B2HU48|NUOI_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737381|sp|B0VU49|NUOI_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737382|sp|B0V894|NUOI_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|169149978|emb|CAM87872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AYE]
 gi|169152966|emb|CAP02012.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii]
 gi|183208630|gb|ACC56028.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Acinetobacter baumannii ACICU]
 gi|193076541|gb|ABO11199.2| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii ATCC 17978]
 gi|260405974|gb|EEW99461.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624]
 gi|260410568|gb|EEX03866.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|332729512|gb|EGJ60851.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013150]
 gi|332733956|gb|EGJ65101.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013113]
 gi|332739140|gb|EGJ69999.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6014059]
          Length = 180

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 LTPDFELGEYV 126


>gi|152995553|ref|YP_001340388.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Marinomonas sp. MWYL1]
 gi|150836477|gb|ABR70453.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Marinomonas
          sp. MWYL1]
          Length = 85

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ + CI C    C   CP D    G     I PD+C +C        C   CP+D 
Sbjct: 1  MALLINDRCINCD--MCEPECPNDAITMGAKIYVIDPDKCTECVGHYDQPTCVAVCPIDC 58

Query: 55 IKPD 58
          +KPD
Sbjct: 59 VKPD 62


>gi|104782528|ref|YP_609026.1| NADH dehydrogenase subunit I [Pseudomonas entomophila L48]
 gi|123255480|sp|Q1I7Z3|NUOI_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|95111515|emb|CAK16235.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Pseudomonas entomophila L48]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|127514085|ref|YP_001095282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126639380|gb|ABO25023.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 230

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C+   CV VCP       +    +A++ D C+ C  C   CP     I P+T    
Sbjct: 98  SCQHCEAAPCVRVCPTGAAYIDKETGIVAVNSDRCVGCQYCIAACPYQVRYIHPETRTAD 157

Query: 64  E 64
           +
Sbjct: 158 K 158



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 24/66 (36%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-----DECIDCG----------VCEP 48
           V ++ C+ C++  C+  CP            IHP     D+C  C            C  
Sbjct: 127 VNSDRCVGCQY--CIAACPYQV-------RYIHPETRTADKCDFCQKSRLAQGLQPACVE 177

Query: 49  ECPVDA 54
            CP  A
Sbjct: 178 ACPTKA 183


>gi|116623297|ref|YP_825453.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226459|gb|ABJ85168.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 247

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C+   C  VCPV    +          D+C+ C  C   CP      +    L    
Sbjct: 60  CMNCQQPACASVCPVGALQKTALGPVTYDADKCMGCRYCMQACPFQVPSYEWNQRLPKMR 119

Query: 68  KIN 70
           K N
Sbjct: 120 KCN 122


>gi|237749425|ref|ZP_04579905.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380787|gb|EEO30878.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 274

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            +NC +C    C ++CPV+     +   +   + CI CG C   CP
Sbjct: 199 GDNCSVCG--TCADICPVEAITLTDVSTSTDENLCISCGACISVCP 242



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 38  DECIDCGVCEPECPVDAI 55
           D C  CG C   CPV+AI
Sbjct: 200 DNCSVCGTCADICPVEAI 217


>gi|156039527|ref|XP_001586871.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980]
 gi|154697637|gb|EDN97375.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 229

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 185

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 186 ESP----------NAEYATETREELLYNKEKLLANGDKWE 215


>gi|157376057|ref|YP_001474657.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157318431|gb|ABV37529.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y  +  C  C    CV+ CPV   ++   +  + +  D CI C  C   CP DA + D
Sbjct: 63  AYYTSIGCNHCSEPACVKACPVGAMHKRKQDGLVHVASDLCIGCESCARACPYDAPQID 121


>gi|89074883|ref|ZP_01161333.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
 gi|89049280|gb|EAR54843.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
          Length = 551

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 6   TENCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           T +C LC    CV VCP             L I  D C+ CG+CE  CP   I  +    
Sbjct: 416 TTDCTLC--MSCVAVCPTRALHAIGNRPGLLFIEED-CVQCGMCEKACPEKVISLEPRFN 472

Query: 63  LEL 65
            + 
Sbjct: 473 WDW 475



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 17/47 (36%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C++ CP          +AI P  C   G C   CP +AI        
Sbjct: 193 CLDACPAGALSSDGVEVAIDPYLCQGVGSCATACPTEAITYALPDPQ 239


>gi|303247133|ref|ZP_07333408.1| response regulator receiver protein [Desulfovibrio fructosovorans
           JJ]
 gi|302491559|gb|EFL51444.1| response regulator receiver protein [Desulfovibrio fructosovorans
           JJ]
          Length = 1162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 20/82 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDC 43
            +V    C+ C    C +VCPV    E                    N   +  D C  C
Sbjct: 110 PFVDATKCVGCG--ACAKVCPVSVPNEFNAGLTSRGAVYLPVPHAIPNHYVVDLDACQRC 167

Query: 44  GVCEPECPVDAIKPDTEPGLEL 65
             C   CP  AI    +     
Sbjct: 168 WQCYEACPTGAIDFKLDERERH 189



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 9    CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C  C    C++VCP            + +    C  CG C   CP  A         ++ 
Sbjct: 1080 CTRCG--KCLDVCPYGARTLDTEHDRIVVDDILCQGCGSCASACPNSASFIRGFSDRQVL 1137

Query: 67   LKINSEYATQWPNITTKKESLPSAA 91
              I++  A     ++ +    P+  
Sbjct: 1138 SVIDAALA-----VSGRPAPAPATD 1157


>gi|238921030|ref|YP_002934545.1| cytochrome c nitrite reductase, Fe-S protein, [Edwardsiella
           ictaluri 93-146]
 gi|238870599|gb|ACR70310.1| cytochrome c nitrite reductase, Fe-S protein, putative
           [Edwardsiella ictaluri 93-146]
          Length = 223

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CV  CP    F +  + +  + PD C+ C  C   CP 
Sbjct: 91  SCQHCDDAPCVNACPTGASFRDAASGIVDVDPDLCVGCQYCIAACPY 137


>gi|307153522|ref|YP_003888906.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306983750|gb|ADN15631.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 533

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M Y + +NC  C    C   CP    +  +    I    C DC        C  +CP+ +
Sbjct: 1  MPYTIPDNCFGCG--TCQPQCPTGAIHVDDGRYWIESGLCNDCNEYSGEPQCVVQCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PIP 61



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
               PD C  CG C+P+CP  AI  D       W++
Sbjct: 1  MPYTIPDNCFGCGTCQPQCPTGAIHVD---DGRYWIE 34


>gi|167821535|ref|ZP_02453215.1| iron-sulfur cluster protein [Burkholderia pseudomallei 91]
          Length = 246

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|90423913|ref|YP_532283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18]
 gi|115502509|sp|Q215H2|NUOI1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|90105927|gb|ABD87964.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          P+   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIEAGP 83



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGL--CQEACPVDAIVEGPNF 123


>gi|332702632|ref|ZP_08422720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552781|gb|EGJ49825.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 263

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  CV+ CP            + I    CI CG C   CP  A
Sbjct: 61  ACMHCDNPTCVQACPTGATWKDPATGMVEIDRGLCIGCGNCIAACPYGA 109


>gi|330892471|gb|EGH25132.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str.
           301020]
          Length = 179

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMADF 127


>gi|317180082|dbj|BAJ57868.1| ferredoxin [Helicobacter pylori F32]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ +V + CI C    C E CP +   EG+    I PD C +C        C   CPVDA
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDEPRCVSVCPVDA 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 ILPD 62



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|220917951|ref|YP_002493255.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955805|gb|ACL66189.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 748

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI      C+  CP        +G   L  H D CI  G C  ECPV AI+
Sbjct: 61  CIG--SLSCLRACPEGDILGIVDGAAKLV-HADHCIGHGRCAAECPVGAIR 108


>gi|197123161|ref|YP_002135112.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter sp. K]
 gi|196173010|gb|ACG73983.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter sp. K]
          Length = 745

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI      C+  CP        +G   L  H D CI  G C  ECPV AI+
Sbjct: 61  CIG--SLSCLRACPEGDILGIVDGAAKLV-HADHCIGHGRCAAECPVGAIR 108


>gi|86159089|ref|YP_465874.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775600|gb|ABC82437.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 748

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI      C+  CP        +G   L  H D CI  G C  ECPV AI+
Sbjct: 61  CIG--SLSCLRACPEGDILGIVDGAAKLV-HADHCIGHGRCAAECPVGAIR 108


>gi|330445943|ref|ZP_08309595.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490134|dbj|GAA04092.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 551

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 6   TENCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           T++C LC    CV VCP        +    L I  D C+ CG+CE  CP   I  +    
Sbjct: 416 TKDCTLC--MSCVAVCPTRALHAIGDRPGLLFIEED-CVQCGMCEKACPEKVISLEPRFN 472

Query: 63  LEL 65
            + 
Sbjct: 473 WDW 475



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 17/47 (36%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+E CP          +AI P  C   G C   CP +AI        
Sbjct: 193 CLEACPAGALSSDGVEIAIDPYLCQGVGTCATACPTEAITYALPDPQ 239


>gi|310659325|ref|YP_003937046.1| cobyrinic acid a,c-diamide synthase [Clostridium sticklandii DSM
           519]
 gi|308826103|emb|CBH22141.1| Cobyrinic acid a,c-diamide synthase [Clostridium sticklandii]
          Length = 295

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +E CI C    C+E C  D   E E+   ++P  C  C +CE  CPV+AI  + +   EL
Sbjct: 66  SEKCINCGL--CMEKCRFDAI-ENESDYKVNPFACEGCSLCEYVCPVNAIIMNKDVAGEL 122

Query: 66  WL 67
            L
Sbjct: 123 ML 124



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          G N   I  ++CI+CG+C  +C  DAI+ +++  +  +
Sbjct: 58 GMNKAVIDSEKCINCGLCMEKCRFDAIENESDYKVNPF 95


>gi|312072386|ref|XP_003139042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
 gi|307765791|gb|EFO25025.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
          Length = 206

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 105 ERCIACKL--CEAICPAQAITIEAEARPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 161



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 146 CIYCGL--CQEACPVDAIVEGPNFEY 169



 Score = 37.1 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 105 ERCIACKLCEAICPAQAITIEAEA 128


>gi|258404666|ref|YP_003197408.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfohalobium retbaense DSM 5692]
 gi|257796893|gb|ACV67830.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfohalobium retbaense DSM 5692]
          Length = 286

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C  + C + CP +          + P +C  CG C   CP   ++     G      
Sbjct: 215 CIGC--SKCKKECPEEAITMDNFLAVVDPAKCTGCGACIEVCPTGVMRSLLPEGQHPMHA 272

Query: 69  INSEYATQ 76
           + SE A++
Sbjct: 273 VQSETASE 280



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           CV+ CP D  Y  +N L  + P +C  CG C   CP
Sbjct: 146 CVKNCPFDAMYMQDNGLPGVDPVKCTGCGKCVEICP 181



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 18/66 (27%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL----------------AIHPDECIDCGVCEPECPV 52
           C  C    CVE+CP D                         ++    CI C  C+ ECP 
Sbjct: 170 CTGCG--KCVEICPRDIPKLTPESQSTACLCCSHDMGKVVKSVCSAGCIGCSKCKKECPE 227

Query: 53  DAIKPD 58
           +AI  D
Sbjct: 228 EAITMD 233


>gi|261378974|ref|ZP_05983547.1| ferredoxin [Neisseria cinerea ATCC 14685]
 gi|296315172|ref|ZP_06865113.1| ferredoxin [Neisseria polysaccharea ATCC 43768]
 gi|269144589|gb|EEZ71007.1| ferredoxin [Neisseria cinerea ATCC 14685]
 gi|296837981|gb|EFH21919.1| ferredoxin [Neisseria polysaccharea ATCC 43768]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P  C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPSLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPETH 69


>gi|195454170|ref|XP_002074119.1| GK14477 [Drosophila willistoni]
 gi|194170204|gb|EDW85105.1| GK14477 [Drosophila willistoni]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|86158429|ref|YP_465214.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774940|gb|ABC81777.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 298

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C   CPV    +     +  +P+ C+ C  C   CP D  K +
Sbjct: 104 CMHCLAPACASACPVKAMTKSPEGPVVYNPNRCMGCRYCMIACPFDVPKYE 154


>gi|17864306|ref|NP_524719.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila
           melanogaster]
 gi|7300064|gb|AAF55234.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila
           melanogaster]
 gi|16768338|gb|AAL28388.1| GM02062p [Drosophila melanogaster]
 gi|220942892|gb|ACL83989.1| ND23-PA [synthetic construct]
 gi|220953000|gb|ACL89043.1| ND23-PA [synthetic construct]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|114564289|ref|YP_751803.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114335582|gb|ABI72964.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 211

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  D CI C  C   CP DA + D 
Sbjct: 63  AYYMSIACNHCSEPVCVKACPTGAMHKRREDGLVHVAADLCIGCESCARACPYDAPQIDK 122

Query: 60  E 60
           +
Sbjct: 123 D 123



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 13/62 (20%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC---------GVCEPECPVD 53
           +V  + CI C+   C   CP D     ++   +   +C  C           C   CP+ 
Sbjct: 97  HVAADLCIGCE--SCARACPYDAPQIDKDRKVM--TKCDGCFERLAEGKQPSCVESCPMR 152

Query: 54  AI 55
           AI
Sbjct: 153 AI 154


>gi|284007516|emb|CBA73012.1| Electron transport complex protein rnfB [Arsenophonus nasoniae]
          Length = 204

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++   NCI C  T C++ CPVD        L  +  D C  C +C   CP D I
Sbjct: 108 AFIDEANCIGC--TKCIQACPVDAIVGTTRALHTVVEDLCTGCDLCVAPCPTDCI 160


>gi|229591260|ref|YP_002873379.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens SBW25]
 gi|312961693|ref|ZP_07776191.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6]
 gi|229363126|emb|CAY50146.1| NADH Dehydrogenase I chain I [Pseudomonas fluorescens SBW25]
 gi|311283952|gb|EFQ62535.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|224372257|ref|YP_002606629.1| ferredoxin [Nautilia profundicola AmH]
 gi|223588828|gb|ACM92564.1| ferredoxin [Nautilia profundicola AmH]
          Length = 85

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ E CI C    CV+ CP       +    I PD C +C        C   CPVDA
Sbjct: 1  MSLMINEECIACD--ACVDECPNGAIEPADPIYEIDPDLCTECIEHGGEPQCVQVCPVDA 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|152972444|ref|YP_001337590.1| putative electron transport protein Fe-S center [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238897038|ref|YP_002921784.1| electron transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330002346|ref|ZP_08304309.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
 gi|150957293|gb|ABR79323.1| putative electron transport protein Fe-S center [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549366|dbj|BAH65717.1| electron transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537331|gb|EGF63583.1| electron transport protein HydN [Klebsiella sp. MS 92-3]
          Length = 161

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 16/47 (34%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C+   C  VCP        +   +    CI C  C   CP  A
Sbjct: 57  ACRQCEDAPCASVCPQGAIQRDNDVWWVDQRRCIGCKSCMVACPYGA 103


>gi|84489021|ref|YP_447253.1| Fe-S center containing protein [Methanosphaera stadtmanae DSM 3091]
 gi|84372340|gb|ABC56610.1| predicted Fe-S center containing protein [Methanosphaera stadtmanae
           DSM 3091]
          Length = 367

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 10  ILCKHTD-CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           I C   + C++ CP +     +    I+ ++CI C  C   CP +AIK + +   E +++
Sbjct: 194 IACLACNVCIDACPENAITV-DTHAHINYEKCIGCNDCIGACPKNAIKLN-KINSEEFIE 251

Query: 69  INSEYA 74
              EYA
Sbjct: 252 SMMEYA 257


>gi|70731263|ref|YP_261004.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf-5]
 gi|110287766|sp|Q4K9S9|NUOI_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|68345562|gb|AAY93168.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 627

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNI 80
           CP     +      I P++C  C +C   CP  AI  + +       +IN E   +    
Sbjct: 561 CPAGA-CQALKEYYIDPEKCKGCTLCSRVCPAGAITGEKKQPH----EINVELCLKCGTC 615

Query: 81  TTKK 84
             K 
Sbjct: 616 AEKC 619



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  E C  C  T C  VCP      E +    I+ + C+ CG C  +C   AI
Sbjct: 573 YIDPEKCKGC--TLCSRVCPAGAITGEKKQPHEINVELCLKCGTCAEKCKFGAI 624


>gi|320352432|ref|YP_004193771.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfobulbus propionicus DSM 2032]
 gi|320120934|gb|ADW16480.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfobulbus propionicus DSM 2032]
          Length = 275

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV  CP    +  E+ +  +    CI C  C   CP  +   +         
Sbjct: 136 CNHCDNPPCVRACPTKATFRSEDGIIGMDYHRCIGCRFCMAACPYGSRSFNWRDPRSFIT 195

Query: 68  KINSEYATQWPNITTKK 84
            IN +Y  +   +  K 
Sbjct: 196 DINRDYPARTRGVVEKC 212


>gi|309811972|ref|ZP_07705738.1| formate dehydrogenase-N subunit beta [Dermacoccus sp. Ellin185]
 gi|308434030|gb|EFP57896.1| formate dehydrogenase-N subunit beta [Dermacoccus sp. Ellin185]
          Length = 408

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++ CP    +  E   + +  D C  CG C   CP   I+
Sbjct: 222 SDVCKHCTHAGCLDNCPTGALFRTEFGTVVVQADVCNGCGYCVGGCPFGVIE 273



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 14/72 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDC---------GVCEPECP 51
           V  + C  C +  CV  CP       E    +   +  +C  C           C   CP
Sbjct: 252 VQADVCNGCGY--CVGGCPFGVIERREKTATVNHGNAQKCTLCYDRLKEGQTPACAQTCP 309

Query: 52  VDAIKPDTEPGL 63
             +IK  T   +
Sbjct: 310 TTSIKFGTHAEM 321


>gi|296273781|ref|YP_003656412.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arcobacter nitrofigilis DSM 7299]
 gi|296097955|gb|ADG93905.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
          nitrofigilis DSM 7299]
          Length = 84

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C E CP     EG+    I  D C +C        C   CPVD 
Sbjct: 1  MSLIITDECIACD--ACREECPNMAIEEGDPIYIIDSDRCTECVGHYEEPACVEVCPVDC 58

Query: 55 IKPDTEPGLELWLKI 69
          I  D     E   ++
Sbjct: 59 IIVD-PDNQETMEEL 72


>gi|284922649|emb|CBG35737.1| electron transport protein [Escherichia coli 042]
          Length = 175

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CCQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|284006925|emb|CBA72195.1| hydrogenase-4 component A [Arsenophonus nasoniae]
          Length = 209

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C  C+   C +VCPV+      N + ++   C+ C +C   CP   I+ 
Sbjct: 57  QLCHQCEDAPCAQVCPVNAINRINNAIQLNESLCVSCKLCGLACPFGTIEF 107


>gi|260948246|ref|XP_002618420.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238848292|gb|EEQ37756.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 219

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 118 ERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 174


>gi|161870931|ref|YP_001600111.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442]
 gi|161596484|gb|ABX74144.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442]
 gi|308388341|gb|ADO30661.1| putative ferredoxin [Neisseria meningitidis alpha710]
 gi|325137182|gb|EGC59777.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          M0579]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDQEHPETH 69


>gi|67906754|gb|AAY82817.1| predicted iron-sulfur cluster-binding protein [uncultured bacterium
           MedeBAC46A06]
          Length = 672

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++VCP        + + I P  C  CG C   CP  A
Sbjct: 296 CLDVCPAGAISVAGDTVEIDPAICGGCGYCGAVCPSGA 333



 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T+NC +C    CV  CP     +  +   L    D C+ CG+C   CP   I    +  L
Sbjct: 527 TDNCTICL--SCVSACPAGALQDNPDAPQLLFREDACLQCGICMATCPEKVITLVPQFNL 584

Query: 64  ELWLKINSEY 73
                +N+E 
Sbjct: 585 AD-SAMNAEL 593



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           I  D C  C  C   CP  A++ + +    L+ +
Sbjct: 525 IDTDNCTICLSCVSACPAGALQDNPDAPQLLFRE 558


>gi|50083956|ref|YP_045466.1| NADH dehydrogenase subunit I [Acinetobacter sp. ADP1]
 gi|81393674|sp|Q6FE64|NUOI_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49529932|emb|CAG67644.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter sp. ADP1]
          Length = 180

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 116 MTPDFELGEYV 126


>gi|332159393|ref|YP_004424672.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp. NA2]
 gi|331034856|gb|AEC52668.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp. NA2]
          Length = 613

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++ + C  CK    +  CP   +      + I    C  CG+C   CP DAIK   E
Sbjct: 555 IIEDKCTGCKACILLSGCPALIYDPETRKVKIDELICTGCGICNQLCPFDAIKFKEE 611


>gi|330864198|emb|CBX74259.1| electron transport complex protein rnfB [Yersinia enterocolitica
          W22703]
          Length = 126

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ++   NCI C  T C++ CPVD        +  + PD C  C +C   CP D I+
Sbjct: 29 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLPDLCTGCDLCVSPCPTDCIE 82


>gi|310826808|ref|YP_003959165.1| hydrogenase large subunit domain protein [Eubacterium limosum
          KIST612]
 gi|308738542|gb|ADO36202.1| hydrogenase large subunit domain protein [Eubacterium limosum
          KIST612]
          Length = 566

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG-LELW 66
          +C  C    C+  CPV      +N   I  D CI CG C   CP +A    ++   +  W
Sbjct: 10 SCRNC--YKCIRYCPVKAIKLMDNQAQIVEDLCIGCGNCFRICPQNAKYVASDVDSIRQW 67

Query: 67 LK 68
          L+
Sbjct: 68 LE 69


>gi|284162671|ref|YP_003401294.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
 gi|284012668|gb|ADB58621.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
          Length = 405

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 1  MTY-VVTENCILCKHTDCVEVCPVDCF---YEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          M + V ++NC+ C    CV+ CP       + G     I + + C  CG C   CP +A+
Sbjct: 1  MAHHVNSDNCVGC--RMCVDACPSGALSSKFNGSILTIILNSELCTGCGSCVDICPFNAL 58

Query: 56 KPDTEPGLELW-LKIN 70
          +      ++ + ++I+
Sbjct: 59 ELVPREEVKEFKIEID 74



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 31/92 (33%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN------FLAIH---PDE----------------- 39
           +E C  C    CV++CP +              + I    P++                 
Sbjct: 40  SELCTGCG--SCVDICPFNALELVPREEVKEFKIEIDILRPEKIEKKKYYMIARKVVDVS 97

Query: 40  -CIDCGVCEPECPVDAIKP-DTEPGLELWLKI 69
            C  CG C   CP + I   D       W+KI
Sbjct: 98  YCTGCGAC-TVCPPNGIIWKDGVVDFPDWVKI 128


>gi|255528595|ref|ZP_05395364.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|255507710|gb|EET84181.1| nitroreductase [Clostridium carboxidivorans P7]
          Length = 273

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V TE C+ C    CV+ C P D     +N   I+   C  CG C   CP  AI  D 
Sbjct: 1  MMKVDTEKCVGCGL--CVKDCFPKD-IEMVDNKAKINNVTCFKCGHCIAVCPKAAITTD- 56

Query: 60 EPGLELWLKINSEYATQWPN 79
          E  +E   + N E  +  P+
Sbjct: 57 EYNMEDVKEYNKEDFSIQPD 76


>gi|254294094|ref|YP_003060117.1| NADH dehydrogenase subunit I [Hirschia baltica ATCC 49814]
 gi|254042625|gb|ACT59420.1| NADH-quinone oxidoreductase, chain I [Hirschia baltica ATCC 49814]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 118

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   +
Sbjct: 119 EGPNFEFSTETREELFYDKDRLLS 142


>gi|229523193|ref|ZP_04412600.1| electron transport complex protein RnfB [Vibrio cholerae TM
           11079-80]
 gi|229525629|ref|ZP_04415034.1| electron transport complex protein RnfB [Vibrio cholerae bv.
           albensis VL426]
 gi|229339210|gb|EEO04227.1| electron transport complex protein RnfB [Vibrio cholerae bv.
           albensis VL426]
 gi|229339556|gb|EEO04571.1| electron transport complex protein RnfB [Vibrio cholerae TM
           11079-80]
          Length = 195

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD    G   +  +  +EC  C +C   CP D I+    
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPV 164

Query: 58  DTEPGLELWLKINS 71
            T P    W ++N+
Sbjct: 165 QTTPESWKW-QLNA 177


>gi|254520968|ref|ZP_05133023.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|219718559|gb|EED37084.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 137

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
             +V  +CI C  T C++ CPVD    G  ++  +  D C  C +C P CPVD I+
Sbjct: 80  ALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIE 133


>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
 gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
          Length = 624

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  E C  C  + C   CP      E      I  ++C+ CG+C  +C  +AI+
Sbjct: 569 YVINPELCKSC--SLCARACPQGAISGERGKPYVIDQEKCVKCGICFEKCKFNAIE 622



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP            I+P+ C  C +C   CP  AI  +
Sbjct: 558 CPSGT-CTALRKYVINPELCKSCSLCARACPQGAISGE 594


>gi|134096059|ref|YP_001101134.1| 4Fe-4S ferredoxin-type protein [Herminiimonas arsenicoxydans]
 gi|133739962|emb|CAL63013.1| Ferredoxin [Herminiimonas arsenicoxydans]
          Length = 87

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y G+    I P +C +C        C+  CPV+ 
Sbjct: 1  MALLITDECINCDV--CEPECPNDAIYMGQEIYEIDPTKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 I------KPDTEPGLELWLKINSEY 73
          I      +   E     + ++ +E 
Sbjct: 59 IPFNPAWRESKEELQAKYERLQAEL 83


>gi|17944955|gb|AAL48541.1| RE02647p [Drosophila melanogaster]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPV AI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVGAI 172



 Score = 37.4 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPV    EG NF
Sbjct: 157 CIYCGF--CQEACPVGAIVEGPNF 178


>gi|49081734|gb|AAT50267.1| PA2644 [synthetic construct]
          Length = 183

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMGEF 127


>gi|78187077|ref|YP_375120.1| ferredoxin, 4Fe-4S [Chlorobium luteolum DSM 273]
 gi|78166979|gb|ABB24077.1| ferredoxin, 4Fe-4S [Chlorobium luteolum DSM 273]
          Length = 62

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +TE C  C    C   CPV+    GE    I    C+DC        C   CPVD 
Sbjct: 1  MAHRITETCTYC--AACEPECPVNAISAGEEIYVIDEAACVDCIGYHDEAACVAVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|75676070|ref|YP_318491.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255]
 gi|115502535|sp|Q3SRF2|NUOI_NITWN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|74420940|gb|ABA05139.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          P+   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIEAGP 83



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGL--CQEACPVDAIVEGPNF 123


>gi|121997163|ref|YP_001001950.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121588568|gb|ABM61148.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Halorhodospira halophila SL1]
          Length = 253

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C++  CV VCP    Y+ E+ +  +  D CI C  C   CP        E  L
Sbjct: 57  PCMQCENPTCVYVCPTRATYKTEDGVVLVDWDRCIGCKYCMIACPYGVRFYADEKPL 113


>gi|323508175|emb|CBQ68046.1| probable NADH-ubiquinone oxidoreductase 23 kDa subunit precursor
           [Sporisorium reilianum]
          Length = 265

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 164 ERCIACKL--CEAICPAQAITIESEPREDGARRTTRYDIDMTKCIYCGFCQEACPVDAI 220



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  ++EP  +
Sbjct: 164 ERCIACKLCEAICPAQAITIESEPRED 190



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   E +N   
Sbjct: 205 CIYCGF--CQEACPVDAIVETQNTEY 228


>gi|302341854|ref|YP_003806383.1| hypothetical protein Deba_0414 [Desulfarculus baarsii DSM 2075]
 gi|301638467|gb|ADK83789.1| protein of unknown function DUF362 [Desulfarculus baarsii DSM 2075]
          Length = 376

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C  +CP  C        +   D CI C  C   CPV AI
Sbjct: 316 CRACG--KCAAICPAGCLRLEGRRASFDHDRCIRCYCCHEVCPVGAI 360


>gi|259416891|ref|ZP_05740811.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259348330|gb|EEW60107.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 192

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 7/60 (11%)

Query: 3   YV-VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP--VDAIKP 57
           YV ++E C LC+H  C+  CP D  + GE  + L I    C  CG+C   CP  V AI P
Sbjct: 127 YVTISEGCTLCQH--CIWSCPSDAIHLGEQGDTLEIRDRHCTGCGLCASACPERVLAILP 184


>gi|256830862|ref|YP_003159590.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580038|gb|ACU91174.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 369

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E+C  C H  CVEVC       +  + ++I  D+C  C  C   C    ++ D    +  
Sbjct: 193 EHCTGCGH--CVEVCSHGALTLDLNSKISIDRDKCAGCAACFLVCRSGGLEVDWRVDVNT 250

Query: 66  WLKINSEYAT 75
           +L+  +EYA 
Sbjct: 251 FLERMAEYAA 260



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           IHP+ C  CG C   C   A+  D  
Sbjct: 190 IHPEHCTGCGHCVEVCSHGALTLDLN 215


>gi|217966854|ref|YP_002352360.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724]
 gi|217335953|gb|ACK41746.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724]
          Length = 390

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+ ++ C  C    C +VC  D   E +    I  D C  CG+C   CP  AI
Sbjct: 327 AYINSDLCTSCG--ICKKVCIYDAPIEKDGKYFIT-DLCDGCGLCVRLCPTKAI 377



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 34  AIHPDECIDCGVCEPECPVDA-IKPD 58
            I+ D C  CG+C+  C  DA I+ D
Sbjct: 328 YINSDLCTSCGICKKVCIYDAPIEKD 353


>gi|168183630|ref|ZP_02618294.1| [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|237797011|ref|YP_002864563.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
 gi|182673207|gb|EDT85168.1| [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|229262829|gb|ACQ53862.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
          Length = 449

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 13  KHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
             T C   CP D     +  N   I  ++C DCG C   CP  +I
Sbjct: 91  GKTFCQNSCPFDAILINKKTNSTYIDAEKCTDCGFCVEACPTGSI 135


>gi|170680331|ref|YP_001746462.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           SMS-3-5]
 gi|170518049|gb|ACB16227.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli
           SMS-3-5]
          Length = 223

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDRAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|194366700|ref|YP_002029310.1| ferredoxin [Stenotrophomonas maltophilia R551-3]
 gi|194349504|gb|ACF52627.1| electron transport complex, RnfABCDGE type, B subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 137

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
             +V  +CI C  T C++ CPVD    G  ++  +  D C  C +C P CPVD I+
Sbjct: 80  ALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIE 133


>gi|110641792|ref|YP_669522.1| putative ferredoxin-like protein YdhX [Escherichia coli 536]
 gi|110343384|gb|ABG69621.1| putative ferredoxin-like protein YdhX [Escherichia coli 536]
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|41582337|gb|AAS07951.1| NADH-quinone oxidoreductase, chain I [uncultured marine bacterium
           463]
          Length = 175

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP +AI+
Sbjct: 53  ERCVACNL--CAVACPVDCIALQQGVKEDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQ 110


>gi|83721382|ref|YP_441028.1| ferredoxin [Burkholderia thailandensis E264]
 gi|167579757|ref|ZP_02372631.1| ferredoxin [Burkholderia thailandensis TXDOH]
 gi|167617833|ref|ZP_02386464.1| ferredoxin [Burkholderia thailandensis Bt4]
 gi|257140319|ref|ZP_05588581.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83655207|gb|ABC39270.1| ferredoxin [Burkholderia thailandensis E264]
          Length = 87

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPQD 62


>gi|34496404|ref|NP_900619.1| NADH dehydrogenase subunit I [Chromobacterium violaceum ATCC 12472]
 gi|81656630|sp|Q7NZH3|NUOI_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|34102257|gb|AAQ58623.1| NADH-ubiquinone oxidoreductase, chain I [Chromobacterium violaceum
           ATCC 12472]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAMAISIESEQREDGTRRTSRYDIDLTKCIFCGFCEEACPVDAI 117



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAISIESEQRED 87


>gi|30249729|ref|NP_841799.1| NADH dehydrogenase subunit I [Nitrosomonas europaea ATCC 19718]
 gi|75540328|sp|Q82TV1|NUOI_NITEU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|30180766|emb|CAD85680.1| nuoI; NADH dehydrogenase I (chain I) oxidoreductase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESEQRDDSTRRTTRYDIDMIKCIFCGFCEEACPVDAI 117



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD 87


>gi|85076501|ref|XP_955936.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa
           OR74A]
 gi|3929361|sp|Q12644|NDUS8_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; Flags: Precursor
 gi|1246816|emb|CAA64794.1| ferredoxin-like iron-sulfur subunit of mitochondrial complex I
           [Neurospora crassa]
 gi|28916969|gb|EAA26700.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa
           OR74A]
          Length = 219

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 118 ERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 175

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 176 ESP----------NAEYATE 185



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 99  PISPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERAD 144


>gi|301771866|ref|XP_002921339.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
 gi|301771868|ref|XP_002921340.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Ailuropoda melanoleuca]
          Length = 210

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAEPRAD 135



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|302803981|ref|XP_002983743.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii]
 gi|302817680|ref|XP_002990515.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii]
 gi|300141683|gb|EFJ08392.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii]
 gi|300148580|gb|EFJ15239.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii]
          Length = 215

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI
Sbjct: 114 ERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 170



 Score = 37.8 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 114 ERCIACKLCEAVCPAQAITIEAEERED 140



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 155 CIYCGF--CQEACPVDAIVEGPNF 176


>gi|285019250|ref|YP_003376961.1| ferredoxin protein [Xanthomonas albilineans GPE PC73]
 gi|283474468|emb|CBA16969.1| putative ferredoxin protein [Xanthomonas albilineans]
          Length = 136

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
             V+  +CI C  T C++ CPVD    G   +  +    C  C +C P CPVD I
Sbjct: 81  ALVIEADCIGC--TKCIQACPVDAIVGGAKHMHTVLAPLCTGCALCLPACPVDCI 133


>gi|240102127|ref|YP_002958435.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
 gi|239909680|gb|ACS32571.1| 7Fe ferredoxin [Thermococcus gammatolerans EJ3]
          Length = 167

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
          C  C+   C++VCP    ++  +   I  P++CI C +C   CP  
Sbjct: 47 CRHCEKAPCMDVCPAGAIFKDYDGAVIIDPNKCIGCMMCLAVCPFG 92


>gi|238898693|ref|YP_002924374.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466452|gb|ACQ68226.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 180

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEKKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
 gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
          Length = 659

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +TY +  + C  C  T C   CPV C          I    CI CG C   C   A+
Sbjct: 602 LTYRIDADKCRGC--TLCARRCPVGCITGKPREAYAIDETRCIKCGACLECCKFGAV 656


>gi|297583518|ref|YP_003699298.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297141975|gb|ADH98732.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 276

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
            C  C+   C +VCP       +   + I  ++C+ C  C   CP D
Sbjct: 72  ACYHCEDAACEKVCPEGAISTTDMGNVVIDQEQCVGCSYCTQNCPFD 118


>gi|297619405|ref|YP_003707510.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378382|gb|ADI36537.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 163

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           +  CI C    C+E CP       +N  ++I    C+ CG C  ECPV AI+ 
Sbjct: 96  SNACIGCG--KCLE-CPYGAVNNTDNIGISIDHQACVLCGDCIDECPVSAIRF 145


>gi|73982759|ref|XP_864136.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) isoform 2 [Canis familiaris]
          Length = 206

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAEPRAD 135



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|226944925|ref|YP_002799998.1| NADH dehydrogenase subunit I [Azotobacter vinelandii DJ]
 gi|226719852|gb|ACO79023.1| NADH-quinone oxidoreductase, chain I [Azotobacter vinelandii DJ]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMSEY 127


>gi|327403952|ref|YP_004344790.1| NADH dehydrogenase subunit I [Fluviicola taffensis DSM 16823]
 gi|327319460|gb|AEA43952.1| NADH dehydrogenase subunit I [Fluviicola taffensis DSM 16823]
          Length = 179

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 72  ENCTACGL--CAVACPAEAITMTSEERKKGEEHLYREEKYATTYEINMLRCIFCGLCEEA 129

Query: 50  CPVDAIK 56
           CP +AI 
Sbjct: 130 CPKEAIF 136



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + C  CG+C   CP +AI   +E 
Sbjct: 72 ENCTACGLCAVACPAEAITMTSEE 95


>gi|257459788|ref|ZP_05624895.1| anaeroBic dimethyl sulfoxide reductase chain B [Campylobacter
           gracilis RM3268]
 gi|257442804|gb|EEV17940.1| anaeroBic dimethyl sulfoxide reductase chain B [Campylobacter
           gracilis RM3268]
          Length = 193

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C++C+ + CV+VCP    ++ ++ +  I    C+ C  C   CP DA   D
Sbjct: 62  SCVMCEDSPCVDVCPTGASFKTKDGVTLIDERLCVSCKYCILACPYDARFVD 113


>gi|195953852|ref|YP_002122142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933464|gb|ACG58164.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 165

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           +Y +  NC  C    CV  CP     + ++ L    D  CI C  C   CP  AI  + E
Sbjct: 46  SYFMPMNCFHCDVAPCVYACPTSAMTKRDDGLVFVRDNLCIGCKACIIACPYGAISFNPE 105

Query: 61  PG 62
             
Sbjct: 106 TE 107


>gi|195328615|ref|XP_002031010.1| GM25751 [Drosophila sechellia]
 gi|194119953|gb|EDW41996.1| GM25751 [Drosophila sechellia]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|171464203|ref|YP_001798316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171193741|gb|ACB44702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 88

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y G     I P +C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAIYMGLEIYEIDPSKCTECVGHYDAPQCRQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  + E     
Sbjct: 59 ILFNPEHTETQ 69


>gi|167855542|ref|ZP_02478304.1| translation initiation factor IF-1 [Haemophilus parasuis 29755]
 gi|219871281|ref|YP_002475656.1| nitrate reductase [Haemophilus parasuis SH0165]
 gi|167853343|gb|EDS24595.1| translation initiation factor IF-1 [Haemophilus parasuis 29755]
 gi|219691485|gb|ACL32708.1| nitrate reductase [Haemophilus parasuis SH0165]
          Length = 225

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP       +    + ++PD C+ C  C   CP 
Sbjct: 95  QSCQHCSNAPCVSVCPTGASFIDKATGIVDVNPDLCVGCAYCIAVCPY 142


>gi|218782731|ref|YP_002434049.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764115|gb|ACL06581.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 340

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPDTEP 61
           NC+ C    CV+ C      E +    I PD C  CG C   CP +A I  +  P
Sbjct: 282 NCLGCGV--CVDRCQFHAI-ELDEVAKIDPDSCFGCGNCVLTCPAEALILEEIRP 333


>gi|148244397|ref|YP_001219091.1| NADH dehydrogenase subunit I [Candidatus Vesicomyosocius okutanii
           HA]
 gi|156633542|sp|A5CXG5|NUOI_VESOH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146326224|dbj|BAF61367.1| NADH dehydrogenase I chain I [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 163

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGEN---FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP +          +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPANAITIESKMRDDGTRRTTQYDIDLFKCIFCGFCEEACPVDAI 118



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP +AI  +++
Sbjct: 62 ERCIACKLCEAVCPANAITIESK 84


>gi|158520765|ref|YP_001528635.1| proto-chlorophyllide reductase 57 kD subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509591|gb|ABW66558.1| Proto-chlorophyllide reductase 57 kD subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 263

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 5   VTE-NCILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ +C LC    CV  C  P  C  E      I P  C+ CG C   CP   I
Sbjct: 142 ITDADCTLCG--ACVAACRDPAVCLDEANTRPVIDPGLCLACGACAKACPTGTI 193


>gi|90413331|ref|ZP_01221325.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum 3TCK]
 gi|90325732|gb|EAS42195.1| putative nitrite reductase, Fe-S protein (NrfC) [Photobacterium
           profundum 3TCK]
          Length = 230

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPV 52
           +C  C +  CV VCP    ++  +   + + P +C+ CG C   CP 
Sbjct: 98  SCQHCDNAPCVHVCPTGASFKDPDTGIVDVDPFKCVGCGYCLAACPY 144


>gi|59711541|ref|YP_204317.1| electron transport complex protein RnfB [Vibrio fischeri ES114]
 gi|197334877|ref|YP_002155697.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
 gi|75507049|sp|Q5E6B7|RNFB_VIBF1 RecName: Full=Electron transport complex protein rnfB
 gi|226735435|sp|B5FCN4|RNFB_VIBFM RecName: Full=Electron transport complex protein rnfB
 gi|59479642|gb|AAW85429.1| predicted iron-sulfur protein (Rnf/Rsx reducing system) [Vibrio
           fischeri ES114]
 gi|197316367|gb|ACH65814.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
          Length = 194

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +   EC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIESECTGCDLCVAPCPTDCIE 160


>gi|332528400|ref|ZP_08404394.1| RnfABCDGE type electron transport complex subunit B [Hylemonella
           gracilis ATCC 19624]
 gi|332042163|gb|EGI78495.1| RnfABCDGE type electron transport complex subunit B [Hylemonella
           gracilis ATCC 19624]
          Length = 248

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPD-- 58
           V+ E+ CI C  T C++ CP D    G   +   I    C  C +C P CPVD I  +  
Sbjct: 83  VIDEDWCIGC--TLCLKACPTDAILGGNKHMHTVIDA-YCTGCELCIPVCPVDCIHMEPV 139

Query: 59  ---------TEPGLELWLKINSEYATQ 76
                       G   W    +  A Q
Sbjct: 140 VHDVGATGPVPTGWAAWTADQAATARQ 166



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 25  CFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           C  EG   +  I  D CI C +C   CP DAI
Sbjct: 73  CGSEGPMTVAVIDEDWCIGCTLCLKACPTDAI 104


>gi|328773488|gb|EGF83525.1| hypothetical protein BATDEDRAFT_15687 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 223

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEPRED 148



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNFEY 186


>gi|303258379|ref|ZP_07344382.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302858825|gb|EFL81913.1| formate dehydrogenase, iron-sulfur subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 321

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C+ + C E CP       E   +    D C+ CG+C   CP    +
Sbjct: 145 SDQCKHCRTSPCHEACPTGAIVRNEFGGVYYQTDICMGCGMCVAACPFGVPE 196


>gi|222033427|emb|CAP76168.1| Uncharacterized ferredoxin-like protein ydhX [Escherichia coli
           LF82]
 gi|307553692|gb|ADN46467.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli ABU
           83972]
          Length = 222

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 137


>gi|255655815|ref|ZP_05401224.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-23m63]
 gi|296450946|ref|ZP_06892693.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP08]
 gi|296879088|ref|ZP_06903084.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP07]
 gi|296260164|gb|EFH07012.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP08]
 gi|296429961|gb|EFH15812.1| anaerobic sulfite reductase subunit C [Clostridium difficile NAP07]
          Length = 315

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C+ CK    VE CPV      +N  L I  + C +CG C   C  D+I+ + E G +
Sbjct: 169 SELCVGCKKCAVVEACPVKAAKLTDNGKLEIDSNLCNNCGKCIESCNFDSIE-EKESGYK 227

Query: 65  LWL------------KINSEYATQ 76
           +++            +IN  ++ +
Sbjct: 228 VYIGGKWGKSVRPGTQINRLFSKE 251



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 10/57 (17%)

Query: 18  VEVCPVDCFYEGENFLAI--------HPDECIDCGVC--EPECPVDAIKPDTEPGLE 64
           V  CP +C     N L I          + C+ C  C     CPV A K      LE
Sbjct: 142 VGGCPNNCIKPDLNDLGIVGQRVPDYDSELCVGCKKCAVVEACPVKAAKLTDNGKLE 198


>gi|157161136|ref|YP_001458454.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
 gi|157066816|gb|ABV06071.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
          Length = 239

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 107 QSCQHCEDAPCIDVCPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 166

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 167 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 202


>gi|150389448|ref|YP_001319497.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949310|gb|ABR47838.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 595

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAIK 56
           YV    CI C    CV   CP     E +++     +I  + C+ C +C   CPV+AIK
Sbjct: 534 YVDPSICIGC--RSCVNTNCPPIRMKEYKDYDKLKSSIDANMCVGCSICAQVCPVNAIK 590


>gi|257064390|ref|YP_003144062.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792043|gb|ACV22713.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 450

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 16/83 (19%)

Query: 3  YVVTE-----------NCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVC 46
          YV++E            C+  ++ +     C  VC      + E  + + PD+CI CG C
Sbjct: 2  YVISEMNSPKLSVHANRCVFVRNRNADCLRCASVCTTGAISKSEAGVTVDPDKCIGCGTC 61

Query: 47 EPECPVDAIKPDTEPGLELWLKI 69
             CP   ++        ++ ++
Sbjct: 62 ATACPSCCLEAMNPSDETMFFQM 84



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDE-CIDCGVCEPECPVDAIKPDTE 60
           T+ C  C    C   CP           + F   H    C+ C +CE  CP  AI     
Sbjct: 312 TDICRSC--RMCTVFCPTGAISRFDTKDDAFGVEHRSALCMQCRLCETICPEHAITVSDT 369

Query: 61  PGLELWL 67
             L+ ++
Sbjct: 370 VSLDEFV 376


>gi|253564715|ref|ZP_04842171.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. 3_2_5]
 gi|251946180|gb|EES86557.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. 3_2_5]
          Length = 387

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV 52
          +C  C  T C   C        E+   FL   I+  +CIDCG+C   CPV
Sbjct: 9  DCCGC--TACTSACNRGAIIMQEDEQGFLYPHINTTQCIDCGLCNKVCPV 56


>gi|240172913|ref|ZP_04751572.1| Fe-S-cluster-containing hydrogenase, HybA [Mycobacterium kansasii
           ATCC 12478]
          Length = 293

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   I
Sbjct: 113 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQQDICNGCGYCVSGCPYGVI 163


>gi|218780381|ref|YP_002431699.1| NAD-dependent epimerase/dehydratase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761765|gb|ACL04231.1| NAD-dependent epimerase/dehydratase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 587

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T  +T++C  C    C++ C  D     EN  A+  D C  CG C   CP+ A+ 
Sbjct: 510 LTMTITDDCNGCGV--CLDTCGFDAIKI-ENGKAVQTDACRGCGRCATYCPLGAVH 562


>gi|156937322|ref|YP_001435118.1| sulfide reductase, subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566306|gb|ABU81711.1| sulfide reductase, subunit B [Ignicoccus hospitalis KIN4/I]
          Length = 353

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +   C  C++  C  VCPV   + E +  + +    CI C  C   CP  A
Sbjct: 164 IPVACNQCEYPPCTMVCPVRATWQEADGIVVVDSYRCIGCRYCITACPYGA 214


>gi|134096493|ref|YP_001101568.1| putative Iron-sulfur cluster-binding protein (partial)
           [Herminiimonas arsenicoxydans]
 gi|133740396|emb|CAL63447.1| Putative iron-sulfur cluster ferredoxin [Herminiimonas
           arsenicoxydans]
          Length = 243

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y  E +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRESDGLVLVDYDKCIGCNYCAWACPYGARELDE 125


>gi|28870536|ref|NP_793155.1| NADH dehydrogenase I subunit I [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970028|ref|ZP_03398160.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381383|ref|ZP_07229801.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062154|ref|ZP_07253695.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato K40]
 gi|302130464|ref|ZP_07256454.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|81730550|sp|Q87ZQ2|NUOI_PSESM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|28853784|gb|AAO56850.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925132|gb|EEB58695.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875766|gb|EGH09915.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965585|gb|EGH65845.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017278|gb|EGH97334.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMADF 127


>gi|330810470|ref|YP_004354932.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|75527983|sp|Q8RQ74|NUOI_PSEFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|19483810|gb|AAL89571.1| NADH dehydrogenase I subunit I [Pseudomonas fluorescens]
 gi|327378578|gb|AEA69928.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|294626911|ref|ZP_06705502.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665011|ref|ZP_06730320.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598771|gb|EFF42917.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605230|gb|EFF48572.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 142

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 84  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 137


>gi|213612664|ref|ZP_03370490.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-2068]
          Length = 119

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67


>gi|195570536|ref|XP_002103263.1| GD20325 [Drosophila simulans]
 gi|194199190|gb|EDX12766.1| GD20325 [Drosophila simulans]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|195395498|ref|XP_002056373.1| GJ10912 [Drosophila virilis]
 gi|194143082|gb|EDW59485.1| GJ10912 [Drosophila virilis]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|166712771|ref|ZP_02243978.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 142

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 84  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIQ 137


>gi|153852617|ref|ZP_01994054.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814]
 gi|149754259|gb|EDM64190.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814]
          Length = 607

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V ++ CI CK   C++   CP      G   + I    C  CG+C   CPV AI
Sbjct: 550 HVSSDKCIGCK--KCIKELGCPAIVLNNGN--VCIDSSMCTGCGLCSQVCPVTAI 600


>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 639

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C  T C   CP D      +    I+P++C+ CG C  +C   AI  +
Sbjct: 589 DKCKGC--TLCARTCPADAIIGKVKEVHMINPEKCLKCGACMEKCRFGAIYKE 639



 Score = 41.7 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I PD+C  C +C   CP DAI
Sbjct: 583 QYKIDPDKCKGCTLCARTCPADAI 606


>gi|86748357|ref|YP_484853.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris HaA2]
 gi|86571385|gb|ABD05942.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris HaA2]
          Length = 607

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VVT  C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 544 VVTSQCTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 601

Query: 59  TEP 61
           T P
Sbjct: 602 TPP 604


>gi|86156757|ref|YP_463542.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773268|gb|ABC80105.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 640

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 21/73 (28%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECID----------CGVCE 47
           +T  C  C    C   CPV+    GE       N   +  D+C            CG C 
Sbjct: 382 ITRMCANCD--RCARACPVNAVPMGEPTVENGVNMWQVDKDKCTRFRTGNLNGNMCGACL 439

Query: 48  PECPVDAIKPDTE 60
             CP +  KPDT 
Sbjct: 440 AVCPYN--KPDTP 450


>gi|15678427|ref|NP_275542.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621461|gb|AAB84905.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 341

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           YV+ +  CI CK   C++ CPVD   E +  + +    CI CG C  +CPV
Sbjct: 125 YVIDDYLCIRCK--KCMKACPVDAITEKDGRVEVDQGRCIACGECLEKCPV 173



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 18/72 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCE 47
           +V   CI C    C EVCP D                     E    I    CI C  C 
Sbjct: 82  IVRGACIRCGF--CAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCKKCM 139

Query: 48  PECPVDAIKPDT 59
             CPVDAI    
Sbjct: 140 KACPVDAITEKD 151



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVD 53
           E C+ C    CV+ CP       E+  +   PD+C+ C  C   CP  
Sbjct: 263 EKCVQC--RLCVDECPSGAITYSEDEGIVRDPDKCLRCSTCYQTCPFG 308



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 13/58 (22%)

Query: 7   ENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           E CI C    C   CP                EG+ +  I    CI CG C   CP D
Sbjct: 45  EYCIGCG--ACTTACPAPGAIKLVRDTDTAEEEGQTYPVIVRGACIRCGFCAEVCPTD 100



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPG 62
           P++C+ C +C  ECP  AI    + G
Sbjct: 262 PEKCVQCRLCVDECPSGAITYSEDEG 287


>gi|313148174|ref|ZP_07810367.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides fragilis 3_1_12]
 gi|313136941|gb|EFR54301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides fragilis 3_1_12]
          Length = 387

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV---DAI 55
          +C  C  T C  VC        E+   FL   I+  +CI+CG+C   CPV   DAI
Sbjct: 9  DCCGC--TACASVCNKGAIIMQEDEQGFLYPHINTTQCINCGLCNKVCPVFRYDAI 62


>gi|302344645|ref|YP_003809174.1| nitroreductase [Desulfarculus baarsii DSM 2075]
 gi|301641258|gb|ADK86580.1| nitroreductase [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          T +  + CI C    CV  CP   F        +    CI CG C   CP  A+
Sbjct: 7  TVIDAQKCIGCG--RCVVTCPAQAFTLAAGKSVVSGQRCILCGHCLAVCPTGAV 58


>gi|295106564|emb|CBL04107.1| Fe-S-cluster-containing hydrogenase components 2 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 207

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   C+ VCP    Y+  + L +    C  C VC   CP  A+ P   
Sbjct: 51  CHQCEGAPCLAVCPEGAIYQERDRLQVDEARCTGCLVCALACPFGAVYPSAP 102


>gi|257790238|ref|YP_003180844.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489699|ref|ZP_07948203.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830251|ref|ZP_08163708.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257474135|gb|ACV54455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911293|gb|EFV32898.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487718|gb|EGC90156.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 210

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C  C++ +CV+VCP +  +  E+  + I  ++CI C  C   CP      + E 
Sbjct: 58  YFLPISCQHCENPECVKVCPTEASHVAEDGSIQIDKEKCIGCQFCVMACPYGVRYLNEEE 117


>gi|229816530|ref|ZP_04446829.1| hypothetical protein COLINT_03583 [Collinsella intestinalis DSM
          13280]
 gi|229807865|gb|EEP43668.1| hypothetical protein COLINT_03583 [Collinsella intestinalis DSM
          13280]
          Length = 84

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MTYVV--TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M + +   + CI C    CV+ CP       +       D C+ CG C+  CP  AI
Sbjct: 24 MAHPIIDADECIACGV--CVDACPAGVLELNDVATVADEDSCVACGACQDACPAGAI 78



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I  DECI CGVC   CP   ++ + 
Sbjct: 29 IDADECIACGVCVDACPAGVLELND 53


>gi|295659241|ref|XP_002790179.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides
           brasiliensis Pb01]
 gi|30351132|gb|AAP23044.1| ferredoxin-like iron-sulfur protein [Paracoccidioides brasiliensis]
 gi|226281884|gb|EEH37450.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides
           brasiliensis Pb01]
          Length = 229

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 185

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 186 ESP----------NAEYATETREELLYNKEKLLANGDKWE 215


>gi|26990820|ref|NP_746245.1| NADH dehydrogenase subunit I [Pseudomonas putida KT2440]
 gi|148546977|ref|YP_001267079.1| NADH dehydrogenase subunit I [Pseudomonas putida F1]
 gi|167034694|ref|YP_001669925.1| NADH dehydrogenase subunit I [Pseudomonas putida GB-1]
 gi|170721050|ref|YP_001748738.1| NADH dehydrogenase subunit I [Pseudomonas putida W619]
 gi|81733276|sp|Q88FH0|NUOI_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24985827|gb|AAN69709.1|AE016607_3 NADH dehydrogenase I, I subunit [Pseudomonas putida KT2440]
 gi|148511035|gb|ABQ77895.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida F1]
 gi|166861182|gb|ABY99589.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida GB-1]
 gi|169759053|gb|ACA72369.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida W619]
 gi|313498024|gb|ADR59390.1| NuoI [Pseudomonas putida BIRD-1]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMAEF 127


>gi|15597840|ref|NP_251334.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAO1]
 gi|107102164|ref|ZP_01366082.1| hypothetical protein PaerPA_01003214 [Pseudomonas aeruginosa PACS2]
 gi|116050631|ref|YP_790550.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984090|ref|YP_001347926.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PA7]
 gi|218891195|ref|YP_002440061.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa LESB58]
 gi|254235626|ref|ZP_04928949.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719]
 gi|254241074|ref|ZP_04934396.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192]
 gi|296388895|ref|ZP_06878370.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAb1]
 gi|313107683|ref|ZP_07793865.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016]
 gi|81783693|sp|Q9I0J4|NUOI_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122259754|sp|Q02ND6|NUOI_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918795|sp|A6V4E1|NUOI_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737408|sp|B7VAQ8|NUOI_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|9948713|gb|AAG06032.1|AE004693_3 NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PAO1]
 gi|115585852|gb|ABJ11867.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167557|gb|EAZ53068.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719]
 gi|126194452|gb|EAZ58515.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192]
 gi|150959248|gb|ABR81273.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PA7]
 gi|218771420|emb|CAW27187.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa LESB58]
 gi|310880367|gb|EFQ38961.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016]
          Length = 182

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMGEF 127


>gi|323491428|ref|ZP_08096612.1| hypothetical protein VIBR0546_18742 [Vibrio brasiliensis LMG 20546]
 gi|323314297|gb|EGA67377.1| hypothetical protein VIBR0546_18742 [Vibrio brasiliensis LMG 20546]
          Length = 228

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y+ E    I  H ++C+ CG C   CP  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIIDVHKEKCVGCGYCLAACPYQ 145


>gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 619

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C +VCPV     E +    I   +CI CG C  +C  DAI
Sbjct: 569 DKCKGCG--ACKKVCPVGAISGEKKEAHEIDAGKCIKCGSCIEKCKFDAI 616



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I PD+C  CG C+  CPV AI  + +   E
Sbjct: 566 IDPDKCKGCGACKKVCPVGAISGEKKEAHE 595


>gi|291523914|emb|CBK89501.1| Uncharacterized conserved protein [Eubacterium rectale DSM 17629]
 gi|291528625|emb|CBK94211.1| Uncharacterized conserved protein [Eubacterium rectale M104/1]
          Length = 202

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y V ++CI CK   C  VCP  C       + I+ + C+ CG C   CP   I+
Sbjct: 148 YFVGKDCIGCKL--CYSVCPQKCIDISSVPVTINQNHCLHCGRCAEICPKQCIE 199


>gi|282162803|ref|YP_003355188.1| putative ferredoxin [Methanocella paludicola SANAE]
 gi|282155117|dbj|BAI60205.1| putative ferredoxin [Methanocella paludicola SANAE]
          Length = 129

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ENC+ C    CV VCPV    +E +  + +    C+ CG C   CPV  I+
Sbjct: 77  ENCVHCG--ACVAVCPVGAIAFEYDWRVRMDEKACVQCGNCVTACPVKVIR 125



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
            + C+ CG C   CPV AI  + +
Sbjct: 75 DEENCVHCGACVAVCPVGAIAFEYD 99


>gi|297587688|ref|ZP_06946332.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia
           magna ATCC 53516]
 gi|297574377|gb|EFH93097.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia
           magna ATCC 53516]
          Length = 442

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 21/66 (31%)

Query: 7   ENCILCKHTDCVEVCPV------------DCFYEGENFLAIHPDECIDCGVCEPECP--- 51
           E CI C    CV+VCP+            +  +EG   + ++  +CI+CG C   CP   
Sbjct: 366 EPCIKC--AKCVDVCPIGLLPLFLQLKSLNGDFEGAEKMHLN--DCIECGTCSYVCPSNR 421

Query: 52  --VDAI 55
             V+AI
Sbjct: 422 PLVEAI 427


>gi|209695338|ref|YP_002263267.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
 gi|226735410|sp|B6EGH6|RNFB_ALISL RecName: Full=Electron transport complex protein rnfB
 gi|208009290|emb|CAQ79556.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
          Length = 194

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD    G   L  +   EC  C +C   CP D I+
Sbjct: 107 AFIHEDMCIGC--TKCIQACPVDAIVGGTKALHTVIEAECTGCDLCVAPCPTDCIE 160


>gi|194901136|ref|XP_001980108.1| GG20344 [Drosophila erecta]
 gi|195501171|ref|XP_002097689.1| GE26357 [Drosophila yakuba]
 gi|190651811|gb|EDV49066.1| GG20344 [Drosophila erecta]
 gi|194183790|gb|EDW97401.1| GE26357 [Drosophila yakuba]
          Length = 217

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|167561482|ref|ZP_02354398.1| ferredoxin [Burkholderia oklahomensis EO147]
 gi|167568712|ref|ZP_02361586.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 87

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPQD 62


>gi|170742519|ref|YP_001771174.1| NADH dehydrogenase subunit I [Methylobacterium sp. 4-46]
 gi|226737402|sp|B0ULL2|NUOI_METS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|168196793|gb|ACA18740.1| NADH-quinone oxidoreductase, chain I [Methylobacterium sp. 4-46]
          Length = 162

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 60 ERCIACKLCEAVCPAQAITIEAGP 83



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCG--MCQEACPVDAIVEGPNF 123


>gi|78355521|ref|YP_386970.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217926|gb|ABB37275.1| electron transport protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 201

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C   CP       +  L +    C+ C  C   CP  A++
Sbjct: 65  CRHCEDAPCAASCPAGAIRRKDGALVVEEARCVGCKTCMLACPFGAVE 112


>gi|11498862|ref|NP_070091.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649316|gb|AAB89980.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 369

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V +  CI C    C+  CP+       N     +  ++C+ CGVC P CPV+AI+     
Sbjct: 285 VDSSKCIACG--ICMLRCPMKAVKAKINREPANVEAEKCLGCGVCVPTCPVEAIELVERE 342

Query: 62  GLELW 66
            L+ W
Sbjct: 343 ELQEW 347


>gi|116750299|ref|YP_846986.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Syntrophobacter fumaroxidans MPOB]
 gi|116699363|gb|ABK18551.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Syntrophobacter fumaroxidans MPOB]
          Length = 185

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C    C+  C     +  E  + + I PD+CI+C  C   CP   I+   +
Sbjct: 43 CRHCDPAPCLLACLPGAIFRDEELDTVLIDPDKCINCASCAMACPFGVIRYHED 96


>gi|332662321|ref|YP_004445109.1| NAD(P)H-quinone oxidoreductase subunit I [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331135|gb|AEE48236.1| NAD(P)H-quinone oxidoreductase subunit I [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 176

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +          +GE  L           I+   CI CG+CE  
Sbjct: 71  ENCTACGL--CAVACPAEAITIVAEERKKGEEHLYREEKYAAVYDINMLRCIFCGLCEEA 128

Query: 50  CPVDAIK 56
           CP DAI 
Sbjct: 129 CPKDAIY 135


>gi|329962378|ref|ZP_08300382.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328530101|gb|EGF56986.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 277

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            E C  C +  CV+ CP     +G+    I  ++CI C  C   CP  A   DT 
Sbjct: 207 AELCTHCGY--CVKHCPAGAILKGDECNTI-AEKCIKCCACVKGCPQKARSYDTP 258



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             + C  CG C   CP  AI    E
Sbjct: 206 DAELCTHCGYCVKHCPAGAILKGDE 230


>gi|323697845|ref|ZP_08109757.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323457777|gb|EGB13642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 192

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK+  CV+ C      +      + I PD+C   G C   CP   I+ D
Sbjct: 65  PCQHCKNPQCVKACKAGAITKDPQNGIVRIDPDKCTGSGACIEACPYHVIQFD 117


>gi|218702738|ref|YP_002410367.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI39]
 gi|218372724|emb|CAR20599.1| formate-dependent nitrite reductase, 4Fe4S subunit [Escherichia
           coli IAI39]
          Length = 223

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDRAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|194442517|ref|YP_002042914.1| oxidoreductase AegA [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194401180|gb|ACF61402.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 157

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|154420549|ref|XP_001583289.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121917530|gb|EAY22303.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 499

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAI 55
            CI C    CV++CP      G +        +    C+ CG C   CP  AI
Sbjct: 133 ACIDC--YKCVDICPTGALTHGNHLQTFGHFGLRDSGCVSCGACVDVCPTKAI 183


>gi|117621271|ref|YP_856980.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562678|gb|ABK39626.1| 4Fe-4S binding domain protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 230

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP       + +  + ++PD C+ C  C   CP  
Sbjct: 100 SCQHCDNAPCVHVCPTGASHIRKEDGIVDVNPDLCVGCMYCLAACPYQ 147


>gi|329118705|ref|ZP_08247406.1| ferredoxin [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465208|gb|EGF11492.1| ferredoxin [Neisseria bacilliformis ATCC BAA-1200]
          Length = 83

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 ILIDEEHPETH 69


>gi|317476538|ref|ZP_07935785.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907281|gb|EFV28988.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 277

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C +  C   CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDTELCSHCGY--CAVHCPASAIKKGDE-CYTDAEKCIRCCACVKGCPQKARTFDTP 258


>gi|300114344|ref|YP_003760919.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Nitrosococcus watsonii C-113]
 gi|299540281|gb|ADJ28598.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nitrosococcus watsonii C-113]
          Length = 84

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I P  C +C        C   CPV+ 
Sbjct: 1  MALLITDECINCDV--CEPECPNGAISQGEEIYVIEPKLCTECVGHFETPQCVEVCPVEC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IIPD 62



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNGAISQGEE 29


>gi|299531510|ref|ZP_07044916.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          S44]
 gi|298720473|gb|EFI61424.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          S44]
          Length = 86

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y GE F  I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNDAIYMGEEFYEIDPHKCTECVGHFDEPQCVQICPVAC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I     P    +++       ++  +T  K
Sbjct: 59 I-----PVNPEYIESREVLFKKYELLTQAK 83


>gi|237795647|ref|YP_002863199.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str.
           657]
 gi|229262837|gb|ACQ53870.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 281

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C    C  +C  D          I P  C  CG C   CP++AIK + E   E +
Sbjct: 65  DICIKCG--KCKSICKFDAI----ENFKIDPFLCEGCGTCTLICPLNAIKLEDEKNAETF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I  D CI CG C+  C  DAI+
Sbjct: 62 IDKDICIKCGKCKSICKFDAIE 83


>gi|237728156|ref|ZP_04558637.1| cytochrome c-type biogenesis protein [Citrobacter sp. 30_2]
 gi|226910167|gb|EEH96085.1| cytochrome c-type biogenesis protein [Citrobacter sp. 30_2]
          Length = 223

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    + +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|206577946|ref|YP_002236052.1| protein AegA [Klebsiella pneumoniae 342]
 gi|288933050|ref|YP_003437109.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|290511844|ref|ZP_06551212.1| electron transporter HydN [Klebsiella sp. 1_1_55]
 gi|206567004|gb|ACI08780.1| protein AegA [Klebsiella pneumoniae 342]
 gi|288887779|gb|ADC56097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|289775634|gb|EFD83634.1| electron transporter HydN [Klebsiella sp. 1_1_55]
          Length = 161

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 16/49 (32%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
              C  C+   C  VCP        +   +    CI C  C   CP  A
Sbjct: 55  ATACRQCEDAPCASVCPQGAIQRDNDVWWVDQRRCIGCKSCMVACPYGA 103


>gi|116751281|ref|YP_847968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700345|gb|ABK19533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 358

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI-----KPD-- 58
           + C  C    C +  C V+   +  +F  I  D CI CG+C   CP +AI     +P+  
Sbjct: 275 DKCSHCG--ICADERCQVEAIRDEGDFYRIVGDRCIGCGLCATTCPEEAIALMRRQPEEP 332

Query: 59  --TEPGLELWLK 68
             T    E W++
Sbjct: 333 GTTPETEEAWME 344



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 34  AIHPDECIDCGVCEPE-CPVDAIKPD 58
            I PD+C  CG+C  E C V+AI+ +
Sbjct: 271 EIDPDKCSHCGICADERCQVEAIRDE 296


>gi|117925006|ref|YP_865623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Magnetococcus sp. MC-1]
 gi|117608762|gb|ABK44217.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 243

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV+VCP +  +  ++ L  +    CI C  C   CP  A             
Sbjct: 102 CNHCENPPCVDVCPTNASFIRKDGLVLVDKHRCIGCRYCMIACPYKARSLVYHENTTPKD 161

Query: 68  KINSE 72
           ++N E
Sbjct: 162 QLNRE 166


>gi|326791477|ref|YP_004309298.1| PAS/PAC sensor protein [Clostridium lentocellum DSM 5427]
 gi|326542241|gb|ADZ84100.1| putative PAS/PAC sensor protein [Clostridium lentocellum DSM
          5427]
          Length = 569

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV  CPV+          I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YACVRACPVNAIQVQAEQAKIVKERCIGCGKCLKVCPKNA 54


>gi|284009327|emb|CBA76492.1| NADH-quinone oxidoreductase chain I [Arsenophonus nasoniae]
          Length = 180

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVVCPVGCISLQKAEQPDGRWYPEFFQINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 624

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C  + C   CPVD      +    I  D+CI CG C   C  +A++
Sbjct: 574 DLCKGC--SLCARKCPVDAISGKVKEPFVIDQDKCIKCGACYEACKFNAVE 622



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     E      I+PD C  C +C  +CPVDAI
Sbjct: 558 CPAG-VCEALKSYKINPDLCKGCSLCARKCPVDAI 591


>gi|153811524|ref|ZP_01964192.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174]
 gi|149832265|gb|EDM87350.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174]
          Length = 204

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + + CI CK   C  VCP  C       + I+ + C+ CG C   CP   I+
Sbjct: 148 YFIGKECIGCKL--CCSVCPQKCIDISSVPVTINQNHCLHCGRCAEICPKQCIE 199


>gi|53718157|ref|YP_107143.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|53724088|ref|YP_104608.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76809059|ref|YP_332163.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121599810|ref|YP_991443.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124384667|ref|YP_001027481.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126439656|ref|YP_001057618.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 668]
 gi|126450276|ref|YP_001082447.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|126453640|ref|YP_001064864.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106a]
 gi|134279445|ref|ZP_01766157.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 305]
 gi|167718011|ref|ZP_02401247.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei DM98]
 gi|167737028|ref|ZP_02409802.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 14]
 gi|167814137|ref|ZP_02445817.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 91]
 gi|167822662|ref|ZP_02454133.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 9]
 gi|167844233|ref|ZP_02469741.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei B7210]
 gi|167892743|ref|ZP_02480145.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 7894]
 gi|167901239|ref|ZP_02488444.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei NCTC 13177]
 gi|167909457|ref|ZP_02496548.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 112]
 gi|167917485|ref|ZP_02504576.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei BCC215]
 gi|217419688|ref|ZP_03451194.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 576]
 gi|226199554|ref|ZP_03795111.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pakistan 9]
 gi|238561330|ref|ZP_00442188.2| iron-sulfur cluster-binding protein [Burkholderia mallei GB8
          horse 4]
 gi|242316665|ref|ZP_04815681.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106b]
 gi|254174705|ref|ZP_04881366.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|254181869|ref|ZP_04888466.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1655]
 gi|254187803|ref|ZP_04894315.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pasteur 52237]
 gi|254196729|ref|ZP_04903153.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei S13]
 gi|254201695|ref|ZP_04908059.1| ferredoxin [Burkholderia mallei FMH]
 gi|254207029|ref|ZP_04913380.1| ferredoxin [Burkholderia mallei JHU]
 gi|254260260|ref|ZP_04951314.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1710a]
 gi|254296079|ref|ZP_04963536.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 406e]
 gi|254357508|ref|ZP_04973782.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|52208571|emb|CAH34507.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|52427511|gb|AAU48104.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76578512|gb|ABA47987.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|121228620|gb|ABM51138.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124292687|gb|ABN01956.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126219149|gb|ABN82655.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126227282|gb|ABN90822.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106a]
 gi|126243146|gb|ABO06239.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|134248645|gb|EBA48727.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 305]
 gi|147747589|gb|EDK54665.1| ferredoxin [Burkholderia mallei FMH]
 gi|147752571|gb|EDK59637.1| ferredoxin [Burkholderia mallei JHU]
 gi|148026572|gb|EDK84657.1| ferredoxin [Burkholderia mallei 2002721280]
 gi|157805773|gb|EDO82943.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 406e]
 gi|157935483|gb|EDO91153.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pasteur 52237]
 gi|160695750|gb|EDP85720.1| ferredoxin [Burkholderia mallei ATCC 10399]
 gi|169653472|gb|EDS86165.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei S13]
 gi|184212407|gb|EDU09450.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1655]
 gi|217396992|gb|EEC37008.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 576]
 gi|225928435|gb|EEH24465.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei Pakistan 9]
 gi|238524794|gb|EEP88225.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8
          horse 4]
 gi|242139904|gb|EES26306.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1106b]
 gi|254218949|gb|EET08333.1| ferredoxin, 4Fe-4S [Burkholderia pseudomallei 1710a]
          Length = 88

 Score = 52.5 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P++C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPNKCTECVGHFDEPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPQD 62


>gi|325263205|ref|ZP_08129940.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5]
 gi|324031598|gb|EGB92878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5]
          Length = 258

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           E+C  C    CV VCP +    E          +CIDC  C   CP  A
Sbjct: 184 ESCTGCG--TCVSVCPTEAIDRENPRQT--DETKCIDCFACVKNCPAHA 228



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I  + C  CG C   CP +AI  +  
Sbjct: 181 IADESCTGCGTCVSVCPTEAIDRENP 206


>gi|302348178|ref|YP_003815816.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans
           345-15]
 gi|302328590|gb|ADL18785.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans
           345-15]
          Length = 196

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 22/103 (21%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------------GENFLAIHPDECIDCGVCEPEC 50
           + + CI C    C  +CP                     + +  I+ + CI CG C   C
Sbjct: 62  IFDKCISC--ASCARICPARAMKMVTMEVKDKKLNRAMKKKYPVINYNRCIFCGYCVDVC 119

Query: 51  PVDAIKPDTEPG-----LELWLKINSEYATQWPNITTKKESLP 88
           P +A+            ++  + +N E   + P   T KE +P
Sbjct: 120 PTEALYHVPYHDLVYLNMQDMI-LNVEEFQKEPEFVTAKEGVP 161


>gi|288942375|ref|YP_003444615.1| RnfABCDGE type electron transport complex subunit B [Allochromatium
           vinosum DSM 180]
 gi|288897747|gb|ADC63583.1| electron transport complex, RnfABCDGE type, B subunit
           [Allochromatium vinosum DSM 180]
          Length = 178

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKP-DT 59
            +V    CI C  T C + CP D      N +  +  D CI C +C   CP + I+    
Sbjct: 103 AHVNEGLCIGC--TKCFKRCPTDAIMGANNMIHVVFADACIGCELCSEICPTEGIEMRPL 160

Query: 60  EPGLELWL 67
            P L+ W 
Sbjct: 161 APTLQNWY 168


>gi|268678875|ref|YP_003303306.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sulfurospirillum deleyianum DSM 6946]
 gi|268616906|gb|ACZ11271.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sulfurospirillum deleyianum DSM 6946]
          Length = 83

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++TE CI C    C + CP     E +    I PD C +C        C   CPV+ 
Sbjct: 1  MSLMITEECIACD--ACRDECPNGAIEESDPIYIIDPDVCTECVGHYDEPACISVCPVEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|218439089|ref|YP_002377418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
 gi|218171817|gb|ACK70550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7424]
          Length = 128

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVD 53
          M+Y +T  CI C    C+  CP     +  + L I    C DC        C   CP +
Sbjct: 1  MSYTITHQCIGCD--RCLVQCPTGAIEKVNDVLVIDSTLCNDCLGYYGTAQCASICPTN 57


>gi|168465031|ref|ZP_02698923.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195632373|gb|EDX50857.1| protein AegA [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 157

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|154149965|ref|YP_001403583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Candidatus Methanoregula boonei 6A8]
 gi|153998517|gb|ABS54940.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanoregula boonei 6A8]
          Length = 118

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           E CI C    C EVCP   F EGE    + +P  C++CG C   CPV AI
Sbjct: 14 AEKCINC--RRCTEVCPHGVFAEGEKTAVLGNPRACMECGACAKNCPVQAI 62


>gi|153953474|ref|YP_001394239.1| hypothetical protein CKL_0840 [Clostridium kluyveri DSM 555]
 gi|219854096|ref|YP_002471218.1| hypothetical protein CKR_0753 [Clostridium kluyveri NBRC 12016]
 gi|146346355|gb|EDK32891.1| Hypothetical protein CKL_0840 [Clostridium kluyveri DSM 555]
 gi|219567820|dbj|BAH05804.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 178

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    CV VCPV    E    + +  D+CI C  C   C V A+
Sbjct: 64  CRHCTEAFCVNVCPVKAIVENHGSIFVQEDKCIGCKNCMLVCAVGAV 110


>gi|119897052|ref|YP_932265.1| ferredoxin [Azoarcus sp. BH72]
 gi|119669465|emb|CAL93378.1| probable ferredoxin [Azoarcus sp. BH72]
          Length = 85

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP     +G+    I P++C +C        C+  CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPECPNGAISQGDEIYQIDPNKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPDTEPG------LELWLKINSE 72
          I  D +        ++ +LK+++ 
Sbjct: 59 IPHDPDHQETKDQLMQKFLKLSAA 82


>gi|313906031|ref|ZP_07839384.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
 gi|313469144|gb|EFR64493.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium cellulosolvens 6]
          Length = 601

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 15/81 (18%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V  + C+ CK   C+++ CP     +G     I P++C+ CGVC+  C +DAI      
Sbjct: 526 HVEEDKCVGCK--SCMKIGCPSLSMKDG--KSVIDPNQCVGCGVCQQMCKLDAILDSD-- 579

Query: 62  GLELWLKINSEYATQWPNITT 82
                   N+ +A+  P I+ 
Sbjct: 580 --------NNPHASIRPGISR 592


>gi|312222247|emb|CBY02187.1| hypothetical protein [Leptosphaeria maculans]
          Length = 230

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLA---------IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E  +          I   +CI CG+C+  CPVDAI
Sbjct: 129 ERCIACKL--CEAICPAQAITIEAEERMDGSRRTTRYDIDMTKCIYCGLCQESCPVDAI 185



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           PV   + GE+ L  +P   + CI C +CE  CP  AI  + E  ++
Sbjct: 110 PVSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEERMD 155



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG N   
Sbjct: 170 CIYCGL--CQESCPVDAIVEGPNTEY 193


>gi|257469060|ref|ZP_05633154.1| dihydroorotate dehydrogenase family protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063306|ref|ZP_07927791.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313688982|gb|EFS25817.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 365

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           VV+E+ CI C    C  VC        E    I+ D+C  CGVC  +CP  A
Sbjct: 311 VVSEDKCIGCG--ICKTVCGYKAIEIVEKKAVINKDKCFGCGVCVSKCPTKA 360



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
            +  D+CI CG+C+  C   AI+
Sbjct: 311 VVSEDKCIGCGICKTVCGYKAIE 333


>gi|206563028|ref|YP_002233791.1| putative dimethyl sulfoxide reductase subunit [Burkholderia
           cenocepacia J2315]
 gi|198039068|emb|CAR55031.1| putative dimethyl sulfoxide reductase subunit [Burkholderia
           cenocepacia J2315]
          Length = 247

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    F    + +  +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASFKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|157826248|ref|YP_001493968.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford]
 gi|226737411|sp|A8GPY5|NUOI_RICAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157800206|gb|ABV75460.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford]
          Length = 159

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|283046736|ref|NP_001164315.1| NADH:ubiquinone reductase 23kD subunit precursor [Tribolium
           castaneum]
 gi|270009224|gb|EFA05672.1| hypothetical protein TcasGA2_TC015022 [Tribolium castaneum]
          Length = 212

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 37.1 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 111 ERCIACKLCEAICPAQAITIEAEERAD 137



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|150015601|ref|YP_001307855.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149902066|gb|ABR32899.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 263

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV  CP       EN    I  +ECI CG C   CP +AI
Sbjct: 6  VNQDKCIKCGL--CVNECPERVLEPSENGPKEICGEECISCGHCVAICPREAI 56



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          N + ++ D+CI CG+C  ECP   ++P      E
Sbjct: 2  NLITVNQDKCIKCGLCVNECPERVLEPSENGPKE 35


>gi|320335010|ref|YP_004171721.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Deinococcus maricopensis DSM 21211]
 gi|319756299|gb|ADV68056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Deinococcus maricopensis DSM 21211]
          Length = 326

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VV + CI C    C  VCP +         GE  L +    C  C  C   CP  AI   
Sbjct: 248 VVDDTCIDC--PVCANVCPTNAITRDFQPTGEVTLTLDLAACTSCNACAQSCPPQAITLQ 305

Query: 59  TEPGLELWLK 68
            E  +E + +
Sbjct: 306 PEWPIEAFGE 315



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C   CP D      + + I+   C  CG+C   CP  A++ D 
Sbjct: 36 ACARACPHDAVILT-HTVEINEANCTGCGLCVQACPSGALEFDV 78


>gi|312143536|ref|YP_003994982.1| iron-sulfur protein [Halanaerobium sp. 'sapolanicus']
 gi|311904187|gb|ADQ14628.1| putative iron-sulfur protein [Halanaerobium sp. 'sapolanicus']
          Length = 420

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C+ +CPV+   E E+     + +  + C+ CGVC   CP + IK
Sbjct: 292 CSQC--QKCLSICPVNAISEIEDEEGKKIVVDKELCLGCGVCLRTCPENNIK 341


>gi|297527527|ref|YP_003669551.1| ABC transporter related protein [Staphylothermus hellenicus DSM
          12710]
 gi|297256443|gb|ADI32652.1| ABC transporter related protein [Staphylothermus hellenicus DSM
          12710]
          Length = 601

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 17 CVEVCPVD------CFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C+  CPV+            +     I+ D CI CG+C  +CP +AI     P  
Sbjct: 21 CIRFCPVNKTKHKKAIELSPDGKHAVIYEDICIGCGICVKKCPFNAISIVNLPDE 75


>gi|257437596|ref|ZP_05613351.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257199903|gb|EEU98187.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 251

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V  NCI C    C   CPV      +NF    P +CI C  C   CPV A
Sbjct: 175 TVNANCISCGL--CARECPVGAISY-DNFTVTDPSKCITCMRCVSRCPVHA 222



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 40  CIDCGVCEPECPVDAIKPD 58
           CI CG+C  ECPV AI  D
Sbjct: 180 CISCGLCARECPVGAISYD 198


>gi|226499536|ref|NP_001148902.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
 gi|195623106|gb|ACG33383.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
          Length = 223

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEERED 148



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNF 184


>gi|126465802|ref|YP_001040911.1| ATPase RIL [Staphylothermus marinus F1]
 gi|126014625|gb|ABN70003.1| ABC transporter related [Staphylothermus marinus F1]
          Length = 601

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 17 CVEVCPVD------CFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C+  CPV+            +     I+ D CI CG+C  +CP +AI     P  
Sbjct: 21 CIRFCPVNKTKRKKAIELSPDGKHAVIYEDICIGCGICVKKCPFNAISIVNLPDE 75


>gi|157821497|ref|NP_001099792.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Rattus norvegicus]
 gi|149061895|gb|EDM12318.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|149061896|gb|EDM12319.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|149061897|gb|EDM12320.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|165971299|gb|AAI58792.1| Ndufs8 protein [Rattus norvegicus]
          Length = 212

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAICPAQAITIEAEPRAD 137



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|148259940|ref|YP_001234067.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
 gi|326403106|ref|YP_004283187.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
 gi|146401621|gb|ABQ30148.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
 gi|325049967|dbj|BAJ80305.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
          Length = 163

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 118



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 62 ERCIACKLCEAICPAQAITIEAEPRED 88



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGL--CEEACPVDAIVEGPNF 124


>gi|305666894|ref|YP_003863181.1| nrfC protein [Maribacter sp. HTCC2170]
 gi|88709119|gb|EAR01353.1| nrfC protein [Maribacter sp. HTCC2170]
          Length = 177

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +E C  C++  CV  CP       +G   L    DECI CG C   CP DA
Sbjct: 54  SERCNHCENAPCVRCCPTGASHIVDGGIVLV-TADECIGCGACIESCPYDA 103



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 14/65 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V  + CI C    C+E CP D  Y+  +      D+C  C           C   CP   
Sbjct: 84  VTADECIGCG--ACIESCPYDARYQHPDGYV---DKCTFCHHRLEKGQLPACVEVCPTKC 138

Query: 55  IKPDT 59
           +    
Sbjct: 139 MYFGD 143


>gi|328952548|ref|YP_004369882.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452872|gb|AEB08701.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1503

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 7    ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
            E C++C    C   CP       E+    I P EC  CG C   CP
Sbjct: 1424 EKCVVC--MTCARTCPFGAPKVAEDGFIDIDPAECHGCGNCASACP 1467


>gi|310791703|gb|EFQ27230.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001]
          Length = 226

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 182

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 183 ESP----------NAEYATE 192


>gi|264676947|ref|YP_003276853.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          CNB-2]
 gi|262207459|gb|ACY31557.1| NADH-ubiquinone oxidoreductase chain 9 [Comamonas testosteroni
          CNB-2]
          Length = 86

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y GE F  I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNDAIYMGEEFYEIDPHKCTECVGHFDEPQCVQICPVAC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I     P    +++       ++  +T  K
Sbjct: 59 I-----PVNPEYIESREVLFKKYEQLTQAK 83


>gi|119872161|ref|YP_930168.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum islandicum DSM 4184]
 gi|119673569|gb|ABL87825.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum islandicum DSM 4184]
          Length = 96

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP + I+ +  
Sbjct: 32 EQCRKCEKKPCTYMCPAKCYVQQGDYVVLSTEACVECGTCRVVCPYNNIEWNYP 85


>gi|94498903|ref|ZP_01305441.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
 gi|94428535|gb|EAT13507.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
          Length = 195

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 115 DECIGC--TKCIQACPVDAILGAAKQMHTVIEDECTGCDLCLDPCPVDCI 162



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  DECI C  C   CPVDAI
Sbjct: 111 VIREDECIGCTKCIQACPVDAI 132


>gi|15644905|ref|NP_207075.1| ferredoxin [Helicobacter pylori 26695]
 gi|188527083|ref|YP_001909770.1| ferredoxin [Helicobacter pylori Shi470]
 gi|208434223|ref|YP_002265889.1| ferrodoxin [Helicobacter pylori G27]
 gi|210134475|ref|YP_002300914.1| ferredoxin [Helicobacter pylori P12]
 gi|217031497|ref|ZP_03437002.1| hypothetical protein HPB128_21g55 [Helicobacter pylori B128]
 gi|217033432|ref|ZP_03438862.1| hypothetical protein HP9810_1g46 [Helicobacter pylori 98-10]
 gi|254778980|ref|YP_003057085.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori B38]
 gi|298736776|ref|YP_003729306.1| ferredoxin [Helicobacter pylori B8]
 gi|308182451|ref|YP_003926578.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          PeCan4]
 gi|2313367|gb|AAD07340.1| ferredoxin [Helicobacter pylori 26695]
 gi|188143323|gb|ACD47740.1| ferredoxin [Helicobacter pylori Shi470]
 gi|208432152|gb|ACI27023.1| ferrodoxin [Helicobacter pylori G27]
 gi|210132443|gb|ACJ07434.1| ferredoxin [Helicobacter pylori P12]
 gi|216944137|gb|EEC23565.1| hypothetical protein HP9810_1g46 [Helicobacter pylori 98-10]
 gi|216946697|gb|EEC25293.1| hypothetical protein HPB128_21g55 [Helicobacter pylori B128]
 gi|254000891|emb|CAX28827.1| Putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori B38]
 gi|261837723|gb|ACX97489.1| ferrodoxin [Helicobacter pylori 51]
 gi|297379499|gb|ADI34386.1| Ferredoxin [Helicobacter pylori v225d]
 gi|298355970|emb|CBI66842.1| ferredoxin [Helicobacter pylori B8]
 gi|308061630|gb|ADO03518.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          Cuz20]
 gi|308064636|gb|ADO06528.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          PeCan4]
 gi|315586271|gb|ADU40652.1| ferredoxin [Helicobacter pylori 35A]
 gi|317012119|gb|ADU82727.1| putative 4Fe-4S ferredoxin-type protein [Helicobacter pylori
          Lithuania75]
 gi|317179328|dbj|BAJ57116.1| ferredoxin [Helicobacter pylori F30]
 gi|332673118|gb|AEE69935.1| ferredoxin [Helicobacter pylori 83]
          Length = 84

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECPVD 53
          M+ +V + CI C    C E CP +   EG+    I PD C +C         C   CPVD
Sbjct: 1  MSLLVNDECIACD--ACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVD 58

Query: 54 AIKPD 58
          AI PD
Sbjct: 59 AILPD 63



 Score = 33.6 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI C  C  ECP +AI+    
Sbjct: 7  DECIACDACREECPSEAIEEGDP 29


>gi|84516958|ref|ZP_01004315.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
 gi|84509076|gb|EAQ05536.1| iron-sulfur cluster-binding protein [Loktanella vestfoldensis
           SKA53]
          Length = 253

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI C +C   CP  A + D + G
Sbjct: 81  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNEADCIGCSLCAWACPYGARELDAKAG 137


>gi|269216297|ref|ZP_06160151.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
 gi|269130556|gb|EEZ61634.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Slackia
           exigua ATCC 700122]
          Length = 205

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA-----IKPD 58
           V   C  C++  C +VCP    Y+ E     I  D+CI C  C   CP +A      +PD
Sbjct: 61  VPLACQHCENPACQKVCPTGATYKDEKGRVEIDYDKCIGCRFCMAACPYNARVFNWSEPD 120

Query: 59  TEPGLE 64
            +P  +
Sbjct: 121 HDPDFQ 126


>gi|168206256|ref|ZP_02632261.1| nitroreductase family protein [Clostridium perfringens E str.
          JGS1987]
 gi|170662298|gb|EDT14981.1| nitroreductase family protein [Clostridium perfringens E str.
          JGS1987]
          Length = 272

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V T  CI C  T C++ C V      +    I  + CI+CG C   CP +A+    
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMVDGKAHIKNESCIECGHCIAICPKEAVSDSD 57


>gi|119509218|ref|ZP_01628368.1| transcriptional regulator [Nodularia spumigena CCY9414]
 gi|119466060|gb|EAW46947.1| transcriptional regulator [Nodularia spumigena CCY9414]
          Length = 538

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M Y +   NC+ C   +C   CP        +   I P+ C +C G      C   CP +
Sbjct: 1  MPYTIPNNNCVGCD--NCRPQCPTGAIKIENDEYWIDPNLCNNCEGYYPEPQCVIVCPTN 58

Query: 54 AIKP 57
          +  P
Sbjct: 59 SPIP 62



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            I  + C+ C  C P+CP  AIK + +   E W+  N
Sbjct: 3  YTIPNNNCVGCDNCRPQCPTGAIKIEND---EYWIDPN 37


>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 597

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M Y V    C  C    C + CP+ C   GE      I   +C  CGVC  +CP  AI
Sbjct: 540 MKYTVDASKCKSCG--ICAKACPMGCIK-GEKKVPYVIDNSKCAKCGVCIEKCPFKAI 594



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
           CP     +      +   +C  CG+C   CP+  IK + +     ++  NS+ A 
Sbjct: 531 CPAG-VCKSMMKYTVDASKCKSCGICAKACPMGCIKGEKKVP---YVIDNSKCAK 581


>gi|66773136|ref|NP_001019573.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8b [Danio rerio]
 gi|66267262|gb|AAH95111.1| Zgc:109991 [Danio rerio]
          Length = 210

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAVCPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNFEY 173



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 109 ERCIACKLCEAVCPAQAITIEAE 131


>gi|257076190|ref|ZP_05570551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroplasma
          acidarmanus fer1]
          Length = 88

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V TE C +C    C++VCP   + E  EN +++H + C++CG     CP  A++      
Sbjct: 22 VNTEMCKICVDKPCIKVCPAGTYEEDKENGISVHYERCLECGAALYACPFGALQFKYPEK 81

Query: 63 LELWL 67
             ++
Sbjct: 82 GVSYI 86


>gi|68171162|ref|ZP_00544570.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88657739|ref|YP_507496.1| NADH dehydrogenase subunit I [Ehrlichia chaffeensis str. Arkansas]
 gi|115502529|sp|Q2GGD7|NUOI_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|67999432|gb|EAM86073.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599196|gb|ABD44665.1| NADH dehydrogenase I, I subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 169

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 68  ERCIACKL--CEAICPAQAITIEAQERDDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 124



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 109 CIYCGF--CQEACPVDAIVEGPNFEY 132



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 68 ERCIACKLCEAICPAQAITIEAQERDD 94


>gi|319957641|ref|YP_004168904.1| 4fe-4S ferredoxin [Nitratifractor salsuginis DSM 16511]
 gi|319420045|gb|ADV47155.1| 4Fe-4S ferredoxin [Nitratifractor salsuginis DSM 16511]
          Length = 83

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C E CP +   E +    I PD C +C        C   CPVD 
Sbjct: 1  MALMITDECIACD--ACREECPSEAIEENDPIYIIDPDRCTECVGFFDEPQCIAVCPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|307133274|ref|YP_003885290.1| Electron transport protein hydN [Dickeya dadantii 3937]
 gi|306530803|gb|ADN00734.1| Electron transport protein hydN [Dickeya dadantii 3937]
          Length = 177

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C  VCP D   + ++ + +    CI C  C   CP  AI   T P  + 
Sbjct: 57  CHQCENAPCASVCPHDALVQHQDSIQVISSRCIGCKSCVIACPFGAINVVTRPSDDE 113


>gi|300313426|ref|YP_003777518.1| [4Fe-4S]-type ferredoxin [Herbaspirillum seropedicae SmR1]
 gi|300076211|gb|ADJ65610.1| [4Fe-4S]-type ferredoxin protein [Herbaspirillum seropedicae
          SmR1]
          Length = 86

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +  Y G     I PD+C +C        C+  CPV  
Sbjct: 1  MALMITDDCINCDV--CEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|167534830|ref|XP_001749090.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772514|gb|EDQ86165.1| predicted protein [Monosiga brevicollis MX1]
          Length = 204

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGE---------NFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI
Sbjct: 103 ERCIACKL--CEAVCPAQAITIETEPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 159



 Score = 40.1 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  +TEP  +
Sbjct: 103 ERCIACKLCEAVCPAQAITIETEPRED 129



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 144 CIFCGF--CQEACPVDAIVEGPNFEY 167


>gi|161616737|ref|YP_001590702.1| hypothetical protein SPAB_04556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366101|gb|ABX69869.1| hypothetical protein SPAB_04556 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 157

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|148642371|ref|YP_001272884.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551388|gb|ABQ86516.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
          Length = 347

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD 53
           CI CK   C++ CPV   + E +  + ++P +CI CG C   CPV+
Sbjct: 132 CIRCK--KCMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCPVN 175



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 18/69 (26%)

Query: 8   NCILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCEPECP 51
            CI C    C EVCP +                     +    I    CI C  C  +CP
Sbjct: 86  ACIRCGF--CAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCP 143

Query: 52  VDAIKPDTE 60
           V AI  + +
Sbjct: 144 VGAIHVEDD 152



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 4   VVTENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ E CI C    C+  CP            D   EG  +  I+   CI CG C   CP 
Sbjct: 42  VIKEYCIGCG--ACISSCPSPNAIKLVRDEDDETKEGVTYPIINKSACIRCGFCAEVCPT 99

Query: 53  D 53
           +
Sbjct: 100 E 100



 Score = 36.7 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +E C  C    C+  CP       E  + +  + ++C+ C +C   CP   IK 
Sbjct: 263 SETCKKC--QMCIPDCPTKAISFDEKNDTIVRNENKCLRCSICYQSCPFSTIKY 314


>gi|114706714|ref|ZP_01439614.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
 gi|114537662|gb|EAU40786.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
          Length = 679

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V    C LC    CV  CPVD      +   L      C+ CG+C   CP +AI  +  
Sbjct: 515 HVDKNACTLC--MACVSACPVDALRANPDKPQLRFVESACVQCGICSATCPENAITLEAR 572



 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
                T C++VCP        + + I    C  CG C   CP  A+  
Sbjct: 281 RKTGCTKCIDVCPPGAITPAGDEVLIDTAICGGCGNCAAHCPTGAVSY 328



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           + +  + C  C  C   CPVDA++ + +     +++
Sbjct: 514 IHVDKNACTLCMACVSACPVDALRANPDKPQLRFVE 549


>gi|110803341|ref|YP_698302.1| nitroreductase family protein [Clostridium perfringens SM101]
 gi|110683842|gb|ABG87212.1| nitroreductase family protein [Clostridium perfringens SM101]
          Length = 272

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V T  CI C  T C++ C V      +    I  + CI+CG C   CP +A+    
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMVDGKAHIKNESCIECGHCIAICPKEAVSDSD 57


>gi|332159501|ref|YP_004424780.1| putative ATPase RIL [Pyrococcus sp. NA2]
 gi|331034964|gb|AEC52776.1| putative ATPase RIL [Pyrococcus sp. NA2]
          Length = 589

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIK- 56
          + C    C H  C  VCPV+          E  N   I    C  CG+C  +CP  AI  
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNKPIIQEASCTGCGICVHKCPFKAISI 68

Query: 57 ----PDTEPGLELWLKINSEYATQWPNI 80
                 E        IN+    + P +
Sbjct: 69 VNLPEQLEEDCVHRYGINAFVLYRLPVV 96


>gi|260598698|ref|YP_003211269.1| NADH dehydrogenase subunit I [Cronobacter turicensis z3032]
 gi|260217875|emb|CBA32420.1| NADH-quinone oxidoreductase subunit I [Cronobacter turicensis
           z3032]
          Length = 211

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 89  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 146

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 147 LTPDFELGEF 156


>gi|254481086|ref|ZP_05094332.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine
           gamma proteobacterium HTCC2148]
 gi|214038881|gb|EEB79542.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine
           gamma proteobacterium HTCC2148]
          Length = 175

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP +AI+
Sbjct: 53  ERCVACNL--CAVACPVDCIALQQGVKEDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQ 110


>gi|195108159|ref|XP_001998660.1| GI24093 [Drosophila mojavensis]
 gi|193915254|gb|EDW14121.1| GI24093 [Drosophila mojavensis]
          Length = 216

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 115 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 171



 Score = 37.1 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 115 ERCIACKLCEAICPAQAITIEAEERAD 141



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 156 CIYCGF--CQEACPVDAIVEGPNF 177


>gi|157374447|ref|YP_001473047.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316821|gb|ABV35919.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y  + +C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D
Sbjct: 63  AYYTSISCNHCSEPVCVKACPTGAMHKRSKDGLVHVSSDLCIGCSSCAKACPYDAPQLD 121


>gi|20094339|ref|NP_614186.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19887398|gb|AAM02116.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 139

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C  T C  VCP          + +  +ECI CG C   CPV A++  ++ G  
Sbjct: 83  DRCLHC--TACHSVCPTGAIELKGVEVELDDEECIVCGSCTEICPVGALRIASKEGER 138



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E E  L    D C+ C  C   CP  AI+
Sbjct: 73  EIEKTLVRDEDRCLHCTACHSVCPTGAIE 101


>gi|190348547|gb|EDK41017.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 233

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 132 ERCIACKL--CEAICPAQAITIEAEERADGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 188


>gi|153872014|ref|ZP_02001030.1| Thiosulfate reductase subunit B [Beggiatoa sp. PS]
 gi|152071520|gb|EDN68970.1| Thiosulfate reductase  subunit B [Beggiatoa sp. PS]
          Length = 247

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           C  C    C+E CP    Y+ E+ + +  D  C  C +C P CP DA
Sbjct: 60  CQHCDDAPCIEACPSGAAYKREDGMVLQDDAICSGCELCVPACPYDA 106


>gi|158319262|ref|YP_001511769.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158139461|gb|ABW17773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 363

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          + C  CK       CPV           +  + C  CG+C   CP  AI    +  ++
Sbjct: 31 QRCTECKDA-----CPVGAICMDNKIAHVDEESCKGCGICRAICPSQAISLKKDDEIK 83



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V +NC  C    C   CP   +    ++G   ++ +   C  CG+CE  CP  A+  DT
Sbjct: 254 VHDNCSSCGL--CQTTCPSKAWKVQKHKGHVTISHNARLCTSCGLCEDLCPQKALSKDT 310


>gi|91772370|ref|YP_565062.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91711385|gb|ABE51312.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanococcoides
           burtonii DSM 6242]
          Length = 128

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           E C+ C    C+ VCPV  F   +++ L +  D+CI CG C   CP +A
Sbjct: 77  EECVECG--ACISVCPVGVFSFADDWSLEVDTDKCIQCGTCLTMCPHNA 123



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 36 HPDECIDCGVCEPECPVD 53
            +EC++CG C   CPV 
Sbjct: 75 DEEECVECGACISVCPVG 92


>gi|323703766|ref|ZP_08115405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531290|gb|EGB21190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 368

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C    C + CP      GE+    I  + C+ CG C   CP  AI+ + +   ++
Sbjct: 193 EKCTGC--RKCHQWCPAGAISMGEDKKSFIAAELCMGCGECTVSCPFGAIEVNWKTEPDV 250

Query: 66  WLKINSEY 73
             +  +EY
Sbjct: 251 IQEKIAEY 258



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           I  ++C  C  C   CP  AI        + ++   +E        T             
Sbjct: 190 IDLEKCTGCRKCHQWCPAGAISMG--EDKKSFIA--AELCMGCGECTVSCPFGAIEVNWK 245

Query: 95  GVKQKYEKYFSP 106
                 ++  + 
Sbjct: 246 TEPDVIQEKIAE 257


>gi|317133836|ref|YP_004089747.1| putative PAS/PAC sensor protein [Ruminococcus albus 7]
 gi|315450298|gb|ADU23861.1| putative PAS/PAC sensor protein [Ruminococcus albus 7]
          Length = 558

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          NC  C    C+  CPV       N   I   ECI CG C   CP DA  I  ++E
Sbjct: 11 NCKNC--YKCIRHCPVKSIRFSGNQAHIIEQECILCGQCVVVCPQDAKQIVDESE 63


>gi|303241136|ref|ZP_07327645.1| methyl-accepting chemotaxis sensory transducer [Acetivibrio
          cellulolyticus CD2]
 gi|302591396|gb|EFL61135.1| methyl-accepting chemotaxis sensory transducer [Acetivibrio
          cellulolyticus CD2]
          Length = 632

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 7  ENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C+ C    C+ VCPV+        +G+++  I   +CI CG C   C   A     + 
Sbjct: 11 EKCVGCN--KCIYVCPVEGANISYIKDGKSYTKIDESKCITCGSCINACDHQA--RSYQD 66

Query: 62 GLELWL 67
           LE +L
Sbjct: 67 DLESFL 72


>gi|301061446|ref|ZP_07202216.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300444485|gb|EFK08480.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 912

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 25/82 (30%)

Query: 3  YVVTENCILCKHTDCVEVCP---VDCFYEG---------------ENFLAIHPDECID-- 42
          YV  + CI C    C E CP    + +  G                   AI P+ CI   
Sbjct: 9  YVDMDKCIACG--ACAEKCPKKVDNAYDAGLGKRKAIYVKYAQAVPLKYAIDPEYCIKLT 66

Query: 43 ---CGVCEPECPVDAIKPDTEP 61
             CG CE  CP DAI  + + 
Sbjct: 67 KGKCGNCEKICPADAINYEDKE 88



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V    C  C  T CV +CP       E      I    C  CG+C   C   A+ 
Sbjct: 844 VNPNKCSSC--TVCVSICPYSAPRMNEKTGKAEIESTLCKGCGLCVASCRSGALH 896


>gi|292492246|ref|YP_003527685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nitrosococcus halophilus Nc4]
 gi|291580841|gb|ADE15298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nitrosococcus halophilus Nc4]
          Length = 84

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I P  C +C        C   CPV+ 
Sbjct: 1  MALLITDECINCDV--CEPECPNGAISQGEEIYVIEPKLCTECVGHFETPQCVEVCPVEC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IIPD 62



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNGAISQGEE 29


>gi|190575367|ref|YP_001973212.1| ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|190013289|emb|CAQ46923.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
          Length = 137

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
             +V  +CI C  T C++ CPVD    G  ++  +  D C  C +C P CPVD I+
Sbjct: 80  ALIVEADCIGC--TKCIQACPVDAIVGGAKYMHTVIADLCTGCELCIPPCPVDCIE 133


>gi|153814772|ref|ZP_01967440.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756]
 gi|317501321|ref|ZP_07959524.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088354|ref|ZP_08337273.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847803|gb|EDK24721.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756]
 gi|316897285|gb|EFV19353.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408598|gb|EGG88064.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 204

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y + + CI CK   C  VCP  C       + I+ + C+ CG C   CP   I+
Sbjct: 148 YFIGKECIGCKL--CYSVCPQKCIDISSVPVTINQNHCLHCGRCAEICPKQCIE 199


>gi|118602283|ref|YP_903498.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|156633539|sp|A1AVS0|NUOI_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118567222|gb|ABL02027.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 163

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPD--ECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP +                +    D  +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPANAITIESEMRDDGTRRTIVYDIDLFKCIFCGFCEEACPVDAI 118



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP +AI  ++E
Sbjct: 62 ERCIACKLCEAVCPANAITIESE 84


>gi|191170336|ref|ZP_03031889.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|300976975|ref|ZP_07173710.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|190909144|gb|EDV68730.1| 4Fe-4S binding domain protein [Escherichia coli F11]
 gi|300308445|gb|EFJ62965.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|324014246|gb|EGB83465.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
          Length = 157

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TYTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSCCIGCKSCMLACPFGAME 105


>gi|307354476|ref|YP_003895527.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
 gi|307157709|gb|ADN37089.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
          Length = 289

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           TE C+ C    C+E C        E+  ++ P  C  CGVC+  CP  AI        E+
Sbjct: 66  TEKCVQCG--ACLENCRFGAVEIKEDQYSVRPLLCEGCGVCDYVCPSGAISMKKRLSGEI 123

Query: 66  W 66
           +
Sbjct: 124 F 124



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G +   I  ++C+ CG C   C   A++
Sbjct: 58 GLDISVIDTEKCVQCGACLENCRFGAVE 85


>gi|257792756|ref|YP_003183362.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476653|gb|ACV56973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 219

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +   C  C++ +CV+VCP +  +  ++    I   +CI C  C   CP  
Sbjct: 59  YFLPVQCQHCENPECVKVCPTEASHIRDDGTVQIDKSKCIGCQFCAMACPYG 110


>gi|157737741|ref|YP_001490425.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018]
 gi|157699595|gb|ABV67755.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018]
          Length = 557

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA----IKP 57
           V   NC LC    CV  C VD  +  E +  L I+P  C  CG CE  CP +A    I  
Sbjct: 424 VNEANCTLCL--SCVGACNVDALFANEADFTLRINPSLCTACGYCEVSCP-EADCLTITK 480

Query: 58  DTEPGLELWLKIN 70
           D       W K N
Sbjct: 481 DEIELQPSWFKEN 493



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 16  DCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
            CVEVCP       E    L     +C  CG C   CP  ++         L+ +++  Y
Sbjct: 218 SCVEVCPTMAITKDETTKSLVFSNVDCNSCGECVSICPSGSLDSAATSRDSLF-ELSQFY 276

Query: 74  ATQWP 78
            T+ P
Sbjct: 277 KTRHP 281


>gi|149196293|ref|ZP_01873348.1| molybdopterin oxidoreductase, iron sulfur subunit [Lentisphaera
           araneosa HTCC2155]
 gi|149140554|gb|EDM28952.1| molybdopterin oxidoreductase, iron sulfur subunit [Lentisphaera
           araneosa HTCC2155]
          Length = 459

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKP 57
           VT  C  C    C E CPV+ + + E   +  H  D+CI C  C  +CP +  + 
Sbjct: 112 VTSACHHCLEPACSEGCPVNAYDKDEVTGIVKHLDDQCIGCQYCILKCPYEVPQF 166


>gi|134094045|ref|YP_001099120.1| putative electron transport complex protein: ferredoxin subunit
           (RfnB) [Herminiimonas arsenicoxydans]
 gi|133737948|emb|CAL60993.1| Putative electron transport complex, ferredoxin subunit
           [Herminiimonas arsenicoxydans]
          Length = 239

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI----KP 57
           V+ E+ CI C  T C++ CPVD        +  I  D C  C +C   CPVD I      
Sbjct: 92  VIDESLCIGC--TLCIQACPVDAIVGAAKQMHTIVTDLCTGCDLCVAPCPVDCIAMVEYT 149

Query: 58  DTEPGLELWLKINSEYAT 75
             + G + W +  ++ A 
Sbjct: 150 PGKTGWDAWSQAEADAAR 167



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PV+          I    CI C +C   CPVDAI
Sbjct: 80  PVNGVERPRPVAVIDESLCIGCTLCIQACPVDAI 113


>gi|187922588|ref|YP_001894230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phytofirmans PsJN]
 gi|187713782|gb|ACD15006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia phytofirmans PsJN]
          Length = 85

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEP 61
          I  D + 
Sbjct: 59 IPRDPDH 65


>gi|92115240|ref|YP_575168.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043]
 gi|110287760|sp|Q1QST9|NUOI_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91798330|gb|ABE60469.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043]
          Length = 179

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 57  ERCVACNL--CAVACPVACISLQKGERDDGRWYPEFFRINFSRCIFCGLCEEACPTSAIQ 114

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 115 LTPDFEMSEY 124


>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
 gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
          Length = 626

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C  + C + CPV+    E +    I   +CI CG C   C   AI+
Sbjct: 576 EKCRGC--SKCAKGCPVEAITGEIKKPYVIDKSKCIKCGNCIEGCVFKAIR 624



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             I  ++C  C  C   CPV+AI  + +  
Sbjct: 571 YEIDKEKCRGCSKCAKGCPVEAITGEIKKP 600


>gi|325294269|ref|YP_004280783.1| NIL domain-containing protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064717|gb|ADY72724.1| NIL domain-containing protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 138

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP + FY  +    +    D+C+ CG C P CP+  I 
Sbjct: 85  EKCVHCG--ACIAPCPTNAFYLDQETFKVKFDKDKCVGCGHCIPACPLRIIY 134



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           ++C+ CG C   CP +A   D E
Sbjct: 85  EKCVHCGACIAPCPTNAFYLDQE 107


>gi|188584958|ref|YP_001916503.1| protein of unknown function DUF362 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349645|gb|ACB83915.1| protein of unknown function DUF362 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 398

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCF-----YEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + +C  C    C + CPVD         G+  L  I PD CI+C  C   CP  A+  +
Sbjct: 323 SNSCAHCG--ICQKSCPVDAIKTQRSTNGDKNLYTITPDNCIECYCCHELCPEKAVNIE 379



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I  + C  CG+C+  CPVDAIK
Sbjct: 321 IDSNSCAHCGICQKSCPVDAIK 342


>gi|204926687|ref|ZP_03217889.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323352|gb|EDZ08547.1| dimethylsulfoxide reductase, chain B [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 208

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY  +  C  C    CV  CP    ++ +    + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYFSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118

Query: 60  EPG 62
           +  
Sbjct: 119 QAN 121


>gi|152998654|ref|YP_001364335.1| formate dehydrogenase subunit beta [Shewanella baltica OS185]
 gi|217971318|ref|YP_002356069.1| formate dehydrogenase subunit beta [Shewanella baltica OS223]
 gi|151363272|gb|ABS06272.1| formate dehydrogenase, beta subunit [Shewanella baltica OS185]
 gi|217496453|gb|ACK44646.1| formate dehydrogenase, beta subunit [Shewanella baltica OS223]
          Length = 303

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C    C+  C       +  N +     D+CI CG C   CP D  K D +  
Sbjct: 97  ACMHCADPACLTACSTSGAIIQHANGVVDFDSDKCIGCGYCASACPFDVPKIDPKDN 153


>gi|219666619|ref|YP_002457054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536879|gb|ACL18618.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 185

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIK 56
           + ++  C  C + +C+ VCP   + +  + + +H PD+C  C  C   CP  A +
Sbjct: 55  FFLSTACNHCANPECLRVCPYGAYAKRRDGIVLHFPDKCGSCKSCVASCPFGAPQ 109


>gi|316973508|gb|EFV57088.1| NADH-quinone oxidoreductase subunit I [Trichinella spiralis]
          Length = 165

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAIK
Sbjct: 84  ERCIACKL--CEAICPAQAITIEAEERPDGSRRTTRYDIDMCKCIYCGLCQEACPVDAIK 141



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 84  ERCIACKLCEAICPAQAITIEAEE 107


>gi|317489038|ref|ZP_07947565.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831036|ref|ZP_08164360.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
 gi|316911905|gb|EFV33487.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486957|gb|EGC89403.1| putative thiosulfate reductase electron transport protein phsb
           [Eggerthella sp. HGA1]
          Length = 219

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +   C  C++ +CV+VCP +  +  ++    I   +CI C  C   CP  
Sbjct: 59  YFLPVQCQHCENPECVKVCPTEASHIRDDGTVQIDKSKCIGCQFCAMACPYG 110


>gi|313648951|gb|EFS13388.1| uncharacterized ferredoxin-like protein ydhX [Shigella flexneri 2a
           str. 2457T]
          Length = 222

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 136


>gi|313672137|ref|YP_004050248.1| glutamate synthase (nadph) gltb3 subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938893|gb|ADR18085.1| glutamate synthase (NADPH) GltB3 subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 776

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 6   TENCILCKHTD----CVEVCPVDCF----YEGENFLAI-HPDECIDCGVCEPECP 51
           T+ C+ C        C+  CP         +G  F  I +P++CI CG+C   CP
Sbjct: 706 TKRCLSCGFCRDCELCLNSCPEQAISRIQKDGGKFEYISNPNKCIGCGICAGICP 760


>gi|257062959|ref|YP_003142631.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790612|gb|ACV21282.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C++  C+  CP    + + E  + I  D+CI C +C   CP +A
Sbjct: 64  ACQHCENAACLRACPTGATYKDEEGRVEIDYDKCIGCRMCMAACPYNA 111


>gi|226288083|gb|EEH43596.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 229

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 185

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 186 ESP----------NAEYATETREELLYNKEKLLANGDKWE 215


>gi|197302545|ref|ZP_03167600.1| hypothetical protein RUMLAC_01273 [Ruminococcus lactaris ATCC
          29176]
 gi|197298443|gb|EDY32988.1| hypothetical protein RUMLAC_01273 [Ruminococcus lactaris ATCC
          29176]
          Length = 383

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 9  CILCKHTDCVEVCPVDCFY--EGENFLAI---HPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  C    C+ +CP       E E+   I    P++CI+C  C   CP + +K   EP  
Sbjct: 11 CTGCL--ACMNLCPCGAITCQEREDGNVIPQIDPEKCIECHRCVQGCPENHVKEKHEPRQ 68


>gi|153806624|ref|ZP_01959292.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185]
 gi|149131301|gb|EDM22507.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185]
          Length = 300

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I PD+C  C  C   CP + I
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPDKCKSCRKCVEVCPQNTI 265



 Score = 40.1 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|145299279|ref|YP_001142120.1| formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142852051|gb|ABO90372.1| formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 226

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP         +  + + PD C+ C  C   CP  
Sbjct: 96  SCQHCDNAPCVHVCPTGASHIRAEDGIVDVDPDLCVGCMYCLAACPYQ 143


>gi|160895522|ref|YP_001561104.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia
          acidovorans SPH-1]
 gi|160361106|gb|ABX32719.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia
          acidovorans SPH-1]
          Length = 439

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV      +    +  ++C  C  C   CP  AI
Sbjct: 19 EICIRCN--TCEATCPVGAITHDDRNYVVLAEQCNGCMDCVSPCPTGAI 65



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  D  
Sbjct: 16 IDPEICIRCNTCEATCPVGAITHDDR 41


>gi|90407574|ref|ZP_01215755.1| electron transport protein [Psychromonas sp. CNPT3]
 gi|90311277|gb|EAS39381.1| electron transport protein [Psychromonas sp. CNPT3]
          Length = 176

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C + CP +     +N + +  + CI C  C   CP  A
Sbjct: 57  CRQCDDAPCAKACPNNAIISEDNHIKVIQELCIGCKSCVVACPYGA 102


>gi|26250358|ref|NP_756398.1| putative pyruvate formate-lyase 3 activating enzyme [Escherichia
           coli CFT073]
 gi|26110788|gb|AAN82972.1|AE016769_87 Putative pyruvate formate-lyase 3 activating enzyme [Escherichia
           coli CFT073]
          Length = 305

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    C++ CP        N   I+ D CI CG C   CP  A++
Sbjct: 60  DCIRCG--KCIDACPQQALS-TTNAWFINRDRCIQCGKCTEICPTRALE 105


>gi|315637523|ref|ZP_07892731.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri
           JV22]
 gi|315478182|gb|EFU68907.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri
           JV22]
          Length = 557

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA----IKP 57
           V   NC LC    CV  C VD  +  E +  L I+P  C  CG CE  CP +A    I  
Sbjct: 424 VNEANCTLCL--SCVGACNVDALFANEADFTLRINPSLCTACGYCEVSCP-EADCLTITK 480

Query: 58  DTEPGLELWLKIN 70
           D       W K N
Sbjct: 481 DEIELQPSWFKEN 493



 Score = 40.9 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 16  DCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
            C EVCP       E    L     +C  CG C   CP  ++         L+ +++  Y
Sbjct: 218 ACAEVCPTMAITKDETTKSLVFSNVDCNSCGECVSICPSGSLDSAATSRDSLF-ELSQFY 276

Query: 74  ATQWP 78
             + P
Sbjct: 277 KNRHP 281


>gi|296161524|ref|ZP_06844329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. Ch1-1]
 gi|295888168|gb|EFG67981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Burkholderia sp. Ch1-1]
          Length = 85

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +    G     I P +C +C        C   CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNNAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVEC 58

Query: 55 IKPDTEP 61
          I  D E 
Sbjct: 59 IPRDPEH 65


>gi|317052646|ref|YP_004113762.1| hypothetical protein Selin_2493 [Desulfurispirillum indicum S5]
 gi|316947730|gb|ADU67206.1| hypothetical protein Selin_2493 [Desulfurispirillum indicum S5]
          Length = 263

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVD 53
           + C  C    CV VCP    +  E+ + +  D+ C  CG C   CP D
Sbjct: 105 QLCNHCAEPSCVRVCPTGATFSREDGVVMVDDKVCWGCGYCINACPYD 152


>gi|194437731|ref|ZP_03069826.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
 gi|194423227|gb|EDX39219.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
          Length = 305

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    C++ CP        N   I+ D CI CG C   CP  A++
Sbjct: 60  DCIRCG--KCIDACPQQALS-TTNAWFINRDRCIQCGKCTEICPTRALE 105


>gi|209542887|ref|YP_002275116.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530564|gb|ACI50501.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 170

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EG---ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C   CPVDC        +G    ++  I+   CI CG CE  CP  AI+ 
Sbjct: 49  ERCVACGL--CAVACPVDCISLQKTEQDGRWYPDYFRINFSRCIFCGFCEEACPTYAIQL 106

Query: 58  DTEPGLELWL 67
             +  +  ++
Sbjct: 107 TPDFEMSEYV 116


>gi|189485599|ref|YP_001956540.1| electron transfer flavoprotein alpha subunit [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
 gi|170287558|dbj|BAG14079.1| electron transfer flavoprotein alpha subunit [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
          Length = 409

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA--------IHPDECIDCGVCEPECPVDAI 55
          V T+ C+ CK   C  VCP +     E            I  ++C  CG C   C  +AI
Sbjct: 7  VFTDKCVGCK--MCENVCPFNAISIVERLEYPKKFKLAVIDLNKCTYCGSCVQTCKFNAI 64

Query: 56 K 56
          +
Sbjct: 65 E 65


>gi|293609588|ref|ZP_06691890.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828040|gb|EFF86403.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 87

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 14/82 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCD--MCLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD------TEPGLELWLKIN 70
          IKPD       E  LE +  +N
Sbjct: 59 IKPDPAHIENKEQLLEKFKDLN 80


>gi|168008160|ref|XP_001756775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692013|gb|EDQ78372.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 161

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 116



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 60 ERCIACKLCEAVCPAQAITIEAEERED 86



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 101 CIYCGF--CQEACPVDAIVEGPNF 122


>gi|146342337|ref|YP_001207385.1| putative 4Fe-4S ferredoxin, fixG-like protein [Bradyrhizobium sp.
           ORS278]
 gi|146195143|emb|CAL79168.1| Putative 4Fe-4S ferredoxin, fixG-like protein [Bradyrhizobium sp.
           ORS278]
          Length = 497

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C    CV VCP+     +G NF       CI+CG+C   C     K D   GL  +
Sbjct: 292 DCVDCG--ACVAVCPIGIDIRQGPNF------ACINCGLCVDACDGVMAKLDRPRGLIDY 343

Query: 67  LKINSEYATQWPNITTKKESLP 88
                     W NI   +   P
Sbjct: 344 --------ESWTNIERGRAGQP 357


>gi|160873232|ref|YP_001552548.1| formate dehydrogenase subunit beta [Shewanella baltica OS195]
 gi|160858754|gb|ABX47288.1| formate dehydrogenase, beta subunit [Shewanella baltica OS195]
 gi|315265457|gb|ADT92310.1| formate dehydrogenase, beta subunit [Shewanella baltica OS678]
          Length = 303

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C+ C    C+  C       +  N +     D+CI CG C   CP D  K D +  
Sbjct: 97  ACMHCADPACLTACSTSGAIIQHANGVVDFDSDKCIGCGYCASACPFDVPKIDPKDN 153


>gi|83590549|ref|YP_430558.1| sigma-54 dependent trancsriptional regulator [Moorella
          thermoacetica ATCC 39073]
 gi|83573463|gb|ABC20015.1| sigma54 specific transcriptional regulator, Fis family [Moorella
          thermoacetica ATCC 39073]
          Length = 748

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE-PG 62
           +T  C +C    C+  CPV      +    + P+ CI CG C   C   A   + E   
Sbjct: 7  TITGKCRMC--YACIRNCPVKAIKVVDGQARVVPELCIACGHCVQVCAQGAKLVEREIDK 64

Query: 63 LELWLKIN-----------SEYATQWP 78
          +E +L              +E+   WP
Sbjct: 65 VEEFLAAGRVIACLAPSFVAEFHPAWP 91


>gi|262203451|ref|YP_003274659.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262086798|gb|ACY22766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 333

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + I  D C  CG C   CP   ++
Sbjct: 132 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVIQDDVCNGCGTCVAGCPFGVVE 183


>gi|237808741|ref|YP_002893181.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tolumonas auensis
           DSM 9187]
 gi|237501002|gb|ACQ93595.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tolumonas auensis
           DSM 9187]
          Length = 1196

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 38/109 (34%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------------------EG-ENFLA---IHPDE 39
           + CI C   +C  VCP                             G  + L    ++P++
Sbjct: 699 DLCIQCG--NCSFVCPHAAIRAKFYHKDLAENAPAGAKWAPISARGFPDTLYTLQVYPED 756

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLP 88
           C  CG+C   CPV A              IN   A + P +  +K +L 
Sbjct: 757 CTGCGLCVEACPVRA-------DDAQHRAIN--MADKLPILAREKRALG 796


>gi|222823215|ref|YP_002574788.1| ferredoxin [Campylobacter lari RM2100]
 gi|222538436|gb|ACM63537.1| ferredoxin [Campylobacter lari RM2100]
          Length = 81

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T  CI C    C E CP +  Y+ +    I PD C +C        C   CPVD 
Sbjct: 1  MSLLITRECISCD--ACREECPDEAIYDNDPIYVIDPDLCTECVNEFSEPACIVACPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|326519500|dbj|BAK00123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 223

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 37.1 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEERED 148



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNF 184


>gi|167856055|ref|ZP_02478798.1| electron transport complex protein RnfB [Haemophilus parasuis
           29755]
 gi|167852804|gb|EDS24075.1| electron transport complex protein RnfB [Haemophilus parasuis
           29755]
          Length = 199

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+  E CI C  T C+  CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 AYIHEELCIGC--TKCIAACPVDAIVGTNKAMHTVIADFCTGCELCVAPCPTDCIE 161


>gi|126133937|ref|XP_001383493.1| mitochondrial complex I NUIM TYKY subunit (proton translocation)
           [Scheffersomyces stipitis CBS 6054]
 gi|126095642|gb|ABN65464.1| mitochondrial complex I NUIM TYKY subunit (proton translocation)
           [Scheffersomyces stipitis CBS 6054]
          Length = 226

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 125 ERCIACKL--CEAICPAQAITIEAEERIDGSRRTYKYDIDMTKCIYCGYCQESCPVDAI 181



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E 
Sbjct: 106 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEE 148



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   E  N   
Sbjct: 166 CIYCGY--CQESCPVDAIVESPNVEY 189


>gi|119870982|ref|YP_940934.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. KMS]
 gi|161407219|ref|YP_642026.2| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. MCS]
 gi|119697071|gb|ABL94144.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
          Length = 559

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C    C   CP D      EG +      D C  CG C  +CPV AI+   E
Sbjct: 504 NCFECDG--CYGACPEDAIIKVAEGHHGYEFVYDRCTGCGACFEQCPVHAIEMLPE 557


>gi|73670980|ref|YP_306995.1| hypothetical protein Mbar_A3546 [Methanosarcina barkeri str.
           Fusaro]
 gi|72398142|gb|AAZ72415.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 438

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C+ CK    +E CP+      EN    +P+ C +CG+C   C  +A
Sbjct: 331 EKCLNCKDCLVIEACPMGAVSRRENGAVHNPEFCFNCGLCISRCRGEA 378


>gi|74149244|dbj|BAE22408.1| unnamed protein product [Mus musculus]
          Length = 212

 Score = 52.1 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAICPAQAITIEAEPRAD 137



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|327398596|ref|YP_004339465.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Hippea maritima DSM 10411]
 gi|327181225|gb|AEA33406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Hippea maritima DSM 10411]
          Length = 202

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C++  C  VCP    Y  ++ +  I  D C+ CG C   CP DA     +  LE 
Sbjct: 64  CMHCENPPCHSVCPTGATYINKDGIVLIDYDLCLGCGYCIEACPYDARYEYEKEDLEK 121


>gi|326519326|dbj|BAJ96662.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 223

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEERED 148



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNF 184


>gi|312622731|ref|YP_004024344.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203198|gb|ADQ46525.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 598

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           + + +NC+ CK    V  CP     E EN  + I    C  CG+C+  CP  AI+
Sbjct: 540 FKINQNCLKCKVCLNVTGCP--AIDEDENGNIFIDSVLCKGCGLCKNFCPYYAIE 592


>gi|312880734|ref|ZP_07740534.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784025|gb|EFQ24423.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 271

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ CP D  +   N   I PD+C  C +C  +CP  AI
Sbjct: 218 CIGCGL--CVKACPNDAVHVENNLARIDPDKCTQCCLCVDKCPTKAI 262



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CV VCP D  +   +   +   +C+ CG C   CP   I+
Sbjct: 150 CVAVCPFDAIHIENSVARVDEAKCVGCGACVTLCPKGLIE 189



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 18/66 (27%)

Query: 9   CILCKHTDCVEVCPVDCF----------------YEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    CV +CP                    + G +        CI CG+C   CP 
Sbjct: 173 CVGCG--ACVTLCPKGLIELVPLDQRVRVACHSTHRGPDVKKACQVGCIGCGLCVKACPN 230

Query: 53  DAIKPD 58
           DA+  +
Sbjct: 231 DAVHVE 236


>gi|303257784|ref|ZP_07343794.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Burkholderiales bacterium 1_1_47]
 gi|302859387|gb|EFL82468.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Burkholderiales bacterium 1_1_47]
          Length = 542

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFL-AI-HPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C   +C  VCP +     G++ +  I + D C  CGVC  ECP  AIK + E
Sbjct: 487 NCLQCD--NCYGVCPDNAVIKTGDDNVPYIFNYDYCKGCGVCASECPCGAIKMEPE 540


>gi|300114447|ref|YP_003761022.1| electron transport complex RnfABCDGE type subunit B [Nitrosococcus
           watsonii C-113]
 gi|299540384|gb|ADJ28701.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus watsonii C-113]
          Length = 209

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DTE 60
           V+ EN CI C  T C++ CPVD        L  +   EC  C +C   CPVD I+     
Sbjct: 106 VIDENRCIGC--TLCIQACPVDAILGAPKQLHTVITAECTGCELCVAPCPVDCIEMVPVA 163

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           P    W         +WP   T    LP AA+
Sbjct: 164 PEPGTW---------KWPFPETTHPPLPIAAQ 186


>gi|298375410|ref|ZP_06985367.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267910|gb|EFI09566.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 301

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV+VCP       E  +  +   C  CG C   CP  A++
Sbjct: 52 CIGCG--ACVDVCPTGALTLTEAGIVTNRSLCRTCGRCAEVCPTLAME 97



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 39 ECIDCGVCEPECPVDA 54
          +CI CG C   CP  A
Sbjct: 51 KCIGCGACVDVCPTGA 66


>gi|295107545|emb|CBL05088.1| 4Fe-4S binding domain. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 115

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
          V + C  C++  CV+VCP    Y  ++    I  ++CI C  C   CP  A
Sbjct: 49 VPKQCNHCENPQCVKVCPTGASYVADDGTVQIDAEKCIGCKYCLAACPYQA 99


>gi|240102484|ref|YP_002958793.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910038|gb|ACS32929.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 647

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V+ E C  CK   C+    CP   +   +    I P  C  CG C   CP DA +P  E
Sbjct: 588 HVIEEKCTGCK--ICINAYGCPAIYWDAEKKKARIDPTICWGCGGCAQVCPFDAFEPMKE 645

Query: 61  PG 62
             
Sbjct: 646 GE 647


>gi|239906941|ref|YP_002953682.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
 gi|239796807|dbj|BAH75796.1| nitroreductase family protein [Desulfovibrio magneticus RS-1]
          Length = 304

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPGLELW 66
           C+ C   +CV VCP      G+  + +    CI CG C   CP  A+  P  +P  + +
Sbjct: 15 ACVGCG--ECVTVCPSGVLSLGDGLVVVAGAGCIGCGQCRAVCPQCALTIPGDDPWAQAY 72


>gi|303289747|ref|XP_003064161.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454477|gb|EEH51783.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 231

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 130 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 186



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 171 CIYCGF--CQEACPVDAIVEGPNFEY 194



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 130 ERCIACKLCEAICPAQAITIEAEERED 156


>gi|289207279|ref|YP_003459345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. K90mix]
 gi|288942910|gb|ADC70609.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. K90mix]
          Length = 82

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +  Y G+    I P+ C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNEAIYPGDEIYEIDPERCTECVGHYDEPQCQDVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P      E   ++ ++Y
Sbjct: 59 I-PLDPDRKETREQLQAKY 76


>gi|254509840|ref|ZP_05121907.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533551|gb|EEE36539.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    +   E+ +  ++  +CI CG+C   CP  A + D   G
Sbjct: 70  SCLHCEDAPCVTVCPTGASYKRVEDGIVLVNESDCIGCGLCAWSCPYGARELDQAEG 126


>gi|144897604|emb|CAM74468.1| anaerobic dimethyl sulfoxide reductase chain B [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 244

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y  E +  + +  D+CI C  C   CP  A + D 
Sbjct: 75  SCLHCEDPPCVPVCPTGASYKRESDGIVLVDYDKCIGCKYCSWNCPYGAREFDE 128


>gi|124027372|ref|YP_001012692.1| putative ATPase RIL [Hyperthermus butylicus DSM 5456]
 gi|123978066|gb|ABM80347.1| RNase L inhibitor, ATPase [Hyperthermus butylicus DSM 5456]
          Length = 613

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 7  ENCILCK-HTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          E C   K H +C+  CPV+        F E      I+ + C+ CG+C  +CP  AI   
Sbjct: 10 ELCKPSKCHRECIAFCPVNLTGGKAIEFDEARRKPVIYEETCVGCGICVKKCPFKAISIV 69

Query: 59 TEPGL 63
            P  
Sbjct: 70 NLPDE 74


>gi|26991800|ref|NP_747225.1| ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148550200|ref|YP_001270302.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida F1]
 gi|24986912|gb|AAN70689.1|AE016712_7 ferredoxin, 4Fe-4S [Pseudomonas putida KT2440]
 gi|148514258|gb|ABQ81118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pseudomonas putida F1]
 gi|313501100|gb|ADR62466.1| Ferredoxin, 4Fe-4S [Pseudomonas putida BIRD-1]
          Length = 83

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D     
Sbjct: 59 IPLDEAHPE 67


>gi|330503264|ref|YP_004380133.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01]
 gi|328917550|gb|AEB58381.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01]
          Length = 182

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E ++      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMGEF 127


>gi|299068050|emb|CBJ39264.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum CMR15]
          Length = 82

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPHD 62


>gi|325679212|ref|ZP_08158803.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109141|gb|EGC03366.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 558

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          NC  C    C+  CPV       N   I   ECI CG C   CP DA  I  ++E
Sbjct: 11 NCKNC--YKCIRYCPVKSIRFSGNQAHIIEQECILCGQCVVVCPQDAKQIVDESE 63


>gi|291280069|ref|YP_003496904.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
 gi|290754771|dbj|BAI81148.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin [Deferribacter
           desulfuricans SSM1]
          Length = 184

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++T C  VCP    Y+ E  +  +  D+CI C  C   CP DA
Sbjct: 63  CQHCENTPCASVCPTHATYKTEEGVVLVDYDKCILCKACMTACPYDA 109


>gi|139437985|ref|ZP_01771538.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC
          25986]
 gi|133776182|gb|EBA40002.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC
          25986]
          Length = 401

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 6  TENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +E CI C    CV  C  D      E  N  A   D CI CG C   CPV+AI  + +  
Sbjct: 8  SEACIGCG--RCVRACASDGIVVKGERPNRCARVTDGCILCGGCVDACPVNAISIERDEA 65

Query: 63 L 63
           
Sbjct: 66 A 66



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           L I  + CI CG C   C  D I
Sbjct: 3  GLIIDSEACIGCGRCVRACASDGI 26



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCF 26
          VT+ CILC    CV+ CPV+  
Sbjct: 39 VTDGCILCGG--CVDACPVNAI 58


>gi|114320816|ref|YP_742499.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227210|gb|ABI57009.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 261

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C H  CV+VCP     +  + +  +    CI C  C   CP  A     EP
Sbjct: 124 CQHCAHPPCVQVCPTGASMQRADGIVQVDKHLCIGCRYCMMACPYKARSFVHEP 177


>gi|95930133|ref|ZP_01312872.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas
          acetoxidans DSM 684]
 gi|95133827|gb|EAT15487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas
          acetoxidans DSM 684]
          Length = 60

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y +  E+C  C   +C  VCPVDC    +N    I+ +ECIDCG C   CPVD I  
Sbjct: 1  MSYRILEEDCTACG--ECEPVCPVDCISAKDNGKRLINEEECIDCGACADACPVDCIYQ 57


>gi|292492181|ref|YP_003527620.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
 gi|291580776|gb|ADE15233.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
          Length = 180

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCIALQKAEDEQGRWYPEFFRINFSRCIFCGLCEEACPTYAIQ 115

Query: 57  PDTEPGLELWLKIN 70
              +  +  + + N
Sbjct: 116 LTPDFEMGEYERQN 129


>gi|283787055|ref|YP_003366920.1| cytochrome c-type biogenesis protein [Citrobacter rodentium ICC168]
 gi|282950509|emb|CBG90174.1| cytochrome c-type biogenesis protein [Citrobacter rodentium ICC168]
          Length = 223

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    + +  N +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDRAPCVDVCPTGASYRDAANGIVDVNPDLCVGCQYCIAACPY 137


>gi|269468926|gb|EEZ80510.1| electron transport complex protein RnfB [uncultured SUP05 cluster
           bacterium]
          Length = 147

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK-PDTE 60
           +V  + CI C  T C++ CPVD F         +  DEC  C +C P CPVD I   + +
Sbjct: 74  FVDEQICIGC--TLCIQACPVDAFVGASKVMTTVIADECTGCDLCIPVCPVDCIHVLEVQ 131

Query: 61  PGLELWL 67
           P L  ++
Sbjct: 132 PTLNTYV 138



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY 27
           MT V+ + C  C    C+ VCPVDC +
Sbjct: 102 MTTVIADECTGCDL--CIPVCPVDCIH 126


>gi|257063524|ref|YP_003143196.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256791177|gb|ACV21847.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 447

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C+++CP    +    +GE      P  C++CGVC   CP +AIK   +  ++
Sbjct: 318 CRACGV--CMQMCPTGSIHHTLGDGEFVYEFSPGTCVNCGVCVASCPKEAIKHRAQALMQ 375

Query: 65  LWL 67
            + 
Sbjct: 376 PFY 378



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 16 DCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           C++ CP    ++ +      I P  C++CG C   C +DA
Sbjct: 31 SCIDTCPTGAIHKSDKRGMPEIDPTICVNCGQCLSACHLDA 71


>gi|218561250|ref|YP_002394163.1| pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88]
 gi|218691120|ref|YP_002399332.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli ED1a]
 gi|237703757|ref|ZP_04534238.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|218368019|emb|CAR05821.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli S88]
 gi|218428684|emb|CAR09615.2| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli ED1a]
 gi|226901669|gb|EEH87928.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|323950274|gb|EGB46155.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H252]
 gi|323955614|gb|EGB51374.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H263]
          Length = 305

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    C++ CP        N   I+ D CI CG C   CP  A++
Sbjct: 60  DCIRCG--KCIDACPQQALS-TTNAWFINRDRCIQCGKCTEICPTRALE 105


>gi|213416711|ref|ZP_03349855.1| hypothetical protein Salmonentericaenterica_01517 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 119

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAACPF 108


>gi|241662549|ref|YP_002980909.1| ferredoxin [Ralstonia pickettii 12D]
 gi|240864576|gb|ACS62237.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12D]
          Length = 276

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E CI C  T C++ CPVD        +  +  D C  C +C P CPVD I          
Sbjct: 92  ERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDMIPVTGERT 149

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 150 GWDAWSQQRADVAR 163



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           P +   +      I P+ CI C +C   CPVDAI
Sbjct: 76  PSNGIEQPRAIAVIDPERCIGCTLCIQACPVDAI 109


>gi|153005267|ref|YP_001379592.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028840|gb|ABS26608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 307

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV+ CP    + E +  + I  D CI C  C   CP  A
Sbjct: 162 CQQCRNPPCVKACPTQATWKEPDGIVVIDYDWCIGCRCCMSACPYGA 208


>gi|254975433|ref|ZP_05271905.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-66c26]
 gi|255092820|ref|ZP_05322298.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile CIP 107932]
 gi|255517237|ref|ZP_05384913.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-97b34]
 gi|255650343|ref|ZP_05397245.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-37x79]
 gi|260683456|ref|YP_003214741.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile CD196]
 gi|260687052|ref|YP_003218185.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile R20291]
 gi|306520306|ref|ZP_07406653.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-32g58]
 gi|260209619|emb|CBA63285.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile CD196]
 gi|260213068|emb|CBE04440.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile R20291]
          Length = 315

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C+ CK    VEVCPV      +   L I  + C +CG C   C  D+I+ + E G +
Sbjct: 169 SELCVGCKKCAVVEVCPVKAAKLTDKGKLEIDSNLCNNCGKCIESCNFDSIE-EKESGYK 227

Query: 65  LWL 67
           +++
Sbjct: 228 VYI 230



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 18  VEVCPVDCFYEGENFLAI--------HPDECIDCGVC--EPECPVDAIKPDTEPGLE 64
           V  CP +C     N L I          + C+ C  C     CPV A K   +  LE
Sbjct: 142 VGGCPNNCIKPDLNDLGIVGQRVPDYDSELCVGCKKCAVVEVCPVKAAKLTDKGKLE 198


>gi|159488755|ref|XP_001702368.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
 gi|34328786|gb|AAQ63697.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
 gi|158271162|gb|EDO96988.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
          Length = 231

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 130 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 186



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 130 ERCIACKLCEAICPAQAITIEAEERED 156



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 171 CIYCGF--CQEACPVDAIVEGPNF 192


>gi|327399174|ref|YP_004340043.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Hippea
           maritima DSM 10411]
 gi|327181803|gb|AEA33984.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Hippea
           maritima DSM 10411]
          Length = 590

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AI 55
           VV + CI CK   C+   CP       +N   I    C  C VC+  CPV+ AI
Sbjct: 535 VVADKCIGCK--RCLRIACP--AIDFKDNKAVIDEVLCTGCEVCKNVCPVEGAI 584


>gi|255013975|ref|ZP_05286101.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
          Length = 301

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV+VCP       E  +      C  CG C   CP  A++
Sbjct: 52 CIGCG--ACVDVCPTGALTLTEAGIVTDRSLCRTCGRCAEVCPTLAME 97



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C               L     +CI CG C   CP  A
Sbjct: 26 CPLACVWCHNPEGISPRAEKLYTRK-KCIGCGACVDVCPTGA 66


>gi|291287559|ref|YP_003504375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884719|gb|ADD68419.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 187

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T +C  C+   CV  CP     + E+ +  ++   CI CG C   CP      D + G 
Sbjct: 62  TLSCNHCEKPMCVASCPTKAMQKREDGIVFVNYSACIGCGTCSEVCPYSVPVMDEDLGQ 120


>gi|108803761|ref|YP_643698.1| 2-oxoacid:acceptor oxidoreductase subunit delta,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
 gi|108765004|gb|ABG03886.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
          Length = 403

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + CI C    C   CP +CF   E  L  I+ + C  CG+C   CPV+
Sbjct: 291 DTCIKC--RQCWIDCPDECFEVTEEGLHPINYEYCTGCGICSQVCPVE 336


>gi|46202049|ref|ZP_00053861.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
          [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 8  NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C++  C EVCP    F + + F+ +  ++CI C  C   CP  
Sbjct: 52 PCMHCENPSCREVCPTGATFKDKDGFVLVDWEKCIGCKYCMVACPYG 98


>gi|330997523|ref|ZP_08321371.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
          11841]
 gi|329570468|gb|EGG52195.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
          11841]
          Length = 387

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPVDAIKPDT 59
          +T+    C    CV++CP  C     +   FL      + CI CG+CE  CP+   K   
Sbjct: 4  ITDKAKCCGCNACVQICPQKCIEMNPDSEGFLYPKTSKENCIQCGLCERVCPLGEPKSKR 63

Query: 60 EPGL 63
          EP  
Sbjct: 64 EPKE 67


>gi|262276174|ref|ZP_06053983.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
 gi|262219982|gb|EEY71298.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
          Length = 570

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 6   TENCIL-----CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--D 58
           TE C          T C++ CP +        + I+P  C   G C   CP +AI     
Sbjct: 198 TERCAHASRGLEGCTRCIDACPAEALSTINQTITINPYLCQGIGSCATVCPTEAISYALP 257

Query: 59  TEPGLELWL 67
                + ++
Sbjct: 258 DPENTQHFV 266



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-GEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T +C LC    CV VCP       G    +     +C+ CG+CE  CP   I  +
Sbjct: 433 VKTHDCTLCMG--CVAVCPTGALSSIGSRPGITFREQDCVQCGLCESSCPESVITLE 487


>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 597

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E C  C    C+  CP      G+      I P  CI CG C   C  DA+  +  P 
Sbjct: 543 EACTGCG--MCMRACPAGAIS-GDRREPHVIDPHLCIACGSCREACHFDAVLTERRPA 597



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CP           AI P+ C  CG+C   CP  AI  D     
Sbjct: 525 KECPAG-VCAKLTQFAIEPEACTGCGMCMRACPAGAISGDRREPH 568


>gi|257064441|ref|YP_003144113.1| glycyl-radical enzyme activator family protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256792094|gb|ACV22764.1| glycyl-radical enzyme activator family protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 311

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           NCI C   +CV VCPV     + +  + I    C  C  C  +C   A++   +P
Sbjct: 58  NCIGCG--ECVNVCPVGAIRMDSDEGVVIDRASCTLCLACADQCYAKALRAVAKP 110



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E  L   P+ CI CG C   CPV AI+ D++ G
Sbjct: 49 EQQLIQSPNNCIGCGECVNVCPVGAIRMDSDEG 81


>gi|148285163|ref|YP_001249253.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Boryong]
 gi|189184497|ref|YP_001938282.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Ikeda]
 gi|156633535|sp|A5CFN6|NUOI_ORITB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737406|sp|B3CUK1|NUOI_ORITI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146740602|emb|CAM81256.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Boryong]
 gi|189181268|dbj|BAG41048.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Ikeda]
          Length = 161

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP         E  N         I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAKEQPNGSRRTTKYDIDMTKCIYCGLCQEACPVDAI 116



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + + 
Sbjct: 60 ERCIACKLCEAICPAQAITIEAKE 83



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN 31
           CI C    C E CPVD   EG N
Sbjct: 101 CIYCGL--CQEACPVDAIVEGPN 121


>gi|304391410|ref|ZP_07373352.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130]
 gi|303295639|gb|EFL89997.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130]
          Length = 163

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAVCPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 11/40 (27%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF---------LAIHPDE 39
           CI C    C E CPVD   EG NF         L    D+
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNFEFSTETREELYYDKDK 140


>gi|289620443|emb|CBI53016.1| unnamed protein product [Sordaria macrospora]
          Length = 221

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 22/80 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 120 ERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 177

Query: 57  PDTEPGLELWLKINSEYATQ 76
                        N+EYAT+
Sbjct: 178 ESP----------NAEYATE 187



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 101 PISPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERAD 146


>gi|284051681|ref|ZP_06381891.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Arthrospira
           platensis str. Paraca]
 gi|291570294|dbj|BAI92566.1| pyruvate flavodoxin oxidoreductase [Arthrospira platensis NIES-39]
          Length = 1193

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 37/113 (32%)

Query: 6   TENCILCKHTDCVEVCPVDCF--------------------------YEGENFLA-IHPD 38
            + C+ C    C+ VCP                              +EG+ F   + P+
Sbjct: 687 ADVCVQCG--KCIMVCPHAVIRGKAYDESALNGAPETFKTTAVRDKAFEGQKFTIQVSPE 744

Query: 39  ECIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWPNITTK 83
           +C  CG+C   CP          AI  + +P +    + N E+    PN   +
Sbjct: 745 DCTGCGICVDVCPAKNKSMPSKKAINMEYQPPIRATERDNWEFFLNLPNPDRR 797


>gi|315231247|ref|YP_004071683.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP]
 gi|315184275|gb|ADT84460.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP]
          Length = 190

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           ++ + C  C  T C   CP +        +  I P++C+ CG+C   C   AI+ 
Sbjct: 135 IIPDKCKGC--TLCARNCPQNAITGAPGKVHKIDPNKCVGCGICASVCRFGAIEE 187



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI CK   CV VCP            +      C+ C  C   CPV+A++   E
Sbjct: 44 DKCIGCKL--CVTVCPAGVIEFVPEIKKVTFWLGRCVFCAQCVDVCPVNALEMSKE 97



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKP 57
           L    D+CI C +C   CP   I+ 
Sbjct: 38 KLVYDVDKCIGCKLCVTVCPAGVIEF 63


>gi|170068344|ref|XP_001868829.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex
           quinquefasciatus]
 gi|167864397|gb|EDS27780.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex
           quinquefasciatus]
          Length = 213

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 112 ERCIACKL--CEAICPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 168



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 112 ERCIACKLCEAICPAQAITIEAEE 135



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 153 CIYCGF--CQEACPVDAIVEGPNF 174


>gi|167625926|ref|YP_001676220.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355948|gb|ABZ78561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 182

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           +C+ C +  C+ VCP   +   ++ L +   D+C  CG+C   CP DA+
Sbjct: 60  SCMHCGNPGCLMVCPSQAYSVRDDGLVVLDRDKCTGCGLCVNACPYDAV 108


>gi|121610913|ref|YP_998720.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121555553|gb|ABM59702.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 267

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C    CV VCP    Y+   +  + +  D+CI C  C   CP  A + D +
Sbjct: 107 SCLHCADPPCVPVCPTGASYKRQQDGIVLVDYDKCIGCKYCAWACPYGAREFDEQ 161


>gi|108772248|gb|ABG10970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
          Length = 545

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C    C   CP D      EG +      D C  CG C  +CPV AI+   E
Sbjct: 490 NCFECDG--CYGACPEDAIIKVAEGHHGYEFVYDRCTGCGACFEQCPVHAIEMLPE 543


>gi|332800160|ref|YP_004461659.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Tepidanaerobacter sp. Re1]
 gi|332697895|gb|AEE92352.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Tepidanaerobacter sp. Re1]
          Length = 593

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E C  C    C    CP   F        I   +CI C VC   CPV+AI  
Sbjct: 538 VDEEICNGC--RACTRTGCPAINFSMNNKKSYIDQAQCIGCSVCAQVCPVNAIHE 590


>gi|301064321|ref|ZP_07204755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
 gi|300441600|gb|EFK05931.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
          Length = 1395

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++V    CI C    C + CP           G     + P  C  CG C   CP  A  
Sbjct: 1320 SHVNEHYCIGCG--MCGDACPYGAIGLVDLETGGQVSRVQPALCKGCGACAVACPTGAAA 1377

Query: 57   PDTEPGLELWLKINSEY 73
                   E+   +++  
Sbjct: 1378 VFHYDDQEVLTMVDAAL 1394



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 10/19 (52%)

Query: 34 AIHPDECIDCGVCEPECPV 52
           I PD C  CG C   CPV
Sbjct: 18 FIDPDACTACGDCAEVCPV 36


>gi|295106684|emb|CBL04227.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 174

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
            V+ +C+ C    C +VCP       GE+ + +   ++CI C  C   CP    + 
Sbjct: 55  FVSMSCMHCGEPACAKVCPAGAITKRGEDGIVVVDKEKCIGCHYCFFACPFGVPQY 110


>gi|289670256|ref|ZP_06491331.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 139

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 134


>gi|256828656|ref|YP_003157384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577832|gb|ACU88968.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 660

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL------AIHPDECIDCGVCEPECPVDAIKP 57
           V    C+ C    C++ CP     E ++         I    C  CG+C   CP  AI+ 
Sbjct: 579 VNPARCVGCG--KCIQTCPFGAIKEVQDRFGNPKAEVID-TVCQGCGICTVTCPQGAIQL 635

Query: 58  DTEPGLELWLKINS 71
           +     ++  ++N+
Sbjct: 636 EHFTDNQILAEVNA 649



 Score = 40.5 bits (94), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 26/86 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECI- 41
           TYV  ++C  C    CVE CP     D F E                    AI+ + C+ 
Sbjct: 235 TYVNWKDCTGCGL--CVEKCPSRKFPDKFNENLCNAPSINIPFPQAIPKKAAINAESCLM 292

Query: 42  ----DCGVCEPECPVDAIKPDTEPGL 63
                CG+C   CPV  I  + +  L
Sbjct: 293 LTKGKCGLCAKVCPVKCIDFEQQDEL 318


>gi|198433064|ref|XP_002131912.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 23 kDa subunit) (Complex I-23kD)
           (CI-23kD) (TYKY subunit) [Ciona intestinalis]
          Length = 208

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 107 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 163



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 148 CIYCGF--CQEACPVDAIVEGPNFEY 171



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 107 ERCIACKLCEAICPAQAITIEAEERAD 133


>gi|195037807|ref|XP_001990352.1| GH18285 [Drosophila grimshawi]
 gi|193894548|gb|EDV93414.1| GH18285 [Drosophila grimshawi]
          Length = 217

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|163732050|ref|ZP_02139496.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
 gi|161394348|gb|EDQ18671.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
          Length = 164

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVDAI 
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIV 120

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   A
Sbjct: 121 EGPNFEFSTETREELYYDKDRLLA 144


>gi|146307442|ref|YP_001187907.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp]
 gi|145575643|gb|ABP85175.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp]
          Length = 182

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C      E ++      F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMGEY 127


>gi|71906801|ref|YP_284388.1| electron transport complex protein RnfB [Dechloromonas aromatica
           RCB]
 gi|71846422|gb|AAZ45918.1| Electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
          Length = 180

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           V+ EN CI C  T C++ CPVD        L I    +C  C +C P CPV+ I   T P
Sbjct: 104 VIDENTCIGC--TLCIQACPVDAIVGAAKQLHIIIAQQCTGCELCLPPCPVECIAMATIP 161

Query: 62  G 62
            
Sbjct: 162 E 162


>gi|310779014|ref|YP_003967347.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
 gi|309748337|gb|ADO82999.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTE 60
          NC  C    CV  C V       +   I  D+CI CG C   CP +A  I  D +
Sbjct: 10 NCKHC--YKCVRKCEVKAIKIENDQAHIMEDKCIACGQCFAICPQNARNIMSDLD 62


>gi|293401784|ref|ZP_06645925.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304736|gb|EFE45984.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 208

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +  NCI C    C+  CP  C  +G+    I    C+ CG+C   CPV AI+
Sbjct: 152 YQIQTNCIGCN--KCLSSCPQQCIKQGKP-YHIVQSHCLHCGLCYELCPVHAIR 202


>gi|291280064|ref|YP_003496899.1| iron-sulfur cluster-binding protein [Deferribacter desulfuricans
           SSM1]
 gi|290754766|dbj|BAI81143.1| iron-sulfur cluster-binding protein [Deferribacter desulfuricans
           SSM1]
          Length = 288

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C+ C    C EVC  D      +   I    C  CG C  EC  +AI    +   E +
Sbjct: 67  ERCVKCN--RCYEVCEFDAVNFDGDTYLIDKLSCEGCGFCSYECKAEAINSYEKLTGEKY 124

Query: 67  LKI 69
           + I
Sbjct: 125 ISI 127


>gi|255008332|ref|ZP_05280458.1| putative dehydrogenase [Bacteroides fragilis 3_1_12]
 gi|313146055|ref|ZP_07808248.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides fragilis 3_1_12]
 gi|313134822|gb|EFR52182.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides fragilis 3_1_12]
          Length = 607

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +T+    C    C +VC  +        EG  +  I  D+C DCG+CE  CP+  I+   
Sbjct: 4  ITDKSECCGCNACGDVCAHNAITFKTDIEGFWYPEIDKDKCTDCGLCEKVCPIVNIEELK 63

Query: 60 EPGLEL 65
          +   E 
Sbjct: 64 KNDFEK 69


>gi|256810322|ref|YP_003127691.1| NIL domain protein [Methanocaldococcus fervens AG86]
 gi|256793522|gb|ACV24191.1| NIL domain protein [Methanocaldococcus fervens AG86]
          Length = 131

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP+D  Y  E + +    DEC+ C  C   CP  AI+
Sbjct: 80  EKCVHCG--CCLTQCPIDAIYMDEEYNVVFKEDECVGCKNCMKACPFKAIE 128



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           ++C+ CG C  +CP+DAI  D E
Sbjct: 80  EKCVHCGCCLTQCPIDAIYMDEE 102


>gi|218678471|ref|ZP_03526368.1| NADH dehydrogenase subunit I [Rhizobium etli CIAT 894]
          Length = 160

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 115



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 39 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 81



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 100 CIYCGF--CQEACPVDAIVEGPNF 121


>gi|114771827|ref|ZP_01449220.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255]
 gi|114547643|gb|EAU50534.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255]
          Length = 163

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI 
Sbjct: 62  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 119

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   N   +
Sbjct: 120 EGPNFEFATETREELFYNKNKLLS 143


>gi|54611544|gb|AAH21616.2| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus]
          Length = 212

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAICPAQAITIEAEPRAD 137



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|70607938|ref|YP_256808.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568586|gb|AAY81515.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus
           acidocaldarius DSM 639]
          Length = 611

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 9   CILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           C  C  T C +   CP       +    I    CI CG C P CP  A  IK D   G +
Sbjct: 550 CTGC--TICYDYFTCPA-IIPRKDKKAEIDVYNCIGCGACVPVCPFKAISIKGDKPEGWD 606

Query: 65  L-WLK 68
             WL+
Sbjct: 607 KLWLE 611


>gi|325184975|emb|CCA19467.1| NADH dehydrogenase putative [Albugo laibachii Nc14]
          Length = 202

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 101 ERCIACKL--CEAICPAQAITIEAEARADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 157



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 101 ERCIACKLCEAICPAQAITIEAEARAD 127



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 142 CIYCGF--CQEACPVDAIVEGPNF 163


>gi|325261134|ref|ZP_08127872.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
 gi|324032588|gb|EGB93865.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
          Length = 860

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C     VE CP+      +  + I  D+C  CG C  +CP   I+
Sbjct: 715 EKCRGCGTCQVVEGCPIKIAELADGKILIDDDKCNHCGRCVGKCPFKVIE 764


>gi|311247106|ref|XP_003122482.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Sus scrofa]
 gi|311247126|ref|XP_003122488.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Sus scrofa]
          Length = 239

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 138 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 194



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 138 ERCIACKLCEAVCPAQAITIEAEPRAD 164



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 179 CIYCGF--CQEACPVDAIVEGPNF 200


>gi|312898042|ref|ZP_07757448.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera micronuciformis F0359]
 gi|310620867|gb|EFQ04421.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera micronuciformis F0359]
          Length = 645

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 1   MT-YVVTEN-CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           MT +VV ++ CI CK   C+   CP   F +      I  D C+ CGVC   CPV+AI
Sbjct: 585 MTPFVVDQDKCIGCK--KCLSTGCPALRFDDESRKSNISVD-CVGCGVCAQVCPVNAI 639


>gi|303249219|ref|ZP_07335456.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489394|gb|EFL49345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 652

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++V  + C+ C    C+  CP     E    G+    +    C  CG+C   CP  AI+ 
Sbjct: 577 SHVDIKRCVGCG--KCIMTCPFKAIKEVEFRGQKKAEVIETVCQGCGLCTSTCPQGAIQL 634

Query: 58  DTEPGLELWLKINS 71
                 E+  ++N+
Sbjct: 635 SHFTDNEILAEVNA 648



 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 27/85 (31%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV  E C  C    C E CP     D F E                     I P  C  
Sbjct: 235 TYVDWELCTGCG--ACTEKCPSKKNPDKFNENIGPTTSINIPFPQAIPKKAVIDPTTCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AIK D +  
Sbjct: 293 FVKGKCGVCAKVCPTGAIKYDMQDE 317


>gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 574

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C  T C   CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 524 DKCRGC--TLCARNCPAGAIVGSVKNPHVIDQNKCIKCGACMEKCKFGAIY 572



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D+C  C +C   CP  AI
Sbjct: 521 IDRDKCRGCTLCARNCPAGAI 541


>gi|126699405|ref|YP_001088302.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile 630]
 gi|255100934|ref|ZP_05329911.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-63q42]
 gi|255306823|ref|ZP_05350994.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile ATCC 43255]
 gi|115250842|emb|CAJ68666.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile]
          Length = 315

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C+ CK    VEVCPV      +   L I  + C +CG C   C  D+I+ + E G +
Sbjct: 169 SELCVGCKKCAVVEVCPVKAAKLTDKGKLEIDSNLCNNCGKCIESCNFDSIE-EKESGYK 227

Query: 65  LWL 67
           +++
Sbjct: 228 VYI 230



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 18  VEVCPVDCFYEGENFLAI--------HPDECIDCGVC--EPECPVDAIKPDTEPGLE 64
           V  CP +C     N L I          + C+ C  C     CPV A K   +  LE
Sbjct: 142 VGGCPNNCIKPDLNDLGIVGQRVPDYDSELCVGCKKCAVVEVCPVKAAKLTDKGKLE 198


>gi|121607275|ref|YP_995082.1| RnfABCDGE type electron transport complex subunit B
           [Verminephrobacter eiseniae EF01-2]
 gi|121551915|gb|ABM56064.1| electron transport complex, RnfABCDGE type, B subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 220

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            ++  + CI C  T C++VCP D        +  I    C  C +C P CPVD I  DT
Sbjct: 86  AFIDEDWCIGC--TLCLKVCPTDAIVGASKMMHTIIERYCTGCELCLPVCPVDCIALDT 142



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 28  EGENFL-AIHPDECIDCGVCEPECPVDAI 55
           EG   +  I  D CI C +C   CP DAI
Sbjct: 80  EGPRSVAFIDEDWCIGCTLCLKVCPTDAI 108


>gi|53712822|ref|YP_098814.1| putative dehydrogenase [Bacteroides fragilis YCH46]
 gi|52215687|dbj|BAD48280.1| putative dehydrogenase [Bacteroides fragilis YCH46]
          Length = 607

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +T+    C    C +VC  +        EG  +  I  D+C DCG+CE  CP+  I+   
Sbjct: 4  ITDKSECCGCNACGDVCAHNAITFKTDIEGFWYPEIDKDKCTDCGLCEKVCPIVNIEELK 63

Query: 60 EPGLEL 65
          +   E 
Sbjct: 64 KNDFEK 69


>gi|1171862|sp|P42028|NDUS8_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; AltName: Full=TYKY
           subunit; Flags: Precursor
 gi|163418|gb|AAA30664.1| NADH dehydrogenase (ubiquinone) [Bos taurus]
 gi|296471574|gb|DAA13689.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Bos taurus]
          Length = 212

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAVCPAQAITIEAEPRAD 137



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|310658139|ref|YP_003935860.1| formate dehydrogenase-h, [4fe-4S] ferredoxin subunit [Clostridium
           sticklandii DSM 519]
 gi|308824917|emb|CBH20955.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Clostridium
           sticklandii]
          Length = 179

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +VT    C  C+   C  VCPV      ++ + I  ++CI C  C   CP+ A
Sbjct: 52  IVTTPIQCRQCEDAPCANVCPVSGIIHQDDKIIIKTEQCIGCKTCILACPIGA 104


>gi|307299479|ref|ZP_07579279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914878|gb|EFN45265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 96

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M +V  + C  C  T C++ CPVD           I+   C  CG C   CPV+AI+P++
Sbjct: 1  MPWVREDLCTGC--TLCLKSCPVDGAIVMQGGKAHINNSLCTRCGDCFSACPVNAIRPNS 58

Query: 60 E 60
          E
Sbjct: 59 E 59


>gi|254490538|ref|ZP_05103724.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224464282|gb|EEF80545.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 84

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP     +G     I PD C +C        C   CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNGAISQGAEIYEIDPDLCTECVGHFDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPKDPDHEETH 69


>gi|221211649|ref|ZP_03584628.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD1]
 gi|221169010|gb|EEE01478.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD1]
          Length = 288

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAMVPI 137

Query: 58  -DTEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 138 TGERTGWDAWTQEQADAARE 157


>gi|167725408|ref|ZP_02408644.1| putative molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Burkholderia pseudomallei DM98]
          Length = 239

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ L  +  D+CI C  C   CP  A + D 
Sbjct: 83  SCLHCEDPPCVPVCPTGASYKREEDGLVLVDYDKCIGCKYCTWACPYGARELDE 136


>gi|157377554|ref|YP_001476154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319928|gb|ABV39026.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 563

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           ++ C LC    CV  CP     +G +  A+H    +C+ CG+CE  CP   I
Sbjct: 430 SDKCTLCL--SCVSTCPTQALTDGGDKPALHFVEQDCVQCGLCESACPEKVI 479



 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN------ 70
           C+  CP D     +  + I P  C   G C   CP  AI  D      L   ++      
Sbjct: 208 CLNFCPADAIQSIDKMITIDPYLCHGAGSCTNACPTGAISYDLPTPQALHSYLHKLVTRF 267

Query: 71  SEYATQWPNI 80
            E A   P I
Sbjct: 268 REQAQTAPVI 277



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           ++I+ D+C  C  C   CP  A+    +     +++
Sbjct: 426 VSINSDKCTLCLSCVSTCPTQALTDGGDKPALHFVE 461


>gi|134045694|ref|YP_001097180.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132663319|gb|ABO34965.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 397

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            V + C+ C    CV  CPV           +  D CI C +C   CP +AI 
Sbjct: 130 TVLDECVGCGV--CVSECPVGAISIENEKAVVDKDSCIYCSICAQTCPWNAIF 180



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++ CI C    C + CP D        +A+ P  C  CG+C+  CPVDAI
Sbjct: 198 VDSDLCIGCGD--CTDKCPKDLIVL-NEMIAVPPKGCPACGLCKAACPVDAI 246



 Score = 40.9 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVD-CFYEG-------ENFLAIHP----DECIDCGVCEPECPVDAIK 56
           C+ C    C++ CP +    EG       +  L   P    DEC+ CGVC  ECPV AI 
Sbjct: 94  CVGC--MKCIDACPDNYVGMEGVVEPAKRDITLPKEPITVLDECVGCGVCVSECPVGAIS 151

Query: 57  PDTE 60
            + E
Sbjct: 152 IENE 155



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVD 53
           CI C    CV+ CP      G+          +   P  C  CG C   CP D
Sbjct: 310 CIRCG--ACVQSCPSGALRMGKITHNGKEYERIEFSPKLCDSCGKCVETCPYD 360



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECP 51
             V  ++CI C  + C + CP +  +                ++  D CI CG C  +CP
Sbjct: 157 AVVDKDSCIYC--SICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCP 214

Query: 52  VDAI 55
            D I
Sbjct: 215 KDLI 218


>gi|71892259|ref|YP_277993.1| NADH dehydrogenase subunit I [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|110287759|sp|Q492I3|NUOI_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71796365|gb|AAZ41116.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 181

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 59  ERCVACNL--CAVACPVGCISLKKGESTDGRWYPKFFRINFSRCIFCGMCEEACPTAAIQ 116

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 117 LTPDFEMSDF 126


>gi|313157389|gb|EFR56812.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 290

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYE--GENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLE 64
          CI C    CV+VCP   F +      + +H P+ CI CG C   CP  A++    P  +
Sbjct: 13 CIRCG--RCVKVCPSQIFVQEKAGAAVTLHKPENCIVCGHCAAACPTGAVEHADFPAEK 69


>gi|311694181|gb|ADP97054.1| electron transport complex, RnfABCDGE type, B subunit [marine
           bacterium HP15]
          Length = 140

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-EPGLE 64
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I   T EP + 
Sbjct: 62  DECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVDPCPVDCIDMVTVEPDIR 119

Query: 65  LWL 67
            W 
Sbjct: 120 TWT 122



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 58 VIREDECIGCTKCIQACPVDAI 79


>gi|302388962|ref|YP_003824783.1| BFD domain protein (2Fe-2S)-binding domain protein
          [Thermosediminibacter oceani DSM 16646]
 gi|302199590|gb|ADL07160.1| BFD domain protein (2Fe-2S)-binding domain protein
          [Thermosediminibacter oceani DSM 16646]
          Length = 204

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  V  E C  CK   C +VCPV      +    +  ++C  C  CE  CP  AI
Sbjct: 7  LAVVDEEKCRGCK--TCEKVCPVLAIKMVDRKAKVDEEKCRGCAACEQRCPFYAI 59



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  ++C  C  CE  CPV AIK      
Sbjct: 9  VVDEEKCRGCKTCEKVCPVLAIKMVDRKA 37


>gi|294788068|ref|ZP_06753312.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484361|gb|EFG32044.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 159

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CPVDAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 114



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|284049169|ref|YP_003399508.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM
          20731]
 gi|283953390|gb|ADB48193.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM
          20731]
          Length = 433

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPG 62
          V T +C  C    CV+ C V           I  D CIDCG C   CP  A++       
Sbjct: 11 VNTRHCTGCL--ICVKDCLVQAIRVRNGKAVILSDRCIDCGECIRCCPTRAMEGWADPLT 68

Query: 63 LELWLKINSEYAT 75
               K+N   AT
Sbjct: 69 ELKKYKVNIALAT 81


>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M+Y +  + C  C  + C  +CP      E +    I   +CI CG C   C   AI+
Sbjct: 569 MSYEIDKDKCKGC--SKCARMCPAGAITGEIKKPYTIDQSKCIKCGACMDGCAFKAIQ 624



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             I  D+C  C  C   CP  AI  + +  
Sbjct: 571 YEIDKDKCKGCSKCARMCPAGAITGEIKKP 600


>gi|238759969|ref|ZP_04621122.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236]
 gi|238701796|gb|EEP94360.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236]
          Length = 180

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|237747572|ref|ZP_04578052.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229378934|gb|EEO29025.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 136

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C  C++  CV VCP +      + + +  + CI C  C   CP  A++  ++P  +
Sbjct: 13 CRQCENAPCVNVCPTNALVYSADTVQLIKERCIGCQTCVLACPFGAMEIVSKPVEQ 68


>gi|152994585|ref|YP_001339420.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Marinomonas sp. MWYL1]
 gi|150835509|gb|ABR69485.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Marinomonas
          sp. MWYL1]
          Length = 83

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP +   +G+    I P +C +C        C+  CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPECPNEAISQGDEIYIIDPSKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPLD 62



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 18/29 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             I  DECI+C VCEPECP +AI    E
Sbjct: 1  MSLIITDECINCDVCEPECPNEAISQGDE 29


>gi|15679252|ref|NP_276369.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2622353|gb|AAB85730.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 448

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C++VCP D     E+ L I   D+CI CG C   CP  A+  + E
Sbjct: 394 CIGCGL--CLDVCPEDAISRDESGLMIVDDDKCIHCGACSNICPARAVIFERE 444



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CILC+   C   CPVD               F  I P  CI CG+C   CP DAI
Sbjct: 352 VDTDRCILCE--KCGIHCPVDAIPRTTMKKRSIKGGFTLIDPRLCIGCGLCLDVCPEDAI 409

Query: 56  KPDT 59
             D 
Sbjct: 410 SRDE 413



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E+CI C    C E+CPVD        + +  D CI C  C   CPVDAI
Sbjct: 324 VSEDCISCG--ICSELCPVDAITLRRGSIEVDTDRCILCEKCGIHCPVDAI 372



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C +VCPV    +    L I P++C  C  C  ECP +AI  D 
Sbjct: 177 CTEC--RVCEDVCPVGAIED----LEIDPEKCTLCLKCMRECPSNAIYIDD 221



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +CI C    C+E CP             +   +C  CGVCE  CPV++IK + 
Sbjct: 34 SCITCG--ACMEACPNKAIRRNRYGGYVVDRAKCNACGVCEMTCPVNSIKIED 84



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CV+ CP +     +         CI CG C   CP  AI+
Sbjct: 16 CVKACPTEAIRMIDGRAF----SCITCGACMEACPNKAIR 51



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C  C  T C+E CPV      +  L      C+ CG C   C V
Sbjct: 269 CRDCDETPCIEACPVGTLRMVDGELR---GYCVSCGRCVNVCDV 309


>gi|330994062|ref|ZP_08317992.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp.
           SXCC-1]
 gi|329759008|gb|EGG75522.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp.
           SXCC-1]
          Length = 162

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP +          +G        I   +CI CG+CE  CPVDAI
Sbjct: 61  ERCIACKL--CEATCPAEAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP +AI  + EP  +
Sbjct: 61 ERCIACKLCEATCPAEAITIEAEPRDD 87


>gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 296

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCP       EN     P++CI CG C   C  +A++
Sbjct: 53  ERCVQCG--ACGSVCPSHAHIFDENKHLFEPEKCIRCGACAEVCCTEALE 100


>gi|312372009|gb|EFR20062.1| hypothetical protein AND_20740 [Anopheles darlingi]
          Length = 216

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 115 ERCIACKL--CEAICPAQAITIEAEERSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 171



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 115 ERCIACKLCEAICPAQAITIEAEE 138



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 156 CIYCGF--CQEACPVDAIVEGPNF 177


>gi|302833042|ref|XP_002948085.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f.
           nagariensis]
 gi|300266887|gb|EFJ51073.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f.
           nagariensis]
          Length = 229

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 184



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 128 ERCIACKLCEAICPAQAITIEAEERED 154



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 169 CIYCGF--CQEACPVDAIVEGPNF 190


>gi|317050799|ref|YP_004111915.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945883|gb|ADU65359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurispirillum indicum S5]
          Length = 176

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF----------YEGE-------NFLAIHPDECIDCGV 45
           Y + E CI C    CV+ CP+D             +G+       +   +   ECI CG+
Sbjct: 68  YFIEEKCIACN--MCVKACPIDVIQLEFHREDREVDGKVKKVPVIDKYTVDIGECISCGL 125

Query: 46  CEPECPVDAIKPDTEPGLELWLK----INS-EYATQWPNITTKK 84
           C   CP DA+    E     + K    +N  E A  +P    KK
Sbjct: 126 CAEHCPTDAVFQSQEYETAYYYKELFVMNKDELAMTFPEYIEKK 169



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPD 58
          L    ++CI C +C   CP+D I+ +
Sbjct: 67 LYFIEEKCIACNMCVKACPIDVIQLE 92


>gi|218883674|ref|YP_002428056.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765290|gb|ACL10689.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus
           kamchatkensis 1221n]
          Length = 637

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +V + CI C     +  CP      G     I  + C  CG+C   CP  AI     P  
Sbjct: 572 IVEDKCIGCMACVNLTACPAIIVPAGSKKPIILEELCNGCGLCASICPYKAITVKNTPSP 631

Query: 64  EL 65
           E 
Sbjct: 632 EW 633


>gi|167754888|ref|ZP_02427015.1| hypothetical protein CLORAM_00392 [Clostridium ramosum DSM 1402]
 gi|167704938|gb|EDS19517.1| hypothetical protein CLORAM_00392 [Clostridium ramosum DSM 1402]
          Length = 257

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E CI C    C++VCP++     E  + I  D C+ C  C   CP  AI    E  +E
Sbjct: 176 VDEKCIGC--QTCIKVCPMNNIELIEGKIKI-KDNCMTCLACFHWCPTAAIYMSKEKEIE 232


>gi|149378171|ref|ZP_01895888.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
 gi|149357533|gb|EDM46038.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
          Length = 192

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-EPGLE 64
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I   T EP + 
Sbjct: 114 DECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCIDMITIEPDIR 171

Query: 65  LWL 67
            W 
Sbjct: 172 SWT 174



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D      + +    I  DECI C  C   CPVDAI
Sbjct: 91  VEPQPLDAEHGVEQAKRVAVIREDECIGCTKCIQACPVDAI 131


>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 595

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
           ++Y +  + C  C  T C   CP +   EG+      I  D+CI CG C  +C   AI
Sbjct: 538 LSYTIDADMCKGC--TLCARTCPNNAI-EGKVREPHVIIQDKCIKCGACMEKCKFGAI 592



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I  D C  C +C   CP +AI+       
Sbjct: 540 YTIDADMCKGCTLCARTCPNNAIEGKVREPH 570


>gi|126437798|ref|YP_001073489.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. JLS]
 gi|126237598|gb|ABO00999.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 558

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NC  C    C   CP D      EG +      D C  CG C  +CPV AI+   E
Sbjct: 504 NCFECDG--CYGACPEDAIIKVAEGHHGYEFVYDRCTGCGACFEQCPVHAIEMLPE 557


>gi|78222455|ref|YP_384202.1| ferredoxin family protein [Geobacter metallireducens GS-15]
 gi|78193710|gb|ABB31477.1| Ferredoxin family protein [Geobacter metallireducens GS-15]
          Length = 96

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          E CI C    CV VCP   F  +G        D C++CG C   CPV AI+ D+
Sbjct: 18 EACIGCG--MCVAVCPHGVFALQGNKAEMQDFDACMECGACAVNCPVGAIEVDS 69


>gi|326562847|gb|EGE13135.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 103P14B1]
 gi|326577018|gb|EGE26913.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 101P30B1]
          Length = 182

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   C+ CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  + + N  Y  +   I+   +   
Sbjct: 118 LTPDFELGEYDRQNLVYEKEHLLISGVGKYPE 149


>gi|262376638|ref|ZP_06069866.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308348|gb|EEY89483.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 87

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  Y GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIYMGELIYEIHPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P     +E   ++ ++Y
Sbjct: 59 I-PLDPNHVETQEQLQAKY 76


>gi|262274542|ref|ZP_06052353.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
 gi|262221105|gb|EEY72419.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
          Length = 194

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  ++CI C  T C++ CPVD        +  +  DEC  C +C   CP D I+
Sbjct: 107 AFIHEDDCIGC--TKCIQACPVDAIVGSTKAMHTVIKDECTGCDLCVAPCPTDCIE 160


>gi|222444426|ref|ZP_03606941.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433991|gb|EEE41156.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii
           DSM 2375]
          Length = 343

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD 53
           CI CK   C++ CPV   + E +  + ++P +CI CG C   CPV+
Sbjct: 128 CIRCK--KCMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCPVN 171



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 18/69 (26%)

Query: 8   NCILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCEPECP 51
            CI C    C EVCP +                     +    I    CI C  C  +CP
Sbjct: 82  ACIRCGF--CAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCP 139

Query: 52  VDAIKPDTE 60
           V AI  + +
Sbjct: 140 VGAIHVEDD 148



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 4  VVTENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          V+ E CI C    C+  CP            D   EG  +  I+   CI CG C   CP 
Sbjct: 38 VIKEYCIGCG--ACISSCPSPNAIKLVRDEDDETKEGITYPIINKSACIRCGFCAEVCPT 95

Query: 53 D 53
          +
Sbjct: 96 E 96



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +E C  C    C+  CP       E  + +  + ++C+ C +C   CP   IK 
Sbjct: 259 SETCKKC--QMCIPDCPTKAISFDEKNDTIVRNENKCLRCSICYQSCPFSTIKY 310


>gi|212704668|ref|ZP_03312796.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098]
 gi|212671902|gb|EEB32385.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098]
          Length = 653

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V  + C+ C    C+  CP     E    GE    +    C  CGVC   CP  AI+   
Sbjct: 580 VDNKRCVACG--KCIRCCPFGAITEVEFRGEKKAQVIETVCQGCGVCTSTCPQGAIQLSH 637

Query: 60  EPGLELWLKINS 71
               ++  ++N+
Sbjct: 638 ATDNQILAEVNA 649



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 28/85 (32%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYE---------------GENFLAIHPDECID 42
           TYV    C  C    C E CP     D F E                     I+P+ C  
Sbjct: 235 TYVDWSLCTGCG--ACTEKCPSKKTPDAFNEFTGPTTAINIAFPQAIPKKAVINPEYCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AIK D +  
Sbjct: 293 MTKGKCGVCAKVCPTGAIKYDMQDE 317


>gi|194745003|ref|XP_001954982.1| GF16476 [Drosophila ananassae]
 gi|190628019|gb|EDV43543.1| GF16476 [Drosophila ananassae]
          Length = 217

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|123441683|ref|YP_001005667.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|156633543|sp|A1JLI2|NUOI_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122088644|emb|CAL11439.1| NADH Dehydrogenase I chain I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 180

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|21226237|ref|NP_632159.1| ferredoxin oxidoreductase [Methanosarcina mazei Go1]
 gi|20904473|gb|AAM29831.1| Ferredoxin oxidoreductase [Methanosarcina mazei Go1]
          Length = 438

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI CK     E CP+    +GEN    +P+ C +CG+C   C  +A
Sbjct: 333 CINCKVCPVAEACPMGAVSKGENGAEHNPELCFNCGLCISRCRGEA 378


>gi|30248970|ref|NP_841040.1| 3Fe-4S ferredoxin [Nitrosomonas europaea ATCC 19718]
 gi|30138587|emb|CAD84878.1| 3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
          [Nitrosomonas europaea ATCC 19718]
          Length = 89

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I  D C +C        C   CPV  
Sbjct: 1  MALIITDECINCDV--CEPECPNRAISQGEEIYEIDSDLCTECVGHYNTPQCVEVCPVSC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IVGDPD 64


>gi|114319377|ref|YP_741060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225771|gb|ABI55570.1| phenylacetyl-CoA:acceptor oxidoreductase PadC subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 249

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C+   CV VCP    Y+  +    + +  ++CI C  C   CP        E  L
Sbjct: 57  PCMQCEDPSCVHVCPTRATYKDPDAGGIVFVDWNKCIGCKYCMIACPYGVRFYADEQPL 115


>gi|294778024|ref|ZP_06743458.1| glycyl-radical enzyme activating family protein [Bacteroides
          vulgatus PC510]
 gi|294448082|gb|EFG16648.1| glycyl-radical enzyme activating family protein [Bacteroides
          vulgatus PC510]
          Length = 302

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C++ CP          +     +C+ CG C  ECP  AI+
Sbjct: 53 CLGCG--TCLKACPNGALTLAPEGIITDKQKCVLCGRCAEECPAMAIE 98



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 21 CPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C           G++ L     +C+ CG C   CP  A
Sbjct: 27 CPLSCIWCHNPEGIRNGKDKLY-TAKKCLGCGTCLKACPNGA 67


>gi|289662868|ref|ZP_06484449.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 139

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
            ++V  +CI C  T C++ CPVD    G   +   I P  C  C +C P CPVD I+
Sbjct: 81  AWIVEADCIGC--TKCIQACPVDAIVGGAKHMHTVIAP-LCTGCELCLPACPVDCIE 134


>gi|288573330|ref|ZP_06391687.1| Fe-S cluster domain protein [Dethiosulfovibrio peptidovorans DSM
          11002]
 gi|288569071|gb|EFC90628.1| Fe-S cluster domain protein [Dethiosulfovibrio peptidovorans DSM
          11002]
          Length = 436

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V    C  C    C++VCP +     +  + I P+ C+DCG C  +C   AI
Sbjct: 8  VQLSACRGC--ARCIKVCPTEAMRVLDGKVMIIPELCVDCGECIRKCEDRAI 57


>gi|254793288|ref|YP_003078125.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O157:H7
           str. TW14359]
 gi|254592688|gb|ACT72049.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O157:H7
           str. TW14359]
          Length = 222

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|288941047|ref|YP_003443287.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288896419|gb|ADC62255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Allochromatium vinosum DSM 180]
          Length = 205

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  C+ VCP     +  N +  +  + C+ CG C   CP  A  P T   +  
Sbjct: 61  CNHCDNPPCMTVCPTGATQKKANGIVFVDQELCMGCGACAMACPYHARVPVTRRDMRQ 118


>gi|237665790|ref|ZP_04525778.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|237658737|gb|EEP56289.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 362

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C + CP       +N + I    C  CG+CE  CP  AI 
Sbjct: 312 DKCTNC--RLCEKACPYFAITSIDNQIKIDTKNCFGCGLCESRCPSKAIY 359



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
             +  I+ D+C +C +CE  CP  AI
Sbjct: 304 PEYPLINKDKCTNCRLCEKACPYFAI 329


>gi|222529000|ref|YP_002572882.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455847|gb|ACM60109.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 598

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           + + +NC+ CK    V  CP     E EN  + I    C  CG+C+  CP  AI+
Sbjct: 540 FKINQNCLKCKVCLNVTGCP--AIDEDENGNIFIDSVLCKGCGLCKNFCPYYAIE 592


>gi|198274020|ref|ZP_03206552.1| hypothetical protein BACPLE_00157 [Bacteroides plebeius DSM 17135]
 gi|198273098|gb|EDY97367.1| hypothetical protein BACPLE_00157 [Bacteroides plebeius DSM 17135]
          Length = 268

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           T+ C  C   +C+EVCP    +  E+  +I  D  +CI C  C   CP +A +  T 
Sbjct: 195 TDGCFACG--ECIEVCPTHAIHFSEDQSSIETDIHKCIKCCACVKCCPNEAREFSTP 249


>gi|240849392|ref|NP_001155795.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondri
           [Acyrthosiphon pisum]
 gi|239789288|dbj|BAH71275.1| ACYPI009382 [Acyrthosiphon pisum]
          Length = 206

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 105 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 146 CIYCGF--CQEACPVDAIVEGPNFEY 169



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 105 ERCIACKLCEAICPAQAITIEAEERAD 131


>gi|126460291|ref|YP_001056569.1| putative ATPase RIL [Pyrobaculum calidifontis JCM 11548]
 gi|126250012|gb|ABO09103.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
          Length = 589

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 7  ENC--ILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + C    C H +CV+ CPV+         E      I    CI CG+C  +CP DAI   
Sbjct: 10 DACQPRKCGH-ECVKYCPVNKSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFDAITIV 68

Query: 59 TEPGL 63
            P  
Sbjct: 69 NLPDE 73


>gi|15897231|ref|NP_341836.1| putative ATPase RIL [Sulfolobus solfataricus P2]
 gi|284174476|ref|ZP_06388445.1| putative ATPase RIL [Sulfolobus solfataricus 98/2]
 gi|13813430|gb|AAK40626.1| RNase L inhibitor [Sulfolobus solfataricus P2]
 gi|261601897|gb|ACX91500.1| ABC transporter related protein [Sulfolobus solfataricus 98/2]
          Length = 600

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          E       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 20 CINFCPVDRSGGKAIELSEIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 79

Query: 64 ELWLKIN 70
              K+N
Sbjct: 80 IHRYKVN 86


>gi|46195430|ref|NP_659119.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Mus musculus]
 gi|47117242|sp|Q8K3J1|NDUS8_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|22074762|gb|AAM34451.1| NADH dehydrogenase:ubiquinone Fe-S protein 8 [Mus musculus]
 gi|56540975|gb|AAH86766.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus]
 gi|74139889|dbj|BAE31784.1| unnamed protein product [Mus musculus]
 gi|74150399|dbj|BAE32243.1| unnamed protein product [Mus musculus]
 gi|74204045|dbj|BAE29018.1| unnamed protein product [Mus musculus]
 gi|74204318|dbj|BAE39914.1| unnamed protein product [Mus musculus]
 gi|74227922|dbj|BAE37960.1| unnamed protein product [Mus musculus]
 gi|148701022|gb|EDL32969.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus
           musculus]
 gi|148701023|gb|EDL32970.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus
           musculus]
          Length = 212

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAICPAQAITIEAEPRAD 137



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|330998795|ref|ZP_08322523.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Parasutterella
           excrementihominis YIT 11859]
 gi|329576292|gb|EGG57808.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Parasutterella
           excrementihominis YIT 11859]
          Length = 468

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFL-AI-HPDECIDCGVCEPECPVDAIKPDTE 60
           NC+ C   +C  VCP +     G++ +  I + D C  CGVC  ECP  AIK + E
Sbjct: 413 NCLQCD--NCYGVCPDNAVIKTGDDNVPYIFNYDYCKGCGVCASECPCGAIKMEPE 466


>gi|319782990|ref|YP_004142466.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168878|gb|ADV12416.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 163

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118

Query: 56  ------KPDTEPGLELWLKINSEYA 74
                 +  TE   EL+   +   A
Sbjct: 119 VEGPNFEFATETREELYYDKDRLLA 143


>gi|304315176|ref|YP_003850323.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
 gi|302588635|gb|ADL59010.1| HycB-related protein [Methanothermobacter marburgensis str.
          Marburg]
          Length = 128

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C  C    C+  C V  F        I P+ C+ C +C   CP   I  + 
Sbjct: 40 CRQCSDAPCLRACRVGAFKIINKIPVIDPERCVGCRLCLEACPEGCIIFED 90


>gi|291280504|ref|YP_003497339.1| ferredoxin-dependent glutamate synthase subunit beta [Deferribacter
           desulfuricans SSM1]
 gi|290755206|dbj|BAI81583.1| ferredoxin-dependent glutamate synthase, beta subunit
           [Deferribacter desulfuricans SSM1]
          Length = 777

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 9/54 (16%)

Query: 7   ENCILCKHTD----CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
           + C+ C        C +VCP          +G       P++CI CG+C   CP
Sbjct: 708 DRCMSCGFCRDCEMCKDVCPEQAIVRIQNDDGTFEYYSDPNKCIGCGICAGVCP 761


>gi|269215524|ref|ZP_06159378.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit [Slackia
           exigua ATCC 700122]
 gi|269131011|gb|EEZ62086.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit [Slackia
           exigua ATCC 700122]
          Length = 580

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y V  +C  CK   CV++ CP   F    N  +I P  C+ C  C   CP   I  ++E 
Sbjct: 522 YAVKPDCRGCK--MCVQIGCPSISFDLSSNVASIDPALCVGCSQCAQVCPFSVIVKESEA 579


>gi|262165512|ref|ZP_06033249.1| NrfC protein [Vibrio mimicus VM223]
 gi|262025228|gb|EEY43896.1| NrfC protein [Vibrio mimicus VM223]
          Length = 228

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACPYQ 145


>gi|221199573|ref|ZP_03572617.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2M]
 gi|221205527|ref|ZP_03578542.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2]
 gi|221174365|gb|EEE06797.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2]
 gi|221180858|gb|EEE13261.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2M]
          Length = 288

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 80  AFIDENLCIGC--TLCMQACPVDAIVGAPKQMHTIVASLCTGCDLCVPPCPVDCIAMVPV 137

Query: 58  -DTEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 138 TGERTGWDAWTQEQADAARE 157


>gi|126656501|ref|ZP_01727762.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cyanothece sp.
          CCY0110]
 gi|126622187|gb|EAZ92894.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cyanothece sp.
          CCY0110]
          Length = 120

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M+Y +T  CI C    C   CP       +N   I    C DC        C   CP +
Sbjct: 1  MSYTITNECINC--HRCRSACPTGAITIQDNVFLIDATLCNDCHGYYGTPQCASVCPTN 57



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
                +ECI+C  C   CP  AI
Sbjct: 1  MSYTITNECINCHRCRSACPTGAI 24


>gi|116749158|ref|YP_845845.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698222|gb|ABK17410.1| glutamate synthase (NADPH) GltB3 subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 777

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN------FLAIHPDECIDCGVCEPECP 51
            C  C    CV +CP       E        + + PD CI CG C   CP
Sbjct: 717 ACRDCG--ICVTMCPQTAISRQEKDNPFGFEMVVDPDRCIGCGFCAGSCP 764


>gi|319940750|ref|ZP_08015091.1| hydrogenase [Sutterella wadsworthensis 3_1_45B]
 gi|319805810|gb|EFW02584.1| hydrogenase [Sutterella wadsworthensis 3_1_45B]
          Length = 456

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
          ++  ++C+ C    C + CP D    G      I  D C+ CG C   CP +AI+ 
Sbjct: 39 HINKDHCVGCD--TCRKFCPTDAIKGGLGAKHEIIDDACLYCGQCLVACPFNAIEQ 92



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          + I+ D C+ C  C   CP DAIK
Sbjct: 38 IHINKDHCVGCDTCRKFCPTDAIK 61


>gi|308049947|ref|YP_003913513.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632137|gb|ADN76439.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
          Length = 184

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
            Y+    CI C  T C++ CPVD     G+    +  D+C  C +C   CPVD I+
Sbjct: 107 AYIREAECIGC--TKCIQACPVDAIIGTGKQMHTVLADQCTGCDLCVEPCPVDCIE 160



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 18  VEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D   +       I   ECI C  C   CPVDAI
Sbjct: 91  VEPEPLDADADSRPKVAYIREAECIGCTKCIQACPVDAI 129


>gi|305432890|ref|ZP_07402048.1| ferredoxin [Campylobacter coli JV20]
 gi|304444044|gb|EFM36699.1| ferredoxin [Campylobacter coli JV20]
          Length = 113

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T++CI C    C++ CPV          EGE+   ++ D+C++C        C  
Sbjct: 20 MAVKITDSCIACG--SCIDECPVSAIVDDANNPEGEDRYYVYADKCVECVGHNDQPACAS 77

Query: 49 ECPVD 53
           CP D
Sbjct: 78 ACPTD 82



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 15/30 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          G+       D CI CG C  ECPV AI  D
Sbjct: 17 GDKMAVKITDSCIACGSCIDECPVSAIVDD 46


>gi|294102249|ref|YP_003554107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617229|gb|ADE57383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
          Length = 220

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E CI C  T C   CPV+    E +    I  ++C+ CG C   CP DAI  
Sbjct: 153 VDEEKCIGC--TKCARNCPVNAISGELKKPHVIDKEKCVGCGKCAELCPKDAIHQ 205



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI CK   C+ VCP +     E E  + IH D C  C  C   CPV  
Sbjct: 64  ERCIGCKL--CIRVCPANAIEFLEEEKKIQIHVDRCCFCAQCTEICPVKC 111



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 24  DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           D   E      +  ++CI C  C   CPV+AI  + +   
Sbjct: 142 DIVVESAVKYEVDEEKCIGCTKCARNCPVNAISGELKKPH 181



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEP 61
            + CI C +C   CP +AI+   E 
Sbjct: 62 DKERCIGCKLCIRVCPANAIEFLEEE 87


>gi|224369237|ref|YP_002603401.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223691954|gb|ACN15237.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 355

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             V ++ C  C+   C+E C +D     ++    ++ D CI CG+C   CP  AI  + +
Sbjct: 272 ARVDSDLCTGCE--TCLERCQMDAILLDQDMHALVNRDRCIGCGLCVTTCPTAAITLEQK 329

Query: 61  PGL 63
              
Sbjct: 330 DTD 332


>gi|254173159|ref|ZP_04879832.1| hydrogenase-4 component b [Thermococcus sp. AM4]
 gi|214032568|gb|EEB73397.1| hydrogenase-4 component b [Thermococcus sp. AM4]
          Length = 201

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYE-----GENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  E CI C    CV  CP D    E     G   L  +   CI C  C   CP  A+
Sbjct: 47  PHINPEKCIGCG--ACVNACPPDALILEWDKEHGVKRLTFNAARCIRCHRCVEVCPTGAM 104

Query: 56  KP 57
           +P
Sbjct: 105 EP 106



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I+P++CI CG C   CP DA+  + +   
Sbjct: 48 HINPEKCIGCGACVNACPPDALILEWDKEH 77


>gi|254173494|ref|ZP_04880166.1| RNase L inhibitor [Thermococcus sp. AM4]
 gi|214032186|gb|EEB73016.1| RNase L inhibitor [Thermococcus sp. AM4]
          Length = 589

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP +AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYRPVIQEASCTGCGICVHKCPFNAI 66


>gi|210615651|ref|ZP_03290697.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
 gi|210150194|gb|EEA81203.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
          Length = 263

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI CK   C +VCP D     +N   I P++C +CG+C  +CP
Sbjct: 218 CIGCK--MCQKVCPSDAIVVEDNIAHIDPEKCTNCGLCAEKCP 258



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
               CV+ CP D  +  +    +  D C  CG C   CP
Sbjct: 146 GFGSCVKACPFDAIHIVDGVAVVDKDACKACGKCVAACP 184



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 18/75 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCP--------------VDCFYE--GENFLAIHPDECIDCGV 45
             V  + C  C    CV  CP              V C  +  G++ L++    CI C +
Sbjct: 166 AVVDKDACKACG--KCVAACPKHLVELVPYEQKHLVQCSSKDKGKDVLSVCKVGCIGCKM 223

Query: 46  CEPECPVDAIKPDTE 60
           C+  CP DAI  +  
Sbjct: 224 CQKVCPSDAIVVEDN 238


>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 626

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M+Y +  + C  C  + C  +CP      E +    I   +CI CG C   C   AI+
Sbjct: 569 MSYEIDKDKCKGC--SKCARMCPAGAITGEIKKPYTIDQSKCIKCGACMDGCAFKAIQ 624



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             I  D+C  C  C   CP  AI  + +  
Sbjct: 571 YEIDKDKCKGCSKCARMCPAGAITGEIKKP 600


>gi|170581266|ref|XP_001895608.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158597368|gb|EDP35534.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 206

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 105 ERCIACKL--CEAICPAQAITIEAEARPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 161



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 146 CIYCGL--CQEACPVDAIVEGPNFEY 169



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 105 ERCIACKLCEAICPAQAITIEAEA 128


>gi|117925794|ref|YP_866411.1| hydrogenase 2 protein HybA [Magnetococcus sp. MC-1]
 gi|117609550|gb|ABK45005.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 340

 Score = 52.1 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV  CPV           +  H D CI C  C   CP +  + + +     
Sbjct: 113 SCMHCVDPGCVSACPVTAMRRNSLTGIVTHHADACIGCRTCMTGCPYNVPQFEYDKPFGQ 172


>gi|328952561|ref|YP_004369895.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452885|gb|AEB08714.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1042

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 32/92 (34%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGEN---------------FLAIHPDECI--- 41
           Y+  + CI C    C E CP      F EG N                 AI PD CI   
Sbjct: 118 YIDMDRCIACGV--CAEKCPYKAADEFNEGLNQRKAAYVKYPQAVPLKYAIDPDRCIYFK 175

Query: 42  --------DCGVCEPECPVDAI-KPDTEPGLE 64
                    CG CE  CP  A+   D +   +
Sbjct: 176 PDKKGKIGRCGACEKFCPAGAVNFLDVDQEQQ 207



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 15/56 (26%)

Query: 9    CILCKHTDCVEVCPVDCF---------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C   CP             Y  EN  A     C  CGVC   CP  AI
Sbjct: 969  CIGCGL--CEASCPFAAIRLIQVPGKGYRAENITA----SCKGCGVCAAACPQRAI 1018



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           +    CI CG+CE  CP  AI+
Sbjct: 964 VDAYLCIGCGLCEASCPFAAIR 985


>gi|319789166|ref|YP_004150799.1| NIL domain protein [Thermovibrio ammonificans HB-1]
 gi|317113668|gb|ADU96158.1| NIL domain protein [Thermovibrio ammonificans HB-1]
          Length = 138

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP + FY            D+C+ CG C P CP+  I 
Sbjct: 85  EKCVHCG--ACIAPCPTNAFYLDRETFRVEFDKDKCVGCGHCIPACPLRIIY 134



 Score = 33.6 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           ++C+ CG C   CP +A   D E
Sbjct: 85  EKCVHCGACIAPCPTNAFYLDRE 107


>gi|302390108|ref|YP_003825929.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302200736|gb|ADL08306.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 584

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 3   YVVTEN-CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y ++E  C  C    C+ + CP        + + I+P  C+ C VC   CP  AI+
Sbjct: 528 YTISEEKCRRC--RMCLRLGCP--AIQVRGDVIFINPINCVGCAVCVQVCPFGAIE 579


>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 626

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V+  E CI C    C  VCPV     E +    I    C+ CG C   C   A+K
Sbjct: 571 FVILAEKCIGCG--ACAYVCPVKAIKGEKKKPHHIDEKVCVKCGRCFEICRFQAVK 624



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           VTE    C   +C+ +              I  ++CI CG C   CPV AIK + +   
Sbjct: 555 VTE--RRCSAGECMAL----------RRFVILAEKCIGCGACAYVCPVKAIKGEKKKPH 601


>gi|209737012|gb|ACI69375.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + EP
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEP 132



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECP 51
            YV+  E C  C    CV+ CP      G++ ++I   ++C  CG C   CP
Sbjct: 561 AYVIDPEQCRAC--QLCVKKCPAGAIDGGKDLVSIIDQEKCTKCGTCFEVCP 610



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I P++C  C +C  +CP  AI
Sbjct: 562 YVIDPEQCRACQLCVKKCPAGAI 584


>gi|87196499|ref|NP_777243.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Bos taurus]
 gi|81674803|gb|AAI09907.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Bos taurus]
          Length = 212

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAVCPAQAIIIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAVCPAQAIIIEAEPRAD 137



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|15678429|ref|NP_275544.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621463|gb|AAB84907.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 337

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ + CI C    CV+ CPV              D C+ CG C   CPVDAI+
Sbjct: 199 VLEDRCIGCGL--CVDECPVGVIEPEVPAPVKILDGCVFCGRCRGVCPVDAIE 249



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CPVD        + +  D CI CG C+  CPV A++ + E  
Sbjct: 284 CQRCGV--CVNHCPVDAMTLNTE-VEVDADRCILCGECQDICPVTAVRLNLEDD 334



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2   TYVVTE-NCILCKHTDCVEVCP-VDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V+ + +CI C    C  VCP       G       I P  C  C  C   CP  AI+ 
Sbjct: 47  AVVINQRDCIGC--MTCTRVCPSRGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAIRY 104

Query: 58  DTEP-GLELWLKIN 70
            +     E + K+N
Sbjct: 105 SSRKRAYENFSKLN 118



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPG 62
           D CI CG+C  ECPV  I+P+    
Sbjct: 202 DRCIGCGLCVDECPVGVIEPEVPAP 226



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPV-DAIK 56
          + C+ C +  C   CP +    GE           + I+  +CI C  C   CP   AIK
Sbjct: 15 DKCVRCSY--CARACPTEAIKYGEILPRSVVGGKAVVINQRDCIGCMTCTRVCPSRGAIK 72



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 28 EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          E      I  D+C+ C  C   CP +AIK 
Sbjct: 5  ETGVHSEIDEDKCVRCSYCARACPTEAIKY 34



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 24/80 (30%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL----------------------AIHPDECID 42
           + + C+ C    C  VCPVD     E                          +    C  
Sbjct: 229 ILDGCVFCG--RCRGVCPVDAIEITEEGFRARDGRIYLERRVLTGPRRGSVEVDHMVCQR 286

Query: 43  CGVCEPECPVDAIKPDTEPG 62
           CGVC   CPVDA+  +TE  
Sbjct: 287 CGVCVNHCPVDAMTLNTEVE 306


>gi|50085926|ref|YP_047436.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter sp. ADP1]
 gi|49531902|emb|CAG69614.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter sp. ADP1]
          Length = 87

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +TE CI C    C  VCP +  Y GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITEECINCDV--CEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IPKDPDHEETQ 69


>gi|330958152|gb|EGH58412.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 174

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 117

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 118 LTPDFEMADF 127


>gi|303243651|ref|ZP_07329992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485893|gb|EFL48816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 426

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y++ EN CI C    C +VC VD             I+P+ C+ CG+C  ECPVDAI
Sbjct: 312 YIIDENKCIGC--RICYKVCNVDNAISISSETRLPYINPEYCVRCGLCYRECPVDAI 366



 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLEL 65
           E C+ C  + C  VCPVD          I  + CI C  C   CPV DAIK   E  L+ 
Sbjct: 126 ELCVNC--SSCKLVCPVDAIDYNGVSHVIDKNICIGCNRCIDACPVIDAIKTYDEKILKE 183

Query: 66  WLK 68
            + 
Sbjct: 184 KID 186



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPVD-AIKP 57
            CI C   +C+EVCP +    GE             I  ++CI C +C   C VD AI  
Sbjct: 280 ECIKCG--ECIEVCPTNAMRIGEIPRIPKIRDKCYIIDENKCIGCRICYKVCNVDNAISI 337

Query: 58  DTE 60
            +E
Sbjct: 338 SSE 340



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 17/63 (26%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGVCEPECPV 52
           +CI C   +CVE CP      G                  L I  + C++C  C+  CPV
Sbjct: 83  SCISCG--NCVESCPTKVLEIGVLMKETEGLPWNVPKYTNLIIDEELCVNCSSCKLVCPV 140

Query: 53  DAI 55
           DAI
Sbjct: 141 DAI 143



 Score = 41.3 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +V   CI C   +CV+VCP   + + +N+  +   ECI CG C   CP +A
Sbjct: 252 IVKSLCISCG--NCVDVCPG--YIDLKNYNVV---ECIKCGECIEVCPTNA 295



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 8/61 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAI 55
           T V  E CI C    C   CP        N         I    CI CG C   CP   +
Sbjct: 42  TVVYPEKCISCG--ACKGSCPSFAIELVNNPKYNKKIPEIDVGSCISCGNCVESCPTKVL 99

Query: 56  K 56
           +
Sbjct: 100 E 100



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++P++CI CG C+  CP  AI+    P
Sbjct: 43 VVYPEKCISCGACKGSCPSFAIELVNNP 70


>gi|288931276|ref|YP_003435336.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Ferroglobus placidus DSM 10642]
 gi|288893524|gb|ADC65061.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Ferroglobus placidus DSM 10642]
          Length = 97

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V  E CI C    CV+ CP  C      +G     +  D C  CG+C   CPV+AI+ 
Sbjct: 29 AFVDEEKCIGCG--RCVKFCPEPCIELVEKDGNKVAKVDHDYCKGCGICASVCPVNAIRM 86

Query: 58 DTEP 61
          +T+ 
Sbjct: 87 ETKE 90


>gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
          Length = 184

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           ++  E C  C  T C  +CPV+    G+  +   I P  CI CG C   C   AI 
Sbjct: 130 FINPEKCKGC--TLCARMCPVNAIT-GDKKVPHVIDPQTCIRCGSCIERCKFGAIY 182



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
              I+P++C  C +C   CPV+AI  D +   
Sbjct: 128 QYFINPEKCKGCTLCARMCPVNAITGDKKVPH 159


>gi|154500597|ref|ZP_02038635.1| hypothetical protein BACCAP_04270 [Bacteroides capillosus ATCC
          29799]
 gi|150270486|gb|EDM97795.1| hypothetical protein BACCAP_04270 [Bacteroides capillosus ATCC
          29799]
          Length = 557

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      ++   I PDECI CG C   CP +A
Sbjct: 11 NCKNC--YKCIRNCPVKSIRFSDHQANIVPDECILCGRCFVACPQNA 55


>gi|187927967|ref|YP_001898454.1| ferredoxin [Ralstonia pickettii 12J]
 gi|187724857|gb|ACD26022.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12J]
          Length = 276

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEP 61
           E CI C  T C++ CPVD        +  +  D C  C +C P CPVD I          
Sbjct: 92  ERCIGC--TLCIQACPVDAIVGAPKAMHTVLEDWCTGCDLCVPPCPVDCIDMIPITGERT 149

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 150 GWDAWSQQQADVAR 163



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           P +   +      I P+ CI C +C   CPVDAI
Sbjct: 76  PSNGIEQPRAIAVIDPERCIGCTLCIQACPVDAI 109


>gi|91975813|ref|YP_568472.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5]
 gi|123735639|sp|Q13BG8|NUOI1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|91682269|gb|ABE38571.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB5]
          Length = 171

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C                   I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAVVCPVGCIDLTKAVADDGRWYPEHFRINFARCIFCGFCEEACPTSAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 107 LTPDFELGEW 116


>gi|46204691|ref|ZP_00049610.2| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 196

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 21 CPVDCFYEGENFLAIHP--------DECIDCGVCEPECPVDAIKPDTEP 61
           P +  + G  F   H         + CI C +CE  CP  AI  +  P
Sbjct: 35 YPFEMGHRGPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCG--MCQEACPVDAIVEGPNF 123


>gi|307822859|ref|ZP_07653090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylobacter tundripaludum SV96]
 gi|307736463|gb|EFO07309.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylobacter tundripaludum SV96]
          Length = 81

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++ E CI C    C   CP     +G++   I+PD C +C        C   CPVD 
Sbjct: 1  MALIINEECINCDV--CEPECPNGAISQGDDIYIINPDLCTECIGHHDLPQCMEVCPVDC 58

Query: 55 IKPDTEP 61
          I  D + 
Sbjct: 59 IDKDAKH 65


>gi|294636197|ref|ZP_06714614.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291090498|gb|EFE23059.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 190

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C+   CV VCP    +  E+ +  +    CI C  C   CP      D   G
Sbjct: 61  SCQHCEAAPCVAVCPTGASFRDEDGIVQVDQSRCIGCDYCVAACPFHVRYLDPRSG 116


>gi|227114814|ref|ZP_03828470.1| putative anaerobic reductase chain B (DMSO reductase iron-sulfur
           subunit) [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 208

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    +   E+ L  +  + C+ C  CE  CP  A + D
Sbjct: 59  SYYLSIACNHCDDPTCVAGCPTGAMHKRKEDGLVLVDENVCVGCRYCEMRCPYGAPQFD 117


>gi|226950711|ref|YP_002805802.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A2 str. Kyoto]
 gi|226842543|gb|ACO85209.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A2 str. Kyoto]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|261340669|ref|ZP_05968527.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus
           ATCC 35316]
 gi|296103962|ref|YP_003614108.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|288317083|gb|EFC56021.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus
           ATCC 35316]
 gi|295058421|gb|ADF63159.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098080|emb|CBK87170.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  SERCVACNL--CAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  KPDTEPGLELW 66
           +   +  L  +
Sbjct: 115 QLTPDFELGEY 125


>gi|218558540|ref|YP_002391453.1| 4Fe-4S ferridoxin-type subunit of oxidoreductase [Escherichia coli
           S88]
 gi|218689614|ref|YP_002397826.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli ED1a]
 gi|218365309|emb|CAR03030.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli S88]
 gi|218427178|emb|CAR08062.2| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli ED1a]
          Length = 222

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 90  QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 149

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 150 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 185


>gi|168183587|ref|ZP_02618251.1| electron transfer flavoprotein, alpha subunit/FixB family
          [Clostridium botulinum Bf]
 gi|237796726|ref|YP_002864278.1| electron transfer flavoprotein subunit alpha/FixB family protein
          [Clostridium botulinum Ba4 str. 657]
 gi|182673296|gb|EDT85257.1| electron transfer flavoprotein, alpha subunit/FixB family
          [Clostridium botulinum Bf]
 gi|229261514|gb|ACQ52547.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum Ba4 str. 657]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|168179067|ref|ZP_02613731.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum NCTC 2916]
 gi|182670138|gb|EDT82114.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum NCTC 2916]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|167844880|ref|ZP_02470388.1| ferredoxin [Burkholderia pseudomallei B7210]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I     
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCIAMIPV 137

Query: 58  -DTEPGLELWLKINSEYAT 75
                G + W +  ++ A 
Sbjct: 138 TGERTGWDAWSQQQADAAR 156


>gi|153938285|ref|YP_001392631.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum F str. Langeland]
 gi|152934181|gb|ABS39679.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum F str. Langeland]
 gi|295320617|gb|ADG00995.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum F str. 230613]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|28898701|ref|NP_798306.1| nitrite reductase Fe-S protein NrfC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840172|ref|ZP_01992839.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ3810]
 gi|260363700|ref|ZP_05776484.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus K5030]
 gi|260879733|ref|ZP_05892088.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260898793|ref|ZP_05907234.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus Peru-466]
 gi|260901606|ref|ZP_05910001.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28806919|dbj|BAC60190.1| nitrite reductase, Fe-S protein (NrfC) [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746172|gb|EDM57292.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ3810]
 gi|308086597|gb|EFO36292.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308093420|gb|EFO43115.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308108690|gb|EFO46230.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308113400|gb|EFO50940.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus K5030]
          Length = 228

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           E+C  C +  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 95  ESCQHCDNPPCVYVCPTGAAYKDESTGIVDVHKERCVGCGYCLAACPYQ 143


>gi|238794600|ref|ZP_04638207.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC
           29909]
 gi|238726086|gb|EEQ17633.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC
           29909]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|114561242|ref|YP_748755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332535|gb|ABI69917.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 559

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           M  + +E C LC    CV  CP     +G +   L     +C+ CG+CE  CP + I
Sbjct: 421 MVSINSEKCTLCL--SCVATCPTQALKDGGDAPALKFVEQDCVQCGLCEAACPENVI 475



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 4   VVTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V ++ C   KH       C+  CP D      + + I P  C   G C   CP  A+  D
Sbjct: 181 VNSDICAHDKHGLNGCNRCLNFCPADAISSVAHKIEIDPYLCHGAGSCTNACPTGALSYD 240

Query: 59  --TEPGLELWLK 68
             T   L  +L+
Sbjct: 241 LPTPASLHTYLE 252



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            ++I+ ++C  C  C   CP  A+K   +     +++
Sbjct: 421 MVSINSEKCTLCLSCVATCPTQALKDGGDAPALKFVE 457


>gi|332999450|gb|EGK19035.1| hydrogenase-4 component A [Shigella flexneri VA-6]
          Length = 175

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 58  CRQCEDAPCANVCPNGAISCDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 110


>gi|302039151|ref|YP_003799473.1| 2-ketoisovalerate ferredoxin reductase subunits gamma/delta
           [Candidatus Nitrospira defluvii]
 gi|300607215|emb|CBK43548.1| 2-ketoisovalerate ferredoxin reductase, fused gamma and delta
           subunit [Candidatus Nitrospira defluvii]
          Length = 305

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + C  C    C   CP        ++   I  D C  C +C  ECP  A+  + E  
Sbjct: 241 VADKCNGC--WLCFVYCPDGVISMNTDDRPVIDYDHCKGCQICVHECPTHALVAEREQE 297


>gi|300938216|ref|ZP_07152984.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           21-1]
 gi|300456806|gb|EFK20299.1| cytochrome c nitrite reductase, Fe-S protein [Escherichia coli MS
           21-1]
          Length = 223

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDRAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|260776502|ref|ZP_05885397.1| NrfC protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607725|gb|EEX33990.1| NrfC protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 229

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +  D+C+ CG C   CP  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVDKDKCVGCGYCLAACPYQ 145


>gi|255629169|gb|ACU14929.1| unknown [Glycine max]
          Length = 222

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CP DAI
Sbjct: 121 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPGDAI 177



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 121 ERCIACKLCEAICPAQAITIEAEERED 147



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CP D   EG NF
Sbjct: 162 CIYCGF--CQEACPGDAIVEGPNF 183


>gi|288869815|ref|ZP_05976441.2| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|288860364|gb|EFC92662.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 343

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD 53
           CI CK   C++ CPV   + E +  + ++P +CI CG C   CPV+
Sbjct: 128 CIRCK--KCMKQCPVGAIHVEDDGKVVVNPFKCISCGECLDVCPVN 171



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 18/69 (26%)

Query: 8   NCILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCEPECP 51
            CI C    C EVCP +                     +    I    CI C  C  +CP
Sbjct: 82  ACIRCGF--CAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCP 139

Query: 52  VDAIKPDTE 60
           V AI  + +
Sbjct: 140 VGAIHVEDD 148



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 4  VVTENCILCKHTDCVEVCP-----------VDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          V+ E CI C    C+  CP            D   EG  +  I+   CI CG C   CP 
Sbjct: 38 VIKEYCIGCG--ACISSCPSPNAIKLVRDEDDETKEGVTYPIINKSACIRCGFCAEVCPT 95

Query: 53 D 53
          +
Sbjct: 96 E 96



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +E C  C    C+  CP       E  + +  + ++C+ C +C   CP   IK 
Sbjct: 259 SETCKKC--QMCIPDCPTKAISFDEKNDTIVRNENKCLRCSICYQSCPFSTIKY 310


>gi|229587157|ref|YP_002845658.1| NADH dehydrogenase subunit I [Rickettsia africae ESF-5]
 gi|259514784|sp|C3PLS5|NUOI_RICAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|228022207|gb|ACP53915.1| NADH dehydrogenase I chain I [Rickettsia africae ESF-5]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 34.7 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|157829061|ref|YP_001495303.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933787|ref|YP_001650576.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. Iowa]
 gi|226737414|sp|B0BVB0|NUOI_RICRO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737415|sp|A8GTS0|NUOI_RICRS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157801542|gb|ABV76795.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908874|gb|ABY73170.1| NADH-quinone oxidoreductase chain I [Rickettsia rickettsii str.
           Iowa]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|91204918|ref|YP_537273.1| NADH dehydrogenase subunit I [Rickettsia bellii RML369-C]
 gi|157827755|ref|YP_001496819.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389]
 gi|110287771|sp|Q1RKD0|NUOI_RICBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737412|sp|A8GY32|NUOI_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91068462|gb|ABE04184.1| NADH dehydrogenase I chain I [Rickettsia bellii RML369-C]
 gi|157803059|gb|ABV79782.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 34.7 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|15893152|ref|NP_360866.1| NADH dehydrogenase subunit I [Rickettsia conorii str. Malish 7]
 gi|20139030|sp|Q92G94|NUOI_RICCN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|15620362|gb|AAL03767.1| NADH dehydrogenase I chain I [Rickettsia conorii str. Malish 7]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|89893739|ref|YP_517226.1| hypothetical protein DSY0993 [Desulfitobacterium hafniense Y51]
 gi|219668114|ref|YP_002458549.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
 gi|89333187|dbj|BAE82782.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538374|gb|ACL20113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 240

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCE--PECPVDAIKPDT 59
          CI C    C   CP+   Y+    ++I  DEC++CG+C    +CP  A   D 
Sbjct: 8  CIGCGL--CAPYCPMGVLYKDGETMSIDHDECVECGICLNCAKCPKGAFYQDE 58



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I  ++CI CG+C P CP+  +  D E
Sbjct: 3  IDVNKCIGCGLCAPYCPMGVLYKDGE 28


>gi|320105159|ref|YP_004180750.1| NADH dehydrogenase subunit I [Isosphaera pallida ATCC 43644]
 gi|319752441|gb|ADV64201.1| NADH dehydrogenase subunit I [Isosphaera pallida ATCC 43644]
          Length = 201

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 16/62 (25%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C   CPV C                +      I    CI CG+CE  CPVDA
Sbjct: 78  CVAC--MLCATACPVHCIDIVPATAPPSWPDREKYPESFVIDELRCIYCGMCEEACPVDA 135

Query: 55  IK 56
           I+
Sbjct: 136 IE 137


>gi|297617703|ref|YP_003702862.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
 gi|297145540|gb|ADI02297.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
          Length = 401

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          VT +C  C H  C  VCP             I   +C++CG C   CP  AI+ 
Sbjct: 26 VTSDCHGCDH--CTSVCPSHAIKGRIGEQHHIDTRKCLNCGQCLISCPFGAIED 77


>gi|254284151|ref|ZP_04959119.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
 gi|219680354|gb|EED36703.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
          Length = 200

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKLMHTVIVDECTGCDLCVEPCPVDCI 166


>gi|212636218|ref|YP_002312743.1| anaerobic dimethyl sulfoxide reductase subunit B [Shewanella
           piezotolerans WP3]
 gi|212557702|gb|ACJ30156.1| Anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           piezotolerans WP3]
          Length = 226

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  D CI C  C   CP DA + D 
Sbjct: 79  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAEDICIGCESCSRACPYDAPQIDR 138

Query: 60  E 60
           E
Sbjct: 139 E 139


>gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
 gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
          Length = 661

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C  + C   CPV     E      I   +CI CG C   C   A+  +
Sbjct: 610 EACKGC--SKCARNCPVGAITGEIRKPFVIDTAKCIKCGACIDNCAFHAVYTE 660



 Score = 41.3 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I P+ C  C  C   CPV AI  +     
Sbjct: 607 IDPEACKGCSKCARNCPVGAITGEIRKPF 635


>gi|158520457|ref|YP_001528327.1| thiamine pyrophosphate binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509283|gb|ABW66250.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Desulfococcus oleovorans Hxd3]
          Length = 620

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 3   YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V++ C    H DC+    CP   FY  +  + I+P+ C  C VC   CP  AI P
Sbjct: 562 FYVSDRCKN--HRDCINTLACP--AFYVADGRVQINPNLCAGCAVCVQVCPEKAIVP 614


>gi|18312131|ref|NP_558798.1| ferredoxin like protein [Pyrobaculum aerophilum str. IM2]
 gi|18159564|gb|AAL62980.1| ferredoxin like protein [Pyrobaculum aerophilum str. IM2]
          Length = 96

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP  +I+ +  
Sbjct: 32 EKCRKCEKKPCTYMCPAKCYVQQGDYVVLSTEACVECGTCRVVCPHGSIEWNYP 85


>gi|107099346|ref|ZP_01363264.1| hypothetical protein PaerPA_01000358 [Pseudomonas aeruginosa
          PACS2]
 gi|254243460|ref|ZP_04936782.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa 2192]
 gi|126196838|gb|EAZ60901.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa 2192]
          Length = 83

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDT 59
          I  D 
Sbjct: 59 IPLDD 63


>gi|325294634|ref|YP_004281148.1| iron sulfur cluster binding protein (4Fe-4S ferredoxin family
          protein) [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325065082|gb|ADY73089.1| iron sulfur cluster binding protein (4Fe-4S ferredoxin family
          protein) [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 64

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
          +Y+    CI CK   C+EVCP+  F   GE  + ++P++C  C +C   CPVDAI
Sbjct: 5  SYIDQGLCIGCK--ICIEVCPMGVFVMSGEKAVVMNPEKCNGCEICVENCPVDAI 57


>gi|315618863|gb|EFU99446.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
           3431]
 gi|323940662|gb|EGB36853.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
          Length = 211

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 79  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 138

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I     + P  A + G +   E
Sbjct: 139 KCDFCAESRLAKGFPPICV--SACPEHALIFGREDSPE 174


>gi|301310562|ref|ZP_07216501.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300832136|gb|EFK62767.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 301

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV+VCP       E  +  +   C  CG C   CP  A++
Sbjct: 52 CIGCG--ACVDVCPTGALTLTEAGIVTNRSLCRTCGRCAEVCPTLAME 97



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C               L     +CI CG C   CP  A
Sbjct: 26 CPLACVWCHNPEGISPRAEKLYTRK-KCIGCGACVDVCPTGA 66


>gi|254880766|ref|ZP_05253476.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          4_3_47FAA]
 gi|319639776|ref|ZP_07994506.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          3_1_40A]
 gi|254833559|gb|EET13868.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          4_3_47FAA]
 gi|317388593|gb|EFV69442.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          3_1_40A]
          Length = 302

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    C++ CP          +     +C+ CG C  ECP  AI+
Sbjct: 53 CLGCG--TCLKACPNGALTLAPEGIITDKQKCVLCGRCAEECPAMAIE 98



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 21 CPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C           G++ L     +C+ CG C   CP  A
Sbjct: 27 CPLSCIWCHNPEGIRNGKDKLY-TAKKCLGCGTCLKACPNGA 67


>gi|225706152|gb|ACO08922.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Osmerus mordax]
          Length = 210

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + EP
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEP 132



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|167036163|ref|YP_001671394.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida GB-1]
 gi|170719528|ref|YP_001747216.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas putida W619]
 gi|325273725|ref|ZP_08139925.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas sp. TJI-51]
 gi|166862651|gb|ABZ01059.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
          putida GB-1]
 gi|169757531|gb|ACA70847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pseudomonas
          putida W619]
 gi|324101145|gb|EGB98791.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pseudomonas sp. TJI-51]
          Length = 83

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D     
Sbjct: 59 IPLDEAHPE 67


>gi|323701335|ref|ZP_08113009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533594|gb|EGB23459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 257

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C +  CV+ CPV           + + P+ C  CG C   CP  +I    
Sbjct: 162 CRQCGNARCVQACPVGALERHPETHAVQLKPEICQGCGACAEACPFGSIHFKD 214


>gi|298246474|ref|ZP_06970280.1| cyclic nucleotide-binding protein [Ktedonobacter racemifer DSM
           44963]
 gi|297553955|gb|EFH87820.1| cyclic nucleotide-binding protein [Ktedonobacter racemifer DSM
           44963]
          Length = 642

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +   C  C+   C+ +C         +      + CI CG+C   CP D I        +
Sbjct: 494 IATACRQCQDPVCM-LCSRAGIARLPSGEVYITESCIGCGICAERCPYDNISIVDLEEQQ 552

Query: 65  ------LWLKINSEYATQ----WPNITTKKESLPSAAKMDGVKQ 98
                 LW   ++ ++++     P +TT    L +   +D V++
Sbjct: 553 TQRQGDLWQSFSTFFSSKKRKLLPVLTTP-GPLDNTPPLDPVEE 595



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 16/61 (26%)

Query: 7  ENCILCKHTDCVEVCPV---DCFYEGE-NFLAIHP----------DECIDCGVCEPECPV 52
          + CI C    C+  CPV         E N   I            DEC+ CG C P CPV
Sbjct: 37 DMCIGCD--RCMRACPVPLSSKISIAELNKATIDDELSPLLVRFTDECVLCGSCVPVCPV 94

Query: 53 D 53
          D
Sbjct: 95 D 95



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 23  VDCFYEGENFLAIHPDECIDCGVCEPEC 50
            D   EG   L I   +CI C  CE  C
Sbjct: 446 DDGVIEGTEVLVIDLAKCIHCNECEEAC 473


>gi|291287814|ref|YP_003504630.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884974|gb|ADD68674.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 267

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C + CPV           I P  CI CG CE  CP  AI+
Sbjct: 213 CIGC--RMCEKKCPVGAIDVDSFLAVIDPAPCIACGECERVCPTGAIR 258



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK--PDTE 60
           V T  C+      CV+ C  D  Y G + +  I PD+C  CG C   CP   IK  P+ +
Sbjct: 133 VCTYACVGEG--SCVKSCAFDAMYMGSDGIPVIIPDKCTSCGKCVAACPRKLIKLIPEDK 190

Query: 61  P 61
           P
Sbjct: 191 P 191



 Score = 36.3 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 18/72 (25%)

Query: 4   VVTENCILCKHTDCVEVCP--------------VDCFYE--GENFLAIHPDECIDCGVCE 47
           ++ + C  C    CV  CP              V C  +  G +        CI C +CE
Sbjct: 163 IIPDKCTSCG--KCVAACPRKLIKLIPEDKPFVVACMSKDKGPDVKKACKVGCIGCRMCE 220

Query: 48  PECPVDAIKPDT 59
            +CPV AI  D+
Sbjct: 221 KKCPVGAIDVDS 232


>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
          Length = 623

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++  E C  C    C + CP             I+ D CI CG C+  C  DA+  +
Sbjct: 568 HINPEFCKGCG--KCAKNCPTGAITGARKHPYTINNDLCIKCGNCKDNCAFDAVYVE 622



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I+P+ C  CG C   CP  AI
Sbjct: 565 RQFHINPEFCKGCGKCAKNCPTGAI 589


>gi|254422749|ref|ZP_05036467.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190238|gb|EDX85202.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 134

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          MTY +T+ CI C    C+  CP +          I+ D C +C        C   CP +
Sbjct: 1  MTYAITDKCISC--QRCIPTCPTNAIERNGATFKINADLCNNCKGFYSVPQCWAVCPTE 57



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
                D+CI C  C P CP +AI+
Sbjct: 1  MTYAITDKCISCQRCIPTCPTNAIE 25


>gi|170755508|ref|YP_001782909.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum B1 str. Okra]
 gi|169120720|gb|ACA44556.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum B1 str. Okra]
 gi|322807596|emb|CBZ05171.1| electron transfer flavoprotein, alpha subunit [Clostridium
          botulinum H04402 065]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|168232096|ref|ZP_02657154.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|194472499|ref|ZP_03078483.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|194458863|gb|EDX47702.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|205333575|gb|EDZ20339.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
          Length = 287

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT  C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTRACVRRRFRFSSCRACADVCPAQAFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEP 61
           + C +C    C   CP +     +N L I    C  CG C   CP  A  ++ D EP
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDNTLTIVAARCTGCGGCAAVCPHQALRLRFDVEP 245


>gi|134298016|ref|YP_001111512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134050716|gb|ABO48687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 1010

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV    C+ C    CVEVCP           G     I+P  C  CG C   C   AI
Sbjct: 934 AYVDKRKCMACGV--CVEVCPAKAATLVTDERGNTVADINPALCKGCGACSSSCRCGAI 990



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 29/90 (32%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECID-- 42
           Y+    C  C    C E CPV   D F +G                N  AI   +C+   
Sbjct: 104 YIDVNKCTGCG--SCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAYAIDSSKCLKFK 161

Query: 43  -------CGVCEPECPVDAIKPDTEPGLEL 65
                  CG C   C   AI    +     
Sbjct: 162 NLSNDKLCGKCIKACQAGAINHHMQDEETQ 191



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
            I  ++C  CG C   CPV  +      GL     I   YA  +PN
Sbjct: 104 YIDVNKCTGCGSCAEACPVK-VDDAFNQGLNKRKAIYKLYAQAFPN 148



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 15/45 (33%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
                    +   +C+ CGVC   CP  A    T+        IN
Sbjct: 927 IETDGKAAYVDKRKCMACGVCVEVCPAKAATLVTDERGNTVADIN 971


>gi|323499047|ref|ZP_08104027.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326]
 gi|323315882|gb|EGA68913.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326]
          Length = 553

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  D CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCDRCVDACPAGALSSEGNDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KPDTEPGLE 64
                   E
Sbjct: 233 HYALPNPQE 241



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+C   CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGASPSLQFIEQDCIQCGLCTKACP 462



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCDRCVDACPAGALSSEGNDKTGHRIEIN 213


>gi|313672151|ref|YP_004050262.1| molybdopterin oxidoreductase 4fe-4S ferredoxin [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938907|gb|ADR18099.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 185

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C++  C  VCP    Y+    +  +  D+CI C  C   CP DA  P
Sbjct: 63  CQHCENAPCQSVCPTQATYKTPEGVVLVDYDKCILCKACMTACPYDARFP 112


>gi|297617602|ref|YP_003702761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145439|gb|ADI02196.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 287

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C    C+EVCP   + + E       P  CI C  C   CP +  K      
Sbjct: 74  CMHCDEPACMEVCPRQAYSKNEWGATVHDPSRCIGCQYCHYACPWNVPKYLKRED 128


>gi|291614821|ref|YP_003524978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sideroxydans lithotrophicus ES-1]
 gi|291584933|gb|ADE12591.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sideroxydans lithotrophicus ES-1]
          Length = 84

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP     +G+    I P++C +C        C   CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPECPNGAISQGDTIYIIDPNKCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P     +E   ++ ++Y
Sbjct: 59 I-PHDPAHVETKEQLQAKY 76


>gi|170760160|ref|YP_001788602.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A3 str. Loch Maree]
 gi|169407149|gb|ACA55560.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A3 str. Loch Maree]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|153813652|ref|ZP_01966320.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174]
 gi|149830268|gb|EDM85361.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174]
          Length = 290

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C + C  +     ++ L I  ++C  CG C   CPVDA
Sbjct: 167 DTCIHCGV--CEKACREEAISFQDDKLIIDNEKCNYCGRCAKSCPVDA 212



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C++    D   +G   ++   D CI CGVCE  C  +AI    +
Sbjct: 145 NCLKAEENDVGIKGAAQISWKEDTCIHCGVCEKACREEAISFQDD 189


>gi|126666311|ref|ZP_01737290.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17]
 gi|126629112|gb|EAZ99730.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17]
          Length = 179

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 57  ERCVACNL--CAVACPVACISLEKGEREDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQ 114

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 115 LTPDFEMGEY 124


>gi|170724604|ref|YP_001758630.1| dimethylsulfoxide reductase subunit B [Shewanella woodyi ATCC
           51908]
 gi|169809951|gb|ACA84535.1| dimethylsulfoxide reductase, chain B [Shewanella woodyi ATCC 51908]
          Length = 225

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    ++   +  + +  D CI C  C   CP DA + D+
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRRQDGLVHVAQDLCIGCESCARACPYDAPQIDS 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|116695848|ref|YP_841424.1| benzoyl-CoA dioxygenase A [Ralstonia eutropha H16]
 gi|113530347|emb|CAJ96694.1| Benzoyl-CoA dioxygenase A [Ralstonia eutropha H16]
          Length = 426

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV           +  D+C  C  C   CP  +I
Sbjct: 17 EICIRCN--TCEATCPVGAITHDSRNYVVDADKCNLCMACISPCPTGSI 63



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  D+ 
Sbjct: 14 IDPEICIRCNTCEATCPVGAITHDSR 39


>gi|110680455|ref|YP_683462.1| NADH dehydrogenase subunit I [Roseobacter denitrificans OCh 114]
 gi|115502543|sp|Q163R7|NUOI_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|109456571|gb|ABG32776.1| NADH-quinone oxidoreductase chain I [Roseobacter denitrificans OCh
           114]
          Length = 164

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVDAI 
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIV 120

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   A
Sbjct: 121 EGPNFEFSTETREELYYDKDRLLA 144


>gi|115523735|ref|YP_780646.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53]
 gi|123321218|sp|Q07QW8|NUOI1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|115517682|gb|ABJ05666.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisA53]
          Length = 173

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C                   I+   CI CG CE  CP  AI+
Sbjct: 51  ERCVACNL--CAVACPVGCIDLAKAVAEDGRWYPEHFRINFARCIFCGYCEEACPTAAIQ 108

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 109 LTPDFELSEW 118


>gi|289548469|ref|YP_003473457.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182086|gb|ADC89330.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 183

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
           NC  C+   CV  CP     + ++ +    +  CI C  C   CP  AI
Sbjct: 59  NCFHCEVAPCVLACPTSAMRKRQDGIVYLEETRCIGCKACIIACPYGAI 107


>gi|257095540|ref|YP_003169181.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Candidatus Accumulibacter phosphatis clade IIA str.
          UW-1]
 gi|257048064|gb|ACV37252.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 86

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP +  ++G     I P +C +C        C   CPVD 
Sbjct: 1  MSLIITDECINCDV--CEPECPNEAIFQGAEIYEIDPSKCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPD---TEPGLELWLK 68
          I  D    E   +LW+K
Sbjct: 59 IPKDPAHEESEDQLWVK 75


>gi|189485593|ref|YP_001956534.1| hypothetical protein TGRD_590 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287552|dbj|BAG14073.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 378

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    C   CP +      N    I  ++CI C  C   CP  A+K       ++++
Sbjct: 318 CVKC--MLCARACPAEAIRAAGNQYPHIDAEKCISCFCCHEMCPHKAVKFKKSMLAKIFI 375

Query: 68  KIN 70
           K N
Sbjct: 376 KEN 378



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           I+   C+ C +C   CP +AI+         +  I++E
Sbjct: 313 INEKICVKCMLCARACPAEAIR----AAGNQYPHIDAE 346


>gi|163794803|ref|ZP_02188773.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180076|gb|EDP64601.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 676

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLELW 66
                T C+++CP        + +++ P  C  CG+C   CP  AI    PD +   +  
Sbjct: 282 RKTGCTRCLDLCPASAIAPAGDVVSVDPALCGGCGLCAGTCPTSAITYAYPDVQSVHQRI 341

Query: 67  LKINSEY 73
           + + S Y
Sbjct: 342 MALASAY 348



 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           V TE C LC    CV  CP     +  +   L    D C+ CG+C   CP   I  +
Sbjct: 517 VDTEGCTLCL--ACVSACPASALQDNPDKPQLLFQEDACVQCGLCAATCPEKVITLE 571



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           + +  + C  C  C   CP  A++ + +    L+ +
Sbjct: 515 VVVDTEGCTLCLACVSACPASALQDNPDKPQLLFQE 550


>gi|311247108|ref|XP_003122483.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Sus scrofa]
 gi|311247128|ref|XP_003122489.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Sus scrofa]
          Length = 212

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 111 ERCIACKLCEAVCPAQAITIEAEPRAD 137



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 152 CIYCGF--CQEACPVDAIVEGPNF 173


>gi|299531030|ref|ZP_07044443.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni S44]
 gi|298720987|gb|EFI61931.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni S44]
          Length = 220

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           CI C  T C++ CP D          ++  + C  C +C P CPVD I+         G 
Sbjct: 90  CIGC--TLCIKACPTDAILGANKRMHSVIAEHCTGCELCIPVCPVDCIELVNASAEATGW 147

Query: 64  ELWLKINSEYATQ 76
             W    +E+A  
Sbjct: 148 SAWSAAQAEHARH 160



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 22/83 (26%), Gaps = 36/83 (43%)

Query: 9   CILCKHTDC-------------VEVCPVDC----------------------FYEGENFL 33
           C  C + DC             +  CP                           E    L
Sbjct: 23  CTRCGYPDCASYAKAIASGEAAINQCPPGGQEGVRRLASITDRPELPLNAANGIETPRTL 82

Query: 34  A-IHPDECIDCGVCEPECPVDAI 55
           A I    CI C +C   CP DAI
Sbjct: 83  ALIDEAWCIGCTLCIKACPTDAI 105


>gi|67459652|ref|YP_247276.1| NADH dehydrogenase subunit I [Rickettsia felis URRWXCal2]
 gi|75535952|sp|Q4UK24|NUOI_RICFE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|67005185|gb|AAY62111.1| NADH dehydrogenase I chain I [Rickettsia felis URRWXCal2]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERDD 84



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|22125532|ref|NP_668955.1| NADH dehydrogenase subunit I [Yersinia pestis KIM 10]
 gi|45442148|ref|NP_993687.1| NADH dehydrogenase subunit I [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596899|ref|YP_071090.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 32953]
 gi|108808035|ref|YP_651951.1| NADH dehydrogenase subunit I [Yersinia pestis Antiqua]
 gi|108812305|ref|YP_648072.1| NADH dehydrogenase subunit I [Yersinia pestis Nepal516]
 gi|145599238|ref|YP_001163314.1| NADH dehydrogenase subunit I [Yersinia pestis Pestoides F]
 gi|149365546|ref|ZP_01887581.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125]
 gi|153950602|ref|YP_001400439.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 31758]
 gi|162421132|ref|YP_001606298.1| NADH dehydrogenase subunit I [Yersinia pestis Angola]
 gi|165925636|ref|ZP_02221468.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937677|ref|ZP_02226239.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008508|ref|ZP_02229406.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213832|ref|ZP_02239867.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399268|ref|ZP_02304792.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422344|ref|ZP_02314097.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424548|ref|ZP_02316301.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470944|ref|ZP_02335648.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis FV-1]
 gi|170023808|ref|YP_001720313.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis YPIII]
 gi|186895980|ref|YP_001873092.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis PB1/+]
 gi|218929634|ref|YP_002347509.1| NADH dehydrogenase subunit I [Yersinia pestis CO92]
 gi|229838090|ref|ZP_04458249.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895289|ref|ZP_04510463.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides
           A]
 gi|229898650|ref|ZP_04513795.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902649|ref|ZP_04517766.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516]
 gi|270490170|ref|ZP_06207244.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27]
 gi|294504362|ref|YP_003568424.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003]
 gi|81639048|sp|Q669A7|NUOI_YERPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123072748|sp|Q1C6B6|NUOI_YERPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123073347|sp|Q1CHQ8|NUOI_YERPN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123777027|sp|Q7CJ89|NUOI_YERPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633544|sp|A4TM29|NUOI_YERPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772597|sp|A7FGR1|NUOI_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772598|sp|B2K814|NUOI_YERPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772599|sp|A9R6L4|NUOI_YERPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772600|sp|B1JGM0|NUOI_YERPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21958432|gb|AAM85206.1|AE013767_3 NADH dehydrogenase I chain I [Yersinia pestis KIM 10]
 gi|45437012|gb|AAS62564.1| NADH Dehydrogenase I chain I [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590181|emb|CAH21818.1| NADH dehydrogenase I chain I [Yersinia pseudotuberculosis IP 32953]
 gi|108775953|gb|ABG18472.1| NADH Dehydrogenase I chain I [Yersinia pestis Nepal516]
 gi|108779948|gb|ABG14006.1| NADH Dehydrogenase I chain I [Yersinia pestis Antiqua]
 gi|115348245|emb|CAL21173.1| NADH Dehydrogenase I chain I [Yersinia pestis CO92]
 gi|145210934|gb|ABP40341.1| NADH Dehydrogenase I chain I [Yersinia pestis Pestoides F]
 gi|149291959|gb|EDM42033.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125]
 gi|152962097|gb|ABS49558.1| NADH-quinone oxidoreductase, I subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|162353947|gb|ABX87895.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis Angola]
 gi|165914427|gb|EDR33042.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922745|gb|EDR39896.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992890|gb|EDR45191.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205006|gb|EDR49486.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958850|gb|EDR55871.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051772|gb|EDR63180.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056430|gb|EDR66199.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750342|gb|ACA67860.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis
           YPIII]
 gi|186699006|gb|ACC89635.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680096|gb|EEO76195.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516]
 gi|229688198|gb|EEO80269.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694456|gb|EEO84503.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701775|gb|EEO89800.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides
           A]
 gi|262362649|gb|ACY59370.1| NADH dehydrogenase subunit I [Yersinia pestis D106004]
 gi|262366278|gb|ACY62835.1| NADH dehydrogenase subunit I [Yersinia pestis D182038]
 gi|270338674|gb|EFA49451.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27]
 gi|294354821|gb|ADE65162.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003]
 gi|320014614|gb|ADV98185.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|284161205|ref|YP_003399828.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284011202|gb|ADB57155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 134

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKP 57
           C  C+   CV+VCP     + +    I+  D CI C  C   C + AI  
Sbjct: 54  CRGCEDPPCVQVCPTGALRKRKGGGVIYKEDLCIGCKNCVQACTIGAIFE 103



 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           + CI CK  +CV+ C +   +E  +        C+ CG C   CP
Sbjct: 84  DLCIGCK--NCVQACTIGAIFERRDGKI---AVCVHCGYCVNFCP 123


>gi|148381229|ref|YP_001255770.1| electron transfer flavoprotein alpha-subunit [Clostridium
          botulinum A str. ATCC 3502]
 gi|153933291|ref|YP_001385604.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. ATCC 19397]
 gi|153936895|ref|YP_001389010.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. Hall]
 gi|148290713|emb|CAL84844.1| electron transfer flavoprotein alpha-subunit [Clostridium
          botulinum A str. ATCC 3502]
 gi|152929335|gb|ABS34835.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. ATCC 19397]
 gi|152932809|gb|ABS38308.1| electron transfer flavoprotein, alpha subunit/FixB family protein
          [Clostridium botulinum A str. Hall]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVVNGLAEVN-EKCTICGACVEACPFDAI 53


>gi|94969971|ref|YP_592019.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552021|gb|ABF41945.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 255

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C+   C   CPV    +          D+CI C  C   CP    + +
Sbjct: 58  CMHCQDPTCASACPVGALQKNSFGPVTYDADKCIGCRYCMVACPYSVPRYE 108


>gi|238788647|ref|ZP_04632439.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC
           33641]
 gi|238723242|gb|EEQ14890.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC
           33641]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|295109804|emb|CBL23757.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus obeum A2-162]
          Length = 287

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C + C  +     +  L I   +C  CG C   CPVDA
Sbjct: 164 DTCIHCGV--CEKACREEAITFRDGKLVIDTQKCNYCGRCAKSCPVDA 209



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C++    D   +G   ++   D CI CGVCE  C  +AI
Sbjct: 142 NCLKAEENDVGIKGAAQISWKEDTCIHCGVCEKACREEAI 181


>gi|260462240|ref|ZP_05810484.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum
           WSM2075]
 gi|259032100|gb|EEW33367.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum
           WSM2075]
          Length = 163

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118

Query: 56  ------KPDTEPGLELWLKINSEYA 74
                 +  TE   EL+   +   A
Sbjct: 119 VEGPNFEFATETREELYYDKDRLLA 143


>gi|239946812|ref|ZP_04698565.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921088|gb|EER21112.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERDD 84



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|187776798|ref|ZP_02993271.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC
          15579]
 gi|187775457|gb|EDU39259.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC
          15579]
          Length = 398

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++ E C  C    C + CP D  +       ++ ++C  CG C   CP DAI
Sbjct: 5  IIKEKCKACG--ICEKQCPFDAIHVINGLAEVN-EKCTICGACVEACPFDAI 53


>gi|162148803|ref|YP_001603264.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545449|ref|YP_002277678.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787380|emb|CAP56975.1| NADH-quinone oxidoreductase chain I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533126|gb|ACI53063.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 162

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP +                    I   +CI CG+CE  CPVDAI
Sbjct: 61  ERCIACKL--CEATCPAEAITIESEPRDDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP +AI  ++EP  +
Sbjct: 61 ERCIACKLCEATCPAEAITIESEPRDD 87


>gi|157962175|ref|YP_001502209.1| electron transport complex protein RnfB [Shewanella pealeana ATCC
           700345]
 gi|189043389|sp|A8H537|RNFB_SHEPA RecName: Full=Electron transport complex protein rnfB
 gi|157847175|gb|ABV87674.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|218767189|ref|YP_002341701.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051197|emb|CAM07468.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|319411394|emb|CBY91805.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325129159|gb|EGC52007.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
          N1568]
          Length = 83

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTE 60
          I  D E
Sbjct: 59 ILIDEE 64


>gi|332702093|ref|ZP_08422181.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552242|gb|EGJ49286.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 370

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +NC  C    CVEVC        E+  +++  D C  CG C   C    ++ D    +  
Sbjct: 194 DNCKGCG--ICVEVCAPGALRMDEDKRISVDKDLCAGCGACFHACAHHGVEIDWNTDINE 251

Query: 66  WLKINSEYATQWPNITTKKESL 87
           +L    EYA     +T  K +L
Sbjct: 252 FLGRMMEYAAAT-LLTRAKPTL 272



 Score = 37.4 bits (86), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           +HPD C  CG+C   C   A++ D +
Sbjct: 191 VHPDNCKGCGICVEVCAPGALRMDED 216


>gi|325528986|gb|EGD06007.1| ferredoxin [Burkholderia sp. TJI49]
          Length = 167

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C P CPVD I     
Sbjct: 80  AFIDESLCIGC--TLCMQACPVDAIVGAPKQMHTIVESLCTGCDLCVPPCPVDCIAMVPV 137

Query: 58  -DTEPGLELWLKINSEYATQ 76
                G + W +  ++ A +
Sbjct: 138 TGERTGWDAWTQEQADAARE 157


>gi|312880839|ref|ZP_07740639.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
          paucivorans DSM 12260]
 gi|310784130|gb|EFQ24528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
          paucivorans DSM 12260]
          Length = 57

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  + C+ C+   CV VCP       +    ++ D C++CG C   CPV AI
Sbjct: 4  AVVDKDTCVGCE--ACVGVCPTSAISMEDGKAQVNADTCVECGACVATCPVSAI 55



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +  D C+ C  C   CP  AI  +     
Sbjct: 5  VVDKDTCVGCEACVGVCPTSAISMEDGKAQ 34


>gi|303246395|ref|ZP_07332674.1| nitroreductase [Desulfovibrio fructosovorans JJ]
 gi|302492105|gb|EFL51980.1| nitroreductase [Desulfovibrio fructosovorans JJ]
          Length = 301

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C  VCP           ++  + CI CG C   CP +A+
Sbjct: 10 AEACLGCG--ACAAVCPSGVLGFDGRKASVVAEGCIGCGHCAALCPAEAV 57



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I  + C+ CG C   CP   +  D
Sbjct: 8  IDAEACLGCGACAAVCPSGVLGFD 31


>gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
           SB 1003]
 gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 305

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
              CI C    C+ VCPV               +CI CG C   CP +A+K
Sbjct: 58  ASACIGCG--KCIPVCPVGALSRDNPGFV-DRAKCIRCGDCTKVCPTEALK 105



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 21 CPVDC-FYEGENFLAIHPD------ECIDCGVCEPECPVDAIKPDTE 60
          CP+ C +       +  PD       CI CG C P CPV A+  D  
Sbjct: 35 CPLACRWCSNPESQSTEPDLFFRASACIGCGKCIPVCPVGALSRDNP 81


>gi|213579914|ref|ZP_03361740.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 259

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDD 213


>gi|126699794|ref|YP_001088691.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           630]
 gi|115251231|emb|CAJ69062.1| putative oxidoreductase, Fe-S subunit [Clostridium difficile]
          Length = 140

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI C    C+ VCP +CF + E F+ +    CI C +CE  C   A
Sbjct: 54  ACIHCNEPKCLGVCPKNCFKKEEGFIVLDNQNCIGCKLCEKACEYGA 100


>gi|94499818|ref|ZP_01306354.1| Ferredoxin [Oceanobacter sp. RED65]
 gi|94428019|gb|EAT12993.1| Ferredoxin [Oceanobacter sp. RED65]
          Length = 81

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +   EGE    I P++C +C        C+  CPVD 
Sbjct: 1  MALMITDDCINCDV--CEPECPNEAISEGEEIYEIDPNKCTECVGHYDEPQCQLVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D E     
Sbjct: 59 IPLDPENEETH 69


>gi|326388440|ref|ZP_08210036.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207172|gb|EGD57993.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 470

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C    C+  CP  D           I P  CI  G C   CP DAI
Sbjct: 89  CIGCG--ACIRACPETDALGLIGRTAVLIEPWACIGHGTCRDACPTDAI 135



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 35  IHPDECIDCGVCEPECP 51
           I P  CI CG C   CP
Sbjct: 84  IDPARCIGCGACIRACP 100


>gi|325267328|ref|ZP_08133990.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC
           33394]
 gi|324981265|gb|EGC16915.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC
           33394]
          Length = 195

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 94  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 150



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  ++E   +
Sbjct: 94  ERCIACKLCEAVCPAMAINIESEERED 120


>gi|307546575|ref|YP_003899054.1| ferredoxin [Halomonas elongata DSM 2581]
 gi|307218599|emb|CBV43869.1| ferredoxin [Halomonas elongata DSM 2581]
          Length = 82

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISPGEEIYIIDPNRCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P      E   ++  +Y
Sbjct: 59 I-PLDPERQESRDELMEKY 76


>gi|302387715|ref|YP_003823537.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1]
 gi|302198343|gb|ADL05914.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1]
          Length = 470

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C+ C   +C++ CP            I+   CIDCG C   CP  A
Sbjct: 13 ELCMGC--INCIKRCPTQAIRVRNGKAQINSKFCIDCGECIRVCPHHA 58


>gi|291614848|ref|YP_003525005.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291584960|gb|ADE12618.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 184

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I   EC  C +C   CPVD I
Sbjct: 105 AFIDEQTCIGC--TLCLQACPVDAIVGAAKQMHTIIASECTGCELCIAPCPVDCI 157



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
           G+    I    CI C +C   CPVDAI
Sbjct: 101 GKAVAFIDEQTCIGCTLCLQACPVDAI 127


>gi|238650815|ref|YP_002916670.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic]
 gi|259514787|sp|C4K221|NUOI_RICPU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|238624913|gb|ACR47619.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIEADERED 84



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|207727832|ref|YP_002256226.1| ferredoxin protein [Ralstonia solanacearum MolK2]
 gi|206591073|emb|CAQ56685.1| ferredoxin protein [Ralstonia solanacearum MolK2]
          Length = 82

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|153941079|ref|YP_001391521.1| iron-sulfur binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152936975|gb|ABS42473.1| iron-sulfur binding protein [Clostridium botulinum F str.
           Langeland]
          Length = 288

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C  T+C  VC  D        L I P  C  CG C   CP +AIK + E   + +
Sbjct: 65  DICIKC--TECELVCKFDAIKN----LKIDPFLCEWCGACTLICPQNAIKLEDEKTAKTF 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G    +I  D CI C  CE  C  DAIK
Sbjct: 56 GGKKASIDEDICIKCTECELVCKFDAIK 83


>gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
 gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
          Length = 1178

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  E C  C    C  +CPVD F +G  +    + PD CI C VC   CP DA++P
Sbjct: 250 VDPERCDGCGV--CERLCPVD-FLDGLGQPRAGLEPDACIRCQVCVEACPTDAMRP 302


>gi|295094633|emb|CBK83724.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Coprococcus sp. ART55/1]
          Length = 286

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +CI+C    CV+ C        +  + +  D+C  CG C   CP DA
Sbjct: 164 SCIMCGV--CVKACREGAITMADGKIILDTDKCNYCGRCAKACPTDA 208


>gi|291514556|emb|CBK63766.1| hypothetical protein AL1_12970 [Alistipes shahii WAL 8301]
          Length = 281

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + C  C    C  +CP      G+      P  CI C  C   CPV A
Sbjct: 211 ADRCTHCG--RCAAICPTQAIARGDE-AHTDPARCIRCCACVKGCPVGA 256



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 10/26 (38%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEP 61
             D C  CG C   CP  AI    E 
Sbjct: 210 DADRCTHCGRCAAICPTQAIARGDEA 235


>gi|288559375|ref|YP_003422861.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
 gi|288542085|gb|ADC45969.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
          Length = 660

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY---EGENFL---------------AIHPDECIDCG 44
           YV  ++C  C    C EVCP++      EG   +                I  + CIDCG
Sbjct: 246 YVKEDDCTGCGQ--CQEVCPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKNYCIDCG 303

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C  DAI  D EP  
Sbjct: 304 LCETVCGPDAIDRDMEPEE 322



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCF-YEGE---NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           T  C  C+   CVE+CP      EGE      AI+   C  CG C   CP  A+  +   
Sbjct: 586 TTVCGACEV--CVELCPFGAVSIEGEGADKHAAINVALCKGCGTCVGACPSGAMNQNHFK 643

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 644 TEQIMAQIAAAL 655


>gi|239815128|ref|YP_002944038.1| electron transport complex, RnfABCDGE type, subunit beta
           [Variovorax paradoxus S110]
 gi|239801705|gb|ACS18772.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus S110]
          Length = 214

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  V+ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I  +
Sbjct: 76  MA-VIDEAWCIGC--TLCLDACPTDAIVGINKRMHTVIEAHCTGCELCIPVCPVDCISLE 132

Query: 59  TE----PGLELWLKINSEYA 74
            E     G + W +  +E A
Sbjct: 133 VETPGRSGWQAWSQAQAEAA 152



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 26 FYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            EG      I    CI C +C   CP DAI
Sbjct: 69 GTEGPRAMAVIDEAWCIGCTLCLDACPTDAI 99


>gi|134298021|ref|YP_001111517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134050721|gb|ABO48692.1| tungsten-dependent benzoyl-CoA reductase-related protein bamE
           [Desulfotomaculum reducens MI-1]
          Length = 1010

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YV    C+ C    CVEVCP           G     I+P  C  CG C   C   AI
Sbjct: 934 AYVDKRKCMACGV--CVEVCPAKAATLVTDERGNTAADINPALCKGCGACSSSCRCGAI 990



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 29/90 (32%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECID-- 42
           Y+    C  C    C E CPV   D F +G                N  AI   +C+   
Sbjct: 104 YIDVNKCTGCG--SCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAYAIDSSKCLKFK 161

Query: 43  -------CGVCEPECPVDAIKPDTEPGLEL 65
                  CG C   C   AI    +     
Sbjct: 162 NLSNDKLCGKCIKACQAGAINHHMQDEETQ 191



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
            I  ++C  CG C   CPV  +      GL     I   YA  +PN
Sbjct: 104 YIDVNKCTGCGSCAEACPVK-VDDAFNQGLNKRKAIYKLYAQAFPN 148



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 15/45 (33%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
                    +   +C+ CGVC   CP  A    T+        IN
Sbjct: 927 IETDGKAAYVDKRKCMACGVCVEVCPAKAATLVTDERGNTAADIN 971


>gi|46580807|ref|YP_011615.1| heterodisulfide reductase subunit A [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601876|ref|YP_966276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46450227|gb|AAS96875.1| heterodisulfide reductase, A subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562105|gb|ABM27849.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311234513|gb|ADP87367.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris RCH1]
          Length = 652

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C    C+  CP          GE    +    C  CG+C   CP  AI+       +
Sbjct: 584 CIGCG--KCITTCPYGAIEWMELRGETKARVIETVCQGCGICTVTCPQGAIQLQHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 28/85 (32%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYE---------------GENFLAIHPDECID 42
           TYV  + C  C    C+E CP     D F E                     I P  C  
Sbjct: 235 TYVDWDLCTGCGL--CMEKCPSRKSPDAFNEHVGVTTAINIPFPQAIPKKAIIDPTACRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D E  
Sbjct: 293 FVKGKCGVCAKMCPTGAIRYDMEDE 317


>gi|327399634|ref|YP_004340503.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Hippea maritima DSM 10411]
 gi|327182263|gb|AEA34444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Hippea maritima DSM 10411]
          Length = 146

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C+E C     +  E    + +PD C+ C +C   CP   IK DT 
Sbjct: 59  CRHCDDAPCMEACQNGSMHRDERGYVVVNPDTCVGCWMCVMACPYGVIKTDTR 111


>gi|322807875|emb|CBZ05450.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 449

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKH----TDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK     T C   CP D     +  N   I  ++C DCG C   CP  +I
Sbjct: 81  DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSI 135



 Score = 33.6 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE 28
           TY+ TE C  C    CVE CP     +
Sbjct: 113 TYIDTEKCTDCGF--CVEACPTGSILD 137


>gi|308050140|ref|YP_003913706.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307632330|gb|ADN76632.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 211

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            Y ++  C  C    CVE+CP    +   ++ +  +  ++CI C +C   CP DA + D
Sbjct: 63  AYYMSIGCNHCSKPPCVEICPTGAMHKRAKDGIVRVDTEQCIGCEMCAEMCPYDAPQYD 121


>gi|257065446|ref|YP_003145118.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793099|gb|ACV23769.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
            C  C +  C  VCP    Y  E   + I  D+CI C +C   CP +A
Sbjct: 64  ACQHCTNAACKRVCPTGATYRDEMGRIEIDYDKCIGCRMCMAACPFNA 111


>gi|255101316|ref|ZP_05330293.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-63q42]
 gi|255307192|ref|ZP_05351363.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           ATCC 43255]
          Length = 140

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI C    C+ VCP +CF + E F+ +    CI C +CE  C   A
Sbjct: 54  ACIHCNEPKCLGVCPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGA 100


>gi|148381490|ref|YP_001256031.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|153933063|ref|YP_001385865.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|153936232|ref|YP_001389272.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
 gi|148290974|emb|CAL85110.1| iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|152929107|gb|ABS34607.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|152932146|gb|ABS37645.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
          Length = 449

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKH----TDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK     T C   CP D     +  N   I  ++C DCG C   CP  +I
Sbjct: 81  DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSI 135



 Score = 33.6 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE 28
           TY+ TE C  C    CVE CP     +
Sbjct: 113 TYIDTEKCTDCGF--CVEACPTGSILD 137


>gi|160875340|ref|YP_001554656.1| dimethylsulfoxide reductase, chain B [Shewanella baltica OS195]
 gi|160860862|gb|ABX49396.1| dimethylsulfoxide reductase, chain B [Shewanella baltica OS195]
 gi|315267535|gb|ADT94388.1| dimethylsulfoxide reductase, chain B [Shewanella baltica OS678]
          Length = 225

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDE-CIDCGVCEPECPVDAIKPDT 59
            Y  + +C  C    CV+ CP    +   E+ L +  +  CI C  C   CP DA + D 
Sbjct: 78  AYYTSISCNHCSEPVCVKACPTGAMHKRKEDGLVLVEESLCIGCQSCSRACPYDAPQIDR 137

Query: 60  E 60
           +
Sbjct: 138 D 138


>gi|15898855|ref|NP_343460.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus P2]
 gi|284174241|ref|ZP_06388210.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus 98/2]
 gi|13815352|gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus P2]
 gi|261603266|gb|ACX92869.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Sulfolobus
           solfataricus 98/2]
          Length = 612

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGL- 63
           E C  C        CP       +    I    CI CG C P CP  AI  K D      
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRNDKKAEIDNYTCIGCGACVPICPFKAISLKGDKPEKWD 607

Query: 64  ELWL 67
           ELWL
Sbjct: 608 ELWL 611


>gi|16761442|ref|NP_457059.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi
          str. CT18]
 gi|29140861|ref|NP_804203.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi
          str. Ty2]
 gi|213026884|ref|ZP_03341331.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213163416|ref|ZP_03349126.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213649659|ref|ZP_03379712.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
 gi|213857323|ref|ZP_03384294.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
 gi|25512770|pir||AF0822 probable polyferredoxin STY2772 [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16503742|emb|CAD02730.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29136486|gb|AAO68052.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
          Length = 287

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDD 213


>gi|326402523|ref|YP_004282604.1| polysulfide reductase chain B [Acidiphilium multivorum AIU301]
 gi|325049384|dbj|BAJ79722.1| polysulfide reductase chain B [Acidiphilium multivorum AIU301]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +E C  C H  CV+ CP     ++ G N + +    C  C  C   CP D
Sbjct: 55  SERCNHCSHATCVDACPTGASQYWNGSNIVVVDATRCTGCKACIAACPYD 104


>gi|312144150|ref|YP_003995596.1| hypothetical protein Halsa_1824 [Halanaerobium sp. 'sapolanicus']
 gi|311904801|gb|ADQ15242.1| hypothetical protein Halsa_1824 [Halanaerobium sp. 'sapolanicus']
          Length = 380

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +NC+ C   +C   CP       +NF  +  D CI C  C+  CP DA++        L+
Sbjct: 320 DNCVGCG--NCAANCPPKVITMVDNFPEVELDGCIRCFCCQELCPYDAVEIKYPLLARLF 377

Query: 67  LK 68
             
Sbjct: 378 FA 379



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 5/34 (14%)

Query: 34  AIHPDECIDCGVCEPECPVDAI-----KPDTEPG 62
               D C+ CG C   CP   I      P+ E  
Sbjct: 316 VFKKDNCVGCGNCAANCPPKVITMVDNFPEVELD 349


>gi|264678475|ref|YP_003278382.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
 gi|262208988|gb|ACY33086.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
          Length = 220

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 21/101 (20%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           CI C  T C++ CP D          ++  + C  C +C P CPVD I+         G 
Sbjct: 90  CIGC--TLCIKACPTDAILGANKRMHSVSAEHCTGCELCIPVCPVDCIELVNASAEATGW 147

Query: 64  ELWLKINSEYATQW--------------PNITTKKESLPSA 90
             W    +E+A                 P  TT +     A
Sbjct: 148 SAWSAAQAEHARHRYGVHLQRTGRKANAPVRTTAQPPAAEA 188



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 22/83 (26%), Gaps = 36/83 (43%)

Query: 9   CILCKHTDC-------------VEVCPVDC----------------------FYEGENFL 33
           C  C + DC             +  CP                           E    L
Sbjct: 23  CTRCGYPDCASYAKAIASGEAAINQCPPGGQEGVRRLASITGRPELPLNAANGIETPRTL 82

Query: 34  A-IHPDECIDCGVCEPECPVDAI 55
           A I    CI C +C   CP DAI
Sbjct: 83  ALIDEAWCIGCTLCIKACPTDAI 105


>gi|240102116|ref|YP_002958424.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus
          gammatolerans EJ3]
 gi|239909669|gb|ACS32560.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus
          gammatolerans EJ3]
          Length = 165

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAI 55
           ++    CI C    CV  CP D          G   + +    CI C  C+  CP  AI
Sbjct: 22 PHINPRLCIGCG--ACVNACPADALLRIDDYEKGTRKIVLDVGRCIRCARCDEACPTGAI 79

Query: 56 K 56
          +
Sbjct: 80 R 80


>gi|237710174|ref|ZP_04540655.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455636|gb|EEO61357.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 395

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          V+T+    C    C  +CP  C       EG  +  +  + CI+CG+CE  CP+
Sbjct: 3  VITDKVTCCGCWACENICPKHCVVMKEDDEGFRYPEVDVEVCIECGLCEAVCPI 56


>gi|291285965|ref|YP_003502781.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883125|gb|ADD66825.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
          Length = 165

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGE---------NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C +VCP +C + E +             +    CI CG CE  CPVDAI   
Sbjct: 61  CVGCYL--CQKVCPSECIHIETDCGPNGERLIRKYELDLSRCIYCGYCEEVCPVDAIHMG 118

Query: 59  TE 60
            E
Sbjct: 119 WE 120


>gi|237654277|ref|YP_002890591.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
          MZ1T]
 gi|237625524|gb|ACR02214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
          MZ1T]
          Length = 83

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y+GE    I P++C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAIYQGEEIYEIDPNKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPLD 62



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNGAIYQGEE 29


>gi|217970164|ref|YP_002355398.1| NADH dehydrogenase subunit I [Thauera sp. MZ1T]
 gi|217507491|gb|ACK54502.1| NADH-quinone oxidoreductase, chain I [Thauera sp. MZ1T]
          Length = 161

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG CE  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAMAITIESDQRDDGSRRTTRYDIDLTKCIFCGFCEEACPVDAI 116



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 60 ERCIACKLCEAICPAMAITIESDQRDD 86


>gi|197122277|ref|YP_002134228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172126|gb|ACG73099.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 300

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C   CPV    +     +  +P+ C+ C  C   CP D  K +
Sbjct: 104 CMHCLAPGCASACPVKAMSKSPEGPVVYNPNRCMGCRYCMIACPFDVPKYE 154


>gi|148225889|ref|NP_001087331.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|51593201|gb|AAH78569.1| MGC85457 protein [Xenopus laevis]
          Length = 207

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 106 ERCIACKL--CEAACPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 162



 Score = 40.5 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 106 ERCIACKLCEAACPAQAITIEAEPRAD 132



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 147 CIYCGF--CQEACPVDAIVEGPNF 168


>gi|49082534|gb|AAT50667.1| PA0362 [synthetic construct]
          Length = 84

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDT 59
          I  D 
Sbjct: 59 IPLDD 63


>gi|115524538|ref|YP_781449.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53]
 gi|122296203|sp|Q07NL5|NUOI2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|115518485|gb|ABJ06469.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisA53]
          Length = 162

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                       I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTERYDIDMVKCIYCGLCQEACPVDAI 117


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M +VV + C         +VC      +G   LAI PD+C  CG C   CP  AI+  T 
Sbjct: 551 MAHVVEKRCPS-------KVC------KGLGQLAIDPDKCRGCGKCRKICPASAIEGKTR 597

Query: 61  PGLELWL 67
              ++ +
Sbjct: 598 EPHKIDI 604


>gi|332702612|ref|ZP_08422700.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552761|gb|EGJ49805.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 267

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP    F   +  + +    CI C  C   CP  A
Sbjct: 128 CNHCEYPPCVRVCPTKATFQRADGIVLMDFHRCIGCRYCMAGCPYGA 174


>gi|319424969|gb|ADV53043.1| surface localized dimethyl sulfoxide reductase, ferredoxin subunit,
           DmsB [Shewanella putrefaciens 200]
          Length = 226

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  + CI C  C   CP DA + D 
Sbjct: 80  AYYMSIGCNHCNEPVCVKACPTGAMHKRREDGLVQVATELCIGCESCARACPYDAPQLDI 139

Query: 60  E 60
           E
Sbjct: 140 E 140



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 13/70 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V TE CI C+   C   CP D          +   +C  C          +C   CP+ A
Sbjct: 115 VATELCIGCE--SCARACPYDAPQLDIERKVM--TKCDGCSDRLAEGKKPICVDSCPLRA 170

Query: 55  IKPDTEPGLE 64
           +  DT   L+
Sbjct: 171 LDFDTMENLK 180


>gi|311278762|ref|YP_003940993.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1]
 gi|308747957|gb|ADO47709.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  SERCVACNL--CAVACPVGCISLQKAEMQDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPGL 63
           +  PD E G 
Sbjct: 115 QLTPDFELGE 124


>gi|300692634|ref|YP_003753629.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum PSI07]
 gi|299079694|emb|CBJ52371.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum PSI07]
          Length = 82

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPVD 
Sbjct: 1  MALIITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|302877710|ref|YP_003846274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Gallionella capsiferriformans ES-2]
 gi|302580499|gb|ADL54510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gallionella
          capsiferriformans ES-2]
          Length = 84

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D   +G+    I P++C +C        C   CPVD 
Sbjct: 1  MALLITDECINCDV--CEPECPNDAISQGDTIYEIDPNKCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P     +E   ++ ++Y
Sbjct: 59 I-PKDPAHVENNAQLQAKY 76


>gi|257064545|ref|YP_003144217.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792198|gb|ACV22868.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 173

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVD 53
            C  C    CV VCPV      E +  +   P+ CI C  C+  CP D
Sbjct: 53  ACNHCTAPACVAVCPVGALTKREDDGIVVHDPEICIGCLSCQQACPYD 100


>gi|156379274|ref|XP_001631383.1| predicted protein [Nematostella vectensis]
 gi|156218422|gb|EDO39320.1| predicted protein [Nematostella vectensis]
          Length = 182

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 81  ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 137



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 81  ERCIACKLCEAICPAQAITIEAEERAD 107



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 122 CIYCGF--CQEACPVDAIVEGPNF 143


>gi|145355484|ref|XP_001421991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582230|gb|ABP00285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 167

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 122



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 107 CIFCGF--CQEACPVDAIVEGPNFEY 130



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 66 ERCIACKLCEAICPAQAITIEAEERED 92


>gi|20093689|ref|NP_613536.1| heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19]
 gi|190358780|sp|Q8TYP4|HDRA1_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A 1
 gi|19886574|gb|AAM01466.1| Heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19]
          Length = 669

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 22/81 (27%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C EVCP++   E     G                  I  + CI CG
Sbjct: 243 YVDEDACTGCGV--CAEVCPIEVPNEFDLGIGTRKAIYVPFPQAMPLVYTIDMEHCIQCG 300

Query: 45  VCEPECPVD--AIKPDTEPGL 63
           +CE  CP D  AI  D EP  
Sbjct: 301 LCEEACPQDPPAIDFDQEPEE 321



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             V  + C  C    C +VCP D       +G+    +    C  CG C   CP  A++ 
Sbjct: 586 ATVDEDVCGGCG--ACAQVCPFDAIEMVEKDGKRVAEVQDVACQGCGQCAAACPSGAMQL 643

Query: 58  DTEPGLELWLKI 69
                 +L  +I
Sbjct: 644 RYYRDEQLMPQI 655


>gi|114561799|ref|YP_749312.1| twin-arginine translocation pathway signal [Shewanella
           frigidimarina NCIMB 400]
 gi|114333092|gb|ABI70474.1| Twin-arginine translocation pathway signal [Shewanella
           frigidimarina NCIMB 400]
          Length = 228

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C+   CV VCP    F + E+ +  ++ D+C+ C  C   CP D   I P T+   
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKESGIVSVNADKCVGCQYCILACPYDVRFINPVTKAAD 155

Query: 64  E 64
           +
Sbjct: 156 K 156


>gi|332526062|ref|ZP_08402200.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rubrivivax benzoatilyticus JA2]
 gi|332109905|gb|EGJ10533.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Rubrivivax benzoatilyticus JA2]
          Length = 321

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C +  CV+ CP    + E +  + +  D CI C  C   CP  A   +         
Sbjct: 171 CMQCDNPPCVKACPTKATWKEPDGIVVVDYDWCIGCRYCMTACPYWARHFNWTEPQIPAA 230

Query: 68  KINSEYA 74
           + N   +
Sbjct: 231 EFNPNLS 237


>gi|256838495|ref|ZP_05544005.1| flavodoxin [Parabacteroides sp. D13]
 gi|256739414|gb|EEU52738.1| flavodoxin [Parabacteroides sp. D13]
          Length = 268

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ T  CI C+   C+++CP+  F   +  L      CI C +C   CP  +I       
Sbjct: 185 FLNTSTCINCE--KCIKICPMHIFARRDTVLPTDEKNCIQCRLCADNCPTSSIYIHESFL 242

Query: 63  LELWLKINSEYATQWPN 79
             L + I   ++ +  N
Sbjct: 243 NGLRIAIRESFSDKLQN 259


>gi|225630646|ref|YP_002727437.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi]
 gi|225592627|gb|ACN95646.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi]
          Length = 169

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 68  ERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 124



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 68 ERCIACKLCEVICPAQAIVIEAEERED 94



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 109 CIYCGL--CQEACPVDAIVEGPNF 130


>gi|74317665|ref|YP_315405.1| heterodisulfide reductase subunit A [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057160|gb|AAZ97600.1| heterodisulfide reductase, subunit A [Thiobacillus denitrificans
           ATCC 25259]
          Length = 752

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  CK   C   CP     E E  F   +   C  CG C   CPV  I  +
Sbjct: 544 EGCTQCK--RCTVECPFGAIDEDEKRFPVFNESRCRRCGTCMGACPVRVISFE 594


>gi|292492764|ref|YP_003528203.1| electron transport complex, RnfABCDGE type subunit beta
           [Nitrosococcus halophilus Nc4]
 gi|291581359|gb|ADE15816.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus halophilus Nc4]
          Length = 209

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DTE 60
           V+ EN CI C  T C++ CPVD        L  +   EC  C +C   CPVD I+     
Sbjct: 106 VIDENRCIGC--TLCIQACPVDAILGAAKQLHTVIAAECTGCELCVAPCPVDCIEMVPLT 163

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVK 97
           P L  W         +WP     +  LP A +    K
Sbjct: 164 PDLGSW---------KWPFPEVIEPPLPIALQQQKAK 191


>gi|255321043|ref|ZP_05362213.1| ferredoxin [Acinetobacter radioresistens SK82]
 gi|262379542|ref|ZP_06072698.1| ferredoxin [Acinetobacter radioresistens SH164]
 gi|255301867|gb|EET81114.1| ferredoxin [Acinetobacter radioresistens SK82]
 gi|262298999|gb|EEY86912.1| ferredoxin [Acinetobacter radioresistens SH164]
          Length = 87

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +T+ CI C    C+  CP D  YEG     I  + C +C        C   CP+D 
Sbjct: 1  MALHITQQCINCD--MCLPECPNDAIYEGIKIYEIDAERCTECVGFYEQETCMAVCPIDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I+ +       +++   +   ++ ++   K
Sbjct: 59 IELN-----PQYIETQEQLLEKFKHLNQFK 83


>gi|187777468|ref|ZP_02993941.1| hypothetical protein CLOSPO_01035 [Clostridium sporogenes ATCC
           15579]
 gi|187774396|gb|EDU38198.1| hypothetical protein CLOSPO_01035 [Clostridium sporogenes ATCC
           15579]
          Length = 449

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKH----TDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK     T C   CP D     +  N   I  ++C DCG C   CP  +I
Sbjct: 81  DCSMDCKKERGKTFCQNSCPFDAILINKETNSTYIDTEKCTDCGFCVEACPTGSI 135


>gi|218778375|ref|YP_002429693.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759759|gb|ACL02225.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 774

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECP 51
           C  C    C  +CP       E       + + P++CI CG C   CP
Sbjct: 716 CRDCG--ICEAICPQAAITRVEEPGKRFEMVVDPEKCIGCGFCAGACP 761



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  C +DC   G          C DCG+CE  CP  AI    EPG  
Sbjct: 703 VNTCAMDCSSCG---------TCRDCGICEAICPQAAITRVEEPGKR 740


>gi|156933129|ref|YP_001437045.1| NADH dehydrogenase subunit I [Cronobacter sakazakii ATCC BAA-894]
 gi|226737391|sp|A7MPB5|NUOI_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156531383|gb|ABU76209.1| hypothetical protein ESA_00939 [Cronobacter sakazakii ATCC BAA-894]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|304314565|ref|YP_003849712.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg]
 gi|6996551|emb|CAB75573.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588024|gb|ADL58399.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg]
          Length = 251

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VT+ C  C    C   CP      GE         CI CG C   CP DAIK + E G
Sbjct: 129 VTDKCTACG--TCERFCPTGAIRVGETAAV-DRSICIGCGACVNVCPSDAIKLERELG 183



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C    CV VCP D                L +  D C++C VCE  CP  AI+ + 
Sbjct: 161 CIGCG--ACVNVCPSDAIKLERELGPVIETRRLMVDQDACVECLVCEENCPTGAIRIED 217



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  + C+ C    C E CP       +  + +  D+CI C VC  +CPV A+K +
Sbjct: 193 VDQDACVECLV--CEENCPTGAIRIEDGEVVVDGDKCILCEVCSSKCPVAALKLE 245



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 26/76 (34%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP------------------------DEC 40
           + +NC+ C+   C + CPV C    E+   I                          D+C
Sbjct: 76  ILDNCVKCE--ICAQTCPVRCINVVESTATIDEDVTYNLEYLRIPHRTLRMRDIQVTDKC 133

Query: 41  IDCGVCEPECPVDAIK 56
             CG CE  CP  AI+
Sbjct: 134 TACGTCERFCPTGAIR 149



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          +T  C+ C    CVE CPVD   +        I  D C+ C +C   CPV  I
Sbjct: 46 ITPKCVRCNL--CVEECPVDAISDSSASRAARIL-DNCVKCEICAQTCPVRCI 95


>gi|37679436|ref|NP_934045.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           vulnificus YJ016]
 gi|37198180|dbj|BAC94016.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           vulnificus YJ016]
          Length = 265

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 135 SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQ 182


>gi|15604627|ref|NP_221145.1| NADH dehydrogenase subunit I [Rickettsia prowazekii str. Madrid E]
 gi|6647675|sp|Q9ZCF8|NUOI_RICPR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|3861322|emb|CAA15221.1| NADH DEHYDROGENASE I CHAIN I (nuoI) [Rickettsia prowazekii]
 gi|292572444|gb|ADE30359.1| NADH dehydrogenase I chain I [Rickettsia prowazekii Rp22]
          Length = 159

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP         E ++         I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIESDERDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 58 ERCIACKLCEAICPAQAIVIESDERDD 84



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|116749579|ref|YP_846266.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116698643|gb|ABK17831.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1013

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 7    ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            + C  C    CVE CP     + E E    ++   C  CG C   CP +A+        +
Sbjct: 945  DRCSGC--RACVECCPFGAVSYLEREGRCEVNQALCKGCGTCASACPSEAVSLMGFSNPQ 1002

Query: 65   LWLKINSEYAT 75
            ++ +I+   + 
Sbjct: 1003 IYRQIDEALSA 1013



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 25/82 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEGEN---------------FLAIHPDECI--- 41
           Y+  + CI C    C + CP    D F  G N                 AI  + C+   
Sbjct: 106 YIDAKKCIACGV--CAQKCPRKVPDAFNLGLNRRKAAYVKYPQAVPLKYAIDREHCLYFE 163

Query: 42  --DCGVCEPECPVDAIKPDTEP 61
              C  CE  CP  A+  + E 
Sbjct: 164 KGKCRACEKFCPAGAVNFEDED 185



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 12/39 (30%)

Query: 24  DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           D    G     +  D C  C  C   CP  A+      G
Sbjct: 931 DFIVAGGVTAVVEKDRCSGCRACVECCPFGAVSYLEREG 969


>gi|325833013|ref|ZP_08165640.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|325485730|gb|EGC88195.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 205

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C++  C+ VCP    + + +  + I  ++CI C +C   CP +A
Sbjct: 64  ACQHCENPACLRVCPTGATYKDDKGRVEIDYEKCIGCRMCMAACPYNA 111


>gi|296132692|ref|YP_003639939.1| NIL domain protein [Thermincola sp. JR]
 gi|296031270|gb|ADG82038.1| NIL domain protein [Thermincola potens JR]
          Length = 137

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C H  C  +CPV           +A   ++CI CG+C   CPV AI+
Sbjct: 82  DRCTHCGH--CTSLCPVGALYIIRPSMEVAFDEEKCIVCGLCLKACPVKAIE 131


>gi|303316716|ref|XP_003068360.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108041|gb|EER26215.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320038169|gb|EFW20105.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 232

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 131 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 188

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 189 ESP----------NAEYATETREELLYNKEKLLANGDKWE 218


>gi|289808203|ref|ZP_06538832.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 138

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 137


>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
 gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
          Length = 595

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C  T C   CPV       +N   I   +CI CG C  +C   AI
Sbjct: 545 EKCKGC--TLCARQCPVGAISGSVKNPHVIDQTKCIKCGACMEKCKFGAI 592



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I  ++C  C +C  +CPV AI
Sbjct: 539 QYRIEKEKCKGCTLCARQCPVGAI 562


>gi|167470482|ref|ZP_02335186.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis FV-1]
          Length = 190

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 112 AFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIE 165


>gi|115455639|ref|NP_001051420.1| Os03g0774200 [Oryza sativa Japonica Group]
 gi|31745233|gb|AAP68893.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
 gi|108711316|gb|ABF99111.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549891|dbj|BAF13334.1| Os03g0774200 [Oryza sativa Japonica Group]
 gi|215686857|dbj|BAG89707.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767445|dbj|BAG99673.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 223

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 122 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 178



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 122 ERCIACKLCEAICPAQAITIEAEERED 148



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 163 CIYCGF--CQEACPVDAIVEGPNF 184


>gi|78358565|ref|YP_390014.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220970|gb|ABB40319.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 652

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECI- 41
            YV    C  C    C E CP     D F EG                    I P+ CI 
Sbjct: 235 AYVDWSLCTGCG--ACEEKCPARKTYDKFNEGIGRTTAIKIAFPQAIPKKAVITPETCIM 292

Query: 42  ----DCGVCEPECPVDAIKPDTEPG 62
                CG C   CP  AI+ D +  
Sbjct: 293 LTKGKCGNCAKVCPAGAIQFDQKDS 317



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C E CP       E       ++    C  CG+C   CP  AI+       +
Sbjct: 584 CVGCG--KCRETCPFGAIEMTEFRGMPKASVVETVCQGCGICAVTCPQGAIQLQHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648


>gi|22125976|ref|NP_669399.1| electron transport complex protein RnfB [Yersinia pestis KIM 10]
 gi|45441843|ref|NP_993382.1| electron transport complex protein RnfB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807599|ref|YP_651515.1| electron transport complex protein RnfB [Yersinia pestis Antiqua]
 gi|108811875|ref|YP_647642.1| electron transport complex protein RnfB [Yersinia pestis Nepal516]
 gi|149365836|ref|ZP_01887871.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162420711|ref|YP_001606697.1| electron transport complex protein RnfB [Yersinia pestis Angola]
 gi|165927379|ref|ZP_02223211.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938163|ref|ZP_02226722.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010629|ref|ZP_02231527.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166210969|ref|ZP_02237004.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400916|ref|ZP_02306422.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420206|ref|ZP_02311959.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425000|ref|ZP_02316753.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218929341|ref|YP_002347216.1| electron transport complex protein RnfB [Yersinia pestis CO92]
 gi|229894931|ref|ZP_04510109.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|229897673|ref|ZP_04512829.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898319|ref|ZP_04513466.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902178|ref|ZP_04517299.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|270490650|ref|ZP_06207724.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294503722|ref|YP_003567784.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|24638185|sp|Q8ZEC9|RNFB_YERPE RecName: Full=Electron transport complex protein rnfB
 gi|122979617|sp|Q1C7K2|RNFB_YERPA RecName: Full=Electron transport complex protein rnfB
 gi|123073406|sp|Q1CIY8|RNFB_YERPN RecName: Full=Electron transport complex protein rnfB
 gi|226735436|sp|A9R8U7|RNFB_YERPG RecName: Full=Electron transport complex protein rnfB
 gi|21958920|gb|AAM85650.1|AE013811_3 hypothetical protein y2086 [Yersinia pestis KIM 10]
 gi|45436705|gb|AAS62259.1| putative iron-sulfur protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775523|gb|ABG18042.1| iron-sulfur protein [Yersinia pestis Nepal516]
 gi|108779512|gb|ABG13570.1| putative iron-sulfur protein [Yersinia pestis Antiqua]
 gi|115347952|emb|CAL20874.1| putative iron-sulfur protein [Yersinia pestis CO92]
 gi|149292249|gb|EDM42323.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162353526|gb|ABX87474.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis Angola]
 gi|165913824|gb|EDR32442.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165920645|gb|EDR37893.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990331|gb|EDR42632.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166208149|gb|EDR52629.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961901|gb|EDR57922.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049769|gb|EDR61177.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056187|gb|EDR65965.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229681074|gb|EEO77169.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|229688609|gb|EEO80678.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694010|gb|EEO84059.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702026|gb|EEO90047.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|262362158|gb|ACY58879.1| electron transport complex protein RnfB [Yersinia pestis D106004]
 gi|262365491|gb|ACY62048.1| electron transport complex protein RnfB [Yersinia pestis D182038]
 gi|270339154|gb|EFA49931.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294354181|gb|ADE64522.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|320014910|gb|ADV98481.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 188

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIIGATRAMHTVLSDLCTGCDLCVAPCPTDCIE 163


>gi|332704000|ref|ZP_08424088.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554149|gb|EGJ51193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 659

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C    C+  CP        + G+    +    C  CG+C   CP  AI+       +
Sbjct: 584 CIGCG--KCIATCPFGAIEAIDFRGQPKAQVIETVCQGCGICTATCPQGAIQLQHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 28/84 (33%), Gaps = 26/84 (30%)

Query: 3   YVVTENCILCKHTDCVEVCP----VDCFYE---------------GENFLAIHPDECID- 42
           YV  E C  C    C+E CP     D F E                     I P+ C   
Sbjct: 236 YVNWEACTGCGL--CMEKCPSKKAKDDFNEQIGTTTAINIPSPQAIPKKAKIDPEFCRQF 293

Query: 43  ----CGVCEPECPVDAIKPDTEPG 62
               CGVC   CP  AI+ D +  
Sbjct: 294 TKGKCGVCAKICPSGAIEYDQQDE 317


>gi|326561163|gb|EGE11528.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 7169]
 gi|326561574|gb|EGE11915.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 46P47B1]
 gi|326567649|gb|EGE17757.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 12P80B1]
 gi|326567948|gb|EGE18045.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC1]
 gi|326569471|gb|EGE19531.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC8]
 gi|326572766|gb|EGE22752.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC7]
 gi|326574014|gb|EGE23963.1| NADH dehydrogenase subunit I [Moraxella catarrhalis CO72]
 gi|326577456|gb|EGE27340.1| NADH dehydrogenase subunit I [Moraxella catarrhalis O35E]
          Length = 182

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   C+ CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  + + N  Y  +   I+   +   
Sbjct: 118 LTPDFELGEYDRQNLVYEKEHLLISGVGKYPE 149


>gi|308049766|ref|YP_003913332.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
 gi|307631956|gb|ADN76258.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
          Length = 410

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKP 57
          C  C    C + CP     EG +  A  +  D+C+ CG C   CP DAI+ 
Sbjct: 22 CKGCD--ACKKFCPTGAI-EGASGAAHRVDHDKCVGCGQCMINCPFDAIEE 69


>gi|291514608|emb|CBK63818.1| electron transport complex, RnfABCDGE type, B subunit [Alistipes
           shahii WAL 8301]
          Length = 299

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    CV+VC  D      N   I P +C  C  C  ECP  AI+
Sbjct: 221 CIGCG--KCVKVCAFDAITVENNLAYIDPQKCKLCRKCVNECPTGAIR 266



 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 13  KHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
              DCV VC  D  +         +  D+C  CG C   CP
Sbjct: 144 GFGDCVAVCAFDAIHINPETGLPEVDADKCTACGACVKACP 184



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 21/74 (28%)

Query: 4   VVTENCILCKHTDCVEVCP-----------------VDCFYEGENFLAIHPDE--CIDCG 44
           V  + C  C    CV+ CP                 V C  + +  + +   +  CI CG
Sbjct: 168 VDADKCTACG--ACVKACPKMIIELRKKWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCG 225

Query: 45  VCEPECPVDAIKPD 58
            C   C  DAI  +
Sbjct: 226 KCVKVCAFDAITVE 239


>gi|291279681|ref|YP_003496516.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Deferribacter desulfuricans SSM1]
 gi|290754383|dbj|BAI80760.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Deferribacter desulfuricans SSM1]
          Length = 586

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T+ C  CK       CP    +E +  N   I    C++CGVC   CP DAI    E   
Sbjct: 527 TDKCKNCKICYEKFECP--AIFEDKLANAAKIDELLCVNCGVCMSVCPFDAIAYVDEVDD 584

Query: 64  E 64
           E
Sbjct: 585 E 585


>gi|217966538|ref|YP_002352044.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724]
 gi|217335637|gb|ACK41430.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724]
          Length = 378

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C    C   CP        N + I   +CI C  C   CP  AI+ +
Sbjct: 319 EKCIKC--RICENSCPNKAITYDPNKMIIDYKKCISCFCCHELCPQKAIRLE 368



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPD 58
            I  ++CI C +CE  CP  AI  D
Sbjct: 315 VIEDEKCIKCRICENSCPNKAITYD 339


>gi|160936135|ref|ZP_02083508.1| hypothetical protein CLOBOL_01031 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440945|gb|EDP18669.1| hypothetical protein CLOBOL_01031 [Clostridium bolteae ATCC
          BAA-613]
          Length = 464

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C   +C++ CP +         +I+   CIDCG C   CP  A
Sbjct: 15 CKGC--INCIKRCPTEAIRVRGGKASINNKFCIDCGECIRVCPHHA 58


>gi|153004662|ref|YP_001378987.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028235|gb|ABS26003.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 295

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C   CPV    +     +   P +C+ C  C   CP D  K + +
Sbjct: 103 CMHCLAPGCASACPVRAMDKSPEGPVVYDPSKCMGCRYCMVACPFDVPKYEYD 155


>gi|126179637|ref|YP_001047602.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125862431|gb|ABN57620.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 424

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           Y++ + C  C    C+ +CPV+ +                      + +    + CI+CG
Sbjct: 98  YILEDECNGCGD--CIAICPVEVYNRFDAGIGVRKAIYKPHAQAVPDIVVKDNEHCIECG 155

Query: 45  VCEPECPVDAIKPDTEP 61
           +C   C  +AI  + E 
Sbjct: 156 LCYDVCGKEAILREDEE 172


>gi|90413851|ref|ZP_01221838.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
 gi|90325162|gb|EAS41665.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
          Length = 566

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
           +++C LC    CV VCP   F+   G   L +  ++CI CG+CE  CP
Sbjct: 431 SDDCTLC--MSCVAVCPTRAFHAVGGRPGLQLIEEDCIQCGLCEKACP 476



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CV+ CP        + + I+P  C   G C   CP +AI        +
Sbjct: 203 CVDACPAGALSSLGHAIEINPYLCQGVGTCATACPTEAITYALPDPEK 250


>gi|18977042|ref|NP_578399.1| putative ATPase RIL [Pyrococcus furiosus DSM 3638]
 gi|18892677|gb|AAL80794.1| RNase l inhibitor [Pyrococcus furiosus DSM 3638]
          Length = 590

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 13/68 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPD---------ECIDCGVCEPECPVDAI 55
          + C    C H  C  VCPV+    G   + I  +          C  CG+C  +CP  AI
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRM--GGEAIIIDEENYKPIIQEASCTGCGICVHKCPFKAI 66

Query: 56 KPDTEPGL 63
               P  
Sbjct: 67 SIVNLPEQ 74


>gi|24372600|ref|NP_716642.1| NADH dehydrogenase subunit I [Shewanella oneidensis MR-1]
 gi|81744862|sp|Q8EI36|NUOI_SHEON RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24346625|gb|AAN54087.1|AE015546_4 NADH dehydrogenase I, I subunit [Shewanella oneidensis MR-1]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKSERDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|121605833|ref|YP_983162.1| FAD/NAD(P)-binding oxidoreductase subunit [Polaromonas
          naphthalenivorans CJ2]
 gi|120594802|gb|ABM38241.1| benzoyl-CoA oxygenase, component A [Polaromonas naphthalenivorans
          CJ2]
          Length = 427

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 1  MT--YVVTEN------CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          MT  +V+ ++      CI C    C  +CPV           +  ++C  C  C   CP 
Sbjct: 3  MTEIHVIKQHLIDPEICIRCN--TCEAICPVSAITHDSRNYVVDAEKCNFCMACISPCPT 60

Query: 53 DAI 55
           +I
Sbjct: 61 GSI 63



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  D+ 
Sbjct: 14 IDPEICIRCNTCEAICPVSAITHDSR 39


>gi|329904067|ref|ZP_08273662.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae
          bacterium IMCC9480]
 gi|327548151|gb|EGF32865.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 86

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  + G     I P +C +C        C+  CPV  
Sbjct: 1  MALLITDECINCDV--CEPECPNDAIFLGPEIYQIDPGKCTECVGHFNEPQCQQVCPVSC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPFD 62


>gi|325281676|ref|YP_004254218.1| ferredoxin-type protein [Odoribacter splanchnicus DSM 20712]
 gi|324313485|gb|ADY34038.1| ferredoxin-type protein [Odoribacter splanchnicus DSM 20712]
          Length = 505

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 16/76 (21%)

Query: 4   VVTENCI------LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPECPV 52
            V ENCI       C    C E CP          N L I   +PD C+ CG CE  CPV
Sbjct: 413 FVRENCIVNTDETSCG--ACSEHCPTQAVTMIPYKNGLTIPSVNPDICVGCGGCEYVCPV 470

Query: 53  ---DAIKPDTEPGLEL 65
               AI  +  P  + 
Sbjct: 471 RPFRAIYIEGNPVHQE 486



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 17  CVEVCPVD-------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  VCPV         +  G   + I  D C+ CG+CE +C    I
Sbjct: 196 CNTVCPVGTLLGFLSRYSFG--RIRIEADACVSCGLCERQCKAGCI 239


>gi|296112939|ref|YP_003626877.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4]
 gi|295920633|gb|ADG60984.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4]
          Length = 182

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   C+ CG+CE  CP  AI+
Sbjct: 60  ERCVACNL--CAVACPVGCISLQKAEREDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQ 117

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLP 88
              +  L  + + N  Y  +   I+   +   
Sbjct: 118 LTPDFELGEYDRQNLVYEKEHLLISGVGKYPE 149


>gi|294495379|ref|YP_003541872.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
 gi|292666378|gb|ADE36227.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
          Length = 286

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + + C  C    C   CPVD      + L    ++C  CG C   CP  A
Sbjct: 165 IDDKCTRCGL--CETTCPVDAIKIENDTLYFDEEKCNLCGDCVFVCPTSA 212


>gi|255318863|ref|ZP_05360089.1| iron-sulfur cluster-binding protein [Acinetobacter radioresistens
          SK82]
 gi|255304119|gb|EET83310.1| iron-sulfur cluster-binding protein [Acinetobacter radioresistens
          SK82]
          Length = 100

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAIKPD 58
          +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD I   
Sbjct: 18 ITDECINCDV--CEPVCPNEAIFMGEMIYEIHPDLCTECVGHHEQPQCQLFCPVDCI--- 72

Query: 59 TEPGLELWLKINSEYATQWPNITTKKES 86
            P     ++   E   ++  +T +K +
Sbjct: 73 --PHDPNHVETEDELMQKYKMLTAQKSA 98


>gi|238751241|ref|ZP_04612735.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380]
 gi|238710515|gb|EEQ02739.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|242278519|ref|YP_002990648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121413|gb|ACS79109.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 260

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C H  CV VCPV       EG     I+P  CI C  C   CP  A
Sbjct: 73  PCMQCGHPACVPVCPVVATTKDEEGGIVSQIYP-RCIGCRYCMAACPYHA 121


>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           M+Y +  + C  C  + C  +CP      E +    I   +CI CG C   C   AI+
Sbjct: 569 MSYEIDKDKCKGC--SKCARMCPAGAITGEIKKPYTIDQSKCIKCGACMDGCAFKAIQ 624



 Score = 39.0 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             I  D+C  C  C   CP  AI  + +  
Sbjct: 571 YEIDKDKCKGCSKCARMCPAGAITGEIKKP 600


>gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 533

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M Y + +NC  C    C   CP    +  +    I    C DC        C   CP+ +
Sbjct: 1  MPYTIPDNCYSCG--TCKPQCPTGAIHLDDGKYWIESGLCNDCNEYAGEPQCVVHCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PVP 61



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
               PD C  CG C+P+CP  AI  D     + W++
Sbjct: 1  MPYTIPDNCYSCGTCKPQCPTGAIHLD---DGKYWIE 34


>gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus
           litoralis DSM 5473]
          Length = 555

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ + C  C  T C   CPV     E      I  + CI CG C   C  DAIK
Sbjct: 496 IIADKCTGC--TACAIFCPVKAISGEKLKPHVIDQEACIKCGTCYNVCRFDAIK 547



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPD 58
              I  D+C  C  C   CPV AI  +
Sbjct: 493 KYVIIADKCTGCTACAIFCPVKAISGE 519


>gi|170758534|ref|YP_001786732.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405523|gb|ACA53934.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 425

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAIK 56
           + C+ C    C +VCP++     E  L  H         D C+ CGVC   C  +AIK
Sbjct: 292 DRCVGCG--KCTKVCPMEAIKLKETSLEKHSSKIAELSEDLCLGCGVCVKNCKTNAIK 347



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYAT 75
           I+ D C+ CG C   CP++AIK       +   KI +E + 
Sbjct: 289 INKDRCVGCGKCTKVCPMEAIKLKETSLEKHSSKI-AELSE 328


>gi|238763933|ref|ZP_04624890.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC
           33638]
 gi|238784993|ref|ZP_04628991.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC
           43970]
 gi|238697901|gb|EEP90661.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC
           33638]
 gi|238714109|gb|EEQ06123.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC
           43970]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|323476735|gb|ADX81973.1| thiamine pyrophosphate domain, TPP-binding protein [Sulfolobus
           islandicus HVE10/4]
          Length = 612

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGL- 63
           E C  C        CP       +    I    CI CG C P CP  AI  K D      
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAISLKGDKPEKWD 607

Query: 64  ELWL 67
           ELWL
Sbjct: 608 ELWL 611


>gi|291326676|ref|ZP_06125402.2| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291313411|gb|EFE53864.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 206

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CV  CP    +  E +  + +    C+ C  CE  CP  A + D 
Sbjct: 60  SYYLSISCNHCSNPTCVAGCPTGAMHKREEDGLVVVDQSICVGCRYCELRCPYGAPQFDE 119

Query: 60  EPGL 63
           +  L
Sbjct: 120 KKKL 123


>gi|255691579|ref|ZP_05415254.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260622788|gb|EEX45659.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 300

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEP 61
           T +CI C    CV+ CP +      N   I P++C  C  C   CP ++I     P  +P
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNSIIELNFPPRKP 275

Query: 62  GLELWLK 68
             E  ++
Sbjct: 276 KAEEAVE 282



 Score = 40.5 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDETKCTACGACVKACPKAIIE 189


>gi|220932674|ref|YP_002509582.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
 gi|219993984|gb|ACL70587.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
          Length = 287

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP-- 61
           V  E C  C    CV+ C  +      + L + P+ C  CG C+  CP  AIK +     
Sbjct: 62  VDNEKCTGC--RKCVDFCQYNALALMADTLLVFPEICHSCGGCKLICPAGAIKEEKREVG 119

Query: 62  GLELWLKINSE-YATQWPNITTKKESLPSAAKMD-GVKQKYEKYFSPNPGG 110
            L  + KIN   Y  Q    T +++++P   K+   +  K        PG 
Sbjct: 120 KLREF-KINDNLYFFQGELNTGEEQAVPVIEKLKSKINNKKTVIIDAPPGS 169


>gi|242280314|ref|YP_002992443.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           salexigens DSM 2638]
 gi|242123208|gb|ACS80904.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           salexigens DSM 2638]
          Length = 207

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C+  +C+  CP +     +  + I  ++C+ CG C   CP + I
Sbjct: 90  EGCIGCE--ECIRNCPDEAMEMVDGKVVITREKCLVCGYCTNVCPTEVI 136


>gi|188585713|ref|YP_001917258.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350400|gb|ACB84670.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 286

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C E CPV       +   I  ++C++CG+C+ +CP   I  ++E
Sbjct: 234 CLGCG--ICREQCPVGAINLDNDLAVIDQNKCVNCGLCKDKCPTACIVSESE 283



 Score = 43.2 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI      CVE CP +     ++ L  I+ D C  C  C   CP   I+       + ++
Sbjct: 158 CIG--LATCVETCPFEAIEMRDDGLPRINHDICRGCATCVNTCPKSVIRLIPGDRYKHFI 215

Query: 68  KINSE 72
             NS+
Sbjct: 216 YCNSQ 220


>gi|238798411|ref|ZP_04641892.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC
           43969]
 gi|238717725|gb|EEQ09560.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC
           43969]
          Length = 180

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|134296514|ref|YP_001120249.1| ferredoxin [Burkholderia vietnamiensis G4]
 gi|134139671|gb|ABO55414.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           vietnamiensis G4]
          Length = 313

 Score = 51.7 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP--- 57
            ++    CI C  T C++ CPVD        +  I    C  C +C   CPVD I     
Sbjct: 103 AFIDESLCIGC--TLCLQACPVDAIIGAPKQMHTIIEPLCTGCDLCVAPCPVDCIAMVPV 160

Query: 58  -DTEPGLELWLKINSEYAT 75
                G + W +  ++ A 
Sbjct: 161 TGDRTGWDAWSQEQADAAR 179


>gi|257790232|ref|YP_003180838.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474129|gb|ACV54449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 204

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C E CP     +  +   ++I  ++CI CG C   CP +A K D 
Sbjct: 60  SYPLSMSCNHCDSPICFEKCPQSAIIKDADTGLMSIDEEKCIGCGTCAIVCPYNAPKVDE 119

Query: 60  E 60
           E
Sbjct: 120 E 120


>gi|193077843|gb|ABO12720.2| putative 4Fe-4S ferredoxin [Acinetobacter baumannii ATCC 17978]
          Length = 87

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCD--MCLPECPNTAIFEGSKVYQIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|146414379|ref|XP_001483160.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 233

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 132 ERCIACKL--CEAICPAQAITIEAEERADGLRRTYKYDIDMTKCIYCGYCQESCPVDAI 188


>gi|146329455|ref|YP_001209464.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232925|gb|ABQ13903.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 189

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            ++V + CI C  T C++ CPVD      +    +   EC  C +C   CPVD I
Sbjct: 108 AWIVEDWCIGC--TRCIQACPVDAIVGSTQRMHTVLSAECTGCELCIAPCPVDCI 160


>gi|150402632|ref|YP_001329926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033662|gb|ABR65775.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 393

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           E C+ C    C   CPV+      N L  I  + C+ C  C   CPV+ AI    EP L 
Sbjct: 126 EICVSCG--SCENACPVNAISHNNNGLYEIDVNLCVSCKNCVEACPVENAIVTYDEPKLS 183

Query: 65  LWLKI 69
             ++I
Sbjct: 184 EQIEI 188



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGV 45
           M      +CI C   +CVE CP +    G                  L I  + C+ CG 
Sbjct: 76  MPVFDAGSCINCG--NCVESCPTNVLEMGTLRKEASELLWNVPKLVNLLIDEEICVSCGS 133

Query: 46  CEPECPVDAI 55
           CE  CPV+AI
Sbjct: 134 CENACPVNAI 143



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPV-DCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+V E  CI C    C   C V +     +  N   I+P+ C+ CG+C+  CPVDAI
Sbjct: 276 YIVDEEKCIGC--RICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C  + C E CP D           +N        CI+CG C   CP + ++
Sbjct: 47  EKCISC--SACAESCPSDAIKMEYNEEFKKNMPVFDAGSCINCGNCVESCPTNVLE 100



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V   CI C   +CV+VCP     E           C+  G C   CP  AI+
Sbjct: 216 IVPSLCIGCG--NCVDVCPGSIDLERLEVT-----SCVKSGKCLEVCPTTAIR 261



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          P++CI C  C   CP DAIK +     + 
Sbjct: 46 PEKCISCSACAESCPSDAIKMEYNEEFKK 74


>gi|125995233|dbj|BAF47148.1| FdxN [Gloeothece sp. KO68DGA]
          Length = 120

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M++ +TENCI C    C   CP        N   I    C DC        C   CP +
Sbjct: 1  MSHTITENCINC--HRCRVACPTGAIKIRNNVFLIDATLCNDCQGYYGTPQCASVCPTN 57



 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          + CI+C  C   CP  AIK
Sbjct: 7  ENCINCHRCRVACPTGAIK 25


>gi|126178316|ref|YP_001046281.1| hypothetical protein Memar_0366 [Methanoculleus marisnigri JR1]
 gi|125861110|gb|ABN56299.1| protein of unknown function DUF362 [Methanoculleus marisnigri JR1]
          Length = 392

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+  +CI C    C  +CPV      E    I    CI C  C   C   AI
Sbjct: 327 VIASSCIGCG--KCERICPVHAITVAEGKATIDLSRCIRCYCCHEMCTEHAI 376


>gi|53804530|ref|YP_113813.1| NADH dehydrogenase subunit I [Methylococcus capsulatus str. Bath]
 gi|81682188|sp|Q608Y4|NUOI_METCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|53758291|gb|AAU92582.1| NADH dehydrogenase I, I subunit [Methylococcus capsulatus str.
           Bath]
          Length = 171

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAVCPVDCIALQKTEDVDGRWYPEFFRINFSRCILCGLCEEACPTYAIQ 106


>gi|83590444|ref|YP_430453.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573358|gb|ABC19910.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Moorella thermoacetica ATCC 39073]
          Length = 258

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    CV VCP    ++ ++ +  I    CI C  C   CP  A   +         
Sbjct: 120 CNHCDKPPCVRVCPTRATFKRQDGIVMIDYHRCIGCRYCMAACPYGARSFNFRDPRPYIK 179

Query: 68  KINSEYATQWPNITTKK 84
           ++N  Y T+   +  K 
Sbjct: 180 ELNPAYPTREKGVVEKC 196


>gi|145219558|ref|YP_001130267.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Prosthecochloris vibrioformis DSM 265]
 gi|145205722|gb|ABP36765.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
          phaeovibrioides DSM 265]
          Length = 62

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M + +T+ C  C    C   CPV     G++   I+   C+DC        C   CPVD 
Sbjct: 1  MAHRITDECTYCG--ACEPECPVSAITPGDDLYVINESVCVDCVGHHDEPACVAICPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DEC  CG CEPECPV AI P  +
Sbjct: 7  DECTYCGACEPECPVSAITPGDD 29


>gi|325525592|gb|EGD03378.1| putative dimethyl sulfoxide reductase subunit [Burkholderia sp.
           TJI49]
          Length = 247

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|302343184|ref|YP_003807713.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Desulfarculus baarsii DSM 2075]
 gi|301639797|gb|ADK85119.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 632

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 11  LCK-HTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            CK H DC+    CP   FY   +  AI+  +CI C +C   CP +AI P  E 
Sbjct: 581 KCKNHRDCINTVACP--AFYIAGDQPAINASQCIGCALCAQICPENAITPVKEA 632


>gi|298674635|ref|YP_003726385.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303]
 gi|298287623|gb|ADI73589.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 623

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V +NC  C    C +VC ++           + + CI CG C   CP DA
Sbjct: 493 VNDNCNGCG--RCADVCKLEAISVRGTTSYTNYNVCIGCGKCIKACPNDA 540


>gi|261369003|ref|ZP_05981886.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
 gi|282568874|gb|EFB74409.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
          Length = 247

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C   CP     +  +     P  CI C  C   CPV+A +PD + 
Sbjct: 176 CIDCG--RCAAACPTGAI-DAADPRQTDPARCIGCMRCVRLCPVEARRPDADA 225


>gi|262378879|ref|ZP_06072036.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
 gi|262300164|gb|EEY88076.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
          Length = 87

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIFMGEMIYEIHPDLCTECVGHHEQPQCQLFCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKKES 86
          I     P     ++   E   ++  +T +K +
Sbjct: 59 I-----PHDPNHVETEDELMQKYKMLTAQKSA 85


>gi|255527517|ref|ZP_05394385.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
 gi|255508787|gb|EET85159.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
          Length = 426

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPEC 50
          E C  C    C EVCPVD   EG++ +   I  D+C+ CG C   C
Sbjct: 13 ELCTGC--RRCSEVCPVDAI-EGKDGVPQHIDTDKCVMCGQCVQVC 55



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I  + C  C  C   CPVDAI+
Sbjct: 10 IDEELCTGCRRCSEVCPVDAIE 31


>gi|224367545|ref|YP_002601708.1| PflC1 [Desulfobacterium autotrophicum HRM2]
 gi|223690261|gb|ACN13544.1| PflC1 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    CV+ CP         + + +   +CI CG C   C  +AI+
Sbjct: 55  CIGCG--KCVKACPQGALEISSSDSIVLDAKKCIACGKCVDVCCANAIE 101



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 21 CPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CP+ C           +  +  +  +CI CG C   CP  A++
Sbjct: 29 CPMTCIWCHNPEGLSTKRHIVRYDKKCIGCGKCVKACPQGALE 71


>gi|218885175|ref|YP_002434496.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756129|gb|ACL07028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 259

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP    F   +  + +    CI C  C   CP  A
Sbjct: 122 CNHCENPPCVRVCPTKATFKRADGIVVMDYHRCIGCRFCMAGCPYGA 168


>gi|134045161|ref|YP_001096647.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662786|gb|ABO34432.1| membrane-bound hydrogenase subunit ehaP [Methanococcus maripaludis
           C5]
          Length = 393

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGV 45
           M      +CI C   +CVE CP +    G                  L I  + C+ CG 
Sbjct: 76  MPVFDAGSCINCG--NCVESCPTNVLEMGTLRKEATELLWNVPKLVNLLIDEEICVSCGS 133

Query: 46  CEPECPVDAI 55
           CE  CPVDAI
Sbjct: 134 CENACPVDAI 143



 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           E C+ C    C   CPVD      N L  I  + C+ C  C   CPV+ AI    E GL 
Sbjct: 126 EICVSCG--SCENACPVDAISHNSNGLYEIDVNLCVSCKNCVEACPVENAIVTYDESGLS 183

Query: 65  LWLKI 69
             ++I
Sbjct: 184 EKIEI 188



 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C    C   C V          N   I+P+ C+ CG+C+  CPVDAI
Sbjct: 278 VDEEKCIGC--RICYRACNVPEAVSISNETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C  + C E CP D           +N        CI+CG C   CP + ++
Sbjct: 47  EKCISC--SACAESCPSDAIKMEYNEEFKKNMPVFDAGSCINCGNCVESCPTNVLE 100



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V   CI C   +CV+VC      E           C+ CG C   CP  AI+     
Sbjct: 216 IVPSLCIGCG--NCVDVCSGSIDLERLEVT-----SCVRCGKCLEVCPTTAIRIGIPE 266



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          P++CI C  C   CP DAIK +     + 
Sbjct: 46 PEKCISCSACAESCPSDAIKMEYNEEFKK 74



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDECIDCGVCEPEC 50
           +C+ C    C+EVCP      G              +  ++CI C +C   C
Sbjct: 244 SCVRCG--KCLEVCPTTAIRIGIPEKITKRTAECYLVDEEKCIGCRICYRAC 293


>gi|41615088|ref|NP_963586.1| putative ATPase RIL [Nanoarchaeum equitans Kin4-M]
 gi|40068812|gb|AAR39147.1| NEQ299 [Nanoarchaeum equitans Kin4-M]
          Length = 574

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 11 LCKHTDCVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C + +C   CP++     C    +    I    CI CG+C  +CP  AIK
Sbjct: 18 KCNY-ECYNFCPLNRAGKKCIEIIDGKPVIDESICIGCGLCVKKCPFKAIK 67


>gi|24373008|ref|NP_717050.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
 gi|24347167|gb|AAN54495.1|AE015587_4 anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           oneidensis MR-1]
          Length = 224

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  + CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSQPVCVKACPTGAMHKRREDGLVQVATELCIGCESCARACPYDAPQLDI 137

Query: 60  E 60
           E
Sbjct: 138 E 138



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V TE CI C+   C   CP D          +   +C  C          +C   CP+ A
Sbjct: 113 VATELCIGCE--SCARACPYDAPQLDIERKVM--TKCDGCSDRLAEGKKPICVDSCPLRA 168

Query: 55  IKPDTEPGLE 64
           +  DT   L 
Sbjct: 169 LDFDTMDNLR 178


>gi|146291733|ref|YP_001182157.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563423|gb|ABP74358.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 224

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  + CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCNEPVCVKACPTGAMHKRREDGLVQVATELCIGCESCARACPYDAPQLDI 137

Query: 60  E 60
           E
Sbjct: 138 E 138



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 13/70 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           V TE CI C+   C   CP D          +   +C  C          +C   CP+ A
Sbjct: 113 VATELCIGCE--SCARACPYDAPQLDIERKVM--TKCDGCSDRLAEGKKPICVDSCPLRA 168

Query: 55  IKPDTEPGLE 64
           +  DT   L+
Sbjct: 169 LDFDTMENLK 178


>gi|330830052|ref|YP_004393004.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565]
 gi|328805188|gb|AEB50387.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565]
          Length = 180

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKSEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|323475168|gb|ADX85774.1| ABC transporter related protein [Sulfolobus islandicus REY15A]
 gi|323477900|gb|ADX83138.1| ABC transporter related protein [Sulfolobus islandicus HVE10/4]
          Length = 602

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 22 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 81

Query: 64 ELWLKIN 70
              K+N
Sbjct: 82 IHRYKVN 88


>gi|313887323|ref|ZP_07821014.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|312923242|gb|EFR34060.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
          PR426713P-I]
          Length = 393

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          + C  C+   C ++CP  C       EG ++  +  D CI+C  CE  CP 
Sbjct: 8  QRCCGCE--ACRQICPKGCIRLERDEEGFDYPIVDTDRCIECHKCERVCPF 56


>gi|284998328|ref|YP_003420096.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5]
 gi|284446224|gb|ADB87726.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5]
          Length = 602

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 22 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 81

Query: 64 ELWLKIN 70
              K+N
Sbjct: 82 IHRYKVN 88


>gi|229585345|ref|YP_002843847.1| ATPase RIL [Sulfolobus islandicus M.16.27]
 gi|228020395|gb|ACP55802.1| ABC transporter related [Sulfolobus islandicus M.16.27]
          Length = 602

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 22 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 81

Query: 64 ELWLKIN 70
              K+N
Sbjct: 82 IHRYKVN 88


>gi|229581623|ref|YP_002840022.1| putative ATPase RIL [Sulfolobus islandicus Y.N.15.51]
 gi|228012339|gb|ACP48100.1| ABC transporter related [Sulfolobus islandicus Y.N.15.51]
          Length = 602

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 22 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 81

Query: 64 ELWLKIN 70
              K+N
Sbjct: 82 IHRYKVN 88


>gi|229579709|ref|YP_002838108.1| ATPase RIL [Sulfolobus islandicus Y.G.57.14]
 gi|228010424|gb|ACP46186.1| ABC transporter related [Sulfolobus islandicus Y.G.57.14]
          Length = 602

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 22 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 81

Query: 64 ELWLKIN 70
              K+N
Sbjct: 82 IHRYKVN 88


>gi|227828106|ref|YP_002829886.1| ATPase RIL [Sulfolobus islandicus M.14.25]
 gi|238620306|ref|YP_002915132.1| putative ATPase RIL [Sulfolobus islandicus M.16.4]
 gi|227459902|gb|ACP38588.1| ABC transporter related [Sulfolobus islandicus M.14.25]
 gi|238381376|gb|ACR42464.1| ABC transporter related [Sulfolobus islandicus M.16.4]
          Length = 602

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 22 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 81

Query: 64 ELWLKIN 70
              K+N
Sbjct: 82 IHRYKVN 88


>gi|227830813|ref|YP_002832593.1| ATPase RIL [Sulfolobus islandicus L.S.2.15]
 gi|227457261|gb|ACP35948.1| ABC transporter related [Sulfolobus islandicus L.S.2.15]
          Length = 600

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK-----PDTEPGL 63
          C+  CPVD          +       I+ + CI CG+C  +CP +AI       + E  +
Sbjct: 20 CINFCPVDRSGGKAIELSDIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPDELEGEV 79

Query: 64 ELWLKIN 70
              K+N
Sbjct: 80 IHRYKVN 86


>gi|257792145|ref|YP_003182751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488764|ref|ZP_07947298.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|257476042|gb|ACV56362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912134|gb|EFV33709.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 205

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C++  C+ VCP    + + +  + I  ++CI C +C   CP +A
Sbjct: 64  ACQHCENPACLRVCPTGATYKDDKGRVEIDYEKCIGCRMCMAACPYNA 111


>gi|258406484|ref|YP_003199226.1| nitroreductase [Desulfohalobium retbaense DSM 5692]
 gi|257798711|gb|ACV69648.1| nitroreductase [Desulfohalobium retbaense DSM 5692]
          Length = 273

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C   +C   CP  C         IH   CI C  C   CP  A+    +   +
Sbjct: 9  DRCIQCG--ECAADCPAMCISLDNGLPEIHEKRCIRCQHCLAVCPTAALSILDKDPDD 64



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I  D CI CG C  +CP   I  D
Sbjct: 6  IDEDRCIQCGECAADCPAMCISLD 29


>gi|224418757|ref|ZP_03656763.1| hypothetical protein HcanM9_05713 [Helicobacter canadensis MIT
           98-5491]
 gi|253826716|ref|ZP_04869601.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313142273|ref|ZP_07804466.1| polysulfide reductase chain B [Helicobacter canadensis MIT 98-5491]
 gi|253510122|gb|EES88781.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Helicobacter
           canadensis MIT 98-5491]
 gi|313131304|gb|EFR48921.1| polysulfide reductase chain B [Helicobacter canadensis MIT 98-5491]
          Length = 189

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C +C+HT CV VCP    +  E+ +  I  ++C+ C  C   CP +A
Sbjct: 58  SCEMCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNA 105


>gi|239627939|ref|ZP_04670970.1| fe-S cluster domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518085|gb|EEQ57951.1| fe-S cluster domain-containing protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 466

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C   +C++ CP +         +I+   CIDCG C   CP  A
Sbjct: 15 CKGC--INCIKRCPTEAIRVRGGKASINNKFCIDCGECIRVCPHHA 58


>gi|223041744|ref|ZP_03611937.1| electron transport complex protein RnfB [Actinobacillus minor 202]
 gi|223017428|gb|EEF15846.1| electron transport complex protein RnfB [Actinobacillus minor 202]
          Length = 203

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        +  +  D C  C +C   CP + I+
Sbjct: 109 AFIHEDMCIGC--TKCIQACPVDAIIGTNKAMHTVIADLCTGCELCVAPCPTNCIE 162



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 22  PVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           P     E        IH D CI C  C   CPVDAI
Sbjct: 96  PAMEGEEAPEAKVAFIHEDMCIGCTKCIQACPVDAI 131


>gi|206576263|ref|YP_002237331.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342]
 gi|288934261|ref|YP_003438320.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22]
 gi|290508464|ref|ZP_06547835.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55]
 gi|206565321|gb|ACI07097.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342]
 gi|288888990|gb|ADC57308.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22]
 gi|289777858|gb|EFD85855.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55]
          Length = 180

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  KPDTEPGLELW 66
           +   +  L  +
Sbjct: 115 QLTPDFELGEY 125


>gi|82523739|emb|CAI78739.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnB [uncultured
           gamma proteobacterium]
          Length = 209

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA---IKP 57
            ++    CI C  T C++ CPVD        +  +   EC  C +C   CPVD    I P
Sbjct: 115 AFIRENECIGC--TKCIQACPVDAILGAAKQMHTVIASECTGCDLCVEPCPVDCIDMIYP 172

Query: 58  DTEPGLELW 66
           +       W
Sbjct: 173 EESLQTWHW 181



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 27  YEGENFLAIHPDECIDCGVCEPECPVDAI 55
             G     I  +ECI C  C   CPVDAI
Sbjct: 109 TRGPAVAFIRENECIGCTKCIQACPVDAI 137


>gi|326390414|ref|ZP_08211972.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993532|gb|EGD51966.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 577

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C+ + CP     + +   +I PD+C  C VC   CP DAI+
Sbjct: 528 DKCKKCGL--CLRIGCP--AISKKDGIFSIDPDQCTGCTVCMQVCPFDAIE 574


>gi|291280075|ref|YP_003496910.1| molybdopterin oxidoreductase 4Fe-4S ferredoxin, iron-sulfur binding
           protein [Deferribacter desulfuricans SSM1]
 gi|290754777|dbj|BAI81154.1| molybdopterin oxidoreductase, 4Fe-4S ferredoxin, iron-sulfur
           binding protein [Deferribacter desulfuricans SSM1]
          Length = 185

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP    Y+ E+ +  +  ++CI C  C   CP DA
Sbjct: 63  CQQCENPPCVHVCPTQASYQTEDGVVLVDHNKCILCKYCMTACPYDA 109


>gi|240102301|ref|YP_002958609.1| formate hydrogenlyase I subunit G (Mhy1G) [Thermococcus
           gammatolerans EJ3]
 gi|239909854|gb|ACS32745.1| formate hydrogenlyase I subunit G (Mhy1G) [Thermococcus
           gammatolerans EJ3]
          Length = 201

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-FYE-----GENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  E CI C    CV  CP D    E     G   L  +   CI C  C   CP  A+
Sbjct: 47  PHINPEKCIGCG--ACVNACPPDALILEWDKEHGVKRLTFNAARCIRCHRCVEVCPTGAM 104

Query: 56  KP 57
           +P
Sbjct: 105 EP 106



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I+P++CI CG C   CP DA+  + +   
Sbjct: 48 HINPEKCIGCGACVNACPPDALILEWDKEH 77


>gi|161502534|ref|YP_001569646.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863881|gb|ABX20504.1| hypothetical protein SARI_00578 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|323130652|gb|ADX18082.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628528|gb|EGE34871.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 190

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 68  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 125

Query: 57  --PDTEPGL 63
             PD E G 
Sbjct: 126 LTPDFELGE 134


>gi|297583775|ref|YP_003699555.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142232|gb|ADH98989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           selenitireducens MLS10]
          Length = 179

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           +V   C+ C    CV+VC     +  E    +A +PD+C  C  C   CP DA
Sbjct: 53  IVPVQCMHCDDAPCVKVCSTQATFKVEENGIVAFNPDKCTGCKACMAACPYDA 105


>gi|152971209|ref|YP_001336318.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895798|ref|YP_002920534.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae NTUH-K2044]
 gi|262043321|ref|ZP_06016450.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330003563|ref|ZP_08304678.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3]
 gi|150956058|gb|ABR78088.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548116|dbj|BAH64467.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039345|gb|EEW40487.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536903|gb|EGF63202.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETVDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  K--PDTEPGL 63
           +  PD E G 
Sbjct: 115 QLTPDFELGE 124


>gi|187927353|ref|YP_001897840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Ralstonia pickettii 12J]
 gi|309779946|ref|ZP_07674700.1| ferredoxin [Ralstonia sp. 5_7_47FAA]
 gi|187724243|gb|ACD25408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
          pickettii 12J]
 gi|308921305|gb|EFP66948.1| ferredoxin [Ralstonia sp. 5_7_47FAA]
          Length = 87

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|315054381|ref|XP_003176565.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311338411|gb|EFQ97613.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 227

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 126 ERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 183

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 184 ESP----------NAEYATETREELLYNKEKLLANGDKWE 213


>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
 gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
          Length = 573

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  E C  C  T C   CP +      +N   I  ++C+ CG C  +C   AI 
Sbjct: 519 YIDPEKCKGC--TLCARNCPANAITGTVKNPHVIDGEKCLKCGACMEKCKFGAIY 571



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I P++C  C +C   CP +AI
Sbjct: 518 FYIDPEKCKGCTLCARNCPANAI 540


>gi|269839557|ref|YP_003324249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791287|gb|ACZ43427.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 205

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C+     C +VCPV         +     P  CI C  C   CP    K D E
Sbjct: 54  CMHCEDPVAPCAQVCPVMAILITPEGVVQMADPSRCIACRNCVYACPFGVPKMDLE 109


>gi|218262922|ref|ZP_03477229.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223064|gb|EEC95714.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii
           DSM 18315]
          Length = 315

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT-EPGLE 64
              CI C    C + CP +      N   I   +C  C  C   CP  AI      P  E
Sbjct: 216 ANACIGCG--KCAKECPFEAITVENNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
               ++++   +       K + P A  +     K E
Sbjct: 274 AAPAVDAD---KVKPKVAPKPAAPKAEVLKTETPKVE 307



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DCV  C  D  +         +  D+C  CG C   CP + I+
Sbjct: 142 GYGDCVAACNFDAIHINLETGLPEVDEDKCTSCGACVKACPKNIIE 187


>gi|242013397|ref|XP_002427394.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212511768|gb|EEB14656.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 204

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 103 ERCIACKL--CEAICPAQAITIEAEERSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 159



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 144 CIYCGF--CQEACPVDAIVEGPNFEY 167



 Score = 36.7 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + E 
Sbjct: 103 ERCIACKLCEAICPAQAITIEAEE 126


>gi|205353207|ref|YP_002227008.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272988|emb|CAR37935.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628293|gb|EGE34636.1| thiosulfate reductase electron transport protein PhsB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 192

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP    Y  EN +  +    CI C  C   CP 
Sbjct: 63  SCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYCVAGCPF 108


>gi|218296298|ref|ZP_03497054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
           aquaticus Y51MC23]
 gi|218243370|gb|EED09900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
           aquaticus Y51MC23]
          Length = 313

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY---EGENFLAIHP-DECIDCGVCEPECPVDAIKPDTE 60
           V E C LC    C  VCP +      EGE ++ +   + C  CG C   CP   I+ +  
Sbjct: 235 VEEGCTLC--PVCANVCPTEAVRRVREGEEYVLLLKVEACTGCGACVESCPPQVIRLEEA 292

Query: 61  PGLELWLKINSEYATQWP 78
           P  EL  ++  E     P
Sbjct: 293 PKEELHQEV--ELFRGKP 308



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          C +VCP          + +    C  CG+C   CP  A++       E  +
Sbjct: 39 CYQVCPRGAVRLEGWRVELDEVLCTGCGLCTGVCPGVALEYPLGAIQEALI 89


>gi|150398828|ref|YP_001322595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011531|gb|ABR53983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 397

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT+ C+ C    CV  CPV           +    CI C +C   CP +AI 
Sbjct: 130 VVTDTCVGCG--ICVPECPVASISLENEKAVVDKKSCIYCSICAQTCPWNAIF 180



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E CI C    C + CP +     ++ +AI P  C  CG+C   CPVDA+    E G 
Sbjct: 198 VDDELCIGCGD--CTDKCPRNLIVV-KDMVAIPPKGCPACGLCVSTCPVDAVDLKVEYGQ 254

Query: 64  EL 65
             
Sbjct: 255 AK 256



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVD------CFYEGENFLAIHP------DECIDCGVCEPECPVDAIK 56
           C+ C  T CV++CP D           +    I        D C+ CG+C PECPV +I 
Sbjct: 94  CVGC--TKCVDICPDDYVGMEGIIEPAKRNFVIPKEPIVVTDTCVGCGICVPECPVASIS 151

Query: 57  PDTE 60
            + E
Sbjct: 152 LENE 155



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 10/53 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVD 53
           CI C    CV++CP      G+        + +   P  C +CG C   CP D
Sbjct: 310 CIRCG--ACVQICPTGALRLGKINHKGKDYDRIEFSPSLCNNCGKCIETCPYD 360



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 9   CILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    CV  CPVD                  +    ++C+ CG C  +CP  AI   
Sbjct: 231 CPACGL--CVSTCPVDAVDLKVEYGQAKPATSEGIIWDEEKCVYCGPCAIKCPNKAIAVV 288

Query: 59  TEPGLE 64
              GLE
Sbjct: 289 NPKGLE 294


>gi|157962637|ref|YP_001502671.1| dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
 gi|157847637|gb|ABV88136.1| Dimethylsulfoxide reductase chain B [Shewanella pealeana ATCC
           700345]
          Length = 221

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  D CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQDLCIGCESCARACPYDAPQIDR 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|73667819|ref|YP_303834.1| hypothetical protein Mbar_A0270 [Methanosarcina barkeri str.
           Fusaro]
 gi|72394981|gb|AAZ69254.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 377

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T NC LCK   CV  C      E    L I+ ++CI C  C   CP DA++
Sbjct: 314 TSNCALCK--ACVSNCSAHAIEEINRTLKINEEKCIHCYCCRELCPNDAVE 362


>gi|21227754|ref|NP_633676.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20906156|gb|AAM31348.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 59

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V  E C  C    CV+ CPV+     E E    +  DEC+DCG CE  CP+ AIK +
Sbjct: 5  VNKEECTGCG--TCVDECPVEAIIIDEDEGCAVVDEDECVDCGACEDVCPIGAIKVE 59



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ +EC  CG C  ECPV+AI  D + G
Sbjct: 5  VNKEECTGCGTCVDECPVEAIIIDEDEG 32


>gi|148261628|ref|YP_001235755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|146403309|gb|ABQ31836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
          Length = 247

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C++  CV VCP    +   E+ +  ++ D CI C +C   CP  A + D   G
Sbjct: 83  SCLHCENPLCVTVCPTGASYKRAEDGIVLVNTDICIGCKLCSWACPYGAREFDEHDG 139


>gi|126175400|ref|YP_001051549.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella baltica OS155]
 gi|153001705|ref|YP_001367386.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Shewanella baltica OS185]
 gi|160876443|ref|YP_001555759.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Shewanella baltica OS195]
 gi|217972359|ref|YP_002357110.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Shewanella baltica OS223]
 gi|304410225|ref|ZP_07391844.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella baltica OS183]
 gi|307302064|ref|ZP_07581822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella baltica BA175]
 gi|125998605|gb|ABN62680.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          baltica OS155]
 gi|151366323|gb|ABS09323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
          baltica OS185]
 gi|160861965|gb|ABX50499.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
          baltica OS195]
 gi|217497494|gb|ACK45687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
          baltica OS223]
 gi|304351634|gb|EFM16033.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella baltica OS183]
 gi|306914102|gb|EFN44523.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella baltica BA175]
 gi|315268633|gb|ADT95486.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella baltica OS678]
          Length = 83

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I PD C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPDRCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTK 83
          I PD        ++ N E   ++  +T K
Sbjct: 59 IDPD-----PNRVESNDELLVKFAVLTQK 82


>gi|226942509|ref|YP_002797582.1| 4Fe-4S ferredoxin [Azotobacter vinelandii DJ]
 gi|226717436|gb|ACO76607.1| 4Fe-4S ferredoxin [Azotobacter vinelandii DJ]
          Length = 83

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I  + C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDSNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTK 83
          I     P  E  ++   E   ++  IT K
Sbjct: 59 I-----PHDENRVESREELMRKYLIITGK 82


>gi|332029694|gb|EGI69573.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Acromyrmex echinatior]
          Length = 197

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 96  ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 152



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 96  ERCIACKLCEAICPAQAITIEAEERAD 122



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 137 CIYCGF--CQEACPVDAIVEGPNF 158


>gi|330812393|ref|YP_004356855.1| ferredoxin [Pseudomonas brassicacearum subsp. brassicacearum
          NFM421]
 gi|327380501|gb|AEA71851.1| putative ferredoxin [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 83

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D     
Sbjct: 59 IPLDEAHPE 67


>gi|327308414|ref|XP_003238898.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS
           118892]
 gi|326459154|gb|EGD84607.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS
           118892]
          Length = 227

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 126 ERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 183

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 184 ESP----------NAEYATETREELLYNKEKLLANGDKWE 213


>gi|332162149|ref|YP_004298726.1| Fe-S-cluster-containing hydrogenase components 1 [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606201|emb|CBY27699.1| nrfc protein [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666379|gb|ADZ43023.1| Fe-S-cluster-containing hydrogenase components 1 [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330864043|emb|CBX74121.1| protein nrfC [Yersinia enterocolitica W22703]
          Length = 223

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    Y       + ++PD C+ C  C   CP 
Sbjct: 91  SCQHCDKAPCVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPY 137


>gi|308273558|emb|CBX30160.1| hypothetical protein N47_D29690 [uncultured Desulfobacterium sp.]
          Length = 168

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           C  C+   C+  C        ++ + +   D+CI C  C   CP   I
Sbjct: 63  CRHCEDAPCMHACISGAIIRTQDGVVLTDKDKCIGCWTCVMVCPYGVI 110


>gi|302339324|ref|YP_003804530.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636509|gb|ADK81936.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 552

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 3/43 (6%)

Query: 16  DCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
            C+  CPV       +   I     D C  CG C   CP  AI
Sbjct: 428 PCISACPVGAITMTPSLTGIPRLDSDLCTGCGRCLSVCPGQAI 470


>gi|255523131|ref|ZP_05390103.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|255513246|gb|EET89514.1| nitroreductase [Clostridium carboxidivorans P7]
          Length = 266

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V    C+ C    C +VCP    Y  E+    + + CI CG C   CP  A
Sbjct: 6  VNESLCVKCG--ACTKVCPTTALYMKEDGPKNNNNSCIACGQCAAVCPCGA 54



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          N + ++   C+ CG C   CP  A+    +  
Sbjct: 2  NLIKVNESLCVKCGACTKVCPTTALYMKEDGP 33


>gi|255019915|ref|ZP_05291990.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970695|gb|EET28182.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
          Length = 163

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP       GE             I   +CI CG+CE  CPVD+I
Sbjct: 62  ERCISCKL--CEAVCPALAITIRGEERADGTRRTTAYDIDLSKCIFCGLCEESCPVDSI 118


>gi|302879566|ref|YP_003848130.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582355|gb|ADL56366.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella
           capsiferriformans ES-2]
          Length = 182

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CI C  T C++ CPVD        +  I   EC  C +C   CPVD I  +  P 
Sbjct: 112 CIGC--TLCIQACPVDAIVGAAKQMHTIIAAECTGCELCLAPCPVDCISMEPIPD 164



 Score = 37.1 bits (85), Expect = 0.91,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 107 IDESTCIGCTLCIQACPVDAI 127


>gi|258405352|ref|YP_003198094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797579|gb|ACV68516.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 189

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHP-DECIDCGVCEPECPVDAIKP 57
            C  C++  C+ VCPV  +Y   E+ + +H  D+CI CG C   CP  A + 
Sbjct: 58  ACNHCENPTCLNVCPVKAYYKREEDGIVVHEQDKCIGCGNCIRSCPYGAPRY 109


>gi|218779474|ref|YP_002430792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfatibacillum alkenivorans AK-01]
 gi|218760858|gb|ACL03324.1| Putative uncharacterized protein(contains glutamate synthase domain
            and a partial HdrA domain) [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1115

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPVDAIKPD 58
            V  + C  C    CV VCP       +N +      +    C  CG C   CP +A   D
Sbjct: 1043 VDADRCRGCG--SCVAVCPYQAIGLKQNTVGGWYAFVDEALCKGCGNCISVCPNNA--AD 1098

Query: 59   TEPGLELWLK 68
            +    + +L+
Sbjct: 1099 SPYRNQKYLE 1108



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 34  AIHPDECIDCGVCEPECPVD 53
            + P+ C  CG C   CPV 
Sbjct: 105 YVDPERCTLCGKCVEACPVT 124


>gi|160879922|ref|YP_001558890.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
 gi|160428588|gb|ABX42151.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
          Length = 317

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++C  CK    VE CP+      ++ L++  D C +CG C  +C  D I+ 
Sbjct: 172 DSCNSCKKCSVVESCPMSAATLEDDVLSLDKDACNNCGRCVGKCHFDCIED 222


>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
          subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +E C  C    CVE CP + +     +G+ +L +   +C+ CG+CE  CP  AI+
Sbjct: 37 SEKCKACNV--CVETCPTNAYTWIEEQGKRYLQLSHAKCVFCGMCEEVCPYKAIR 89


>gi|46578589|ref|YP_009397.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603833|ref|YP_968233.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46448000|gb|AAS94656.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564062|gb|ABM29806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311232514|gb|ADP85368.1| hypothetical protein Deval_0197 [Desulfovibrio vulgaris RCH1]
          Length = 333

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECP 51
            C  C    CV VCP       E +  +AI  D C+ C  C   CP
Sbjct: 58  PCFQCDEPWCVPVCPTGAIAKRESDGIVAIDADTCVGCKACITACP 103


>gi|323474197|gb|ADX84803.1| thiamine pyrophosphate protein domain protein TPP-binding protein
           [Sulfolobus islandicus REY15A]
          Length = 612

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGL- 63
           E C  C        CP       +    I    CI CG C P CP  AI  K D      
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAISLKGDKPEKWD 607

Query: 64  ELWL 67
           ELWL
Sbjct: 608 ELWL 611


>gi|300717644|ref|YP_003742447.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661]
 gi|299063480|emb|CAX60600.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661]
          Length = 180

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|289523594|ref|ZP_06440448.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503286|gb|EFD24450.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 619

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E C+ CK   C+    CP   F E      +    C+ CGVC   CP  AI+  +E G
Sbjct: 563 ETCVGCKF--CINFFNCPGLVFDESSKKAYVDERFCVKCGVCVNVCPHGAIQVISEEG 618


>gi|283853443|ref|ZP_06370687.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio sp. FW1012B]
 gi|283571163|gb|EFC19179.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio sp. FW1012B]
          Length = 776

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFY----EGENF-LAIHPDECIDCGVCEPECP 51
            C  C    C  +CP         EG+ F +   P++CI CG C   CP
Sbjct: 717 ACRDCGL--CETICPTGAISRRQGEGKEFEMVSDPEKCIGCGFCGNACP 763



 Score = 36.7 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 39  ECIDCGVCEPECPVDAI 55
            C DCG+CE  CP  AI
Sbjct: 717 ACRDCGLCETICPTGAI 733


>gi|213425327|ref|ZP_03358077.1| putative polyferredoxin [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
          Length = 281

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  VTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          VT+ C+  +        C +VCP   F   +  ++I    CI CG C   CPVDAI
Sbjct: 12 VTQACVRRRFRFSSCRACTDVCPAQVFSLAQGQVSIDTTRCIACGDCLFVCPVDAI 67



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 191 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 246



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 187 EISPQECRMCGACWRSCPENVIQFDDD 213


>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
 gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
          Length = 589

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C  T C   CPV C       +  I   +CI CG C+  C  +A+  +
Sbjct: 539 EKCVGC--TLCARKCPVSCISGRTKQVHKIDQSKCIKCGACQNVCKFNAVIKE 589



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I+P++C+ C +C  +CPV  I
Sbjct: 533 QYKINPEKCVGCTLCARKCPVSCI 556


>gi|167770888|ref|ZP_02442941.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM
          17241]
 gi|167666928|gb|EDS11058.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM
          17241]
          Length = 437

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C   +CV+ CP +          I  + CIDCG C   CP  A
Sbjct: 15 DKCHGC--INCVKRCPTEAIRVRGGKAKIIKERCIDCGECIRVCPHHA 60


>gi|220917060|ref|YP_002492364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954914|gb|ACL65298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 300

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C   CPV    +     +  +P+ C+ C  C   CP D  K +
Sbjct: 104 CMHCLAPGCASACPVKAMSKSPEGPVVYNPNRCMGCRYCMIACPFDVPKYE 154


>gi|150007436|ref|YP_001302179.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
          distasonis ATCC 8503]
 gi|149935860|gb|ABR42557.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
          distasonis ATCC 8503]
          Length = 301

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV+VCP       E  +      C  CG C   CP  A++
Sbjct: 52 CIGCG--ACVDVCPTGALTLTEAGIVTDRSLCRTCGRCAEVCPTLAME 97



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C               L     +CI CG C   CP  A
Sbjct: 26 CPLACVWCHNPEGISPRAEKLYTRK-KCIGCGACVDVCPTGA 66


>gi|146303119|ref|YP_001190435.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Metallosphaera sedula DSM 5348]
 gi|145701369|gb|ABP94511.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Metallosphaera sedula DSM 5348]
          Length = 87

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V  E C  C    CV+VCP   +    + + +H + C++CG     CP  AI      G
Sbjct: 22 VNLEVCRTCAEKPCVKVCPAGTYERSGDVIEVHYERCLECGAALVACPFGAISFKFPEG 80


>gi|157370480|ref|YP_001478469.1| electron transport complex protein RnfB [Serratia proteamaculans
           568]
 gi|166991045|sp|A8GE01|RNFB_SERP5 RecName: Full=Electron transport complex protein rnfB
 gi|157322244|gb|ABV41341.1| electron transport complex, RnfABCDGE type, B subunit [Serratia
           proteamaculans 568]
          Length = 190

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 AYIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIE 161


>gi|23014678|ref|ZP_00054482.1| COG1140: Nitrate reductase beta subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 288

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + +   C  C    C++ CP    Y+ E+ +  I  D+C     C   CP D I  ++
Sbjct: 102 FYLARPCNHCTDPACLKACPTRSIYKNEDGIVLIDQDKCEGFQYCVRACPYDKIYYNS 159


>gi|325959023|ref|YP_004290489.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330455|gb|ADZ09517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 342

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 3   YVVTE-NCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPV-DAIK 56
           +V+ +  CI CK   C++ C V D  +E +N + I   +CI CG C   CPV  AIK
Sbjct: 125 FVIDDYLCIRCK--KCMKTCKVGDAIFEEDNKIVIDQSKCISCGECLKTCPVKGAIK 179



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 4   VVT---ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+T   + C  C    CV+ CP     Y  E  +  +PD+C+ C +C   CP  AI
Sbjct: 258 VITWDKDKCTNC--RLCVKECPSGAIKYTSEEGVVRNPDKCLRCSICYQTCPFGAI 311



 Score = 40.9 bits (95), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 19/69 (27%)

Query: 9   CILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCEPECPV 52
           CI C    C EVCP D                     +    I    CI C  C   C V
Sbjct: 87  CIRCGF--CAEVCPTDPKTLTCGENHLIREDFTILPVDKKFVIDDYLCIRCKKCMKTCKV 144

Query: 53  -DAIKPDTE 60
            DAI  +  
Sbjct: 145 GDAIFEEDN 153



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 13/58 (22%)

Query: 7   ENCILCKHTDCVEVCP--------VDCFYEGENFL---AIHPDECIDCGVCEPECPVD 53
           E CI C    C   CP         D   E E+      I+   CI CG C   CP D
Sbjct: 45  EYCIACG--ACTAACPAPMAIKLVRDEDSEHEDGFTYPVINNRGCIRCGFCAEVCPTD 100



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPG 62
             D+C +C +C  ECP  AIK  +E G
Sbjct: 262 DKDKCTNCRLCVKECPSGAIKYTSEEG 288



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLEL 65
          +D      NF  +H + CI CG C   CP   AIK   +   E 
Sbjct: 30 MDAPDRFRNFPEVHKEYCIACGACTAACPAPMAIKLVRDEDSEH 73


>gi|332162382|ref|YP_004298959.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606461|emb|CBY27959.1| NADH-ubiquinone oxidoreductase chain I [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666612|gb|ADZ43256.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 180

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|315634427|ref|ZP_07889714.1| electron transport complex protein RnfB [Aggregatibacter segnis
           ATCC 33393]
 gi|315477017|gb|EFU67762.1| electron transport complex protein RnfB [Aggregatibacter segnis
           ATCC 33393]
          Length = 197

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I PD C  C +C   CP   I
Sbjct: 107 AFIDENMCIGC--TKCIQACPVDAIIGSNKLMHTIIPDLCTGCELCVEPCPTSCI 159



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAI 55
                  I  + CI C  C   CPVDAI
Sbjct: 102 PTPKVAFIDENMCIGCTKCIQACPVDAI 129


>gi|311900215|dbj|BAJ32623.1| putative iron-sulfur binding protein [Kitasatospora setae KM-6054]
          Length = 205

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP +      + +     P  CI C  C   CP    K D E  L+
Sbjct: 53  CMHCEDPVAPCAEVCPAEAILITADGVVQEADPTRCIGCANCVNACPFGVPKIDLEAKLQ 112


>gi|332654598|ref|ZP_08420341.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcaceae bacterium D16]
 gi|332516562|gb|EGJ46168.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcaceae bacterium D16]
          Length = 579

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  + CI CK   C+++ CP     EG     +    C+ CGVCE  CPV A
Sbjct: 524 VNKDKCIGCK--SCMKIGCPAISIKEG--KAWVDNTLCVGCGVCEQLCPVGA 571


>gi|294494819|ref|YP_003541312.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalophilus mahii DSM 5219]
 gi|292665818|gb|ADE35667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalophilus mahii DSM 5219]
          Length = 58

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + C+ C    CV+ CP +      EN   +  +EC+DCGVC   CP +AI  +
Sbjct: 8  DECVGCG--ACVDECPSEAISMNDENIAVVDAEECVDCGVCVDVCPTEAITME 58



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTE 60
           I+ DEC+ CG C  ECP +AI  + E
Sbjct: 4  VINVDECVGCGACVDECPSEAISMNDE 30


>gi|293376708|ref|ZP_06622931.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|292644665|gb|EFF62752.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
          Length = 424

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          ++CI C  T C+ VCP +        + +  ++C++CG C   C V A
Sbjct: 13 DDCIGC--TRCMRVCPTEAIRIVNGKVKLIEEKCVNCGACFTTCHVHA 58



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I+ D+CI C  C   CP +AI+
Sbjct: 10 INFDDCIGCTRCMRVCPTEAIR 31


>gi|293406384|ref|ZP_06650310.1| oxidoreductase [Escherichia coli FVEC1412]
 gi|298382120|ref|ZP_06991717.1| oxidoreductase [Escherichia coli FVEC1302]
 gi|291426390|gb|EFE99422.1| oxidoreductase [Escherichia coli FVEC1412]
 gi|298277260|gb|EFI18776.1| oxidoreductase [Escherichia coli FVEC1302]
          Length = 163

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|284162170|ref|YP_003400793.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Archaeoglobus profundus DSM 5631]
 gi|284012167|gb|ADB58120.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Archaeoglobus profundus DSM 5631]
          Length = 655

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            YV  E C  C    C+ +CP       E   A I    C+ CGVC   CP  AIK    
Sbjct: 584 AYVDEEKCSGCG--ICIPLCPFQAIEIDERKRAKIDELLCMGCGVCASSCPSRAIKHRLF 641

Query: 61  PGLELWLKI 69
               +  +I
Sbjct: 642 ESETIRAEI 650



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
                +  ++C  CG+C P CP  AI+ D     +
Sbjct: 581 PTTAYVDEEKCSGCGICIPLCPFQAIEIDERKRAK 615


>gi|281354947|ref|ZP_06241441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
 gi|281317827|gb|EFB01847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
          Length = 56

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V T+ C  C+   CV  CPV      +    ++  +CI+CG C  ECP +AI
Sbjct: 5  VNTDACSGCE--TCVGSCPVSAISMADGKAVVNEADCIECGACVGECPCEAI 54


>gi|269104124|ref|ZP_06156820.1| electron transport protein hydN [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160764|gb|EEZ39261.1| electron transport protein hydN [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 181

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +V T   C  C    C +VCP +     + F+ +    CI C  C   CP  A
Sbjct: 50  AHVTTPVMCRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGA 103


>gi|218779495|ref|YP_002430813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760879|gb|ACL03345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 361

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++ C  C+   C++ CP      G++ +  +  D C  C  C   CPV+AI   ++PG 
Sbjct: 284 SDLCTACE--TCIDRCPPQALSMGDDDVPEVDLDLCFGCAACATGCPVEAISMVSKPGF 340


>gi|83590255|ref|YP_430264.1| cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC
           39073]
 gi|83573169|gb|ABC19721.1| Cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC
           39073]
          Length = 287

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C+EVC  +   E    L ++P  C  CG C+  CP  AI  +       ++
Sbjct: 68  CTGCG--RCLEVCRYEAIKE----LRVNPVFCEGCGACKLACPSGAITMEPNLAGYWYI 120



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKP 57
          G N   I    C  CG C   C  +AIK 
Sbjct: 57 GSNKAVIDAGICTGCGRCLEVCRYEAIKE 85


>gi|125776379|ref|XP_001359257.1| GA17794 [Drosophila pseudoobscura pseudoobscura]
 gi|195152209|ref|XP_002017029.1| GL21733 [Drosophila persimilis]
 gi|54639000|gb|EAL28402.1| GA17794 [Drosophila pseudoobscura pseudoobscura]
 gi|194112086|gb|EDW34129.1| GL21733 [Drosophila persimilis]
          Length = 217

 Score = 51.7 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEERAD 142



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|326381404|ref|ZP_08203098.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326199651|gb|EGD56831.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 336

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP       E   + +  D C  CG C   CP   ++
Sbjct: 132 SDVCKHCTHAGCLDVCPTGAMMRTEFGTVVVQADICNGCGTCVAGCPFGVVE 183


>gi|317489693|ref|ZP_07948197.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830228|ref|ZP_08163685.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316911287|gb|EFV32892.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487695|gb|EGC90133.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 204

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C    C E CP     +  +   ++I  ++CI CG C   CP +A K D 
Sbjct: 60  SYPLSMSCNHCDSPVCFEKCPQSAIIKDADTGLMSIDEEKCIGCGTCAIVCPYNAPKVDE 119

Query: 60  E 60
           E
Sbjct: 120 E 120


>gi|237808209|ref|YP_002892649.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
 gi|259494048|sp|C4LEP6|RNFB_TOLAT RecName: Full=Electron transport complex protein rnfB
 gi|237500470|gb|ACQ93063.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
          Length = 185

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK---- 56
            ++    CI C  T C++ CPVD        +  I   EC  C +C   CP + I+    
Sbjct: 108 AFIHENLCIGC--TKCIQACPVDAIIGAPKLMHTILRSECTGCDLCVDPCPTNCIEMIEL 165

Query: 57  PDTEPGLELWLK 68
           P T    +  ++
Sbjct: 166 PATPDRWKWDVE 177


>gi|169335113|ref|ZP_02862306.1| hypothetical protein ANASTE_01520 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257851|gb|EDS71817.1| hypothetical protein ANASTE_01520 [Anaerofustis stercorihominis DSM
           17244]
          Length = 273

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   C  CK   C EVCP+    + +         CI CG C  +CP++A   D E  L 
Sbjct: 200 VNHRCNDCKL--CAEVCPMGSIDKDDIRKY--NGICIKCGACIKKCPMNARYYDDEGYLY 255

Query: 65  LWLKINSEYATQ 76
              ++   YA +
Sbjct: 256 HKKELEEMYARR 267


>gi|169633144|ref|YP_001706880.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          SDF]
 gi|169151936|emb|CAP00792.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii]
          Length = 87

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCD--MCLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKQD 62


>gi|163814469|ref|ZP_02205858.1| hypothetical protein COPEUT_00620 [Coprococcus eutactus ATCC 27759]
 gi|158450104|gb|EDP27099.1| hypothetical protein COPEUT_00620 [Coprococcus eutactus ATCC 27759]
          Length = 286

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +CI+C    CV+ C        +  + +  D+C  CG C   CP DA
Sbjct: 164 SCIMCGV--CVKACREGAITMADGKIILDTDKCNYCGRCAKACPTDA 208


>gi|157373490|ref|YP_001472090.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157315864|gb|ABV34962.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 211

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  D CI C  C   CP DA + D 
Sbjct: 63  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAADLCIGCESCARACPYDAPQIDK 122

Query: 60  E 60
           +
Sbjct: 123 D 123



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 13/62 (20%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC---------GVCEPECPVD 53
           +V  + CI C+   C   CP D     ++   +   +C  C           C   CP+ 
Sbjct: 97  HVAADLCIGCE--SCARACPYDAPQIDKDRKVM--TKCDGCYERLAEGKQPSCVESCPMR 152

Query: 54  AI 55
           AI
Sbjct: 153 AI 154


>gi|78062849|ref|YP_372757.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
 gi|77970734|gb|ABB12113.1| 4Fe-4S ferredoxin [Burkholderia sp. 383]
          Length = 248

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|45359026|ref|NP_988583.1| polyferredoxin [Methanococcus maripaludis S2]
 gi|45047901|emb|CAF31019.1| polyferredoxin [Methanococcus maripaludis S2]
          Length = 393

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGV 45
           M      +CI C   +CVE CP +    G                  L I  + C+ CG 
Sbjct: 76  MPVFDAGSCINCG--NCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGT 133

Query: 46  CEPECPVDAI 55
           CE  CPVDAI
Sbjct: 134 CENACPVDAI 143



 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD-AIKPDTEPGLE 64
           E C+ C    C   CPVD        L  I  + C+ C  C   CPV+ AI   +EP L 
Sbjct: 126 EVCVSCG--TCENACPVDAISHNNTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPELS 183

Query: 65  LWLKI 69
             ++I
Sbjct: 184 EKIEI 188



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPV-DCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+V E  CI C    C   C V +     +  N   I+P+ C+ CG+C+  CPVDAI
Sbjct: 276 YIVDEEKCIGC--RICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 44.0 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C  + C E CP D           +         CI+CG C   CP + ++
Sbjct: 47  EKCISC--SACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLE 100



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V   CI C   +CV+VCP     E           CI  G C   CP  AI+     
Sbjct: 216 IVPSLCIGCG--NCVDVCPGSIDLERLKVT-----SCIKSGKCLEVCPTTAIRIGVPE 266



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          P++CI C  C+  CP DAI  +     + 
Sbjct: 46 PEKCISCSACKESCPSDAISMEFNEEFKK 74



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG---------ENFLAIHPDECIDCGVCEPECPV-DAI 55
           +CI  K   C+EVCP      G              +  ++CI C +C   C V +AI
Sbjct: 244 SCI--KSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSCNVPEAI 299


>gi|328952636|ref|YP_004369970.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452960|gb|AEB08789.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 780

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 5   VTENCILCKHTDCVEVCPVD----------CFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V   C LC    C  VCPV             +       I  ++C  CG C   CP +A
Sbjct: 242 VGATCNLCGQ--CAAVCPVQINDHAAIYLPSPHAFPTGYVIDSEQCTRCGACLEVCPQEA 299

Query: 55  IKPDTEPGLELWL 67
           I  ++ P L  + 
Sbjct: 300 ITLESGPTLYTFT 312



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  CK   C + CP         EGE    +    C  CGVC   CP +A+
Sbjct: 569 EKCTGCK--RCFQQCPFQAIELYDREGETKARVIVAACKGCGVCAGACPAEAV 619



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            I P++C  C  C  +CP  AI+     G 
Sbjct: 565 EIDPEKCTGCKRCFQQCPFQAIELYDREGE 594


>gi|325845197|ref|ZP_08168505.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
 gi|325488793|gb|EGC91194.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
          Length = 424

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          ++CI C  T C+ VCP +        + +  ++C++CG C   C V A
Sbjct: 13 DDCIGC--TRCMRVCPTEAIRIVNGKVKLIEEKCVNCGACFTTCHVHA 58



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I+ D+CI C  C   CP +AI+
Sbjct: 10 INFDDCIGCTRCMRVCPTEAIR 31


>gi|294789158|ref|ZP_06754397.1| ferredoxin [Simonsiella muelleri ATCC 29453]
 gi|294482899|gb|EFG30587.1| ferredoxin [Simonsiella muelleri ATCC 29453]
          Length = 83

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D       
Sbjct: 59 ILIDETHPETQ 69


>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
 gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
          Length = 597

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C   CPV C   G+      I  + CI CG C  +CP  AI
Sbjct: 547 DLCKRCGL--CARNCPVHCI-PGDRASGYTIDTERCIRCGTCFEKCPFGAI 594



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 11  LCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             K   C   VC      E     +I  D C  CG+C   CPV  I  D
Sbjct: 525 HVKDKKCPAGVC--SALIE----YSIDQDLCKRCGLCARNCPVHCIPGD 567


>gi|284162651|ref|YP_003401274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|294862439|sp|P84626|HDLA_ARCPA RecName: Full=Heterodisulfide reductase subunit A-like protein
 gi|284012648|gb|ADB58601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 701

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    CV +CP       +        I+P  C  CGVC   CP  AIK
Sbjct: 625 EKCSGCG--ICVPLCPYGAITMTKYNESMRAEINPALCKGCGVCAAACPSKAIK 676



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 26/92 (28%), Gaps = 41/92 (44%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEG---------------ENFLAIHPDECI 41
           T+V  + C  C    C +VCP        F EG                    I  D CI
Sbjct: 241 TWVDWDLCTGCG--ACTDVCPPKARVPDEFNEGLSKRGAIYIQFPQAVPKKAVIDIDACI 298

Query: 42  DCGV-------------------CEPECPVDA 54
           +CG                    CE  CP  A
Sbjct: 299 ECGGRKFGTEPRKTKDGKPILAPCEKVCPTGA 330



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKES 86
            +  ++C  CG+C P CP  AI   T+    +  +IN               S
Sbjct: 621 EVDKEKCSGCGICVPLCPYGAITM-TKYNESMRAEINPALCKGCGVCAAACPS 672


>gi|224368544|ref|YP_002602707.1| HdrA3' [Desulfobacterium autotrophicum HRM2]
 gi|223691260|gb|ACN14543.1| HdrA3' [Desulfobacterium autotrophicum HRM2]
          Length = 608

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             V  + C  C   +CV  CP +        G     ++P  C  CG C   CP ++I+
Sbjct: 508 ARVNADRCSGCG--NCVAACPFEACRLEPGNGRYHCRVNPFRCTGCGTCVAVCPNNSIQ 564


>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040538|gb|ACT57334.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 163

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 19/79 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            ++G        I   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118

Query: 56  ------KPDTEPGLELWLK 68
                 +  TE   EL+  
Sbjct: 119 VEGPNFEFATETRQELYYD 137


>gi|154148996|ref|YP_001406324.1| ferredoxin [Campylobacter hominis ATCC BAA-381]
 gi|153805005|gb|ABS52012.1| ferredoxin [Campylobacter hominis ATCC BAA-381]
          Length = 82

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C + CPV   YE E    I PD C +C        C  ECPV+ 
Sbjct: 1  MSLMITKDCICCD--ACKDECPVGAIYEDEPIYVIDPDLCCECVNDYSEPACIVECPVEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|167039598|ref|YP_001662583.1| thiamine pyrophosphate binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|256751499|ref|ZP_05492376.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300915152|ref|ZP_07132467.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter sp. X561]
 gi|307725076|ref|YP_003904827.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermoanaerobacter sp. X513]
 gi|166853838|gb|ABY92247.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Thermoanaerobacter sp. X514]
 gi|256749583|gb|EEU62610.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300888876|gb|EFK84023.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter sp. X561]
 gi|307582137|gb|ADN55536.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter sp. X513]
          Length = 577

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C+ + CP     + +   +I PD+C  C VC   CP DAI+
Sbjct: 528 DKCKKCGL--CLRIGCP--AISKKDGIFSIDPDQCTGCTVCMQVCPFDAIE 574


>gi|148264461|ref|YP_001231167.1| electron transfer flavoprotein, alpha subunit [Geobacter
           uraniireducens Rf4]
 gi|146397961|gb|ABQ26594.1| electron transfer flavoprotein, alpha subunit [Geobacter
           uraniireducens Rf4]
          Length = 441

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +   CI C    C   CPVD      +    I   +CI C  C   CP  A++    P  
Sbjct: 17  IEGKCIACGAR-CQSSCPVDGIEMNAQGEPEIELSKCIGCVKCVKACPGKALEIFYTPEE 75

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFS 105
              L+I +  A Q         +LP     +G KQ+ E   S
Sbjct: 76  ---LEILAALAAQ--------GNLPDEEVDEGEKQRRELLAS 106


>gi|319779206|ref|YP_004130119.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis
           MCE9]
 gi|317109230|gb|ADU91976.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis
           MCE9]
          Length = 161

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        +E E+         I   +CI CG CE  CPV+AI
Sbjct: 60  ERCIACKL--CEAVCPAMAITIESHEREDGARKTSRYDIDLTKCIFCGFCEESCPVEAI 116



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++    +
Sbjct: 60 ERCIACKLCEAVCPAMAITIESHERED 86


>gi|294101675|ref|YP_003553533.1| Fe-S cluster domain protein [Aminobacterium colombiense DSM
          12261]
 gi|293616655|gb|ADE56809.1| Fe-S cluster domain protein [Aminobacterium colombiense DSM
          12261]
          Length = 432

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C   +C++ CP +        + I  D CIDCG C  +C   AI  + + 
Sbjct: 12 CRGC--ANCIKTCPTEAMRVLTGCVHIISDLCIDCGECIRKCKEKAIILNEDE 62


>gi|226487082|emb|CAX75406.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487084|emb|CAX75407.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487086|emb|CAX75408.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487088|emb|CAX75409.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
          Length = 206

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 105 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 105 ERCIACKLCEAICPAQAITIEAEPRAD 131



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 146 CIYCGF--CQEACPVDAIVEGPNFEY 169


>gi|218701594|ref|YP_002409223.1| putative oxidoreductase [Escherichia coli IAI39]
 gi|218371580|emb|CAR19419.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli IAI39]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|117618050|ref|YP_856311.1| NADH dehydrogenase subunit I [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|156632700|sp|A0KJ60|NUOI_AERHH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117559457|gb|ABK36405.1| NADH-quinone oxidoreductase chain i [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKSEREDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|83858406|ref|ZP_00951928.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633]
 gi|83853229|gb|EAP91081.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 117



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 61 ERCIACKLCEAICPAQAITIEAEPRAD 87



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C +  C E CPVD   EG NF
Sbjct: 102 CIYCGY--CQEACPVDAIVEGPNF 123


>gi|194337328|ref|YP_002019122.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309805|gb|ACF44505.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 258

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            +   C  C    CV  CP +  ++  + +       CI C  C   CP  A+  +    
Sbjct: 115 TIPSLCNHCAEPPCVRSCPTEAVFKRNDGIVAFDYHRCIGCRSCMASCPYGAVSFNWREP 174

Query: 63  LELWLKINSEYATQWPNITTKK 84
                 I+  Y T+   +  K 
Sbjct: 175 RPALKAISESYPTREMGVAEKC 196


>gi|303239438|ref|ZP_07325965.1| nitrite and sulphite reductase 4Fe-4S region [Acetivibrio
           cellulolyticus CD2]
 gi|302593001|gb|EFL62722.1| nitrite and sulphite reductase 4Fe-4S region [Acetivibrio
           cellulolyticus CD2]
          Length = 317

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++C  CK     + CP++     +  L I+ + C +CG C+ +C  DAI+ D++ G +++
Sbjct: 172 DSCNGCKKCSIEDTCPMNAAKVVDGILEINKEICNNCGRCDGKCHFDAIE-DSKVGYKIY 230

Query: 67  L 67
           +
Sbjct: 231 I 231


>gi|218782193|ref|YP_002433511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763577|gb|ACL06043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C+ C    CVE C        +    +  D C+ CG+C  +CP  AI  + +
Sbjct: 254 DKCLGCGQ--CVEACGFLAVKMKDGRPVVESDRCLGCGICVDKCPSGAIVLERD 305



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDT 59
            PD+C+ CG C   C   A+K   
Sbjct: 252 DPDKCLGCGQCVEACGFLAVKMKD 275


>gi|167910108|ref|ZP_02497199.1| ferredoxin [Burkholderia pseudomallei 112]
          Length = 170

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|157804166|ref|YP_001492715.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel]
 gi|226737413|sp|A8EZZ7|NUOI_RICCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157785429|gb|ABV73930.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel]
          Length = 159

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAIVIEAEALDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 114



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + E 
Sbjct: 58 ERCIACKLCEAICPAQAIVIEAEA 81



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|83746832|ref|ZP_00943879.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|207742236|ref|YP_002258628.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|300705255|ref|YP_003746858.1| 4fe-4S ferredoxin-type protein [Ralstonia solanacearum CFBP2957]
 gi|83726417|gb|EAP73548.1| Ferredoxin [Ralstonia solanacearum UW551]
 gi|206593624|emb|CAQ60551.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|299072919|emb|CBJ44275.1| 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum CFBP2957]
          Length = 82

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|146296316|ref|YP_001180087.1| hypothetical protein Csac_1294 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409892|gb|ABP66896.1| protein of unknown function DUF362 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 375

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C   +C   CP            +   +CI C  C   CP  AI
Sbjct: 317 ACIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAI 362



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
               + CI C  C   CP  AI+
Sbjct: 312 VFDRNACIGCAECFNACPAQAIE 334


>gi|15595559|ref|NP_249053.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa PAO1]
 gi|116054091|ref|YP_788534.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889103|ref|YP_002437967.1| ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|254237402|ref|ZP_04930725.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa C3719]
 gi|296386859|ref|ZP_06876358.1| ferredoxin [Pseudomonas aeruginosa PAb1]
 gi|313112022|ref|ZP_07797807.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa 39016]
 gi|9946213|gb|AAG03751.1|AE004474_3 ferredoxin (4Fe-4S) [Pseudomonas aeruginosa PAO1]
 gi|115589312|gb|ABJ15327.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169333|gb|EAZ54844.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa C3719]
 gi|218769326|emb|CAW25086.1| ferredoxin [4Fe-4S] [Pseudomonas aeruginosa LESB58]
 gi|310884309|gb|EFQ42903.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa 39016]
          Length = 83

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDT 59
          I  D 
Sbjct: 59 IPLDD 63


>gi|302337816|ref|YP_003803022.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
          DSM 11293]
 gi|301635001|gb|ADK80428.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
          DSM 11293]
          Length = 575

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  CPV      +    +  D C+ CG C   CPV A
Sbjct: 11 ACQDC--YKCVRECPVKAIEVKDGHAVVVQDLCLYCGHCVTVCPVGA 55



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 39 ECIDCGVCEPECPVDAIK 56
           C DC  C  ECPV AI+
Sbjct: 11 ACQDCYKCVRECPVKAIE 28


>gi|317050575|ref|YP_004111691.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945659|gb|ADU65135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurispirillum indicum S5]
          Length = 260

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV  CPV+    Y+ +N + +H +  CI CG+C+  CP      D +   +
Sbjct: 63  CNHCTDAPCVTACPVNPKAMYKKDNGITMHNEARCIGCGMCQSACPYTVASLDADKAAK 121


>gi|284007089|emb|CBA72363.1| anaerobic dimethyl sulfoxide reductase chain B [Arsenophonus
           nasoniae]
          Length = 208

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++  C  C    CV  CP    +   E+ L + + + C+ C  CE  CP  A + D  
Sbjct: 60  YYLSIACNHCDSPTCVAGCPTGAMHKRAEDGLVVVNQEICVGCRYCELRCPYGAPQFDVN 119

Query: 61  PGL 63
             L
Sbjct: 120 KKL 122


>gi|262402395|ref|ZP_06078956.1| NrfC protein [Vibrio sp. RC586]
 gi|262351177|gb|EEZ00310.1| NrfC protein [Vibrio sp. RC586]
          Length = 212

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDETTGIVDVHKERCVGCGYCIAACPYQ 129


>gi|262040646|ref|ZP_06013884.1| electron transporter HydN [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042010|gb|EEW43043.1| electron transporter HydN [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 161

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 16/47 (34%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C+   C  VCP        +   +    CI C  C   CP  A
Sbjct: 57  ACRQCEDAPCASVCPQGAIQRDNDVWWVDQRRCIGCKSCMVACPYSA 103


>gi|268590651|ref|ZP_06124872.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131]
 gi|291314044|gb|EFE54497.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131]
          Length = 328

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           + + C+ C   +CV VCPV    +      +      C  C  C   CP +
Sbjct: 106 IKKQCMHCVDPNCVSVCPVQALKKDPKTGIVHYDASVCTGCRYCMVACPFN 156


>gi|269865863|ref|XP_002652072.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220063206|gb|EED41983.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 284

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 4  VVTENCI--LCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C    C   +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 16 VNEELCKPDKC-AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|73669121|ref|YP_305136.1| flavoprotein [Methanosarcina barkeri str. Fusaro]
 gi|72396283|gb|AAZ70556.1| archaeal flavoprotein [Methanosarcina barkeri str. Fusaro]
          Length = 239

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           M Y +    C  C+     E CP     E   F   I   +C  CG+C+  CP  AIK
Sbjct: 144 MPYNIDRKQCRHCEDCPPRENCPHGAITEKNGFTDQIDLLKCKGCGICKELCPYKAIK 201


>gi|83312476|ref|YP_422740.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947317|dbj|BAE52181.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 231

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + V   C  C    CV+VCP        +  + +    CI C  C   CP  A
Sbjct: 88  HSVPVMCQHCAKPACVDVCPTGASMKRADGIVLVDRHICIGCRYCMMACPYKA 140


>gi|47215704|emb|CAG04788.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 212

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 111 ERCIACKL--CEAICPAQAITIEAETRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 167



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  + E
Sbjct: 111 ERCIACKLCEAICPAQAITIEAE 133



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   +G NF
Sbjct: 152 CIYCGF--CQEACPVDAIVQGPNF 173


>gi|219668269|ref|YP_002458704.1| rubrerythrin [Desulfitobacterium hafniense DCB-2]
 gi|219538529|gb|ACL20268.1| Rubrerythrin [Desulfitobacterium hafniense DCB-2]
          Length = 392

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID-CGVCEPECPVDAIK--PDTEPGL 63
          + C   K   C+ VCP            I PD+C+D C  C   CP  AI   P+  P  
Sbjct: 8  DLCT--KDCLCLYVCPTGA--TDTETGQIDPDKCLDGCRACVDACPSHAISFVPEVYPPQ 63

Query: 64 E 64
          +
Sbjct: 64 Q 64


>gi|218884037|ref|YP_002428419.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765653|gb|ACL11052.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus kamchatkensis 1221n]
          Length = 634

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 2   TYVV-TENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            YVV  E C  C    C+    CP       E    I  ++C  CG+C   C  DAI
Sbjct: 577 PYVVDAEKCTGC--RACIASTGCP--AIIMVEGKAYIIEEDCNGCGLCVRYCQYDAI 629


>gi|153868840|ref|ZP_01998577.1| truncated electron transport protein DsrO [Beggiatoa sp. PS]
 gi|152074583|gb|EDN71423.1| truncated electron transport protein DsrO [Beggiatoa sp. PS]
          Length = 153

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9  CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C+H  CV+VCP    F   +  + +    CI C  C   CP  A
Sbjct: 16 CQHCEHPPCVDVCPTGASFKRVDGIVLVDKHICIGCRYCMMACPYKA 62


>gi|157371538|ref|YP_001479527.1| NADH dehydrogenase subunit I [Serratia proteamaculans 568]
 gi|270262807|ref|ZP_06191078.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13]
 gi|157323302|gb|ABV42399.1| NADH-quinone oxidoreductase, chain I [Serratia proteamaculans 568]
 gi|270043491|gb|EFA16584.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|14590719|ref|NP_142789.1| putative ATPase RIL [Pyrococcus horikoshii OT3]
 gi|3257270|dbj|BAA29953.1| 590aa long hypothetical transport protein [Pyrococcus horikoshii
          OT3]
          Length = 590

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 7  ENCI--LCKHTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          + C    C H  C  VCPV+          E  N   I    C  CG+C  +CP  AI  
Sbjct: 9  DKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNRPIIQEASCTGCGICVHKCPFKAISI 68

Query: 58 DTEPGL 63
             P  
Sbjct: 69 VNLPEQ 74


>gi|323182731|gb|EFZ68133.1| iron-sulfur protein [Escherichia coli 1357]
          Length = 134

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 34 ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 82


>gi|303243536|ref|ZP_07329878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486097|gb|EFL49019.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 386

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +NC+ C    CV  CPV+     +N   I   +CI C +C   CP +AI
Sbjct: 128 VMDNCVGCGV--CVPECPVEAITIEDNKAVIDKTKCIYCSICGQTCPWNAI 176



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDE-------CIDCGVCEPECPVDAIK 56
           C+LC    CV+VCP++        E        PDE       C+ CGVC PECPV+AI 
Sbjct: 91  CVLC--QKCVDVCPIEIISIPGLVEKPKKQITIPDEPIAVMDNCVGCGVCVPECPVEAIT 148

Query: 57  PDTE 60
            +  
Sbjct: 149 IEDN 152



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          C LC    CVEVCP     E +  +  +P +C+ CG C   CP 
Sbjct: 34 CTLCMQ--CVEVCPTGALSEIDGKIDYNPVKCMKCGKCAEACPT 75



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI+C    C   CP      G         N +  +P  C  CG C   CP+  ++ D  
Sbjct: 296 CIVCG--ACTVACPTGALKMGTINHNGKDYNRIEFNPSLCDKCGKCVEVCPMKVLEIDEN 353

Query: 61  PGL 63
              
Sbjct: 354 DEH 356



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD 53
           CI C    C E+CP +    +  N + + P  C  C +C   CPV+
Sbjct: 200 CIGC--FKCAEICPGNMIKVDKNNLIVMPPKACPACSLCVNVCPVN 243



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +C EVCP       E    +    CI CG C   CP  A+K
Sbjct: 273 KECAEVCPTRAIKVDEKSKTV--KMCIVCGACTVACPTGALK 312


>gi|297518377|ref|ZP_06936763.1| formate-dependent nitrite reductase; Fe-S centers [Escherichia
          coli OP50]
          Length = 173

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 41 SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 87


>gi|294339322|emb|CAZ87678.1| Ferredoxin [Thiomonas sp. 3As]
          Length = 87

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T++CI C    C   CP +  + G     I+PD C +C        C   CPV+ 
Sbjct: 1  MALWITDDCINCDV--CEPECPNEAIFMGPEIYEINPDRCTECVGHFDTPQCVQICPVNC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|291614173|ref|YP_003524330.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584285|gb|ADE11943.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 243

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP  A + D + 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKEDGIVLVDYDKCIGCKYCTWACPYGAREIDEKQ 127


>gi|227824723|ref|ZP_03989555.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905222|gb|EEH91140.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 411

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C   +   C +VC  D  + G++ ++I  D+C+ C  C   C +DA+K
Sbjct: 52 CSEEEQGSCAQVCHWDALHPGKDGISIDNDKCVGCQACVDACKLDALK 99


>gi|170754957|ref|YP_001783189.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
 gi|169120169|gb|ACA44005.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
          Length = 449

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKH----TDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK     T C   CP D     +  N   I  ++C DCG C   CP  +I
Sbjct: 81  DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTEKCTDCGFCVEACPTGSI 135


>gi|171184831|ref|YP_001793750.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934043|gb|ACB39304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 221

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP +  Y+  + L  +    CI C  C   CP  A+  D +
Sbjct: 63  CQHCDKPYCVATCPTNALYKDRDGLVKLRESSCIGCKYCLAACPYGAVWWDEK 115


>gi|218780382|ref|YP_002431700.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761766|gb|ACL04232.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 302

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC  C    C   CP++     +    I  D C+ CG+C  +CP D I+
Sbjct: 234 NCGAC--RVCTTACPLEAISNTDGRAEIREDRCMGCGICAAQCPNDKIR 280


>gi|124027636|ref|YP_001012956.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
 gi|123978330|gb|ABM80611.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
          Length = 494

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    C + CP          EG   L +H D CI CG C   CP DAI
Sbjct: 344 VDQERCTLCG--ACAKECPTGALKLREEAEGSALLFLH-DRCIACGWCREVCPEDAI 397



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 32  FLAI-HPDECIDCGVCEPECPVDAIK--PDTEPGLELWL 67
            L I   + C  CG C  ECP  A+K   + E    L+L
Sbjct: 340 GLVIVDQERCTLCGACAKECPTGALKLREEAEGSALLFL 378


>gi|20808576|ref|NP_623747.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479652|ref|ZP_05092953.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Carboxydibrachium pacificum DSM 12653]
 gi|20517204|gb|AAM25351.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034406|gb|EEB75179.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Carboxydibrachium pacificum DSM 12653]
          Length = 583

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    C+ + CP     + +   +I PD+C  C VC+  CP DAI+
Sbjct: 528 EKCKKCG--MCLRIGCP--AISKKDGIFSIDPDQCTGCTVCQQVCPFDAIE 574


>gi|50554865|ref|XP_504841.1| YALI0F00924p [Yarrowia lipolytica]
 gi|6689658|emb|CAB65524.1| subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
 gi|49650711|emb|CAG77643.1| YALI0F00924p [Yarrowia lipolytica]
          Length = 229

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI 
Sbjct: 128 ERCIACKL--CEAICPALAITIDAEERIDGSRRTTKYDIDMTKCIYCGYCQESCPVDAIV 185

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
            +T          N EYAT+     +  K++ L +  K +
Sbjct: 186 -ETP---------NVEYATETREELLYNKEKLLANGDKWE 215


>gi|317492616|ref|ZP_07951043.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919366|gb|EFV40698.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|312967579|ref|ZP_07781794.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 2362-75]
 gi|312287776|gb|EFR15681.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 2362-75]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|300723697|ref|YP_003713004.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630221|emb|CBJ90872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Xenorhabdus nematophila ATCC 19061]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  ++   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHKDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|288817477|ref|YP_003431824.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6]
 gi|288786876|dbj|BAI68623.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6]
 gi|308751084|gb|ADO44567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 647

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            ++  E C  C+   C   CP +      +E +    ++  +C  CG+C   C V AI  
Sbjct: 294 AHIDFEKCTGCEQ--CYIDCPYEAITMKDFEDKKKAVLNESKCAGCGICVGSCSVQAIDI 351

Query: 58  DTEPGLE 64
            T P  E
Sbjct: 352 PTFPIEE 358


>gi|225166802|ref|YP_002650787.1| putative dihydroorotate dehydrogenase family protein [Clostridium
           botulinum]
 gi|253771334|ref|YP_003034159.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
 gi|225007466|dbj|BAH29562.1| putative dihydroorotate dehydrogenase family protein [Clostridium
           botulinum]
 gi|253721311|gb|ACT33604.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
          Length = 362

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+ CI C    C  VCP       +  + +   +C  CG+CE +CPVDAI
Sbjct: 307 VIDEDKCIKCGV--CERVCPYFALKL-KEKINVDTTKCFGCGLCESKCPVDAI 356



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
                +   I  D+CI CGVCE  CP  A+K
Sbjct: 299 IKFNPDNPVIDEDKCIKCGVCERVCPYFALK 329


>gi|39936007|ref|NP_948283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009]
 gi|192291662|ref|YP_001992267.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1]
 gi|81562357|sp|Q6N5N2|NUOI1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|39649861|emb|CAE28383.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris
           CGA009]
 gi|192285411|gb|ACF01792.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           TIE-1]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP             +G        I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 117


>gi|331270137|ref|YP_004396629.1| transcriptional regulator [Clostridium botulinum BKT015925]
 gi|329126687|gb|AEB76632.1| transcriptional regulator [Clostridium botulinum BKT015925]
          Length = 629

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 3  YVVTENCILCKHTDCVEVCPV-DC----FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          Y + ENC+ C    C+  CP+ D     F +G+N + ++ D+CI CG C   C  +A + 
Sbjct: 8  YTIEENCVGCNQ--CIRYCPIFDANTAYFSKGQNKVKVNIDKCIHCGKCIDVCEHEAREY 65

Query: 58 DTE 60
            +
Sbjct: 66 HDD 68


>gi|303230564|ref|ZP_07317317.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302514757|gb|EFL56746.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 271

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       EN        CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRCGL--CVADCPTGLLVMSENGPVTGKGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|262280053|ref|ZP_06057838.1| conserved hypothetical protein [Acinetobacter calcoaceticus
          RUH2202]
 gi|262260404|gb|EEY79137.1| conserved hypothetical protein [Acinetobacter calcoaceticus
          RUH2202]
          Length = 87

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIFMGEVIYEIHPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D E   
Sbjct: 59 IPKDPEHEE 67


>gi|326201720|ref|ZP_08191591.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988320|gb|EGD49145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y + +NC  CK   C+    CP   F +G   + I P  C  CG+C   CP +AI  +  
Sbjct: 541 YTIKDNCKNCK--KCITDIGCPAISFIDG--KVNIEPSLCYGCGLCTNVCPFNAIGGEEN 596

Query: 61  P 61
            
Sbjct: 597 E 597


>gi|225405642|ref|ZP_03760831.1| hypothetical protein CLOSTASPAR_04863 [Clostridium asparagiforme
          DSM 15981]
 gi|225042836|gb|EEG53082.1| hypothetical protein CLOSTASPAR_04863 [Clostridium asparagiforme
          DSM 15981]
          Length = 471

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C   +C++ CP +         +I+   CIDCG C   CP  A
Sbjct: 15 CKGC--INCIKRCPTEAIRVRGGKASINNKFCIDCGECIRVCPHHA 58


>gi|218706392|ref|YP_002413911.1| putative oxidoreductase [Escherichia coli UMN026]
 gi|300896220|ref|ZP_07114769.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300936168|ref|ZP_07151104.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|218433489|emb|CAR14392.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli UMN026]
 gi|300359954|gb|EFJ75824.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|300458625|gb|EFK22118.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|197122842|ref|YP_002134793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196172691|gb|ACG73664.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 326

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV+ CP    + E +  + I  D CI C  C   CP  A
Sbjct: 181 CQQCRNPPCVKACPTQATWKEQDGIVVIDYDWCIGCRCCMSACPYGA 227


>gi|152983310|ref|YP_001354824.1| ferredoxin [Janthinobacterium sp. Marseille]
 gi|151283387|gb|ABR91797.1| ferredoxin [Janthinobacterium sp. Marseille]
          Length = 87

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y G+    I P +C +C        C+  CPV  
Sbjct: 1  MALLITDECINCDV--CEPECPNDAIYMGQEIYEIDPTKCTECVGHFDEPQCQQVCPVSC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P      E   ++ ++Y
Sbjct: 59 I-PFNPEWRESKEELQAKY 76


>gi|220928814|ref|YP_002505723.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|219999142|gb|ACL75743.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium cellulolyticum H10]
          Length = 598

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +  NC  CK   C+    CP     EG   + I P  C  CG+C   CP DAI  +  
Sbjct: 542 YSIKANCKDCK--KCITEIGCPAISVIEG--KVRIEPSLCYGCGLCTNVCPFDAIGGEEN 597

Query: 61  P 61
            
Sbjct: 598 E 598


>gi|71083590|ref|YP_266309.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761989|ref|ZP_01263954.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|115502537|sp|Q4FM83|NUOI_PELUB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71062703|gb|AAZ21706.1| NADH Dehydrogenase I Chain I [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717791|gb|EAS84441.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 161

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+CE  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIESSERADGSRKTTRYDIDMMKCIYCGLCEESCPVDAI 116



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++    +
Sbjct: 60 ERCIACKLCEAVCPAQAITIESSERAD 86


>gi|332299288|ref|YP_004441209.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Porphyromonas asaccharolytica DSM 20707]
 gi|332176351|gb|AEE12041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Porphyromonas asaccharolytica DSM 20707]
          Length = 393

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          + C  C+   C ++CP  C       EG ++  +  D CI+C  CE  CP 
Sbjct: 8  QRCCGCE--ACRQICPKGCIRLERDEEGFDYPIVDTDRCIECHKCERVCPF 56


>gi|323698473|ref|ZP_08110385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio sp. ND132]
 gi|323458405|gb|EGB14270.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfovibrio desulfuricans ND132]
          Length = 95

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          T+ C+ C    CV+VCP       E    I   D C++CG C   CPV+AI
Sbjct: 17 TDKCVGCG--SCVDVCPHRILAVRERKTTILDFDACMECGACARNCPVEAI 65


>gi|317153808|ref|YP_004121856.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944059|gb|ADU63110.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 275

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C H  CV VCPV   D   EG     I+P  CI C  C   CP  A
Sbjct: 89  PCMQCGHPACVPVCPVVATDKNEEGGIVSQIYP-RCIGCRYCMAACPYHA 137


>gi|258514877|ref|YP_003191099.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778582|gb|ACV62476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 272

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           NC  CK   C  VCP+    + E+   ++   CI C  C   CP +A   D +  L    
Sbjct: 201 NCTDCKV--CASVCPMGSI-DYEDVSKLN-GICIKCCACIKSCPTEAKYFDDKDYLRHKY 256

Query: 68  KINSEYATQ 76
           ++  E+A++
Sbjct: 257 ELEVEFASR 265


>gi|257790266|ref|YP_003180872.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474163|gb|ACV54483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 219

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C   +CV+VCP    ++  +    I   +CI C  C   CP +    + E 
Sbjct: 65  CQHCADPECVKVCPTGASHKAADGTVQIDKSKCIGCQFCAMSCPYNVRYLNEEE 118


>gi|167918137|ref|ZP_02505228.1| ferredoxin [Burkholderia pseudomallei BCC215]
          Length = 176

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|154148497|ref|YP_001407281.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           hominis ATCC BAA-381]
 gi|153804506|gb|ABS51513.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter hominis ATCC
           BAA-381]
          Length = 188

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C++C+++ CVEVCP    ++ EN +  I+ + C+ C  C   CP DA   D
Sbjct: 57  SCVMCENSPCVEVCPTGASFKTENGITLINHNLCVSCKYCILACPYDARFVD 108


>gi|157164593|ref|YP_001467233.1| anaerobic dimethyl sulfoxide reductase chain B [Campylobacter
           concisus 13826]
 gi|112801850|gb|EAT99194.1| anaeroBic dimethyl sulfoxide reductase chain b (dmso reductase
           iron-sulfur subunit) [Campylobacter concisus 13826]
          Length = 187

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++C++C+   CVEVCP    F   +    +    C+ C  C   CP DA
Sbjct: 56  QSCVMCEDAPCVEVCPTGASFKTADGVTLLDHRICVSCKYCILACPYDA 104


>gi|332528159|ref|ZP_08404190.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332112730|gb|EGJ12523.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 541

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC+ C   +C  VCP +   +      A+  D C  CG+C  ECP  AI
Sbjct: 488 NCLQCD--NCYGVCPDNAVKKLAPGRYAVDYDYCKGCGLCAVECPCGAI 534


>gi|323197142|gb|EFZ82282.1| cytochrome c nitrite reductase, Fe-S protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
          Length = 136

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 4  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 50


>gi|256078647|ref|XP_002575606.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238660848|emb|CAZ31839.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma
           mansoni]
          Length = 206

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 105 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 105 ERCIACKLCEAICPAQAITIEAEPRAD 131



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 146 CIYCGF--CQEACPVDAIVEGPNFEY 169


>gi|157145889|ref|YP_001453208.1| electron transport complex protein RnfB [Citrobacter koseri ATCC
           BAA-895]
 gi|166225081|sp|A8AH09|RNFB_CITK8 RecName: Full=Electron transport complex protein rnfB
 gi|157083094|gb|ABV12772.1| hypothetical protein CKO_01640 [Citrobacter koseri ATCC BAA-895]
          Length = 192

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-- 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+  
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCIELR 165

Query: 57  --PDTEPGLEL 65
              +T    + 
Sbjct: 166 PVAETPDSWKW 176


>gi|119476464|ref|ZP_01616815.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
 gi|119450328|gb|EAW31563.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
          Length = 201

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 114 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCI 166



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +  EN      I  DECI C  C   CPVDAI
Sbjct: 96  VEAVPLDAEHGEENVKTVAYIREDECIGCTKCIQACPVDAI 136


>gi|52549176|gb|AAU83025.1| heterodisulfide reductase catalytic chain A [uncultured archaeon
           GZfos26D6]
          Length = 287

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V    C+ C    C  +CP D        + ++   C  CG C   CP  AI      
Sbjct: 214 AFVNEGICVGCG--TCEAICPFDALSLEAGVMHVNEVVCKGCGSCGSACPSGAITMRHFK 271

Query: 62  GLELWLKINS 71
             +++ +I +
Sbjct: 272 DEQIFAQIEA 281


>gi|91773868|ref|YP_566560.1| hypothetical protein Mbur_1929 [Methanococcoides burtonii DSM 6242]
 gi|91712883|gb|ABE52810.1| Phosphoadenosine phosphosulfate reductase fused to RNA-binding PUA
           and 4Fe-4S binding domains [Methanococcoides burtonii
           DSM 6242]
          Length = 633

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    CV  CP +C    E+  AI   +CI CG C   CPV
Sbjct: 589 CMGCGV--CVGKCPKNCITI-EDGKAIISSKCIHCGACVEICPV 629


>gi|51246903|ref|YP_066787.1| electron transfer flavoprotein, alpha subunit [Desulfotalea
          psychrophila LSv54]
 gi|50877940|emb|CAG37780.1| probable electron transfer flavoprotein, alpha subunit
          [Desulfotalea psychrophila LSv54]
          Length = 436

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
          CI C    C   CPV C    +     I+  +CI C  C   CP +A++
Sbjct: 19 CISCGGR-CESSCPVACITMSDAGEPQINTAKCIGCKKCVKACPGEALE 66


>gi|34556490|ref|NP_906305.1| hypothetical protein WS0032 [Wolinella succinogenes DSM 1740]
 gi|34482204|emb|CAE09205.1| hypothetical protein WS0032 [Wolinella succinogenes]
          Length = 126

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN-------FLAIHPDECIDCG-----VCEP 48
          M  ++T++CI C    C+E CP       ++          + P++CI+C       C  
Sbjct: 1  MAVMITDSCINCD--SCIEECPATAIVSADDAPIAGFEHTYVKPEKCIECADSTVPKCAD 58

Query: 49 ECPVD-AIKPDTE 60
           CP + AI  D  
Sbjct: 59 ICPTEGAIVWDMP 71



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
             +  D CI+C  C  ECP  AI    +  +  +
Sbjct: 1  MAVMITDSCINCDSCIEECPATAIVSADDAPIAGF 35


>gi|325297885|ref|YP_004257802.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324317438|gb|ADY35329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 380

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 7   ENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C  CK   C+  C  D   F EG   ++I+ D C+ CG C   C  DAI    +  ++
Sbjct: 199 DACRGCK--RCMRECANDGLVFDEGRKKMSINQDNCVGCGRCIGACNFDAIGFAQDAAIK 256

Query: 65  LWLKINSEYAT 75
              ++N   A 
Sbjct: 257 ---ELNCRMAE 264


>gi|304398209|ref|ZP_07380083.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB]
 gi|308187597|ref|YP_003931728.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1]
 gi|304354075|gb|EFM18448.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB]
 gi|308058107|gb|ADO10279.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|294101124|ref|YP_003552982.1| electron transport complex, RnfABCDGE type, B subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293616104|gb|ADE56258.1| electron transport complex, RnfABCDGE type, B subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 266

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C ++CP       +N   I+PD C  C +C  +CP  AI
Sbjct: 217 CIGCGL--CAKLCPSQAITMKDNLPVINPDLCTGCKICAMKCPARAI 261



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 6   TENC-ILC-KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C   C     CV  C  D     +    +    C  CG C   CP D I
Sbjct: 136 TKACKNGCLGFGSCVTACAFDAISVEDGVAVVDESLCTGCGACVAACPRDVI 187


>gi|293395177|ref|ZP_06639463.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582]
 gi|291422354|gb|EFE95597.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEQKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|84685011|ref|ZP_01012910.1| benzoyl-CoA oxygenase, A subunit [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84666743|gb|EAQ13214.1| benzoyl-CoA oxygenase, A subunit [Rhodobacterales bacterium
          HTCC2654]
          Length = 397

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E CI C    C   CP++     ++ + +  ++C  C  C P CP  +I        + W
Sbjct: 13 EICIRC--YTCEMTCPIEAITHNDDNVVVDAEKCNFCMDCIPVCPTGSI--------DEW 62

Query: 67 LKINSEYA----TQWPNITTKKESLPSAA 91
            +N  Y+     +W  +  + +  PSA 
Sbjct: 63 RVVNEPYSLDEQFEWTELPEQGDVEPSAE 91



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP++AI  + +
Sbjct: 10 IDPEICIRCYTCEMTCPIEAITHNDD 35


>gi|292488197|ref|YP_003531079.1| electron transport complex protein RnfB [Erwinia amylovora
           CFBP1430]
 gi|292899403|ref|YP_003538772.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291199251|emb|CBJ46368.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291553626|emb|CBA20671.1| Electron transport complex protein rnfB [Erwinia amylovora
           CFBP1430]
 gi|312172334|emb|CBX80591.1| Electron transport complex protein rnfB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 191

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 NCIGC--TKCIQACPVDAIVGATRAMHTVLSDICTGCDLCVAPCPTDCIE 162



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 111 IDEANCIGCTKCIQACPVDAI 131


>gi|283833245|ref|ZP_06352986.1| electron transport complex, RnfABCDGE type, B subunit [Citrobacter
           youngae ATCC 29220]
 gi|291070881|gb|EFE08990.1| electron transport complex, RnfABCDGE type, B subunit [Citrobacter
           youngae ATCC 29220]
          Length = 192

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-- 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+  
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCIELR 165

Query: 57  --PDTEPGLEL 65
              +T    + 
Sbjct: 166 PVAETPDSWKW 176


>gi|281205874|gb|EFA80063.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 179

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 78  ERCIACKL--CEAICPAQAITIEAEPRKDGSRRTTRYDIDMTKCIYCGYCQEACPVDAIV 135

Query: 57  --PDTEPGLELWLKI 69
             P+ E   E  +++
Sbjct: 136 EGPNFEFTTESRIEL 150


>gi|255524028|ref|ZP_05390990.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|296186885|ref|ZP_06855286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255512315|gb|EET88593.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|296048599|gb|EFG88032.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 449

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTD-CVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+       C   CP +  +  +      I  D C DCG C   CP   I    E
Sbjct: 84  DCVNTSEKPLCQASCPFNAIFVDKESKSTYIDNDRCTDCGFCVEACPTGGILDKVE 139


>gi|213583592|ref|ZP_03365418.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 156

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C H  CV+VCP    F +  + +  ++PD C+ C  C   CP 
Sbjct: 90  SCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPY 136


>gi|330504281|ref|YP_004381150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina NK-01]
 gi|328918567|gb|AEB59398.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina NK-01]
          Length = 470

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP          L     ECI CG C   C
Sbjct: 269 DCIDC--TVCVQVCPTGIDIRDGLQL-----ECIGCGACVDAC 304


>gi|328869461|gb|EGG17839.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 213

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E  L          I   +CI CG C+  CPVDAI 
Sbjct: 112 ERCIACKL--CEAICPAQAITIEAEPRLDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 169

Query: 57  --PDTEPGLELWLKI 69
             P+ E   E  +++
Sbjct: 170 EGPNFEFTTESRIEL 184


>gi|325832581|ref|ZP_08165409.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325485986|gb|EGC88445.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 207

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           M Y +T  C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 58  MRY-ITVGCQHCENPACTKVCPVGATYKDPETGVVRQDYDKCIGCRMCMAACPYT 111


>gi|304382390|ref|ZP_07364890.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336452|gb|EFM02688.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 259

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
           V  E CI C    C  VCP+     G+    I  H D+CI C  C   CPV AI
Sbjct: 190 VNNERCIRCG--RCATVCPMQNITGGKGEKPIWHHTDDCISCFACYHGCPVHAI 241



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
            +    ++ + CI CG C   CP+  I
Sbjct: 184 TDRPFRVNNERCIRCGRCATVCPMQNI 210


>gi|238786132|ref|ZP_04630086.1| Protein nrfC [Yersinia bercovieri ATCC 43970]
 gi|238712960|gb|EEQ05018.1| Protein nrfC [Yersinia bercovieri ATCC 43970]
          Length = 212

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    Y       + ++PD C+ C  C   CP 
Sbjct: 80  SCQHCDKAPCVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPY 126


>gi|226195339|ref|ZP_03790928.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225932541|gb|EEH28539.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 189

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|121535425|ref|ZP_01667236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306024|gb|EAX46955.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 191

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           ++C++C ++ CV VCP    Y  ++ +  I   +C+ C  C   CP  A
Sbjct: 60  QSCVMCDNSPCVSVCPTGASYTNKDGVNLIDEKKCVGCKYCVTACPYQA 108


>gi|82777689|ref|YP_404038.1| NADH dehydrogenase subunit I [Shigella dysenteriae Sd197]
 gi|110287773|sp|Q32DQ8|NUOI_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81241837|gb|ABB62547.1| NADH dehydrogenase I chain I [Shigella dysenteriae Sd197]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKTETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|220931143|ref|YP_002508051.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
 gi|219992453|gb|ACL69056.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
          Length = 877

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPG 62
           + + C  C    CV  CPV           +  D CI CG C   C   A K  D +  
Sbjct: 7  TIKDRCHEC--YACVRNCPVKAVRVKNRQAEVISDRCIHCGNCVLVCSQGAKKVRDFKEI 64

Query: 63 LELWLKIN----SEYATQWPN 79
           + +L+ N    +  A  +P+
Sbjct: 65 AKQFLQDNDKIVAGLAPSFPS 85


>gi|89895803|ref|YP_519290.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670234|ref|YP_002460669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335251|dbj|BAE84846.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540494|gb|ACL22233.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 206

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPV 52
           NC  C +  CV+ CPV   +   E+ + I   D+CI C  C   CP 
Sbjct: 63  NCQHCANPACVKACPVGATYKREEDGIVIQDYDKCIGCRYCMVACPY 109


>gi|326405118|ref|YP_004285200.1| hypothetical protein ACMV_29710 [Acidiphilium multivorum AIU301]
 gi|325051980|dbj|BAJ82318.1| hypothetical protein ACMV_29710 [Acidiphilium multivorum AIU301]
          Length = 247

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C++  CV VCP    +   E+ +  ++ D CI C +C   CP  A + D   G
Sbjct: 83  SCLHCENPLCVTVCPTGASYKRAEDGIVLVNTDICIGCKLCSWACPYGAREFDEHDG 139


>gi|323484495|ref|ZP_08089861.1| hypothetical protein HMPREF9474_01612 [Clostridium symbiosum
          WAL-14163]
 gi|323692556|ref|ZP_08106789.1| Fe-S cluster domain-containing protein [Clostridium symbiosum
          WAL-14673]
 gi|323402273|gb|EGA94605.1| hypothetical protein HMPREF9474_01612 [Clostridium symbiosum
          WAL-14163]
 gi|323503422|gb|EGB19251.1| Fe-S cluster domain-containing protein [Clostridium symbiosum
          WAL-14673]
          Length = 470

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C   +C++ CP            I+   CIDCG C   CP  A
Sbjct: 13 ELCKGC--INCIKRCPTQAIRVRNRKAQINSKFCIDCGECIRVCPHHA 58


>gi|291528500|emb|CBK94086.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Eubacterium rectale M104/1]
          Length = 289

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  D+C +C  C   CP DA
Sbjct: 165 DDCIQCGV--CVKACREGALSMEDGRIVIDRDKCNNCARCVKSCPTDA 210



 Score = 34.0 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C++    D   +G   +    D+CI CGVC   C   A+  + 
Sbjct: 143 NCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186


>gi|88607532|ref|YP_505378.1| NADH dehydrogenase subunit I [Anaplasma phagocytophilum HZ]
 gi|115502516|sp|Q2GJS3|NUOI_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88598595|gb|ABD44065.1| NADH dehydrogenase I, I subunit [Anaplasma phagocytophilum HZ]
          Length = 164

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIEAEERSDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNFEY 127



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + E 
Sbjct: 63 ERCIACKLCEAICPAQAITIEAEE 86


>gi|91977347|ref|YP_570006.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5]
 gi|123748991|sp|Q135Y4|NUOI2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|91683803|gb|ABE40105.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB5]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|332798424|ref|YP_004459923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
 gi|332696159|gb|AEE90616.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
          Length = 504

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M  +  E C  C  + CV+ CP++          I+ D C++CG+C   C  +AIK
Sbjct: 1  MIVIDLEKCRGC--SLCVKNCPLEAIKVINKKAKIN-DNCVNCGICFRVCTFEAIK 53


>gi|323698251|ref|ZP_08110163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323458183|gb|EGB14048.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 267

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V ++C+ C    C E CPV      +++     ++CI C  C   CP +A
Sbjct: 191 VGDSCVQCG--TCAEHCPVGAIS-ADDYTKTDAEKCIKCCACIKVCPENA 237



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 8/38 (21%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           PVD    G        D C+ CG C   CPV AI  D 
Sbjct: 185 PVDFIAVG--------DSCVQCGTCAEHCPVGAISADD 214


>gi|295106716|emb|CBL04259.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
          pamelaeae 7-10-1-b]
          Length = 185

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 8  NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  C+ VCP    + + +  + I  ++CI C +C   CP +A
Sbjct: 44 ACQHCENPACLRVCPTGATYKDDKGRVEIDYEKCIGCRMCMAACPYNA 91


>gi|294496384|ref|YP_003542877.1| hypothetical protein Mmah_1737 [Methanohalophilus mahii DSM 5219]
 gi|292667383|gb|ADE37232.1| protein of unknown function DUF362 [Methanohalophilus mahii DSM
           5219]
          Length = 369

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + C  C    CV  CP +  Y       I    CI C  C   CP  A+K
Sbjct: 311 ADKCTACG--ACVRNCPAEAIYMDNGHAVIDAGICILCYCCRELCPAAAVK 359



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPD 58
            I  D+C  CG C   CP +AI  D
Sbjct: 308 EIDADKCTACGACVRNCPAEAIYMD 332


>gi|257468686|ref|ZP_05632780.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Fusobacterium ulcerans ATCC 49185]
 gi|317062941|ref|ZP_07927426.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688617|gb|EFS25452.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 56

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 3  YVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          YV+  + CI C    C   CPV      ++      D C+DCG C   CPV AI  +
Sbjct: 2  YVIDKDACIGCG--ACEGTCPVGAISSTDDGKYGISDSCVDCGACAGGCPVSAIAAE 56



 Score = 41.3 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             I  D CI CG CE  CPV AI    +
Sbjct: 1  MYVIDKDACIGCGACEGTCPVGAISSTDD 29


>gi|296135227|ref|YP_003642469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
          intermedia K12]
 gi|295795349|gb|ADG30139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
          intermedia K12]
          Length = 87

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T++CI C    C   CP +  + G     I+PD C +C        C   CPV+ 
Sbjct: 1  MALWITDDCINCDV--CEPECPNEAIFMGPEIYEINPDRCTECVGHFDTPQCVQICPVNC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|238762146|ref|ZP_04623118.1| Protein nrfC [Yersinia kristensenii ATCC 33638]
 gi|238699493|gb|EEP92238.1| Protein nrfC [Yersinia kristensenii ATCC 33638]
          Length = 212

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    Y       + + PD C+ C  C   CP 
Sbjct: 80  SCQHCDKAPCVDVCPTGASYRDKASGIVDVDPDLCVGCQYCIAACPY 126


>gi|182705280|sp|P60200|HDRA_METJA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
          Length = 657

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E     G                  I  D CI CG
Sbjct: 239 YVDENICTGCG--ACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTIDMDHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   AI+ D +P  
Sbjct: 297 LCEKACGPGAIRYDQKPEE 315



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECIDCGVCEPECPVDA 54
             V  + C  C    C ++CP +     E +  L   ++   C  CG C   CP  A
Sbjct: 576 AVVDEDVCGGC--QVCAKMCPYNAITYVEKDGHLVAQVNDVACKGCGSCAGACPSGA 630



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +  D C  C VC   CP +AI    + G 
Sbjct: 577 VVDEDVCGGCQVCAKMCPYNAITYVEKDGH 606


>gi|167737726|ref|ZP_02410500.1| ferredoxin [Burkholderia pseudomallei 14]
          Length = 173

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|159905364|ref|YP_001549026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886857|gb|ABX01794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 395

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT++C+ C    CV  CPVD     E+   I  D+CI C VC   CP +AI 
Sbjct: 128 VTKDCVACGV--CVPECPVDAISI-EDIAVIDTDKCIYCTVCSQTCPWNAIF 176



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C+   CVE CP     Y GE      P  C  CG+C   CPV+AI  + E
Sbjct: 194 VNEEECIGCE--KCVEACPGSMIEYNGEALGVKLPVACPACGLCVESCPVEAIGLEVE 249



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C    CVE CPV+               +  L    ++C  CG C  +CP  AIK 
Sbjct: 228 ACPACGL--CVESCPVEAIGLEVEYASAKPVTDEGLVWLEEKCAYCGPCALKCPTGAIKV 285

Query: 58  DTEPGLEL 65
               GLEL
Sbjct: 286 VNPKGLEL 293



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           T+ CI C  T C + CP +  +                 ++ +ECI C  C   CP   I
Sbjct: 157 TDKCIYC--TVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 214

Query: 56  KPDTEP 61
           + + E 
Sbjct: 215 EYNGEA 220



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C++C    C + CP +               CI C  C   CP  A
Sbjct: 9  DACLVCN--ACAKACPTEAIEIAPFK------TCIQCFSCANACPTGA 48


>gi|160892005|ref|ZP_02073008.1| hypothetical protein BACUNI_04464 [Bacteroides uniformis ATCC 8492]
 gi|156858483|gb|EDO51914.1| hypothetical protein BACUNI_04464 [Bacteroides uniformis ATCC 8492]
          Length = 315

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  CV+ CP     +G+    +  ++CI C  C   CP  A   DT 
Sbjct: 243 VDAERCTHCGY--CVKHCPAGAIIKGDECNTV-AEKCIKCCACVKGCPQKARTYDTP 296


>gi|145298716|ref|YP_001141557.1| NADH dehydrogenase subunit I [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|156632701|sp|A4SLN7|NUOI_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|142851488|gb|ABO89809.1| NADH dehydrogenase I, I subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAERDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|187477591|ref|YP_785615.1| ferredoxin [Bordetella avium 197N]
 gi|115422177|emb|CAJ48701.1| ferredoxin [Bordetella avium 197N]
          Length = 213

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD        +  +  D C  C +C   CPVD I  D  P    W 
Sbjct: 85  CIGC--TLCIRACPVDAIAGANKRMHTVLADLCSGCDLCVAPCPVDCI--DMVPAGRDWT 140

Query: 68  KINSEYATQ 76
             ++  A Q
Sbjct: 141 ASDASAARQ 149



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 80  IDEAHCIGCTLCIRACPVDAI 100


>gi|113971988|ref|YP_735781.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886672|gb|ABI40724.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 182

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           +C+ C +  C+  CP   +    + L + + D+C  CG+C   CP DA+
Sbjct: 60  SCMHCGNPACLIACPAQAYTVRSDGLVVLNRDKCTGCGLCVSACPYDAV 108


>gi|120553869|ref|YP_958220.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter
           aquaeolei VT8]
 gi|120323718|gb|ABM18033.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter
           aquaeolei VT8]
          Length = 192

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 114 DECIGC--TKCIQACPVDAILGAAKHMHTVIESECTGCDLCVEPCPVDCI 161



 Score = 40.1 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D      + +    I  DECI C  C   CPVDAI
Sbjct: 91  VEPQPLDAEHGVEQAKRVAVIREDECIGCTKCIQACPVDAI 131


>gi|94309880|ref|YP_583090.1| NADH dehydrogenase subunit I [Cupriavidus metallidurans CH34]
 gi|115502539|sp|Q1LPV5|NUOI_RALME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|93353732|gb|ABF07821.1| NADH:ubiquinone oxidoreductase, chain I [Cupriavidus metallidurans
           CH34]
          Length = 163

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAISIESDVRNDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 62 ERCIACKLCEAVCPALAISIESD 84


>gi|300245721|gb|ADJ93918.1| putative benzoate-degrading protein BamE [Clostridia bacterium
           enrichment culture clone BF]
          Length = 535

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C   +CV VC        E        ++P  C   G+C  +CP  AI        E
Sbjct: 466 CIGC--AECVAVCTYGAIEMRETRQGKKAIVNPVLCKGDGLCNAKCPTGAISLKHFTDKE 523

Query: 65  LWLKINSE 72
           LW +I++ 
Sbjct: 524 LWSQIDAA 531


>gi|300855209|ref|YP_003780193.1| putative Iron only hydrogenase large subunit [Clostridium
           ljungdahlii DSM 13528]
 gi|300435324|gb|ADK15091.1| predicted Iron only hydrogenase large subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 448

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 8   NCILCKHTD-CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C+  K    C + CP D  +    +N   I  ++C DCG C   CP   I  
Sbjct: 84  ECVDEKGEILCQKTCPFDAIFIDNKKNCAYIDKEKCTDCGFCVDVCPTGGIMD 136


>gi|300712349|ref|YP_003738163.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
 gi|299126032|gb|ADJ16371.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
          Length = 712

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++ C       C  +CP D     E  L  + ++C++CG+CE  CP  AI
Sbjct: 571 VSDACT--LTPTCSNLCPTDAIRRTEWGLEFNHEKCVNCGLCEEGCPESAI 619



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 15  TDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
             C + CP D       + + I P  C +CG C   CP  A+         +  ++ +
Sbjct: 312 RACYDACPHDAVAKPRPDEVDIDPVACQNCGACTSACPTGAVSLREPSNERIAREVEA 369



 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VT+ CI C    CV   P          + IHP+   D G     CP DAI+ D
Sbjct: 195 VTDECISC--MKCVHEGPDGMVTRRP--VDIHPEA-PD-GEWTDVCPTDAIEMD 242


>gi|317048932|ref|YP_004116580.1| NADH-quinone oxidoreductase subunit I [Pantoea sp. At-9b]
 gi|316950549|gb|ADU70024.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. At-9b]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|255314562|ref|ZP_05356145.1| putative nitrite and sulfite reductase subunit [Clostridium
           difficile QCD-76w55]
          Length = 278

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +E C+ CK    VEVCPV      +   L I  + C +CG C   C  D+I+ + E G +
Sbjct: 132 SELCVGCKKCAVVEVCPVKAAKLTDKGKLEIDSNLCNNCGKCIESCNFDSIE-EKESGYK 190

Query: 65  LWL 67
           +++
Sbjct: 191 VYI 193



 Score = 33.6 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 18  VEVCPVDCFYEGENFLAI--------HPDECIDCGVCE--PECPVDAIKPDTEPGLE 64
           V  CP +C     N L I          + C+ C  C     CPV A K   +  LE
Sbjct: 105 VGGCPNNCIKPDLNDLGIVGQRVPDYDSELCVGCKKCAVVEVCPVKAAKLTDKGKLE 161


>gi|212212190|ref|YP_002303126.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuG_Q212]
 gi|212010600|gb|ACJ17981.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuG_Q212]
          Length = 168

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        G              I   +CI+CG CE  CPVDAI
Sbjct: 66  ERCIACKL--CEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAI 123



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 66 ERCIACKLCEAVCPACAITIEAGP 89


>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
          Length = 618

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           +V   C  C    C   CP D     +     +  D+CI CG+C   C  +AI
Sbjct: 565 IVDGTCTGCGL--CARKCPQDAITGAKKETHVLDQDKCIKCGICYDACKFNAI 615



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAI 55
              I    C  CG+C  +CP DAI
Sbjct: 562 HYEIVDGTCTGCGLCARKCPQDAI 585


>gi|121534032|ref|ZP_01665858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
 gi|121307543|gb|EAX48459.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosinus carboxydivorans Nor1]
          Length = 205

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + CI C    C +VCP +     E    I  + C  CG C   CPV AI  +
Sbjct: 13 DKCIGCGV--CSKVCPAETITIKERKAEIDLNNCRGCGACNQRCPVYAITME 62



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           +  D+CI CGVC   CP + I
Sbjct: 9  VVDKDKCIGCGVCSKVCPAETI 30


>gi|113867168|ref|YP_725657.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525944|emb|CAJ92289.1| Predicted NADH:ubiquinone oxidoreductase,subunit RnfB [Ralstonia
           eutropha H16]
          Length = 269

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  + PD C  C +C   CPVD I
Sbjct: 88  CIGC--TLCIQACPVDAIAGAAKQMHTVIPDWCTGCDLCVAPCPVDCI 133



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 83  IDESLCIGCTLCIQACPVDAI 103


>gi|119187897|ref|XP_001244555.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Coccidioides immitis RS]
          Length = 232

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 131 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 188

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 189 ESP----------NAEYATETREELLYNKEKLLANGDKWE 218


>gi|39996191|ref|NP_952142.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39982956|gb|AAR34415.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|298505204|gb|ADI83927.1| iron-sulfur cluster-binding oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 368

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C++ C  D     E    I P  C  C  C   CP  AI        +L +K
Sbjct: 195 CTGCGL--CLKACAHDAIAIIEGKAKIDPKACAGCSRCITVCPTKAITIQWNEAADLVMK 252

Query: 69  INSEYAT 75
             +E+A 
Sbjct: 253 KMAEFAK 259


>gi|83592898|ref|YP_426650.1| NADH dehydrogenase subunit I [Rhodospirillum rubrum ATCC 11170]
 gi|115502542|sp|Q2RU32|NUOI_RHORT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|83575812|gb|ABC22363.1| NADH-quinone oxidoreductase, chain I [Rhodospirillum rubrum ATCC
           11170]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + EP
Sbjct: 61 ERCIACKLCEAICPAQAITIEAEP 84



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CEEACPVDAIVEGPNF 123


>gi|317152026|ref|YP_004120074.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|317152315|ref|YP_004120363.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|316942277|gb|ADU61328.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|316942566|gb|ADU61617.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
          Length = 446

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    C  C   +C  VC         +      + P  CI+CG C   CP  AI     
Sbjct: 54  VDATKCEACG--ECEAVCATGAIQPINDDGIRAVVDPAACINCGQCLTHCPYGAIYEGVS 111

Query: 61  PGLELWLKI 69
              E++ K+
Sbjct: 112 YVDEIFEKL 120



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          F+ +   +C  CG CE  C   AI+P  + G+ 
Sbjct: 51 FVQVDATKCEACGECEAVCATGAIQPINDDGIR 83


>gi|270261663|ref|ZP_06189936.1| transporter [Serratia odorifera 4Rx13]
 gi|270045147|gb|EFA18238.1| transporter [Serratia odorifera 4Rx13]
          Length = 190

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 AYIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIE 161


>gi|261211018|ref|ZP_05925308.1| NrfC protein [Vibrio sp. RC341]
 gi|260839993|gb|EEX66593.1| NrfC protein [Vibrio sp. RC341]
          Length = 212

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACPYQ 129


>gi|260550890|ref|ZP_05825096.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|260406017|gb|EEW99503.1| ferredoxin [Acinetobacter sp. RUH2624]
          Length = 87

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I    C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCD--MCLPECPNTAIFEGSKVYEIDSSRCTECVGFYEAPTCKAVCPIDC 58

Query: 55 IKPD 58
          I+PD
Sbjct: 59 IEPD 62


>gi|257064962|ref|YP_003144634.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792615|gb|ACV23285.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 226

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C    CV VCP     + E+    I   +CI C  C   CP      + E 
Sbjct: 58  YYLCVQCQHCADPKCVAVCPTKASQKMEDGTVQIDKSKCIGCQFCVMACPYGVRYLNEEE 117


>gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 593

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + E C  C    C  VCP D           I  + C+ CG C   C   AI  +
Sbjct: 541 IEETCTGCG--MCKRVCPADAIRGTRKKPHFIDQELCVKCGSCFDSCKFGAILKE 593


>gi|239624788|ref|ZP_04667819.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521174|gb|EEQ61040.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 171

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C+   C++ CP  C  +     F       CI C  C   CP  A +   +  L+ 
Sbjct: 59  ACMHCEDAPCIKGCPTGCLRKDGETGFTVYDASVCIGCHSCAMACPFGAPRFGRDGRLKK 118


>gi|223984910|ref|ZP_03635015.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM
           12042]
 gi|223963121|gb|EEF67528.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM
           12042]
          Length = 854

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+     + CP+      +  L I  D C  CG C  +CP  AI+  T
Sbjct: 715 CRGCQVCQIEKNCPIGAAKLIDGKLQIDADLCNHCGRCVSKCPFKAIEEST 765


>gi|167770295|ref|ZP_02442348.1| hypothetical protein ANACOL_01638 [Anaerotruncus colihominis DSM
          17241]
 gi|167667617|gb|EDS11747.1| hypothetical protein ANACOL_01638 [Anaerotruncus colihominis DSM
          17241]
          Length = 279

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          C  C    CV  CP       +  +   PD+C++C  C   CP
Sbjct: 46 CRNCG--ACVPGCPEGALSMADGRVVWDPDKCVECDACIITCP 86


>gi|157149191|ref|YP_001456510.1| hypothetical protein CKO_05031 [Citrobacter koseri ATCC BAA-895]
 gi|157086396|gb|ABV16074.1| hypothetical protein CKO_05031 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 17/53 (32%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +     C  C+   C  VCP          + +    CI C  C   CP  A
Sbjct: 51  AFTTAAACRQCEDAPCANVCPTQAIRRDHGHIFVEQARCIGCKSCMLACPFGA 103


>gi|157145946|ref|YP_001453265.1| hypothetical protein CKO_01699 [Citrobacter koseri ATCC BAA-895]
 gi|157083151|gb|ABV12829.1| hypothetical protein CKO_01699 [Citrobacter koseri ATCC BAA-895]
          Length = 208

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C++VCP+      + +  +A+    CI C  C   CP
Sbjct: 120 ADTCRQCKDPQCMKVCPIGAITWKQDDGCIAVDHKRCIGCSACTTACP 167


>gi|89895807|ref|YP_519294.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670238|ref|YP_002460673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335255|dbj|BAE84850.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540498|gb|ACL22237.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 207

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPV 52
           NC  C +  CV+ CPV   +   E+ + I   D+CI C  C   CP 
Sbjct: 64  NCQHCANPACVKACPVGATYQREEDGVVIQDYDQCIGCRYCMVACPY 110


>gi|283786349|ref|YP_003366214.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium
           ICC168]
 gi|282949803|emb|CBG89426.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium
           ICC168]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  --PDTEPGL 63
             PD E G 
Sbjct: 116 LTPDFELGE 124


>gi|260768580|ref|ZP_05877514.1| electron transport protein hydN [Vibrio furnissii CIP 102972]
 gi|260616610|gb|EEX41795.1| electron transport protein hydN [Vibrio furnissii CIP 102972]
 gi|315180289|gb|ADT87203.1| electron transport protein (FeS senter) from formate to hydrogen
           [Vibrio furnissii NCTC 11218]
          Length = 181

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +V T   C  C    C +VCP +     + ++ +    CI C  C   CP  A
Sbjct: 50  AHVTTPVMCRQCDDAPCAQVCPNNAIVHEDGYIKVIQSRCIGCKTCAIACPYGA 103


>gi|88601754|ref|YP_501932.1| 2-oxoacid:acceptor oxidoreductase subunit delta,
          pyruvate/2-ketoisovalerate [Methanospirillum hungatei
          JF-1]
 gi|88187216|gb|ABD40213.1| pyruvate ferredoxin oxidoreductase, delta subunit
          [Methanospirillum hungatei JF-1]
          Length = 85

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C  C    C  VCP  C   G+       D C  CG+C  ECP  AI  +TE 
Sbjct: 32 DKCTSCG--MCQLVCPEGCILTGDKQFNPDYDFCKGCGLCAQECPAKAITMETEE 84


>gi|58584728|ref|YP_198301.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75507969|sp|Q5GSG5|NUOI_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|58419044|gb|AAW71059.1| NADH:ubiquinone oxidoreductase chain I [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 160

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 59  ERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 115



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 59 ERCIACKLCEVICPAQAIVIEAEERED 85



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 100 CIYCGL--CQEACPVDAIVEGPNF 121


>gi|89074823|ref|ZP_01161277.1| electron transport protein (FeS senter) from formate to hydrogen
           [Photobacterium sp. SKA34]
 gi|89049398|gb|EAR54960.1| electron transport protein (FeS senter) from formate to hydrogen
           [Photobacterium sp. SKA34]
          Length = 182

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +V T   C  C    C +VCP +     + F+ +    CI C  C   CP  A
Sbjct: 50  AHVTTPVMCRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGA 103


>gi|305666617|ref|YP_003862904.1| ferredoxin [Maribacter sp. HTCC2170]
 gi|88708888|gb|EAR01123.1| ferredoxin [Maribacter sp. HTCC2170]
          Length = 298

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C  + C ++CP D      N   I PD C  C  C   CP  +I
Sbjct: 221 ACIGC--SKCEDICPKDAIDMDNNLAYIDPDLCTLCRKCVEVCPTHSI 266



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 13  KHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
              DCV VC  D  Y  E      I  D+C  CG C   CP
Sbjct: 145 GDGDCVNVCDFDAMYMDEKTGLPVIITDKCTSCGACVKACP 185



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 21/77 (27%)

Query: 1   MTYVVTENCILCKHTDCVEVCP-----------------VDCFYEGENFLAIHP--DECI 41
           +  ++T+ C  C    CV+ CP                 V C  E +  +A       CI
Sbjct: 166 LPVIITDKCTSCG--ACVKACPRHILEMRPRNKRDLKIFVGCLNEDKGGIAKRACDVACI 223

Query: 42  DCGVCEPECPVDAIKPD 58
            C  CE  CP DAI  D
Sbjct: 224 GCSKCEDICPKDAIDMD 240


>gi|325280075|ref|YP_004252617.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324311884|gb|ADY32437.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 330

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  CP D  +     L   +  D+C+ CG C   CP + I+
Sbjct: 142 CLGCGD--CVAACPFDAIHMDSTTLLPVVDDDKCVACGACVKACPRNIIE 189



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            CI C    C + CP D      N   I   +C  C  C   CP  AI  
Sbjct: 220 ACIGCG--KCAKECPFDAITVENNLAYIDYSKCRLCRKCVGVCPTGAIHE 267



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA--------IHPDE-----------CI 41
           +  V  + C+ C    CV+ CP +                  ++ D+           CI
Sbjct: 165 LPVVDDDKCVACG--ACVKACPRNIIELRNKGPKDRRVFVSCVNKDKGGVARKACKAACI 222

Query: 42  DCGVCEPECPVDAIKPDTEPGLELWLK 68
            CG C  ECP DAI  +       + K
Sbjct: 223 GCGKCAKECPFDAITVENNLAYIDYSK 249



 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 40  CIDCGVCEPECPVDAIKPDT 59
           C+ CG C   CP DAI  D+
Sbjct: 142 CLGCGDCVAACPFDAIHMDS 161


>gi|291525395|emb|CBK90982.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Eubacterium rectale DSM 17629]
          Length = 289

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  D+C +C  C   CP DA
Sbjct: 165 DDCIQCGV--CVKACREGALSMEDGRIVIDRDKCNNCARCVKSCPTDA 210



 Score = 33.6 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C++    D   +G   +    D+CI CGVC   C   A+  + 
Sbjct: 143 NCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186


>gi|317152862|ref|YP_004120910.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2]
 gi|316943113|gb|ADU62164.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2]
          Length = 266

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V+E C  C    C E CP+    +  +   I  ++CI C  C   CP +A
Sbjct: 191 VSEKCAQCGV--CAETCPMGAI-DLNDSAVIDKEKCITCCACIKICPQEA 237


>gi|262193778|ref|YP_003264987.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Haliangium ochraceum DSM 14365]
 gi|262077125|gb|ACY13094.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Haliangium ochraceum DSM 14365]
          Length = 445

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 7   ENCILCKHTDCVEVCPV-DCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI      CV  CP  D      G   L I+P  C+  G C   CPVDAI
Sbjct: 58  DICIG--SAACVNACPEKDVIGLVHGRAQL-INPLACVGHGACAAACPVDAI 106



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 35 IHPDECIDCGVCEPECP 51
          I PD CI    C   CP
Sbjct: 55 IDPDICIGSAACVNACP 71


>gi|188533354|ref|YP_001907151.1| NADH dehydrogenase subunit I [Erwinia tasmaniensis Et1/99]
 gi|259907934|ref|YP_002648290.1| NADH dehydrogenase subunit I [Erwinia pyrifoliae Ep1/96]
 gi|292488836|ref|YP_003531723.1| NADH dehydrogenase I subunit I [Erwinia amylovora CFBP1430]
 gi|292899987|ref|YP_003539356.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946]
 gi|226737392|sp|B2VIN2|NUOI_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|188028396|emb|CAO96257.1| NADH dehydrogenase I subunit I [Erwinia tasmaniensis Et1/99]
 gi|224963556|emb|CAX55046.1| NADH dehydrogenase I subunit I [Erwinia pyrifoliae Ep1/96]
 gi|283477815|emb|CAY73731.1| NADH dehydrogenase I chain I [Erwinia pyrifoliae DSM 12163]
 gi|291199835|emb|CBJ46959.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946]
 gi|291554270|emb|CBA21585.1| NADH dehydrogenase I chain I [Erwinia amylovora CFBP1430]
 gi|310768158|gb|ADP13108.1| NADH dehydrogenase subunit I [Erwinia sp. Ejp617]
 gi|312172996|emb|CBX81251.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC BAA-2158]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETADGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|168235271|ref|ZP_02660329.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738110|ref|YP_002116600.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194713612|gb|ACF92833.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291578|gb|EDY30930.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 157

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQALRRDRGHIFVTPSRCIGCKSCMLACPFGA 103


>gi|167945763|ref|ZP_02532837.1| iron-sulfur cluster-binding protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 164

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY   ++C+ C+   CV VCP    Y  E    + +  D+CI C  C   CP    + D 
Sbjct: 66  TYHFPKSCLHCEDPPCVPVCPTGASYKREDNGVVLVDYDKCIGCKYCSWACPYGVREFDE 125

Query: 60  EP 61
           + 
Sbjct: 126 KE 127


>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
 gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
          Length = 597

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +TY + +  C  C  T C   CPV            I   +CI CG C  +C   AI  +
Sbjct: 540 LTYKIIDLKCKGC--TACARGCPVGAISGTVKQPHSIDTAKCIKCGACMAKCKFGAIIKE 597


>gi|167549680|ref|ZP_02343439.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|198242928|ref|YP_002216391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937444|gb|ACH74777.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205325199|gb|EDZ13038.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|326624142|gb|EGE30487.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEY 125


>gi|83592762|ref|YP_426514.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|399277|sp|P31894|COOF_RHORU RecName: Full=Iron-sulfur protein
 gi|1498747|gb|AAC45122.1| iron sulfur protein [Rhodospirillum rubrum]
 gi|83575676|gb|ABC22227.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 190

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   C   CP     + +  + I    CI C +C   CP  AI
Sbjct: 65  CRQCEDAPCTFACPTGACRQADGQVQIVEQHCIGCKLCVMVCPFGAI 111


>gi|113970402|ref|YP_734195.1| electron transport complex protein RnfB [Shewanella sp. MR-4]
 gi|123324999|sp|Q0HIH9|RNFB_SHESM RecName: Full=Electron transport complex protein rnfB
 gi|113885086|gb|ABI39138.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-4]
          Length = 193

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTAD-CTGCDLCVEPCPVDCI 159


>gi|327291045|ref|XP_003230232.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Anolis carolinensis]
          Length = 208

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 107 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 163



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 107 ERCIACKLCEAICPAQAITIEAEPRAD 133



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 148 CIYCGF--CQEACPVDAIVEGPNF 169


>gi|268324765|emb|CBH38353.1| conserved hypothetical protein, 4Fe-4S binding domain family
           [uncultured archaeon]
          Length = 895

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 19/84 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL---------AIH--------PDECIDCGVC 46
           V  + C+ C    CV+VCPV+     E  +          I          D CI CG C
Sbjct: 811 VDEQICVGCGV--CVDVCPVEAIELTEELVPVVTFGVATVISGMKKVAKVGDGCIGCGSC 868

Query: 47  EPECPVDAIKPDTEPGLELWLKIN 70
              CP  A+        +L+ +++
Sbjct: 869 ASYCPSGAMSLKHFRDRQLYAQLD 892



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
            +    C+ CGVC   CPV+AI+
Sbjct: 810 VVDEQICVGCGVCVDVCPVEAIE 832


>gi|255526336|ref|ZP_05393251.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296187009|ref|ZP_06855409.1| putative dimethylsulfoxide reductase, chain B [Clostridium
           carboxidivorans P7]
 gi|255509984|gb|EET86309.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296048447|gb|EFG87881.1| putative dimethylsulfoxide reductase, chain B [Clostridium
           carboxidivorans P7]
          Length = 183

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           Y ++  C  C +  CV+ CP     + +    + I+ ++C+ C  C   CP  
Sbjct: 52  YFISMACNHCANPACVKACPTGACNKRKEDGIVVINKEKCVGCRKCVKACPYG 104


>gi|242309592|ref|ZP_04808747.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
 gi|239523593|gb|EEQ63459.1| 4Fe-4S ferredoxin [Helicobacter pullorum MIT 98-5489]
          Length = 189

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C +C+HT CV VCP    +  E+ +  I  ++C+ C  C   CP +A
Sbjct: 58  SCEMCEHTPCVTVCPTHASFMDEDGIVDIDANKCVGCLYCVVACPYNA 105



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----------VCEPECPVDA-IKP 57
           C+ C +  CV  CP +  Y         PD+C  C            C   CP DA I  
Sbjct: 91  CVGCLY--CVVACPYNARYVNPETKV--PDKCNFCKHTHLKQYGEPACVAVCPTDALIFG 146

Query: 58  DTEPG 62
           D +  
Sbjct: 147 DLDDP 151


>gi|206890111|ref|YP_002249095.1| iron-sulfur protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742049|gb|ACI21106.1| iron-sulfur protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 322

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           V + C+ C    C   C VD F + E    + +P  C+ C  C   CP D    +
Sbjct: 129 VKKQCMHCIDAACQSACFVDAFKKTEQGAVLYNPSLCVGCRYCMIACPFDIPAYE 183


>gi|90578220|ref|ZP_01234031.1| electron transport protein (FeS senter) from formate to hydrogen
           [Vibrio angustum S14]
 gi|90441306|gb|EAS66486.1| electron transport protein (FeS senter) from formate to hydrogen
           [Vibrio angustum S14]
          Length = 182

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +V T   C  C    C +VCP +     + F+ +    CI C  C   CP  A
Sbjct: 50  AHVTTPVMCRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGA 103


>gi|304319939|ref|YP_003853582.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503]
 gi|303298842|gb|ADM08441.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503]
          Length = 162

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAEERADGSRRTTRYDIDMVKCIYCGLCQESCPVDAI 117



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEERAD 87


>gi|66818078|ref|XP_642732.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|60470829|gb|EAL68801.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 210

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRQDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRQD 135



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|325960233|ref|YP_004291699.1| helix-turn-helix domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331665|gb|ADZ10727.1| helix-turn-helix domain protein [Methanobacterium sp. AL-21]
          Length = 149

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++CI C    CV+ C +D     +    I  D C  C +C  +CP ++I
Sbjct: 96  VKDSCIGCG--ICVDTCLIDAIVLDDLKAHIDSDICCGCQICAEKCPTNSI 144



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 37  PDECIDCGVCEPECPVDAIKPDT 59
            D CI CG+C   C +DAI  D 
Sbjct: 97  KDSCIGCGICVDTCLIDAIVLDD 119


>gi|221234957|ref|YP_002517393.1| NADH dehydrogenase subunit I [Caulobacter crescentus NA1000]
 gi|220964129|gb|ACL95485.1| NADH-quinone oxidoreductase chain I [Caulobacter crescentus NA1000]
          Length = 193

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 14/75 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI 
Sbjct: 92  ERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIV 149

Query: 57  --PDTEPGLELWLKI 69
             P+TE   E   ++
Sbjct: 150 EGPNTEFATETREEL 164


>gi|221068920|ref|ZP_03545025.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
          testosteroni KF-1]
 gi|220713943|gb|EED69311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Comamonas
          testosteroni KF-1]
          Length = 86

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y GE F  I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNDAIYMGEEFYEIDPHKCTECVGHFDEPQCVQICPVAC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I     P    +++ +     ++  +T  K
Sbjct: 59 I-----PVNPEYIESHEVLFKKYEQLTHAK 83


>gi|188591105|ref|YP_001795705.1| 4fe-4S ferredoxin-type protein [Cupriavidus taiwanensis LMG
          19424]
 gi|170937999|emb|CAP62983.1| putative 4Fe-4S ferredoxin-type protein [Cupriavidus taiwanensis
          LMG 19424]
          Length = 86

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +    G     I P++C +C        C+  CPV  
Sbjct: 1  MALMITDDCINCDV--CEPECPNEAISMGPEIYEIDPNKCTECVGHFDEPQCQQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|85059572|ref|YP_455274.1| NADH dehydrogenase subunit I [Sodalis glossinidius str.
           'morsitans']
 gi|110287775|sp|Q2NSK6|NUOI_SODGM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84780092|dbj|BAE74869.1| NADH dehydrogenase I subunit I [Sodalis glossinidius str.
           'morsitans']
          Length = 180

 Score = 51.3 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|332750133|gb|EGJ80544.1| iron-sulfur protein [Shigella flexneri 4343-70]
          Length = 134

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 34 ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 82


>gi|325288372|ref|YP_004264553.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963773|gb|ADY54552.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 574

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            VT +C+ C    C+++ CP  C  +    + I+  +C+ CG+C+  C   AIK +
Sbjct: 520 FVTSDCVGC--MQCLKLGCP--CIVKENKRVVINSTQCVGCGLCQTVCTRHAIKKE 571


>gi|302343175|ref|YP_003807704.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639788|gb|ADK85110.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 695

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 10  ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           I C     C + CP      G + L  I P  C  CG CE  CP + I 
Sbjct: 136 IGCLGLGTCAKACPFGAITIGADNLPHIDPSLCTGCGTCERVCPKNIIH 184


>gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus obeum A2-162]
          Length = 623

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP             I  + CI CG C+  C  DAI  +
Sbjct: 568 HINPEFCIGCG--KCAKNCPAAAISGKIKHPYHIDNELCIKCGTCKDNCNFDAIYVE 622



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I+P+ CI CG C   CP  AI
Sbjct: 565 RQFHINPEFCIGCGKCAKNCPAAAI 589


>gi|251789756|ref|YP_003004477.1| RnfABCDGE type electron transport complex subunit B [Dickeya zeae
           Ech1591]
 gi|247538377|gb|ACT06998.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya zeae
           Ech1591]
          Length = 196

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 AWIDEENCIGC--TKCIQACPVDAIIGSTRAVHTVIRDLCTGCNLCVAPCPTDCIE 162



 Score = 37.4 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
           +E  P+D             I  + CI C  C   CPVDAI
Sbjct: 91  IEPQPLDAGTPQKPEPQVAWIDEENCIGCTKCIQACPVDAI 131


>gi|229520552|ref|ZP_04409976.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
 gi|229342376|gb|EEO07370.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
          Length = 553

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGTDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 34.4 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDSDLCAHSSRGVKGCERCVDACPAGALSSEGTDQTGHRIQIN 213


>gi|258515910|ref|YP_003192132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257779615|gb|ACV63509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 95

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG----ENFLAI-HPDECIDCGVCEPECPVDAI 55
          M  V T  C  C    CV +CP     +        + I +P  CI CG C   CP  AI
Sbjct: 24 MA-VNTRLCKAC--WKCVSICPRGVIGKIRFLFHRHIYILNPGNCIGCGACAKACPEGAI 80

Query: 56 KPDTEPG 62
               PG
Sbjct: 81 IVLKRPG 87


>gi|223040943|ref|ZP_03611205.1| sulfur reductase FeS subunit [Campylobacter rectus RM3267]
 gi|222877787|gb|EEF12906.1| sulfur reductase FeS subunit [Campylobacter rectus RM3267]
          Length = 189

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
            +  +C +C    CV VCP    ++  + L  +    C+ C  C   CP DA
Sbjct: 54  FIRHSCAMCDDAPCVSVCPTGASFQTADGLVLLDRSTCVSCKYCILACPYDA 105



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC----------GVCEPECPVDA 54
           C+ CK+  C+  CP D  Y       I  D+C  C            C   CP +A
Sbjct: 91  CVSCKY--CILACPYDARYVEPKTGEI--DKCTFCFETRVSLGEKPACVTVCPTNA 142


>gi|218779916|ref|YP_002431234.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761300|gb|ACL03766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 289

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T++CI C   +CVEVC ++   E  +   I  D C  CG C   C   AIK
Sbjct: 219 ITDDCIACG--ECVEVCYLNAL-EIVDGKVIRKDICRMCGRCAAACKQHAIK 267


>gi|91787512|ref|YP_548464.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666]
 gi|91696737|gb|ABE43566.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666]
          Length = 426

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 1  MT--YVVTEN------CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          MT  +V+ ++      CI C    C  +CPV           +  ++C  C  C   CP 
Sbjct: 3  MTEIHVIKQHLIDPEICIRCN--TCEAICPVQAITHDSRNYVVDAEKCNLCMACISPCPT 60

Query: 53 DAI 55
           +I
Sbjct: 61 GSI 63



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  D+ 
Sbjct: 14 IDPEICIRCNTCEAICPVQAITHDSR 39


>gi|77164682|ref|YP_343207.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|254434195|ref|ZP_05047703.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Nitrosococcus oceani AFC27]
 gi|76882996|gb|ABA57677.1| Electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|207090528|gb|EDZ67799.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Nitrosococcus oceani AFC27]
          Length = 209

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 14/91 (15%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DTE 60
           V+ EN CI C  T C++ CPVD        L  +   EC  C +C   CPVD I+     
Sbjct: 106 VIDENRCIGC--TLCIQACPVDAILGAPKQLHTVITAECTGCELCVAPCPVDCIEMVPVA 163

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAA 91
           P    W         +WP   T    LP AA
Sbjct: 164 PEPGTW---------KWPFPETTHPPLPIAA 185


>gi|14590750|ref|NP_142820.1| hypothetical protein PH0893 [Pyrococcus horikoshii OT3]
 gi|3257304|dbj|BAA29987.1| 161aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 161

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C+   C  VCP++  +   N   +  D+CI C +C   CP+  +  D
Sbjct: 61  CLQCEDAPCELVCPMEAIHMEGNIRIVDDDKCIRCKMCTLVCPIGGVLYD 110


>gi|301027423|ref|ZP_07190760.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300394931|gb|EFJ78469.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 162

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVSACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|254786925|ref|YP_003074354.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
 gi|237685549|gb|ACR12813.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
          Length = 200

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I+
Sbjct: 115 AFIREDECIGC--TKCIQACPVDAILGAAKQMHTVIGSECTGCDLCVEPCPVDCIE 168


>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 624

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  E C  C    C   CP +    E      I  ++C  CGVC  +C   AI+
Sbjct: 569 YVINPELCKGCGL--CARFCPQNAISGERGKPYVIDQEKCAKCGVCVEKCKFKAIE 622



 Score = 41.7 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +CP            I+P+ C  CG+C   CP +AI  +
Sbjct: 557 ICPSG-MCTAFKRYVINPELCKGCGLCARFCPQNAISGE 594


>gi|254410698|ref|ZP_05024476.1| 4Fe-4S binding domain protein [Microcoleus chthonoplastes PCC
          7420]
 gi|196182053|gb|EDX77039.1| 4Fe-4S binding domain protein [Microcoleus chthonoplastes PCC
          7420]
          Length = 537

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M Y ++++C  C    C   CP       +N   I P+ C +C G      C   CP+ +
Sbjct: 1  MAYKLSQSCTGCD--ICRTQCPTGAIKVKDNQTWIDPNLCNNCEGYYPEPQCVIHCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PVP 61



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
                  C  C +C  +CP  AIK       + W+  N
Sbjct: 1  MAYKLSQSCTGCDICRTQCPTGAIKVKDN---QTWIDPN 36


>gi|218777911|ref|YP_002429229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759295|gb|ACL01761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 271

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1   MTYVVTENCILCKHTDCV-EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +T  VT+ C+ C    C+ ++C V+     +    I  D C  CG C   CP +AI+ + 
Sbjct: 195 LTVAVTDKCVGCG--ACINDICFVNAIRLVDGKAEISGD-CRGCGRCVEICPSEAIRVNF 251

Query: 60  EPGLELWLKINS 71
             G  +   IN 
Sbjct: 252 HGGASVEGAINR 263


>gi|115751579|ref|XP_792622.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, 23kDa (NADH-coenzyme Q reductase), partial
           [Strongylocentrotus purpuratus]
 gi|115932140|ref|XP_001191284.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, 23kDa (NADH-coenzyme Q reductase), partial
           [Strongylocentrotus purpuratus]
          Length = 195

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 94  ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 150



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 94  ERCIACKLCEAVCPAQAITIEAEPRAD 120



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 135 CIYCGF--CQEACPVDAIVEGPNF 156


>gi|255315823|ref|ZP_05357406.1| putative nitroreductase [Clostridium difficile QCD-76w55]
 gi|260684650|ref|YP_003215935.1| putative nitroreductase [Clostridium difficile CD196]
 gi|260688308|ref|YP_003219442.1| putative nitroreductase [Clostridium difficile R20291]
 gi|260210813|emb|CBA65837.1| putative nitroreductase [Clostridium difficile CD196]
 gi|260214325|emb|CBE06677.1| putative nitroreductase [Clostridium difficile R20291]
          Length = 260

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 14 ELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 60



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 9  IEVDKELCIGCGLCKNDCPVNNIIIENKKS 38


>gi|2127962|pir||E64448 heterodisulfide reductase (EC 1.-.-.-) - Methanococcus jannaschii
          Length = 460

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E     G                  I  D CI CG
Sbjct: 42  YVDENICTGCG--ACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTIDMDHCIRCG 99

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   AI+ D +P  
Sbjct: 100 LCEKACGPGAIRYDQKPEE 118



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECIDCGVCEPECPVDA 54
             V  + C  C    C ++CP +     E +  L   ++   C  CG C   CP  A
Sbjct: 379 AVVDEDVCGGC--QVCAKMCPYNAITYVEKDGHLVAQVNDVACKGCGSCAGACPSGA 433



 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +  D C  C VC   CP +AI    + G 
Sbjct: 380 VVDEDVCGGCQVCAKMCPYNAITYVEKDGH 409


>gi|313835282|gb|EFS72996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL037PA2]
 gi|314928232|gb|EFS92063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL044PA1]
 gi|314970063|gb|EFT14161.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL037PA3]
 gi|328905958|gb|EGG25734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium sp. P08]
          Length = 605

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+CI C  C  +CPV AI
Sbjct: 502 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCIGCATCFDQCPVHAI 561

Query: 56  K 56
           +
Sbjct: 562 E 562


>gi|219851773|ref|YP_002466205.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
 gi|219546032|gb|ACL16482.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
          Length = 288

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C    CV +CP        +  ++  D+CI+C +C   CP  
Sbjct: 168 CNDCGL--CVNICPTGAISREGSSYSLDLDKCINCSICTASCPTG 210



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 18  VEVCPVDCFYEGEN----FLAIHPD----ECIDCGVCEPECPVDAIKPD 58
           V  CP +C    EN       I P      C DCG+C   CP  AI  +
Sbjct: 138 VTGCPHNCAKATENDIGVMGGIIPGWLEFGCNDCGLCVNICPTGAISRE 186


>gi|254439636|ref|ZP_05053130.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 307]
 gi|198255082|gb|EDY79396.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 307]
          Length = 477

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 5   VTEN-----CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +TE+     CI C    CV VCPV     +G+        ECI CG+C   C     K  
Sbjct: 250 ITEDTPQGDCIDC--MACVNVCPVGIDIRDGQQM------ECITCGLCIDACDDIMAKIG 301

Query: 59  TEPGLELWLKINSEYATQWPNITTK 83
              GL  +L ++ E A +    T +
Sbjct: 302 KPRGLVDYLSLDDEEAERNAQPTKR 326


>gi|184158816|ref|YP_001847155.1| ferredoxin [Acinetobacter baumannii ACICU]
 gi|332875186|ref|ZP_08443019.1| ferredoxin [Acinetobacter baumannii 6014059]
 gi|183210410|gb|ACC57808.1| Ferredoxin [Acinetobacter baumannii ACICU]
 gi|322507371|gb|ADX02825.1| Putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          1656-2]
 gi|323518731|gb|ADX93112.1| ferredoxin [Acinetobacter baumannii TCDC-AB0715]
 gi|332736630|gb|EGJ67624.1| ferredoxin [Acinetobacter baumannii 6014059]
          Length = 87

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITNDCINCD--MCLPECPNTAIFEGNKVYEIDPLRCTECVGFYDAPTCKVVCPIDC 58

Query: 55 IKPD------TEPGLELWLKIN 70
          IK D       E  LE +  +N
Sbjct: 59 IKQDPVHIENKEQLLEKFKDLN 80


>gi|153824794|ref|ZP_01977461.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
 gi|149741512|gb|EDM55542.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
          Length = 553

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|91786836|ref|YP_547788.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696061|gb|ABE42890.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 695

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V T+ C LC    CV  CP     +      L      C+ CG+C   CP DAI
Sbjct: 560 VNTDTCTLCL--SCVSACPASALQDNPERPQLKFIEKNCVQCGLCAVTCPEDAI 611



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 10  ILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C    C+++C        +    + ++P+ CI CG C   CP  A+        E 
Sbjct: 307 VGCN--ACIDICSAGAVSSQKERQQIVVNPNLCIGCGACTTVCPTGALTYAYPRASEQ 362



 Score = 40.9 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           L ++ D C  C  C   CP  A++ + E     +++ N
Sbjct: 558 LVVNTDTCTLCLSCVSACPASALQDNPERPQLKFIEKN 595



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 177 IDLDLCTRCNACVAVCPEGAI 197



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 6/58 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGL 63
           + C  C    CV VCP       +    +   +C     C   C V  AI  + E   
Sbjct: 180 DLCTRCN--ACVAVCPEGAI---DLSYQVDSSKCTSHRDCVAVCKVAGAIDFNREAQA 232


>gi|86357247|ref|YP_469139.1| NADH dehydrogenase subunit I [Rhizobium etli CFN 42]
 gi|190891295|ref|YP_001977837.1| NADH-ubiquinone oxidoreductase, chain I [Rhizobium etli CIAT 652]
 gi|218462497|ref|ZP_03502588.1| NADH dehydrogenase subunit I [Rhizobium etli Kim 5]
 gi|218509388|ref|ZP_03507266.1| NADH dehydrogenase subunit I [Rhizobium etli Brasil 5]
 gi|115502507|sp|Q2K9S4|NUOI1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|86281349|gb|ABC90412.1| NADH-ubiquinone oxidoreductase chain I protein [Rhizobium etli CFN
           42]
 gi|190696574|gb|ACE90659.1| NADH-ubiquinone oxidoreductase protein, chain I [Rhizobium etli
           CIAT 652]
 gi|327188496|gb|EGE55710.1| NADH dehydrogenase subunit I [Rhizobium etli CNPAF512]
          Length = 163

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|49475650|ref|YP_033691.1| NADH dehydrogenase subunit I [Bartonella henselae str. Houston-1]
 gi|81696159|sp|Q6G396|NUOI_BARHE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49238457|emb|CAF27685.1| NADH dehydrogenase I, I subunit [Bartonella henselae str.
           Houston-1]
          Length = 163

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPV+AI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAI 118



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPV+   EG NF
Sbjct: 103 CIYCGF--CQEACPVEAIVEGPNF 124


>gi|16761246|ref|NP_456863.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765648|ref|NP_461263.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141058|ref|NP_804400.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412782|ref|YP_149857.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180891|ref|YP_217308.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612951|ref|YP_001586916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167994669|ref|ZP_02575760.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229690|ref|ZP_02654748.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237338|ref|ZP_02662396.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242439|ref|ZP_02667371.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261663|ref|ZP_02683636.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465976|ref|ZP_02699846.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817949|ref|ZP_02829949.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446441|ref|YP_002041581.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451795|ref|YP_002046374.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469216|ref|ZP_03075200.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738262|ref|YP_002115390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249761|ref|YP_002147279.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263656|ref|ZP_03163730.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361716|ref|YP_002141352.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200386777|ref|ZP_03213389.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929042|ref|ZP_03220185.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353436|ref|YP_002227237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857739|ref|YP_002244390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213028651|ref|ZP_03343098.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052937|ref|ZP_03345815.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213419033|ref|ZP_03352099.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427017|ref|ZP_03359767.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580776|ref|ZP_03362602.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612295|ref|ZP_03370121.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|224583193|ref|YP_002636991.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912400|ref|ZP_04656237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75505657|sp|Q57M35|NUOI_SALCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81678159|sp|Q5PN58|NUOI_SALPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81706883|sp|Q7CQ51|NUOI_SALTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81766252|sp|Q8XFD5|NUOI_SALTI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282717|pir||AG0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420862|gb|AAL21222.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503545|emb|CAD07553.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136684|gb|AAO68249.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127039|gb|AAV76545.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128524|gb|AAX66227.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362315|gb|ABX66083.1| hypothetical protein SPAB_00657 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405104|gb|ACF65326.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410099|gb|ACF70318.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455580|gb|EDX44419.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713764|gb|ACF92985.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631186|gb|EDX49746.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093192|emb|CAR58636.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213464|gb|ACH50861.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241911|gb|EDY24531.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289600|gb|EDY28963.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603875|gb|EDZ02420.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321586|gb|EDZ06785.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273217|emb|CAR38180.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327493|gb|EDZ14257.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335833|gb|EDZ22597.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338317|gb|EDZ25081.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345035|gb|EDZ31799.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349680|gb|EDZ36311.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709542|emb|CAR33887.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467720|gb|ACN45550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247527|emb|CBG25354.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994416|gb|ACY89301.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158879|emb|CBW18392.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913312|dbj|BAJ37286.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086755|emb|CBY96527.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222977|gb|EFX48048.1| NADH-ubiquinone oxidoreductase chain I [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617067|gb|EFY13973.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617627|gb|EFY14526.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624743|gb|EFY21572.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630292|gb|EFY27062.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634473|gb|EFY31206.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639183|gb|EFY35875.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640046|gb|EFY36713.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645733|gb|EFY42257.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651508|gb|EFY47883.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656068|gb|EFY52367.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659421|gb|EFY55668.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665881|gb|EFY62064.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669879|gb|EFY66020.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673865|gb|EFY69962.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678623|gb|EFY74679.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683581|gb|EFY79595.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687657|gb|EFY83627.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715370|gb|EFZ06941.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323193509|gb|EFZ78714.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198414|gb|EFZ83516.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201928|gb|EFZ86990.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208534|gb|EFZ93473.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209757|gb|EFZ94681.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218293|gb|EGA03003.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222949|gb|EGA07298.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227385|gb|EGA11550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232288|gb|EGA16391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235678|gb|EGA19762.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241161|gb|EGA25197.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244903|gb|EGA28905.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250022|gb|EGA33916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251634|gb|EGA35502.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254945|gb|EGA38736.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260325|gb|EGA43944.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268099|gb|EGA51576.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270808|gb|EGA54246.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989254|gb|AEF08237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEY 125


>gi|121603741|ref|YP_981070.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592710|gb|ABM36149.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 710

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           I C  + C++VC        ++   I  +P+ C+ CG C   CP  AI        E 
Sbjct: 314 IGC--SACIDVCSASAISSDKSRQQIKVNPNLCVGCGACTTVCPSGAISYAYPRPAEQ 369



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDA 54
           + C LC    CV  CP     +  + L +      C+ CG+C   CP +A
Sbjct: 578 DACTLCL--SCVNACPASALQDNPDSLQLKFIEKNCVQCGLCVKTCPENA 625



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            LAI  D C  C  C   CP  A++ + +     +++ N
Sbjct: 572 GLAIDKDACTLCLSCVNACPASALQDNPDSLQLKFIEKN 610



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D C  C  C   CP  AI  D +  
Sbjct: 191 IDLDLCTRCNACLSACPEGAIGFDYQID 218


>gi|295106485|emb|CBL04028.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 190

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y +   C  C + +CV VCP    Y  E+ +  +   +CI C  C   CP      D 
Sbjct: 53  YYLPVACQHCDNPECVSVCPTGASYRREDGVVLVDHSKCIGCQYCVMACPYGVRAYDE 110


>gi|257064384|ref|YP_003144056.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792037|gb|ACV22707.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C  C++ +CV+VCP +   +  +    I   +CI C  C   CP      + E 
Sbjct: 59  YFLNVQCQHCENPECVKVCPTEASRKMPDGTVQIDKAKCIGCQFCVMSCPYGVRYLNEEE 118

Query: 62  G 62
           G
Sbjct: 119 G 119


>gi|257792649|ref|YP_003183255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488937|ref|ZP_07947467.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831018|ref|ZP_08164342.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
 gi|257476546|gb|ACV56866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912011|gb|EFV33590.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486939|gb|EGC89385.1| Tat pathway signal sequence domain protein [Eggerthella sp. HGA1]
          Length = 253

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E+C  C    C+  CPV   Y  E      +   +CI CG+C   CP +  + D+E G
Sbjct: 150 EHCKQCADPACMNYCPVHAIYADEESGARTVDTKKCIGCGMCSQACPWNMPRVDSETG 207



 Score = 41.7 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T+ CI C    C + CP +              +CI CG C  +CP  AIK 
Sbjct: 180 VDTKKCIGCG--MCSQACPWNMPRVDSETGV--STKCISCGRCAEQCPNGAIKF 229


>gi|213647942|ref|ZP_03377995.1| putative electron-transport protein [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
          Length = 100

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C+   C  VCPV         + + P  CI C  C   CP  A
Sbjct: 1  CHQCEDAPCANVCPVQAIRRDRGHIFVTPSRCIGCKSCMLACPFGA 46


>gi|170727211|ref|YP_001761237.1| NADH-quinone oxidoreductase subunit I [Shewanella woodyi ATCC
           51908]
 gi|226737416|sp|B1KJV5|NUOI_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|169812558|gb|ACA87142.1| NADH-quinone oxidoreductase, chain I [Shewanella woodyi ATCC 51908]
          Length = 171

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E E+         I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CSVACPVDCISVVKTEKEDGRWEAESFTINFSRCIMCGFCEEACPTHAIQ 106

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKK 84
              +  +  + + N  +  +   I+   
Sbjct: 107 LTPDVEMAEYDRQNLVFEKEHLLISGPG 134


>gi|154249015|ref|YP_001409840.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Fervidobacterium nodosum Rt17-B1]
 gi|154152951|gb|ABS60183.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Fervidobacterium nodosum Rt17-B1]
          Length = 550

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y+++     CK+   C+  CPV       +   +  DECI CG C   CP +A
Sbjct: 6  YIISNR-ANCKYCYKCLRNCPVKAISFQNDVSFVIEDECILCGTCVNVCPQNA 57


>gi|15802828|ref|NP_288855.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 EDL933]
 gi|15832419|ref|NP_311192.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. Sakai]
 gi|16130216|ref|NP_416784.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113653|ref|NP_708163.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 301]
 gi|26248668|ref|NP_754708.1| NADH dehydrogenase subunit I [Escherichia coli CFT073]
 gi|30063707|ref|NP_837878.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 2457T]
 gi|82544759|ref|YP_408706.1| NADH dehydrogenase subunit I [Shigella boydii Sb227]
 gi|89109099|ref|AP_002879.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. W3110]
 gi|91211573|ref|YP_541559.1| NADH dehydrogenase subunit I [Escherichia coli UTI89]
 gi|110642485|ref|YP_670215.1| NADH dehydrogenase subunit I [Escherichia coli 536]
 gi|110806244|ref|YP_689764.1| NADH dehydrogenase subunit I [Shigella flexneri 5 str. 8401]
 gi|117624470|ref|YP_853383.1| NADH dehydrogenase subunit I [Escherichia coli APEC O1]
 gi|157157555|ref|YP_001463624.1| NADH dehydrogenase subunit I [Escherichia coli E24377A]
 gi|157161769|ref|YP_001459087.1| NADH dehydrogenase subunit I [Escherichia coli HS]
 gi|168748130|ref|ZP_02773152.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755033|ref|ZP_02780040.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761280|ref|ZP_02786287.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767907|ref|ZP_02792914.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772993|ref|ZP_02798000.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780136|ref|ZP_02805143.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787188|ref|ZP_02812195.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798451|ref|ZP_02823458.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019410|ref|YP_001724364.1| NADH dehydrogenase subunit I [Escherichia coli ATCC 8739]
 gi|170081898|ref|YP_001731218.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681076|ref|YP_001744479.1| NADH dehydrogenase subunit I [Escherichia coli SMS-3-5]
 gi|170767587|ref|ZP_02902040.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii
           TW07627]
 gi|187731669|ref|YP_001881102.1| NADH dehydrogenase subunit I [Shigella boydii CDC 3083-94]
 gi|188493684|ref|ZP_03000954.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638]
 gi|191166474|ref|ZP_03028304.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A]
 gi|191170159|ref|ZP_03031713.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11]
 gi|193062235|ref|ZP_03043330.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22]
 gi|193068159|ref|ZP_03049123.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019]
 gi|194427176|ref|ZP_03059727.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171]
 gi|194433333|ref|ZP_03065613.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012]
 gi|194436354|ref|ZP_03068456.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1]
 gi|195935658|ref|ZP_03081040.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. EC4024]
 gi|208805658|ref|ZP_03247995.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208814081|ref|ZP_03255410.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208818598|ref|ZP_03258918.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209399174|ref|YP_002271690.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919729|ref|YP_002293813.1| NADH dehydrogenase subunit I [Escherichia coli SE11]
 gi|215487494|ref|YP_002329925.1| NADH dehydrogenase subunit I [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326746|ref|ZP_03442829.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548270|ref|YP_002382061.1| NADH dehydrogenase subunit I [Escherichia fergusonii ATCC 35469]
 gi|218554837|ref|YP_002387750.1| NADH dehydrogenase subunit I [Escherichia coli IAI1]
 gi|218559194|ref|YP_002392107.1| NADH dehydrogenase subunit I [Escherichia coli S88]
 gi|218690441|ref|YP_002398653.1| NADH dehydrogenase subunit I [Escherichia coli ED1a]
 gi|218695880|ref|YP_002403547.1| NADH dehydrogenase subunit I [Escherichia coli 55989]
 gi|218700755|ref|YP_002408384.1| NADH dehydrogenase subunit I [Escherichia coli IAI39]
 gi|218705811|ref|YP_002413330.1| NADH dehydrogenase subunit I [Escherichia coli UMN026]
 gi|227887337|ref|ZP_04005142.1| NADH dehydrogenase subunit I [Escherichia coli 83972]
 gi|237704755|ref|ZP_04535236.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901456|ref|YP_002927252.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952]
 gi|253772797|ref|YP_003035628.1| NADH dehydrogenase subunit I [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162290|ref|YP_003045398.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606]
 gi|254794173|ref|YP_003079010.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017563|ref|ZP_05431428.1| NADH dehydrogenase subunit I [Shigella sp. D9]
 gi|256022035|ref|ZP_05435900.1| NADH dehydrogenase subunit I [Escherichia sp. 4_1_40B]
 gi|260844868|ref|YP_003222646.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2
           str. 12009]
 gi|260856325|ref|YP_003230216.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11
           str. 11368]
 gi|260869004|ref|YP_003235406.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H-
           str. 11128]
 gi|261223265|ref|ZP_05937546.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259185|ref|ZP_05951718.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283522|ref|YP_003500340.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405747|ref|ZP_06649739.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412]
 gi|293410641|ref|ZP_06654217.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415574|ref|ZP_06658217.1| NADH dehydrogenase I subunit I [Escherichia coli B185]
 gi|293446618|ref|ZP_06663040.1| NADH dehydrogenase I subunit I [Escherichia coli B088]
 gi|297518346|ref|ZP_06936732.1| NADH dehydrogenase subunit I [Escherichia coli OP50]
 gi|298381430|ref|ZP_06991029.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302]
 gi|300818119|ref|ZP_07098331.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1]
 gi|300822152|ref|ZP_07102294.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7]
 gi|300896955|ref|ZP_07115436.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1]
 gi|300903666|ref|ZP_07121582.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1]
 gi|300918554|ref|ZP_07135144.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1]
 gi|300924540|ref|ZP_07140504.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1]
 gi|300931366|ref|ZP_07146697.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1]
 gi|300936845|ref|ZP_07151734.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1]
 gi|300948575|ref|ZP_07162668.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1]
 gi|300956459|ref|ZP_07168748.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1]
 gi|300981077|ref|ZP_07175349.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1]
 gi|300983376|ref|ZP_07176560.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1]
 gi|301024079|ref|ZP_07187793.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1]
 gi|301026951|ref|ZP_07190344.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1]
 gi|301049034|ref|ZP_07196019.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1]
 gi|301303260|ref|ZP_07209385.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1]
 gi|301328773|ref|ZP_07221821.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1]
 gi|301647622|ref|ZP_07247418.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1]
 gi|306814608|ref|ZP_07448770.1| NADH dehydrogenase subunit I [Escherichia coli NC101]
 gi|307138945|ref|ZP_07498301.1| NADH dehydrogenase subunit I [Escherichia coli H736]
 gi|307311159|ref|ZP_07590803.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W]
 gi|309793160|ref|ZP_07687588.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7]
 gi|312973460|ref|ZP_07787632.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1827-70]
 gi|331642919|ref|ZP_08344054.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736]
 gi|331647936|ref|ZP_08349028.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605]
 gi|331653723|ref|ZP_08354724.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718]
 gi|331663795|ref|ZP_08364705.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143]
 gi|331668979|ref|ZP_08369827.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271]
 gi|331673786|ref|ZP_08374549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280]
 gi|331678227|ref|ZP_08378902.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591]
 gi|331683953|ref|ZP_08384549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299]
 gi|332278573|ref|ZP_08390986.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9]
 gi|84028753|sp|P0AFD8|NUOI_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028754|sp|P0AFD7|NUOI_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028755|sp|P0AFD6|NUOI_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028756|sp|P0AFD9|NUOI_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|110287772|sp|Q31YI0|NUOI_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502527|sp|Q1R9D6|NUOI_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123147879|sp|Q0TFG5|NUOI_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123342668|sp|Q0T2K6|NUOI_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633517|sp|A1ADC9|NUOI_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|12516631|gb|AAG57410.1|AE005460_4 NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. EDL933]
 gi|26109073|gb|AAN81276.1|AE016763_235 NADH dehydrogenase I chain I [Escherichia coli CFT073]
 gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. MG1655]
 gi|13362635|dbj|BAB36588.1| NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. Sakai]
 gi|24052717|gb|AAN43870.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 301]
 gi|30041962|gb|AAP17688.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 2457T]
 gi|81246170|gb|ABB66878.1| NADH dehydrogenase I chain I [Shigella boydii Sb227]
 gi|85675342|dbj|BAA16109.2| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K12
           substr. W3110]
 gi|91073147|gb|ABE08028.1| NADH dehydrogenase I chain I [Escherichia coli UTI89]
 gi|110344077|gb|ABG70314.1| NADH dehydrogenase I chain I [Escherichia coli 536]
 gi|110615792|gb|ABF04459.1| NADH dehydrogenase I chain I [Shigella flexneri 5 str. 8401]
 gi|115513594|gb|ABJ01669.1| NADH dehydrogenase I chain I [Escherichia coli APEC O1]
 gi|157067449|gb|ABV06704.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli HS]
 gi|157079585|gb|ABV19293.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E24377A]
 gi|169754338|gb|ACA77037.1| NADH-quinone oxidoreductase, chain I [Escherichia coli ATCC 8739]
 gi|169889733|gb|ACB03440.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123921|gb|EDS92852.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii
           TW07627]
 gi|170518794|gb|ACB16972.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli SMS-3-5]
 gi|187428661|gb|ACD07935.1| NADH-quinone oxidoreductase, I subunit [Shigella boydii CDC
           3083-94]
 gi|187771242|gb|EDU35086.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017199|gb|EDU55321.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188488883|gb|EDU63986.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638]
 gi|189002016|gb|EDU71002.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357566|gb|EDU75985.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362978|gb|EDU81397.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368249|gb|EDU86665.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372827|gb|EDU91243.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189379037|gb|EDU97453.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903434|gb|EDV63153.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A]
 gi|190909675|gb|EDV69260.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11]
 gi|192931901|gb|EDV84500.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22]
 gi|192958438|gb|EDV88877.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019]
 gi|194414797|gb|EDX31068.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171]
 gi|194418427|gb|EDX34516.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012]
 gi|194425082|gb|EDX41067.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1]
 gi|208725459|gb|EDZ75060.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208735358|gb|EDZ84045.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208738721|gb|EDZ86403.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160574|gb|ACI38007.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765138|gb|ACI80881.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765140|gb|ACI80882.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765142|gb|ACI80883.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765144|gb|ACI80884.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765146|gb|ACI80885.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209912988|dbj|BAG78062.1| NADH dehydrogenase I chain I [Escherichia coli SE11]
 gi|215265566|emb|CAS09969.1| NADH: ubiquinone oxidoreductase, chain I [Escherichia coli O127:H6
           str. E2348/69]
 gi|217319113|gb|EEC27538.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352612|emb|CAU98393.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli 55989]
 gi|218355811|emb|CAQ88424.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia fergusonii
           ATCC 35469]
 gi|218361605|emb|CAQ99197.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI1]
 gi|218365963|emb|CAR03707.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli S88]
 gi|218370741|emb|CAR18554.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI39]
 gi|218428005|emb|CAR08776.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli ED1a]
 gi|218432908|emb|CAR13802.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli UMN026]
 gi|222034037|emb|CAP76778.1| NadH-quinone oxidoreductase subunit I [Escherichia coli LF82]
 gi|226901121|gb|EEH87380.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835687|gb|EEJ46153.1| NADH dehydrogenase subunit I [Escherichia coli 83972]
 gi|238861872|gb|ACR63870.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952]
 gi|242377914|emb|CAQ32683.1| NADH:ubiquinone oxidoreductase, chain I, subunit of connecting
           fragment of NADH dehydrogenase I and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323841|gb|ACT28443.1| NADH-quinone oxidoreductase, chain I [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974191|gb|ACT39862.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606]
 gi|253978358|gb|ACT44028.1| NADH dehydrogenase subunit I [Escherichia coli BL21(DE3)]
 gi|254593573|gb|ACT72934.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. TW14359]
 gi|257754974|dbj|BAI26476.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11
           str. 11368]
 gi|257760015|dbj|BAI31512.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2
           str. 12009]
 gi|257765360|dbj|BAI36855.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H-
           str. 11128]
 gi|260448626|gb|ACX39048.1| NADH-quinone oxidoreductase, chain I [Escherichia coli DH1]
 gi|281179368|dbj|BAI55698.1| NADH dehydrogenase I chain I [Escherichia coli SE15]
 gi|281601722|gb|ADA74706.1| NADH-quinone oxidoreductase subunit I [Shigella flexneri 2002017]
 gi|284922269|emb|CBG35354.1| NADH-quinone oxidoreductase subunit I [Escherichia coli 042]
 gi|290763395|gb|ADD57356.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323448|gb|EFE62876.1| NADH dehydrogenase I subunit I [Escherichia coli B088]
 gi|291427955|gb|EFF00982.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412]
 gi|291433222|gb|EFF06201.1| NADH dehydrogenase I subunit I [Escherichia coli B185]
 gi|291471109|gb|EFF13593.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489898|gb|ADE88654.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli IHE3034]
 gi|298278872|gb|EFI20386.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302]
 gi|299879498|gb|EFI87709.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1]
 gi|300299143|gb|EFJ55528.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1]
 gi|300307690|gb|EFJ62210.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1]
 gi|300316729|gb|EFJ66513.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1]
 gi|300359223|gb|EFJ75093.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1]
 gi|300396735|gb|EFJ80273.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1]
 gi|300404322|gb|EFJ87860.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1]
 gi|300408542|gb|EFJ92080.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1]
 gi|300414289|gb|EFJ97599.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1]
 gi|300419258|gb|EFK02569.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1]
 gi|300451923|gb|EFK15543.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1]
 gi|300458032|gb|EFK21525.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1]
 gi|300460828|gb|EFK24321.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1]
 gi|300525282|gb|EFK46351.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7]
 gi|300529263|gb|EFK50325.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1]
 gi|300841434|gb|EFK69194.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1]
 gi|300844835|gb|EFK72595.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1]
 gi|301074249|gb|EFK89055.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1]
 gi|305852002|gb|EFM52454.1| NADH dehydrogenase subunit I [Escherichia coli NC101]
 gi|306908665|gb|EFN39162.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W]
 gi|307554343|gb|ADN47118.1| NADH dehydrogenase I chain I [Escherichia coli ABU 83972]
 gi|307626183|gb|ADN70487.1| NADH dehydrogenase subunit I [Escherichia coli UM146]
 gi|308123446|gb|EFO60708.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7]
 gi|309702593|emb|CBJ01921.1| NADH-quinone oxidoreductase subunit I [Escherichia coli ETEC
           H10407]
 gi|310332055|gb|EFP99290.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1827-70]
 gi|312946899|gb|ADR27726.1| NADH dehydrogenase subunit I [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651104|gb|EFS15503.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 2a str. 2457T]
 gi|315061573|gb|ADT75900.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli W]
 gi|315136915|dbj|BAJ44074.1| NADH-quinone oxidoreductase subunit I [Escherichia coli DH1]
 gi|315255215|gb|EFU35183.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 85-1]
 gi|315285919|gb|EFU45357.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 110-3]
 gi|315292246|gb|EFU51598.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 153-1]
 gi|315298120|gb|EFU57389.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 16-3]
 gi|320177163|gb|EFW52175.1| NADH-ubiquinone oxidoreductase chain I [Shigella dysenteriae CDC
           74-1112]
 gi|320178746|gb|EFW53709.1| NADH-ubiquinone oxidoreductase chain I [Shigella boydii ATCC 9905]
 gi|320183376|gb|EFW58228.1| NADH-ubiquinone oxidoreductase chain I [Shigella flexneri CDC
           796-83]
 gi|320192098|gb|EFW66743.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. EC1212]
 gi|320196148|gb|EFW70772.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli WV_060327]
 gi|320199869|gb|EFW74458.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli EC4100B]
 gi|320641108|gb|EFX10587.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. G5101]
 gi|320646496|gb|EFX15415.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. 493-89]
 gi|320651593|gb|EFX19973.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. H 2687]
 gi|320657345|gb|EFX25147.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663047|gb|EFX30364.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667865|gb|EFX34773.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. LSU-61]
 gi|323156431|gb|EFZ42586.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli EPECa14]
 gi|323161615|gb|EFZ47500.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli E128010]
 gi|323171962|gb|EFZ57606.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli LT-68]
 gi|323176794|gb|EFZ62384.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1180]
 gi|323184400|gb|EFZ69776.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1357]
 gi|323187994|gb|EFZ73289.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli RN587/1]
 gi|323377847|gb|ADX50115.1| NADH-quinone oxidoreductase, chain I [Escherichia coli KO11]
 gi|323936571|gb|EGB32858.1| NADH-quinone oxidoreductase [Escherichia coli E1520]
 gi|323941022|gb|EGB37209.1| NADH-quinone oxidoreductase [Escherichia coli E482]
 gi|323944794|gb|EGB40860.1| NADH-quinone oxidoreductase [Escherichia coli H120]
 gi|323952074|gb|EGB47948.1| NADH-quinone oxidoreductase [Escherichia coli H252]
 gi|323956047|gb|EGB51800.1| NADH-quinone oxidoreductase [Escherichia coli H263]
 gi|323961464|gb|EGB57074.1| NADH-quinone oxidoreductase [Escherichia coli H489]
 gi|323967722|gb|EGB63134.1| NADH-quinone oxidoreductase [Escherichia coli M863]
 gi|323973014|gb|EGB68208.1| NADH-quinone oxidoreductase [Escherichia coli TA007]
 gi|323977518|gb|EGB72604.1| NADH-quinone oxidoreductase [Escherichia coli TW10509]
 gi|324006669|gb|EGB75888.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 57-2]
 gi|324013179|gb|EGB82398.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 60-1]
 gi|324020877|gb|EGB90096.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 117-3]
 gi|324112813|gb|EGC06789.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253]
 gi|324117841|gb|EGC11740.1| NADH-quinone oxidoreductase [Escherichia coli E1167]
 gi|325496684|gb|EGC94543.1| NADH dehydrogenase subunit I [Escherichia fergusonii ECD227]
 gi|326339632|gb|EGD63443.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. 1125]
 gi|326344094|gb|EGD67855.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. 1044]
 gi|327252551|gb|EGE64210.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli STEC_7v]
 gi|330912106|gb|EGH40616.1| NADH-ubiquinone oxidoreductase chain 1 [Escherichia coli AA86]
 gi|331039717|gb|EGI11937.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736]
 gi|331043660|gb|EGI15798.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605]
 gi|331048572|gb|EGI20648.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718]
 gi|331059594|gb|EGI31571.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143]
 gi|331064173|gb|EGI36084.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271]
 gi|331069059|gb|EGI40451.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280]
 gi|331074687|gb|EGI46007.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591]
 gi|331078905|gb|EGI50107.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299]
 gi|332088411|gb|EGI93529.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           boydii 5216-82]
 gi|332090608|gb|EGI95704.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 155-74]
 gi|332093681|gb|EGI98739.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           boydii 3594-74]
 gi|332100925|gb|EGJ04271.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9]
 gi|332344062|gb|AEE57396.1| NADH-quinone oxidoreductase, chain I [Escherichia coli UMNK88]
 gi|332755330|gb|EGJ85694.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-671]
 gi|332756322|gb|EGJ86673.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 2747-71]
 gi|332766100|gb|EGJ96310.1| nuoI [Shigella flexneri 2930-71]
 gi|333001425|gb|EGK20993.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri VA-6]
 gi|333001967|gb|EGK21533.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-218]
 gi|333002648|gb|EGK22208.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-272]
 gi|333016230|gb|EGK35561.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-304]
 gi|333016532|gb|EGK35862.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-227]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|332830196|gb|EGK02824.1| NADH-quinone oxidoreductase subunit I [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 178

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 77  ERCTACGL--CALACPAEAITMVAAERKKGEEHLYREEKYAATYEINMLRCIFCGLCEDA 134

Query: 50  CPVDAIK 56
           CP +AI 
Sbjct: 135 CPKEAIF 141


>gi|303228707|ref|ZP_07315531.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-134-V-Col7a]
 gi|302516618|gb|EFL58536.1| 4Fe-4S binding domain protein [Veillonella atypica
          ACS-134-V-Col7a]
          Length = 271

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       EN        CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRCGL--CVADCPTGLLVMSENGPVTGKGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|302342004|ref|YP_003806533.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301638617|gb|ADK83939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 279

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C++  CV VCP    ++ E+ +  +    CI C  C   CP  
Sbjct: 129 CNHCQNPPCVRVCPTQATFKREDGIVMMDMHRCIGCRFCMAACPYG 174


>gi|294638102|ref|ZP_06716360.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
 gi|291088757|gb|EFE21318.1| thiosulfate reductase electron transport protein phsb [Edwardsiella
           tarda ATCC 23685]
          Length = 212

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C  C    C++VCP    Y  ++ L  I    C+ CG C   CP  A
Sbjct: 88  SCQHCDPAPCLDVCPSGATYRDQHGLIQIDAQRCLGCGYCISACPYQA 135


>gi|260887533|ref|ZP_05898796.1| dehydrogenase, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|330837912|ref|YP_004412492.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Selenomonas sputigena ATCC 35185]
 gi|260862708|gb|EEX77208.1| dehydrogenase, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|329745676|gb|AEB99032.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Selenomonas sputigena ATCC 35185]
          Length = 380

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECP 51
          E+C  C  T C  +CPV      EN   FL   ++   C+ CG C   CP
Sbjct: 8  ESCTGC--TACRHICPVSAITMRENSEGFLYPKVNESLCVHCGRCVQVCP 55



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
          + C  C  C   CPV AI         L+ K+N   
Sbjct: 8  ESCTGCTACRHICPVSAITMRENSEGFLYPKVNESL 43


>gi|291613271|ref|YP_003523428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sideroxydans lithotrophicus ES-1]
 gi|291583383|gb|ADE11041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sideroxydans lithotrophicus ES-1]
          Length = 84

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++TE CI C    C   CP     +GE+   + P +C +C        C   CPVD 
Sbjct: 1  MALMITEECINCDV--CEPECPNGALSQGEDRYIVDPGKCTECVGHFDTPQCIEVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IVQD 62


>gi|238923284|ref|YP_002936799.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656]
 gi|238874958|gb|ACR74665.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656]
          Length = 289

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  D+C +C  C   CP DA
Sbjct: 165 DDCIQCGV--CVKACREGALSMEDGRIVIDRDKCNNCARCVKSCPTDA 210



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C++    D   +G   +    D+CI CGVC   C   A+  + 
Sbjct: 143 NCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186


>gi|258576549|ref|XP_002542456.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237902722|gb|EEP77123.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 232

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 131 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 188

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 189 ESP----------NAEYATETREELLYNKEKLLANGDKWE 218


>gi|237732312|ref|ZP_04562793.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2]
 gi|283832289|ref|ZP_06352030.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC
           29220]
 gi|226907851|gb|EEH93769.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2]
 gi|291071934|gb|EFE10043.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC
           29220]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEY 125


>gi|209695456|ref|YP_002263385.1| cytochrome c-type biogenesis protein NrfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009408|emb|CAQ79684.1| cytochrome c-type biogenesis protein NrfC [Aliivibrio salmonicida
           LFI1238]
          Length = 228

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCENAPCVMVCPTGAAYKDEATGIVDVHNEKCVGCGYCLAACPYQ 145


>gi|158523129|ref|YP_001530999.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511955|gb|ABW68922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 392

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    CV  C ++ F   +    ++ D+CI CG+C   C   A+K
Sbjct: 303 CNGCG--KCVRRCQMNAFVVKDKMAVLNIDKCIGCGLCVTTCKTGALK 348


>gi|222054450|ref|YP_002536812.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563739|gb|ACM19711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 251

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 17/88 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CV  CPV              G   + ++  +CI CG C P CP  A   D
Sbjct: 79  PCMQCDKPPCVAACPVKGPDGATWKETKGIGNGIVPVNYAKCIGCGNCVPACPYQARTMD 138

Query: 59  T-------EPGLELWLKINS-EYATQWP 78
                    P L+++  + + EY  +WP
Sbjct: 139 DGSFHTAGTPQLQVYETLPAFEYGKKWP 166


>gi|325578318|ref|ZP_08148453.1| electron transport complex protein RnfB [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160054|gb|EGC72183.1| electron transport complex protein RnfB [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 194

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I  D C  C +C   CP D I
Sbjct: 102 AFIDENMCIGC--TKCIQACPVDAIIGTNKAMHTIIADLCTGCELCVAPCPTDCI 154



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 18  VEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           V+V  +D   E E  +  I  + CI C  C   CPVDAI
Sbjct: 86  VDVPAMDDVAEPEEMVAFIDENMCIGCTKCIQACPVDAI 124


>gi|317488732|ref|ZP_07947268.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912163|gb|EFV33736.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 207

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           M Y +T  C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 58  MRY-ITVGCQHCENPACTKVCPVGATYKDPETGVVRQDYDKCIGCRMCMAACPYT 111


>gi|317489727|ref|ZP_07948230.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830405|ref|ZP_08163862.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|316911193|gb|EFV32799.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487872|gb|EGC90310.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 209

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +   C  C   +CV+VCP    ++ E+    +   +CI C  C   CP +
Sbjct: 58  YFLPVQCQHCADPECVKVCPTGASHKLEDGTVQVDKSKCIGCQFCAMACPYN 109


>gi|302381047|ref|ZP_07269507.1| putative electron transport complex protein RnfC [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311094|gb|EFK93115.1| putative electron transport complex protein RnfC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 442

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 21/66 (31%)

Query: 7   ENCILCKHTDCVEVCPV------------DCFYEGENFLAIHPDECIDCGVCEPECP--- 51
           E CI C    CV+VCP+            +  +EG   + ++  +CI+CG C   CP   
Sbjct: 366 EPCIKC--AKCVDVCPIGLLPLFLQLKSLNGDFEGAEKMHLN--DCIECGTCSYICPSNR 421

Query: 52  --VDAI 55
             V+AI
Sbjct: 422 PLVEAI 427


>gi|302391035|ref|YP_003826855.1| hypothetical protein Acear_0240 [Acetohalobium arabaticum DSM 5501]
 gi|302203112|gb|ADL11790.1| protein of unknown function DUF362 [Acetohalobium arabaticum DSM
           5501]
          Length = 385

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIK 56
           ++C  C    C++ CP     E ++    +L I   EC  C  C+  CP DAI+
Sbjct: 320 QSCTQC--RTCLDSCPQQVIIEQQDGNNTYLEIDESECSKCLCCQEVCPFDAIE 371


>gi|262171714|ref|ZP_06039392.1| NrfC protein [Vibrio mimicus MB-451]
 gi|261892790|gb|EEY38776.1| NrfC protein [Vibrio mimicus MB-451]
          Length = 212

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCIAACPYQ 129


>gi|237752820|ref|ZP_04583300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Helicobacter winghamensis ATCC BAA-430]
 gi|229376309|gb|EEO26400.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Helicobacter winghamensis ATCC BAA-430]
          Length = 189

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C +C+HT CV VCP    +  EN +  I   +C+ C  C   CP +A
Sbjct: 58  SCEMCEHTPCVTVCPTHASFMDENGIVDIDASQCVGCLYCVVACPYNA 105



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----------VCEPECPVDAIKPD 58
           C+ C +  CV  CP +  Y         PD+C  C            C   CP DA+   
Sbjct: 91  CVGCLY--CVVACPYNARYVNPETKV--PDKCNFCKHTHLKQYGEPACVAVCPTDALVFG 146

Query: 59  TEPG 62
               
Sbjct: 147 DLDD 150


>gi|150375766|ref|YP_001312362.1| NADH-quinone oxidoreductase subunit I [Sinorhizobium medicae
           WSM419]
 gi|150030313|gb|ABR62429.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419]
          Length = 211

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C ++CP DC                   I    C+ CG+CE  CP DAI
Sbjct: 91  CVACEL--CAQICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 145


>gi|150008480|ref|YP_001303223.1| putative pyruvate formate-lyase 3 activating enzyme
           [Parabacteroides distasonis ATCC 8503]
 gi|149936904|gb|ABR43601.1| putative pyruvate formate-lyase 3 activating enzyme
           [Parabacteroides distasonis ATCC 8503]
          Length = 309

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK 
Sbjct: 59  IKNKCIGCG--RCEAICPRGNISIQDHFPVFNRQACVACKACERICPQNAIKF 109


>gi|118594444|ref|ZP_01551791.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
 gi|118440222|gb|EAV46849.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
          Length = 188

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  I   EC  C +C P CPVD I
Sbjct: 111 DTCIGC--TLCIQACPVDAILGSAKHMHTIIEKECTGCELCLPPCPVDCI 158



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D CI C +C   CPVDAI
Sbjct: 108 IDEDTCIGCTLCIQACPVDAI 128


>gi|57233532|ref|YP_180854.1| molybdopterin oxidoreductase, iron-sulfur binding subunit, putative
           [Dehalococcoides ethenogenes 195]
 gi|57223980|gb|AAW39037.1| molybdopterin oxidoreductase, iron-sulfur binding subunit, putative
           [Dehalococcoides ethenogenes 195]
          Length = 312

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  C +VCPV   F + +  + I    CI C  C   CP  A
Sbjct: 146 PCMHCDNPPCTKVCPVGATFKQPDGIVVIDYHRCIGCRFCIVACPYVA 193


>gi|88797606|ref|ZP_01113195.1| ferredoxin, 4Fe-4S [Reinekea sp. MED297]
 gi|88779778|gb|EAR10964.1| ferredoxin, 4Fe-4S [Reinekea sp. MED297]
          Length = 84

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    C   CP +  YEG+    I P  C +C        C+  CPVD 
Sbjct: 1  MALFITDECINCDV--CEPECPNNAIYEGDEIYEIDPTLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPND 62



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP +AI    E
Sbjct: 7  DECINCDVCEPECPNNAIYEGDE 29


>gi|332798931|ref|YP_004460430.1| putative PAS/PAC sensor protein [Tepidanaerobacter sp. Re1]
 gi|332696666|gb|AEE91123.1| putative PAS/PAC sensor protein [Tepidanaerobacter sp. Re1]
          Length = 573

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      ++   I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCIRACPVKAIRMKDDQAEIVDERCITCGTCLTICPQNA 54


>gi|312136412|ref|YP_004003749.1| cob--com heterodisulfide reductase subunit a [Methanothermus
           fervidus DSM 2088]
 gi|311224131|gb|ADP76987.1| CoB--CoM heterodisulfide reductase subunit A [Methanothermus
           fervidus DSM 2088]
          Length = 681

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENF---------------LAIHPDECIDCG 44
           YV  + C  C    C+EVCP++    F EG                    I+ D CI+C 
Sbjct: 267 YVDEDLCTGCG--SCIEVCPIEVPNYFDEGMGMSKAIYIPFPQAVPLCATINKDYCIECN 324

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C+  C   AIK D +P  
Sbjct: 325 LCDQVCERGAIKHDQKPEE 343



 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C  C    CVE+CP       E    +    C  CG C   CP  A+      
Sbjct: 603 ATVNEDICGGCGV--CVELCPFGAIELKEGKAHVTVALCKGCGTCAAACPSGAMDQKHFR 660

Query: 62  GLELWLKINSEY 73
             ++  +I +  
Sbjct: 661 TQQIMAQIEAAL 672


>gi|308186747|ref|YP_003930878.1| Electron transport complex protein rnfB [Pantoea vagans C9-1]
 gi|308057257|gb|ADO09429.1| Electron transport complex protein rnfB [Pantoea vagans C9-1]
          Length = 192

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 163


>gi|304397719|ref|ZP_07379596.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
 gi|304354891|gb|EFM19261.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
          Length = 192

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 110 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 163


>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
 gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
          Length = 597

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TY +T + C  C    CV+VCP      E +   AI+ ++CI C  C   C   AI+
Sbjct: 541 TYEITVDKCKGCGL--CVKVCPAGAITGERKQPHAINREKCIKCNSCFERCRFGAIE 595



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           CP     +      I  D+C  CG+C   CP  AI  + +        IN E
Sbjct: 531 CPAGA-CKALITYEITVDKCKGCGLCVKVCPAGAITGERKQPH----AINRE 577


>gi|293370175|ref|ZP_06616735.1| ferredoxin [Bacteroides ovatus SD CMC 3f]
 gi|292634672|gb|EFF53201.1| ferredoxin [Bacteroides ovatus SD CMC 3f]
          Length = 304

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P++C  C  C   CP ++I
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNSI 265



 Score = 40.5 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|257065432|ref|YP_003145104.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793085|gb|ACV23755.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 192

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKP 57
           C  C +  C  VCP    ++ +  L +H D  CI C  C   CP  A + 
Sbjct: 58  CNHCDNPACTAVCPTGAMFKNDEGLVLHDDNVCIGCQSCVNACPYSAPQY 107


>gi|237809387|ref|YP_002893827.1| NADH dehydrogenase subunit I [Tolumonas auensis DSM 9187]
 gi|259514790|sp|C4LB38|NUOI_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|237501648|gb|ACQ94241.1| NADH-quinone oxidoreductase, chain I [Tolumonas auensis DSM 9187]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAERVDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|221212642|ref|ZP_03585619.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD1]
 gi|221167741|gb|EEE00211.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD1]
          Length = 247

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|167901877|ref|ZP_02489082.1| ferredoxin [Burkholderia pseudomallei NCTC 13177]
          Length = 177

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|167623339|ref|YP_001673633.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4]
 gi|167353361|gb|ABZ75974.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4]
          Length = 410

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
          C  C    C + CP +   EG +     I+ ++C+ CG C   CP  AI
Sbjct: 22 CKGCD--ACQKFCPTNAI-EGASGAVHSINKEKCLSCGQCLINCPFGAI 67



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 28 EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E +  + I   +C  C  C+  CP +AI+
Sbjct: 10 EIQGLIEIQASKCKGCDACQKFCPTNAIE 38


>gi|149193850|ref|ZP_01870948.1| iron-sulfur cluster-binding protein CooF [Caminibacter
           mediatlanticus TB-2]
 gi|149135803|gb|EDM24281.1| iron-sulfur cluster-binding protein CooF [Caminibacter
           mediatlanticus TB-2]
          Length = 172

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C++  CVE CP+D      +++ I+ ++CI C  C   CP  A+     P
Sbjct: 63  CMQCENAPCVEACPIDIIKYEGDYVKIYEEDCIGCRSCAIVCPFGAVVMAESP 115


>gi|116251475|ref|YP_767313.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241204096|ref|YP_002975192.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115502540|sp|Q1MIK6|NUOI_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115256123|emb|CAK07204.1| putative NADH-quinone oxidoreductase subunit I [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857986|gb|ACS55653.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 163

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|90418463|ref|ZP_01226375.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
 gi|90338135|gb|EAS51786.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
          Length = 680

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T C++ CP        + + I    C  CG C   CP  A+  D     +
Sbjct: 286 TKCIDNCPPSAISPDGDNILIDTAICGGCGNCAAHCPTGAVSYDYPARAQ 335



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
           E C LC    CV  CP D   +      L      C+ CG+C   CP  AI  D
Sbjct: 520 ERCTLC--MACVSACPADALRDTPGKPELRFVEAACVQCGICAATCPETAITLD 571


>gi|88602962|ref|YP_503140.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88188424|gb|ABD41421.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 113

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 1  MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  +  + CI C    C +  CP+D   E +    +  D CI CGVC   CP  AI    
Sbjct: 20 MAQIDEDACIACG--ICRDERCPMDAIVEEDGEFQVLNDRCIGCGVCIITCPSKAITLIE 77

Query: 60 EPGLE 64
           P  E
Sbjct: 78 RPVQE 82



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 25 CFYEGENFLAIHPDECIDCGVCEPE-CPVDAIKPDT 59
             +      I  D CI CG+C  E CP+DAI  + 
Sbjct: 13 MIAKSNYMAQIDEDACIACGICRDERCPMDAIVEED 48


>gi|24374053|ref|NP_718096.1| electron transport complex protein RnfB [Shewanella oneidensis
           MR-1]
 gi|81744759|sp|Q8EE80|RNFB_SHEON RecName: Full=Electron transport complex protein rnfB
 gi|24348528|gb|AAN55540.1|AE015693_2 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 193

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTAD-CTGCDLCVEPCPVDCI 159


>gi|325292642|ref|YP_004278506.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3]
 gi|325060495|gb|ADY64186.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3]
          Length = 163

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 37.1 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|323498655|ref|ZP_08103647.1| hypothetical protein VISI1226_02972 [Vibrio sinaloensis DSM 21326]
 gi|323316353|gb|EGA69372.1| hypothetical protein VISI1226_02972 [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQ 145


>gi|320538846|ref|ZP_08038522.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
 gi|320031006|gb|EFW13009.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
          Length = 190

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            Y+   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 108 AYIDEANCIGC--TKCIQACPVDAIVGATGAMHTVIADLCTGCDLCVAPCPTDCIE 161


>gi|331685236|ref|ZP_08385822.1| putative electron transport protein YsaA [Escherichia coli H299]
 gi|331077607|gb|EGI48819.1| putative electron transport protein YsaA [Escherichia coli H299]
          Length = 157

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T+     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|296134475|ref|YP_003641722.1| sigma54 specific transcriptional regulator, Fis family
          [Thermincola sp. JR]
 gi|296033053|gb|ADG83821.1| sigma54 specific transcriptional regulator, Fis family
          [Thermincola potens JR]
          Length = 731

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 1  MTYV--VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+ V  ++E C  C    CV  CPV           I  + CI CG C   C   A K  
Sbjct: 1  MSVVTTISEKCQRC--YACVRNCPVKAIKVDRGQAKIIEERCIACGSCVRVCAQKAKKVA 58

Query: 59 TEPGLELWLKINSEYATQWPNITTKKESLPSA 90
          ++     +       A +   I     S P+A
Sbjct: 59 SDISKAEY-----FLAVEKEVIAIVAPSFPAA 85


>gi|291618182|ref|YP_003520924.1| NuoI [Pantoea ananatis LMG 20103]
 gi|291153212|gb|ADD77796.1| NuoI [Pantoea ananatis LMG 20103]
 gi|327394575|dbj|BAK11997.1| NADH-quinone oxidoreductase chain I NuoI [Pantoea ananatis AJ13355]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  KPDTEPGLELW 66
           +   +  L  +
Sbjct: 115 QLTPDFELGEF 125


>gi|295675947|ref|YP_003604471.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1002]
 gi|295435790|gb|ADG14960.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1002]
          Length = 301

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I
Sbjct: 87  CIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCI 132



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 81  VIDEQVCIGCTLCMQACPVDAI 102


>gi|229529443|ref|ZP_04418833.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
 gi|229333217|gb|EEN98703.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
          Length = 553

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|163868365|ref|YP_001609574.1| NADH dehydrogenase subunit I [Bartonella tribocorum CIP 105476]
 gi|240850591|ref|YP_002971991.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup]
 gi|189030923|sp|A9IUN3|NUOI_BART1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|161018021|emb|CAK01579.1| NADH dehydrogenase I chain I [Bartonella tribocorum CIP 105476]
 gi|240267714|gb|ACS51302.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup]
          Length = 163

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPV+AI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAI 118



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAICPAQAITIEAGP 84



 Score = 34.7 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPV+   EG NF
Sbjct: 103 CIYCGF--CQEACPVEAIVEGPNF 124


>gi|163794603|ref|ZP_02188574.1| DMSO reductase chain B [alpha proteobacterium BAL199]
 gi|159180327|gb|EDP64850.1| DMSO reductase chain B [alpha proteobacterium BAL199]
          Length = 271

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C+   CV VCP    Y  E +  + ++ D CI C +C   C   A + D E G
Sbjct: 90  SCLHCETPACVTVCPTGASYKREEDGIVLVNEDLCIGCKLCSWACAYGAREYDHEDG 146


>gi|114047406|ref|YP_737956.1| electron transport complex protein RnfB [Shewanella sp. MR-7]
 gi|123030634|sp|Q0HVF6|RNFB_SHESR RecName: Full=Electron transport complex protein rnfB
 gi|113888848|gb|ABI42899.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-7]
          Length = 193

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTAD-CTGCDLCVEPCPVDCI 159


>gi|332249710|ref|XP_003274000.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Nomascus leucogenys]
          Length = 217

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 116 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 172



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 116 ERCIACKLCEAICPAQAITIEAEPRAD 142



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 157 CIYCGF--CQEACPVDAIVEGPNF 178


>gi|324119155|gb|EGC13043.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
          Length = 184

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP     + P T+   
Sbjct: 52  QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVAD 111

Query: 64  ELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
           +      S  A  +P I  +  + P  A + G +   E
Sbjct: 112 KCDFCAESRLAKGFPPICVR--ACPEHALIFGREDSPE 147


>gi|261206240|ref|XP_002627857.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592916|gb|EEQ75497.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239610912|gb|EEQ87899.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327357611|gb|EGE86468.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 235

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 134 ERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 191

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 192 ESP----------NAEYATETREELLYNKEKLLANGDKWE 221


>gi|222148283|ref|YP_002549240.1| NADH dehydrogenase subunit I [Agrobacterium vitis S4]
 gi|254767831|sp|B9JVF4|NUOI_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|221735271|gb|ACM36234.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium vitis S4]
          Length = 163

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|218263700|ref|ZP_03477727.1| hypothetical protein PRABACTJOHN_03417 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222557|gb|EEC95207.1| hypothetical protein PRABACTJOHN_03417 [Parabacteroides johnsonii
           DSM 18315]
          Length = 268

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ T  CI C    C+++CP+  F   +  L      CI C +C   CP  +I 
Sbjct: 185 FLNTSTCINCG--KCIKICPMHIFALKDTVLPTDEKNCIQCRLCADNCPTSSIY 236


>gi|170683893|ref|YP_001745861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli SMS-3-5]
 gi|170521611|gb|ACB19789.1| 4Fe-4S binding domain protein [Escherichia coli SMS-3-5]
          Length = 157

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|147920950|ref|YP_685242.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured
          methanogenic archaeon RC-I]
 gi|110620638|emb|CAJ35916.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured
          methanogenic archaeon RC-I]
          Length = 95

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI CK   C + CP    +E      +    I+ D C  CGVC  ECPVDAI+   E 
Sbjct: 37 EKCIGCK--RCADSCPDGAPFECAHDGKKKKFCINYDYCKGCGVCAYECPVDAIEMVVEE 94


>gi|86749700|ref|YP_486196.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2]
 gi|115502514|sp|Q2IWX5|NUOI2_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|86572728|gb|ABD07285.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           HaA2]
          Length = 162

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|74312799|ref|YP_311218.1| NADH dehydrogenase subunit I [Shigella sonnei Ss046]
 gi|110287774|sp|Q3YZS9|NUOI_SHISS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|73856276|gb|AAZ88983.1| NADH dehydrogenase I chain I [Shigella sonnei Ss046]
 gi|323168550|gb|EFZ54230.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           sonnei 53G]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|34558142|ref|NP_907957.1| hydrogenase-3 small subunit [Wolinella succinogenes DSM 1740]
 gi|34483860|emb|CAE10857.1| HYDROGENASE-3 SMALL SUBUNIT [Wolinella succinogenes]
          Length = 216

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           C  C    C  VCP          + +  + CI C +C   CP  A  I+ +  P 
Sbjct: 54  CRQCDDAPCANVCPTGALRISNQTVELCEEICIGCKLCTIACPYGAVVIEAEVPPS 109


>gi|88811011|ref|ZP_01126267.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
 gi|88791550|gb|EAR22661.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
          Length = 277

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++    CI C  T C++ CPVD        +  +   EC  C +C   CPVD I 
Sbjct: 111 AWIDETACIGC--TRCIQACPVDAILGTAKQMHTVIRTECTGCALCIAPCPVDCIH 164


>gi|114563344|ref|YP_750857.1| electron transport complex protein RnfB [Shewanella frigidimarina
           NCIMB 400]
 gi|114334637|gb|ABI72019.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 193

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            I  D C  C +C   CPVD I
Sbjct: 108 AYIREDECIGC--TKCIQACPVDAILGAGKLMHTVIAKD-CTGCDLCVEPCPVDCI 160


>gi|322831991|ref|YP_004212018.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602]
 gi|321167192|gb|ADW72891.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602]
          Length = 180

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|319936762|ref|ZP_08011175.1| nitroreductase [Coprobacillus sp. 29_1]
 gi|319808319|gb|EFW04884.1| nitroreductase [Coprobacillus sp. 29_1]
          Length = 266

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEPG 62
          E CI C    C++ CP       +   AI   ECI CG C   CP +A+      D    
Sbjct: 20 EKCIGC--QMCIKDCPAHNIEFKDKKAAIIDKECIMCGHCVAICPKNAVIISGYTDHPII 77

Query: 63 LELWLKIN 70
           E  + +N
Sbjct: 78 REKDVNLN 85



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          + I+ ++CI C +C  +CP   I+   +   
Sbjct: 15 VIINKEKCIGCQMCIKDCPAHNIEFKDKKAA 45


>gi|300712347|ref|YP_003738161.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halalkalicoccus jeotgali B3]
 gi|299126030|gb|ADJ16369.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halalkalicoccus jeotgali B3]
          Length = 224

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI-KPDTEPGL 63
           C  C++  CV VCP +   + +N    +  D CI C  C   CP  A   P++  GL
Sbjct: 92  CYHCENAPCVSVCPTNALQKKDNGFVEVVDDLCIGCQYCLSACPFGAPQFPESNEGL 148



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 19/69 (27%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAI------HPDECIDCG---------VC 46
           VV + CI C++  C+  CP     F E    L          D+C  C           C
Sbjct: 119 VVDDLCIGCQY--CLSACPFGAPQFPESNEGLTAVVGSGGTMDKCTGCEERQDVGKGPAC 176

Query: 47  EPECPVDAI 55
             EC  DAI
Sbjct: 177 AEECATDAI 185


>gi|268324259|emb|CBH37847.1| conserved hypothetical protein, 4Fe-4S binding domain family
           [uncultured archaeon]
          Length = 154

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP--DTEP 61
           V  +C+ C   DCV +CPV    + E+ + +    +CI C +C   CP    +   D + 
Sbjct: 51  VAISCMHCSEPDCVAICPVTAITQREDGIVLGDKTKCIGCRLCVTACPFAVPQYPQDLQG 110

Query: 62  GLELW 66
            L  W
Sbjct: 111 DLAEW 115


>gi|258624435|ref|ZP_05719382.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM603]
 gi|258583282|gb|EEW08084.1| formate-dependent nitrite reductase complex, Fe-S protein [Vibrio
           mimicus VM603]
          Length = 212

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H + C+ CG C   CP  
Sbjct: 82  SCQHCENPPCVYVCPTGAAYKDEATGIVDVHKERCVGCGYCLAACPYQ 129


>gi|255527174|ref|ZP_05394059.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296186117|ref|ZP_06854522.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509129|gb|EET85484.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296049385|gb|EFG88814.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 273

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V TE CI C   +C++ C +           I+   CI CG C   CP +A+  D 
Sbjct: 1  MMNVNTEKCIGCG--ECIKDCFIRDIEMVNGKAKINNKTCIKCGHCIAICPKNAVSTDE 57


>gi|257063419|ref|YP_003143091.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256791072|gb|ACV21742.1| DMSO reductase, iron-sulfur subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 214

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPV 52
            Y V+  C  C +  CV  CP     +      +   P+ CI CG C   CP 
Sbjct: 60  AYHVSAACNHCANPACVANCPTGAMQKDPETGIVQSDPEVCIGCGTCANTCPY 112


>gi|224370292|ref|YP_002604456.1| putative NADPH-dependent glutamate synthase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693009|gb|ACN16292.1| putative NADPH-dependent glutamate synthase [Desulfobacterium
           autotrophicum HRM2]
          Length = 690

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           CI      C++ C       G      +  D+C+ CG C+  CP D I+
Sbjct: 137 CIGLGD--CIKACKFGALSMGPKGHPIVDDDKCVGCGACQKACPKDIIE 183


>gi|198283730|ref|YP_002220051.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666064|ref|YP_002426361.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248251|gb|ACH83844.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518277|gb|ACK78863.1| ferredoxin, putative [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 71

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    CV  CP +  + G     I PD C  C        C+  CPVD 
Sbjct: 1  MALFITDECIDC--AICVAECPNNAIFSGAKHCEIDPDRCTKCEGFFAKPQCQEVCPVDC 58

Query: 55 IKP 57
          I P
Sbjct: 59 ILP 61


>gi|188533913|ref|YP_001907710.1| electron transport complex protein RnfB [Erwinia tasmaniensis
           Et1/99]
 gi|226735419|sp|B2VEQ2|RNFB_ERWT9 RecName: Full=Electron transport complex protein rnfB
 gi|188028955|emb|CAO96821.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99]
          Length = 191

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 NCIGC--TKCIQACPVDAIVGATRAMHTVLSDICTGCDLCVAPCPTDCIE 162



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 111 IDEANCIGCTKCIQACPVDAI 131


>gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
 gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
          Length = 584

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V + C  C    C + CPV       +    I  + CI CG C   C  +AI+
Sbjct: 531 IVEDKCKGCG--ACKKKCPVSAISGNKKEAHVIDKNICIKCGKCMETCKFNAIE 582


>gi|126700741|ref|YP_001089638.1| putative nitroreductase [Clostridium difficile 630]
 gi|115252178|emb|CAJ70016.1| putative nitroreductase [Clostridium difficile]
          Length = 260

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 14 ELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 60



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 9  IEVDKELCIGCGLCKNDCPVNNIIIENKKS 38


>gi|114569913|ref|YP_756593.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10]
 gi|122316117|sp|Q0APY2|NUOI_MARMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114340375|gb|ABI65655.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10]
          Length = 162

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAEPRSDGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 117



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + EP
Sbjct: 61 ERCIACKLCEAICPAQAITIEAEP 84



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C +  C E CPVD   EG NF
Sbjct: 102 CIYCGY--CQEACPVDAIVEGPNF 123


>gi|158319129|ref|YP_001511636.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139328|gb|ABW17640.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
          Length = 592

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C++  CP   F +    + I   +C+ C VC   CPV AI
Sbjct: 540 EKCIGCK--MCIKTGCPALRFDKETKKVTIDKTQCVGCTVCLQVCPVKAI 587


>gi|92117735|ref|YP_577464.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14]
 gi|123265191|sp|Q1QL93|NUOI_NITHX RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91800629|gb|ABE63004.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14]
          Length = 162

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          P+   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGL--CQEACPVDAIVEGPNF 123


>gi|114045797|ref|YP_736347.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113887239|gb|ABI41290.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 182

 Score = 51.3 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           +C+ C +  C+  CP   +    + L + + D+C  CG+C   CP DA+
Sbjct: 60  SCMHCGNPACLIACPAQAYTVRSDGLVVLNRDKCTGCGLCVSACPYDAV 108


>gi|283768793|ref|ZP_06341704.1| 4Fe-4S binding domain protein [Bulleidia extructa W1219]
 gi|283104579|gb|EFC05952.1| 4Fe-4S binding domain protein [Bulleidia extructa W1219]
          Length = 288

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA-IKP 57
           TE CI CK   CV  CPV+ F   +N   +   P  CI C  C  +CPV A I P
Sbjct: 211 TEKCIGCK--RCVAACPVNMFAYIDNTIQMVREPKHCILCAECYHQCPVKAVIHP 263



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 31  NFLAIHPDECIDCGVCEPECPVD 53
             + I+ ++CI C  C   CPV+
Sbjct: 205 KKVTINTEKCIGCKRCVAACPVN 227


>gi|282165282|ref|YP_003357667.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
 gi|282157596|dbj|BAI62684.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
          Length = 94

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI CK   C + CP    YE      +    I  D C  CG+C  ECPVDAI  + E 
Sbjct: 36 EKCIGCK--RCADSCPDGAPYECAHDGKKKKFCIDYDYCKGCGICAYECPVDAINMEKEE 93


>gi|258404376|ref|YP_003197118.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796603|gb|ACV67540.1| membrane-bound menaquinol oxidoreductase, periplasmic ferredoxin
           subunit [Desulfohalobium retbaense DSM 5692]
          Length = 258

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    ++ E+ +  +    CI C  C   CP  A   +         
Sbjct: 121 CNHCDNPPCVRVCPTRATFQREDGIVMMDFHRCIGCRYCMAGCPFGARSFNFGDPRPHIE 180

Query: 68  KINSEYATQWPNITTKK 84
           + N+E+  +   +  K 
Sbjct: 181 EENTEFPARMKGVVEKC 197


>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
           [Pelotomaculum thermopropionicum SI]
          Length = 530

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CILC    C+EVC  V+  Y   +   +    CI+CG C   CP  AI  + +   ++
Sbjct: 91  QKCILCGQ--CLEVCKNVESVYGYYDLPVVDETICINCGQCSMACPSGAI-SERDDTKKV 147

Query: 66  WLKI 69
           +  +
Sbjct: 148 FEAL 151


>gi|21228736|ref|NP_634658.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei
           Go1]
 gi|20907247|gb|AAM32330.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei
           Go1]
          Length = 623

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 6   TENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TE+C  C    CV+   CP      GE    I  D C  CG+C   CP  AI
Sbjct: 568 TESCTGCGL--CVKQLGCPALFLPAGEEKPVIQ-DSCSGCGLCAQVCPSGAI 616


>gi|15888607|ref|NP_354288.1| NADH dehydrogenase subunit I [Agrobacterium tumefaciens str. C58]
 gi|81764054|sp|Q8UFW9|NUOI_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|15156329|gb|AAK87073.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium tumefaciens
           str. C58]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|117920613|ref|YP_869805.1| electron transport complex protein RnfB [Shewanella sp. ANA-3]
 gi|166225087|sp|A0KX80|RNFB_SHESA RecName: Full=Electron transport complex protein rnfB
 gi|117612945|gb|ABK48399.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. ANA-3]
          Length = 193

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTAD-CTGCDLCVEPCPVDCI 159


>gi|330448640|ref|ZP_08312288.1| putative electron transport protein HydN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492831|dbj|GAA06785.1| putative electron transport protein HydN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 182

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 2   TYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +V T   C  C    C +VCP +     + F+ +    CI C  C   CP  A
Sbjct: 50  AHVTTPVMCRQCDDAPCAQVCPNNAIVLEDGFVKVIQSRCIGCKTCVIACPYGA 103


>gi|325105659|ref|YP_004275313.1| NADH dehydrogenase subunit I [Pedobacter saltans DSM 12145]
 gi|324974507|gb|ADY53491.1| NADH dehydrogenase subunit I [Pedobacter saltans DSM 12145]
          Length = 175

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 19/78 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 72  ERCTACGL--CALSCPAEAITMISAERKKGEENLYREEKYAAVYEINMLRCIFCGLCEEA 129

Query: 50  CPVDAIKPDTEPGLELWL 67
           CP +AI  D       +L
Sbjct: 130 CPKEAIYLDGPIVPSDYL 147


>gi|331665199|ref|ZP_08366100.1| putative electron transport protein YsaA [Escherichia coli TA143]
 gi|331057709|gb|EGI29695.1| putative electron transport protein YsaA [Escherichia coli TA143]
          Length = 157

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T+     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|301020224|ref|ZP_07184346.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300398862|gb|EFJ82400.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
          Length = 157

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T+     C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 51  TWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|302694183|ref|XP_003036770.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8]
 gi|300110467|gb|EFJ01868.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8]
          Length = 236

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 135 ERCIACKL--CEAICPAQAITIESEARADGSRKTTKYDIDMIKCIYCGFCQEACPVDAI 191



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  ++E   +
Sbjct: 135 ERCIACKLCEAICPAQAITIESEARAD 161


>gi|298481058|ref|ZP_06999252.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. D22]
 gi|295083949|emb|CBK65472.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           xylanisolvens XB1A]
 gi|298272632|gb|EFI14199.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. D22]
          Length = 304

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P++C  C  C   CP ++I
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNSI 265



 Score = 40.5 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 579

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CI C    C +VCP      E      +   +C+ CG C   CP ++I
Sbjct: 524 SCIGCGQ--CAKVCPAKAISGEVRKPHVVDALKCVGCGQCMDICPTNSI 570



 Score = 40.5 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I+   CI CG C   CP  AI  +     
Sbjct: 520 INQGSCIGCGQCAKVCPAKAISGEVRKPH 548


>gi|254976689|ref|ZP_05273161.1| putative nitroreductase [Clostridium difficile QCD-66c26]
 gi|255094072|ref|ZP_05323550.1| putative nitroreductase [Clostridium difficile CIP 107932]
 gi|255518484|ref|ZP_05386160.1| putative nitroreductase [Clostridium difficile QCD-97b34]
 gi|255651604|ref|ZP_05398506.1| putative nitroreductase [Clostridium difficile QCD-37x79]
 gi|306521411|ref|ZP_07407758.1| putative nitroreductase [Clostridium difficile QCD-32g58]
          Length = 258

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 12 ELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 58



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 7  IEVDKELCIGCGLCKNDCPVNNIIIENKKS 36


>gi|209363825|ref|YP_001423965.2| NADH dehydrogenase subunit I [Coxiella burnetii Dugway 5J108-111]
 gi|215919184|ref|NP_820423.2| NADH dehydrogenase subunit I [Coxiella burnetii RSA 493]
 gi|206584068|gb|AAO90937.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii RSA 493]
 gi|207081758|gb|ABS78476.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii Dugway
           5J108-111]
          Length = 168

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        G              I   +CI+CG CE  CPVDAI
Sbjct: 66  ERCIACKL--CEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAI 123



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 66 ERCIACKLCEAVCPACAITIEAGP 89


>gi|157144788|ref|YP_001452107.1| NADH dehydrogenase subunit I [Citrobacter koseri ATCC BAA-895]
 gi|157081993|gb|ABV11671.1| hypothetical protein CKO_00515 [Citrobacter koseri ATCC BAA-895]
          Length = 180

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|150399059|ref|YP_001322826.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150011762|gb|ABR54214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 165

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 2  TYVVTENCILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T+ V   C+ C      C +VCPVD   E E  L ++ D CI C +C   CP+ A
Sbjct: 34 THSVPMFCMHCHPDKAPCRQVCPVDAIEEMEGVLIVNEDACILCRLCMIACPIGA 88


>gi|117926901|ref|YP_867518.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1]
 gi|156633523|sp|A0LDR9|NUOI_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117610657|gb|ABK46112.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1]
          Length = 164

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA----IHPDECIDCGVCEPECPVDAI 55
           E C+ CK   C  +CP    Y         +  L     I   +CI CG+CE  CPV+AI
Sbjct: 62  ERCVACKL--CEAICPAQAIYIEIDTESRADKRLTKVYDIDLFKCIYCGLCEEACPVEAI 119

Query: 56  KPDTEPGLELWLKINSEYATQ 76
                  +  +   N+ +  +
Sbjct: 120 VMGPYLDM-AYEDRNARFYKK 139


>gi|56476886|ref|YP_158475.1| electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
 gi|56312929|emb|CAI07574.1| Electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
          Length = 176

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI-KPDTEPGLE 64
           E CI C  T C++VCP D    G   +  +  D C  CG C   CP +A+        L+
Sbjct: 108 EICIGC--TRCIKVCPTDAILGGPKQIHNVLRDACTGCGSCIERCPTEAMAMQPLPVTLQ 165

Query: 65  LWL 67
            W+
Sbjct: 166 QWV 168



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAI 55
           EG    +I  + CI C  C   CP DAI
Sbjct: 98  EGPKVASIREEICIGCTRCIKVCPTDAI 125


>gi|312963650|ref|ZP_07778131.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
          WH6]
 gi|311282159|gb|EFQ60759.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
          WH6]
          Length = 83

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNAAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D       
Sbjct: 59 IPLDEAHPETQ 69


>gi|297516469|ref|ZP_06934855.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           OP50]
          Length = 268

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP       ++ + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFG 100


>gi|213645876|ref|ZP_03375929.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 180

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEY 125


>gi|167624839|ref|YP_001675133.1| dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
 gi|167354861|gb|ABZ77474.1| Dimethylsulfoxide reductase chain B [Shewanella halifaxensis
           HAW-EB4]
          Length = 221

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  D CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQDLCIGCESCSRACPYDAPQIDR 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|17545110|ref|NP_518512.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17427401|emb|CAD13919.1| probable ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 82

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVEC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPND 62


>gi|126439611|ref|YP_001058225.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126219104|gb|ABN82610.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 668]
          Length = 290

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVVELCTGCDLCVPPCPVDCI 132


>gi|317492085|ref|ZP_07950516.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919968|gb|EFV41296.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 202

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 115 ENCIGC--TKCIQACPVDAIVGATRAMHTVVSDLCTGCNLCVAPCPTDCI 162



 Score = 37.1 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + CI C  C   CPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|238790316|ref|ZP_04634089.1| Protein nrfC [Yersinia frederiksenii ATCC 33641]
 gi|238721580|gb|EEQ13247.1| Protein nrfC [Yersinia frederiksenii ATCC 33641]
          Length = 212

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    Y  +    + + PD C+ C  C   CP 
Sbjct: 80  SCQHCDKAPCVDVCPTGASYRDKKTGIVDVDPDLCVGCQYCIAACPY 126


>gi|255308110|ref|ZP_05352281.1| putative nitroreductase [Clostridium difficile ATCC 43255]
          Length = 258

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 12 ELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAI 58



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 7  IEVDKELCIGCGLCKNDCPVNNIIIENKKS 36


>gi|217967483|ref|YP_002352989.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336582|gb|ACK42375.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 266

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
              DCV+ CP D  + GE+ L  I  ++C  CG+C   CP
Sbjct: 144 GFGDCVKACPFDAIHMGEDGLPKIDMEKCTGCGLCVKACP 183



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V ++ CI C    C +VCP         F  I  + C  CG+C  +CP  A
Sbjct: 212 VCSKACIGCG--ICEKVCPKGAIKMDGRFPVIDYNLCDGCGICVEKCPTKA 260



 Score = 40.5 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 18/68 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCEPEC 50
           E C  C    CV+ CP                      G     +    CI CG+CE  C
Sbjct: 170 EKCTGCGL--CVKACPRGILTLLPVDIPLLLGCKTELPGPEARRVCSKACIGCGICEKVC 227

Query: 51  PVDAIKPD 58
           P  AIK D
Sbjct: 228 PKGAIKMD 235


>gi|169824043|ref|YP_001691654.1| electron transport complex protein [Finegoldia magna ATCC 29328]
 gi|167830848|dbj|BAG07764.1| electron transport complex protein [Finegoldia magna ATCC 29328]
          Length = 442

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 21/66 (31%)

Query: 7   ENCILCKHTDCVEVCPV------------DCFYEGENFLAIHPDECIDCGVCEPECP--- 51
           E CI C    CV+VCP+            +  +EG   + ++  +CI+CG C   CP   
Sbjct: 366 EPCIKC--AKCVDVCPIGLLPLFLQLKSLNGDFEGAEKMHLN--DCIECGTCSYICPSNR 421

Query: 52  --VDAI 55
             V+AI
Sbjct: 422 PLVEAI 427


>gi|254286422|ref|ZP_04961380.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
 gi|150423589|gb|EDN15532.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
          Length = 553

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG       + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|158522522|ref|YP_001530392.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158511348|gb|ABW68315.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 672

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 10  ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + C     CV  CP      GEN L  +  ++C  CG CE  CP   IK
Sbjct: 141 VGCLGLGTCVRACPFGALTMGENGLPVVDREKCTGCGTCERVCPKHIIK 189


>gi|134046740|ref|YP_001098225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664365|gb|ABO36011.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 395

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT+ C+ C    CV  CPVD     E+   I  D+CI C VC   CP +AI 
Sbjct: 128 VTKECVACGV--CVPECPVDAISL-EDIAVIDTDKCIYCTVCSQTCPWNAIF 176



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C+   CVEVCP     Y  ++     P  C  CG+C   CPV+ I  + E
Sbjct: 194 VNEEECIGCE--KCVEVCPGSMIEYNAKDLGVNLPLACPACGLCVESCPVEVISLEVE 249



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 14/63 (22%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDE-------CIDCGVCEPECPVDAIK 56
           C+LC+   CV++CP +        E      + P E       C+ CGVC PECPVDAI 
Sbjct: 91  CVLCE--KCVDICPAEIISLPGKVEKPKKEVVIPQEPIAVTKECVACGVCVPECPVDAIS 148

Query: 57  PDT 59
            + 
Sbjct: 149 LED 151



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           T+ CI C  T C + CP +  +                 ++ +ECI C  C   CP   I
Sbjct: 157 TDKCIYC--TVCSQTCPWNAIFVAGKVPQKRQKTIKSFTVNEEECIGCEKCVEVCPGSMI 214

Query: 56  KPDTEP 61
           + + + 
Sbjct: 215 EYNAKD 220



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C    CVE CPV+               +  L    ++C  CG C  +CP  AIK 
Sbjct: 228 ACPACGL--CVESCPVEVISLEVEYASAKPVTDEGLVWLEEKCAYCGPCAIKCPTGAIKV 285

Query: 58  DTEPGLEL 65
               GLEL
Sbjct: 286 VNPKGLEL 293



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C++C    C + CP +               CI C  C   CP  A
Sbjct: 9  DACLVCN--ACAKACPTEAIEIAPFK------TCIQCFSCANACPTGA 48


>gi|10945077|emb|CAC14151.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 210

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC                   I    C+ CG+CE  CP DAI
Sbjct: 90  CVACEL--CARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 144


>gi|85860212|ref|YP_462414.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
 gi|85723303|gb|ABC78246.1| formate dehydrogenase iron-sulfur subunit [Syntrophus
           aciditrophicus SB]
          Length = 263

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C +  CV+VCP    +  E     ++ + CI C  C   CP +  + D E  
Sbjct: 72  DGCMHCTNAACVKVCPSGALHYTEVGTVGLNHELCIGCKECVSACPFNIPRYDRETD 128


>gi|42520793|ref|NP_966708.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034611|ref|ZP_01314569.1| hypothetical protein Wendoof_01000619 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81652312|sp|Q73GH4|NUOI_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|42410533|gb|AAS14642.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 169

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 68  ERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMIKCIYCGLCQEACPVDAI 124



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 68 ERCIACKLCEVICPAQAIVIEAEERED 94



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 109 CIYCGL--CQEACPVDAIVEGPNF 130


>gi|51893738|ref|YP_076429.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857427|dbj|BAD41585.1| formate dehydrogenase beta subunit [Symbiobacterium thermophilum
           IAM 14863]
          Length = 263

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C    C  VC         N    I  D+CI C  C+  CP    K + +  
Sbjct: 73  CMHCLEPACESVCIAGAIKRQANGAVTIDHDKCIGCRYCQLGCPFGVPKYEYDKP 127


>gi|148264539|ref|YP_001231245.1| glutamate synthase (NADPH) [Geobacter uraniireducens Rf4]
 gi|146398039|gb|ABQ26672.1| glutamate synthase (NADPH) GltB2 subunit [Geobacter
          uraniireducens Rf4]
          Length = 509

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 9  CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          CI CK   C+  C  +   + + ++ L      CI C  C   CP  AI           
Sbjct: 22 CIRCKV--CIRQCAYEVHSYIDADDVLVEDSTSCIGCRRCSALCPTGAIT---------- 69

Query: 67 LKINSEYATQ 76
          +++N E   +
Sbjct: 70 IRLNEENFKK 79


>gi|332526726|ref|ZP_08402828.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
 gi|332111129|gb|EGJ11161.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
          Length = 219

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVDC           I    C  CG+C P CPVD I
Sbjct: 85  CIGC--TLCLKACPVDCIVGANKRMHTVIDA-LCTGCGLCLPACPVDCI 130


>gi|283853033|ref|ZP_06370290.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283571570|gb|EFC19573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 652

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 27/86 (31%), Gaps = 26/86 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV  E C  C    C E CP     D F E                     I P  C  
Sbjct: 235 TYVDWELCTGCG--ACTEKCPSKKNPDAFNEKIGPTTSINIPFPQAIPKKAVIDPTTCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPGL 63
                CGVC   CP  AI+ D    L
Sbjct: 293 FVKGKCGVCAKVCPTGAIRYDMTDEL 318



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C+  CP     E    G+    +    C  CG+C   CP  AI+       +
Sbjct: 584 CVGCG--KCIITCPFKAIKEVEFRGQKKAEVIETVCQGCGLCTSTCPQGAIQLSHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648


>gi|322419348|ref|YP_004198571.1| hypothetical protein GM18_1832 [Geobacter sp. M18]
 gi|320125735|gb|ADW13295.1| hypothetical protein GM18_1832 [Geobacter sp. M18]
          Length = 222

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   CV  CP++  ++  N + +   D+C   G C P CP  A   D   G
Sbjct: 90  CNHCEDPRCVPACPLEATFKLPNGIVVTDWDKCEGYGACVPACPYGARFLDERHG 144


>gi|308234259|ref|ZP_07664996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           vaginae DSM 15829]
 gi|328943810|ref|ZP_08241275.1| hypothetical protein HMPREF0091_10500 [Atopobium vaginae DSM 15829]
 gi|327491779|gb|EGF23553.1| hypothetical protein HMPREF0091_10500 [Atopobium vaginae DSM 15829]
          Length = 438

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C    C++VCPVD   + +       D C  CG+C   CP +A
Sbjct: 78  CTCHACMDVCPVDAI-DIKGSTVKIADTCRACGLCIAACPTEA 119



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
            C +C  + C  VCPV+     E+   ++    C++C  C   CP   I
Sbjct: 335 ACTVC--SACTRVCPVNACNLDEHGRFSVQTAYCVNCSACALVCPEQCI 381


>gi|225026051|ref|ZP_03715243.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
 gi|224956626|gb|EEG37835.1| hypothetical protein EUBHAL_00290 [Eubacterium hallii DSM 3353]
          Length = 304

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C+ C    C+E+CP        N + I+P  C  C  C  ECP  A++ + E 
Sbjct: 59  EKCVRC--HHCMEICPKKAITFFSNEIKINPYICNGCQKCIEECPARALQAEGEE 111


>gi|124028230|ref|YP_001013550.1| hypothetical protein Hbut_1380 [Hyperthermus butylicus DSM 5456]
 gi|123978924|gb|ABM81205.1| hypothetical protein Hbut_1380 [Hyperthermus butylicus DSM 5456]
          Length = 342

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECI-----DCGVCEPECPVD 53
           T  C LC   +CV+VCP     E           I PD C+     DC  C   CP  
Sbjct: 157 TNPCTLC--MECVKVCPTGALAETPEDGVSGVAIIDPDLCLAWNSGDCKSCAKACPYG 212


>gi|313682655|ref|YP_004060393.1| hypothetical protein Sulku_1531 [Sulfuricurvum kujiense DSM
          16994]
 gi|313155515|gb|ADR34193.1| hypothetical protein Sulku_1531 [Sulfuricurvum kujiense DSM
          16994]
          Length = 124

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCF-YEGE------NFLAIHPDECIDCG------VCE 47
          M  ++T+ CI C    C+EVCPV     EG+       +  + P++CI+C        C 
Sbjct: 1  MAVMITDLCINCD--ACIEVCPVSAIVSEGDSPRDDWEYTYVKPEKCIECVGHAEVPACA 58

Query: 48 PECPVD-AIKPDTE 60
           ECP +  I  D  
Sbjct: 59 AECPTEGCIVWDMP 72



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
             +  D CI+C  C   CPV AI  + +   + W
Sbjct: 1  MAVMITDLCINCDACIEVCPVSAIVSEGDSPRDDW 35


>gi|300691033|ref|YP_003752028.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           PSI07]
 gi|299078093|emb|CBJ50736.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           PSI07]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDLRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 62 ERCIACKLCEAVCPALAITIESD 84


>gi|170766578|ref|ZP_02901031.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170124016|gb|EDS92947.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 157

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T+     C  C+   C  VCPV         + +    CI C  C   CP  A++
Sbjct: 51  TWTTAVACHQCEDAPCANVCPVGAIRREHEHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|159043051|ref|YP_001531845.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157910811|gb|ABV92244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 672

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  E C LC    C  VCP     +      L      C+ CG+C   CP  AI    + 
Sbjct: 518 VDPEACTLC--QACTGVCPTGALLDNPETPMLRFTESACVQCGLCAATCPETAITLTPQL 575

Query: 62  GLELW 66
               W
Sbjct: 576 DFAAW 580



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP 48
           T C+ +CP        + + I P  C  CG C  
Sbjct: 288 TRCLSLCPTGAITPNGDSVQIDPAICAGCGQCAA 321



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           + P+ C  C  C   CP  A+  + E  +  + +
Sbjct: 518 VDPEACTLCQACTGVCPTGALLDNPETPMLRFTE 551


>gi|73540045|ref|YP_294565.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha
          JMP134]
 gi|72117458|gb|AAZ59721.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha
          JMP134]
          Length = 86

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +    G     I P++C +C        C+  CPV  
Sbjct: 1  MALLITDDCINCDV--CEPECPNEAISMGPEIYEIDPNKCTECVGHFDEPQCQQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|26250216|ref|NP_756256.1| putative electron transport protein ysaA [Escherichia coli CFT073]
 gi|293417021|ref|ZP_06659658.1| electron transporter HydN [Escherichia coli B185]
 gi|331649404|ref|ZP_08350490.1| putative electron transport protein YsaA [Escherichia coli M605]
 gi|26110645|gb|AAN82830.1|AE016768_248 Putative electron transport protein ysaA [Escherichia coli CFT073]
 gi|291431597|gb|EFF04582.1| electron transporter HydN [Escherichia coli B185]
 gi|331041902|gb|EGI14046.1| putative electron transport protein YsaA [Escherichia coli M605]
          Length = 159

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 107


>gi|157163051|ref|YP_001460369.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli HS]
 gi|312972149|ref|ZP_07786323.1| iron-sulfur protein [Escherichia coli 1827-70]
 gi|157068731|gb|ABV07986.1| 4Fe-4S binding domain protein [Escherichia coli HS]
 gi|310334526|gb|EFQ00731.1| iron-sulfur protein [Escherichia coli 1827-70]
 gi|332345542|gb|AEE58876.1| iron-sulfur protein [Escherichia coli UMNK88]
          Length = 157

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD     +  + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREQGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|303242581|ref|ZP_07329058.1| putative PAS/PAC sensor protein [Acetivibrio cellulolyticus CD2]
 gi|302589885|gb|EFL59656.1| putative PAS/PAC sensor protein [Acetivibrio cellulolyticus CD2]
          Length = 556

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 1  MT-YVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--I 55
          MT Y+VT   NC  C    C+  CPV      +    I  DEC+ CG C   CP +A  I
Sbjct: 1  MTEYLVTKNSNCKNC--YKCIRHCPVKSLKFTDGQAHIVKDECVLCGECYVVCPQNAKQI 58

Query: 56 KPDTEPGLEL 65
          + D E   +L
Sbjct: 59 RQDVEKAKQL 68


>gi|301064114|ref|ZP_07204561.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
           protein [delta proteobacterium NaphS2]
 gi|300441734|gb|EFK06052.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
           protein [delta proteobacterium NaphS2]
          Length = 912

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V TE C +C    CV  CP              I    C  CG+C  ECP  AI 
Sbjct: 840 VNTEKCAVC--CTCVRTCPFQIPVIDREIGAAFIDASLCRGCGMCVAECPGKAIF 892


>gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1]
 gi|300073735|gb|ADJ63134.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDT- 59
           V+ E  CI C  T C++ CPVD        +   I    C  C +C   CPVD I     
Sbjct: 86  VIDEAVCIGC--TLCIQACPVDAIAGAAKQMHTVIDA-LCTGCDLCVAPCPVDCISMVEV 142

Query: 60  ---EPGLELWLKINSEYAT 75
                G + W +  ++ A 
Sbjct: 143 TPGRTGWQAWRQEQADAAR 161


>gi|294496337|ref|YP_003542830.1| electron transport complex, RnfABCDGE type subunit beta
           [Methanohalophilus mahii DSM 5219]
 gi|292667336|gb|ADE37185.1| electron transport complex, RnfABCDGE type, B subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 265

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CPVD  +  +    I  ++CI CG C  +CP   I+
Sbjct: 218 CIGCKL--CEKACPVDAVHVTKFLAEIDQEKCISCGKCVEKCPQGCIE 263



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           CV VCP D  + G++ L  I+ + C  CG+C   CP D
Sbjct: 149 CVRVCPFDAIHIGDDRLPKINKNLCTSCGICIASCPND 186


>gi|296109959|ref|YP_003616908.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434773|gb|ADG13944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 365

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YVV  E+CI C    C +VC        +      I PD+CI CG+CE ECPVD IK   
Sbjct: 265 YVVLEEDCIGC--RACYKVCKFGAITISKKTKLPYILPDKCIVCGLCERECPVDTIKLVN 322

Query: 60  EPGLELWLKI 69
               +   KI
Sbjct: 323 IDEAKKMAKI 332



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            ++V   CI C   +CVEVCP +   E    +      C++C  C   CP  AI+   EP
Sbjct: 204 PHIVKSLCIACL--NCVEVCPGEIDIEKGEII-----SCLNCFYCLEVCPTTAIRVRKEP 256

Query: 62  GLELWLK 68
             +  +K
Sbjct: 257 IAKEKVK 263



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 17/65 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGE-------NFLAIHPDECIDCGVCEPECP 51
           ++CI C   +CVEVCP             EG+       ++L I  + C +CG CE  CP
Sbjct: 77  DSCIACL--NCVEVCPTGVLELDKHRVSVEGQPFSVPKFHYLQIDEEVCANCGKCERACP 134

Query: 52  VDAIK 56
           +  I 
Sbjct: 135 IGVIH 139



 Score = 41.3 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGL 63
           E C  C    C   CP+   ++ E    I  + CI C  C   CP+ +AI   TE  +
Sbjct: 121 EVCANCG--KCERACPIGVIHKTEKAYKIDVERCITCKRCLEVCPLKNAIVVFTEEEM 176



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPD 58
          E CI C+   C E CP       E       I  D CI C  C   CP   ++ D
Sbjct: 45 EKCISCE--ACKESCPAKAIEMVEREKKIPNIEVDSCIACLNCVEVCPTGVLELD 97



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C+ C +  C+EVCP             E      +  ++CI C  C   C   AI
Sbjct: 234 SCLNCFY--CLEVCPTTAIRVRKEPIAKEKVKCYVVLEEDCIGCRACYKVCKFGAI 287


>gi|257062986|ref|YP_003142658.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790639|gb|ACV21309.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           T +C  C    C + CP    ++ E+ L +   D+CI C  C   CP  
Sbjct: 64  TVSCQHCDDPACAKACPTGATHKREDGLVVQDYDKCIGCRNCMIACPYT 112


>gi|168818961|ref|ZP_02830961.1| anaeroBic dimethyl sulfoxide reductase chain b [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205343944|gb|EDZ30708.1| anaeroBic dimethyl sulfoxide reductase chain b [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320084704|emb|CBY94495.1| probable anaerobic dimethyl sulfoxide reductase chain ynfG DMSO
           reductase iron-sulfur subunit ynfG [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 182

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
            ++ +C  C    C++VCP   + +  + + +   + CI C +C   CP  A   D + G
Sbjct: 52  FISMSCNHCDDPQCMKVCPAGTYTKRADGIVVQDHERCIGCRMCIMACPWSAPVYDPQEG 111


>gi|164688323|ref|ZP_02212351.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM
           16795]
 gi|164602736|gb|EDQ96201.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM
           16795]
          Length = 421

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E+C+ C    C + CP+D         G   + I  D C+ CGVC   C   +I
Sbjct: 287 VNDESCVKCG--KCEKACPIDAISLIKDENGNKKVDIDYDVCLGCGVCARNCHKGSI 341


>gi|149922403|ref|ZP_01910837.1| Carbamoyltransferase [Plesiocystis pacifica SIR-1]
 gi|149816765|gb|EDM76255.1| Carbamoyltransferase [Plesiocystis pacifica SIR-1]
          Length = 1175

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY------EGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +V    C+      CV +CP           EG   L  I    C+ C +C   C V+A+
Sbjct: 514 WVDESRCVGSGD--CVRICPTGAVSFAEPSSEGARRLPVIDASACVRCQLCVERCEVEAL 571

Query: 56  KP 57
           +P
Sbjct: 572 RP 573


>gi|124028304|ref|YP_001013624.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM
           5456]
 gi|123978998|gb|ABM81279.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM
           5456]
          Length = 632

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           VV E C  C    CV+V  CP    Y  E+    I  ++C  CG+C   CP  AI
Sbjct: 574 VVPEKCTSC--MACVKVTGCP--ALYVTEDGKVGIVEEDCTGCGLCARFCPYGAI 624


>gi|52548771|gb|AAU82620.1| heterodisulfide reductase subunit A and related polyferredoxins
           [uncultured archaeon GZfos18F2]
          Length = 928

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +V    C  C    CV +CP     F E      I    C  CG+C   C   AI    
Sbjct: 852 AHVDAAACSSCGV--CVSICPYSAPRFNEKTGRAEIESALCKGCGLCTASCRSGAIHLSG 909

Query: 60  EPGLELWLKI 69
               +++ +I
Sbjct: 910 FDNDQVFSQI 919



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 25/82 (30%), Gaps = 25/82 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECI--- 41
           YV T  CI C    C E CP     E +  L                   I  D CI   
Sbjct: 21  YVDTTKCIACGL--CAEKCPKKVPNEYDGGLSKRKAIYVKYPQAVPLKYVIDRDHCIFFK 78

Query: 42  --DCGVCEPECPVDAIKPDTEP 61
              C  CE  CP  A+  D   
Sbjct: 79  KGKCRACEKFCPSGAVNFDDSE 100


>gi|78187016|ref|YP_375059.1| ferredoxin [Chlorobium luteolum DSM 273]
 gi|78166918|gb|ABB24016.1| Electron transport complex, RnfABCDGE type, B subunit [Chlorobium
           luteolum DSM 273]
          Length = 277

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI      C+  C  +        + I  D C  CG C P CP   +    +    +++
Sbjct: 142 SCIGLG--SCIAWCDFNAMRIENGLIVIDSDLCTGCGACIPACPTGVLVMQDKKADRIFI 199

Query: 68  KIN 70
             N
Sbjct: 200 ACN 202



 Score = 41.3 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           CI C    CV+ CP       +    I  ++C  CG C   CP 
Sbjct: 218 CIAC--QKCVKECPEQAIVIEDFVARIIQEKCTSCGKCIEVCPT 259


>gi|83590235|ref|YP_430244.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573149|gb|ABC19701.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 182

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
           Y ++  C  C    CV  CP    Y+ E+ + +   ++CI C  C   CP  A + 
Sbjct: 52  YHISLGCNHCAQAPCVRNCPTGALYKREDGIVMQDRNKCIGCRYCVWSCPYGAPQY 107


>gi|327400613|ref|YP_004341452.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316121|gb|AEA46737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 572

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ 76
            CP        + L I+ + C  CG C   CPV AI+    P   L  KI++  + +
Sbjct: 239 SCPTGSIERYNDGLKINLESCTGCGFCAAVCPVSAIRNTILPSEVLLEKIDAALSAE 295



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + + C LC    C   CP +      E    L  H   C  C +C   CP +AIK +
Sbjct: 443 IGDTCTLC--RACASFCPANAIVRDIENGRILFTHA-LCFACNLCVGVCPENAIKLE 496


>gi|269102700|ref|ZP_06155397.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162598|gb|EEZ41094.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 552

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 6   TENCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            ++C LC    CV VCP        +    L I  D CI CG+C+  CP + I  +
Sbjct: 417 ADDCTLCMG--CVAVCPTRALHAIGDRPGLLFIEED-CIQCGMCQKACPENVITVE 469



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 17  CVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C++ CP        +  + I+P  C   G C   CP +AI        +
Sbjct: 194 CLDACPAGAISANADQEIEINPYLCQGVGTCATACPTEAITYALPDADD 242



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 17/76 (22%)

Query: 30  ENFLAIHPDECI-------DCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
             +   +PD C         C  C   CP  AI  + +      ++IN           T
Sbjct: 171 PKYFRFNPDLCAHASRGVEGCDRCLDACPAGAISANADQE----IEINPYLCQGVGTCAT 226

Query: 83  KKE------SLPSAAK 92
                    +LP A  
Sbjct: 227 ACPTEAITYALPDADD 242


>gi|255322915|ref|ZP_05364055.1| sulfur reductase FeS subunit [Campylobacter showae RM3277]
 gi|255300027|gb|EET79304.1| sulfur reductase FeS subunit [Campylobacter showae RM3277]
          Length = 189

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +C++C+   CV VCP    ++    +  +    C+ C  C   CP DA
Sbjct: 58  SCVMCEDAPCVTVCPTGASFQTAEGIVLLDHSTCVSCKYCILACPYDA 105


>gi|255102248|ref|ZP_05331225.1| putative nitroreductase [Clostridium difficile QCD-63q42]
          Length = 258

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK---PDTEP 61
          E CI C    C   CPV+          I   +C+ CG C   CP  AI     D  P
Sbjct: 12 ELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPTKAIALTGFDEPP 67



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 7  IEVDKELCIGCGLCKNDCPVNNIIIENKKS 36


>gi|257060127|ref|YP_003138015.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256590293|gb|ACV01180.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 534

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+Y +T++C  C  T C   CP D         +I    C +C G      C  +CP+ +
Sbjct: 1  MSYTITDSCPNC--TSCQIDCPTDAIQLHNGAYSIDEKLCNNCQGYYAEPQCIIQCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PIP 61


>gi|190571400|ref|YP_001975758.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357672|emb|CAQ55116.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 160

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 59  ERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 115



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 59 ERCIACKLCEVICPAQAIVIEAEERED 85



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 100 CIYCGL--CQEACPVDAIVEGPNF 121


>gi|218247058|ref|YP_002372429.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218167536|gb|ACK66273.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 534

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+Y +T++C  C  T C   CP D         +I    C +C G      C  +CP+ +
Sbjct: 1  MSYTITDSCPNC--TSCQIDCPTDAIQLHNGAYSIDEKLCNNCQGYYAEPQCIIQCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PIP 61


>gi|168212266|ref|ZP_02637891.1| nitroreductase family protein [Clostridium perfringens CPE str.
          F4969]
 gi|170716002|gb|EDT28184.1| nitroreductase family protein [Clostridium perfringens CPE str.
          F4969]
          Length = 272

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V T  CI C  T C++ C V      +    I    CI+CG C   CP +A+    
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMVDGKAHIKNKSCIECGHCIAICPKEAVSDSD 57


>gi|195952686|ref|YP_002120976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932298|gb|ACG56998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 223

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C   CP    Y+ E  +  ++ + CI C  C   CP  A  P     ++   
Sbjct: 64  CMQCQNTPCYYACPTGATYKTEEGIVLVNHERCIGCEACVIACPYGARYPYESDDVDECE 123

Query: 68  KINSEYATQ-WPNITT 82
           K+  E A    P+I  
Sbjct: 124 KLYGEEARHTTPHIDK 139


>gi|114569704|ref|YP_756384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Maricaulis maris MCS10]
 gi|114340166|gb|ABI65446.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Maricaulis
           maris MCS10]
          Length = 493

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI CK   CV VCP+         L     ECI C +C   C         P   I  +
Sbjct: 279 DCIDCKQ--CVAVCPMGIDIRDGAQL-----ECIQCALCIDACDDIMAKVDRPTGLITYE 331

Query: 59  TEPGLELWLK 68
           T+  ++ ++ 
Sbjct: 332 TDDNVDRFVA 341


>gi|15803422|ref|NP_289455.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          EDL933]
 gi|15833012|ref|NP_311785.1| oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|217327883|ref|ZP_03443966.1| 4Fe-4S binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794837|ref|YP_003079674.1| putative oxidoreductase [Escherichia coli O157:H7 str. TW14359]
 gi|12517409|gb|AAG58014.1|AE005518_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. EDL933]
 gi|13363230|dbj|BAB37181.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7
          str. Sakai]
 gi|209760648|gb|ACI78636.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760650|gb|ACI78637.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760652|gb|ACI78638.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760654|gb|ACI78639.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209760656|gb|ACI78640.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|217320250|gb|EEC28675.1| 4Fe-4S binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254594237|gb|ACT73598.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli O157:H7 str. TW14359]
 gi|320189228|gb|EFW63887.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. EC1212]
 gi|326339031|gb|EGD62846.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. 1044]
 gi|326343086|gb|EGD66854.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
          str. 1125]
          Length = 131

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 24 CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 78


>gi|121601727|ref|YP_989078.1| NADH dehydrogenase subunit I [Bartonella bacilliformis KC583]
 gi|156632577|sp|A1USX5|NUOI_BARBK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120613904|gb|ABM44505.1| NADH dehydrogenase (quinone), I subunit [Bartonella bacilliformis
           KC583]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPV+AI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAI 118


>gi|113474436|ref|YP_720497.1| 4Fe-4S ferredoxin, iron-sulfur binding [Trichodesmium erythraeum
          IMS101]
 gi|110165484|gb|ABG50024.1| 4Fe-4S ferredoxin, iron-sulfur binding [Trichodesmium erythraeum
          IMS101]
          Length = 75

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPDECIDCGVCEPECPVD 53
          M + +  N I     DC   CPV C + G        ++  +  D CIDCG+C   CPV+
Sbjct: 1  MPHTIVTN-ICEGVADCANACPVACIHSGPGKNNKGTDWYWVDFDSCIDCGICLEVCPVE 59

Query: 54 -AIKPDTEPGLEL 65
           A+  +  P L+ 
Sbjct: 60 KAVLAEERPELQQ 72


>gi|320662092|gb|EFX29493.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 303

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 60  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 116


>gi|303235326|ref|ZP_07321944.1| putative electron transport complex protein RnfC [Finegoldia magna
           BVS033A4]
 gi|302493640|gb|EFL53428.1| putative electron transport complex protein RnfC [Finegoldia magna
           BVS033A4]
          Length = 442

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 21/66 (31%)

Query: 7   ENCILCKHTDCVEVCPV------------DCFYEGENFLAIHPDECIDCGVCEPECP--- 51
           E CI C    CV+VCP+            +  +EG   + ++  +CI+CG C   CP   
Sbjct: 366 EPCIKC--AKCVDVCPIGLLPLFLQLKSLNGDFEGAEKMHLN--DCIECGTCSYICPSNR 421

Query: 52  --VDAI 55
             V+AI
Sbjct: 422 PLVEAI 427


>gi|224368798|ref|YP_002602959.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691514|gb|ACN14797.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 689

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 10  ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           I C     CV+ C       G++ L  + P++C  CG CE  CP   I+
Sbjct: 136 IGCLGLGTCVKACLFGALTMGKDSLPKVDPEKCTGCGACERACPKHIIR 184


>gi|152993080|ref|YP_001358801.1| molybdopterin oxidoreductase, iron sulfur subunit [Sulfurovum sp.
           NBC37-1]
 gi|151424941|dbj|BAF72444.1| molybdopterin oxidoreductase, iron sulfur subunit [Sulfurovum sp.
           NBC37-1]
          Length = 535

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVD 53
           +C  C   +C+  CP + + + +N +  H D  CI C  C   CP +
Sbjct: 95  SCNHCIDPECLRGCPTESYIKLDNGIVWHDDPSCIGCQYCTWNCPYE 141


>gi|154253657|ref|YP_001414481.1| NADH dehydrogenase subunit I [Parvibaculum lavamentivorans DS-1]
 gi|171769682|sp|A7HY41|NUOI_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|154157607|gb|ABS64824.1| NADH-quinone oxidoreductase, chain I [Parvibaculum lavamentivorans
           DS-1]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 19/85 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPALAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDAI 118

Query: 56  ------KPDTEPGLELWLKINSEYA 74
                 +  TE   EL    N   A
Sbjct: 119 VEGPNFEFATETREELMYDKNRLLA 143


>gi|118444096|ref|YP_877287.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi
          NT]
 gi|118134552|gb|ABK61596.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi
          NT]
          Length = 396

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+ CK   C   CP     E EN  AI  D C  CG C   C  +AI+
Sbjct: 9  DKCVGCK--ICANTCPFGAI-EIENKKAIIKDNCTLCGSCINVCKFNAIE 55



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I  D+C+ C +C   CP  AI+ +
Sbjct: 6  ILKDKCVGCKICANTCPFGAIEIE 29


>gi|90425539|ref|YP_533909.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18]
 gi|115502515|sp|Q20Z46|NUOI2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|90107553|gb|ABD89590.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB18]
          Length = 171

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G        I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAVACPVGCIDLSKAVAEDGRWYPEHFRINFARCIFCGYCEEACPTAAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 107 LTPDFELSEW 116


>gi|323189383|gb|EFZ74665.1| iron-sulfur protein [Escherichia coli RN587/1]
          Length = 157

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|301309380|ref|ZP_07215322.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300832469|gb|EFK63097.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 309

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK 
Sbjct: 59  IKNKCIGCG--RCEAICPRGNISIQDHFPVFNRQACVACKACERICPQNAIKF 109


>gi|300716527|ref|YP_003741330.1| Electron transport complex protein [Erwinia billingiae Eb661]
 gi|299062363|emb|CAX59480.1| Electron transport complex protein [Erwinia billingiae Eb661]
          Length = 191

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  ENCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 AWIDEENCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 162



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 23  VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            +   E E  +A I  + CI C  C   CPVDAI
Sbjct: 98  DEAVLEPERKVAWIDEENCIGCTKCIQACPVDAI 131


>gi|298530425|ref|ZP_07017827.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509799|gb|EFI33703.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfonatronospira thiodismutans ASO3-1]
          Length = 99

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
          C+ C    CV+VCP   F  GE    +  P  C++CG C   CP  AIK
Sbjct: 20 CMGCG--SCVQVCPHRVFDVGEQKAVLLDPGGCMECGACALNCPAGAIK 66


>gi|167835950|ref|ZP_02462833.1| ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 170

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|218781191|ref|YP_002432509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762575|gb|ACL05041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 390

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI------KPDT 59
           ++ C+LC    C + CP       ++ + I   +CI CG+C   C   A+      K +T
Sbjct: 298 SDKCVLCG--KCEKRCPTQAIKIKKDAVKIDLGKCIGCGLCAAACKPGALTMAPKTKQET 355

Query: 60  EPGL 63
            P  
Sbjct: 356 PPED 359



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           +  D+C+ CG CE  CP  AIK
Sbjct: 296 LDSDKCVLCGKCEKRCPTQAIK 317


>gi|162605692|ref|XP_001713361.1| RNase L inhibitor [Guillardia theta]
 gi|13794293|gb|AAK39670.1|AF083031_27 RNase L inhibitor [Guillardia theta]
          Length = 598

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C    C + +C + CPV+     C    +  N + IH   CI CG+C  +CP DAIK
Sbjct: 19 DKCNPNKC-NKECKKNCPVEKAGKLCIKIEDSNNIVNIHEINCIGCGICVKKCPYDAIK 76


>gi|330830240|ref|YP_004393192.1| putative NADH:ubiquinone oxidoreductase subunit RnfB [Aeromonas
           veronii B565]
 gi|328805376|gb|AEB50575.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Aeromonas
           veronii B565]
          Length = 192

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        +  +  +EC  C +C   CP D I+
Sbjct: 109 AFIHEDQCIGC--TKCIQACPVDAIVGATKAMHTVIANECTGCDLCVDPCPTDCIE 162


>gi|294053884|ref|YP_003547542.1| DMSO reductase anchor subunit (DmsC) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613217|gb|ADE53372.1| DMSO reductase anchor subunit (DmsC) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 514

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIH-PDECIDCGVCEPECPVDAIKP 57
            VT  C  C    C+  CPV  + + E   +  H  D+CI C  C  +CP D  K 
Sbjct: 95  TVTTACHHCADPGCLNGCPVLAYEKDEETGIVRHLDDQCIGCQYCILKCPYDVPKY 150


>gi|281353400|gb|EFB28984.1| hypothetical protein PANDA_010241 [Ailuropoda melanoleuca]
          Length = 174

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 73  ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 129



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 73 ERCIACKLCEAVCPAQAITIEAEPRAD 99



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 114 CIYCGF--CQEACPVDAIVEGPNF 135


>gi|206890184|ref|YP_002248752.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742122|gb|ACI21179.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 198

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 23/97 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----EGENFLA-----IHPDECIDCGVCEPECPV 52
            +   + CI C    C  VCP  C Y    + EN +      I    CI C  C   CPV
Sbjct: 56  PFTDKDKCIGC--MRCTTVCPSRCIYIKREKTENKMVVTDYIIDASRCIFCAYCVEACPV 113

Query: 53  DAIKPDTEPGLELWLKIN------------SEYATQW 77
            A+    +     + + N             E+A++W
Sbjct: 114 CALVLTEDFEYSSYTRNNLIFNKEQLLKNWDEFASKW 150


>gi|207723881|ref|YP_002254279.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2]
 gi|206589086|emb|CAQ36048.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 62 ERCIACKLCEAVCPALAITIESDQRDD 88


>gi|157364004|ref|YP_001470771.1| glycyl-radical activating family protein [Thermotoga lettingae
          TMO]
 gi|157314608|gb|ABV33707.1| glycyl-radical enzyme activating protein family [Thermotoga
          lettingae TMO]
          Length = 298

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV  C  +     ++ L ++ D C  CG C   CP  A+K
Sbjct: 54 CIHC--QSCVVSCKKEALSFKDDILFLNKDLCSLCGACTEICPTTALK 99


>gi|160881916|ref|YP_001560884.1| Fe-S cluster domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160430582|gb|ABX44145.1| Fe-S cluster domain protein [Clostridium phytofermentans ISDg]
          Length = 427

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C   +C++ CP +          I  + CIDCG C   CP  A
Sbjct: 17 CKGC--INCIKRCPTEAIRVRNQKAVITKEFCIDCGECIRICPHHA 60


>gi|15965027|ref|NP_385380.1| NADH dehydrogenase subunit I [Sinorhizobium meliloti 1021]
 gi|81634769|sp|Q92QP4|NUOI1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|15074206|emb|CAC45853.1| Probable NADH-ubiquinone oxidoreductase chain I [Sinorhizobium
           meliloti 1021]
          Length = 164

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 119



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 43 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 85



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|330829269|ref|YP_004392221.1| anaerobic sulfite reductase subunit C [Aeromonas veronii B565]
 gi|328804405|gb|AEB49604.1| Anaerobic sulfite reductase subunit C [Aeromonas veronii B565]
          Length = 336

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   E CI C    CV+ C    VDC             +CI CG C   CP  A     
Sbjct: 174 HFNAERCIGCG--ACVKACNHHAVDCLAIKHGKAVKEESKCIGCGECVLACPTLA--WQR 229

Query: 60  EPGLELWLKINSEYATQWP 78
           +P     +K+    + + P
Sbjct: 230 DPKQLYMVKLGGRTSKKTP 248



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 8/41 (19%)

Query: 18  VEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPEC 50
           +  CP DC           G   +  + + CI CG C   C
Sbjct: 150 IAGCPNDCAKANMADFGILGIAKIHFNAERCIGCGACVKAC 190


>gi|307109800|gb|EFN58037.1| hypothetical protein CHLNCDRAFT_20716 [Chlorella variabilis]
          Length = 169

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 68  ERCIACKL--CEAICPAQAITIETEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 124



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +TE   +
Sbjct: 68 ERCIACKLCEAICPAQAITIETEERED 94



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 109 CIYCGF--CQEACPVDAIVEGPNFEY 132


>gi|255020680|ref|ZP_05292742.1| 4Fe-4S ferredoxin, iron-sulfur binding [Acidithiobacillus caldus
          ATCC 51756]
 gi|254969916|gb|EET27416.1| 4Fe-4S ferredoxin, iron-sulfur binding [Acidithiobacillus caldus
          ATCC 51756]
          Length = 83

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  + ENCI C    C   CP      G     I PD C +C        C   CPVD 
Sbjct: 1  MSLRIDENCINCDV--CEPECPNGAISMGPTIYVIDPDHCTECVGHYDTPQCREVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D E   
Sbjct: 59 IDLDPEHPE 67


>gi|254506838|ref|ZP_05118977.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus 16]
 gi|219550123|gb|EED27109.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio
           parahaemolyticus 16]
          Length = 230

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQ 145


>gi|212712379|ref|ZP_03320507.1| hypothetical protein PROVALCAL_03467 [Providencia alcalifaciens DSM
           30120]
 gi|212685125|gb|EEB44653.1| hypothetical protein PROVALCAL_03467 [Providencia alcalifaciens DSM
           30120]
          Length = 205

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++ +C  C +  CVE CP    +   E+ L +     C+ C  CE  CP  A + D 
Sbjct: 59  SYYLSISCNHCSNPTCVEGCPTGAMHKRAEDGLVVVDQSICVGCRYCELRCPYGAPQFDE 118

Query: 60  EPGL 63
           +  L
Sbjct: 119 KKKL 122


>gi|212692633|ref|ZP_03300761.1| hypothetical protein BACDOR_02130 [Bacteroides dorei DSM 17855]
 gi|237709058|ref|ZP_04539539.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724459|ref|ZP_04554940.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752581|ref|ZP_06088150.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664918|gb|EEB25490.1| hypothetical protein BACDOR_02130 [Bacteroides dorei DSM 17855]
 gi|229437328|gb|EEO47405.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456754|gb|EEO62475.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235767|gb|EEZ21262.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 259

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C   +C+EVCP        EG+    I   +CI C  C  ECP  A   DT 
Sbjct: 185 VCTEECFACG--ECIEVCPTHAIALSDEGKIETEI--TKCIKCCACVKECPNGARVFDTP 240


>gi|150003844|ref|YP_001298588.1| putative ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254880931|ref|ZP_05253641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319639939|ref|ZP_07994666.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A]
 gi|149932268|gb|ABR38966.1| putative ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254833724|gb|EET14033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317388217|gb|EFV69069.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A]
          Length = 259

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C   +C+EVCP        EG+    I   +CI C  C  ECP  A   DT 
Sbjct: 185 VCTEECFACG--ECIEVCPTHAIALSDEGKIETEI--TKCIKCCACVKECPNGARVFDTP 240


>gi|126465150|ref|YP_001040259.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           marinus F1]
 gi|126013973|gb|ABN69351.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           marinus F1]
          Length = 406

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CI C    C +VC  +        EG+    ++ D C  CG+C   CP  AI  + E  
Sbjct: 350 CIGCGF--CEQVCDYNAVKVVPNEEGKRIAQVNYDLCYGCGLCTSVCPTRAIHFEEELD 406



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
            + P +CI CG CE  C  +A+K       +   ++N + 
Sbjct: 344 VVDPKKCIGCGFCEQVCDYNAVKVVPNEEGKRIAQVNYDL 383


>gi|49474185|ref|YP_032227.1| NADH dehydrogenase subunit I [Bartonella quintana str. Toulouse]
 gi|81696041|sp|Q6FZY3|NUOI_BARQU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49239689|emb|CAF26064.1| NADH dehydrogenase I, I subunit [Bartonella quintana str. Toulouse]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPV+AI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRGNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAI 118


>gi|325283907|ref|YP_004256448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
 gi|324315716|gb|ADY26831.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Deinococcus proteolyticus MRP]
          Length = 335

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 17 CVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C   CP +    G     + I PD C  CG+C   CP  A++ D    L
Sbjct: 36 CARACPHEAVILGPLGASVQIDPDRCTGCGLCVQACPSGALEYDLTGPL 84



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 7/55 (12%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDA 54
           V E C+ C    C  VCP +      +      L +    C  C  C   CP  A
Sbjct: 259 VDEKCMDC--PVCSNVCPTEAITRTHDAAGTLHLTLDLSACTGCMACVDSCPPQA 311


>gi|313157089|gb|EFR56519.1| ferredoxin [Alistipes sp. HGB5]
          Length = 361

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C +VC  D      N   I P +C  C  C  ECP  AI+
Sbjct: 221 CIGCG--KCQKVCAFDAITIANNLAYIDPQKCKLCRKCVNECPTGAIR 266



 Score = 41.7 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 13  KHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
              DCV  C  D            + PD+C  CG C   CP
Sbjct: 144 GFGDCVVSCAFDAIRMNPETGLPEVDPDKCTACGACVKACP 184


>gi|238749713|ref|ZP_04611218.1| Protein nrfC [Yersinia rohdei ATCC 43380]
 gi|238712368|gb|EEQ04581.1| Protein nrfC [Yersinia rohdei ATCC 43380]
          Length = 212

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPV 52
           +C  C    CV+VCP    Y       + ++PD C+ C  C   CP 
Sbjct: 80  SCQHCDRAPCVDVCPTGASYRDKATGIVDVNPDLCVGCQYCIAACPY 126


>gi|298530409|ref|ZP_07017811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509783|gb|EFI33687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 241

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV  CP    ++ E  +  H P++CI C  C   CP   I          W 
Sbjct: 58  CNHCENAPCVRGCPTRALHKVEGGITAHDPNKCIGCRYCLVNCPYGVINYTWNKPHREWE 117

Query: 68  KINS 71
             ++
Sbjct: 118 NDDA 121


>gi|167646403|ref|YP_001684066.1| cytochrome c oxidase accessory protein CcoG [Caulobacter sp. K31]
 gi|167348833|gb|ABZ71568.1| cytochrome c oxidase accessory protein CcoG [Caulobacter sp. K31]
          Length = 501

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 18/65 (27%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +CI C    CV VCP+     +G         ECI+CG+C   C         P   I  
Sbjct: 283 DCIDC--HQCVVVCPMGIDIRDGSQM------ECINCGLCVDACDDILGRLGRPTGLIAY 334

Query: 58  DTEPG 62
           DT+  
Sbjct: 335 DTDAA 339


>gi|158301718|ref|XP_321378.4| AGAP001711-PA [Anopheles gambiae str. PEST]
 gi|157012608|gb|EAA00878.4| AGAP001711-PA [Anopheles gambiae str. PEST]
          Length = 214

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 113 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 169



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 113 ERCIACKLCEAICPAQAITIEAEERAD 139



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 154 CIYCGF--CQEACPVDAIVEGPNF 175


>gi|126640817|ref|YP_001083801.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ATCC 17978]
 gi|213156543|ref|YP_002318204.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AB0057]
 gi|215484512|ref|YP_002326747.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii
           AB307-0294]
 gi|213055703|gb|ACJ40605.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AB0057]
 gi|213988464|gb|ACJ58763.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii
           AB307-0294]
 gi|322506935|gb|ADX02389.1| nuoI [Acinetobacter baumannii 1656-2]
 gi|323516802|gb|ADX91183.1| NADH dehydrogenase subunit I [Acinetobacter baumannii TCDC-AB0715]
          Length = 164

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 42  ERCVACNL--CAVACPVGCISLQKAEKEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 99

Query: 57  PDTEPGLELWL 67
              +  L  ++
Sbjct: 100 LTPDFELGEYV 110


>gi|88601919|ref|YP_502097.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88187381|gb|ABD40378.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 425

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 20/81 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV   +C  C    CVEVCPV+ +                      N +    + CIDCG
Sbjct: 98  YVRAADCTGCGD--CVEVCPVEVYNRFDAGIGVRKAIYKAHPQVVPNVVIRDKEHCIDCG 155

Query: 45  VCEPECPVDAIKPDTEPGLEL 65
           +C   C   A+  D+E   E 
Sbjct: 156 LCYDICGKQAVLRDSEDAEEE 176


>gi|307266841|ref|ZP_07548363.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918129|gb|EFN48381.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 577

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C+ + CP     + +   +I PD+C  C VC   CP DAI
Sbjct: 528 DKCKKCGL--CLRIGCP--AISKKDGIFSIDPDQCTGCTVCMQVCPFDAI 573


>gi|293609051|ref|ZP_06691354.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829624|gb|EFF87986.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 87

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 13/90 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    IHPD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIFMGEVIYEIHPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTKK 84
          I     P     ++   E   ++  +  +K
Sbjct: 59 I-----PKDPQHVETEDELFDKYKKLIAQK 83


>gi|256830313|ref|YP_003159041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfomicrobium baculatum DSM 4028]
 gi|256579489|gb|ACU90625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfomicrobium baculatum DSM 4028]
          Length = 399

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPV 52
          ++ C  C+   C  +CP  C     ++       I  D C+ C +CE  CPV
Sbjct: 9  SDYCTGCE--ACRNICPEQCITMVADYAGFLRPVIDADRCVGCLLCEKSCPV 58


>gi|219842412|gb|ACL37997.1| NADH dehydrogenase [Ochlerotatus taeniorhynchus]
          Length = 216

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 115 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 171



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 115 ERCIACKLCEAICPAQAITIEAEERAD 141



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 156 CIYCGF--CQEACPVDAIVEGPNF 177


>gi|146312467|ref|YP_001177541.1| NADH dehydrogenase subunit I [Enterobacter sp. 638]
 gi|145319343|gb|ABP61490.1| NADH dehydrogenase subunit I [Enterobacter sp. 638]
          Length = 180

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEY 125


>gi|113866398|ref|YP_724887.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525174|emb|CAJ91519.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 86

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +    G     I P++C +C        C+  CPV  
Sbjct: 1  MALMITDDCINCDV--CEPECPNEAISMGPEIYEIDPNKCTECVGHFDEPQCQQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|118475180|ref|YP_891369.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261886061|ref|ZP_06010100.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|156633515|sp|A0RMD6|NUOI_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118414406|gb|ABK82826.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 165

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 9   CILCKHTDCVEVCPVDCFY------EG-----ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C    C   CP +C +      EG      +   I   EC+ CG+C   CP DAI+ 
Sbjct: 78  CVACD--MCATACPANCIFITATEIEGSKEKAPSKFTIDLLECVFCGLCVEACPKDAIRM 135

Query: 58  DT 59
           DT
Sbjct: 136 DT 137


>gi|110801221|ref|YP_695581.1| nitroreductase family protein [Clostridium perfringens ATCC
          13124]
 gi|110675868|gb|ABG84855.1| nitroreductase family protein [Clostridium perfringens ATCC
          13124]
          Length = 272

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+  D++
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAV-SDSD 57

Query: 61 PGLELWLKINSEYATQ 76
            +    + N +    
Sbjct: 58 YDMSKIQEYNKDSFDI 73


>gi|94264660|ref|ZP_01288442.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454891|gb|EAT05135.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 189

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCP        + L  I    CI C  C   CP DA
Sbjct: 68  CQHCQNAPCVKVCPTTASRYTPDGLVAIDYKRCIVCAACILACPYDA 114


>gi|17546773|ref|NP_520175.1| NADH dehydrogenase subunit I [Ralstonia solanacearum GMI1000]
 gi|83746305|ref|ZP_00943358.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551]
 gi|187929285|ref|YP_001899772.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12J]
 gi|207742743|ref|YP_002259135.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609]
 gi|241663476|ref|YP_002981836.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12D]
 gi|309781860|ref|ZP_07676593.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp.
           5_7_47FAA]
 gi|81504319|sp|Q8XXQ9|NUOI_RALSO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|17429073|emb|CAD15761.1| probable nadh dehydrogenaseI(chainI oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|83727055|gb|EAP74180.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551]
 gi|187726175|gb|ACD27340.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12J]
 gi|206594137|emb|CAQ61064.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609]
 gi|240865503|gb|ACS63164.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12D]
 gi|299066341|emb|CBJ37525.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           CMR15]
 gi|308919501|gb|EFP65165.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 163

 Score = 50.9 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 62 ERCIACKLCEAVCPALAITIESDQRDD 88


>gi|325109803|ref|YP_004270871.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324970071|gb|ADY60849.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 558

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           VT  C  C +  C+  CP + + +     +  H  D+C  C  C   CP    K + + G
Sbjct: 117 VTSACHHCVNPACMNACPTNAYEKDPITGIVKHLDDQCFGCQYCTLACPYGVPKYNADKG 176


>gi|307353436|ref|YP_003894487.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanoplanus petrolearius DSM 11571]
 gi|307156669|gb|ADN36049.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanoplanus petrolearius DSM 11571]
          Length = 57

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            V  + C  C+   CV+VCP +     +    +  D C+DC  C  ECP +AI  +
Sbjct: 3  AVVDADKCTGCE--TCVDVCPSEAINMEDGIAVVDADACVDCESCVDECPAEAIHME 57


>gi|256840652|ref|ZP_05546160.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737924|gb|EEU51250.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 301

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++     P  
Sbjct: 23 ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVSHSEFPPE 80

Query: 64 E 64
          +
Sbjct: 81 K 81



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          L I  + CI CG C   CP D I      G 
Sbjct: 18 LNIDQESCIKCGKCVRVCPSD-IFTQERAGE 47


>gi|240102122|ref|YP_002958430.1| formate hydrogenlyase II subunit B (Mhy2B) [Thermococcus
          gammatolerans EJ3]
 gi|239909675|gb|ACS32566.1| formate hydrogenlyase II subunit B (Mhy2B) [Thermococcus
          gammatolerans EJ3]
          Length = 166

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
          NC  C+   CVEVCP +  Y  E+   +  P +CI C +C   CP    + D 
Sbjct: 47 NCRHCEKAPCVEVCPTNALYRDEDGAVLLAPQKCIGCLMCGIVCPFGIPELDV 99


>gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583]
 gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583]
 gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 624

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           YV+  E C  C    C + CPV       +    I+P+ CI C  C   C  DA+  +
Sbjct: 568 YVINPEFCKGCG--KCAKNCPVGAITGVRKEAYHINPNLCIKCDSCRDNCAFDAVYVE 623



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 10/45 (22%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C   +C  +              I+P+ C  CG C   CPV AI
Sbjct: 556 KCAAKNCTAM----------RKYVINPEFCKGCGKCAKNCPVGAI 590


>gi|254455959|ref|ZP_05069388.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082961|gb|EDZ60387.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211]
          Length = 161

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+CE  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIESAAREDGSRKTTRYDIDMMKCIYCGLCEESCPVDAI 116



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          + CI C +CE  CP  AI  ++
Sbjct: 60 ERCIACKLCEAVCPAQAITIES 81


>gi|160879121|ref|YP_001558089.1| nitroreductase [Clostridium phytofermentans ISDg]
 gi|160427787|gb|ABX41350.1| nitroreductase [Clostridium phytofermentans ISDg]
          Length = 273

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V  E CI C    C+  CP  C    +N   +    CI+CG C   CP  A+  + +
Sbjct: 1  MMIVNKEKCIACGL--CINDCPARCITWKDNKAFVVNKICIECGHCIAICPKFAVSTEED 58


>gi|90022045|ref|YP_527872.1| NADH:ubiquinone oxidoreductase subunit RnfB [Saccharophagus
           degradans 2-40]
 gi|89951645|gb|ABD81660.1| electron transport complex, RnfABCDGE type, B subunit
           [Saccharophagus degradans 2-40]
          Length = 206

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 115 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCI 167



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 14/28 (50%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E      I  DECI C  C   CPVDAI
Sbjct: 110 EVPKVAYIREDECIGCTKCIQACPVDAI 137


>gi|70606132|ref|YP_255002.1| ferredoxin-like protein [Sulfolobus acidocaldarius DSM 639]
 gi|68566780|gb|AAY79709.1| ferredoxin-like protein [Sulfolobus acidocaldarius DSM 639]
          Length = 89

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ C+ CK   CV  CP   +   E+   I H + C++CG     CP  AI  +   G
Sbjct: 23 VNTDICLTCKDKPCVASCPAGTYEPSEDGRIIVHYERCLECGGAIVICPFGAITFNFPEG 82


>gi|76666794|emb|CAJ31172.1| Hdr-like menaquinol-oxidizing enzyme, subunit A (HmeA) [uncultured
           sulfate-reducing bacterium]
          Length = 257

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  CV VCP       EG+  + +    CI C  C   CP  +   +        
Sbjct: 118 CNHCDNPPCVRVCPTQATWKREGDGIVMMDWHRCIGCRYCVAACPYGSRSFNWRDPRPHI 177

Query: 67  LKINSEYATQWPNITTKK 84
             I+ +Y T+   +  K 
Sbjct: 178 ADIDDDYPTRNRGVVEKC 195


>gi|45359260|ref|NP_988817.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
 gi|172046136|sp|Q6LWL2|HDRA_METMP RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
 gi|45048135|emb|CAF31253.1| heterodisulfide reductase, subunit A [Methanococcus maripaludis S2]
          Length = 658

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E     G                  I  + CIDCG
Sbjct: 240 YVDEDTCTGCG--ACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C  +A++ D +P  
Sbjct: 298 LCAKVCCAEAVRYDQKPQE 316



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPD--ECIDCGVCEPECPVDA 54
             V  E C  CK   C  +CP +     E +  L    D   C  CG C   CP  A
Sbjct: 577 ATVNEEVCGGCKV--CALMCPYNAITYEEKDGHLVAITDDVACKGCGACAAACPSGA 631


>gi|121603805|ref|YP_981134.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592774|gb|ABM36213.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Polaromonas naphthalenivorans CJ2]
          Length = 89

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +  + G     I P++C +C        C   CPV  
Sbjct: 1  MALLITDDCINCDV--CEPECPNEAIFLGAEIYEIDPNKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPVD 62


>gi|114319976|ref|YP_741659.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|123127335|sp|Q0AAG8|RNFB_ALHEH RecName: Full=Electron transport complex protein rnfB
 gi|114226370|gb|ABI56169.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 186

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP---DTEPGLE 64
           CI C  T C++ CPVD        +  +   EC  CG+C   CPVD I     D +    
Sbjct: 114 CIGC--TRCIQACPVDAILGAAKQMHTVLKGECTGCGLCVDPCPVDCIHMVPVDLDLAEW 171

Query: 65  LW 66
            W
Sbjct: 172 HW 173


>gi|310779383|ref|YP_003967716.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
 gi|309748706|gb|ADO83368.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
          Length = 285

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C LC    C + C  +     ++ + I  + C +CG CE  CP +AI+ +     +++
Sbjct: 64  EKCNLCG--KCGDFCRYNAILPAKDKVLIFKEICHNCGGCEIVCPTNAIQYEKREIGKIY 121


>gi|262383329|ref|ZP_06076465.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294227|gb|EEY82159.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 308

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK 
Sbjct: 58  IKNKCIGCG--RCEAICPRGNISIQDHFPVFNRQACVACKACERICPQNAIKF 108


>gi|206889435|ref|YP_002249380.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206889764|ref|YP_002249430.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206741373|gb|ACI20430.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206741702|gb|ACI20759.1| electron transfer flavoprotein alpha-subunit [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 393

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          E C  C    CV VCP       E+   I  + C  CG C   C   AI    +  +E 
Sbjct: 8  EKCTGC--ATCVNVCPFGAIIIKEDKAFIT-ESCTLCGACVESCSEGAIIDARDKEVEK 63



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I+ ++C  C  C   CP  AI
Sbjct: 5  INIEKCTGCATCVNVCPFGAI 25


>gi|150402634|ref|YP_001329928.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033664|gb|ABR65777.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 252

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C E+CPV      +  + +   +CI CG CE  CPV AI+
Sbjct: 199 DTCINC--MVCSEICPVGAIVYEDGSMKLDDKKCIFCGKCEKNCPVSAIE 246



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          YV T  C+ C+   C EVCPV    E   +N   I P++C+ C +C   CPV AI
Sbjct: 42 YVETNKCVRCEL--CYEVCPVQAITEPSVKNPAEIIPEKCVKCEICAKTCPVGAI 94



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C+ C  T C +VCP               EN ++++ D CI+C VC   CPV AI  +
Sbjct: 162 DLCMGC--TACEKVCPKSSIKVENEMGEIPAENVISLNNDTCINCMVCSEICPVGAIVYE 219

Query: 59  T 59
            
Sbjct: 220 D 220



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E+CI C    C   CP      E  N + I+ D C+ C  CE  CP  +IK + E G 
Sbjct: 132 ESCIKCG--ICERFCPTSAIKVEKRNSIDINLDLCMGCTACEKVCPKSSIKVENEMGE 187



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 28/81 (34%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFL------------------------AIHP 37
           ++ E C+ C+   C + CPV      EG   L                         +  
Sbjct: 74  IIPEKCVKCE--ICAKTCPVGAINVLEGRAELKNDDVIYELKEIDVTHRKIRLKKHELDE 131

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           + CI CG+CE  CP  AIK +
Sbjct: 132 ESCIKCGICERFCPTSAIKVE 152


>gi|147919778|ref|YP_686476.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110621872|emb|CAJ37150.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 276

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++C  C  T+CV VCP       +      I    C  CG CE  C    IK
Sbjct: 200 DDCTRC--TNCVGVCPFKAIRLDDIVEGPVIDERRCKGCGRCEVVCRPGVIK 249



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 38  DECIDCGVCEPECPVDAIKPDT 59
           D+C  C  C   CP  AI+ D 
Sbjct: 200 DDCTRCTNCVGVCPFKAIRLDD 221


>gi|56416854|ref|YP_153928.1| NADH dehydrogenase subunit I [Anaplasma marginale str. St. Maries]
 gi|222475219|ref|YP_002563635.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str.
           Florida]
 gi|81359048|sp|Q5PAK7|NUOI_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56388086|gb|AAV86673.1| NADH dehydrogenase [Anaplasma marginale str. St. Maries]
 gi|222419356|gb|ACM49379.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str.
           Florida]
          Length = 160

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 59  ERCIACKL--CEAICPAQAITIEAAERGDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 115



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 100 CIYCGF--CQEACPVDAIVEGPNFEY 123



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          + CI C +CE  CP  AI  +
Sbjct: 59 ERCIACKLCEAICPAQAITIE 79


>gi|18313282|ref|NP_559949.1| putative ATPase RIL [Pyrobaculum aerophilum str. IM2]
 gi|18160804|gb|AAL64131.1| RNase L inhibitor homolog [Pyrobaculum aerophilum str. IM2]
          Length = 590

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 7  ENCI--LCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          ++C    C H +CV+ CPV+         E      I    CI CG+C  +CP +AI   
Sbjct: 10 DSCQPKKCGH-ECVKYCPVNKSGKVVWIDEQLKKAVISEALCIGCGICVHKCPFEAITIV 68

Query: 59 TEPGL 63
            P  
Sbjct: 69 NLPDE 73


>gi|161830697|ref|YP_001597284.1| NADH dehydrogenase subunit I [Coxiella burnetii RSA 331]
 gi|81722524|sp|Q83BR3|NUOI_COXBU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030927|sp|A9KBL3|NUOI_COXBN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030928|sp|A9N8W4|NUOI_COXBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|161762564|gb|ABX78206.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           331]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        G              I   +CI+CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAI 118



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAVCPACAITIEAGP 84


>gi|45359255|ref|NP_988812.1| polyferredoxin, associated with F420-non-reducing hydrogenase
           [Methanococcus maripaludis S2]
 gi|45048130|emb|CAF31248.1| polyferredoxin, associated with F420-non-reducing hydrogenase
           [Methanococcus maripaludis S2]
          Length = 383

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT++C+ C    CV  CPVD     E+   I  D+CI C VC   CP +AI 
Sbjct: 116 VTKDCVACGV--CVPECPVDAISI-EDIAVIDTDKCIYCTVCSQTCPWNAIF 164



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C+   CVE CP     Y GE      P+ C  CG+C   CPV+ I  + E
Sbjct: 182 VNEEECIGCE--KCVEACPGSMIEYNGEKLGVKLPEACPACGLCVESCPVEVISLEVE 237



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    CVE CPV+               +  L    ++C  CG C  +CP  AIK
Sbjct: 215 EACPACGL--CVESCPVEVISLEVEYASAKPVTDEGLVWSEEKCAYCGPCAIKCPTGAIK 272

Query: 57  PDTEPGLEL 65
                GLEL
Sbjct: 273 VVNPKGLEL 281



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          CI C    C   CP     E +  L  +  +C   G C+  CPV 
Sbjct: 22 CIQC--FSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVG 64


>gi|154244612|ref|YP_001415570.1| formate dehydrogenase, beta subunit [Xanthobacter autotrophicus
           Py2]
 gi|154158697|gb|ABS65913.1| formate dehydrogenase, beta subunit [Xanthobacter autotrophicus
           Py2]
          Length = 323

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +     D+CI CG C   CP +
Sbjct: 110 DGCMHCADPGCLKACPAPGAIVQYSNGIVDFDHDKCIGCGYCVKGCPFN 158


>gi|99081333|ref|YP_613487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99037613|gb|ABF64225.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 247

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 3   YV-VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           YV +T+ C LC+H  CV  CP D  + G+  N L I    C  CG+C   CP
Sbjct: 182 YVSLTDGCTLCQH--CVWSCPTDAMHLGDTGNTLEIRDQACTGCGLCASACP 231


>gi|284042623|ref|YP_003392963.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM
           14684]
 gi|283946844|gb|ADB49588.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM
           14684]
          Length = 177

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E C+ C  + C   CP DC                GE +     I+   CI CG CE  C
Sbjct: 77  EKCVGC--SLCAAACPADCIRVVAAENTPEHRVSAGERYAAVYEINLSRCIFCGYCEVAC 134

Query: 51  PVDAIKPDTEPGLELW 66
           P DAI    +  +  +
Sbjct: 135 PFDAITMGHDYEMSDY 150


>gi|323525306|ref|YP_004227459.1| RnfABCDGE type electron transport complex subunit B [Burkholderia
           sp. CCGE1001]
 gi|323382308|gb|ADX54399.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1001]
          Length = 302

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD----TEPGL 63
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I          G 
Sbjct: 89  CIGC--TLCMQACPVDAIVGAPKHMHTVVAELCTGCDLCVPPCPVDCISMPPVTGEATGW 146

Query: 64  ELWLKINSEYA 74
           + W +  +E A
Sbjct: 147 DAWSEAQAEAA 157



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 83  VIEEQICIGCTLCMQACPVDAI 104


>gi|269958730|ref|YP_003328517.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel]
 gi|269848559|gb|ACZ49203.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel]
          Length = 160

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 59  ERCIACKL--CEAICPAQAITIEAEERDDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 115



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 100 CIYCGF--CQEACPVDAIVEGPNFEY 123



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 59 ERCIACKLCEAICPAQAITIEAEERDD 85


>gi|261403596|ref|YP_003247820.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370589|gb|ACX73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 658

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C  VCP++   E     G                  I  + CI CG
Sbjct: 239 YVDEDICTGCG--ACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAIPLVYTIDMEHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   AI+ D +P  
Sbjct: 297 LCEKACGPGAIRYDQKPEE 315



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECIDCGVCEPECPVDA 54
           V  + C  C    C ++CP +     E +  L   ++   C  CG C   CP  A
Sbjct: 578 VDEDVCGGC--QVCAKMCPYNAITYVEKDGHLIAQVNDVACKGCGACAGACPSGA 630


>gi|261402830|ref|YP_003247054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369823|gb|ACX72572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 654

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           Y+    C  C    C EVCP++   E                    +   I  + CIDCG
Sbjct: 240 YIDETKCTGCGQ--CAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTIDKEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C  +AI  D +P  
Sbjct: 298 LCAKVCGPNAIDYDQKPEF 316



 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIH--PDECIDCGVCEPECPVDAIKP 57
             V  E C  C    CV+ CP       E +  L        C  CG C   CP  A++ 
Sbjct: 577 ATVNKEICGGCGV--CVKQCPYGAPRLIEEDGKLVCDVIAALCKGCGTCVAGCPSGALEQ 634

Query: 58  DTEPGLELWLKI 69
           +    ++L+ +I
Sbjct: 635 NHFKTIQLYKQI 646


>gi|240948591|ref|ZP_04752964.1| electron transport complex protein RnfB [Actinobacillus minor
           NM305]
 gi|240297099|gb|EER47670.1| electron transport complex protein RnfB [Actinobacillus minor
           NM305]
          Length = 203

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        +  +  D C  C +C   CP + I+
Sbjct: 109 AFIHEDMCIGC--TKCIQACPVDAIIGTNKAMHTVIADLCTGCELCIAPCPTNCIE 162



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 22  PVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           P     E        IH D CI C  C   CPVDAI
Sbjct: 96  PTMEGEEAPETKVAFIHEDMCIGCTKCIQACPVDAI 131


>gi|225028913|ref|ZP_03718105.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353]
 gi|224953752|gb|EEG34961.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353]
          Length = 287

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + CI C    CV+ C  +     +  ++I   +C  CG C   CPVDA   D +PG
Sbjct: 161 VEDKCIQCGV--CVKACRNEAITLEDGKISIDTGKCNYCGRCVKSCPVDA--YDAQPG 214


>gi|167718713|ref|ZP_02401949.1| ferredoxin [Burkholderia pseudomallei DM98]
 gi|167814883|ref|ZP_02446563.1| ferredoxin [Burkholderia pseudomallei 91]
          Length = 165

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|161521067|ref|YP_001584494.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189352755|ref|YP_001948382.1| formate-dependent nitrite reductase Fe-S protein [Burkholderia
           multivorans ATCC 17616]
 gi|160345117|gb|ABX18202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189336777|dbj|BAG45846.1| formate-dependent nitrite reductase Fe-S protein [Burkholderia
           multivorans ATCC 17616]
          Length = 247

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|167893415|ref|ZP_02480817.1| ferredoxin [Burkholderia pseudomallei 7894]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|307301099|ref|ZP_07580868.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
 gi|307317833|ref|ZP_07597271.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306896595|gb|EFN27343.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306904054|gb|EFN34640.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|305662719|ref|YP_003859007.1| flavoprotein [Ignisphaera aggregans DSM 17230]
 gi|304377288|gb|ADM27127.1| flavoprotein [Ignisphaera aggregans DSM 17230]
          Length = 245

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T NC  C   D   +CPV+     E F  I   +CI C  C   CP  A+K
Sbjct: 152 TYNCTKCLAKD---ICPVNAITIIEGFPRIDLSKCIGCEKCMYACPFKAVK 199


>gi|300703650|ref|YP_003745252.1| NADH-quinone oxidoreductase subunit i [Ralstonia solanacearum
           CFBP2957]
 gi|299071313|emb|CBJ42631.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           CFBP2957]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 62 ERCIACKLCEAVCPALAITIESDQRDD 88


>gi|221196768|ref|ZP_03569815.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2M]
 gi|221203437|ref|ZP_03576456.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2]
 gi|221177371|gb|EEE09799.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2]
 gi|221183322|gb|EEE15722.1| 4Fe-4S ferredoxin [Burkholderia multivorans CGD2M]
          Length = 247

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y+   +  + +  D+CI C  C   CP  A + D 
Sbjct: 72  SCLHCEDPPCVPVCPTGASYKRKSDGIVLVDYDKCIGCKYCAWACPYGARELDE 125


>gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
 gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
          Length = 298

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 11  LCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C +   CV  CP       +N + I+ D+C+ C  C   CP  A+  +
Sbjct: 54  KCSYCLSCVVTCPNGAITHEDNKIIINEDKCVGCLTCVNSCPNRALSYE 102


>gi|168209486|ref|ZP_02635111.1| nitroreductase family protein [Clostridium perfringens B str.
          ATCC 3626]
 gi|170712325|gb|EDT24507.1| nitroreductase family protein [Clostridium perfringens B str.
          ATCC 3626]
          Length = 272

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+  D++
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAV-SDSD 57

Query: 61 PGLELWLKINSEYATQ 76
            +    + N +    
Sbjct: 58 YDMSKIQEYNKDSFDI 73


>gi|218780444|ref|YP_002431762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761828|gb|ACL04294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 281

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    CV   C ++     +    I+   C  CG C   CP +AI
Sbjct: 199 VNQEECVGCG--TCVSKACILEAISLVDGKAVINQANCRGCGRCAEACPTNAI 249


>gi|113867078|ref|YP_725567.1| NADH dehydrogenase subunit I [Ralstonia eutropha H16]
 gi|194289167|ref|YP_002005074.1| NADH dehydrogenase subunit i [Cupriavidus taiwanensis LMG 19424]
 gi|123033156|sp|Q0KCS2|NUOI_RALEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737389|sp|B3R3X5|NUOI_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|113525854|emb|CAJ92199.1| NADH dehydrogenase chain I [Ralstonia eutropha H16]
 gi|193223002|emb|CAQ69007.1| NADH:ubiquinone oxidoreductase complex I, chain I [Cupriavidus
           taiwanensis LMG 19424]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDARADGTRRTTRYDIDLTKCIFCGFCEEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 62 ERCIACKLCEAVCPALAITIESDARAD 88


>gi|158319108|ref|YP_001511615.1| thiamine pyrophosphate binding domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158139307|gb|ABW17619.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Alkaliphilus oremlandii OhILAs]
          Length = 593

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   CV   CP   F       +I+ ++C+ C VC   CPV AI
Sbjct: 541 EVCIGCK--ACVRTGCPAISFDTEHKKSSINIEQCVGCSVCYQVCPVKAI 588



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 30  ENFLAIHPDECIDCGVCEPE-CPVDAIKPDTEP 61
           ++  +++ + CI C  C    CP  AI  DTE 
Sbjct: 533 QDRYSVNHEVCIGCKACVRTGCP--AISFDTEH 563


>gi|56707710|ref|YP_169606.1| ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89256633|ref|YP_513995.1| ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110670181|ref|YP_666738.1| ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115315052|ref|YP_763775.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118497350|ref|YP_898400.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. novicida U112]
 gi|134302320|ref|YP_001122289.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Francisella tularensis subsp. tularensis WY96-3418]
 gi|156502770|ref|YP_001428835.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167011029|ref|ZP_02275960.1| ferredoxin [Francisella tularensis subsp. holarctica FSC200]
 gi|187931913|ref|YP_001891898.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|195536038|ref|ZP_03079045.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
          novicida FTE]
 gi|224456779|ref|ZP_03665252.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254367947|ref|ZP_04983967.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|254369504|ref|ZP_04985515.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|254370216|ref|ZP_04986222.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|254372715|ref|ZP_04988204.1| hypothetical protein FTCG_00281 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|254374173|ref|ZP_04989655.1| 4Fe-4S ferredoxin [Francisella novicida GA99-3548]
 gi|254874522|ref|ZP_05247232.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|290953549|ref|ZP_06558170.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295313153|ref|ZP_06803835.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. holarctica
          URFT1]
 gi|148685|gb|AAB00856.1| ferredoxin [Francisella tularensis]
 gi|54113949|gb|AAV29608.1| NT02FT0816 [synthetic construct]
 gi|56604202|emb|CAG45215.1| Ferredoxin [Francisella tularensis subsp. tularensis SCHU S4]
 gi|89144464|emb|CAJ79768.1| Ferredoxin [Francisella tularensis subsp. holarctica LVS]
 gi|110320514|emb|CAL08598.1| Ferredoxin [Francisella tularensis subsp. tularensis FSC198]
 gi|115129951|gb|ABI83138.1| ferredoxin [Francisella tularensis subsp. holarctica OSU18]
 gi|118423256|gb|ABK89646.1| 4Fe-4S ferredoxin [Francisella novicida U112]
 gi|134050097|gb|ABO47168.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134253757|gb|EBA52851.1| ferredoxin [Francisella tularensis subsp. holarctica 257]
 gi|151568460|gb|EDN34114.1| ferredoxin [Francisella tularensis subsp. tularensis FSC033]
 gi|151570442|gb|EDN36096.1| hypothetical protein FTCG_00281 [Francisella novicida GA99-3549]
 gi|151571893|gb|EDN37547.1| 4Fe-4S ferredoxin [Francisella novicida GA99-3548]
 gi|156253373|gb|ABU61879.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|157122458|gb|EDO66593.1| ferredoxin [Francisella tularensis subsp. holarctica FSC022]
 gi|187712822|gb|ACD31119.1| 4Fe-4S ferredoxin [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|194372515|gb|EDX27226.1| 4Fe-4S binding domain protein [Francisella tularensis subsp.
          novicida FTE]
 gi|254840521|gb|EET18957.1| ferredoxin [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158877|gb|ADA78268.1| ferredoxin [Francisella tularensis subsp. tularensis NE061598]
 gi|328676838|gb|AEB27708.1| Ferredoxin [Francisella cf. novicida Fx1]
          Length = 81

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP +   +GE +  I P++C +C        C   CP+  
Sbjct: 1  MALLITDECINCD--ICEPECPNEAISQGEEYYEIDPNKCTECVGHFEESQCTKVCPIRC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIID 62



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C +CEPECP +AI    E
Sbjct: 7  DECINCDICEPECPNEAISQGEE 29


>gi|194334196|ref|YP_002016056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Prosthecochloris aestuarii DSM 271]
 gi|194312014|gb|ACF46409.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Prosthecochloris aestuarii DSM 271]
          Length = 62

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +T+ C  C    C   CPV+    G++   I    C DC        C   CPVD 
Sbjct: 1  MAHRITDECTYC--AACEPECPVNAISAGDDTYIIDESVCTDCVGYYEEAACVAVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|329296025|ref|ZP_08253361.1| NADH dehydrogenase subunit I [Plautia stali symbiont]
          Length = 180

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMQDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 116 LTPDFELGEF 125


>gi|320451341|ref|YP_004203437.1| polyferredoxin [Thermus scotoductus SA-01]
 gi|320151510|gb|ADW22888.1| polyferredoxin [Thermus scotoductus SA-01]
          Length = 313

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY---EGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V E C LC    C  VCP +  Y   EGE + L +  + C  CG C   CP   I+ +  
Sbjct: 235 VEEGCTLC--PVCTNVCPTEAVYRVREGEEYVLRLKVEACTGCGACVESCPPQVIRLEEA 292

Query: 61  PGLELWLKINSEYATQWP 78
              EL+ ++  E     P
Sbjct: 293 GKEELFQEL--ELYRGRP 308



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          C +VCP          + +    C  CG+C   CP  A++       E  +
Sbjct: 39 CYQVCPKGAVRLESFRVELDEVLCTGCGLCTGVCPGVALEYPLGGIQEALI 89


>gi|319942594|ref|ZP_08016903.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
 gi|319803890|gb|EFW00812.1| 4Fe-4S ferredoxin [Sutterella wadsworthensis 3_1_45B]
          Length = 193

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           C  C++  C+ VCP            +   P  C+ CG C   CP DA
Sbjct: 67  CQQCENAPCITVCPFGANSHDPETGQVKTDPSRCVGCGYCVTACPYDA 114


>gi|312890388|ref|ZP_07749925.1| NADH dehydrogenase subunit I [Mucilaginibacter paludis DSM 18603]
 gi|311297158|gb|EFQ74290.1| NADH dehydrogenase subunit I [Mucilaginibacter paludis DSM 18603]
          Length = 165

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 19/78 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 72  ERCTACGL--CALSCPAEAITMIAAERQKGEEKLYREEKYAAVYEINMLRCIFCGLCEEA 129

Query: 50  CPVDAIKPDTEPGLELWL 67
           CP +AI  D +     +L
Sbjct: 130 CPKEAIYLDGDIVPSNYL 147


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           Y+V  NC  C  + C++ CP D   ++G+     +  D+C  CG C   C ++A++
Sbjct: 569 YIVEANCNGC--SLCIKECPADAISFQGKKQPVKLDQDKCTKCGACYDICRLNAVE 622



 Score = 33.6 bits (76), Expect = 9.0,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I    C  C +C  ECP DAI
Sbjct: 568 YYIVEANCNGCSLCIKECPADAI 590


>gi|289192883|ref|YP_003458824.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
 gi|288939333|gb|ADC70088.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
          Length = 621

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  E C  C    C EVC V+           + + C+ CG C  ECP DA
Sbjct: 491 VNEEKCNGCG--RCAEVCKVEAIDVRGEISYTNYNVCVGCGKCIKECPNDA 539



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP  C           G  F A++ ++C  CG C   C V+AI
Sbjct: 466 ISGCPNGCVRPQVHDIGIAGVKFPAVNEEKCNGCGRCAEVCKVEAI 511


>gi|261403708|ref|YP_003247932.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius
           M7]
 gi|261370701|gb|ACX73450.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius
           M7]
          Length = 235

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    CVE CP       + F  I   +C+ CG C+  CP  AI    E  + +  K
Sbjct: 150 CNCCL--KCVEACPNGAIIVRKRFPEIVLSKCLGCGRCKRVCPNGAIIEGKEIKMRVR-K 206

Query: 69  INSE 72
           +++E
Sbjct: 207 VDAE 210


>gi|291613546|ref|YP_003523703.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus
           ES-1]
 gi|291583658|gb|ADE11316.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus
           ES-1]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIGCKL--CEAVCPALAIKIEVAEREDGTRRTTRYDIDLVKCIFCGFCEESCPVDAI 117



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          + CI C +CE  CP  AIK + 
Sbjct: 61 ERCIGCKLCEAVCPALAIKIEV 82


>gi|227883743|ref|ZP_04001548.1| electron transport protein ysaA [Escherichia coli 83972]
 gi|300920461|ref|ZP_07136893.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300971467|ref|ZP_07171470.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301047069|ref|ZP_07194171.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|331659889|ref|ZP_08360827.1| putative electron transport protein YsaA [Escherichia coli TA206]
 gi|227839323|gb|EEJ49789.1| electron transport protein ysaA [Escherichia coli 83972]
 gi|281180618|dbj|BAI56948.1| putative electron transport protein [Escherichia coli SE15]
 gi|284923605|emb|CBG36702.1| putative electron-transport protein [Escherichia coli 042]
 gi|300301017|gb|EFJ57402.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300411238|gb|EFJ94776.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|300412526|gb|EFJ95836.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|307555678|gb|ADN48453.1| putative electron transport protein YsaA [Escherichia coli ABU
           83972]
 gi|315294101|gb|EFU53453.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|315300154|gb|EFU59392.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|320193914|gb|EFW68547.1| Electron transport protein HydN [Escherichia coli WV_060327]
 gi|330909637|gb|EGH38151.1| electron transport protein HydN [Escherichia coli AA86]
 gi|331053104|gb|EGI25137.1| putative electron transport protein YsaA [Escherichia coli TA206]
          Length = 157

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|218130737|ref|ZP_03459541.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM
          20697]
 gi|217987081|gb|EEC53412.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM
          20697]
          Length = 427

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPV 52
          C  C    C ++C  D     E     F+ I  D+CI+CG+C+  CP+
Sbjct: 14 CTGC--MACSDICRHDAIKIVERNCLPFVQIDADKCINCGLCQKACPI 59


>gi|197283980|ref|YP_002149852.1| oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
 gi|194681467|emb|CAR40306.1| putative oxidoreductase, Fe-S subunit [Proteus mirabilis HI4320]
          Length = 223

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+   C+ VCP       E    + ++ ++CI C  C   CP  
Sbjct: 91  SCQQCEDAPCISVCPTGASWRDESNGIVRVNKEKCIGCSYCISACPYQ 138


>gi|320156811|ref|YP_004189190.1| NrfC protein [Vibrio vulnificus MO6-24/O]
 gi|319932123|gb|ADV86987.1| NrfC protein [Vibrio vulnificus MO6-24/O]
          Length = 228

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQ 145


>gi|20808295|ref|NP_623466.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|20516898|gb|AAM25070.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
          Length = 156

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E CI C   +C+  CP       +    I P++C DCG C   CPV AI
Sbjct: 106 VDEEKCIGCG--ECLRFCPFKAIELKDGVAHIDPNKCRDCGRCIDVCPVGAI 155


>gi|320353466|ref|YP_004194805.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
 gi|320121968|gb|ADW17514.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
          Length = 807

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ E C  C    C EVCP        + +    ++   C  CG C  EC  DAI
Sbjct: 593 IIAEKCKACG--KCAEVCPYGAITVDVKNKKPAVVNSAACAGCGTCSAECRFDAI 645



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I  ++C  CG C   CP  AI  D +
Sbjct: 593 IIAEKCKACGKCAEVCPYGAITVDVK 618


>gi|294340543|emb|CAZ88928.1| Putative Electron transport complex, RnfABCDGE type, B subunit
           (RnfB) [Thiomonas sp. 3As]
          Length = 210

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPGLEL 65
           CI C  T C++ CPVD      +    +  D C  C +C P CPVD I+ +  T+P L  
Sbjct: 88  CIGC--TLCIQACPVDAIAGVSKRMHTVIEDWCTGCALCLPPCPVDCIRMEALTDPALAT 145

Query: 66  WLKINS 71
               N+
Sbjct: 146 RSGWNA 151



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 25  CFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C  EG      I P  CI C +C   CPVDAI
Sbjct: 72  CGTEGPRERAVIDPALCIGCTLCIQACPVDAI 103


>gi|302501279|ref|XP_003012632.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371]
 gi|302665888|ref|XP_003024550.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517]
 gi|291176191|gb|EFE31992.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371]
 gi|291188609|gb|EFE43939.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517]
 gi|326473101|gb|EGD97110.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326477944|gb|EGE01954.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 216

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 115 ERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 172

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 173 ESP----------NAEYATETREELLYNKEKLLANGDKWE 202


>gi|256810207|ref|YP_003127576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793407|gb|ACV24076.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 657

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C  VCP++   E     G                  I  + CI CG
Sbjct: 239 YVDEDVCTGCG--ACAAVCPIEVPNEFDLGLGTRKAIYVPFPQAVPLIYTIDMEHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   AI+ D +P  
Sbjct: 297 LCEKACGPGAIRYDQKPEE 315



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECIDCGVCEPECPVDA 54
             V  + C  C    C ++CP +     E +  L   ++   C  CG C   CP  A
Sbjct: 576 AVVDEDVCGGC--QVCAKMCPYNAISYVEKDGHLVAQVNDVACKGCGACAGACPSGA 630



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            +  D C  C VC   CP +AI    + G 
Sbjct: 577 VVDEDVCGGCQVCAKMCPYNAISYVEKDGH 606


>gi|253997321|ref|YP_003049385.1| RnfABCDGE type electron transport complex subunit B [Methylotenera
           mobilis JLW8]
 gi|253984000|gb|ACT48858.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylotenera mobilis JLW8]
          Length = 200

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK---- 56
            ++    CI C  T C++ CPVD        +  I   EC  C +C   CPVD I     
Sbjct: 107 AFIDEATCIGC--TLCIQACPVDAILGAAKHMHTIIASECTGCELCLAPCPVDCISMQPL 164

Query: 57  PDTEPGLEL 65
            +T    + 
Sbjct: 165 AETPDNWKW 173


>gi|215488858|ref|YP_002331289.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312968084|ref|ZP_07782295.1| iron-sulfur protein [Escherichia coli 2362-75]
 gi|215266930|emb|CAS11373.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312287343|gb|EFR15252.1| iron-sulfur protein [Escherichia coli 2362-75]
          Length = 157

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|168216021|ref|ZP_02641646.1| nitroreductase family protein [Clostridium perfringens NCTC 8239]
 gi|182381714|gb|EDT79193.1| nitroreductase family protein [Clostridium perfringens NCTC 8239]
          Length = 272

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+  D++
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAV-SDSD 57

Query: 61 PGLELWLKINSEYATQ 76
            +    + N +    
Sbjct: 58 YDMSKIQEYNKDSFDI 73


>gi|104779570|ref|YP_606068.1| ferredoxin 4Fe-4S [Pseudomonas entomophila L48]
 gi|95108557|emb|CAK13251.1| Ferredoxin 4Fe-4S [Pseudomonas entomophila L48]
          Length = 83

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNAAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTK 83
          I     P  E   +   E   ++  IT K
Sbjct: 59 I-----PLDEAHPETEDELMAKYRRITGK 82


>gi|78224540|ref|YP_386287.1| NADH dehydrogenase I subunit F [Geobacter metallireducens GS-15]
 gi|78195795|gb|ABB33562.1| NADH dehydrogenase I, F subunit [Geobacter metallireducens GS-15]
          Length = 591

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ E C+ C    C + CPVD    E      +  ++C  C  C   C   AI+
Sbjct: 540 VIEEKCVKCG--ACFKACPVDAIVWEKGQVAYLDKEKCTKCKSCYDACRFMAIE 591



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP +C  E   +  I  ++C+ CG C   CPVDAI  +
Sbjct: 527 CPSNCCKELLLWQVI-EEKCVKCGACFKACPVDAIVWE 563


>gi|57239100|ref|YP_180236.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579047|ref|YP_197259.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617106|ref|YP_196305.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str. Gardel]
 gi|75507519|sp|Q5FHN1|NUOI_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81672815|sp|Q5HBF8|NUOI_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|57161179|emb|CAH58093.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416718|emb|CAI27831.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Gardel]
 gi|58417673|emb|CAI26877.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 168

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENF-----LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP           + +N        I   +CI CG C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAICPAQAITIEAQERDTDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 123



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 108 CIYCGF--CQEACPVDAIVEGPNFEY 131



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + + 
Sbjct: 66 ERCIACKLCEAICPAQAITIEAQE 89


>gi|288942581|ref|YP_003444821.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Allochromatium vinosum DSM 180]
 gi|2811081|sp|P00208|FER_ALLVD RecName: Full=Ferredoxin
 gi|1518927|gb|AAC44333.1| ferredoxin [Allochromatium vinosum DSM 180]
 gi|288897953|gb|ADC63789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Allochromatium vinosum DSM 180]
          Length = 83

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP     +G+    I P  C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D     
Sbjct: 59 IIKDPSHEE 67


>gi|310780235|ref|YP_003968567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309749558|gb|ADO84219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 59

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y + +  CI C    C  VCPV C  E  +    I    CIDCG C   CPV+ I P
Sbjct: 1  MAYRINQSECIACG--ACEPVCPVSCISEVVDGKREIDESACIDCGACAGVCPVECIAP 57


>gi|298481236|ref|ZP_06999430.1| ferredoxin-type protein [Bacteroides sp. D22]
 gi|298272810|gb|EFI14377.1| ferredoxin-type protein [Bacteroides sp. D22]
          Length = 515

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 418 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 477

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 478 CPARPFRAIYIEGNPVQKE 496



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 392 DCTVCGD-----VCPNGAILPISVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 446

Query: 53  DAI 55
            A+
Sbjct: 447 QAV 449


>gi|322418616|ref|YP_004197839.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125003|gb|ADW12563.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 428

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VT+   C  C    C  +CPV           +   +  + C+ CGVC   CP  A++ +
Sbjct: 286 VTDPARCTGCG--RCTTICPVHAIAMVPQAAGSKAQLTSELCLGCGVCARNCPAGAVRLE 343


>gi|227358151|ref|ZP_03842492.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
 gi|227161487|gb|EEI46524.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
          Length = 223

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+   C+ VCP       E    + ++ ++CI C  C   CP  
Sbjct: 91  SCQQCEDAPCISVCPTGASWRDESNGIVRVNKEKCIGCSYCISACPYQ 138


>gi|255658485|ref|ZP_05403894.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Mitsuokella multacida DSM 20544]
 gi|260849283|gb|EEX69290.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Mitsuokella multacida DSM 20544]
          Length = 614

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ + C  CK   C+    CP     +G   + I   +C  CG+C   CP DAI+
Sbjct: 552 VLQDACRKCK--KCIREIGCPGIVVEDGN--IKIDASQCTGCGICADICPFDAIE 602


>gi|117617460|ref|YP_857144.1| electron transport complex protein RnfB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166225078|sp|A0KLJ3|RNFB_AERHH RecName: Full=Electron transport complex protein rnfB
 gi|117558867|gb|ABK35815.1| electron transport complex, RnfABCDGE type, B subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 187

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CP D I+
Sbjct: 108 AFIHEDQCIGC--TKCIQACPVDAIVGATKAMHTVIADECTGCDLCVDPCPTDCIE 161


>gi|91775203|ref|YP_544959.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
 gi|91775347|ref|YP_545103.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
 gi|91709190|gb|ABE49118.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
 gi|91709334|gb|ABE49262.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacillus flagellatus KT]
          Length = 216

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ E  CI C  T C++ CPVD        +  +  DEC  C +C   CP++ I   
Sbjct: 75  MRAVIDEARCIGC--TLCIKACPVDAILGAHKQMHTVIADECTGCELCLVPCPMECIDMV 132

Query: 57  PDTEPGLE 64
           P  E   +
Sbjct: 133 PLIEQDWD 140



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 22 PVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAI 55
          P++ F+          I    CI C +C   CPVDAI
Sbjct: 63 PLNPFHGATRPKMRAVIDEARCIGCTLCIKACPVDAI 99


>gi|11095245|gb|AAG29808.1|AF249899_1 carbon monoxide dehydrogenase subunit CooF [Carboxydothermus
           hydrogenoformans]
          Length = 183

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+
Sbjct: 98  EQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIR 148


>gi|45357879|ref|NP_987436.1| indolepyruvate oxidoreductase subunit alpha 1 [Methanococcus
           maripaludis S2]
 gi|45047439|emb|CAF29872.1| indolepyruvate oxidoreductase subunit alpha 1 [Methanococcus
           maripaludis S2]
          Length = 612

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 3   YVVTEN-CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           YV+ +N CI CK   CVE   CP       +    I  D C  CG+C+  CP +A+
Sbjct: 556 YVIDKNKCINCK--ICVERLGCP--AITMNDEIPEIM-DNCTGCGLCKAVCPANAV 606


>gi|332184173|gb|AEE26427.1| Ferredoxin [Francisella cf. novicida 3523]
          Length = 81

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP +   +GE +  I P++C +C        C   CP+  
Sbjct: 1  MALLITDECINCD--ICEPECPNEAISQGEEYYEIDPNKCTECVGHFDESQCTKVCPIRC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIID 62



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C +CEPECP +AI    E
Sbjct: 7  DECINCDICEPECPNEAISQGEE 29


>gi|331670408|ref|ZP_08371247.1| putative electron transport protein YsaA [Escherichia coli TA271]
 gi|323934872|gb|EGB31254.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|331062470|gb|EGI34390.1| putative electron transport protein YsaA [Escherichia coli TA271]
          Length = 157

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|307729066|ref|YP_003906290.1| electron transport complex, RnfABCDGE type subunit B [Burkholderia
           sp. CCGE1003]
 gi|307583601|gb|ADN56999.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1003]
          Length = 321

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD----TEPGL 63
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I          G 
Sbjct: 89  CIGC--TLCMQACPVDAIVGAPKHMHTVVAELCTGCDLCVPPCPVDCISMLPVTGEATGW 146

Query: 64  ELWLKINSEYATQ 76
           + W +  ++ A +
Sbjct: 147 DAWSQPQADAARE 159



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 83  VIDEQICIGCTLCMQACPVDAI 104


>gi|237859143|gb|ACR23747.1| RnfB [Acetobacterium woodii DSM 1030]
          Length = 333

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
            Y++ ENCI C    C + CPV+            I  D CI CG+C  +C   AI+
Sbjct: 272 AYIIEENCIACGL--CAKNCPVNAITGEIKKPPYVIDHDMCIGCGICFDKCRKSAIE 326



 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C  C   +CV+ CP++C       G++   I  + CI CG+C   CPV+AI  + +  
Sbjct: 244 DKCRQC--YECVDKCPMNCISGDVEYGKSTAYIIEENCIACGLCAKNCPVNAITGEIKKP 301



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            +  C  VCP D    GE+ L  + P++C  CG C   CP  +I        E
Sbjct: 144 GYGTCKAVCPFDAIVIGEDGLPKVDPEKCTSCGKCVEACP-KSIMTLVPEAQE 195



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T  CI C    CV+ C  D      N   I  D+C  C  C  +CP++ I  D E
Sbjct: 214 TTACIACG--ACVKACRFDAITVENNCAKIDYDKCRQCYECVDKCPMNCISGDVE 266


>gi|237735382|ref|ZP_04565863.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|229381127|gb|EEO31218.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 257

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C++VCP++     E  + I  D C+ C  C   CP  AI    E  +E
Sbjct: 178 EKCIGC--QTCIKVCPMNNIELIEGKIKI-KDNCMTCLACFHWCPTAAIYMSKEKEIE 232


>gi|269861875|ref|XP_002650615.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220065879|gb|EED43441.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 379

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 4  VVTENCI--LCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C    C   +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 7  VNEELCKPDKC-AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 63


>gi|208779139|ref|ZP_03246485.1| 4Fe-4S binding domain protein [Francisella novicida FTG]
 gi|208744939|gb|EDZ91237.1| 4Fe-4S binding domain protein [Francisella novicida FTG]
          Length = 81

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++T+ CI C    C   CP +   +GE +  I P++C +C        C   CP+  
Sbjct: 1  MALLITDECINCD--ICEPECPNEAISQGEEYYEIDPNKCTECVGHFEESQCTKVCPIRC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIID 62



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C +CEPECP +AI    E
Sbjct: 7  DECINCDICEPECPNEAISQGEE 29


>gi|134046385|ref|YP_001097870.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664010|gb|ABO35656.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Methanococcus maripaludis C5]
          Length = 612

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 3   YVVTEN-CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+ +N C  CK   CVE   CP       E    I  + C  CG+C+  CP DAI    
Sbjct: 556 YVIDKNKCTSCK--ICVERLGCP--AITLSEKIPEIM-ETCTGCGLCKAVCPADAINEVD 610

Query: 60  E 60
           E
Sbjct: 611 E 611


>gi|83589957|ref|YP_429966.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572871|gb|ABC19423.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 365

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C   CP       E    I+ + CI CG C   CP  AIK
Sbjct: 193 EECIGCG--KCRRWCPAGAITVTE-KATINGELCIGCGECTVTCPRRAIK 239


>gi|20094675|ref|NP_614522.1| MinD family protein [Methanopyrus kandleri AV19]
 gi|19887839|gb|AAM02452.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Methanopyrus kandleri AV19]
          Length = 259

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T++C+ C    C EVCP D            P  C  CG+C   CP DAI+ + E
Sbjct: 64  VKTDDCVECG--RCSEVCPWDAVE--------DPTACDGCGICAIACPEDAIEFEPE 110


>gi|15643163|ref|NP_228207.1| glutamate synthase, alpha subunit [Thermotoga maritima MSB8]
 gi|148269661|ref|YP_001244121.1| glutamate synthase (NADPH) [Thermotoga petrophila RKU-1]
 gi|170288336|ref|YP_001738574.1| glutamate synthase (NADPH) [Thermotoga sp. RQ2]
 gi|281411629|ref|YP_003345708.1| glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10]
 gi|4980901|gb|AAD35482.1|AE001719_8 glutamate synthase, alpha subunit [Thermotoga maritima MSB8]
 gi|147735205|gb|ABQ46545.1| glutamate synthase (NADPH) GltB2 subunit [Thermotoga petrophila
          RKU-1]
 gi|170175839|gb|ACB08891.1| Glutamate synthase (NADPH) [Thermotoga sp. RQ2]
 gi|281372732|gb|ADA66294.1| Glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10]
          Length = 507

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 3  YVVTEN---CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +VV  +   CI C    CV VC      + E  N +     +C+ C  CE  CP +AI
Sbjct: 10 FVVERDDYKCIRCL--ACVRVCSYGANFYDENANRVYTENTKCVGCHFCEAICPTEAI 65


>gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
 gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
          Length = 597

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           +TY +  E C  C    C   CP +C    +N    I  + CI CG C   C   A+
Sbjct: 540 LTYSIDAEKCKKCGL--CARNCPANCISGNKNTPYVIDGERCIRCGSCMDSCKFGAV 594


>gi|148259363|ref|YP_001233490.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidiphilium cryptum JF-5]
 gi|146401044|gb|ABQ29571.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidiphilium
           cryptum JF-5]
          Length = 180

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +E C  C +  CV+ CP     ++ G N + +    C  C  C   CP D
Sbjct: 55  SERCNHCSNATCVDACPTGASQYWNGSNIVVVDATRCTGCKACIAACPYD 104


>gi|85717021|ref|ZP_01047983.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A]
 gi|85696145|gb|EAQ34041.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|332297422|ref|YP_004439344.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
 gi|332180525|gb|AEE16213.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
          Length = 463

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C  T CV  CP +          I  + CIDCG C   CP  A
Sbjct: 18 CKGC--TICVTGCPAEAIRVRNGKAVIMEERCIDCGECIRHCPNKA 61


>gi|310778774|ref|YP_003967107.1| nitroreductase [Ilyobacter polytropus DSM 2926]
 gi|309748097|gb|ADO82759.1| nitroreductase [Ilyobacter polytropus DSM 2926]
          Length = 273

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI C    CV+ C P D     +    I+   C  CG C   CP DA+  D 
Sbjct: 1  MMIVNEEKCIGCGL--CVKDCFPKD-IELIDKKAKINNVTCFKCGHCIAVCPTDAVTTD- 56

Query: 60 EPGLELWLKINSEYATQWPN 79
          E  +   ++ + E     PN
Sbjct: 57 EFDMSEVIEYDKEKFQVDPN 76


>gi|297539545|ref|YP_003675314.1| RnfABCDGE type electron transport complex subunit B [Methylotenera
           sp. 301]
 gi|297258892|gb|ADI30737.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylotenera sp. 301]
          Length = 190

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  I   EC  C +C   CPVD I
Sbjct: 106 AFIDEATCIGC--TLCIQACPVDAILGAAKHMHTIISSECTGCELCLAPCPVDCI 158


>gi|59712159|ref|YP_204935.1| formate-dependent nitrite reductase, 4Fe4S subunit [Vibrio fischeri
           ES114]
 gi|59480260|gb|AAW86047.1| formate-dependent nitrite reductase, 4Fe4S subunit [Vibrio fischeri
           ES114]
          Length = 228

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCENAPCVMVCPTGAAYKDETTGIVDVHNEKCVGCGYCLAACPYQ 145


>gi|310827928|ref|YP_003960285.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612]
 gi|308739662|gb|ADO37322.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612]
          Length = 275

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + C  CK   C EVCP+       + + I+   CI CG C  +CPV A   D 
Sbjct: 203 DTCTDCKL--CSEVCPMGSIS--HDDVQIYTGICIKCGACIKKCPVHARYYDD 251


>gi|297526779|ref|YP_003668803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Staphylothermus hellenicus DSM 12710]
 gi|297255695|gb|ADI31904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Staphylothermus hellenicus DSM 12710]
          Length = 161

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 17 CVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          C  +CP +     +  +   I+PD+CI CGVC P+CP  AI 
Sbjct: 45 CANICPFNAIEMEKIYDLPRINPDKCIGCGVCVPQCPGLAIF 86


>gi|268592682|ref|ZP_06126903.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
 gi|291311822|gb|EFE52275.1| dimethylsulfoxide reductase, chain B [Providencia rettgeri DSM
           1131]
          Length = 180

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  C    CV  CP    +  E +  + +  D+C+ C  C   CP +A + D
Sbjct: 58  ACNHCDDPQCVSHCPTTAMHKREEDGVVLVDHDKCVGCRYCTWACPYEAPQFD 110


>gi|218782860|ref|YP_002434178.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764244|gb|ACL06710.1| Indolepyruvate ferredoxin oxidoreductase, alpha/beta subunit
           [Desulfatibacillum alkenivorans AK-01]
          Length = 617

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 11  LCKHTD-CVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            CK    CV+   CP    Y   N +AI+ ++CI C VC   CP  AI P
Sbjct: 567 KCKDHRLCVDALGCP--AMYVENNKVAINAEQCIGCAVCAQVCPEHAIVP 614


>gi|169343842|ref|ZP_02864839.1| nitroreductase family protein [Clostridium perfringens C str.
          JGS1495]
 gi|169297962|gb|EDS80053.1| nitroreductase family protein [Clostridium perfringens C str.
          JGS1495]
          Length = 272

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V T  CI C  T C++ C V      +    I  + CI+CG C   CP +A+    
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEIVDGKAHIKNESCIECGHCIAICPKEAVSDSD 57


>gi|171185947|ref|YP_001794866.1| putative ATPase RIL [Thermoproteus neutrophilus V24Sta]
 gi|170935159|gb|ACB40420.1| ABC transporter related [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 7  ENCI--LCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C   +CV+ CPV+         E      I    CI CG+C  +CP  AI
Sbjct: 10 DACQPKKCG-QECVKYCPVNRSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFQAI 65


>gi|153806402|ref|ZP_01959070.1| hypothetical protein BACCAC_00665 [Bacteroides caccae ATCC 43185]
 gi|149131079|gb|EDM22285.1| hypothetical protein BACCAC_00665 [Bacteroides caccae ATCC 43185]
          Length = 501

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 404 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 463

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 464 CPARPFRAIYIEGNPVQKE 482



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 378 DCTVCGD-----VCPNGAILPISVKQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 432

Query: 53  DAI 55
            A+
Sbjct: 433 QAV 435


>gi|29345451|ref|NP_808954.1| F420H2:quinone oxidoreductase [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|298481942|ref|ZP_07000131.1| F420H2:quinone oxidoreductase [Bacteroides sp. D22]
 gi|29337343|gb|AAO75148.1| F420H2:quinone oxidoreductase [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|298271806|gb|EFI13378.1| F420H2:quinone oxidoreductase [Bacteroides sp. D22]
          Length = 400

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 9  CILCKHTDCVEVCPVDCF---YEGENFLA--IHPDECIDCGVCEPECP--VDA 54
          C  C+   CV  CP+ C     + E F+   +    CIDCG CE  CP  V+A
Sbjct: 10 CCGCE--ACVSSCPLQCIELVKDKEGFMYPQVDTARCIDCGKCEKACPELVEA 60


>gi|116750393|ref|YP_847080.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116750435|ref|YP_847122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116699457|gb|ABK18645.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116699499|gb|ABK18687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1006

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 9    CILCKHTDCVEVCPVDC--FYEGEN---FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    CV +CP     F E         I+P  C  CG+C   C   AI+       
Sbjct: 940  CSGCGV--CVNICPFSAPRFMESGRDAGKAEINPALCKGCGLCAASCRSGAIRLKGFDDA 997

Query: 64   ELWLKI 69
            +++  I
Sbjct: 998  QIFAMI 1003



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           ++  E C  C    C +VCP     E                        I    C+ CG
Sbjct: 106 FIDLERCTACGQ--CRQVCPASAINEFNQGIDRREATFMRYPQAIPRGYGIDRASCLGCG 163

Query: 45  VCEPECPVDAIKPDTEP 61
           +CE  C   A++ D +P
Sbjct: 164 LCEKVCLAQAVRYDDQP 180



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +P+ C  CGVC   CP  A +           +IN
Sbjct: 936 NPNVCSGCGVCVNICPFSAPRFMESGRDAGKAEIN 970


>gi|325279072|ref|YP_004251614.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324310881|gb|ADY31434.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            V E C  C    C+ +CPV      E  +      CI C  C  +CP +A   +T    
Sbjct: 188 TVAELCTQCGF--CIGICPVQAIRL-EEEIVSDAGRCIKCCACVKQCPNEARLFETPYTD 244

Query: 64  ELW 66
            L+
Sbjct: 245 LLF 247


>gi|302336532|ref|YP_003801739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
 gi|301320372|gb|ADK68859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
          Length = 302

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +V  + C+ C    C  VC +D     +N  ++   ECI CG C   CPV AI+ D 
Sbjct: 234 HVDADKCVKCG--KCARVCKMDVDI-TKNSSSL---ECIRCGECAKACPVKAIEVDL 284



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 17  CVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVD 53
           C  +CP+  FY   N        +  D+C+ CG C   C +D
Sbjct: 212 CKWICPLGAFYSLFNKVSLLQYHVDADKCVKCGKCARVCKMD 253


>gi|300856106|ref|YP_003781090.1| nitroreductase family protein fused to ferredoxin
          domain-containing protein [Clostridium ljungdahlii DSM
          13528]
 gi|300436221|gb|ADK15988.1| nitroreductase family protein fused to ferredoxin domain protein
          [Clostridium ljungdahlii DSM 13528]
          Length = 272

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  V +E CI C    CV+ C        +    I+   CI CG C   CP  A+  D E
Sbjct: 1  MMNVNSEKCIGCGQ--CVKDCFARDIEIIDGKAKINNITCIKCGHCIAVCPKSAVSTD-E 57

Query: 61 PGLELWLKINSE 72
            +E   + N E
Sbjct: 58 YNMEDIKEYNKE 69


>gi|296113921|ref|YP_003627859.1| 4Fe-4S ferredoxin [Moraxella catarrhalis RH4]
 gi|295921615|gb|ADG61966.1| 4Fe-4S ferredoxin [Moraxella catarrhalis RH4]
 gi|326559362|gb|EGE09789.1| 4Fe-4S ferredoxin [Moraxella catarrhalis 7169]
 gi|326562486|gb|EGE12804.1| 4Fe-4S ferredoxin [Moraxella catarrhalis 46P47B1]
 gi|326564262|gb|EGE14492.1| 4Fe-4S ferredoxin [Moraxella catarrhalis 103P14B1]
 gi|326567195|gb|EGE17315.1| 4Fe-4S ferredoxin [Moraxella catarrhalis 12P80B1]
 gi|326568298|gb|EGE18380.1| 4Fe-4S ferredoxin [Moraxella catarrhalis BC8]
 gi|326569999|gb|EGE20046.1| 4Fe-4S ferredoxin [Moraxella catarrhalis BC1]
 gi|326570080|gb|EGE20126.1| 4Fe-4S ferredoxin [Moraxella catarrhalis BC7]
 gi|326572935|gb|EGE22920.1| 4Fe-4S ferredoxin [Moraxella catarrhalis CO72]
 gi|326573819|gb|EGE23772.1| 4Fe-4S ferredoxin [Moraxella catarrhalis O35E]
 gi|326574761|gb|EGE24697.1| 4Fe-4S ferredoxin [Moraxella catarrhalis 101P30B1]
          Length = 83

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE CI C    C  VCP +    G++   I+P  C +C        C   CPVD 
Sbjct: 1  MALKITEECINCDV--CEPVCPNEAISAGDDIYVINPALCTECVGHYDTPQCVDICPVDC 58

Query: 55 I-----KPDTEPGL 63
          I      P+TE  L
Sbjct: 59 IPKDPKFPETEDEL 72


>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus torques L2-14]
          Length = 622

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C  + C + CPV+      ++   I   +CI CG C   CP  A+  +
Sbjct: 572 EKCKGC--SKCAKNCPVNAITGKIKSPFTIDNSKCIKCGSCIDNCPFGAVYTE 622



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I P++C  C  C   CPV+AI
Sbjct: 569 IDPEKCKGCSKCAKNCPVNAI 589


>gi|300023445|ref|YP_003756056.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525266|gb|ADJ23735.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDAI 117



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 60 ERCIACKLCEAICPAQAITIEAGP 83



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGL--CQEACPVDAIVEGPNF 123


>gi|254797156|ref|YP_003081994.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str.
           Illinois]
 gi|254590388|gb|ACT69750.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str.
           Illinois]
          Length = 160

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 16/77 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 58  ERCIACKL--CEVICPAQAITIEAAPRESDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 115

Query: 56  KPDTEPGLELWLKINSE 72
               E     + + N E
Sbjct: 116 ---VEGPNFEFARENRE 129


>gi|261346110|ref|ZP_05973754.1| dimethylsulfoxide reductase, chain B [Providencia rustigianii DSM
           4541]
 gi|282565764|gb|EFB71299.1| dimethylsulfoxide reductase, chain B [Providencia rustigianii DSM
           4541]
          Length = 205

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           Y ++ +C  C +  CVE CP    +   E+ L +     C+ C  CE  CP  A + D +
Sbjct: 60  YYLSISCNHCSNPTCVEGCPTGAMHKRAEDGLVVVDQSICVGCRYCELRCPYGAPQFDEK 119

Query: 61  PGL 63
             L
Sbjct: 120 KKL 122


>gi|170748469|ref|YP_001754729.1| NADH dehydrogenase subunit I [Methylobacterium radiotolerans JCM
           2831]
 gi|226737401|sp|B1LUM8|NUOI_METRJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|170654991|gb|ACB24046.1| NADH-quinone oxidoreductase, chain I [Methylobacterium
           radiotolerans JCM 2831]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAI 117



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 21 CPVDCFYEGENFLAIHP--------DECIDCGVCEPECPVDAIKPDTEP 61
           P +  + G  F   H         + CI C +CE  CP  AI  +  P
Sbjct: 35 YPFEMGHRGPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCG--MCQEACPVDAIVEGPNF 123


>gi|297619129|ref|YP_003707234.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanococcus voltae A3]
 gi|297378106|gb|ADI36261.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanococcus voltae A3]
          Length = 602

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV +E C  CK   C+ + CP   F        I    C+ CG+C   C   AI+
Sbjct: 543 YVNSEKCNGCKL--CLRIGCPAISFNNETKKAEIDKSLCVGCGLCVDICKRSAIE 595


>gi|134046735|ref|YP_001098220.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664360|gb|ABO36006.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 658

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 23/86 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV  + C  C    C   CP++   E     G                  I  + CIDCG
Sbjct: 240 YVDEDICTGCG--ACAAACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTIDKEHCIDCG 297

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN 70
           +C   C  +A++ D +P     LKIN
Sbjct: 298 LCAKVCCAEAVRYDQKPQE---LKIN 320



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDA 54
             V  E C  CK   C  +CP +       +G          C  CG C   CP  A
Sbjct: 577 ATVNEEVCGGCKV--CALMCPYNAITYEEKDGHLVAVTDDVACKGCGSCAAACPSGA 631


>gi|153000588|ref|YP_001366269.1| electron transport complex protein RnfB [Shewanella baltica OS185]
 gi|160875224|ref|YP_001554540.1| electron transport complex protein RnfB [Shewanella baltica OS195]
 gi|217973445|ref|YP_002358196.1| electron transport complex protein RnfB [Shewanella baltica OS223]
 gi|304408662|ref|ZP_07390283.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|307305491|ref|ZP_07585239.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|151365206|gb|ABS08206.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS185]
 gi|160860746|gb|ABX49280.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS195]
 gi|217498580|gb|ACK46773.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS223]
 gi|304352483|gb|EFM16880.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|306911794|gb|EFN42219.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|315267417|gb|ADT94270.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS678]
          Length = 204

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DT 59
            Y+  + CI C  T C++ CPVD        +  +   +C  C +C   CPVD I     
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIPV 164

Query: 60  EPGLELW 66
            P L+ W
Sbjct: 165 TPNLKNW 171


>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +E C  C  + C  +CPV     + +    I+ ++CI CG C   C   AIK 
Sbjct: 572 SELCKGC--SKCSRICPVGAIDGKIKEPYIINQEKCIKCGACIESCAFAAIKE 622



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +G   + I  + C  C  C   CPV AI
Sbjct: 557 CPT-RTCQGLKVIEITSELCKGCSKCSRICPVGAI 590


>gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 618

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C   CPVD  +          I  + CI CG C   C  +A+
Sbjct: 567 ERCKACNV--CARNCPVDAVHGEVRKPETFYIDAEACIKCGTCATVCKFNAV 616



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           CP        +F  I  + C  C VC   CPVDA+  +       ++   +
Sbjct: 551 CPAGRCKALTDF-RIDQERCKACNVCARNCPVDAVHGEVRKPETFYIDAEA 600


>gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 613

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           V+ + C  C    C   CP       +     I+ + C  CG+C   C  +AI
Sbjct: 549 VLADACKGCG--RCSRECPTGAITGEKKMPFTINQEMCARCGLCISVCKFNAI 599



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           D C  CG C  ECP  AI  + +
Sbjct: 552 DACKGCGRCSRECPTGAITGEKK 574


>gi|296536148|ref|ZP_06898276.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC
           49957]
 gi|296263519|gb|EFH10016.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC
           49957]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPALAITIEAEPREDGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 118



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 62 ERCIACKLCEAVCPALAITIEAEPRED 88



 Score = 33.6 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGL--CEEACPVDAIVEGPNF 124


>gi|152986272|ref|YP_001345851.1| 4Fe-4S ferredoxin [Pseudomonas aeruginosa PA7]
 gi|150961430|gb|ABR83455.1| ferredoxin (4Fe-4S) [Pseudomonas aeruginosa PA7]
          Length = 83

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDT 59
          I  D 
Sbjct: 59 IPLDE 63


>gi|52549644|gb|AAU83493.1| heterodisulfide reductase subunit A and related polyferredoxins
           [uncultured archaeon GZfos29E12]
          Length = 895

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 19/86 (22%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL---------AIHP--------DECIDCG 44
             V  + C+ C    CV+VCPV+     E  +          +          D CI CG
Sbjct: 809 AVVDEQICVGCGV--CVDVCPVEAIELTEELVPVVTFGVATVVSAMKKVAKVGDGCIGCG 866

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN 70
            C   CP  A+        +L+ +++
Sbjct: 867 SCASYCPSGAMSLKHFRDRQLYAQLD 892


>gi|91789108|ref|YP_550060.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666]
 gi|123164661|sp|Q127Y0|NUOI_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91698333|gb|ABE45162.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666]
          Length = 165

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVDAI
Sbjct: 64  ERCIACKL--CEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEEACPVDAI 120



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 64 ERCIACKLCEAVCPALAITIESE 86


>gi|83643884|ref|YP_432319.1| ferredoxin [Hahella chejuensis KCTC 2396]
 gi|83631927|gb|ABC27894.1| Ferredoxin [Hahella chejuensis KCTC 2396]
          Length = 85

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +    GE    I P++C +C        C+  CPVD 
Sbjct: 1  MALMITDDCINCDV--CEPECPNEAISPGEEIYIIDPNKCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPLDPD 64


>gi|322835430|ref|YP_004215456.1| polyferredoxin [Rahnella sp. Y9602]
 gi|321170631|gb|ADW76329.1| putative polyferredoxin [Rahnella sp. Y9602]
          Length = 293

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 16 DCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C +VCP       E   + + P  CI CG C   CP  A +    P    +  
Sbjct: 31 ACADVCPTGAVTLNEEGMIEMDPQACIGCGYCLFNCPTGAPE-GIAPPQRHYRA 83



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+LC    C  VCP          L + P +C  CG CE  C   AI
Sbjct: 197 CVLCG--ACSRVCPEQAIRLDNLALTLDPVKCTGCGNCEAVCFDGAI 241


>gi|331231867|ref|XP_003328596.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309307586|gb|EFP84177.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 259

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 158 ERCIACKL--CEAICPAQAITIESETREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 214



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  ++E
Sbjct: 158 ERCIACKLCEAICPAQAITIESE 180


>gi|260576927|ref|ZP_05844909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020863|gb|EEW24177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 544

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 9   CILCKHT----DCVEVCPVDC-FYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           C+ C +      C  VCP +     G      I+ D C  CG+C  ECP  AI
Sbjct: 485 CLSCGNCFECDTCYGVCPDNAVIKLGSGMGFTINLDYCKGCGICAAECPCGAI 537


>gi|168186747|ref|ZP_02621382.1| polyferredoxin [Clostridium botulinum C str. Eklund]
 gi|169295268|gb|EDS77401.1| polyferredoxin [Clostridium botulinum C str. Eklund]
          Length = 294

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C + CP D      N   I   +C++CG+C  +CP  AI+
Sbjct: 216 CIGCGL--CAKACPKDAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQ 261



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  CV  C  D     +    ++ D C+ CG C   CP + I+
Sbjct: 144 GYGSCVSACKFDAIEIVDGIAKVNKDNCVACGACVSTCPKNIIE 187



 Score = 40.5 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           V  +NC+ C    CV  CP +                    G +   I    CI CG+C 
Sbjct: 166 VNKDNCVACG--ACVSTCPKNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCA 223

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP DAI  +    +  + K
Sbjct: 224 KACPKDAITMENNLPVIDYSK 244


>gi|134094633|ref|YP_001099708.1| putative iron-sulfur binding protein [Herminiimonas arsenicoxydans]
 gi|133738536|emb|CAL61581.1| putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 699

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           I C    C+E+C  +      N + ++P+ C  CG C   CP  A
Sbjct: 326 IGCN--ACIEICSAEAISHNGNHVKVNPNLCAGCGACTTVCPSGA 368



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV  CP     +  N   L      C+ CG+CE  CP +AI
Sbjct: 565 VNRDACTLC--MSCVGACPESALTDNANAPQLRFIEKNCVQCGLCEKTCPENAI 616



 Score = 40.5 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAI 55
           E+CI C    C+EVCP       +    I  D+C   G C   C  + AI
Sbjct: 199 ESCIRCN--ACIEVCPESAI---DLTYQIDLDKCRSHGDCVKACGSIGAI 243



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + ++ D C  C  C   CP  A+  +       +++ N
Sbjct: 563 VVVNRDACTLCMSCVGACPESALTDNANAPQLRFIEKN 600



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + CI C  C   CP  AI
Sbjct: 196 IDLESCIRCNACIEVCPESAI 216


>gi|48477969|ref|YP_023675.1| ferredoxin [Picrophilus torridus DSM 9790]
 gi|48430617|gb|AAT43482.1| ferredoxin [Picrophilus torridus DSM 9790]
          Length = 70

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C    CV +CP D  +  E  + I+ ++CI CG C   CP  AI  +
Sbjct: 16 CNYCG--ACVGMCPTDAIFMDETVIDINEEKCIKCGFCVVGCPTGAITAE 63


>gi|29348365|ref|NP_811868.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|253569265|ref|ZP_04846675.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
          1_1_6]
 gi|29340269|gb|AAO78062.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|251841284|gb|EES69365.1| glycyl-radical enzyme activating family protein [Bacteroides sp.
          1_1_6]
          Length = 299

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + + CI C    C+ VC  +  +   N L+IH + C DCG C   C   A
Sbjct: 50 IEDKCIHC--FSCITVCEYEVLFIDSNRLSIHRERCTDCGKCTERCTSGA 97


>gi|325261657|ref|ZP_08128395.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
 gi|324033111|gb|EGB94388.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
          Length = 400

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           Y+    C  C    C +VCP DC      ++  I   +C  CG C P C  +AI
Sbjct: 326 YIDPRLCSGCGD--CADVCPKDCIDGKPKYIYMIDDFDCDRCGKCIPGCSEEAI 377



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 21  CPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP   CF      + I P  C  CG C   CP D I
Sbjct: 314 CPAGVCFS--AQTIYIDPRLCSGCGDCADVCPKDCI 347


>gi|310780615|ref|YP_003968946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309749938|gb|ADO84598.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 104

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CVEVCP +     + F      P EC DC  C  ECPV AI+
Sbjct: 10 CIGC--RLCVEVCPGNLISLDKKFKAEIYDPRECWDCTACMKECPVQAIE 57


>gi|308270150|emb|CBX26762.1| Ferredoxin-2 [uncultured Desulfobacterium sp.]
          Length = 95

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDT 59
          T+ CI C    C+EVCP   F        I + D C++CG C   CP  AI  D+
Sbjct: 17 TKKCIGCG--RCLEVCPHQVFSLAGKKAIITNFDACMECGACAINCPSTAIFVDS 69


>gi|297493958|gb|ADI40701.1| NADH dehydrogenase Fe-S protein 8 [Miniopterus schreibersii]
          Length = 166

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG C+  CPVDAI
Sbjct: 78  ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 134



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 78  ERCIACKLCEAVCPAQAITIEAEPRAD 104



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 119 CIYCGF--CQEACPVDAIVEGPNF 140


>gi|261252995|ref|ZP_05945568.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891]
 gi|260936386|gb|EEX92375.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891]
          Length = 553

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KPDTEPGL--ELWLK 68
                     + +++
Sbjct: 233 HYALPNPQDTQKFIE 247



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +   +   L     +CI CG+C   CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGSSPSLQFIEQDCIQCGLCTKACP 462



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|269863568|ref|XP_002651269.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220064840|gb|EED42787.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 296

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 4  VVTENCI--LCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C    C   +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 16 VNEELCKPDKC-AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|163759532|ref|ZP_02166617.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43]
 gi|162283129|gb|EDQ33415.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 117

Query: 56  ------KPDTEPGLELWLKINSEYA 74
                 +  TE   EL+   +   A
Sbjct: 118 VEGPNFEFATETREELYYDKDRLLA 142


>gi|54261777|ref|NP_998304.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Danio rerio]
 gi|37194660|gb|AAH58299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|41107574|gb|AAH65459.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|220678768|emb|CAX13299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
          Length = 210

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|77919906|ref|YP_357721.1| Fe binding transcriptional regulator FhlA [Pelobacter
          carbinolicus DSM 2380]
 gi|77545989|gb|ABA89551.1| sigma54 specific transcriptional regulator, Fis family
          [Pelobacter carbinolicus DSM 2380]
          Length = 747

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 1  MTYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M ++ T+   C  C    CV  CPV           + P  CI CG C   C   A
Sbjct: 1  MGHIQTDTQRCRRC--YACVRHCPVKAIRVTRQGTDLSPGRCIGCGRCLQICTQQA 54


>gi|75410723|sp|Q9AIX6|BOXA_AZOEV RecName: Full=Benzoyl-CoA oxygenase component A; AltName:
          Full=Benzoyl-CoA 2,3-dioxygenase subunit A; AltName:
          Full=Benzoyl-CoA dioxygenase reductase component
 gi|12655805|gb|AAK00600.1|AF220510_2 BoxA [Azoarcus evansii]
 gi|23664440|gb|AAN39377.1| benzoyl-CoA oxygenase component A [Azoarcus evansii]
          Length = 414

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E+CPVD          +  + C  C  C   CP  AI
Sbjct: 19 EICIRCN--TCEEICPVDAITHDSRNYVVKFETCNGCLACISPCPTGAI 65



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA----------TQWPNITTKK 84
          I P+ CI C  CE  CPVDAI  D+   +  +   N   A            W N+    
Sbjct: 16 IDPEICIRCNTCEEICPVDAITHDSRNYVVKFETCNGCLACISPCPTGAIDSWRNVDKAT 75

Query: 85 E-SLPSAAKMDGVKQ 98
            SL      D +  
Sbjct: 76 PHSLADQYSWDYLPD 90


>gi|58699331|ref|ZP_00374109.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534154|gb|EAL58375.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 155

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 54  ERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 110



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 54 ERCIACKLCEVICPAQAIVIEAEERED 80



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 95  CIYCGL--CQEACPVDAIVEGPNF 116


>gi|312621606|ref|YP_004023219.1| hypothetical protein Calkro_0500 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202073|gb|ADQ45400.1| protein of unknown function DUF362 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 375

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNACPAQAIEMRSRKAYVDLKKCIRCYCCHELCPAKAIK 363


>gi|308048646|ref|YP_003912212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
          balearica DSM 9799]
 gi|307630836|gb|ADN75138.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
          balearica DSM 9799]
          Length = 83

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  V+ ++CI C    C   CP      GE    I PD C +C        C   CP+D 
Sbjct: 1  MALVILDSCINCD--MCEPECPNAAITMGEEIYEIDPDRCTECVGHYDKPTCISVCPIDC 58

Query: 55 IKPDTEP 61
          I+ D E 
Sbjct: 59 IEVDPEH 65


>gi|302548141|ref|ZP_07300483.1| LOW QUALITY PROTEIN: formate dehydrogenase, iron-sulfur subunit
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302465759|gb|EFL28852.1| LOW QUALITY PROTEIN: formate dehydrogenase, iron-sulfur subunit
           [Streptomyces himastatinicus ATCC 53653]
          Length = 260

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVD 53
           ++ C  C H  C++VCP    +  E   + +  D C  CG C P CP  
Sbjct: 102 SDVCKHCTHAACLDVCPTGSLFRTEFGTVVVQEDICNGCGYCVPACPYG 150


>gi|289192298|ref|YP_003458239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938748|gb|ADC69503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 657

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENF-------------LAIHPDECIDCG 44
           YV    C  C    C  VCP++   E     G                  I  D CI CG
Sbjct: 239 YVDENICTGCG--ACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTIDMDHCIRCG 296

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +CE  C   AIK D +P  
Sbjct: 297 LCEKACGPGAIKYDQKPEE 315



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECIDCGVCEPECPVDA 54
             V  + C  C    C ++CP +     E +  L   ++   C  CG C   CP  A
Sbjct: 576 AVVDEDVCGGC--QVCAKMCPYNAITYVEKDGHLVAQVNDVACKGCGACAGACPSGA 630


>gi|255528470|ref|ZP_05395261.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255507836|gb|EET84285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 343

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL-ELWL 67
           C  C    C + CP      G     I+ D+C+ C  C   C   A+       L + + 
Sbjct: 191 CKGCG--SCAKNCPEKAIVMGS-KAKINKDKCVGCAACMTTCNFGAVSNSWLASLSKSFN 247

Query: 68  KINSEYA 74
           +  +EYA
Sbjct: 248 ERLAEYA 254


>gi|150396121|ref|YP_001326588.1| NADH dehydrogenase subunit I [Sinorhizobium medicae WSM419]
 gi|150027636|gb|ABR59753.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          P+   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PISPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84


>gi|34556813|ref|NP_906628.1| putative nitrite reductase, formate-dependent, Fe-S centers
           [Wolinella succinogenes DSM 1740]
 gi|34482528|emb|CAE09528.1| PUTATIVE NITRITE REDUCTASE, FORMATE-DEPENDENT, FE-S CENTERS
           [Wolinella succinogenes]
          Length = 225

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    ++ E    + ++P++CI C  C   CP D
Sbjct: 95  SCQQCEDAPCVSVCPTKACHKDEQTGIVTMNPEDCIACKYCIVACPYD 142


>gi|146278034|ref|YP_001168193.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025]
 gi|145556275|gb|ABP70888.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17025]
          Length = 167

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 122



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 66 ERCIACKLCEAVCPAQAITIDAEPRED 92


>gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
 gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
          Length = 597

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           +TY +  E C  C    C   CP +C    +N    I  + CI CG C   C   A+
Sbjct: 540 LTYSIDAEKCKKCGL--CARNCPANCISGNKNTPYVIDGERCIRCGSCMDSCKFGAV 594


>gi|313157716|gb|EFR57127.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 384

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV 52
          +C  C    CV+ CP  C  + E+   F+   +    C+ CG+CE  CPV
Sbjct: 9  DCCGCN--ACVQKCPQQCIGQSEDAEGFIYPQVDKARCVGCGLCEKVCPV 56


>gi|301063959|ref|ZP_07204425.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [delta
           proteobacterium NaphS2]
 gi|300441930|gb|EFK06229.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [delta
           proteobacterium NaphS2]
          Length = 613

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C    H DC+    CP   + EG + + I  + CI C VC   CP +AI P
Sbjct: 562 DKCRN--HRDCLNFLACPA-MYLEG-DQVEIDKNTCIGCTVCAQVCPENAIVP 610


>gi|297539218|ref|YP_003674987.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methylotenera sp. 301]
 gi|297258565|gb|ADI30410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylotenera sp. 301]
          Length = 83

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y+GE    I P++C +C        C+  CP+D 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAIYQGEEIYEIDPNKCTECVGHYDKPQCQIVCPIDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNGAIYQGEE 29


>gi|260448069|gb|ACX38491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|315137485|dbj|BAJ44644.1| conserved hypothetical protein [Escherichia coli DH1]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|317047962|ref|YP_004115610.1| electron transport complex, RnfABCDGE type subunit B [Pantoea sp.
           At-9b]
 gi|316949579|gb|ADU69054.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           At-9b]
          Length = 192

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 116 NCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 163



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|296123295|ref|YP_003631073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015635|gb|ADG68874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 594

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKP 57
           M +V T  C  C    C+  CPV+ + E + F  I     D+C  C  C   CP +  K 
Sbjct: 133 MQHV-TAACHHCLEPACMTACPVNAY-EKDAFTGIVRHLDDQCFGCQYCTLACPYNVPKY 190


>gi|225181697|ref|ZP_03735136.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167568|gb|EEG76380.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT
           1]
          Length = 370

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++CI CK   C   CP       E    I    CI C  C+  CP  AI+
Sbjct: 313 DSCISCK--ICQHACPAGAITM-EEAAQIEEGACIRCYCCQEMCPEGAIE 359



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 31  NFLAIHP----DECIDCGVCEPECPVDAIKPDTEPGLEL 65
           N L  HP    D CI C +C+  CP  AI  +    +E 
Sbjct: 302 NQLTAHPKVKVDSCISCKICQHACPAGAITMEEAAQIEE 340


>gi|218887758|ref|YP_002437079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758712|gb|ACL09611.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 180

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C   CP   + + +     ++ D CI CG C   CPVDAI  D E GL
Sbjct: 54  CLACNPAPCALACPTGAYVQRKGGGVKVNRDLCIRCGNCAAACPVDAIHLDGETGL 109



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + CI C   +C   CPVD  + +GE  L   P  CI CG C P CP   I+
Sbjct: 81  VNRDLCIRCG--NCAAACPVDAIHLDGETGL---PYVCIHCGRCVPFCPHACIE 129


>gi|220917624|ref|YP_002492928.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955478|gb|ACL65862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 326

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCP    + E +  + +  D CI C  C   CP  A
Sbjct: 181 CQQCRNPPCVKVCPTQATWKEQDGIVVVDYDWCIGCRCCMSACPYGA 227


>gi|157738050|ref|YP_001490734.1| ferredoxin [Arcobacter butzleri RM4018]
 gi|315636401|ref|ZP_07891647.1| ferredoxin [Arcobacter butzleri JV22]
 gi|157699904|gb|ABV68064.1| ferredoxin [Arcobacter butzleri RM4018]
 gi|315479314|gb|EFU70001.1| ferredoxin [Arcobacter butzleri JV22]
          Length = 84

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C E CP     EG+    I PD C +C        C   CPVD 
Sbjct: 1  MSLMITDECIACD--ACREECPNYAIEEGDPIYMIDPDRCTECVGHYEEPQCVEVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D +   
Sbjct: 59 IIIDPDNEE 67


>gi|150400807|ref|YP_001324573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013510|gb|ABR55961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 250

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C+ C    CVE CP++   E    + I    C+ CG CE  CPV AI+
Sbjct: 195 VDNDVCVKCLV--CVEECPINIIKEIAEGVEIDKSNCMYCGRCEGSCPVHAIE 245



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          +V ++CI C    C   CPVD   +        I PD+C+ C +C   CPVD IK
Sbjct: 42 IVPDDCIRCNL--CYIECPVDAITKPTVRKPAEIIPDKCVKCEICAMTCPVDTIK 94



 Score = 41.7 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++  E CI C    C + CP +    E      I  ++C+ C  C   CP   I  D E 
Sbjct: 127 HIDVEKCIFCGL--CDKFCPTNAITVERRKSFDIDLNKCVGCNACASVCPKKIITVDNEL 184

Query: 62  GLELW 66
           G   +
Sbjct: 185 GELPF 189



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 30/93 (32%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--------------------------NFLAIHP 37
           ++ + C+ C+   C   CPVD     +                          N   I  
Sbjct: 73  IIPDKCVKCE--ICAMTCPVDTIKVLDANAKIENHSVVYTIKEQDTEHRTIKLNNYHIDV 130

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           ++CI CG+C+  CP +AI  +     +  + +N
Sbjct: 131 EKCIFCGLCDKFCPTNAITVERRKSFD--IDLN 161



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
          E ++ I PD+CI C +C  ECPVDAI
Sbjct: 37 EKYICIVPDDCIRCNLCYIECPVDAI 62



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C    C  VCP                  +++  D C+ C VC  ECP++ IK 
Sbjct: 163 CVGCN--ACASVCPKKIITVDNELGELPFNKSISVDNDVCVKCLVCVEECPINIIKE 217


>gi|317488339|ref|ZP_07946899.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325830747|ref|ZP_08164131.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
 gi|316912546|gb|EFV34095.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|325487154|gb|EGC89597.1| putative dimethylsulfoxide reductase, chain B [Eggerthella sp.
           HGA1]
          Length = 191

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           T +C  C    CV  CP    ++ ++    H  D C+ C  C   CP  A + D +  +
Sbjct: 55  TVSCNHCDDPACVAGCPTGAMFKSDDGTVQHIDDRCVVCRNCMITCPYGAPQFDEDENM 113



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 17/71 (23%)

Query: 5   VTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGV---------CEPECPVD 53
           + + C++C   +C+  CP     F E EN +     +C  C           C   CP+ 
Sbjct: 86  IDDRCVVC--RNCMITCPYGAPQFDEDENMIV----KCDACKALREDGRNPVCADACPMR 139

Query: 54  AIKPDTEPGLE 64
           AI+      L 
Sbjct: 140 AIEFGDVDELR 150


>gi|315615550|gb|EFU96182.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 3431]
          Length = 175

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 53  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 110

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 111 LTPDFEMGEY 120


>gi|307721539|ref|YP_003892679.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Sulfurimonas autotrophica DSM 16294]
 gi|306979632|gb|ADN09667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Sulfurimonas autotrophica DSM 16294]
          Length = 366

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          CVEVCPV+  +   + ++  P EC+ CG C+  CP  A   D 
Sbjct: 24 CVEVCPVETIHLENSTISFTPSECVGCGGCDAVCPTAAYTLDD 66



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 4/44 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPEC 50
           C  C    C  +CP            I+  P  C+ C  C   C
Sbjct: 260 CTNC--QMCYRICPTGALSSDVRGSVINFNPLACVQCHSCHDVC 301


>gi|289524083|ref|ZP_06440937.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502739|gb|EFD23903.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 305

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    C  VCP+    E +    I    CI CG C   CP DA
Sbjct: 61  CMHCG--TCAHVCPMGAI-EFDGIPIIRRSMCIACGSCSAACPSDA 103



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          CP+ C           G+  +     +C+ CG C   CP+ AI+ D
Sbjct: 35 CPLRCWWCHNPEGIDSGKELMYF-EYKCMHCGTCAHVCPMGAIEFD 79


>gi|254459320|ref|ZP_05072741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Campylobacterales bacterium GD 1]
 gi|207083933|gb|EDZ61224.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Campylobacterales bacterium GD 1]
          Length = 522

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
           +C  C   +C++ CP +      E  + +H D  CI C  C   CP +      E
Sbjct: 88  SCNHCIDPECLKGCPTNSYIKISETGIVVHDDDTCIGCQYCTWNCPYEVPTYHEE 142


>gi|124516667|gb|EAY58175.1| putative ferredoxin [Leptospirillum rubarum]
 gi|206603573|gb|EDZ40053.1| Putative ferredoxin [Leptospirillum sp. Group II '5-way CG']
          Length = 84

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  + +NCI C    C+  CP D   EG+    I P+ C +C        C   CP+D 
Sbjct: 1  MSLKIADNCISCG--ACLPECPNDAISEGDPLYIIDPELCTECVGFHEDPQCAAVCPIDE 58

Query: 55 IKPDTEPGLELWLKINSEYATQWP 78
                   E   ++ ++ A   P
Sbjct: 59 CCILDPDYQETQEELLAKKARIHP 82


>gi|94264895|ref|ZP_01288669.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454665|gb|EAT04933.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 226

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C +  C   CP    ++  EN L +H P  C+ C  C   CP DAI         ++
Sbjct: 53  CNHCDNAPCTRACPTKAMHKVKENGLTLHEPRRCVGCRACMVSCPYDAITFVRYEPHAMF 112

Query: 67  LKINSEYATQWPNIT 81
            + N E     P IT
Sbjct: 113 KE-NQELV---PGIT 123


>gi|3355643|emb|CAA08780.1| tungsten formylmethanofuran dehydrogenase subunit fwdF
           [Methanothermobacter wolfeii]
          Length = 349

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 12/64 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP D                  + I  D CI CG+CE  CPVDAI+
Sbjct: 113 ETCIQCK--ACETACPQDAITITRELPERKDLVTGEIEIDKDTCIYCGMCEEMCPVDAIE 170

Query: 57  PDTE 60
            D +
Sbjct: 171 IDHQ 174



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 18/67 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           V  + C+ C    C  +CPVD                   E      I P+ C++CG C+
Sbjct: 189 VDEDKCVHCG--ICKRICPVDAIMQVCRICPYGEYEIKTPEVTGTSYIDPELCVNCGWCQ 246

Query: 48  PECPVDA 54
             CPVDA
Sbjct: 247 EICPVDA 253



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           + C  C+   CV VCP +          GE    +H DE  CI CG CE  CPV AI
Sbjct: 269 DTCQACE--TCVMVCPCNVLSFPKPEKPGEKTTKLHKDERFCIYCGACERSCPVTAI 323



 Score = 41.3 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C E+CPVD                   + +  D+C+ CG+C+  CPVDAI
Sbjct: 152 DTCIYCG--MCEEMCPVDAIEIDHQTPSSASPVVATDIRVDEDKCVHCGICKRICPVDAI 209



 Score = 40.9 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y+  E C+ C    C E+CPVD       +EGE  L I  D C  C  C   CP + + 
Sbjct: 232 SYIDPELCVNCGW--CQEICPVDAATVTKPFEGE--LIIDQDTCQACETCVMVCPCNVLS 287

Query: 57  PDTEP 61
                
Sbjct: 288 FPKPE 292



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 17/72 (23%)

Query: 9   CILCKHTDCVEVCPVDC---------FYEGENF------LAIHPDECIDCGVCEPECPVD 53
           C+LC    C  +CP              E   +        I  + CI C  CE  CP D
Sbjct: 71  CVLCG--MCSSICPFQALDLQIDGTSIKELAEYPKIIKSAEIDDETCIQCKACETACPQD 128

Query: 54  AIKPDTEPGLEL 65
           AI    E     
Sbjct: 129 AITITRELPERK 140



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVD 53
          + ++C+      C E+CPV               + ++ +AI  ++C+ CG+C   CP  
Sbjct: 25 IFQDCLCAVCGLCGEICPVSAIEVNPTGAMVRTEQEKSKIAIDENKCVLCGMCSSICPFQ 84

Query: 54 A 54
          A
Sbjct: 85 A 85


>gi|74313444|ref|YP_311863.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|209920340|ref|YP_002294424.1| putative oxidoreductase [Escherichia coli SE11]
 gi|254037929|ref|ZP_04871987.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331643574|ref|ZP_08344705.1| putative electron transport protein YgfS [Escherichia coli H736]
 gi|331678870|ref|ZP_08379544.1| putative electron transport protein YgfS [Escherichia coli H591]
 gi|887836|gb|AAA83067.1| ORF_f163 [Escherichia coli]
 gi|73856921|gb|AAZ89628.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|209913599|dbj|BAG78673.1| putative oxidoreductase [Escherichia coli SE11]
 gi|226839553|gb|EEH71574.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|331037045|gb|EGI09269.1| putative electron transport protein YgfS [Escherichia coli H736]
 gi|331073700|gb|EGI45021.1| putative electron transport protein YgfS [Escherichia coli H591]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|332799384|ref|YP_004460883.1| NADP-dependent oxidoreductase domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332697119|gb|AEE91576.1| NADP-dependent oxidoreductase domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 315

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + C+ C   +CV+ C  +  +       ++PD CI CG C   CP   IK
Sbjct: 264 IEDWCVGCG--ECVKHCLYNALHVVNGHSTVNPDACILCGYCSGYCPEFCIK 313


>gi|332280430|ref|ZP_08392843.1| 4Fe-4S binding protein [Shigella sp. D9]
 gi|332102782|gb|EGJ06128.1| 4Fe-4S binding protein [Shigella sp. D9]
          Length = 163

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMISIQSLPGD 110


>gi|331655209|ref|ZP_08356208.1| putative electron transport protein YsaA [Escherichia coli M718]
 gi|331047224|gb|EGI19302.1| putative electron transport protein YsaA [Escherichia coli M718]
          Length = 159

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 107


>gi|302389274|ref|YP_003825095.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199902|gb|ADL07472.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 345

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CI     DC +VCPV      EN L  I  ++C  CG+C  ECP   I
Sbjct: 144 CIG--FGDCAKVCPVGAITMSENGLPVIDEEKCTGCGLCAKECPKQVI 189



 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ +NCI C  T C + CPV+    E +    ++ + CI C +CE +CP  AI
Sbjct: 274 VINDNCIGC--TICAKNCPVNAISGEVKKKHEVNAELCIGCSICEEKCPKGAI 324



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C  C    CVE CP         E   A+  D CI C +C   CPV+AI  + +    
Sbjct: 246 EKCRNC--MKCVEKCPTKAITSAFAERKKAVINDNCIGCTICAKNCPVNAISGEVKKKH- 302

Query: 65  LWLKINSEY 73
              ++N+E 
Sbjct: 303 ---EVNAEL 308



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP D  +   N   I  ++C +C  C  +CP  AI
Sbjct: 219 CIACKQ--CEKACPFDAIHVVNNVAIIDYEKCRNCMKCVEKCPTKAI 263


>gi|293453883|ref|ZP_06664302.1| electron transporter HydN [Escherichia coli B088]
 gi|331679654|ref|ZP_08380324.1| putative electron transport protein YsaA [Escherichia coli H591]
 gi|291322009|gb|EFE61440.1| electron transporter HydN [Escherichia coli B088]
 gi|331072826|gb|EGI44151.1| putative electron transport protein YsaA [Escherichia coli H591]
          Length = 159

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 107


>gi|312113372|ref|YP_004010968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218501|gb|ADP69869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 249

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C +  CV+VCP    F   +  + +    CI C  C   CP  A     EP  + 
Sbjct: 112 CQHCANAPCVDVCPTGASFKRADGIVLVDRHICIGCRYCMMACPYKARSFVHEPVADQ 169


>gi|262369576|ref|ZP_06062904.1| ferredoxin [Acinetobacter johnsonii SH046]
 gi|262315644|gb|EEY96683.1| ferredoxin [Acinetobacter johnsonii SH046]
          Length = 84

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M   +T+ CI C    C+  CP    +EG+    I    C +C        C   CP+  
Sbjct: 1  MALQITDACINCD--MCLPECPNTAIFEGDKIYEIDVSRCTECVGFYDTQTCVDVCPIAC 58

Query: 55 IKPDTEP 61
          I+P  E 
Sbjct: 59 IEPHPEH 65


>gi|296808641|ref|XP_002844659.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238844142|gb|EEQ33804.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 231

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 130 ERCIACKL--CEAICPAQAITIEAEERVDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 187

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 188 ESP----------NAEYATETREELLYNKEKLLANGDKWE 217


>gi|222085585|ref|YP_002544115.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium
           radiobacter K84]
 gi|221723033|gb|ACM26189.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium
           radiobacter K84]
          Length = 165

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 120



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 44 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 86



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 105 CIYCGF--CQEACPVDAIVEGPNF 126


>gi|288819160|ref|YP_003433508.1| fumarate reductase subunit E [Hydrogenobacter thermophilus TK-6]
 gi|197724767|dbj|BAG70313.1| fumarate reductase, E subunit [Hydrogenobacter thermophilus]
 gi|288788560|dbj|BAI70307.1| fumarate reductase subunit E [Hydrogenobacter thermophilus TK-6]
 gi|308752744|gb|ADO46227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 183

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
            + +  NC  C+   CV  CP     + ++ +    +  CI C  C   CP  AI
Sbjct: 52  AFFLPMNCFHCEPAPCVFACPTSAMRKRDDGIVYLQEMLCIGCKACIIACPYGAI 106


>gi|209885060|ref|YP_002288917.1| i subunit of NADH-quinone oxidoreductase [Oligotropha
           carboxidovorans OM5]
 gi|226737405|sp|B6JH51|NUOI_OLICO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209873256|gb|ACI93052.1| i subunit of NADH-quinone oxidoreductase [Oligotropha
           carboxidovorans OM5]
          Length = 162

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|91782519|ref|YP_557725.1| ferredoxin [Burkholderia xenovorans LB400]
 gi|91686473|gb|ABE29673.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           xenovorans LB400]
          Length = 279

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT----EPGL 63
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I          G 
Sbjct: 89  CIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCIALPPVTGQATGW 146

Query: 64  ELWLKINSEYATQ 76
             W +  ++ A +
Sbjct: 147 AAWSQAQADAARE 159



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 83  VIDEQVCIGCTLCMQACPVDAI 104


>gi|85857982|ref|YP_460184.1| iron-sulfur protein associated with hydrogenases [Syntrophus
           aciditrophicus SB]
 gi|85721073|gb|ABC76016.1| iron-sulfur protein associated with hydrogenases [Syntrophus
           aciditrophicus SB]
          Length = 280

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           Y+    C  C    C   CPVD     +  +  I  D+CI CG C   CP
Sbjct: 199 YIDPGKCQAC--MTCARKCPVDAIISAKGQVHVIDQDKCIKCGTCFEVCP 246



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             E      I P +C  C  C  +CPVDAI
Sbjct: 192 IREAP-TYYIDPGKCQACMTCARKCPVDAI 220


>gi|78187885|ref|YP_375928.1| polysulfide reductase, subunit B, putative [Chlorobium luteolum DSM
           273]
 gi|78167787|gb|ABB24885.1| polysulfide reductase, subunit B, putative [Chlorobium luteolum DSM
           273]
          Length = 199

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C++T C+  CP    +  E+ +  ++ D CI C  C   CP DA        
Sbjct: 60  CMHCENTPCLSACPTGATFMTEDGIVKVNYDRCIGCYACCIACPYDARYAYDRED 114


>gi|7416779|dbj|BAA94028.1| hypothetical electron transfer protein with 4 FeS centers
           [Rubrivivax gelatinosus]
          Length = 321

 Score = 50.9 bits (121), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C +  CV+ CP    + E +  + +  D CI C  C   CP  A   +         
Sbjct: 171 CMQCDNPPCVKACPTKATWKEPDGIVVVDYDWCIGCRYCMTACPYWARHFNWTEPQIPAA 230

Query: 68  KIN 70
           + N
Sbjct: 231 EFN 233


>gi|332798543|ref|YP_004460042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332696278|gb|AEE90735.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
          Length = 139

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E C+LC +  C+  CP     + E    I  +   C  CG+CE  CP  AI+  T P +
Sbjct: 55  EQCMLCTNPRCIAACPTGALSKDEESGIIKVNKMACTGCGLCEDACPFGAIELHTFPTM 113


>gi|327401724|ref|YP_004342563.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327317232|gb|AEA47848.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 756

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C  C    C   CP     + ++F  + P  C  CG+C   CP +AI+
Sbjct: 561 VDQDLCSAC--RICEAACPHGAI-DVKDFAYVDPAFCQGCGLCMAACPSNAIQ 610



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 32/78 (41%), Gaps = 21/78 (26%)

Query: 3   YVVTENCILCKHTDCVEVCPVD------CFY------EGENFLAIHPD------ECIDCG 44
           YV    CI C    C EVCPVD      C        + E  LAI PD      EC  CG
Sbjct: 237 YVDPSRCISCG--KCSEVCPVDVENSFDCGMSKRKAIDKEFKLAI-PDIYNIVEECTKCG 293

Query: 45  VCEPECPVDAIKPDTEPG 62
            C   CP +AI  D E  
Sbjct: 294 ECVEACPTNAINLDAEEE 311


>gi|260587325|ref|ZP_05853238.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Blautia hansenii DSM 20583]
 gi|260542192|gb|EEX22761.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Blautia hansenii DSM 20583]
          Length = 879

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  CK     + CP++     +  + I  + C  CG C  +CP +A   D   G  ++
Sbjct: 734 EKCRGCKICRVEKNCPINVAKVVDGKIVIDENSCNHCGRCIGKCPFNA-FEDYTNGYRIY 792

Query: 67  L 67
           +
Sbjct: 793 I 793


>gi|225679000|gb|EEH17284.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 213

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 128 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAI 184



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  + E   +
Sbjct: 109 PISPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEERED 154


>gi|167622511|ref|YP_001672805.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352533|gb|ABZ75146.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 236

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIAACPYDARFINKETDVAD 165

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 166 NCDFCLNSKLA 176


>gi|124027268|ref|YP_001012588.1| Fe-S cluster-containing hydrogenase component 1 [Hyperthermus
           butylicus DSM 5456]
 gi|123977962|gb|ABM80243.1| Fe-S cluster-containing hydrogenase component 1 [Hyperthermus
           butylicus DSM 5456]
          Length = 215

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
            Y +   C+ C++  C  VCP    Y+ +  + +    +CI C  C   CP  A
Sbjct: 63  PYFI--QCMHCENPPCAAVCPTGATYKTKEGVVMLDHSKCIGCRACVIACPYAA 114


>gi|116747465|ref|YP_844152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116696529|gb|ABK15717.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1116

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 3    YVVT---ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDA 54
            Y V+     C  C    C++ CP           G +   +    C  CG C   CP DA
Sbjct: 1039 YTVSVDESRCRGCG--RCLQACPYQAISFRKNGLGGSHAVVDEALCKGCGNCISVCPSDA 1096

Query: 55   IKPDTEPGLELWLK 68
               D+    +L+L+
Sbjct: 1097 --ADSPYRDQLFLE 1108



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDA 54
           N   + P+ C  CG C   CP  A
Sbjct: 102 NPTFVDPERCTLCGRCAEVCPAAA 125


>gi|86157848|ref|YP_464633.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774359|gb|ABC81196.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 243

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  CV+ CP    + E +  + I  D CI C  C   CP  A
Sbjct: 98  CQQCRNPPCVKACPTQATWKEQDGIVVIDYDWCIGCRCCMSACPYGA 144


>gi|16081628|ref|NP_393993.1| ferredoxin 2[4Fe-4S] related protin [Thermoplasma acidophilum DSM
          1728]
 gi|13124198|sp|P82853|FER2_THEAC RecName: Full=Probable ferredoxin TA0517
 gi|10639685|emb|CAC11657.1| ferredoxin 2[4Fe-4S] related protin [Thermoplasma acidophilum]
          Length = 70

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C    CV +CP D  +  E  + IH ++CI+CG C   CP  AI  +
Sbjct: 17 CNYCG--ACVGMCPTDAIWLDETVIKIHEEKCIECGFCIVGCPTGAITAE 64


>gi|294678804|ref|YP_003579419.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB
           1003]
 gi|17380288|sp|Q07394|RNFB_RHOCA RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|216928|dbj|BAA02787.1| ORFU3 product, potential iron-sulfur protein [Rhodobacter
           capsulatus]
 gi|435526|emb|CAA51400.1| rnfB [Rhodobacter capsulatus]
 gi|1905809|emb|CAA72669.1| RnfB protein [Rhodobacter capsulatus]
 gi|294477624|gb|ADE87012.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB
           1003]
 gi|742356|prf||2009377C rnfB protein
          Length = 187

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            +V  ++C  C    C + CP D    G   +  +  D CI C  C   CP +AI    +
Sbjct: 105 AFVFEDHCTGC--QKCFKRCPTDAIVGGAKQIHTVVMDACIGCDACIEVCPTEAIVSRVK 162

Query: 61  P 61
           P
Sbjct: 163 P 163


>gi|327310272|ref|YP_004337169.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20]
 gi|326946751|gb|AEA11857.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20]
          Length = 588

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 7  ENC--ILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++C    C H +C++ CPV+         E      I    CI CG+C  +CP  AI
Sbjct: 9  DSCDPKKCGH-ECIKYCPVNKSGKVIWIDENTGKAVISEKLCIGCGICVHKCPFSAI 64


>gi|297519363|ref|ZP_06937749.1| putative oxidoreductase Fe-S binding subunit [Escherichia coli
           OP50]
          Length = 314

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C  C +  CV  CPV+      + + +   +CI C  C   CP   ++       +
Sbjct: 55  ACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVVEMVDTIAQK 111


>gi|326790371|ref|YP_004308192.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium lentocellum DSM 5427]
 gi|326541135|gb|ADZ82994.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium lentocellum DSM 5427]
          Length = 575

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E CI C    C+++ CP     +GE  ++I+   C  CG+C   CP  AI  + +
Sbjct: 525 ETCIKCG--MCLKLGCP--AICKGEEGISINTALCAGCGLCASVCPKQAISKEVK 575


>gi|260892089|ref|YP_003238186.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex
           degensii KC4]
 gi|260864230|gb|ACX51336.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex
           degensii KC4]
          Length = 591

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    C+E+ CP     +     + I P  C+ CG+C   CP  A++
Sbjct: 536 EVCRGCGL--CLELGCPALALKDRSRRKIVIDPLLCVGCGLCAQVCPFGALE 585


>gi|227821627|ref|YP_002825597.1| NADH dehydrogenase subunit I [Sinorhizobium fredii NGR234]
 gi|227340626|gb|ACP24844.1| NADH dehydrogenase, chain I [Sinorhizobium fredii NGR234]
          Length = 163

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|254491636|ref|ZP_05104815.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463114|gb|EEF79384.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Methylophaga thiooxydans DMS010]
          Length = 172

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +  DEC  C +C   CPVD I
Sbjct: 97  DRCIGC--TLCIQACPVDAILGAAKHMHTVIADECTGCELCVEPCPVDCI 144



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 24  DCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +C  E    L  I  D CI C +C   CPVDAI
Sbjct: 82  ECGVEKPKTLAVIDEDRCIGCTLCIQACPVDAI 114



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C+   CVE CPVDC 
Sbjct: 121 MHTVIADECTGCEL--CVEPCPVDCI 144


>gi|157374544|ref|YP_001473144.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316918|gb|ABV36016.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 205

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +  + +C  C H  CV+ CP    ++   +  + I    C+ C  C   CP DA + D+
Sbjct: 63  AHYTSISCNHCSHPVCVKACPTGACHKRKSDGLVHIEASLCVGCQSCSRACPYDAPQFDS 122

Query: 60  EPG 62
           E G
Sbjct: 123 ERG 125


>gi|148978911|ref|ZP_01815231.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrionales
           bacterium SWAT-3]
 gi|145962109|gb|EDK27395.1| anaerobic dimethyl sulfoxide reductase chain B [Vibrionales
           bacterium SWAT-3]
          Length = 213

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +Y ++  C  C +  CV+VCP     + +    + +    CI C  C   CP    + + 
Sbjct: 60  SYYLSIACNHCTNPACVKVCPSGAMRKRDEDGLVVVDESVCIGCQHCSNACPYGVPQYNA 119

Query: 60  EPGL 63
           + G 
Sbjct: 120 KKGH 123


>gi|114327958|ref|YP_745115.1| NADH dehydrogenase subunit I [Granulibacter bethesdensis CGDNIH1]
 gi|122327080|sp|Q0BSL0|NUOI_GRABC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114316132|gb|ABI62192.1| NADH-quinone oxidoreductase chain I [Granulibacter bethesdensis
           CGDNIH1]
          Length = 162

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG+CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPALAITIEAEPRADGSRRTTRYDIDMTKCIYCGLCEEACPVDAI 117


>gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
 gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
          Length = 306

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           CI C    CV VCP+      EN +  I  ++C  CGVC   CP  A+K
Sbjct: 58  CIHC--HTCVNVCPLRAITFDENEVQHIDREKCDVCGVCAEFCPTSALK 104



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 9/51 (17%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          CP+ C               + +   +CI C  C   CP+ AI  D     
Sbjct: 32 CPLRCWWCHNPEGISPRPQLMYL-EYKCIHCHTCVNVCPLRAITFDENEVQ 81


>gi|13471398|ref|NP_102964.1| NADH dehydrogenase subunit I [Mesorhizobium loti MAFF303099]
 gi|75543506|sp|Q98KR4|NUOI_RHILO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|14022140|dbj|BAB48750.1| NADH-ubiquinone dehydrogenase chain 9 [Mesorhizobium loti
           MAFF303099]
          Length = 164

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 119

Query: 56  ------KPDTEPGLELWLKINSEYA 74
                 +  TE   EL+   +   A
Sbjct: 120 VEGPNFEFATETREELYYDKDKLLA 144


>gi|88797367|ref|ZP_01112957.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Reinekea sp. MED297]
 gi|88780236|gb|EAR11421.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Reinekea sp. MED297]
          Length = 547

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 8/72 (11%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C  C        C   CP              I  D C  CG C  +CP  AI
Sbjct: 474 AHFEASRCYSCGTCFECDGCFGACPEQAITILGTGLGYRIDYDRCTGCGACVLQCPTHAI 533

Query: 56  --KPDTEPGLEL 65
              P TE   E 
Sbjct: 534 SLFPVTELEQED 545


>gi|191166000|ref|ZP_03027836.1| 4Fe-4S binding protein [Escherichia coli B7A]
 gi|256019317|ref|ZP_05433182.1| putative oxidoreductase [Shigella sp. D9]
 gi|309793956|ref|ZP_07688381.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|190903948|gb|EDV63661.1| 4Fe-4S binding protein [Escherichia coli B7A]
 gi|308122363|gb|EFO59625.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
          Length = 162

 Score = 50.5 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMISIQSLPGD 109


>gi|320169962|gb|EFW46861.1| ATP-binding cassette sub-family E member 1 [Capsaspora owczarzaki
          ATCC 30864]
          Length = 602

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 11 LCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CK   C + C   C               +    I  + CI CG+C  +CP +AI
Sbjct: 17 KCKPKKCRQECKKSCPVVRMGKLCIEVAPTDKISYISEELCIGCGICVKKCPFEAI 72


>gi|304314561|ref|YP_003849708.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588020|gb|ADL58395.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter
           marburgensis str. Marburg]
          Length = 407

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  C     +     +      I  D+C+ CG C   CP +AIK 
Sbjct: 53  CRGCG--ACVSACRTGAIHLTSSGKTGVHSEIDEDKCVRCGYCARACPTEAIKY 104



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +V+ + C       CV  CPVD        + +  D CI CG C+  CPV A+K + E  
Sbjct: 351 HVICQRC-----GVCVNHCPVDAMAMDGE-VEVDDDTCILCGECQDICPVTAVKLNLEDD 404



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ E CI C    CV  CPV              D C+ CG C   CPVDA++
Sbjct: 269 VLEERCIGCGL--CVTECPVGVIEPVTPAPVEIKDGCVFCGRCRGVCPVDAVE 319



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 10/76 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + C  C    C E CP D             EN   I+P  C  CG C   C   AI 
Sbjct: 12 IDDRCFGC--VLCREACPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIH 69

Query: 57 PDTEPGLELWLKINSE 72
            +     +  +I+ +
Sbjct: 70 LTSSGKTGVHSEIDED 85



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2   TYVVTE-NCILCKHTDCVEVCP-VDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             VV + +CI C    C  VCP       G       I P  C  C  C   CP  AIK 
Sbjct: 117 AVVVNQRDCIGC--MTCTRVCPSRGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAIKY 174

Query: 58  DTEP-GLELWLKIN 70
            +     E + K+N
Sbjct: 175 SSRKRAYENFSKLN 188



 Score = 40.1 bits (93), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPV-DAIK 56
           + C+ C +  C   CP +    GE           + ++  +CI C  C   CP   AIK
Sbjct: 85  DKCVRCGY--CARACPTEAIKYGEILPRSVVGGKAVVVNQRDCIGCMTCTRVCPSRGAIK 142



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI CG+C  ECPV  I+P T   +E
Sbjct: 272 ERCIGCGLCVTECPVGVIEPVTPAPVE 298



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 24/80 (30%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL----------------------AIHPDECID 42
           + + C+ C    C  VCPVD     E                          +    C  
Sbjct: 299 IKDGCVFCG--RCRGVCPVDAVEITEEGFRASDGRIYLERRILRGPRSGSVEVDHVICQR 356

Query: 43  CGVCEPECPVDAIKPDTEPG 62
           CGVC   CPVDA+  D E  
Sbjct: 357 CGVCVNHCPVDAMAMDGEVE 376


>gi|295106701|emb|CBL04244.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 202

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           +T +C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 56  ITVSCQHCENPACAKVCPVGATYKDPETGVVRQDYDKCIGCRMCMSACPYT 106


>gi|262037146|ref|ZP_06010638.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
 gi|261748834|gb|EEY36181.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
          Length = 441

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPV--------DCFYEGE-NFLA-IHPDECIDCGVCEPECP 51
           NCI C +  CV+ CP+        + + +G+   L  ++ D CI+CG CE  CP
Sbjct: 364 NCISCGY--CVDACPMGLMPMKFEEMYRKGKYKKLVKLNLDMCIECGACEYSCP 415



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 35  IHPDECIDCGVCEPECPVD 53
           I  + CI CG C   CP+ 
Sbjct: 360 IERNNCISCGYCVDACPMG 378


>gi|154419790|ref|XP_001582911.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121917149|gb|EAY21925.1| hypothetical protein TVAG_249850 [Trichomonas vaginalis G3]
          Length = 599

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCI--LCKHTDCVEVCPVD-----CFYEGENFLAIHPDECIDCGVCEPECPVD 53
          +  V  + C    C+  +C  VCPV+     C        AI    CI CG+C  +CP  
Sbjct: 8  LAVVNADRCKPKKCQ-KECKGVCPVNRSGKNCIKVPVTGCAISEALCIGCGMCVKKCPFH 66

Query: 54 AIK 56
          AI+
Sbjct: 67 AIQ 69


>gi|83718953|ref|YP_441525.1| ferredoxin [Burkholderia thailandensis E264]
 gi|257139787|ref|ZP_05588049.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83652778|gb|ABC36841.1| iron-sulfur cluster-binding protein [Burkholderia thailandensis
           E264]
          Length = 282

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 85  QLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 82  IDEQLCIGCTLCMQACPVDAI 102


>gi|73666986|ref|YP_303002.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake]
 gi|115502528|sp|Q3YSA1|NUOI_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|72394127|gb|AAZ68404.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake]
          Length = 167

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAICPAQAITIEAQERDDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 122



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 107 CIYCGF--CQEACPVDAIVEGPNFEY 130



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 66 ERCIACKLCEAICPAQAITIEAQERDD 92


>gi|70733154|ref|YP_262927.1| ferredoxin, 4Fe-4S [Pseudomonas fluorescens Pf-5]
 gi|68347453|gb|AAY95059.1| ferredoxin, 4Fe-4S [Pseudomonas fluorescens Pf-5]
          Length = 83

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNAAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTK 83
          I     P  E   +   E   ++  IT K
Sbjct: 59 I-----PLDEARPETEEELMAKYRKITGK 82


>gi|11498235|ref|NP_069461.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649992|gb|AAB90612.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 340

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + YV  + CI C    C E CP +     E+   +  ++C  CGVC   C  +AIK
Sbjct: 276 LAYVDEDMCIACGV--CEERCPFEAITL-EDVAKVDEEKCFGCGVCVVGCEQEAIK 328



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 22  PVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
           P++   E   +L  +  D CI CGVCE  CP +AI  + 
Sbjct: 265 PIESLLEKSRYLAYVDEDMCIACGVCEERCPFEAITLED 303


>gi|13541408|ref|NP_111096.1| indolepyruvate:ferredoxin oxidoreductase, alpha and beta subunits
           [Thermoplasma volcanium GSS1]
 gi|14324791|dbj|BAB59718.1| indolpyruvate ferredoxin oxidoreductase [IOR] alpha subunit
           [Thermoplasma volcanium GSS1]
          Length = 604

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C        CP        N  A   D CI CG C   CP +AIK       + W
Sbjct: 542 EKCTGCSICYDFFTCP--SILPLSNKKAFIDDSCIGCGACVEVCPFNAIKVKGNAP-KGW 598

Query: 67  LK 68
           ++
Sbjct: 599 IE 600



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY 27
            + ++CI C    CVEVCP +   
Sbjct: 568 FIDDSCIGCG--ACVEVCPFNAIK 589


>gi|328783520|ref|XP_003250306.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial isoform 1 [Apis mellifera]
          Length = 175

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 74  ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 130



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 74  ERCIACKLCEAICPAQAITIEAEERAD 100



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 115 CIYCGF--CQEACPVDAIVEGPNF 136


>gi|212223426|ref|YP_002306662.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
 gi|212008383|gb|ACJ15765.1| Oxidoreductase iron-sulfur protein [Thermococcus onnurineus NA1]
          Length = 165

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
          V  NC  C+   C+EVCPV+   + ++  + + P +CI C +C   CP    K D 
Sbjct: 42 VAFNCRHCEKAPCMEVCPVNALSKDDDGAVVLDPLKCIGCLMCGLACPFGIPKIDE 97


>gi|87306374|ref|ZP_01088521.1| NADH dehydrogenase subunit I [Blastopirellula marina DSM 3645]
 gi|87290553|gb|EAQ82440.1| NADH dehydrogenase subunit I [Blastopirellula marina DSM 3645]
          Length = 175

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-----------IHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + CPVDC Y G+  +            I   +C+ C +C   CPVD I  
Sbjct: 65  CIACDQ--CAKACPVDCIYIGKERVEGAKGFAVTGFTIDYTKCMFCALCVEPCPVDCIFM 122

Query: 58  DTEPGLELWLKINS 71
                L  + +  +
Sbjct: 123 GGTLDLSSYSRDGA 136


>gi|89109665|ref|AP_003445.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111508|ref|NP_417362.4| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157154983|ref|YP_001464223.1| 4Fe-4S binding protein [Escherichia coli E24377A]
 gi|170018868|ref|YP_001723822.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|170680835|ref|YP_001745038.1| 4Fe-4S binding protein [Escherichia coli SMS-3-5]
 gi|193063562|ref|ZP_03044651.1| 4Fe-4S binding protein [Escherichia coli E22]
 gi|194426426|ref|ZP_03058981.1| 4Fe-4S binding protein [Escherichia coli B171]
 gi|218555434|ref|YP_002388347.1| putative oxidoreductase [Escherichia coli IAI1]
 gi|218696481|ref|YP_002404148.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli 55989]
 gi|238902011|ref|YP_002927807.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BW2952]
 gi|256024605|ref|ZP_05438470.1| putative oxidoreductase [Escherichia sp. 4_1_40B]
 gi|260845553|ref|YP_003223331.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|260857008|ref|YP_003230899.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|260869562|ref|YP_003235964.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O111:H- str. 11128]
 gi|293449208|ref|ZP_06663629.1| oxidoreductase [Escherichia coli B088]
 gi|300815664|ref|ZP_07095888.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300820688|ref|ZP_07100839.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300906566|ref|ZP_07124257.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300947605|ref|ZP_07161777.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300954276|ref|ZP_07166739.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301027818|ref|ZP_07191123.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301303042|ref|ZP_07209169.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|301327285|ref|ZP_07220541.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|301643766|ref|ZP_07243804.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307139572|ref|ZP_07498928.1| putative oxidoreductase [Escherichia coli H736]
 gi|307310496|ref|ZP_07590144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331669619|ref|ZP_08370465.1| putative electron transport protein YgfS [Escherichia coli TA271]
 gi|331684510|ref|ZP_08385102.1| putative electron transport protein YgfS [Escherichia coli H299]
 gi|6920085|sp|Q46819|YGFS_ECOLI RecName: Full=Putative electron transport protein ygfS
 gi|85675698|dbj|BAE76951.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K12 substr. W3110]
 gi|87082179|gb|AAC75924.2| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157077013|gb|ABV16721.1| 4Fe-4S binding protein [Escherichia coli E24377A]
 gi|169753796|gb|ACA76495.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|170518553|gb|ACB16731.1| 4Fe-4S binding protein [Escherichia coli SMS-3-5]
 gi|192930839|gb|EDV83444.1| 4Fe-4S binding protein [Escherichia coli E22]
 gi|194415734|gb|EDX32001.1| 4Fe-4S binding protein [Escherichia coli B171]
 gi|218353213|emb|CAU99126.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli 55989]
 gi|218362202|emb|CAQ99820.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli IAI1]
 gi|238862761|gb|ACR64759.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BW2952]
 gi|257755657|dbj|BAI27159.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O26:H11 str. 11368]
 gi|257760700|dbj|BAI32197.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O103:H2 str. 12009]
 gi|257765918|dbj|BAI37413.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O111:H- str. 11128]
 gi|291322298|gb|EFE61727.1| oxidoreductase [Escherichia coli B088]
 gi|299879080|gb|EFI87291.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300318737|gb|EFJ68521.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300401605|gb|EFJ85143.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300452802|gb|EFK16422.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300526952|gb|EFK48021.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300531593|gb|EFK52655.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300841706|gb|EFK69466.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|300846148|gb|EFK73908.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|301077865|gb|EFK92671.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|306909391|gb|EFN39886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309703246|emb|CBJ02581.1| putative oxidoreductase, 4Fe-4S subunit [Escherichia coli ETEC
           H10407]
 gi|315062189|gb|ADT76516.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli W]
 gi|315256767|gb|EFU36735.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|315614960|gb|EFU95598.1| hydrogenase-4 component A [Escherichia coli 3431]
 gi|320202544|gb|EFW77114.1| putative oxidoreductase, Fe-S subunit [Escherichia coli EC4100B]
 gi|323154765|gb|EFZ40963.1| hydrogenase-4 component A [Escherichia coli EPECa14]
 gi|323162525|gb|EFZ48375.1| hydrogenase-4 component A [Escherichia coli E128010]
 gi|323167911|gb|EFZ53601.1| hydrogenase-4 component A [Shigella sonnei 53G]
 gi|323173882|gb|EFZ59511.1| hydrogenase-4 component A [Escherichia coli LT-68]
 gi|323180328|gb|EFZ65880.1| hydrogenase-4 component A [Escherichia coli 1180]
 gi|323183438|gb|EFZ68835.1| hydrogenase-4 component A [Escherichia coli 1357]
 gi|323377227|gb|ADX49495.1| putative oxidoreductase, Fe-S subunit [Escherichia coli KO11]
 gi|323935883|gb|EGB32182.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941594|gb|EGB37774.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323946629|gb|EGB42652.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324119926|gb|EGC13805.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|331063287|gb|EGI35200.1| putative electron transport protein YgfS [Escherichia coli TA271]
 gi|331078125|gb|EGI49331.1| putative electron transport protein YgfS [Escherichia coli H299]
          Length = 162

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|323478558|gb|ADX83796.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 285

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 147


>gi|306816073|ref|ZP_07450211.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli NC101]
 gi|305850469|gb|EFM50926.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli NC101]
          Length = 155

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|220924013|ref|YP_002499315.1| NADH dehydrogenase subunit I [Methylobacterium nodulans ORS 2060]
 gi|254772594|sp|B8IUV4|NUOI_METNO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|219948620|gb|ACL59012.1| NADH-quinone oxidoreductase, chain I [Methylobacterium nodulans ORS
           2060]
          Length = 162

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAI 117



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 60 ERCIACKLCEAICPAQAITIEAGP 83



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCG--MCQEACPVDAIVEGPNF 123


>gi|157963137|ref|YP_001503171.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           pealeana ATCC 700345]
 gi|157848137|gb|ABV88636.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           pealeana ATCC 700345]
          Length = 488

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +  +C+ C    CVEVCP                ECIDCG C   C
Sbjct: 284 ILGDCVDCNL--CVEVCPTGIDIRNGLQY-----ECIDCGACVDAC 322


>gi|126090183|ref|YP_001041664.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|126174476|ref|YP_001050625.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|125997681|gb|ABN61756.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS155]
 gi|125999839|gb|ABN63909.1| hypothetical protein Sbal_4546 [Shewanella baltica OS155]
          Length = 199

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +   +C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCI 159


>gi|325661153|ref|ZP_08149780.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472660|gb|EGC75871.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 263

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V +  CI C    C +VCP D      N   I P++C +CG C  +CP
Sbjct: 213 VCSTGCIGC--RMCQKVCPADAIVVENNLAWIDPEKCTNCGACAEKCP 258



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C    CV+ CP D  +  +    +  + C  CG C   CP + I+
Sbjct: 145 CGFGTCVKACPFDAIHIVDGVAVVDKEACKACGKCIKACPKNLIE 189



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGV 45
             V  E C  C    C++ CP +                   +G++ +A+    CI C +
Sbjct: 166 AVVDKEACKACG--KCIKACPKNLIELVPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRM 223

Query: 46  CEPECPVDAIKPDTEPGL 63
           C+  CP DAI  +     
Sbjct: 224 CQKVCPADAIVVENNLAW 241


>gi|325981158|ref|YP_004293560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nitrosomonas sp. AL212]
 gi|325530677|gb|ADZ25398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Nitrosomonas sp. AL212]
          Length = 86

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +GE    I P  C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISQGEEIYQIDPSLCTECVGHYNEPQCIEVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNGAISQGEE 29


>gi|257792114|ref|YP_003182720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476011|gb|ACV56331.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 207

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           M Y +T  C  C++  C +VCPV   Y+      +    D+CI C +C   CP  
Sbjct: 58  MRY-ITVGCQHCENPTCTKVCPVGATYKDPETGVVRQDYDKCIGCRMCMAACPYT 111


>gi|255593643|ref|XP_002535919.1| Ferredoxin, putative [Ricinus communis]
 gi|223521533|gb|EEF26466.1| Ferredoxin, putative [Ricinus communis]
          Length = 83

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    C  VCP +   +G     I+PD C +C        C+  CP+  
Sbjct: 1  MALFITDECINCDV--CEPVCPNEAISQGAEIYEINPDLCTECVGHYDKPQCQQVCPISC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPLDPD 64


>gi|158340815|ref|YP_001521983.1| nitroreductase family protein, putative [Acaryochloris marina
          MBIC11017]
 gi|158311056|gb|ABW32669.1| nitroreductase family protein, putative [Acaryochloris marina
          MBIC11017]
          Length = 290

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 21/81 (25%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI----HPDECIDCGVCEPECPVDA------- 54
           E C  C    CV++CP    +      AI        CI+CG C   CP +A       
Sbjct: 8  AERCQKCG--KCVQICPT--IFAQHTKGAIPHLLDTTRCIECGHCVAICPSEAISHSSFP 63

Query: 55 ------IKPDTEPGLELWLKI 69
                I+P+  P    ++++
Sbjct: 64 SGTIAPIQPEQLPDTAQFMEL 84


>gi|54024629|ref|YP_118871.1| NADH dehydrogenase subunit H [Nocardia farcinica IFM 10152]
 gi|81680061|sp|Q5YWD4|NUOHI_NOCFA RecName: Full=NADH-quinone oxidoreductase subunits H/I; AltName:
           Full=NADH dehydrogenase I subunits H/I; AltName:
           Full=NDH-1 subunit H/I
 gi|54016137|dbj|BAD57507.1| putative NADH dehydrogenase I chain H [Nocardia farcinica IFM
           10152]
          Length = 597

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 25/111 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGEN---------------FLAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP D  Y EG +                  I+   CI CG+C   C
Sbjct: 463 EKCIGCEL--CAWACPADAIYVEGADNTEDERYSPGERYGRVYQINYLRCIGCGLCIEAC 520

Query: 51  PVDAIKP--DTEPGLELWLKI----NSEYATQWPNITTKKESL-PSAAKMD 94
           P  A+    D E   +    +    +   A   P +     ++ P   + D
Sbjct: 521 PTRALTMTNDYELTDDNRADLIYEKDRLLAPLAPGMVAPPPAMAPGTTEAD 571



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 22  PVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPD--TEPGLELW 66
           P    Y G + L  HPD   +CI C +C   CP DAI  +       E +
Sbjct: 444 PTAPRYHGRHQLNRHPDGLEKCIGCELCAWACPADAIYVEGADNTEDERY 493


>gi|114566722|ref|YP_753876.1| thiamine pyrophosphate enzyme [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337657|gb|ABI68505.1| thiamine pyrophosphate enzyme [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 580

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV  E C  CK   C+++ C    + E +    I+P+ C+ CG+C   C  DAIK
Sbjct: 524 YVDPELCKSCKL--CIKIGCTGIYWVEEDRKAVINPNTCVACGLCPQVCTFDAIK 576


>gi|331083627|ref|ZP_08332738.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403838|gb|EGG83390.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 860

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  CK     + CP++     +  + I  + C  CG C  +CP +A   D   G  ++
Sbjct: 715 EKCRGCKICRVEKNCPINVAKVVDGKIVIDENSCNHCGRCIGKCPFNA-FEDYTNGYRIY 773

Query: 67  L 67
           +
Sbjct: 774 I 774


>gi|224371395|ref|YP_002605559.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium
           autotrophicum HRM2]
 gi|223694112|gb|ACN17395.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium
           autotrophicum HRM2]
          Length = 273

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI CK   C EVCP+    + ++   I    CI C  C  +CPV A   D E  L    
Sbjct: 201 DCIDCKL--CSEVCPMGSI-DSDDVSKIT-GICIKCCACVKKCPVGAKYFDDENYLRHKH 256

Query: 68  KI 69
           ++
Sbjct: 257 EL 258


>gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C    C   CPV+    E +   +I+ + CI CG C   C   A+  D
Sbjct: 532 EKCIGCGL--CRRNCPVEAISGETKKVHSINQELCIQCGKCYEVCKFGAVIVD 582



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I  ++CI CG+C   CPV+AI  +T+
Sbjct: 529 ILDEKCIGCGLCRRNCPVEAISGETK 554


>gi|317489347|ref|ZP_07947861.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
 gi|316911592|gb|EFV33187.1| dimethylsulfoxide reductase [Eggerthella sp. 1_3_56FAA]
          Length = 190

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C  C + +CV VCP    Y+ ++ +  +   +CI C  C   CP      DT  
Sbjct: 53  YYLPVSCQHCDNPECVSVCPTGASYKRDDGVVLVDHSKCIGCQYCVMACPYGVRAYDTSK 112

Query: 62  G 62
            
Sbjct: 113 D 113


>gi|302872534|ref|YP_003841170.1| hypothetical protein COB47_1916 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575393|gb|ADL43184.1| protein of unknown function DUF362 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 375

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNACPAQAIEMRSRKAYVDLKKCIKCYCCHELCPAKAIK 363



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
               + CI C  C   CP  AI+
Sbjct: 312 VFDRNICIGCAECFNACPAQAIE 334


>gi|288942194|ref|YP_003444434.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288897566|gb|ADC63402.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Allochromatium vinosum DSM 180]
          Length = 240

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +C+ C+   CV VCP    Y+  +   + +  D+CI C  C   CP  A + D + 
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRPDNGVVLVDYDKCIGCKYCSWACPYGARELDAQQ 127


>gi|239502912|ref|ZP_04662222.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          AB900]
 gi|260554429|ref|ZP_05826650.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|260410971|gb|EEX04268.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
          Length = 87

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCD--MCLPECPNTAIFEGSKVYEIDPLRCTECVGFYAAPTCKEVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKQD 62


>gi|226327874|ref|ZP_03803392.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198]
 gi|225203578|gb|EEG85932.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198]
          Length = 180

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  A++
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|298530405|ref|ZP_07017807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509779|gb|EFI33683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 280

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C+ C    C   CP    Y+ E  L     ++C+ CG C   CP  
Sbjct: 89  SCMQCIRPSCARACPTGATYKDEFGLVSFDSEKCMACGYCVDACPFQ 135



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-------IHPDECIDCGVCEPECPVDAIKP 57
           +E C+ C +  CV+ CP     E   F         I+   C  CG C   CP +A+  
Sbjct: 119 SEKCMACGY--CVDACPFQHP-ELSRFTYFSLRNVWIN--RCTACGACAQACPENALFF 172


>gi|206901578|ref|YP_002250818.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740681|gb|ACI19739.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 266

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
              DCV+VCP D  Y GE+ L  I  ++C  CG+C   CP
Sbjct: 144 GFGDCVKVCPFDAIYMGEDGLPKIDIEKCTGCGLCVKACP 183



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V ++ CI C    C +VCP         F  I  + C  CG+C  +CP  A
Sbjct: 212 VCSKACIGCG--ICEKVCPKGAIKMDGRFPVIDYNLCDGCGICVEKCPTKA 260



 Score = 40.5 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 18/68 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCEPEC 50
           E C  C    CV+ CP                      G     +    CI CG+CE  C
Sbjct: 170 EKCTGCGL--CVKACPRGILTLLPINIPLLLGCRSELPGPEARKVCSKACIGCGICEKVC 227

Query: 51  PVDAIKPD 58
           P  AIK D
Sbjct: 228 PKGAIKMD 235


>gi|330813990|ref|YP_004358229.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487085|gb|AEA81490.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 161

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAISIDAELKEDGSRKTTRYDIDMVKCIYCGLCQEACPVDAI 116



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D E   +
Sbjct: 60 ERCIACKLCEAVCPAQAISIDAELKED 86


>gi|284161887|ref|YP_003400510.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           profundus DSM 5631]
 gi|284011884|gb|ADB57837.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 734

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 3   YVVT--ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +T  E C  C    C  VCP +   E +    I P  C  CG+C   CP  AIK    
Sbjct: 534 YSITDIEKCSKCGL--CYAVCPHNAI-EFDEVFKIDPAFCKGCGLCYATCPSRAIKLVNL 590

Query: 61  PGLE 64
              +
Sbjct: 591 EDEQ 594



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 19/77 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL----AIHPD-------------ECIDCGV 45
           Y+  + C+ C    C EVCP++     +  +    AI  D              C  CG 
Sbjct: 229 YIDPDKCVSCG--KCSEVCPIEVPNPFDFGMTKRKAIDKDFRLAMPDTYNIVEGCNRCGE 286

Query: 46  CEPECPVDAIKPDTEPG 62
           C   CP +AI  D +  
Sbjct: 287 CVKVCPTNAINLDAKAE 303


>gi|283785157|ref|YP_003365022.1| electron transport complex protein [Citrobacter rodentium ICC168]
 gi|282948611|emb|CBG88202.1| electron transport complex protein [Citrobacter rodentium ICC168]
          Length = 192

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--- 55
           M  V+ E NCI C  T C++ CPVD        +  +  D C  C +C   CP   I   
Sbjct: 108 MLAVIDEANCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCITLR 165

Query: 56  -KPDTEPGLEL 65
              DT    + 
Sbjct: 166 PVADTPDTWKW 176


>gi|228470502|ref|ZP_04055369.1| ferredoxin [Porphyromonas uenonis 60-3]
 gi|228307798|gb|EEK16754.1| ferredoxin [Porphyromonas uenonis 60-3]
          Length = 319

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
              CI C  + C +VCP +      N   I   +C  C  C  ECP  AI     P 
Sbjct: 217 ANACIGC--SKCFKVCPFEAITFENNLAYIDHQKCRLCRKCAAECPTGAIHEVNLPP 271



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 13  KHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
            + DCV VC  D  +         +  D+C  CG C   CP
Sbjct: 143 GNGDCVAVCDFDAIHMNPETGLPEVDEDKCTACGACVKACP 183


>gi|224373020|ref|YP_002607392.1| indolepyruvate oxidoreductase subunit IorA [Nautilia profundicola
           AmH]
 gi|223589889|gb|ACM93625.1| indolepyruvate oxidoreductase subunit IorA [Nautilia profundicola
           AmH]
          Length = 600

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP-ECPVDAIKP 57
             V  E C+ C       VCP   + E    + I P  CI CGVC    CP DA  P
Sbjct: 542 ATVDEEKCVACDVCTTQYVCPPMAYNERG-KIEIDPLLCIGCGVCISGICPTDAFIP 597


>gi|170728773|ref|YP_001762799.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814120|gb|ACA88704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 240

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 110 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKETDVAD 169

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 170 NCDFCLNSKLA 180


>gi|23450982|gb|AAN32622.1|AF373594_2 putative benzoyl-CoA oxygenase [Thauera aromatica]
          Length = 416

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E+CP++          +  D C  C  C   CP  AI
Sbjct: 19 EVCIRCN--TCEEMCPINAITHDARNYVVKFDVCKGCLACISPCPTGAI 65



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CP++AI  D  
Sbjct: 16 IDPEVCIRCNTCEEMCPINAITHDAR 41


>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
 gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
          Length = 640

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y+  + C  C    C   CP D    G+  +  I   +CI CG C   CP 
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQGKCIKCGACVDTCPA 611



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I PD+C  C +C   CP DAIK
Sbjct: 562 FYIDPDKCKACMICARNCPTDAIK 585


>gi|332085057|gb|EGI90237.1| iron-sulfur protein [Shigella boydii 5216-82]
          Length = 157

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|297568110|ref|YP_003689454.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924025|gb|ADH84835.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 7/48 (14%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
           C  C    C   C           EGE    + PD CI CG C   CP
Sbjct: 625 CRDC--HICENTCHYGAISRRDLGEGEFEYVVDPDRCIGCGFCAGTCP 670


>gi|256811300|ref|YP_003128669.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus fervens
           AG86]
 gi|256794500|gb|ACV25169.1| Cobyrinic acid ac-diamide synthase [Methanocaldococcus fervens
           AG86]
          Length = 269

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           Y +  NCI C    C+E+C  D   +      I+P  C  CG CE  C  +A++P
Sbjct: 63  YKINNNCIKCG--KCLEICQFDAIED----FKINPILCEGCGACELICEFNAVEP 111


>gi|256827734|ref|YP_003151693.1| 4Fe-4S protein [Cryptobacterium curtum DSM 15641]
 gi|256583877|gb|ACU95011.1| 4Fe-4S protein [Cryptobacterium curtum DSM 15641]
          Length = 384

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 17 CVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          CV +CP+D      +N L I  + C+ CG C   CP +A+ P   P 
Sbjct: 39 CVAICPIDETITIEKNNLLIDFERCVSCGACTTACPTNALAPLDPPD 85


>gi|239617465|ref|YP_002940787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506296|gb|ACR79783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
          Length = 354

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           NC+ C    C   CPV      E    I  D CI CG C   C   A+ P  +   EL  
Sbjct: 193 NCVACG--MCERHCPVGAITI-EGVARIDYDICIGCGQCIAMCNYGAMVPKWDSSTELLS 249

Query: 68  KINSEYAT 75
           K   EYA 
Sbjct: 250 KKMVEYAK 257


>gi|167629547|ref|YP_001680046.1| 4fe-4S ferredoxin, pshb protein [Heliobacterium modesticaldum
          Ice1]
 gi|119675287|gb|ABL89193.1| PshB [Heliobacterium modesticaldum]
 gi|167592287|gb|ABZ84035.1| 4fe-4S ferredoxin, pshb protein [Heliobacterium modesticaldum
          Ice1]
          Length = 54

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M Y +T+ C  C    C++ C V    EG    +I  D C+DCGVC  +CPVDAI P
Sbjct: 1  MAYKITDACTACG--ACMDGCCVGAIVEG-KKYSITSD-CVDCGVCADKCPVDAIIP 53


>gi|300855217|ref|YP_003780201.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300435332|gb|ADK15099.1| predicted transcriptional regulator containing a ferredoxin
          domain [Clostridium ljungdahlii DSM 13528]
          Length = 638

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 4  VVTENCILCKHTDCVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V+ E C  C    C+  CP     V     G + + I  + CI CG C   C   A
Sbjct: 8  VLKEKCTGCN--KCIRTCPILGANVTATENGVSKVYIDEERCIGCGECVKVCEHGA 61


>gi|268597677|ref|ZP_06131844.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19]
 gi|268599929|ref|ZP_06134096.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11]
 gi|268602263|ref|ZP_06136430.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18]
 gi|268604529|ref|ZP_06138696.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1]
 gi|268682984|ref|ZP_06149846.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           PID332]
 gi|268687412|ref|ZP_06154274.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291042886|ref|ZP_06568627.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2]
 gi|293398104|ref|ZP_06642309.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62]
 gi|304389075|ref|ZP_07371119.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC
           13091]
 gi|268551465|gb|EEZ46484.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19]
 gi|268584060|gb|EEZ48736.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11]
 gi|268586394|gb|EEZ51070.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18]
 gi|268588660|gb|EEZ53336.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1]
 gi|268623268|gb|EEZ55668.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           PID332]
 gi|268627696|gb|EEZ60096.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291013320|gb|EFE05286.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2]
 gi|291611367|gb|EFF40437.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62]
 gi|304336948|gb|EFM03138.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC
           13091]
          Length = 164

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 63  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 119



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 63 ERCIACKLCEAVCPAMAINIESEERED 89


>gi|218193826|gb|EEC76253.1| hypothetical protein OsI_13702 [Oryza sativa Indica Group]
          Length = 261

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 160 ERCIACKL--CEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 216



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 13/69 (18%)

Query: 7   ENCILCKHTDCVEVC--------PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAI 55
           E CI CK   C  V         P+   + GE+ L  +P   + CI C +CE  CP  AI
Sbjct: 120 ERCIACKL--CEAVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAI 177

Query: 56  KPDTEPGLE 64
             + E   +
Sbjct: 178 TIEAEERED 186



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 201 CIYCGF--CQEACPVDAIVEGPNF 222


>gi|219123199|ref|XP_002181917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406518|gb|EEC46457.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 163

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP         E E+         I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAACPAQAITIEVQEREDGARRTTRYDIDMTKCIYCGFCQEACPVDAI 118



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 62 ERCIACKLCEAACPAQAITIEVQERED 88



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|213021596|ref|ZP_03336043.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
          subsp. enterica serovar Typhi str. 404ty]
          Length = 180

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 11 CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 55


>gi|153001066|ref|YP_001366747.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151365684|gb|ABS08684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 181

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDT 59
            C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP DA  I+ D 
Sbjct: 60  ACMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYDAVSIREDD 114


>gi|146311476|ref|YP_001176550.1| electron transport complex protein RnfB [Enterobacter sp. 638]
 gi|145318352|gb|ABP60499.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           sp. 638]
          Length = 192

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V+ E NCI C  T C++ CPVD        +  +  D C  C +C   CP   I
Sbjct: 111 VIDEANCIGC--TKCIQACPVDAIVGATRAMHTVIADLCTGCNLCVAPCPTQCI 162



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 18  VEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAI 55
           V+  PVD     +        I    CI C  C   CPVDAI
Sbjct: 91  VDPQPVDGDESAQEPARLLAVIDEANCIGCTKCIQACPVDAI 132


>gi|83644719|ref|YP_433154.1| electron transport complex protein RnfB [Hahella chejuensis KCTC
           2396]
 gi|123767479|sp|Q2SKU5|RNFB_HAHCH RecName: Full=Electron transport complex protein rnfB
 gi|83632762|gb|ABC28729.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Hahella
           chejuensis KCTC 2396]
          Length = 197

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 108 AYIREDECIGC--TKCIQACPVDAILGAAKQMHTVIVSECTGCDLCVEPCPVDCI 160



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
           G+    I  DECI C  C   CPVDAI
Sbjct: 104 GKQVAYIREDECIGCTKCIQACPVDAI 130


>gi|34556567|ref|NP_906382.1| hypothetical protein WS0117 [Wolinella succinogenes DSM 1740]
 gi|400894|sp|P31076|PSRB_WOLSU RecName: Full=Polysulfide reductase chain B; AltName: Full=Sulfur
           reductase chain B
 gi|48527|emb|CAA46177.1| psrB [Wolinella succinogenes]
 gi|34482281|emb|CAE09282.1| NRFC [Wolinella succinogenes]
          Length = 191

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           ++C+ C++T CV VCP    Y  E+ +  ++ D C+ C  C   CP  A   D
Sbjct: 59  QSCVQCENTPCVSVCPTKASYVNEDGIVSVNVDLCVGCLYCIAACPYQARYVD 111


>gi|89093172|ref|ZP_01166122.1| probable ferredoxin [Oceanospirillum sp. MED92]
 gi|89082468|gb|EAR61690.1| probable ferredoxin [Oceanospirillum sp. MED92]
          Length = 474

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCPV               EC+ CG C   C
Sbjct: 270 DCIDCN--ACVHVCPVGIDIRDGLQY-----ECVACGACVDAC 305



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF---YEGENFLAIHPDE----------------------CIDCGVCEPECP 51
           C+ +CP   F      ++ L I  DE                      CIDC  C   CP
Sbjct: 223 CIYMCPYARFQSVMFDQDTLIISYDEKRGENRGKRKKGSDYKAKGLGDCIDCNACVHVCP 282

Query: 52  VD 53
           V 
Sbjct: 283 VG 284


>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 640

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y+  + C  C    C   CP D    G+  +  I   +CI CG C   CP 
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQGKCIKCGACVDTCPA 611



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I PD+C  C +C   CP DAIK
Sbjct: 562 FYIDPDKCKACMICARNCPTDAIK 585


>gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 598

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C + CP +    + +    I  ++CI CGVC  +CP  AI
Sbjct: 547 DLCKGCG--ICAKNCPANAITGQIKKPFEIDQEKCIKCGVCIEKCPFKAI 594



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|332560639|ref|ZP_08414957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides WS8N]
 gi|332274437|gb|EGJ19753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides WS8N]
          Length = 469

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 18/98 (18%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +CI C    CV VCP+     EG+         CI CG+C   C     +     GL  +
Sbjct: 250 DCIDC--MACVNVCPMGIDIREGQQM------ACITCGLCIDACDDTMDRIGRPRGLIGY 301

Query: 67  LKINSEY--------ATQWPNITTKKESLPSAAKMDGV 96
           L ++ E+        A  W  +   + SL  AA   GV
Sbjct: 302 LALSDEHLERAGDAPAPAWKRLFRLRTSLY-AALWAGV 338


>gi|309379794|emb|CBX21570.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 162

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 61  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 117



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAINIESEERED 87


>gi|296242044|ref|YP_003649531.1| dihydroorotate dehydrogenase family protein [Thermosphaera
           aggregans DSM 11486]
 gi|296094628|gb|ADG90579.1| dihydroorotate dehydrogenase family protein [Thermosphaera
           aggregans DSM 11486]
          Length = 403

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C    C +VC  D  +      G+    +   +C  CG+C   CP  AI  + 
Sbjct: 350 CIGCGF--CQQVCDYDAVHVEESGGGKRLAVVDRTKCYGCGLCTSVCPTRAIHFEE 403



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   +CI CG C+  C  DA+  +   G
Sbjct: 345 VDEKKCIGCGFCQQVCDYDAVHVEESGG 372


>gi|296133903|ref|YP_003641150.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola sp. JR]
 gi|296032481|gb|ADG83249.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola potens JR]
          Length = 597

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           VT+ C+ CK       CP            I    C  CGVC   CP DAI+ 
Sbjct: 545 VTDKCVGCKVCMNKLGCP--ALVPAGEK-VIIGATCTGCGVCRQVCPADAIEE 594


>gi|296159154|ref|ZP_06841981.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. Ch1-1]
 gi|295890715|gb|EFG70506.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. Ch1-1]
          Length = 279

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I
Sbjct: 89  CIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCI 134



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 83  VIDEQVCIGCTLCMQACPVDAI 104


>gi|284038435|ref|YP_003388365.1| cytochrome C oxidase accessory protein CcoG [Spirosoma linguale DSM
           74]
 gi|283817728|gb|ADB39566.1| cytochrome c oxidase accessory protein CcoG [Spirosoma linguale DSM
           74]
          Length = 497

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 18/67 (26%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +C+ CK   CV VCP       G         ECI+C  C   C         P+  I+ 
Sbjct: 297 DCVDCKL--CVHVCPTGIDIRNGTQM------ECINCTACMDACDDVMLKIDRPLGLIRM 348

Query: 58  DTEPGLE 64
           D++ G+E
Sbjct: 349 DSQKGIE 355


>gi|116748614|ref|YP_845301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697678|gb|ABK16866.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 990

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 9   CILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV+VCP          EG     I    C  CG C   CP  A
Sbjct: 921 CRGCG--KCVDVCPYGSPQLVEVGEGVFVSQIQEALCKGCGACAVACPTGA 969



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 26/77 (33%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECID-- 42
           YV  + CI C    C   CP    D F  G                +  AI  + C    
Sbjct: 26  YVDLDKCISCG--ACAGKCPTVVIDAFNAGLGKRKAIYKYYAQAIPSGYAIDAENCRQLG 83

Query: 43  ----CGVCEPECPVDAI 55
               CG+C   CP DA+
Sbjct: 84  HGKKCGICAKVCPADAV 100


>gi|331085092|ref|ZP_08334178.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407875|gb|EGG87365.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 263

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V +  CI C    C +VCP D      N   I P++C +CG C  +CP
Sbjct: 213 VCSTGCIGC--RMCQKVCPADAIVVENNLAWIDPEKCTNCGACAEKCP 258



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C    CV+ CP D  +  +    +  + C  CG C   CP + I+
Sbjct: 145 CGFGTCVKACPFDAIHIVDGVAVVDKEACKACGKCIKACPKNLIE 189



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGV 45
             V  E C  C    C++ CP +                   +G++ +A+    CI C +
Sbjct: 166 AVVDKEACKACG--KCIKACPKNLIELVPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRM 223

Query: 46  CEPECPVDAIKPDTEPGL 63
           C+  CP DAI  +     
Sbjct: 224 CQKVCPADAIVVENNLAW 241


>gi|330836087|ref|YP_004410728.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
 gi|329747990|gb|AEC01346.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
          Length = 297

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CI C    CVE CP     E +  + I    C  CG+C  +CP  A+  D
Sbjct: 53  ACIQCG--ICVETCPERAL-ELDGRIHIDKKHCTGCGMCIEKCPAAAMAFD 100



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 37 PDECIDCGVCEPECPVDAIKPD 58
          P  CI CG+C   CP  A++ D
Sbjct: 51 PSACIQCGICVETCPERALELD 72


>gi|304315005|ref|YP_003850152.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588464|gb|ADL58839.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 128

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E C+ C    CV +CPV      +++   I   +CI C  C   CP  AI
Sbjct: 77  EKCVDCG--ACVSLCPVSAICIEDDWEIRIDDQKCIGCSFCVNSCPTGAI 124



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
            ++C+DCG C   CPV AI  + +
Sbjct: 75 DREKCVDCGACVSLCPVSAICIEDD 99


>gi|299135024|ref|ZP_07028215.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2]
 gi|298590001|gb|EFI50205.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2]
          Length = 162

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAI 117


>gi|253582926|ref|ZP_04860144.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251835132|gb|EES63675.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 56

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + CI C    C   CPV      ++      D C+DCG C   CPV AI  +
Sbjct: 7  DACIGCG--ACEGTCPVGAIAATDDGKYGISDACVDCGACAGGCPVSAISAE 56



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             I  D CI CG CE  CPV AI    +
Sbjct: 1  MHVIDKDACIGCGACEGTCPVGAIAATDD 29


>gi|259908516|ref|YP_002648872.1| electron transport complex protein RnfB [Erwinia pyrifoliae Ep1/96]
 gi|224964138|emb|CAX55645.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96]
 gi|283478476|emb|CAY74392.1| Electron transport complex protein rnfB [Erwinia pyrifoliae DSM
           12163]
 gi|310767588|gb|ADP12538.1| electron transport complex protein RnfB [Erwinia sp. Ejp617]
          Length = 191

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 115 NCIGC--TKCIQACPVDAIVGATRAMHTVLSDICTGCDLCVAPCPTDCIE 162



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 111 IDEANCIGCTKCIQACPVDAI 131


>gi|168260584|ref|ZP_02682557.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205350180|gb|EDZ36811.1| protein AegA [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 157

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + +    CI C  C   CP  A
Sbjct: 58  CHQCEDASCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFGA 103


>gi|147678756|ref|YP_001212971.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
           thermopropionicum SI]
 gi|146274853|dbj|BAF60602.1| pyruvate-formate lyase-activating enzyme [Pelotomaculum
           thermopropionicum SI]
          Length = 303

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             +C  CK  +C++ C  +     E  + I  + CI CG CE  C   AI+
Sbjct: 54  ATSCKFCK--NCIKACKKEAIIAEEKGVLIDRNLCIRCGKCEEVCLYKAIE 102


>gi|146284315|ref|YP_001174468.1| ferredoxin [Pseudomonas stutzeri A1501]
 gi|145572520|gb|ABP81626.1| ferredoxin [Pseudomonas stutzeri A1501]
 gi|327482699|gb|AEA86009.1| ferredoxin [Pseudomonas stutzeri DSM 4166]
          Length = 83

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD 
Sbjct: 1  MSLKITDDCINCDV--CEPECPNSAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTE 60
          I  D  
Sbjct: 59 IPLDEN 64


>gi|157960268|ref|YP_001500302.1| formate dehydrogenase subunit beta [Shewanella pealeana ATCC
           700345]
 gi|157845268|gb|ABV85767.1| formate dehydrogenase, beta subunit [Shewanella pealeana ATCC
           700345]
          Length = 300

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    C+  C       +  N +     D+C  CG C   CP D  + D     + 
Sbjct: 97  ACMHCDDPACLTACSTKGAIVQRANGVVDFDSDKCTGCGYCVSACPFDVPRLD-PIDQKA 155

Query: 66  W 66
           +
Sbjct: 156 Y 156


>gi|77461570|ref|YP_351077.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
          Pf0-1]
 gi|229593162|ref|YP_002875281.1| ferredoxin [Pseudomonas fluorescens SBW25]
 gi|77385573|gb|ABA77086.1| ferredoxin [Pseudomonas fluorescens Pf0-1]
 gi|229365028|emb|CAY53192.1| ferredoxin [Pseudomonas fluorescens SBW25]
          Length = 83

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP     +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNAAISQGEEIYVIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D     
Sbjct: 59 IPLDEAHPE 67


>gi|13541825|ref|NP_111513.1| ferredoxin subunit of tungsten formylmethanofuran dehydrogenase
          [Thermoplasma volcanium GSS1]
 gi|14325262|dbj|BAB60166.1| ferredoxin [Thermoplasma volcanium GSS1]
          Length = 70

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C    CV +CP D  +  E  + IH ++CI+CG C   CP  AI  +
Sbjct: 17 CNYCG--ACVGMCPTDAIWLDETVIKIHEEKCIECGFCIVGCPTGAINAE 64


>gi|188492317|ref|ZP_02999587.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
 gi|188487516|gb|EDU62619.1| 4Fe-4S binding domain protein [Escherichia coli 53638]
          Length = 157

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|157157371|ref|YP_001465049.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli E24377A]
 gi|300925653|ref|ZP_07141516.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|301328345|ref|ZP_07221444.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|307314632|ref|ZP_07594232.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|157079401|gb|ABV19109.1| 4Fe-4S binding domain protein [Escherichia coli E24377A]
 gi|300418241|gb|EFK01552.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300845206|gb|EFK72966.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|306905845|gb|EFN36369.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|315062860|gb|ADT77187.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli W]
 gi|323376549|gb|ADX48817.1| hypothetical protein EKO11_0153 [Escherichia coli KO11]
          Length = 157

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|15804119|ref|NP_290158.1| hypothetical protein Z4998 [Escherichia coli O157:H7 EDL933]
 gi|15833710|ref|NP_312483.1| hypothetical protein ECs4456 [Escherichia coli O157:H7 str. Sakai]
 gi|82545944|ref|YP_409891.1| hypothetical protein SBO_3581 [Shigella boydii Sb227]
 gi|168746879|ref|ZP_02771901.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753395|ref|ZP_02778402.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759667|ref|ZP_02784674.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168765990|ref|ZP_02790997.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772463|ref|ZP_02797470.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779726|ref|ZP_02804733.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785447|ref|ZP_02810454.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|168797413|ref|ZP_02822420.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|191165250|ref|ZP_03027093.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|194431034|ref|ZP_03063327.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|195935105|ref|ZP_03080487.1| hypothetical protein EscherichcoliO157_01395 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807546|ref|ZP_03249883.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814607|ref|ZP_03255936.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819373|ref|ZP_03259693.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397848|ref|YP_002273059.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921040|ref|YP_002295124.1| putative electron transport protein [Escherichia coli SE11]
 gi|217325836|ref|ZP_03441920.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218697290|ref|YP_002404957.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli 55989]
 gi|254795530|ref|YP_003080367.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O157:H7 str. TW14359]
 gi|256020921|ref|ZP_05434786.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component [Shigella
           sp. D9]
 gi|260858031|ref|YP_003231922.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O26:H11 str. 11368]
 gi|260870304|ref|YP_003236706.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O111:H- str. 11128]
 gi|261224892|ref|ZP_05939173.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254209|ref|ZP_05946742.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291284950|ref|YP_003501768.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. CB9615]
 gi|300815195|ref|ZP_07095420.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300822022|ref|ZP_07102165.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|309797567|ref|ZP_07691956.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|332282143|ref|ZP_08394556.1| hydrogenase 4Fe-4S ferredoxin-type component [Shigella sp. D9]
 gi|12518314|gb|AAG58722.1|AE005584_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363931|dbj|BAB37879.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|81247355|gb|ABB68063.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187771623|gb|EDU35467.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018443|gb|EDU56565.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002389|gb|EDU71375.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358874|gb|EDU77293.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364728|gb|EDU83147.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369477|gb|EDU87893.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374644|gb|EDU93060.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC869]
 gi|189379940|gb|EDU98356.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. EC508]
 gi|190904652|gb|EDV64358.1| 4Fe-4S binding domain protein [Escherichia coli B7A]
 gi|194420489|gb|EDX36565.1| 4Fe-4S binding domain protein [Shigella dysenteriae 1012]
 gi|208727347|gb|EDZ76948.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735884|gb|EDZ84571.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739496|gb|EDZ87178.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159248|gb|ACI36681.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209755058|gb|ACI75841.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755060|gb|ACI75842.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755062|gb|ACI75843.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755064|gb|ACI75844.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209755066|gb|ACI75845.1| hypothetical protein ECs4456 [Escherichia coli]
 gi|209914299|dbj|BAG79373.1| putative electron transport protein [Escherichia coli SE11]
 gi|217322057|gb|EEC30481.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354022|emb|CAV00522.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli 55989]
 gi|254594930|gb|ACT74291.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O157:H7 str. TW14359]
 gi|257756680|dbj|BAI28182.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O26:H11 str. 11368]
 gi|257766660|dbj|BAI38155.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O111:H- str. 11128]
 gi|290764823|gb|ADD58784.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. CB9615]
 gi|300525385|gb|EFK46454.1| 4Fe-4S binding domain protein [Escherichia coli MS 119-7]
 gi|300532087|gb|EFK53149.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|308118837|gb|EFO56099.1| 4Fe-4S binding domain protein [Escherichia coli MS 145-7]
 gi|320175867|gb|EFW50947.1| Electron transport protein HydN [Shigella dysenteriae CDC 74-1112]
 gi|320178126|gb|EFW53104.1| Electron transport protein HydN [Shigella boydii ATCC 9905]
 gi|320187730|gb|EFW62405.1| Electron transport protein HydN [Shigella flexneri CDC 796-83]
 gi|320191370|gb|EFW66020.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639894|gb|EFX09488.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str. G5101]
 gi|320645057|gb|EFX14081.1| 4Fe-4S binding domain protein [Escherichia coli O157:H- str.
           493-89]
 gi|320650324|gb|EFX18807.1| 4Fe-4S binding domain protein [Escherichia coli O157:H- str. H
           2687]
 gi|320655898|gb|EFX23821.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661679|gb|EFX29094.1| 4Fe-4S binding domain protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666703|gb|EFX33686.1| 4Fe-4S binding domain protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323155476|gb|EFZ41656.1| iron-sulfur protein [Escherichia coli EPECa14]
 gi|323174232|gb|EFZ59860.1| iron-sulfur protein [Escherichia coli LT-68]
 gi|323179462|gb|EFZ65029.1| iron-sulfur protein [Escherichia coli 1180]
 gi|323939526|gb|EGB35734.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323944529|gb|EGB40600.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324017903|gb|EGB87122.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|324116547|gb|EGC10464.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326337422|gb|EGD61257.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1044]
 gi|326339947|gb|EGD63754.1| Electron transport protein HydN [Escherichia coli O157:H7 str.
           1125]
 gi|332084535|gb|EGI89730.1| iron-sulfur protein [Shigella dysenteriae 155-74]
 gi|332089497|gb|EGI94601.1| iron-sulfur protein [Shigella boydii 3594-74]
 gi|332104495|gb|EGJ07841.1| hydrogenase 4Fe-4S ferredoxin-type component [Shigella sp. D9]
          Length = 157

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|329897534|ref|ZP_08272141.1| Thioredoxin reductase [gamma proteobacterium IMCC3088]
 gi|328921129|gb|EGG28534.1| Thioredoxin reductase [gamma proteobacterium IMCC3088]
          Length = 438

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    CV  CP        G   + I+   CI  G C+  CP DAI
Sbjct: 60  CLGCG--ACVNACPEGDVLGLIGGKSVLINGANCIGHGACKAACPFDAI 106



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 35 IHPDECIDCGVCEPECPVD 53
          I P +C+ CG C   CP  
Sbjct: 55 IDPSKCLGCGACVNACPEG 73


>gi|310780423|ref|YP_003968755.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
 gi|309749746|gb|ADO84407.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
          Length = 263

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV T ENC  C    C +VCPVD    + EN      D+C  C  C   CP  AI 
Sbjct: 185 YVYTDENCTGCGL--CAKVCPVDNIIVDKENKKIALQDKCFGCFACIQNCPSRAIH 238



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + EG        + C  CG+C   CPVD I  D E
Sbjct: 178 YGEGIENYVYTDENCTGCGLCAKVCPVDNIIVDKE 212


>gi|299483498|gb|ADJ19579.1| putative Fe-S PAS/PAC sensor protein [Treponema primitia ZAS-2]
          Length = 583

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C+  CPV      +    I P  CI CG C   CP  A
Sbjct: 12 ECQDC--FKCISRCPVKSIQVKDGHAEIIPKICIYCGNCVISCPARA 56


>gi|291228641|ref|XP_002734288.1| PREDICTED: ATP-binding cassette, sub-family E, member 1-like
          [Saccoglossus kowalevskii]
          Length = 488

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV      C     N     I  + CI CG+C  +CP +A
Sbjct: 12 VSTDKCKPKRCR-QECKKSCPVVRMGKLCIEVTSNDKIAYISEELCIGCGICAKKCPFEA 70

Query: 55 I 55
          I
Sbjct: 71 I 71


>gi|297568400|ref|YP_003689744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924315|gb|ADH85125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 189

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV+VCP    Y+ E+ L  I    CI C  C   CP DA
Sbjct: 68  CQHCQNPPCVKVCPTSASYQTEDGLVAIDYKRCIVCASCILACPYDA 114



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 33 LAIHPDECIDCGVCEPEC 50
          + + PD+CIDC  C+  C
Sbjct: 11 MVVDPDKCIDCKACDVAC 28


>gi|170758629|ref|YP_001788890.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405618|gb|ACA54029.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
          Length = 449

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKH----TDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK     T C   CP D     +  N   I  + C DCG C   CP  +I
Sbjct: 81  DCSMDCKKEGGKTFCQSSCPFDAILINKKTNSTYIDTERCTDCGFCVEACPTGSI 135



 Score = 33.6 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE 28
           TY+ TE C  C    CVE CP     +
Sbjct: 113 TYIDTERCTDCGF--CVEACPTGSILD 137


>gi|192289827|ref|YP_001990432.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
 gi|192283576|gb|ACE99956.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris TIE-1]
          Length = 607

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+T  C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 544 VITSQCTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 601

Query: 59  TEP 61
           T  
Sbjct: 602 TPA 604


>gi|23394377|gb|AAN31478.1| NADH dehydrogenase [Phytophthora infestans]
          Length = 211

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 110 ERCIACKL--CEAICPAQAITIEAEPRADGARRTTRYDIDMTKCIYCGFCQEACPVDAI 166



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 110 ERCIACKLCEAICPAQAITIEAEPRAD 136



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 151 CIYCGF--CQEACPVDAIVEGPNF 172


>gi|58582129|ref|YP_201145.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426723|gb|AAW75760.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 108

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
           M+  +   C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 15  MSLKINALCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 72

Query: 55  IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
           I PD       +  L    +     P +  K+   P
Sbjct: 73  IDPDPAIPETHDQLLAKLMQLQRDHPELYEKEPPAP 108


>gi|146277735|ref|YP_001167894.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025]
 gi|145555976|gb|ABP70589.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17025]
          Length = 164

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E  +         I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAACPVDCIDVVKAETPDGRWYPESFRINFARCIFCGYCEEACPTSAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 107 LTPDVELADY 116


>gi|312876536|ref|ZP_07736519.1| protein of unknown function DUF362 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796747|gb|EFR13093.1| protein of unknown function DUF362 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 375

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIK 363



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
               + CI C  C   CP  AI+
Sbjct: 312 VFDRNICIGCAECFNACPAQAIE 334


>gi|312792686|ref|YP_004025609.1| hypothetical protein Calkr_0447 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179826|gb|ADQ39996.1| protein of unknown function DUF362 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 375

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIK 363



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
               + CI C  C   CP  AI+
Sbjct: 312 VFDRNICIGCAECFNACPAQAIE 334


>gi|302344053|ref|YP_003808582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640666|gb|ADK85988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 384

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 18/86 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENF-------------LAIHPDECIDCGVCEPE 49
            E CI C    CV  CP         G +                   ++CI CG C   
Sbjct: 192 AERCIACGQ--CVRRCPGLAIRLVKRGPDMPPAPAGSEKPELCAVKDAEKCIGCGDCILT 249

Query: 50  CPVDAIKPDTEPGLELWLKINSEYAT 75
           CP  AI+   +  +  +++  + Y  
Sbjct: 250 CPQSAIEIAWDAQIPQFMRRMAAYTK 275



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)

Query: 35  IHPDECIDCGVCEPECPVDAIK-----PDTEPG 62
           I  + CI CG C   CP  AI+     PD  P 
Sbjct: 190 IRAERCIACGQCVRRCPGLAIRLVKRGPDMPPA 222


>gi|291544581|emb|CBL17690.1| Iron only hydrogenase large subunit, C-terminal domain
          [Ruminococcus sp. 18P13]
          Length = 431

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLELW 66
          C  C  T+C++ CP            I  + CIDCG C   CP  A     D+   ++ +
Sbjct: 16 CKGC--TNCIKRCPTQAIRVRNRKAEITNECCIDCGECIRICPHHAKEATYDSPDVMKQY 73


>gi|296136307|ref|YP_003643549.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
 gi|295796429|gb|ADG31219.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
          Length = 210

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CI C  T C++ CPVD      +    +  D C  C +C P CPVD I+ + +  
Sbjct: 88  CIGC--TLCIQACPVDAIAGVSKRMHTVIDDWCTGCALCLPPCPVDCIRMEAQAD 140



 Score = 43.2 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 25  CFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C  EG      I P  CI C +C   CPVDAI
Sbjct: 72  CGTEGPRERAVIDPALCIGCTLCIQACPVDAI 103


>gi|255016076|ref|ZP_05288202.1| hypothetical protein B2_19400 [Bacteroides sp. 2_1_7]
          Length = 256

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T+ CI C    C +VCP        +      D C+ C  C   CPV AI+ 
Sbjct: 191 TDACISCG--ICAKVCPTGTISLSGDGKPEWADSCVQCVACIHRCPVRAIEY 240



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 38  DECIDCGVCEPECPVDAIKP--DTEPGL 63
           D CI CG+C   CP   I    D +P  
Sbjct: 192 DACISCGICAKVCPTGTISLSGDGKPEW 219


>gi|255014281|ref|ZP_05286407.1| putative pyruvate formate-lyase 3 activating enzyme [Bacteroides
           sp. 2_1_7]
 gi|256841502|ref|ZP_05547009.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|256737345|gb|EEU50672.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
          Length = 309

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK 
Sbjct: 59  VKNKCIGCG--RCEAICPRGNIAIQDHFPVFNRQACVACKACERICPQNAIKF 109


>gi|256827263|ref|YP_003151222.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
           oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Cryptobacterium
           curtum DSM 15641]
 gi|256583406|gb|ACU94540.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
           oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Cryptobacterium
           curtum DSM 15641]
          Length = 355

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTE 60
           V  + C  C    C   CP        +   +     + C  C VCE  CP DAI   +E
Sbjct: 260 VDAQRCTGCLQ--CYLYCPDGAIKRTPSAAVVVSVDTEFCKGCAVCEQVCPFDAISMVSE 317

Query: 61  PGLEL 65
             ++ 
Sbjct: 318 ATIKQ 322


>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 624

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 3   YVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YV+  E C  C    C   CP      E      I  ++C  CG+C  +C   AI+
Sbjct: 569 YVINPELCKGCGL--CARSCPQSAISGERGKPYVIDQEKCAKCGICVEKCKFKAIE 622



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +CP            I+P+ C  CG+C   CP  AI  +
Sbjct: 557 ICPSG-MCTAFKKYVINPELCKGCGLCARSCPQSAISGE 594


>gi|126462511|ref|YP_001043625.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029]
 gi|156632694|sp|A3PKI7|NUOI2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|126104175|gb|ABN76853.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17029]
          Length = 164

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E  +         I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAACPVDCIDVVKAETPDGRWYPESFRINFARCIFCGYCEEACPTSAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 107 LTPDVELADY 116


>gi|77463081|ref|YP_352585.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1]
 gi|126461953|ref|YP_001043067.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029]
 gi|221638937|ref|YP_002525199.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131]
 gi|332557954|ref|ZP_08412276.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
 gi|115502510|sp|Q3J3F0|NUOI1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|156632691|sp|A3PIX9|NUOI1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|77387499|gb|ABA78684.1| Subunit of NADH-ubiquinone oxidoreductase (Complex I) that contains
           2 Fe-S centers [Rhodobacter sphaeroides 2.4.1]
 gi|126103617|gb|ABN76295.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159718|gb|ACM00698.1| NADH-quinone oxidoreductase subunit I 1 [Rhodobacter sphaeroides
           KD131]
 gi|332275666|gb|EGJ20981.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 122



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 66 ERCIACKLCEAVCPAQAITIDAEPRED 92



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 107 CIYCGF--CQEACPVDAIVEGPNF 128


>gi|260833833|ref|XP_002611916.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae]
 gi|229297289|gb|EEN67925.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae]
          Length = 218

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 117 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 173



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 117 ERCIACKLCEAICPAQAITIEAEPRAD 143



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 158 CIYCGF--CQEACPVDAIVEGPNF 179


>gi|153938366|ref|YP_001392904.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|152934262|gb|ABS39760.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|295320881|gb|ADG01259.1| [Fe] hydrogenase [Clostridium botulinum F str. 230613]
          Length = 449

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 8   NC-ILCKH----TDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +C + CK     T C   CP D     +  N   I  + C DCG C   CP  +I
Sbjct: 81  DCSMDCKKEGGKTFCQNSCPFDAILINKKTNSTYIDTERCTDCGFCVEACPTGSI 135



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE 28
           TY+ TE C  C    CVE CP     +
Sbjct: 113 TYIDTERCTDCGF--CVEACPTGSILD 137


>gi|159042495|ref|YP_001541747.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157921330|gb|ABW02757.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
           maquilingensis IC-167]
          Length = 651

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAI 55
           VV +   CI CK  DC + CPV       +F+         CI  G C   CP + I
Sbjct: 565 VVKDPGLCIECKTKDCAKACPVGNSNMPGSFIKKGYYKSSTCIGVGDCVEACPYNNI 621


>gi|119897731|ref|YP_932944.1| electron transport complex protein RnfB [Azoarcus sp. BH72]
 gi|166225080|sp|A1K5F2|RNFB_AZOSB RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|119670144|emb|CAL94057.1| probable electron transport complex protein RnfB [Azoarcus sp.
           BH72]
          Length = 183

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPD 58
            Y+    CI C  T C++ CPVD        +   + P  C  C +C   CPVD I  +
Sbjct: 106 AYIDENVCIGC--TLCLQACPVDAIVGAAKQMHTVVDP-LCTGCELCVAPCPVDCIYME 161


>gi|20090344|ref|NP_616419.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19915348|gb|AAM04899.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 102

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 11 LCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C +   CV VCP       E ++ +    CI CG+C+  CPV AI+
Sbjct: 53 KCGYCGACVGVCPKGALELVETWIEVDESTCIKCGICDRICPVGAIE 99


>gi|307304402|ref|ZP_07584153.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
 gi|307318109|ref|ZP_07597545.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306896150|gb|EFN26900.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306902604|gb|EFN33198.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
          Length = 188

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC                   I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 640

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           Y+  + C  C    C   CP D    G+  +  I   +CI CG C   CP 
Sbjct: 563 YIDPDKCKAC--MICARNCPTDAIKGGKGLIHTIEQGKCIKCGACVDTCPA 611



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I PD+C  C +C   CP DAIK
Sbjct: 562 FYIDPDKCKACMICARNCPTDAIK 585


>gi|197285613|ref|YP_002151485.1| NADH dehydrogenase subunit I [Proteus mirabilis HI4320]
 gi|227356116|ref|ZP_03840506.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906]
 gi|226737407|sp|B4EZC3|NUOI_PROMH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|194683100|emb|CAR43657.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis HI4320]
 gi|227163761|gb|EEI48673.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906]
          Length = 180

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C         +G     F  I+   CI CG+CE  CP  A++
Sbjct: 58  ERCVACNL--CAAVCPVGCISLQKAEHEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|188580277|ref|YP_001923722.1| NADH dehydrogenase subunit I [Methylobacterium populi BJ001]
 gi|226737400|sp|B1ZA38|NUOI_METPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|179343775|gb|ACB79187.1| NADH-quinone oxidoreductase, chain I [Methylobacterium populi
           BJ001]
          Length = 162

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAI 117



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 21 CPVDCFYEGENFLAIHP--------DECIDCGVCEPECPVDAIKPDTEP 61
           P +  + G  F   H         + CI C +CE  CP  AI  +  P
Sbjct: 35 YPFEMGHRGPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCG--MCQEACPVDAIVEGPNF 123


>gi|16263279|ref|NP_436072.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium
           meliloti 1021]
 gi|81774724|sp|Q92YN8|NUOI2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|14523955|gb|AAK65484.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium
           meliloti 1021]
          Length = 188

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC                   I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCDCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|332561493|ref|ZP_08415806.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides
           WS8N]
 gi|332273995|gb|EGJ19313.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides
           WS8N]
          Length = 305

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            E CI C    C+ VC V     G+N   +   +CI CG C   CP +A+K
Sbjct: 58  AEACIGCG--RCIPVCSVQALS-GDNPGFVDRSKCIRCGECTKVCPTEALK 105



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI CG C P C V A+  D  
Sbjct: 59 EACIGCGRCIPVCSVQALSGDNP 81


>gi|242239961|ref|YP_002988142.1| NADH dehydrogenase subunit I [Dickeya dadantii Ech703]
 gi|242132018|gb|ACS86320.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech703]
          Length = 180

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|225024115|ref|ZP_03713307.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC
           23834]
 gi|224943140|gb|EEG24349.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC
           23834]
          Length = 159

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
 gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
          Length = 625

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C  + C   CPV       ++   I   +CI CG C   C   A+  +
Sbjct: 575 EKCKGC--SKCARNCPVGAITGKIKSPYVIDSAKCIKCGACLENCSFGAVYTE 625



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I+P++C  C  C   CPV AI
Sbjct: 572 INPEKCKGCSKCARNCPVGAI 592


>gi|157373371|ref|YP_001471971.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           sediminis HAW-EB3]
 gi|157315745|gb|ABV34843.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella
           sediminis HAW-EB3]
          Length = 225

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            Y ++  C  C    CV+ CP    +   E+ L  +  + CI C  C   CP DA + D 
Sbjct: 78  AYYMSIGCNHCSEPVCVKACPTGAMHKRREDGLVHVAQELCIGCESCARACPYDAPQIDR 137

Query: 60  E 60
           E
Sbjct: 138 E 138


>gi|126465204|ref|YP_001040313.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA
           [Staphylothermus marinus F1]
 gi|126014027|gb|ABN69405.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA
           [Staphylothermus marinus F1]
          Length = 624

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 3   YVVTEN-CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y + ++ C  C    CV +  CP     +G     I  + C  CG+C   CP +AI    
Sbjct: 556 YTILQDKCTGC--MVCVNLLGCPAIIVPKGAKKPVILSELCAGCGLCAQVCPFNAIV-LK 612

Query: 60  EPGLELWLK 68
           E G   W++
Sbjct: 613 EKGSPNWIE 621


>gi|91092422|ref|XP_968009.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Tribolium
          castaneum]
 gi|270004744|gb|EFA01192.1| hypothetical protein TcasGA2_TC010519 [Tribolium castaneum]
          Length = 608

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV      C     N    AI  + CI CG+C  +CP +A
Sbjct: 19 VNADKCKPKRCR-QECKKSCPVVRMGKLCIEVTPNSKMAAISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|91793219|ref|YP_562870.1| electron transport complex protein RnfB [Shewanella denitrificans
           OS217]
 gi|91715221|gb|ABE55147.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           denitrificans OS217]
          Length = 205

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            I  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGAGKLMHTVIAAD-CTGCDLCVEPCPVDCI 159


>gi|82778809|ref|YP_405158.1| hypothetical protein SDY_3706 [Shigella dysenteriae Sd197]
 gi|309785895|ref|ZP_07680526.1| iron-sulfur protein [Shigella dysenteriae 1617]
 gi|81242957|gb|ABB63667.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308927015|gb|EFP72491.1| iron-sulfur protein [Shigella dysenteriae 1617]
          Length = 157

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|116750952|ref|YP_847639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700016|gb|ABK19204.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 950

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 25/79 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI------------------HPDECI--- 41
           YV  ++CI C   +C +VCPV+   E    ++I                      CI   
Sbjct: 31  YVDMDHCISCG--ECAKVCPVEVKDEFNEKMSIRKAIYVKYPQAVPLKYQIDGRNCIRVR 88

Query: 42  --DCGVCEPECPVDAIKPD 58
             DCG CE  CP  A++ D
Sbjct: 89  GGDCGGCEKVCPSGAVRFD 107



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 9/54 (16%)

Query: 9   CILCKHTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C++VCP             G     +    C  CG C+  CP + I
Sbjct: 870 CDGC--ALCLDVCPYGALQLEEIPGSNGRQHAVVKAARCKGCGACQATCPKEGI 921



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I+   C  C +C   CP  A++ +  PG
Sbjct: 865 INETTCDGCALCLDVCPYGALQLEEIPG 892


>gi|113969407|ref|YP_733200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella sp. MR-4]
 gi|114046641|ref|YP_737191.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella sp. MR-7]
 gi|113884091|gb|ABI38143.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          sp. MR-4]
 gi|113888083|gb|ABI42134.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          sp. MR-7]
          Length = 83

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I PD C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPDRCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IDPD 62


>gi|94309231|ref|YP_582441.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93353083|gb|ABF07172.1| ferredoxin (4Fe-4S cluster-containing protein) (fdx-like)
          [Cupriavidus metallidurans CH34]
          Length = 86

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP +    G     I P +C +C        C+  CPV  
Sbjct: 1  MALMITDDCINCDV--CEPECPNEAISMGPEIYEIDPGKCTECVGHFDEPQCQQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPKD 62


>gi|294496330|ref|YP_003542823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292667329|gb|ADE37178.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 541

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 4   VVTE---NCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECID--CGVCEPECPVDA 54
           V+ E   +CILC    C + CP D        G+ ++    ++C+   C  C   CPVDA
Sbjct: 473 VIEEEAPDCILC--RKCEKECPEDAIIALEENGKKYVHYDSEKCLGTSCHRCIAICPVDA 530

Query: 55  IKP 57
           I  
Sbjct: 531 IHY 533


>gi|291280349|ref|YP_003497184.1| NADH-quinone oxidoreductase subunit I [Deferribacter desulfuricans
           SSM1]
 gi|290755051|dbj|BAI81428.1| NADH-quinone oxidoreductase, I subunit [Deferribacter desulfuricans
           SSM1]
          Length = 153

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C  VCP +C +     G N         I  D CI CG CE  CPVDAI 
Sbjct: 63  CVGCYL--CERVCPSECIHIETDAGPNGERLIRKYEIELDRCIYCGFCEEACPVDAIH 118


>gi|270296346|ref|ZP_06202546.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273750|gb|EFA19612.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 315

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  CV+ CP     +G+    +  ++CI C  C   CP  A   D  
Sbjct: 243 VDAERCTHCGY--CVKHCPAGAIIKGDECNTV-AEKCIKCCACVKGCPQKARTYDMP 296


>gi|258404218|ref|YP_003196960.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796445|gb|ACV67382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 144

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + C+ C    C E CP     +     +      CI CG C   CPVDAI  D E
Sbjct: 51  AQVCLACDPAPCAEACPTGAMRQRKGGGVVYTKSLCIQCGDCARACPVDAIYMDPE 106



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C   CPVD  Y      A  P  CI CG C   CP D ++  T P    
Sbjct: 86  CIQCGD--CARACPVDAIYMDPETNA--PVVCIHCGRCVEFCPHDCLEMVTVPSASK 138


>gi|224370248|ref|YP_002604412.1| HmeE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692965|gb|ACN16248.1| HmeE2 [Desulfobacterium autotrophicum HRM2]
          Length = 274

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           + ++VT  C  CK+  CV+ CP    ++ ++ +  +    CI C  C   CP  +   + 
Sbjct: 131 LPFLVT--CNHCKNAPCVQACPTQATFKRDDGIVLMDFHRCIGCRFCMAACPFGSRSFNF 188

Query: 60  EPGLELWLKINSEYATQWPNITTKK 84
                   ++N ++ T+   +  K 
Sbjct: 189 RDPRPFIDEVNPDFPTRTKGVVEKC 213


>gi|169634069|ref|YP_001707805.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter baumannii SDF]
 gi|169796969|ref|YP_001714762.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter baumannii AYE]
 gi|239501200|ref|ZP_04660510.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter baumannii
          AB900]
 gi|260553988|ref|ZP_05826253.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|260555740|ref|ZP_05827960.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
 gi|169149896|emb|CAM87789.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter baumannii AYE]
 gi|169152861|emb|CAP01891.1| putative ferredoxin [4Fe-4S] (Fdx) [Acinetobacter baumannii]
 gi|260404874|gb|EEW98379.1| ferredoxin [Acinetobacter sp. RUH2624]
 gi|260410651|gb|EEX03949.1| ferredoxin [Acinetobacter baumannii ATCC 19606]
          Length = 87

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    I+PD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIFMGEVIYEINPDLCTECVGHHDQPQCQLFCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D +   
Sbjct: 59 IPKDPQHEE 67


>gi|156537914|ref|XP_001608142.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Nasonia
          vitripennis]
          Length = 608

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C   CPV      C     N    +I  + CI CG+C  +CP +A
Sbjct: 19 VNTDKCKPKRCR-QECKRSCPVVRMGKLCIEVTPNSKIASISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|121535727|ref|ZP_01667530.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305692|gb|EAX46631.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 147

 Score = 50.5 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           V T  C  C    C  VC       E   + L+ HPD+CI CG+C   CPV AI+ 
Sbjct: 81  VDTGRCTHCG--ACTAVCFSRALVLERPTWELSFHPDKCIVCGLCVQACPVRAIRQ 134


>gi|313113434|ref|ZP_07799023.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624161|gb|EFQ07527.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 296

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T  C+ C    C + C +D    +  N       ECI CG+C   CP DAI+ 
Sbjct: 234 VDTHKCVSCG--ACAKACKMDVDITKTPNHA-----ECIRCGMCMKACPTDAIQY 281


>gi|301098846|ref|XP_002898515.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262104940|gb|EEY62992.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 211

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 110 ERCIACKL--CEAICPAQAITIEAEPRADGARRTTSYDIDMTKCIYCGFCQEACPVDAI 166



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 110 ERCIACKLCEAICPAQAITIEAEPRAD 136



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 151 CIYCGF--CQEACPVDAIVEGPNF 172


>gi|239904831|ref|YP_002951569.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794694|dbj|BAH73683.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1]
          Length = 652

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 27/85 (31%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV  E C  C    C+E CP     D F E                     I P  C  
Sbjct: 235 TYVDWELCTGCG--ACMEKCPSKKNPDAFNEKIGPCTSINIPFPQAIPKKAVIDPSTCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP  AI+ D    
Sbjct: 293 FVKGKCGVCAKVCPTKAIRYDMTDE 317



 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C+  CP     E    G+    +    C  CG+C   CP  AI+       +
Sbjct: 584 CVGCG--KCIMTCPFKAIKEVEFRGQKKAEVIETVCQGCGICTSTCPQGAIQLSHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648


>gi|148555900|ref|YP_001263482.1| NADH dehydrogenase subunit I [Sphingomonas wittichii RW1]
 gi|148501090|gb|ABQ69344.1| NADH-quinone oxidoreductase, chain I [Sphingomonas wittichii RW1]
          Length = 161

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 116



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 60 ERCIACKLCEAVCPAQAITIEAEPRDD 86



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 101 CIFCGF--CQEACPVDAIVEGPNFEY 124


>gi|126656634|ref|ZP_01727848.1| transcriptional regulator [Cyanothece sp. CCY0110]
 gi|126621854|gb|EAZ92562.1| transcriptional regulator [Cyanothece sp. CCY0110]
          Length = 532

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+Y ++E+C  C   +C   CP D          I   +C +C G      C  +CP+ +
Sbjct: 1  MSYTISESCPSC--HNCQIDCPTDAIQTENGEYWIDQKKCNNCEGYYQEPQCIVQCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PTP 61


>gi|114707377|ref|ZP_01440274.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506]
 gi|114537258|gb|EAU40385.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506]
          Length = 163

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRQNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGL 63
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P  
Sbjct: 42 PVSPRFRGEHALRRYPNGQERCIACKLCEAICPAQAITIEAGPRQ 86



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|30065142|ref|NP_839313.1| hypothetical protein S4152 [Shigella flexneri 2a str. 2457T]
 gi|56480380|ref|NP_709358.2| hypothetical protein SF3617 [Shigella flexneri 2a str. 301]
 gi|110807760|ref|YP_691280.1| hypothetical protein SFV_3967 [Shigella flexneri 5 str. 8401]
 gi|30043403|gb|AAP19124.1| hypothetical protein S4152 [Shigella flexneri 2a str. 2457T]
 gi|56383931|gb|AAN45065.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|110617308|gb|ABF05975.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281602938|gb|ADA75922.1| 4Fe-4S binding domain protein [Shigella flexneri 2002017]
 gi|313647555|gb|EFS12005.1| iron-sulfur protein [Shigella flexneri 2a str. 2457T]
 gi|332749976|gb|EGJ80388.1| iron-sulfur protein [Shigella flexneri K-671]
 gi|332751362|gb|EGJ81765.1| iron-sulfur protein [Shigella flexneri 2747-71]
 gi|332764223|gb|EGJ94460.1| putative electron transport protein HydN [Shigella flexneri
           2930-71]
 gi|332996354|gb|EGK15981.1| iron-sulfur protein [Shigella flexneri VA-6]
 gi|332997147|gb|EGK16763.1| iron-sulfur protein [Shigella flexneri K-218]
 gi|333012831|gb|EGK32208.1| iron-sulfur protein [Shigella flexneri K-304]
          Length = 157

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|83591649|ref|YP_425401.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574563|gb|ABC21114.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 212

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C+   C  VC +      +  + +  + C+ C +C   CP  A +   +P  
Sbjct: 82  CRHCEDAPCASVCKMAAISRVDGKVLVDAERCVGCRLCLMACPFGATEFVPQPAD 136


>gi|24372832|ref|NP_716874.1| ferredoxin, 4Fe-4S [Shewanella oneidensis MR-1]
 gi|24346934|gb|AAN54319.1|AE015569_5 ferredoxin, 4Fe-4S [Shewanella oneidensis MR-1]
          Length = 83

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I PD C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPDRCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IDPD 62


>gi|11498110|ref|NP_069335.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
 gi|32699494|sp|O29751|HMEA_ARCFU RecName: Full=Hdr-like menaquinol oxidoreductase iron-sulfur
           subunit 1; Short=Hme subunit A; Flags: Precursor
 gi|2650126|gb|AAB90738.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Archaeoglobus fulgidus DSM 4304]
          Length = 269

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           Y +   C  C+H  CV+VC     ++  + +  I    CI C  C   CP  A
Sbjct: 112 YYIPLLCNHCEHPPCVQVCLTKASFKRPDGIVEIDMHRCIGCRYCMIACPYGA 164


>gi|120598032|ref|YP_962606.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella sp. W3-18-1]
 gi|146293897|ref|YP_001184321.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella putrefaciens CN-32]
 gi|120558125|gb|ABM24052.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          sp. W3-18-1]
 gi|145565587|gb|ABP76522.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          putrefaciens CN-32]
 gi|319427269|gb|ADV55343.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella putrefaciens 200]
          Length = 83

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I PD C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPDRCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IDPD 62


>gi|16272998|ref|NP_439225.1| nitrite reductase Fe-S protein [Haemophilus influenzae Rd KW20]
 gi|145627975|ref|ZP_01783776.1| nitrite reductase Fe-S protein [Haemophilus influenzae 22.1-21]
 gi|145638122|ref|ZP_01793732.1| nitrite reductase Fe-S protein [Haemophilus influenzae PittII]
 gi|260580152|ref|ZP_05847982.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|260581880|ref|ZP_05849676.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|1171766|sp|P45015|NRFC_HAEIN RecName: Full=Protein nrfC homolog; Flags: Precursor
 gi|1574621|gb|AAC22725.1| nitrite reductase, Fe-S protein (nrfC) [Haemophilus influenzae Rd
           KW20]
 gi|144979750|gb|EDJ89409.1| nitrite reductase Fe-S protein [Haemophilus influenzae 22.1-21]
 gi|145272451|gb|EDK12358.1| nitrite reductase Fe-S protein [Haemophilus influenzae PittII]
 gi|260093436|gb|EEW77369.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae RdAW]
 gi|260095073|gb|EEW78965.1| cytochrome c nitrite reductase, Fe-S protein [Haemophilus
           influenzae NT127]
 gi|309751287|gb|ADO81271.1| Nitrite reductase complex, Fe-S subunit NrfC [Haemophilus
           influenzae R2866]
          Length = 225

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D CI C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPY 139


>gi|87200306|ref|YP_497563.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
 gi|115502536|sp|Q2G5Z4|NUOI_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|87135987|gb|ABD26729.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
          Length = 161

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMTKCIFCGFCQEACPVDAI 116


>gi|257076625|ref|ZP_05570986.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma
           acidarmanus fer1]
          Length = 629

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)

Query: 3   YVVTEN-CILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEP--ECPVDAIK 56
           Y V ++ C  C   +CVE   CP     +GE  + I+P  C  CGVC     CP +AI+
Sbjct: 572 YTVNQDKCGKC--MNCVENFSCPALFIEKGE--IQINPSICDGCGVCAEPLVCPFNAIE 626


>gi|323704059|ref|ZP_08115672.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfotomaculum nigrificans DSM 574]
 gi|323530979|gb|EGB20905.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfotomaculum nigrificans DSM 574]
          Length = 764

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +V    C+ C    CVEVCP           G     ++P  C  CG C   C   AI
Sbjct: 690 AFVNKRKCMACGV--CVEVCPAKAASLVTDERGNTAAEVNPALCKGCGACSSSCRCGAI 746


>gi|299146847|ref|ZP_07039915.1| putative iron-sulfur cluster-binding protein [Bacteroides sp.
           3_1_23]
 gi|298517338|gb|EFI41219.1| putative iron-sulfur cluster-binding protein [Bacteroides sp.
           3_1_23]
          Length = 312

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VVT+NCI C    C +VCP   +    N + +  D C  C  C   CP  AI+      
Sbjct: 225 FVVTKNCIDCG--ACTDVCPRGNYEFTSNGIKMQGD-CDFCFACIQNCPQKAIQFKKNDE 281

Query: 63  L 63
            
Sbjct: 282 D 282



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 30  ENFLAIHPDECIDCGVCEPECP 51
           EN+  +  + CIDCG C   CP
Sbjct: 222 ENYFVVTKN-CIDCGACTDVCP 242


>gi|269215798|ref|ZP_06159652.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130748|gb|EEZ61824.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 206

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDE-CIDCGVCEPECPVDAIKPDT 59
           T+ ++  C  C +  CV VCPV   Y + E+    H DE CI C +C   CP    K D 
Sbjct: 65  TFHLSMTCNNCANPACVAVCPVGAMYIDEEDGTTQHDDEMCIGCQMCINACPYGVPKFDD 124


>gi|242278076|ref|YP_002990205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120970|gb|ACS78666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 652

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C    C+  CP     E    G+    +    C  CG+C   CP  AI+       +
Sbjct: 584 CIGCG--KCISTCPFGAIKEIDFRGQPKADVIETICQGCGICTSTCPQGAIQLQHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 26/81 (32%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV  + C  C    C+E CP     + F E                     I P+ CI 
Sbjct: 235 TYVDWDKCTGCG--ICMEKCPSKKADNPFDEELGKTTAINIPFPQAIPKKAVIDPNFCIK 292

Query: 43  -----CGVCEPECPVDAIKPD 58
                CGVC   CP +AI  D
Sbjct: 293 IKRDKCGVCAKVCPSEAIVYD 313



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKP 57
            +    CI CG C   CP  AIK 
Sbjct: 578 VVDIKRCIGCGKCISTCPFGAIKE 601


>gi|159905551|ref|YP_001549213.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanococcus maripaludis C6]
 gi|159887044|gb|ABX01981.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanococcus maripaludis C6]
          Length = 85

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+ C+  +C   CP  C  E +    I  D C  C +CE ECPV AIK + E 
Sbjct: 32 DKCVKCE--NCYIFCPEGCIQEKDGKFEIDYDYCKGCRICEKECPVKAIKTEREE 84


>gi|126736053|ref|ZP_01751797.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
 gi|126714610|gb|EBA11477.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
          Length = 167

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 66  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 122



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 66 ERCIACKLCEAVCPAQAITIDAEPRDD 92



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 107 CIYCGF--CQEACPVDAIVEGPNF 128


>gi|134045159|ref|YP_001096645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662784|gb|ABO34430.1| membrane-bound hydrogenase subunit ehaR [Methanococcus maripaludis
           C5]
          Length = 252

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C E+CPV      +  + +   +CI CG CE  CPV AI
Sbjct: 199 DTCINC--MVCSEICPVGAIIYEDGLMKLDDKKCIFCGKCEKNCPVTAI 245



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          YV T  C+ C+   C EVCPV    E   ++   I P++C+ C +C   CPV AI
Sbjct: 42 YVETNKCVRCEL--CYEVCPVQAIKEPSVKSPAEIIPEKCVKCEICAKTCPVGAI 94



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C+ C  T C +VCP               EN ++++ D CI+C VC   CPV AI  +
Sbjct: 162 DLCMGC--TACEKVCPKSSIKVENEMGEIPTENVISLNNDTCINCMVCSEICPVGAIIYE 219

Query: 59  T 59
            
Sbjct: 220 D 220



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E+CI C    C   CP      E    + I+ D C+ C  CE  CP  +IK + E G 
Sbjct: 132 ESCIKCG--ICERFCPTSAIKVEKRTSIDINLDLCMGCTACEKVCPKSSIKVENEMGE 187



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 28/92 (30%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EG------ENFLA------------------IHP 37
           ++ E C+ C+   C + CPV      EG      +N +                   +  
Sbjct: 74  IIPEKCVKCE--ICAKTCPVGAINVLEGRAELKDDNVIYELKEIDVTHRKIRLKKHELDE 131

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + CI CG+CE  CP  AIK +    +++ L +
Sbjct: 132 ESCIKCGICERFCPTSAIKVEKRTSIDINLDL 163


>gi|324005536|gb|EGB74755.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|323698801|ref|ZP_08110713.1| response regulator receiver protein [Desulfovibrio sp. ND132]
 gi|323458733|gb|EGB14598.1| response regulator receiver protein [Desulfovibrio desulfuricans
           ND132]
          Length = 1142

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 21/65 (32%), Gaps = 20/65 (30%)

Query: 9   CILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEPEC 50
           CI C    C EVCPV    E                    N   +  D CI C  C   C
Sbjct: 117 CISCG--RCAEVCPVRVPSEFNAGLTERTAVHLPVPYAIPNHYVLDLDNCIRCWKCHEAC 174

Query: 51  PVDAI 55
           P  AI
Sbjct: 175 PTGAI 179



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC    CV  CP         E  + +    C  CG C   CP  A
Sbjct: 1074 CSLC--QACVSACPYGARAVDTTEEKIIVDEILCQGCGACAAVCPNSA 1119



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 35  IHPDECIDCGVCEPECPV 52
           I P +CI CG C   CPV
Sbjct: 112 IDPAKCISCGRCAEVCPV 129


>gi|323697536|ref|ZP_08109448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. ND132]
 gi|323457468|gb|EGB13333.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans ND132]
          Length = 270

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    CV VCPV   D   EG     I+P  CI C  C   CP  A
Sbjct: 89  PCMQCGSPACVPVCPVVATDKNEEGGIVSQIYP-RCIGCRYCMAACPYHA 137


>gi|254995042|ref|ZP_05277232.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Mississippi]
          Length = 156

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 55  ERCIACKL--CEAICPAQAITIEAAERGDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 111



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 96  CIYCGF--CQEACPVDAIVEGPNFEY 119



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          + CI C +CE  CP  AI  +
Sbjct: 55 ERCIACKLCEAICPAQAITIE 75


>gi|168185724|ref|ZP_02620359.1| electron transfer flavoprotein subunit alpha [Clostridium
          botulinum C str. Eklund]
 gi|169296383|gb|EDS78516.1| electron transfer flavoprotein subunit alpha [Clostridium
          botulinum C str. Eklund]
          Length = 396

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C+ CK   C   CP     E EN  A+  D C  CG C   C  +AI+
Sbjct: 9  DKCVGCK--MCANTCPFGAI-EIENKKAVIKDNCTLCGSCVSVCKFNAIE 55



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I  D+C+ C +C   CP  AI+ +
Sbjct: 6  ILKDKCVGCKMCANTCPFGAIEIE 29


>gi|157373627|ref|YP_001472227.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316001|gb|ABV35099.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 234

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 104 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIGACPYDARFINKETDVAD 163

Query: 64  ELWLKINSEYAT 75
                +NS+ + 
Sbjct: 164 NCDFCLNSKLSK 175


>gi|157960336|ref|YP_001500370.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157845336|gb|ABV85835.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 236

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIAACPYDARFINKETDVAD 165

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 166 NCDFCLNSKLA 176


>gi|118466276|ref|YP_879707.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium avium 104]
 gi|118167563|gb|ABK68460.1| 4Fe-4S binding domain protein [Mycobacterium avium 104]
          Length = 330

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   ++
Sbjct: 133 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPFGVVE 184


>gi|154173868|ref|YP_001408698.1| sulfur reductase FeS subunit [Campylobacter curvus 525.92]
 gi|112802398|gb|EAT99742.1| sulfur reductase FeS subunit [Campylobacter curvus 525.92]
          Length = 188

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + ++C++C+ + CV+VCP    F   E    +    C+ C  C   CP DA
Sbjct: 53  FIRQSCVMCEDSPCVDVCPTGASFKTKEGVTLLDHRICVSCKYCILACPYDA 104


>gi|74318493|ref|YP_316233.1| iron-sulfur cluster protein [Thiobacillus denitrificans ATCC 25259]
 gi|74057988|gb|AAZ98428.1| iron-sulfur cluster protein [Thiobacillus denitrificans ATCC 25259]
          Length = 259

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV+VCP    F   +  + ++   CI C  C   CP  A
Sbjct: 120 CQHCAEPPCVDVCPTGASFKRADGIVLVNRHTCIGCRYCMMACPYKA 166


>gi|26249298|ref|NP_755338.1| putative electron transport protein ygfS [Escherichia coli CFT073]
 gi|91212263|ref|YP_542249.1| putative electron transport protein YgfS [Escherichia coli UTI89]
 gi|237706472|ref|ZP_04536953.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|26109705|gb|AAN81908.1|AE016765_310 Putative electron transport protein ygfS [Escherichia coli CFT073]
 gi|91073837|gb|ABE08718.1| putative electron transport protein YgfS [Escherichia coli UTI89]
 gi|226899512|gb|EEH85771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 163

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|20808132|ref|NP_623303.1| Fe-S-cluster-containing hydrogenase components 1
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516720|gb|AAM24907.1| Fe-S-cluster-containing hydrogenase components 1
           [Thermoanaerobacter tengcongensis MB4]
          Length = 161

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV VCP    +  E+ L  ++  +CI C +C   CP  A+
Sbjct: 61  CRHCEDAPCVAVCPTGAMHRREDGLNLVNLPQCIGCWMCALACPFGAV 108



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECID---CGVCEPECPVDAIKPDTEPGLE 64
           CI C    C   CP      G+        EC+D      C   CP  A+   T    E
Sbjct: 93  CIGC--WMCALACPFGAVSRGDGKAIKCDRECLDEEGVPACVRACPTGALVFKTVEEFE 149


>gi|323966686|gb|EGB62118.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251647|gb|EGE63333.1| hydrogenase-4 component A [Escherichia coli STEC_7v]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans
           SSM1]
 gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans
           SSM1]
          Length = 596

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV E+ C  C    C +VCPV     E      I   +C+ C  C   CP +AI
Sbjct: 543 FVVDEDRCKKCG--ICFKVCPVGAISWEKGKPAYIDKSKCVKCRECIVNCPFNAI 595



 Score = 40.1 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 11  LCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
             K   C    CP     E      +  D C  CG+C   CPV AI  +
Sbjct: 526 HIKDRKCPARECPE--LIE----FVVDEDRCKKCGICFKVCPVGAISWE 568


>gi|269968577|ref|ZP_06182579.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B]
 gi|269826788|gb|EEZ81120.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B]
          Length = 553

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGRSPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|163850509|ref|YP_001638552.1| NADH dehydrogenase subunit I [Methylobacterium extorquens PA1]
 gi|218529206|ref|YP_002420022.1| NADH dehydrogenase subunit I [Methylobacterium chloromethanicum
           CM4]
 gi|240137574|ref|YP_002962045.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens AM1]
 gi|254560045|ref|YP_003067140.1| NADH-quinone oxidoreductase subunit I [Methylobacterium extorquens
           DM4]
 gi|226737399|sp|A9W1M5|NUOI_METEP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772593|sp|B7KQ58|NUOI_METC4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|163662114|gb|ABY29481.1| NADH-quinone oxidoreductase, chain I [Methylobacterium extorquens
           PA1]
 gi|218521509|gb|ACK82094.1| NADH-quinone oxidoreductase, chain I [Methylobacterium
           chloromethanicum CM4]
 gi|240007542|gb|ACS38768.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens AM1]
 gi|254267323|emb|CAX23155.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens DM4]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAI 117



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 21 CPVDCFYEGENFLAIHP--------DECIDCGVCEPECPVDAIKPDTEP 61
           P +  + G  F   H         + CI C +CE  CP  AI  +  P
Sbjct: 35 YPFEMGHRGPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCG--MCQEACPVDAIVEGPNF 123


>gi|37679887|ref|NP_934496.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|37198632|dbj|BAC94467.1| ferredoxin [Vibrio vulnificus YJ016]
          Length = 557

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP          +  + + I+P  C   G C   CP +AI
Sbjct: 177 TDLCAHSSRGVKGCERCVDACPAGALTSQGSDKTGHHIEINPYLCQGVGTCATSCPTEAI 236

Query: 56  KPDTEPGLE--LWLK 68
                   E   +++
Sbjct: 237 HYALPNPQETQKFIE 251



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T  C LC    CV VCP    +       L     +C+ CG+C   CP
Sbjct: 421 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACP 466


>gi|332997622|gb|EGK17236.1| iron-sulfur protein [Shigella flexneri K-272]
 gi|333013370|gb|EGK32742.1| iron-sulfur protein [Shigella flexneri K-227]
          Length = 157

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|325832620|ref|ZP_08165418.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|325485941|gb|EGC88401.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 190

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C  C + +CV VCP    Y+ ++ +  +   +CI C  C   CP      DT  
Sbjct: 53  YYLPVSCQHCDNPECVSVCPTGASYKRDDGVVLVDHSKCIGCQYCVMACPYGVRAYDTSK 112

Query: 62  G 62
            
Sbjct: 113 D 113


>gi|322780735|gb|EFZ09992.1| hypothetical protein SINV_04706 [Solenopsis invicta]
          Length = 286

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 107 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 163



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 107 ERCIACKLCEAICPAQAITIEAEERAD 133



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 148 CIYCGF--CQEACPVDAIVEGPNF 169


>gi|310658701|ref|YP_003936422.1| electron transport complex, rnfABCdge type subunit B [Clostridium
           sticklandii DSM 519]
 gi|308825479|emb|CBH21517.1| Electron transport complex, RnfABCDGE type, B subunit precursor
           [Clostridium sticklandii]
          Length = 325

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
             V+ + CI C  T C + CP +   EGE      + PD+CI C VC  +CP  AI+
Sbjct: 270 ARVIEDLCIGC--TICAKNCPTNAI-EGELKAIHKVDPDKCIGCKVCYQKCPKKAIE 323



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C    CV+ CP        N   I   +C  C VC  +CP  AI  D 
Sbjct: 216 CIGC--QICVKSCPFQAITFENNLAKIDYSKCTQCMVCVEKCPTKAISGDL 264



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
               C  VCP D  +  ++ +  +  ++C+ CG C   CP   I      G E+ +  NS
Sbjct: 143 GFGTCENVCPFDAIHVYDDGIAHVDEEKCVGCGKCIEACPKAVIHW-IPYGQEVSIDCNS 201

Query: 72  E 72
           +
Sbjct: 202 K 202



 Score = 40.9 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    CVE CP               +  D CI C +C   CP +AI+ + + 
Sbjct: 245 CTQC--MVCVEKCPTKAISGDLSKRKTARVIEDLCIGCTICAKNCPTNAIEGELKA 298



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 18/83 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGV 45
            +V  E C+ C    C+E CP    +                +G++        CI C +
Sbjct: 164 AHVDEEKCVGCG--KCIEACPKAVIHWIPYGQEVSIDCNSKEKGKDVKEKCSVGCIGCQI 221

Query: 46  CEPECPVDAIKPDTEPGLELWLK 68
           C   CP  AI  +       + K
Sbjct: 222 CVKSCPFQAITFENNLAKIDYSK 244


>gi|302348066|ref|YP_003815704.1| Ferredoxin like protein [Acidilobus saccharovorans 345-15]
 gi|302328478|gb|ADL18673.1| Ferredoxin like protein [Acidilobus saccharovorans 345-15]
          Length = 101

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 2  TYVVTE--NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++V +   C  C    C+ +CP  C+    + +    + C++CG C   CP+DAI  + 
Sbjct: 30 PHIVVDYTKCEKCPAKPCIYLCPAGCYTLAGDRIVFSYEGCVECGTCRVICPMDAITWNY 89

Query: 60 EPG 62
             
Sbjct: 90 PKS 92


>gi|291547967|emb|CBL21075.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus sp. SR1/5]
          Length = 307

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +  +E C  CK       CP       +  L I  + C  CG C  +CP  +I PD   
Sbjct: 167 PHFDSEACKGCKKCAIEATCPNKVAKVVDGKLHIDEELCRHCGRCVGKCPFHSI-PDGTY 225

Query: 62  GLELWL 67
           G ++++
Sbjct: 226 GFKIYI 231


>gi|291543380|emb|CBL16489.1| Fe-S-cluster-containing hydrogenase components 2 [Ruminococcus sp.
           18P13]
          Length = 149

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C  C+   CV+ C        +  + I+ D CI C  C   CP  AI P     ++ 
Sbjct: 57  SCRHCEDPLCVKSCLTGALSVKDGVIRINSDRCIHCYTCILACPYGAIVPSDNGAVKK 114



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG----VCEPECPVDAIKPDTEP 61
           ++ CI C    C+  CP       +N      + C++       C   CP  AI  +   
Sbjct: 86  SDRCIHC--YTCILACPYGAIVPSDNGAVKKCELCVNTATGLPNCVQGCPNGAIVFEDSE 143

Query: 62  G 62
            
Sbjct: 144 E 144


>gi|262406564|ref|ZP_06083113.1| ferredoxin-type protein [Bacteroides sp. 2_1_22]
 gi|262355267|gb|EEZ04358.1| ferredoxin-type protein [Bacteroides sp. 2_1_22]
          Length = 515

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 418 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 477

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 478 CPARPFRAIYIEGNPVQKE 496



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 392 DCTVCGD-----VCPNGAILPISVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 446

Query: 53  DAI 55
            A+
Sbjct: 447 QAV 449


>gi|304316330|ref|YP_003851475.1| electron transport complex, RnfABCDGE type subunit beta
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777832|gb|ADL68391.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 279

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T  CI CK   C   C  D  +  +N   I  ++C+ C  C  +CP D+I P
Sbjct: 216 VCTVGCIGCK--ACERACNYDAVHVIDNLAKIDYEKCVSCMACVEKCPTDSIYP 267



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 17  CVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C ++CP D  +  G+    +  D+C  CG+C   CP + I+
Sbjct: 152 CEKLCPFDAIHVIGDGVAVVDEDKCTGCGICVDACPKNIIE 192


>gi|254773429|ref|ZP_05214945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 330

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   ++
Sbjct: 133 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPFGVVE 184


>gi|227876559|ref|ZP_03994670.1| glutamate synthase (NADPH) small subunit [Mobiluncus mulieris ATCC
           35243]
 gi|269977760|ref|ZP_06184720.1| glutamate synthase [Mobiluncus mulieris 28-1]
 gi|227842873|gb|EEJ53071.1| glutamate synthase (NADPH) small subunit [Mobiluncus mulieris ATCC
           35243]
 gi|269934064|gb|EEZ90638.1| glutamate synthase [Mobiluncus mulieris 28-1]
          Length = 550

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C   +C  VCP +   +          D C  CG+C  ECP  AI
Sbjct: 497 NCFGCD--NCFGVCPDNAIKKIKPTQYVFKYDYCKGCGICAEECPCGAI 543


>gi|160943092|ref|ZP_02090329.1| hypothetical protein FAEPRAM212_00571 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445561|gb|EDP22564.1| hypothetical protein FAEPRAM212_00571 [Faecalibacterium prausnitzii
           M21/2]
          Length = 294

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T  C+ C    C + C +D    +  N       ECI CG+C   CP DAI+ 
Sbjct: 232 VDTHKCVSCG--ACAKACKMDVDITKTPNHA-----ECIRCGMCMKACPTDAIQY 279


>gi|156937723|ref|YP_001435519.1| flavoprotein [Ignicoccus hospitalis KIN4/I]
 gi|156566707|gb|ABU82112.1| flavoprotein [Ignicoccus hospitalis KIN4/I]
          Length = 215

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V  +C+ C+       CP      G+    I  + C+ C  C  +CP  AI   +E   E
Sbjct: 125 VINDCVGCEACPPQASCPTGAIV-GDRVRRILLERCVGCEACVGKCPFGAISCFSEAPFE 183


>gi|150026254|ref|YP_001297080.1| NADH dehydrogenase I, I subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|156633518|sp|A6H1Q5|NUOI_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|149772795|emb|CAL44279.1| NADH dehydrogenase I, I subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 183

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +            E  L           I+   CI CG+CE  
Sbjct: 78  ENCTACGL--CALSCPAEAITMKAAERKSNEKHLYREEKYAEIYEINMLRCIFCGLCEEA 135

Query: 50  CPVDAIK 56
           CP DAI 
Sbjct: 136 CPKDAIY 142


>gi|88603408|ref|YP_503586.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
 gi|88188870|gb|ABD41867.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
          Length = 289

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 4   VV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ T++CI C    C E C  D   +      + P  C  CG C   CP DA+
Sbjct: 63  VIDTKSCIGCG--ICAEACVYDAIQKVGEIYEVVPYRCEGCGTCTIVCPEDAV 113



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 27 YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + G +   I    CI CG+C   C  DAI+
Sbjct: 56 FRGMDGAVIDTKSCIGCGICAEACVYDAIQ 85


>gi|89894195|ref|YP_517682.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219668592|ref|YP_002459027.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89333643|dbj|BAE83238.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219538852|gb|ACL20591.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 190

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            Y ++  C  C+H  C E CP    Y  E +  + +  D+CI CG C   CP +  +
Sbjct: 60  AYWLSLGCNHCEHPKCAENCPTGAMYKREEDGIVLVDQDKCIGCGYCTWSCPYEVPQ 116


>gi|266659|sp|P29921|NQO9_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|150609|gb|AAA25593.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 163

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPAQAITIDAERREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118


>gi|329118908|ref|ZP_08247603.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464936|gb|EGF11226.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 159

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|323699778|ref|ZP_08111690.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio sp. ND132]
 gi|323459710|gb|EGB15575.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans ND132]
          Length = 141

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C E CP     +  +   I   + CI CG C   CPVDAI  D +
Sbjct: 54  CLACHPAPCAEACPTGSLSQRRDGGVIQKRNLCIRCGRCAEACPVDAIFLDHQ 106



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C E CPVD  +       ++P  CI CG C   CP D ++    P  E 
Sbjct: 86  CIRCG--RCAEACPVDAIFLDHQ---VNPYVCIHCGQCVAYCPHDCLEMVDLPAREE 137


>gi|323138153|ref|ZP_08073226.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242]
 gi|322396615|gb|EFX99143.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGYCQEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C +  C E CPVD   EG N 
Sbjct: 102 CIYCGY--CQEACPVDAIVEGPNQ 123



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          P+   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83


>gi|295106884|emb|CBL04427.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 261

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           C  C +  CVE CPV   +         +   +CI C  C   CP  
Sbjct: 110 CRQCPYPSCVEACPVGAMHADPATGVRLVDEGKCIGCERCVEACPFT 156


>gi|258622882|ref|ZP_05717898.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
 gi|258584821|gb|EEW09554.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
          Length = 553

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFIE 247



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|257792646|ref|YP_003183252.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488934|ref|ZP_07947464.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831070|ref|ZP_08164394.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|257476543|gb|ACV56863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912008|gb|EFV33587.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486991|gb|EGC89437.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 180

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            V   C+ C+   CV VCP    Y G + +  +    CI C  C   CP  
Sbjct: 53  TVPLQCMHCEDAPCVAVCPTGAAYIGADGIVGVDHGRCIGCLYCMAACPYQ 103


>gi|167623860|ref|YP_001674154.1| electron transport complex protein RnfB [Shewanella halifaxensis
           HAW-EB4]
 gi|167353882|gb|ABZ76495.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|73668425|ref|YP_304440.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str.
          Fusaro]
 gi|72395587|gb|AAZ69860.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str.
          Fusaro]
          Length = 303

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKPD 58
          E C  C    CV+VC     Y   + + I       CI CG C   CP  AI  +
Sbjct: 19 EKCKTCGL--CVKVCKGAPIYLENDKVRIDQTRYFGCIGCGHCVAVCPTGAIAVE 71


>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 624

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C  + C   CPV       +    I   +CI CG C   C   AI
Sbjct: 576 CKGC--SKCARSCPVGAITGKVKEPFVIDQSKCIKCGACIETCAFHAI 621



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    C  C  C   CPV AI
Sbjct: 571 IDASLCKGCSKCARSCPVGAI 591


>gi|312126857|ref|YP_003991731.1| hypothetical protein Calhy_0621 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776876|gb|ADQ06362.1| protein of unknown function DUF362 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 375

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNACPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIK 363


>gi|303327686|ref|ZP_07358126.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
          3_1_syn3]
 gi|302862047|gb|EFL84981.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
          3_1_syn3]
          Length = 418

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V  E CI C    C E CP    Y   G      +P+ CI+CG C   CP  A+  
Sbjct: 30 VDAEKCIGCD--TCQEYCPSGAIYGETGAAHEVAYPEACINCGQCLTHCPEFAVYE 83



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 22 PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          P     +   F+ +  ++CI C  C+  CP  AI  +T    E
Sbjct: 17 PQGADGDKMFFVQVDAEKCIGCDTCQEYCPSGAIYGETGAAHE 59


>gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 491

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +TY +    C  C    C  VCPV+C    +     I    CI CG C  +C  D+I
Sbjct: 434 LTYTIDPAKCTGCGL--CTRVCPVECISGTKKQPHTIDTTRCIKCGACYDKCKFDSI 488


>gi|255003195|ref|ZP_05278159.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Puerto Rico]
 gi|255004324|ref|ZP_05279125.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Virginia]
          Length = 156

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 55  ERCIACKL--CEAICPAQAITIEAAERGDGSRRTVRYDIDMTKCIYCGFCQEACPVDAI 111



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 96  CIYCGF--CQEACPVDAIVEGPNFEY 119



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          + CI C +CE  CP  AI  +
Sbjct: 55 ERCIACKLCEAICPAQAITIE 75


>gi|256078649|ref|XP_002575607.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238660849|emb|CAZ31840.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma
           mansoni]
          Length = 169

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 105 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 105 ERCIACKLCEAICPAQAITIEAEPRAD 131


>gi|238020501|ref|ZP_04600927.1| hypothetical protein GCWU000324_00383 [Kingella oralis ATCC 51147]
 gi|237867481|gb|EEP68487.1| hypothetical protein GCWU000324_00383 [Kingella oralis ATCC 51147]
          Length = 304

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      + EN +   H + CI CG C   CP +  + D +  
Sbjct: 97  DGCMHCADPGCLKACPSPGAIIQYENGIVDFHQENCIGCGYCIAGCPFNIPRMDKKEN 154


>gi|218888270|ref|YP_002437591.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759224|gb|ACL10123.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 177

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C  VCP D   + +  + +    C  C +C   CP  AI+
Sbjct: 64  CRQCADAPCARVCPTDALVQEDGVVVMRQQYCAACQLCVMACPYGAIE 111


>gi|213620710|ref|ZP_03373493.1| putative anaerobic dimethyl sulfoxide reductase, subunit B
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 131

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TY ++  C  C    CV  CP    ++ +    + +    C+ C  CE  CP  A + DT
Sbjct: 59  TYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGCRYCEMRCPYGAPQFDT 118

Query: 60  EPG 62
           +  
Sbjct: 119 QAN 121


>gi|126726681|ref|ZP_01742521.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Rhodobacterales
           bacterium HTCC2150]
 gi|126704010|gb|EBA03103.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Rhodobacterales
           bacterium HTCC2150]
          Length = 471

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 18/84 (21%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEPGLE 64
           +CI C    CV VCP+     EG+        ECI C +C   C  D I    D   GL 
Sbjct: 254 DCIDC--MACVNVCPMGIDIREGQQM------ECITCALCIDAC--DEIMDKIDRPRGLI 303

Query: 65  LWLKINSEYATQWPNITTKKESLP 88
            +L +  E     P     K   P
Sbjct: 304 DYLALADE-----PEERAGKPPKP 322


>gi|14521676|ref|NP_127152.1| formate dehydrogenase iron-sulfur subunit related protein
          [Pyrococcus abyssi GE5]
 gi|5458895|emb|CAB50382.1| Oxidoreductase iron-sulfur protein [Pyrococcus abyssi GE5]
          Length = 164

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +  NC  C+   C+EVCP    Y   +N +A  P +CI C +C   CP    K D 
Sbjct: 42 IPFNCRHCERAPCLEVCPTGALYRDCDNAVAFDPLKCIGCLMCAVACPFGVPKLDE 97


>gi|16760455|ref|NP_456072.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141785|ref|NP_805127.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413573|ref|YP_150648.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180046|ref|YP_216463.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167551571|ref|ZP_02345325.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168229833|ref|ZP_02654891.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235531|ref|ZP_02660589.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168819209|ref|ZP_02831209.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194470589|ref|ZP_03076573.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194738361|ref|YP_002114471.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250299|ref|YP_002146587.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362497|ref|YP_002142134.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200390591|ref|ZP_03217202.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927482|ref|ZP_03218683.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352829|ref|YP_002226630.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857038|ref|YP_002243689.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051628|ref|ZP_03344506.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418458|ref|ZP_03351524.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425980|ref|ZP_03358730.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213609896|ref|ZP_03369722.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213649167|ref|ZP_03379220.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855036|ref|ZP_03383276.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584033|ref|YP_002637831.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911690|ref|ZP_04655527.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824890|ref|ZP_06544311.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|24638184|sp|Q8Z6R0|RNFB_SALTI RecName: Full=Electron transport complex protein rnfB
 gi|75505763|sp|Q57PH9|RNFB_SALCH RecName: Full=Electron transport complex protein rnfB
 gi|81677938|sp|Q5PIC0|RNFB_SALPA RecName: Full=Electron transport complex protein rnfB
 gi|226735425|sp|B5F6I9|RNFB_SALA4 RecName: Full=Electron transport complex protein rnfB
 gi|226735427|sp|B5QV01|RNFB_SALEP RecName: Full=Electron transport complex protein rnfB
 gi|226735428|sp|B5RAK1|RNFB_SALG2 RecName: Full=Electron transport complex protein rnfB
 gi|226735431|sp|B5BKB1|RNFB_SALPK RecName: Full=Electron transport complex protein rnfB
 gi|226735432|sp|B4TV18|RNFB_SALSV RecName: Full=Electron transport complex protein rnfB
 gi|254807926|sp|C0Q507|RNFB_SALPC RecName: Full=Electron transport complex protein rnfB
 gi|25316774|pir||AD0692 probable ferredoxin-like protein, cytoplasmic membrane STY1664
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16502751|emb|CAD01909.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29137413|gb|AAO68976.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56127830|gb|AAV77336.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62127679|gb|AAX65382.1| putative alternative beta subunit of Na+-transporting
           NADH:ubiquinone oxidoreductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194456953|gb|EDX45792.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194713863|gb|ACF93084.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197093974|emb|CAR59470.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214002|gb|ACH51399.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197290969|gb|EDY30322.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199603036|gb|EDZ01582.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204322824|gb|EDZ08020.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205272610|emb|CAR37519.1| putative electron transport complex protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323557|gb|EDZ11396.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205335259|gb|EDZ22023.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343637|gb|EDZ30401.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206708841|emb|CAR33171.1| Electron transport complex protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468560|gb|ACN46390.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320086066|emb|CBY95840.1| Electron transport complex protein rnfB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322616075|gb|EFY12991.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620524|gb|EFY17386.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622925|gb|EFY19767.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628768|gb|EFY25553.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631478|gb|EFY28236.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638813|gb|EFY35508.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641120|gb|EFY37763.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646613|gb|EFY43121.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650863|gb|EFY47254.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654537|gb|EFY50858.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658696|gb|EFY54954.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665218|gb|EFY61406.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667963|gb|EFY64123.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671625|gb|EFY67746.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677329|gb|EFY73393.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680008|gb|EFY76047.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685563|gb|EFY81559.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714516|gb|EFZ06087.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323194066|gb|EFZ79265.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198189|gb|EFZ83298.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202875|gb|EFZ87910.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205624|gb|EFZ90587.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211027|gb|EFZ95886.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217294|gb|EGA02014.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221948|gb|EGA06339.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323232169|gb|EGA16275.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234340|gb|EGA18427.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237791|gb|EGA21850.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242645|gb|EGA26666.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247768|gb|EGA31708.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254487|gb|EGA38299.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254811|gb|EGA38609.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323266728|gb|EGA50215.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268766|gb|EGA52225.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326627900|gb|EGE34243.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 192

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIE 163


>gi|84516725|ref|ZP_01004083.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53]
 gi|84509193|gb|EAQ05652.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53]
          Length = 166

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 65  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 121



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 65 ERCIACKLCEAVCPAQAITIDAEPRDD 91



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 106 CIYCGF--CQEACPVDAIVEGPNF 127


>gi|110633384|ref|YP_673592.1| NADH dehydrogenase subunit I [Mesorhizobium sp. BNC1]
 gi|122966121|sp|Q11JJ8|NUOI_MESSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110284368|gb|ABG62427.1| NADH dehydrogenase subunit I [Chelativorans sp. BNC1]
          Length = 163

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118

Query: 56  ------KPDTEPGLELWLKINSEYA 74
                 +  TE   EL+   +   A
Sbjct: 119 VEGPNFEFATETREELYYDKDKLLA 143


>gi|328473707|gb|EGF44542.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 10329]
          Length = 553

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGQSPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|323698184|ref|ZP_08110096.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323458116|gb|EGB13981.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 776

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 8   NCILCKHTD-CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
           +C  C+    C  +CP +        +G     + PD+CI CG C   CP
Sbjct: 714 SCGSCRDCYICDTLCPQNAIKRNELPDGGFERVVDPDKCIACGFCADACP 763


>gi|320156338|ref|YP_004188717.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
 gi|319931650|gb|ADV86514.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP          +  + + I+P  C   G C   CP +AI
Sbjct: 172 TDLCAHSSRGVKGCERCVDACPAGALTSQGSDKTGHHIEINPYLCQGVGTCATSCPTEAI 231

Query: 56  KPDTEPGLE--LWLK 68
                   E   +++
Sbjct: 232 HYALPNPQETQKFIE 246



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T  C LC    CV VCP    +       L     +C+ CG+C   CP
Sbjct: 416 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACP 461


>gi|306817518|ref|ZP_07451262.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           ATCC 35239]
 gi|307699830|ref|ZP_07636881.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           FB024-16]
 gi|304649742|gb|EFM47023.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           ATCC 35239]
 gi|307614868|gb|EFN94086.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           FB024-16]
          Length = 550

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           NC  C   +C  VCP +   +          D C  CG+C  ECP  AI    E  
Sbjct: 497 NCFGCD--NCFGVCPDNAIKKIKPTQYVFKYDYCKGCGICAEECPCGAIDMVLEAN 550


>gi|304311502|ref|YP_003811100.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
 gi|301797235|emb|CBL45455.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
          Length = 185

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CP  C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 63  ERCVACNL--CAAACPAQCISLQKAERDDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 120

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 121 LTPDFEMAEF 130


>gi|295101884|emb|CBK99429.1| Uncharacterized Fe-S center protein [Faecalibacterium prausnitzii
           L2-6]
          Length = 374

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  + C  C    C + C  D   Y  +N   I  D+C  CG C   C  DAI    +  
Sbjct: 192 VQEDLCRGC--HRCAKECGSDAIRYNEKNKAVIDQDKCKGCGRCIGACSFDAIYALCDSA 249

Query: 63  LELWLKINSEYAT 75
            E+  +  +EYA 
Sbjct: 250 NEMLDRKMAEYAA 262


>gi|228470926|ref|ZP_04055771.1| f420H2:quinone oxidoreductase [Porphyromonas uenonis 60-3]
 gi|228307323|gb|EEK16337.1| f420H2:quinone oxidoreductase [Porphyromonas uenonis 60-3]
          Length = 394

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 9  CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          C  C+   C +VCP +C       EG  +  +  + CI+C  CE  CP 
Sbjct: 10 CCGCE--ACRQVCPKECIRLERDEEGFGYPVVDLERCIECHKCERVCPF 56


>gi|237653622|ref|YP_002889936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237624869|gb|ACR01559.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 216

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C  VCP     +  + L  I  D CI C  C   CP +A
Sbjct: 58  CQHCDEPPCETVCPTTATKKRADGLVTIDYDLCIGCAYCSVACPYNA 104


>gi|218705129|ref|YP_002412648.1| electron transport complex protein RnfB [Escherichia coli UMN026]
 gi|293405127|ref|ZP_06649119.1| electron transport complex protein RnfB [Escherichia coli FVEC1412]
 gi|293409939|ref|ZP_06653515.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298380775|ref|ZP_06990374.1| electron transport complex protein rnfB [Escherichia coli FVEC1302]
 gi|300901565|ref|ZP_07119634.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 198-1]
 gi|301026784|ref|ZP_07190188.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 69-1]
 gi|331663100|ref|ZP_08364010.1| electron transport complex protein RnfB [Escherichia coli TA143]
 gi|226735416|sp|B7NB82|RNFB_ECOLU RecName: Full=Electron transport complex protein rnfB
 gi|218432226|emb|CAR13116.1| putative iron-sulfur protein [Escherichia coli UMN026]
 gi|291427335|gb|EFF00362.1| electron transport complex protein RnfB [Escherichia coli FVEC1412]
 gi|291470407|gb|EFF12891.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278217|gb|EFI19731.1| electron transport complex protein rnfB [Escherichia coli FVEC1302]
 gi|300355032|gb|EFJ70902.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 198-1]
 gi|300395322|gb|EFJ78860.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 69-1]
 gi|323968396|gb|EGB63802.1| electron transporter [Escherichia coli M863]
 gi|327252743|gb|EGE64397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli STEC_7v]
 gi|331058899|gb|EGI30876.1| electron transport complex protein RnfB [Escherichia coli TA143]
          Length = 192

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--KPD 58
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP   I  +P 
Sbjct: 110 AFIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPV 167

Query: 59  TEPGLELWLKIN 70
            E        +N
Sbjct: 168 AETPDSWKWDLN 179


>gi|153005757|ref|YP_001380082.1| electron-transferring-flavoprotein dehydrogenase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029330|gb|ABS27098.1| Electron-transferring-flavoprotein dehydrogenase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 606

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPEC 50
           T+   E C  C    CVE+C  +    GE+ +     ++C+ CG C   C
Sbjct: 531 TFRSAETCRACGRRACVEICSAEALRPGEDGVPGFDREKCVHCGACLWSC 580


>gi|111018602|ref|YP_701574.1| Fe-S ferredoxin-type protein [Rhodococcus jostii RHA1]
 gi|110818132|gb|ABG93416.1| probable Fe-S ferredoxin-type protein [Rhodococcus jostii RHA1]
          Length = 110

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
          VV + C+ C    C++VCP D F  G + +    H ++C  C +CE  CP DA+ 
Sbjct: 5  VVADRCVQCD--ICIKVCPTDVFRRGTDGVPVVAHQEDCQTCFMCEANCPTDALY 57


>gi|33240385|ref|NP_875327.1| ferredoxin [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237912|gb|AAP99979.1| Ferredoxin [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 73

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE-------GENFLAIHPDECIDCGVCEPECPV- 52
          M + +    +    ++CV+ CPVDC  +       G  +  I    CIDCGVC   CP+ 
Sbjct: 1  MPHSINSE-VCEGISECVKACPVDCIKQASGTNKKGTTYYFIDFSTCIDCGVCLSVCPIK 59

Query: 53 DAIKPDTEPGLEL 65
          +A+  +  P L+ 
Sbjct: 60 NAVVSEERPDLQQ 72


>gi|29346027|ref|NP_809530.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568565|ref|ZP_04845976.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|298385330|ref|ZP_06994888.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 1_1_14]
 gi|29337921|gb|AAO75724.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport
           complex protein rnfB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251842638|gb|EES70718.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|298261471|gb|EFI04337.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 1_1_14]
          Length = 293

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEP 61
           T +CI C    CV+ CP +      N   I P++C  C  C   CP + I     P  +P
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPNKCKSCRKCVEVCPQNTIIELNFPPRKP 275

Query: 62  GLEL 65
             E 
Sbjct: 276 KAEE 279



 Score = 40.5 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E CI C    C+  C +D      +    I  ++CI CGVC   CPV+A+
Sbjct: 532 EKCINCGL--CLRKCRLDAIIRENHGAHRIQTEKCIQCGVCLDACPVNAV 579


>gi|323978823|gb|EGB73904.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|323180986|gb|EFZ66524.1| hypothetical protein ECOK1180_0282 [Escherichia coli 1180]
          Length = 184

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|326424121|ref|NP_761830.2| NrfC protein [Vibrio vulnificus CMCP6]
 gi|319999504|gb|AAO11357.2| NrfC protein [Vibrio vulnificus CMCP6]
          Length = 226

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 96  SCQHCENPPCVYVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLAACPYQ 143


>gi|317486042|ref|ZP_07944896.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922720|gb|EFV43952.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 653

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C++VCP     E    GE         C  CG+C   CP  AI+       +
Sbjct: 585 CVGCG--KCIKVCPFQAIVEKEIRGEKKAQTIEAVCQGCGLCTATCPQGAIQLSHFTDNQ 642

Query: 65  LWLKINS 71
           +  ++++
Sbjct: 643 ILAEVDA 649



 Score = 40.9 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 27/86 (31%), Gaps = 26/86 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPV----DCFYE---------------GENFLAIHPDECID 42
           TYV    C  C    C++ CP     D F E                     I+ + C  
Sbjct: 235 TYVDWSKCTGCG--ACMDKCPAKKTPDKFNEFVGPTTAINIPFPQAIPKKATINAEFCRK 292

Query: 43  -----CGVCEPECPVDAIKPDTEPGL 63
                CGVC   CP  AI  + +   
Sbjct: 293 LTSGKCGVCAKVCPTGAINYEMKDEE 318



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 14/57 (24%)

Query: 34  AIHPDECIDCGVCEPECPV--------------DAIKPDTEPGLELWLKINSEYATQ 76
            +   +C  CG C  +CP                AI       +     IN+E+  +
Sbjct: 236 YVDWSKCTGCGACMDKCPAKKTPDKFNEFVGPTTAINIPFPQAIPKKATINAEFCRK 292



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
                +    C+ CG C   CP  AI
Sbjct: 575 PQISVVDIKRCVGCGKCIKVCPFQAI 600


>gi|297617551|ref|YP_003702710.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145388|gb|ADI02145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 582

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M YV  E C  C    C+++ C    + E E    I+P+ C+ CG+C   C +DAI
Sbjct: 523 MYYVDEEACKGC--RLCIKIGCTGIYWIEEERIARINPNLCVGCGLCAQICKLDAI 576


>gi|317152091|ref|YP_004120139.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942342|gb|ADU61393.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 256

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVD 53
           C  CK+  CV VCP    Y+  + +    D   CI C  C   CP  
Sbjct: 117 CNHCKNPPCVRVCPTKATYKRPDGIV-DMDYHRCIGCRYCMAGCPYG 162


>gi|262406412|ref|ZP_06082961.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|294643290|ref|ZP_06721116.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|294806484|ref|ZP_06765325.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b]
 gi|262355115|gb|EEZ04206.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|292641413|gb|EFF59605.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|294446347|gb|EFG14973.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b]
          Length = 317

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP ++I
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNSI 265



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|288932414|ref|YP_003436474.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894662|gb|ADC66199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 320

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+   CV+VCP    + E +  + I  + CI C  C   CP  A + +         
Sbjct: 176 CQQCEKPPCVKVCPTRATWKEPDGIIVIDYNWCIGCRYCMAACPYWARRFNWSWPYIPKE 235

Query: 68  KIN 70
           +IN
Sbjct: 236 EIN 238


>gi|251789021|ref|YP_003003742.1| NADH dehydrogenase subunit I [Dickeya zeae Ech1591]
 gi|271501261|ref|YP_003334286.1| NADH-quinone oxidoreductase subunit I [Dickeya dadantii Ech586]
 gi|247537642|gb|ACT06263.1| NADH-quinone oxidoreductase, chain I [Dickeya zeae Ech1591]
 gi|270344816|gb|ACZ77581.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech586]
          Length = 180

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|170691834|ref|ZP_02882998.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           graminis C4D1M]
 gi|170143118|gb|EDT11282.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           graminis C4D1M]
          Length = 344

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD----TEPGL 63
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I          G 
Sbjct: 128 CIGC--TLCMQACPVDAIVGAPKHMHTVVAELCTGCDLCVPPCPVDCISMQPVTGEATGW 185

Query: 64  ELWLKINSEYATQ 76
           + W +  ++ A +
Sbjct: 186 DAWSQPKADAARE 198



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 122 VIDEHICIGCTLCMQACPVDAI 143


>gi|119872139|ref|YP_930146.1| putative ATPase RIL [Pyrobaculum islandicum DSM 4184]
 gi|119673547|gb|ABL87803.1| ABC transporter related [Pyrobaculum islandicum DSM 4184]
          Length = 590

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 7  ENC--ILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + C    C   +CV+ CPV+         E      I    CI CG+C  +CP  AI   
Sbjct: 10 DACQPRKCG-QECVKYCPVNKSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFQAITIV 68

Query: 59 TEPGL 63
            P  
Sbjct: 69 NLPDE 73


>gi|222054147|ref|YP_002536509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563436|gb|ACM19408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 197

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           +C  C   DC+  CP            + +    C  C +C   CP DAI
Sbjct: 57  SCRHCDPADCLNACPSGAICRDPESGAVVLDASLCKACAMCAMVCPFDAI 106


>gi|78185937|ref|YP_373980.1| polysulfide reductase, subunit B, putative [Chlorobium luteolum DSM
           273]
 gi|78165839|gb|ABB22937.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium luteolum DSM 273]
          Length = 243

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C    CV  CP D  +  ++ +  I    CI C  C   CP  
Sbjct: 105 CNHCAEPSCVRACPTDSIFRRKDGIVAIDYHRCIGCRSCMLACPYG 150


>gi|37523338|ref|NP_926715.1| hypothetical protein gll3769 [Gloeobacter violaceus PCC 7421]
 gi|35214342|dbj|BAC91710.1| gll3769 [Gloeobacter violaceus PCC 7421]
          Length = 351

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            +   E C       C+ +CPVD    G     I    C  CG C P CP+  I+ 
Sbjct: 94  AHFDAERCPSDCPRPCLRICPVDAIAAGG----IEALRCYGCGRCAPVCPLGLIEF 145


>gi|315452560|ref|YP_004072830.1| iron-sulfur cluster-binding domain-containing protein [Helicobacter
           felis ATCC 49179]
 gi|315131612|emb|CBY82240.1| iron-sulfur cluster-binding domain protein [Helicobacter felis ATCC
           49179]
          Length = 468

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 23/95 (24%)

Query: 17  CVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDAIKP----- 57
           C EVCP                   E    L I    CIDCG C   CP  ++       
Sbjct: 117 CSEVCPTQAISKLDPQIAREKDLECEDNRHLVIDHQSCIDCGKCIAVCPSGSLSYSSFNL 176

Query: 58  ----DTEPGLELWLKINSEYATQWPNITTKKESLP 88
               +       ++ +  +   + PN   KKE LP
Sbjct: 177 ECMQEVAKLYRGYIPLLIDCKAELPNTPLKKEVLP 211



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECP 51
           + +NC LC    CV  C         N   L  +P  C  CG CE  CP
Sbjct: 333 IKDNCTLCL--SCVGACNTGALSVDGNAYTLLFNPSLCTTCGYCEATCP 379


>gi|311104715|ref|YP_003977568.1| electron transport complex, RnfABCDGE type subunit B [Achromobacter
           xylosoxidans A8]
 gi|310759404|gb|ADP14853.1| electron transport complex, RnfABCDGE type, B subunit
           [Achromobacter xylosoxidans A8]
          Length = 214

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C++ CPVD        +  +  D C  C +C   CPVD I+    P    W 
Sbjct: 86  CIGC--TLCIQACPVDAIVGANKHMHTVLADWCTGCDLCVAPCPVDCIQ--MVPAGRAWS 141

Query: 68  KINSEYATQ 76
             ++  + Q
Sbjct: 142 AQDAAISRQ 150



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 81  IDEAHCIGCTLCIQACPVDAI 101


>gi|291614139|ref|YP_003524296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584251|gb|ADE11909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 238

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    CV+VCP    F   +  + +    CI C  C   CP  A     EP
Sbjct: 104 CQHCAEPPCVDVCPTAASFKRADGIVLVDRHRCIGCRYCMMACPYKARSFVHEP 157


>gi|253999624|ref|YP_003051687.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methylovorus sp. SIP3-4]
 gi|253986303|gb|ACT51160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylovorus sp. SIP3-4]
          Length = 83

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP     +G     I+P  C +C        C+  CPV  
Sbjct: 1  MALMITDECINCDV--CEPACPNGAISQGAEIYVINPALCTECVGHFDKPQCQDVCPVSC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPLDPD 64


>gi|225175901|ref|ZP_03729893.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1]
 gi|225168489|gb|EEG77291.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1]
          Length = 315

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           YVV + C  C   +CVE C        +    I    CI CG C   CP   I+
Sbjct: 263 YVV-KFCKGCG--NCVESCEQGAISMVDEKAYIEHSNCILCGYCRKSCPHSMIR 313


>gi|117625117|ref|YP_854105.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli APEC O1]
 gi|218559878|ref|YP_002392791.1| oxidoreductase, 4Fe-4S ferredoxin-type subunit [Escherichia coli
           S88]
 gi|227888433|ref|ZP_04006238.1| 4Fe-4S binding protein [Escherichia coli 83972]
 gi|300980322|ref|ZP_07174976.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301049332|ref|ZP_07196302.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|306812213|ref|ZP_07446411.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli NC101]
 gi|115514241|gb|ABJ02316.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli APEC O1]
 gi|218366647|emb|CAR04401.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli S88]
 gi|227834702|gb|EEJ45168.1| 4Fe-4S binding protein [Escherichia coli 83972]
 gi|281179891|dbj|BAI56221.1| putative oxidoreductase [Escherichia coli SE15]
 gi|294493750|gb|ADE92506.1| 4Fe-4S binding protein [Escherichia coli IHE3034]
 gi|300298931|gb|EFJ55316.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300409330|gb|EFJ92868.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|305854251|gb|EFM54689.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli NC101]
 gi|307554862|gb|ADN47637.1| putative electron transport protein YgfS [Escherichia coli ABU
           83972]
 gi|307625542|gb|ADN69846.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli UM146]
 gi|315289453|gb|EFU48848.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|315293883|gb|EFU53235.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|323951676|gb|EGB47551.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957394|gb|EGB53116.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|157162346|ref|YP_001459664.1| 4Fe-4S binding protein [Escherichia coli HS]
 gi|188491838|ref|ZP_02999108.1| 4Fe-4S binding protein [Escherichia coli 53638]
 gi|194436779|ref|ZP_03068879.1| 4Fe-4S binding protein [Escherichia coli 101-1]
 gi|253772274|ref|YP_003035105.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|293412244|ref|ZP_06654967.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|297516963|ref|ZP_06935349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli OP50]
 gi|300925135|ref|ZP_07141049.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|312972874|ref|ZP_07787047.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|157068026|gb|ABV07281.1| 4Fe-4S binding protein [Escherichia coli HS]
 gi|188487037|gb|EDU62140.1| 4Fe-4S binding protein [Escherichia coli 53638]
 gi|194424261|gb|EDX40248.1| 4Fe-4S binding protein [Escherichia coli 101-1]
 gi|242378418|emb|CAQ33197.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli BL21(DE3)]
 gi|253323318|gb|ACT27920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|291469015|gb|EFF11506.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|300418737|gb|EFK02048.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|310332816|gb|EFQ00030.1| hydrogenase-4 component A [Escherichia coli 1827-70]
 gi|323960818|gb|EGB56439.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971677|gb|EGB66906.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|332344780|gb|AEE58114.1| hydrogenase-4 component A [Escherichia coli UMNK88]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|193070563|ref|ZP_03051502.1| 4Fe-4S binding protein [Escherichia coli E110019]
 gi|192956146|gb|EDV86610.1| 4Fe-4S binding protein [Escherichia coli E110019]
          Length = 162

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|323702340|ref|ZP_08114005.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323532646|gb|EGB22520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 206

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +  V  E C  C    C  VCPV           +  + C  C  CE  CP  AI
Sbjct: 7  LAVVDNEKCRGC--RTCERVCPVLAIKMENRKAVVDNERCRGCANCEQRCPYYAI 59



 Score = 33.6 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPD 58
           +  ++C  C  CE  CPV AIK +
Sbjct: 9  VVDNEKCRGCRTCERVCPVLAIKME 33


>gi|269140136|ref|YP_003296837.1| formate-dependent nitrite reductase; Fe-S center [Edwardsiella
           tarda EIB202]
 gi|267985797|gb|ACY85626.1| formate-dependent nitrite reductase; Fe-S center [Edwardsiella
           tarda EIB202]
 gi|304559970|gb|ADM42634.1| NrfC [Edwardsiella tarda FL6-60]
          Length = 223

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C    CV  CP    F +  + +  ++P+ C+ C  C   CP 
Sbjct: 91  SCQHCDDAPCVNACPTGASFRDAASGIVDVNPELCVGCQYCIAACPY 137


>gi|254439108|ref|ZP_05052602.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter
           antarcticus 307]
 gi|198254554|gb|EDY78868.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter
           antarcticus 307]
          Length = 168

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVDAI
Sbjct: 67  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 123



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 67 ERCIACKLCEAVCPAQAITIDAEPRDD 93



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 108 CIYCGF--CEEACPVDAIVEGPNF 129


>gi|192361907|ref|YP_001983090.1| iron-sulfur cluster-binding protein [Cellvibrio japonicus Ueda107]
 gi|190688072|gb|ACE85750.1| iron-sulfur cluster-binding protein [Cellvibrio japonicus Ueda107]
          Length = 470

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCPVD              ECIDCG+C   C
Sbjct: 270 DCIDCSW--CVQVCPVDIDIRDGLQA-----ECIDCGLCVDAC 305


>gi|168463130|ref|ZP_02697061.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634204|gb|EDX52556.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 192

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIIGATRAMHTVMSDLCTGCNLCVDPCPTHCIE 163


>gi|164687856|ref|ZP_02211884.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM
           16795]
 gi|164603131|gb|EDQ96596.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM
           16795]
          Length = 333

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ CK   C +VCP             ++I   +CI C  C   CP  AI+ + +   ++
Sbjct: 243 CVGCKV--CADVCPKKVIKADLSDRRKVSIDESKCIGCTACARTCPFGAIEGEKKQPHKV 300

Query: 66  WLK 68
            L+
Sbjct: 301 DLE 303



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI CK   C + CPV       N   I   +C+ C VC   CP   IK D 
Sbjct: 214 CIGCK--KCEKSCPVGAITVENNLATIDYSKCVGCKVCADVCPKKVIKADL 262



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CV VC        +    +  D+C+ CG C   CP   I+
Sbjct: 146 CVSVCAFGALSIVDGVAVVDEDKCVLCGKCIDTCPKGLIQ 185



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C   CP     EGE      +  ++C  C +C  +C  DAIK
Sbjct: 275 CIGC--TACARTCPFGAI-EGEKKQPHKVDLEKCKGCHLCMKKCKKDAIK 321


>gi|254975776|ref|ZP_05272248.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-66c26]
 gi|255093163|ref|ZP_05322641.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CIP 107932]
 gi|255314905|ref|ZP_05356488.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-76w55]
 gi|255517579|ref|ZP_05385255.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-97b34]
 gi|255650690|ref|ZP_05397592.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-37x79]
 gi|260683777|ref|YP_003215062.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CD196]
 gi|260687437|ref|YP_003218571.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           R20291]
 gi|306520615|ref|ZP_07406962.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           QCD-32g58]
 gi|260209940|emb|CBA63916.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           CD196]
 gi|260213454|emb|CBE05132.1| putative iron-sulfur subunit of hydrogenase [Clostridium difficile
           R20291]
          Length = 140

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI C    C+  CP +CF + E F+ +    CI C +CE  C   A
Sbjct: 54  ACIHCNEPKCLGACPKNCFKKEEGFVVLDNQNCIGCKLCEKACEYGA 100


>gi|90022063|ref|YP_527890.1| putative ferredoxin [Saccharophagus degradans 2-40]
 gi|89951663|gb|ABD81678.1| 4Fe-4S ferredoxin, iron-sulfur binding [Saccharophagus degradans
           2-40]
          Length = 484

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 18/67 (26%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +CI C    CV+VCPVD    +G  F      ECI+CG+C   C         P   I+ 
Sbjct: 279 DCIDCSW--CVQVCPVDIDIRDGLQF------ECINCGLCVDACNAVMDKMEYPRGLIRF 330

Query: 58  DTEPGLE 64
            +E  LE
Sbjct: 331 ASEDELE 337


>gi|77463679|ref|YP_353183.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1]
 gi|221639523|ref|YP_002525785.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131]
 gi|110287770|sp|Q3J1Q2|NUOI2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|77388097|gb|ABA79282.1| NADH-quinone oxidoreductase, chain I, ferredoxin [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160304|gb|ACM01284.1| NADH-quinone oxidoreductase subunit I 2 [Rhodobacter sphaeroides
           KD131]
          Length = 164

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E  +         I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAACPVDCIDVVKAETPDGRWYPESFRINFARCIFCGYCEEACPTSAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 107 LTPDVELADY 116


>gi|238787508|ref|ZP_04631306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii ATCC
           33641]
 gi|238724295|gb|EEQ15937.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia frederiksenii ATCC
           33641]
          Length = 173

 Score = 50.5 bits (120), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP      G++ + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCENSCPNGAIVTGDHGVQVMASRCIGCKTCMLVCPFGA 103


>gi|307131807|ref|YP_003883823.1| NADH:ubiquinone oxidoreductase subunit I [Dickeya dadantii 3937]
 gi|306529336|gb|ADM99266.1| NADH:ubiquinone oxidoreductase, chain I [Dickeya dadantii 3937]
          Length = 180

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEMKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|296102656|ref|YP_003612802.1| electron transport complex protein RnfB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057115|gb|ADF61853.1| electron transport complex protein RnfB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 192

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ E NCI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 111 VIDEANCIGC--TKCIQACPVDAIVGATRAMHTVVADLCTGCNLCVAPCPTQCIE 163


>gi|289422180|ref|ZP_06424037.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289157406|gb|EFD06014.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 595

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI CK   C +  CP   F       +I  ++C+ C VC   CPV AI
Sbjct: 540 VDQDKCIGCK--KCTKTGCPAISFKTDIKKSSIDINKCVGCSVCAQVCPVGAI 590


>gi|253997114|ref|YP_003049178.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methylotenera mobilis JLW8]
 gi|253983793|gb|ACT48651.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylotenera mobilis JLW8]
          Length = 83

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y+GE    I+PD C +C        C+  CP+D 
Sbjct: 1  MALMITDECINCDV--CEPACPNTAIYQGEEIYEINPDLCTECVGHYDKPQCQQVCPIDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPRDPD 64


>gi|227829891|ref|YP_002831670.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus L.S.2.15]
 gi|227456338|gb|ACP35025.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus L.S.2.15]
          Length = 612

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C        CP       +    I    CI CG C P CP  AI       LE W
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAISLKGN-KLEKW 606

Query: 67  LKI 69
            ++
Sbjct: 607 DEL 609


>gi|197105259|ref|YP_002130636.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1]
 gi|196478679|gb|ACG78207.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1]
          Length = 163

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 62 ERCIACKLCEAVCPAQAITIEAEPRAD 88


>gi|145634223|ref|ZP_01789934.1| uridylate kinase [Haemophilus influenzae PittAA]
 gi|145268667|gb|EDK08660.1| uridylate kinase [Haemophilus influenzae PittAA]
          Length = 225

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D CI C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPY 139


>gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
          Length = 490

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           +TY +    C  C    C  VCPV+C    +     I    CI CG C  +C  D+I
Sbjct: 433 LTYTIDPAKCTGCGL--CTRVCPVECISGTKKQPHTIDTTRCIKCGACYDKCKFDSI 487


>gi|148265397|ref|YP_001232103.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146398897|gb|ABQ27530.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Geobacter uraniireducens Rf4]
          Length = 258

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C+ C    C++VCP     Y  +  +   + ++CI C  C   CP +  +  T+ 
Sbjct: 74  ERCMHCGDAGCMKVCPSPGALYRTKEGIVAFNREKCISCKYCVSACPFNIPRYGTDD 130



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 14/66 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVDAIKP 57
           E CI CK+  CV  CP +    G +       +C  CG          C   CP  +I+ 
Sbjct: 107 EKCISCKY--CVSACPFNIPRYGTDDKV---SKCNLCGDRVAGGMPPACAKACPTQSIQF 161

Query: 58  DTEPGL 63
                L
Sbjct: 162 GNRAEL 167


>gi|110643034|ref|YP_670764.1| putative electron transport protein YgfS [Escherichia coli 536]
 gi|191173216|ref|ZP_03034747.1| 4Fe-4S binding protein [Escherichia coli F11]
 gi|300995684|ref|ZP_07181212.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|331659014|ref|ZP_08359956.1| putative electron transport protein YgfS [Escherichia coli TA206]
 gi|110344626|gb|ABG70863.1| putative electron transport protein YgfS [Escherichia coli 536]
 gi|190906467|gb|EDV66075.1| 4Fe-4S binding protein [Escherichia coli F11]
 gi|300304792|gb|EFJ59312.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|315295672|gb|EFU54992.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|324011766|gb|EGB80985.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
 gi|331053596|gb|EGI25625.1| putative electron transport protein YgfS [Escherichia coli TA206]
          Length = 162

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|332795704|ref|YP_004457204.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332693439|gb|AEE92906.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidianus
           hospitalis W1]
          Length = 653

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 7   ENCILCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  CK   C + CPV      D   +G      +   CI CG C   CP +
Sbjct: 586 DTCKSCKTIQCEDACPVKIPIRTDVISKG----YTNRISCIGCGDCVEACPYN 634


>gi|331648630|ref|ZP_08349718.1| putative electron transport protein YgfS [Escherichia coli M605]
 gi|331042377|gb|EGI14519.1| putative electron transport protein YgfS [Escherichia coli M605]
          Length = 163

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|323978232|gb|EGB73318.1| electron transporter [Escherichia coli TW10509]
          Length = 192

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--KPD 58
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP   I  +P 
Sbjct: 110 AFIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPV 167

Query: 59  TEPGLELWLKIN 70
            E        +N
Sbjct: 168 AETPDSWKWDLN 179


>gi|251791854|ref|YP_003006574.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533241|gb|ACS96487.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           aphrophilus NJ8700]
          Length = 225

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP            + +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDPDTGIVDVHKDLCVGCQYCVAVCPY 139


>gi|261379572|ref|ZP_05984145.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703]
 gi|269214461|ref|ZP_05986605.2| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970]
 gi|296313738|ref|ZP_06863679.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768]
 gi|313669276|ref|YP_004049560.1| NADH dehydrogenase I chain I [Neisseria lactamica ST-640]
 gi|261391783|emb|CAX49238.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I;
           NDH-1, chain I) [Neisseria meningitidis 8013]
 gi|269209739|gb|EEZ76194.1| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970]
 gi|284798046|gb|EFC53393.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703]
 gi|296839661|gb|EFH23599.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768]
 gi|308388470|gb|ADO30790.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha710]
 gi|313006738|emb|CBN88208.1| NADH dehydrogenase I chain I [Neisseria lactamica 020-06]
 gi|325130978|gb|EGC53705.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           OX99.30304]
          Length = 159

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|224368543|ref|YP_002602706.1| HdrA3 [Desulfobacterium autotrophicum HRM2]
 gi|223691259|gb|ACN14542.1| HdrA3 [Desulfobacterium autotrophicum HRM2]
          Length = 418

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-----ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CILC    C +VCP +               +  + C  CG C   CP  AI  + +   
Sbjct: 119 CILCG--RCEKVCPENAVSPTICHALPRTFLVDINACTGCGKCVAVCPTHAIDLERKQDR 176

Query: 64  ELWLKINSEYATQW 77
              L  N  +AT +
Sbjct: 177 IKILAENIIWATGF 190



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 35  IHPDECIDCGVCEPECPVDAIKP 57
           I P  CI CG CE  CP +A+ P
Sbjct: 114 IDPGRCILCGRCEKVCPENAVSP 136


>gi|269863882|ref|XP_002651380.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220064638|gb|EED42677.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 288

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 4  VVTENCI--LCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C    C   +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 16 VNEELCKPDKC-AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|192293097|ref|YP_001993702.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1]
 gi|192286846|gb|ACF03227.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           TIE-1]
          Length = 173

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C                   ++   CI CG CE  CP  AI+
Sbjct: 51  ERCVACNL--CATVCPVGCIDLAKAVADDGRWYPEHFRVNFARCIFCGFCEDACPTAAIQ 108

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 109 LTPDYELSEW 118


>gi|157962856|ref|YP_001502890.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157847856|gb|ABV88355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 190

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           +C  C++  CV+VCP    Y  ++ +  I+  +C+ C  C   CP     I P+T    +
Sbjct: 59  SCEQCENAPCVKVCPTGAAYVNDDGIVSINEKKCVGCLYCVAACPYKVRFINPETRVPDK 118


>gi|145590102|ref|YP_001156699.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|145048508|gb|ABP35135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
          Length = 88

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D  Y G     I P +C +C        C   CPVD 
Sbjct: 1  MALLITDECINCDV--CEPECPNDAIYMGLEIYEIDPAKCTECVGHYDAPQCRQVCPVDC 58

Query: 55 I--KPDTEPGLEL 65
          I   PD     + 
Sbjct: 59 IPFHPDYVESQDQ 71


>gi|91202796|emb|CAJ72435.1| similar to sodium dependent NADH:ubiquinone oxidoreductase RnfB
           [Candidatus Kuenenia stuttgartiensis]
          Length = 274

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI CK   C + CP D  +   N   I   +C  CG C   CP   I
Sbjct: 212 DSCIACK--RCEKECPYDAIHVQNNLAVIDYQKCTSCGKCVDVCPNHTI 258



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH----------------PDECIDCGVCE 47
           V+ E C  C    C EVCP +          +H                 D CI C  CE
Sbjct: 164 VIRERCTGCG--KCAEVCPREIISILPESKMVHVRCKSLDKGAVAKKICQDSCIACKRCE 221

Query: 48  PECPVDAIK 56
            ECP DAI 
Sbjct: 222 KECPYDAIH 230



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           CVE C  +  Y G++ L  +  + C  CG C   CP + I
Sbjct: 145 CVEACKFEAMYMGKDGLPKVIRERCTGCGKCAEVCPREII 184


>gi|16125654|ref|NP_420218.1| ferredoxin [Caulobacter crescentus CB15]
 gi|221234408|ref|YP_002516844.1| polyferredoxin protein fixG [Caulobacter crescentus NA1000]
 gi|13422764|gb|AAK23386.1| ferredoxin, putative [Caulobacter crescentus CB15]
 gi|220963580|gb|ACL94936.1| polyferredoxin protein fixG [Caulobacter crescentus NA1000]
          Length = 496

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 16/64 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV VCP+       + L     ECI+CG+C   C         P   I  D
Sbjct: 282 DCIDC--RQCVVVCPMGIDIRDGSQL-----ECINCGLCVDACDDILGKLGRPTGLIAYD 334

Query: 59  TEPG 62
           T+  
Sbjct: 335 TDAA 338


>gi|16764806|ref|NP_460421.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161614123|ref|YP_001588088.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994289|ref|ZP_02575381.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168240974|ref|ZP_02665906.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168264619|ref|ZP_02686592.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194448094|ref|YP_002045496.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197265920|ref|ZP_03165994.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198244365|ref|YP_002215677.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|24638186|sp|Q8ZPM1|RNFB_SALTY RecName: Full=Electron transport complex protein rnfB
 gi|189043388|sp|A9N024|RNFB_SALPB RecName: Full=Electron transport complex protein rnfB
 gi|226735426|sp|B5FIE6|RNFB_SALDC RecName: Full=Electron transport complex protein rnfB
 gi|226735429|sp|B4THD5|RNFB_SALHS RecName: Full=Electron transport complex protein rnfB
 gi|16419979|gb|AAL20380.1| putative alternative beta subunit of Na+-transporting
           NADH:ubiquinone oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161363487|gb|ABX67255.1| hypothetical protein SPAB_01862 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406398|gb|ACF66617.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197244175|gb|EDY26795.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197938881|gb|ACH76214.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205327845|gb|EDZ14609.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339698|gb|EDZ26462.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205346940|gb|EDZ33571.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261246662|emb|CBG24472.1| Electron transport complex protein rnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993348|gb|ACY88233.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157991|emb|CBW17486.1| Electron transport complex protein rnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912441|dbj|BAJ36415.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224077|gb|EFX49140.1| Electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129728|gb|ADX17158.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623423|gb|EGE29768.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988343|gb|AEF07326.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 192

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIE 163


>gi|91975993|ref|YP_568652.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91682449|gb|ABE38751.1| phenylglyoxylate:acceptor oxidoreductase PadI subunit
           [Rhodopseudomonas palustris BisB5]
          Length = 442

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV VCP     +  +   I     +C+DC +C   C    I  D   G
Sbjct: 54  CRQCGDPKCVTVCPAGALAKDGDTGVIGWDAGKCVDCLLCTVGCAYAGIARDETDG 109


>gi|28898284|ref|NP_797889.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837769|ref|ZP_01990436.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ3810]
 gi|254229544|ref|ZP_04922957.1| Ferredoxin [Vibrio sp. Ex25]
 gi|260361866|ref|ZP_05774875.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030]
 gi|260878621|ref|ZP_05890976.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896153|ref|ZP_05904649.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           Peru-466]
 gi|262394268|ref|YP_003286122.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25]
 gi|28806501|dbj|BAC59773.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748874|gb|EDM59709.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ3810]
 gi|151937917|gb|EDN56762.1| Ferredoxin [Vibrio sp. Ex25]
 gi|262337862|gb|ACY51657.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25]
 gi|308086193|gb|EFO35888.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308091268|gb|EFO40963.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308111393|gb|EFO48933.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030]
          Length = 553

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGQSPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|330898583|gb|EGH30002.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 291

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECP 51
            ++    CI C  T C++ CPVD            I  DEC  C +C   CP
Sbjct: 84  AFIREAECIGC--TKCIQACPVDAILGASRLMHTVII-DECTGCDLCVAPCP 132



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I   ECI C  C   CPVDAI
Sbjct: 85  FIREAECIGCTKCIQACPVDAI 106


>gi|317487472|ref|ZP_07946258.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921261|gb|EFV42561.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 591

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C    C++  CP     D  +   G+    I P  C+ CGVC   CPV AI
Sbjct: 529 VDADKCIACG--KCIQSGCPSVVLSDAVHPKTGKRKARIEPVTCVGCGVCSQICPVQAI 585


>gi|312880828|ref|ZP_07740628.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784119|gb|EFQ24517.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 590

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 4   VVTEN-CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV ++ C+ CK   C+   CP     +G   + I P +C  CG+C   CP  AI  + E
Sbjct: 533 VVDQSTCVKCK--SCLRPGCPGIAMKDG--VIVIDPAQCNGCGLCMQLCPKQAISREGE 587


>gi|288961355|ref|YP_003451694.1| protein [Azospirillum sp. B510]
 gi|288913663|dbj|BAI75150.1| protein [Azospirillum sp. B510]
          Length = 507

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 18/62 (29%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +CI C H  CV+VCP      +G         ECI CG+C   C         P D I+ 
Sbjct: 280 DCIDCGH--CVQVCPTGIDIRDGIQM------ECIGCGLCVDACNDVMARIGRPGDLIRF 331

Query: 58  DT 59
           DT
Sbjct: 332 DT 333


>gi|325980919|ref|YP_004293321.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           sp. AL212]
 gi|325530438|gb|ADZ25159.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           sp. AL212]
          Length = 227

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +  DEC  C +C   CP+D I
Sbjct: 86  CIGC--TFCIQSCPVDAIVGAAKQMHTVITDECTGCDLCVTPCPMDCI 131



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C    CV  CP+DC   
Sbjct: 108 MHTVITDECTGCDL--CVTPCPMDCISM 133



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + CI C  C   CPVDAI
Sbjct: 81  IDENLCIGCTFCIQSCPVDAI 101


>gi|237747267|ref|ZP_04577747.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378618|gb|EEO28709.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 260

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            E+C +C    C ++CPV      +       + CI CG C   CP +
Sbjct: 185 GEDCNVCG--TCAQICPVHAITVSDTKTQTDENLCISCGACITACPSE 230


>gi|257789890|ref|YP_003180496.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257473787|gb|ACV54107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 190

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           Y +  +C  C + +CV VCP    Y+ ++ +  +   +CI C  C   CP      DT
Sbjct: 53  YYLPVSCQHCDNPECVSVCPTGASYKRDDGVVLVDHSKCIGCQYCVMACPYGVRAYDT 110


>gi|218883519|ref|YP_002427901.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Desulfurococcus kamchatkensis 1221n]
 gi|218765135|gb|ACL10534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Desulfurococcus kamchatkensis 1221n]
          Length = 160

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 17 CVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
          CV  CP +   +   +    ++PD+CI CGVC  +CP  AI 
Sbjct: 45 CVSACPFNAISKSRIYEVPRLNPDKCIGCGVCVGKCPGLAIF 86


>gi|254486059|ref|ZP_05099264.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp.
          GAI101]
 gi|214042928|gb|EEB83566.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp.
          GAI101]
          Length = 390

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP----DTEPG 62
          E CI C    C   CPV      +N + ++ D C  C  C P CP  +I      DT   
Sbjct: 13 EICIRC--YTCEMTCPVGAIEHDDNNVVVNFDTCNFCMDCIPVCPTGSIDEWRVVDTPYS 70

Query: 63 LELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
          LE   +++     + P+    + + PS  + D +
Sbjct: 71 LEQQYEMD-----ELPDQEDIEVATPSGDEADPI 99



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI+ D  
Sbjct: 10 IDPEICIRCYTCEMTCPVGAIEHDDN 35


>gi|150008159|ref|YP_001302902.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
 gi|255015113|ref|ZP_05287239.1| putative nitroreductase [Bacteroides sp. 2_1_7]
 gi|149936583|gb|ABR43280.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
          Length = 286

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++     P  
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVSHSEFPPE 65

Query: 64 E 64
          +
Sbjct: 66 K 66



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          L I  + CI CG C   CP D I      G 
Sbjct: 3  LNIDQESCIKCGKCVRVCPSD-IFTQERAGE 32


>gi|41406467|ref|NP_959303.1| hypothetical protein MAP0369 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394816|gb|AAS02686.1| hypothetical protein MAP_0369 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 324

 Score = 50.2 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C  C H  C++VCP    +  E   + +  D C  CG C   CP   ++
Sbjct: 127 SDVCKHCTHAGCLDVCPTGALFRTEFGTVVVQHDVCNGCGTCVAGCPFGVVE 178


>gi|327401004|ref|YP_004341843.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316512|gb|AEA47128.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 254

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C  C    C E+CP       +    + I  D CI CG C   CP +AI+
Sbjct: 169 VNDDACQGCGV--CCEICPSMAISLQDPSKSVEIDEDRCIYCGACSNACPTNAIE 221



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T C + CP +    G        + CI CG C   CP +AI  +  
Sbjct: 119 TVCKDSCPRNAIMLGGRMR--DDELCIYCGACSKACPEEAIYVEKP 162



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E CI C    C + CP +  Y  + F   + ++ D C  CGVC   CP  AI     
Sbjct: 140 ELCIYCG--ACSKACPEEAIYVEKPFSGSVIVNDDACQGCGVCCEICPSMAISLQDP 194



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDAI 55
          + C+ C+   C   CP +                + I  + CI CG+C   C ++AI
Sbjct: 33 QRCVGCEL--CSTACPKNAIKLNPPASVKLGYPPVVIDAETCILCGICSEVCLLNAI 87


>gi|325660837|ref|ZP_08149465.1| hypothetical protein HMPREF0490_00197 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085429|ref|ZP_08334514.1| hypothetical protein HMPREF0987_00817 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325472911|gb|EGC76121.1| hypothetical protein HMPREF0490_00197 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330407667|gb|EGG87165.1| hypothetical protein HMPREF0987_00817 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 207

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y +T  C  CK   C  VCP +C         I  + C+ CG C   CP  A+
Sbjct: 153 YEITHKCNGCK--ACQSVCPQNCIDFTIIPAVIRQENCLHCGNCLSICPQKAV 203


>gi|323169186|gb|EFZ54862.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           sonnei 53G]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|320641983|gb|EFX11347.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. G5101]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-- 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I   
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  --PDTEPGLEL 65
              +T    + 
Sbjct: 166 QVAETPDSWKW 176


>gi|296134413|ref|YP_003641660.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola sp. JR]
 gi|296032991|gb|ADG83759.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermincola potens JR]
          Length = 591

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V    CI CK   C+++ CP      G   ++++   C  CG+C   C V AI+ + E
Sbjct: 535 VDAGACIGCK--RCMKLGCP--ALVAGPEKVSVNAALCTGCGLCAQTCNVGAIRKEGE 588


>gi|293370286|ref|ZP_06616843.1| putative ferredoxin-type protein NapF [Bacteroides ovatus SD CMC
           3f]
 gi|292634581|gb|EFF53113.1| putative ferredoxin-type protein NapF [Bacteroides ovatus SD CMC
           3f]
          Length = 514

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 417 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 476

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 477 CPARPFRAIYIEGNPVQKE 495



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 391 DCTVCGD-----VCPNGAILPISVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 445

Query: 53  DAI 55
            A+
Sbjct: 446 QAV 448


>gi|293396259|ref|ZP_06640538.1| electron transport complex protein RnfB [Serratia odorifera DSM
           4582]
 gi|291421239|gb|EFE94489.1| electron transport complex protein RnfB [Serratia odorifera DSM
           4582]
          Length = 191

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 109 AFIDEANCIGC--TKCIQACPVDAIVGATRAMHTVITDLCTGCDLCVAPCPTDCIE 162



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 18  VEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D   E          I    CI C  C   CPVDAI
Sbjct: 90  VEPQPLDGGEEVAQPTRKVAFIDEANCIGCTKCIQACPVDAI 131


>gi|260899671|ref|ZP_05908066.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109467|gb|EFO47007.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTHALHTDGQSPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|229497131|ref|ZP_04390834.1| ferredoxin [Porphyromonas endodontalis ATCC 35406]
 gi|229315948|gb|EEN81878.1| ferredoxin [Porphyromonas endodontalis ATCC 35406]
          Length = 320

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    C + CP        N   I   +C  C  C   CP  AI  +  P  + 
Sbjct: 219 ACIGCG--KCAKECPFGAITVENNLAYIDHTKCRLCRKCVAVCPTHAIHEENFPPRKP 274



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 15  TDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
            DC + C  D  +         +  D+C  CG C   CP   I+
Sbjct: 145 GDCADSCGFDALHMDATTGLPVVDQDKCTSCGACVKACPKTIIE 188


>gi|226356948|ref|YP_002786688.1| polyferredoxin [Deinococcus deserti VCD115]
 gi|226318938|gb|ACO46934.1| putative polyferredoxin [Deinococcus deserti VCD115]
          Length = 341

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V E CI C    C  VCP +        +G   L +    C  C  C   CP  AI    
Sbjct: 264 VDEKCIDC--PVCANVCPTEAITRDLQPDGGVRLLLDLSACTGCMACLHSCPPGAIYAQD 321

Query: 60  E 60
           E
Sbjct: 322 E 322



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 16 DCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C   CP      G     + I PD C  CG+C   CP  A++   +P L+
Sbjct: 36 ACHTTCPHQAVNLGPLGASIQIDPDLCTGCGLCVQVCPTGALEYGLQPALQ 86



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPG 62
           ++CIDC VC   CP +AI  D +P 
Sbjct: 266 EKCIDCPVCANVCPTEAITRDLQPD 290


>gi|329955641|ref|ZP_08296549.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328526044|gb|EGF53068.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 277

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  C   CP     +G+       ++CI C  C   CP  A   DT 
Sbjct: 205 VDAELCNHCGY--CAAHCPAGAIAKGDECNT-DAEKCIRCCACVKGCPQKARTFDTP 258



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 12/33 (36%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                 A+  + C  CG C   CP  AI    E
Sbjct: 198 PTPRIPAVDAELCNHCGYCAAHCPAGAIAKGDE 230


>gi|323188717|gb|EFZ74002.1| hydrogenase-4 component A [Escherichia coli RN587/1]
          Length = 162

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|317055057|ref|YP_004103524.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Ruminococcus albus 7]
 gi|315447326|gb|ADU20890.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 7]
          Length = 603

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TE CI C+    +  CP     +G   +AI    C  CG+C   CPV+AI
Sbjct: 549 TEKCINCQKCKNLLGCPGLVLRDG--KIAIEESLCTGCGLCAQVCPVNAI 596


>gi|168212642|ref|ZP_02638267.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens CPE str. F4969]
 gi|170715827|gb|EDT28009.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens CPE str. F4969]
          Length = 273

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C++VCP++     ++   I+  ECI C  C  ECPV A++
Sbjct: 226 DKCIKCG--KCLKVCPMNVEVNKDSRKRINATECILCYECVKECPVKALR 273



 Score = 43.2 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 15/76 (19%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDAI 55
           + +V+ +N   CK+     +CPV  F +  ++ +I     H D+CI CG C   CP++  
Sbjct: 189 LAFVLKDNRAFCKY-----ICPVTVFLKPMSYYSIIRVHCHEDKCIKCGKCLKVCPMN-- 241

Query: 56  KPDTEPGLELWLKINS 71
               E   +   +IN+
Sbjct: 242 ---VEVNKDSRKRINA 254


>gi|168204376|ref|ZP_02630381.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens E str. JGS1987]
 gi|170664130|gb|EDT16813.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium
           perfringens E str. JGS1987]
          Length = 273

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C++VCP++     ++   I+  ECI C  C  ECPV A++
Sbjct: 226 DKCIKCG--KCLKVCPMNVEVNKDSRKRINATECILCYECVKECPVKALR 273



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 15/76 (19%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDAI 55
           + +V+ +N   CK+     +CPV  F +  ++ +I     + D+CI CG C   CP++  
Sbjct: 189 LAFVLKDNRAFCKY-----ICPVTVFLKPMSYYSIIRVHCNEDKCIKCGKCLKVCPMN-- 241

Query: 56  KPDTEPGLELWLKINS 71
               E   +   +IN+
Sbjct: 242 ---VEVNKDSRKRINA 254


>gi|148827168|ref|YP_001291921.1| formate dehydrogenase accessory protein [Haemophilus influenzae
           PittGG]
 gi|148718410|gb|ABQ99537.1| formate dehydrogenase accessory protein [Haemophilus influenzae
           PittGG]
          Length = 548

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +     D+CI CG C   CP +
Sbjct: 104 DGCMHCTEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFN 152


>gi|148265954|ref|YP_001232660.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter
           uraniireducens Rf4]
 gi|146399454|gb|ABQ28087.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter
           uraniireducens Rf4]
          Length = 315

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
           E CI C    C + C       G++       D+CI CG C   CP +A
Sbjct: 171 EECISCGL--CAKSCTEGAIAMGDDGKPVFRADKCIYCGDCVKVCPTEA 217



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 11  LCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                 C   CP     D  ++G  +  +  +ECI CG+C   C   AI    +
Sbjct: 140 KVGFAGCPFDCPKSATNDVGFQGAIWPELSKEECISCGLCAKSCTEGAIAMGDD 193


>gi|78043445|ref|YP_360076.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995560|gb|ABB14459.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 368

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C   CP            I+ + CI CG C   C   AIK + +  
Sbjct: 190 VNAEICTGC--RKCARWCPAQAISYENGKAVINYELCIGCGECTVTCNYHAIKINWKDE 246


>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
          Length = 627

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+  E C  C  T C  VCP      E +    I+ D C+ CG C  +C   +I+
Sbjct: 573 YINPEKCKGC--TVCSRVCPAGAITGEKKQPHVINVDLCLKCGACMEKCKFGSIE 625



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP     +      I+P++C  C VC   CP  AI  + +   
Sbjct: 561 CPAGA-CQALKEYYINPEKCKGCTVCSRVCPAGAITGEKKQPH 602


>gi|148826320|ref|YP_001291073.1| Fe-S-cluster-containing hydrogenase subunit NrfC [Haemophilus
           influenzae PittEE]
 gi|229846097|ref|ZP_04466209.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 7P49H1]
 gi|148716480|gb|ABQ98690.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae PittEE]
 gi|229811101|gb|EEP46818.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 7P49H1]
 gi|309973461|gb|ADO96662.1| Nitrite reductase complex, Fe-S subunit NrfC [Haemophilus
           influenzae R2846]
          Length = 225

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D CI C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPY 139


>gi|323270990|gb|EGA54422.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica
          subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 138

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 11 LCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++  G 
Sbjct: 2  HCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSAKGH 55


>gi|320165166|gb|EFW42065.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Capsaspora
           owczarzaki ATCC 30864]
          Length = 230

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 129 ERCIACKL--CEAICPAMAITIEAEPRADGSRRTTRYDIDLTKCIYCGFCQEACPVDAI 185



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 170 CIYCGF--CQEACPVDAIVEGPNFEY 193



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 129 ERCIACKLCEAICPAMAITIEAEPRAD 155


>gi|294140408|ref|YP_003556386.1| NADH dehydrogenase I subunit I [Shewanella violacea DSS12]
 gi|293326877|dbj|BAJ01608.1| NADH dehydrogenase I, I subunit [Shewanella violacea DSS12]
          Length = 184

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E  +         I+   CI CG CE  CP  AI+
Sbjct: 62  ERCVACNL--CSVACPVDCISVEKTEKPDGRWEAKTFTINFSRCIMCGFCEEACPTHAIQ 119

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKK 84
              +  +  + + N  Y      I+   
Sbjct: 120 LTPDFEMAEYDRQNLVYEKHHLLISGPG 147


>gi|262171465|ref|ZP_06039143.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
 gi|261892541|gb|EEY38527.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFIE 247



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|256829783|ref|YP_003158511.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578959|gb|ACU90095.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 173

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V   C  C + DC+  CP       E+    +H D+C  CG C   CP   I+
Sbjct: 49  VPSVCFQCANPDCLAACPEGAIRHDESGTVLVHTDKCTGCGGCVDACPWGQIR 101



 Score = 37.8 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V T+ C  C    CV+ CP      G   +AI  D C     C  EC  +A+        
Sbjct: 80  VHTDKCTGCGG--CVDACPWGQIRMGAKNVAIKCDLCGGEPSCVAECSAEALVFTEPDKD 137


>gi|229826962|ref|ZP_04453031.1| hypothetical protein GCWU000182_02346 [Abiotrophia defectiva ATCC
           49176]
 gi|229788580|gb|EEP24694.1| hypothetical protein GCWU000182_02346 [Abiotrophia defectiva ATCC
           49176]
          Length = 286

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI C  + CV++CP  C     +   +  DECI C  C   CP  A
Sbjct: 213 EKCINC--SKCVKICPKSCIN--PDMSTV-KDECIVCMACVKICPTGA 255



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 25  CFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDT 59
             + G+    I     ++CI+C  C   CP   I PD 
Sbjct: 197 PVHTGKRIFTIPQTDKEKCINCSKCVKICPKSCINPDM 234


>gi|194442230|ref|YP_002040707.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226735430|sp|B4T595|RNFB_SALNS RecName: Full=Electron transport complex protein rnfB
 gi|194400893|gb|ACF61115.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIE 163


>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
 gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
          Length = 596

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C+ C  T C   CPVD    E +    I   +CI CG C+ +C  +AI
Sbjct: 546 QLCVGC--TLCSRNCPVDAIIGERKEAHFIDTTKCIKCGTCKDKCKFNAI 593



 Score = 40.1 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I P  C+ C +C   CPVDAI  + +   
Sbjct: 543 IDPQLCVGCTLCSRNCPVDAIIGERKEAH 571


>gi|319941590|ref|ZP_08015916.1| electron transport complex protein rnfB [Sutterella wadsworthensis
           3_1_45B]
 gi|319804960|gb|EFW01802.1| electron transport complex protein rnfB [Sutterella wadsworthensis
           3_1_45B]
          Length = 224

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            E CI C    CV  CP D        L  +    C  C +C P CP+D I
Sbjct: 97  AEECIGCSW--CVRACPTDAIGGSPKHLHAVLEARCTGCSLCAPACPMDCI 145



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  +ECI C  C   CP DAI
Sbjct: 95  IRAEECIGCSWCVRACPTDAI 115


>gi|297620126|ref|YP_003708231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379103|gb|ADI37258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 166

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 21/84 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-------------------HPDECIDCG 44
           V+TE C+ C    C++VCPV      +  L I                      +CI C 
Sbjct: 65  VITEKCVHCG--TCIDVCPVKAISLTQIKLKIKNNELKIKKSHEKHKLLNYDAKKCIMCN 122

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
           +C   CP DAI  +      ++ +
Sbjct: 123 ICLKNCPFDAISIEKNQNKMIFTE 146



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C+ C    C+EVCPVD           I  ++C+ CG C   CPV AI
Sbjct: 39 EKCVFCN--KCIEVCPVDAIDLNFPENTVIT-EKCVHCGTCIDVCPVKAI 85



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI+C    C++ CP D    E      I  ++C+ CG C   CP +AI  +
Sbjct: 118 CIMCN--ICLKNCPFDAISIEKNQNKMIFTEKCVLCGHCGQICPANAITYE 166



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I  ++C+ C  C   CPVDAI
Sbjct: 36 IDNEKCVFCNKCIEVCPVDAI 56


>gi|317052759|ref|YP_004113875.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947843|gb|ADU67319.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurispirillum indicum S5]
          Length = 187

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           E C  C +  CV VCPV   Y  E+  + ++   CI C +C   CP  A
Sbjct: 64  EQCHQCANPPCVPVCPVKATYAREDGVIVVNKSTCIGCTLCVISCPYGA 112



 Score = 33.6 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 33 LAIHPDECIDCGVCEPEC 50
          + + PD+CIDC  C+  C
Sbjct: 9  IVLDPDKCIDCKACDVAC 26


>gi|260778692|ref|ZP_05887584.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604856|gb|EEX31151.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE--LWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI        E   +++
Sbjct: 189 CVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAIHYALPNPQETQKFIE 247



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           +C LC    CV VCP    +       L     +C+ CG+C   CP +A
Sbjct: 419 DCTLC--MSCVAVCPSRALHTDGQSPSLKFVEQDCVQCGLCTKACPENA 465



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 42  DCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            C  C   CP  A+  +        ++IN
Sbjct: 185 GCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|237718617|ref|ZP_04549098.1| ferredoxin-type protein [Bacteroides sp. 2_2_4]
 gi|229452077|gb|EEO57868.1| ferredoxin-type protein [Bacteroides sp. 2_2_4]
          Length = 514

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 417 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 476

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 477 CPARPFRAIYIEGNPVQKE 495


>gi|212634095|ref|YP_002310620.1| polysulfide reductase subunit B [Shewanella piezotolerans WP3]
 gi|212555579|gb|ACJ28033.1| Polysulfide reductase, subunit B [Shewanella piezotolerans WP3]
          Length = 190

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           +C  C++  CV+VCP    Y  ++ +  I+  +C+ C  C   CP     I P+T    +
Sbjct: 59  SCEQCENAPCVKVCPTGAAYVNDDGIVSINEGKCVGCLYCVAACPYKVRFINPETRVPDK 118


>gi|193212915|ref|YP_001998868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chlorobaculum parvum NCIB 8327]
 gi|193086392|gb|ACF11668.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chlorobaculum parvum NCIB 8327]
          Length = 62

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M + + + C  C    C   CPV+    G++   I  D C+DC        C   CPVD 
Sbjct: 1  MAHRINDECTYC--AACEPECPVNAISPGDSIYVIDEDVCVDCVGYHDEPACVAVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|119509289|ref|ZP_01628439.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
           CCY9414]
 gi|119466131|gb|EAW47018.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nodularia spumigena
           CCY9414]
          Length = 117

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-------GVCEPECP-- 51
           M Y +T  CI C    C+ VCP +     +    I P+ C +C         C+  CP  
Sbjct: 1   MAYQITSQCISCDL--CLSVCPTNAVKVIDGNHWIDPELCTNCFGSVYSVPQCKAGCPTC 58

Query: 52  VDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
              +K   +     +   N   A     +T K+         +     Y K FS  
Sbjct: 59  TGCVKQPNDYWEGWFANYNRSLAK----LTKKQ------DYWERWFNYYSKTFSEK 104


>gi|24113018|ref|NP_707528.1| electron transport complex protein RnfB [Shigella flexneri 2a str.
           301]
 gi|30063143|ref|NP_837314.1| electron transport complex protein RnfB [Shigella flexneri 2a str.
           2457T]
 gi|82544004|ref|YP_407951.1| electron transport complex protein RnfB [Shigella boydii Sb227]
 gi|81723373|sp|Q83KY6|RNFB_SHIFL RecName: Full=Electron transport complex protein rnfB
 gi|123769444|sp|Q320Y5|RNFB_SHIBS RecName: Full=Electron transport complex protein rnfB
 gi|24051982|gb|AAN43235.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041392|gb|AAP17121.1| hypothetical protein S1785 [Shigella flexneri 2a str. 2457T]
 gi|81245415|gb|ABB66123.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|281601062|gb|ADA74046.1| Electron transport complex protein rnfB [Shigella flexneri 2002017]
 gi|313648903|gb|EFS13340.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332757135|gb|EGJ87475.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 4343-70]
 gi|332758097|gb|EGJ88422.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 2747-71]
 gi|332758458|gb|EGJ88779.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-671]
 gi|332767029|gb|EGJ97228.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 2930-71]
 gi|333003892|gb|EGK23427.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-218]
 gi|333017979|gb|EGK37284.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-304]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRVMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|331644286|ref|ZP_08345415.1| putative electron transport protein YsaA [Escherichia coli H736]
 gi|331036580|gb|EGI08806.1| putative electron transport protein YsaA [Escherichia coli H736]
          Length = 159

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 59  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 107


>gi|330805166|ref|XP_003290557.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
 gi|325079303|gb|EGC32909.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
          Length = 203

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 102 ERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 158


>gi|310777922|ref|YP_003966255.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926]
 gi|309747245|gb|ADO81907.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926]
          Length = 505

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  CK   C   CP+      +    I  D C+ CG+C   CP  AI+  TE  
Sbjct: 9  CKGCK--ICANNCPISAIDMLDKKALI-KDNCVSCGICLRVCPFAAIEKTTEEN 59


>gi|300924706|ref|ZP_07140654.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|301326565|ref|ZP_07219904.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
 gi|300419133|gb|EFK02444.1| 4Fe-4S binding domain protein [Escherichia coli MS 182-1]
 gi|300846727|gb|EFK74487.1| 4Fe-4S binding domain protein [Escherichia coli MS 78-1]
          Length = 208

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   CV VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|296536625|ref|ZP_06898700.1| cytochrome c oxidase accessory protein CcoG [Roseomonas cervicalis
           ATCC 49957]
 gi|296263045|gb|EFH09595.1| cytochrome c oxidase accessory protein CcoG [Roseomonas cervicalis
           ATCC 49957]
          Length = 495

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV VCP          L     ECI CG+C   C
Sbjct: 264 DCVDC--RACVHVCPTGIDIRDGQQL-----ECIGCGLCIDAC 299


>gi|296452037|ref|ZP_06893750.1| possible dihydroorotate oxidase [Clostridium difficile NAP08]
 gi|296879567|ref|ZP_06903548.1| possible dihydroorotate oxidase [Clostridium difficile NAP07]
 gi|296259110|gb|EFH05992.1| possible dihydroorotate oxidase [Clostridium difficile NAP08]
 gi|296429449|gb|EFH15315.1| possible dihydroorotate oxidase [Clostridium difficile NAP07]
          Length = 369

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           VV +N CI CK   CV  C  +   E  + L I  D+C  CG+C   CP  A
Sbjct: 308 VVDDNKCIKCKQ--CVTSCVYEAL-EVTDKLNIDADKCFGCGLCVTRCPKGA 356


>gi|258625037|ref|ZP_05719958.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
 gi|258582670|gb|EEW07498.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFIE 247



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|225418712|ref|ZP_03761901.1| hypothetical protein CLOSTASPAR_05936 [Clostridium asparagiforme
           DSM 15981]
 gi|225041767|gb|EEG52013.1| hypothetical protein CLOSTASPAR_05936 [Clostridium asparagiforme
           DSM 15981]
          Length = 175

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C+  CPV C  +     F       CI C  C   CP  A + 
Sbjct: 60  ACMHCDDAPCISACPVGCLRKDPETGFTVYDNANCIGCKSCALACPFGAPRF 111


>gi|161503449|ref|YP_001570562.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189043387|sp|A9MRW7|RNFB_SALAR RecName: Full=Electron transport complex protein rnfB
 gi|160864796|gb|ABX21419.1| hypothetical protein SARI_01523 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDENHCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIE 163


>gi|149194151|ref|ZP_01871249.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Caminibacter mediatlanticus TB-2]
 gi|149136104|gb|EDM24582.1| MOLYBDOPTERIN OXIDOREDUCTASE, IRON-SULFUR BINDING SUBUNIT
           [Caminibacter mediatlanticus TB-2]
          Length = 223

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP    +  E  +  +  D CI C  C   CP DA   D 
Sbjct: 61  CNHCIDAPCVTVCPTGASHFAEGGIVKVDYDMCIICKGCMEACPYDARFVDE 112


>gi|149185800|ref|ZP_01864115.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Erythrobacter sp.
           SD-21]
 gi|148830361|gb|EDL48797.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Erythrobacter sp.
           SD-21]
          Length = 436

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 7   ENCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C+ C    CV  CP        +G+  L   P  C+  G C+  CP DAI
Sbjct: 57  DLCLGCG--ACVIACPEKKILALIDGKAALV-EPTSCVGHGACQAACPFDAI 105



 Score = 40.9 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I+PD C+ CG C   CP   I
Sbjct: 54 INPDLCLGCGACVIACPEKKI 74


>gi|5734543|emb|CAB52772.1| polyferredoxin [Methanothermobacter thermautotrophicus]
          Length = 441

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
          E C  C    C+  CPVD  +   +   + I  D C  C +C   CP DAI+  T
Sbjct: 16 EKCRNCPDKPCLNACPVDAVHIDPDTGEVEID-DRCFGCVLCREACPYDAIRMKT 69



 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    CV  C     +     +      I  D+C+ CG C   CP +AIK 
Sbjct: 87  CRGCG--ACVSACRTGAIHLTSSGKTGVHSEIDEDKCVRCGYCARACPTEAIKY 138



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +V+ + C       CV  CPVD        + +  D CI CG C+  CPV A+K + E  
Sbjct: 385 HVICQRC-----GVCVNHCPVDAMAMDGE-VEVDDDTCILCGECQDICPVTAVKLNLEDD 438



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ E CI C    CV  CPV              D C+ CG C   CPVDA++
Sbjct: 303 VLEERCIGCGL--CVTECPVGVIEPVTPAPVEIKDGCVFCGRCRGVCPVDAVE 353



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 10/76 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + C  C    C E CP D             EN   I+P  C  CG C   C   AI 
Sbjct: 46  IDDRCFGC--VLCREACPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIH 103

Query: 57  PDTEPGLELWLKINSE 72
             +     +  +I+ +
Sbjct: 104 LTSSGKTGVHSEIDED 119



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 2   TYVVTE-NCILCKHTDCVEVCP-VDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
             VV + +CI C    C  VCP       G       I P  C  C  C   CP  AIK 
Sbjct: 151 AVVVNQRDCIGC--MTCTRVCPSRGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAIKY 208

Query: 58  DTEP-GLELWLKIN 70
            +     E + K+N
Sbjct: 209 SSRKRAYENFSKLN 222



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECIDCGVCEPECPV-DAIK 56
           + C+ C +  C   CP +    GE           + ++  +CI C  C   CP   AIK
Sbjct: 119 DKCVRCGY--CARACPTEAIKYGEILPRSVVGRKAVVVNQRDCIGCMTCTRVCPSRGAIK 176



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI CG+C  ECPV  I+P T   +E
Sbjct: 306 ERCIGCGLCVTECPVGVIEPVTPAPVE 332



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 24/80 (30%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL----------------------AIHPDECID 42
           + + C+ C    C  VCPVD     E                          +    C  
Sbjct: 333 IKDGCVFCG--RCRGVCPVDAVEITEEGFRASDGRIYLERRILRGPRSGSVEVDHVICQR 390

Query: 43  CGVCEPECPVDAIKPDTEPG 62
           CGVC   CPVDA+  D E  
Sbjct: 391 CGVCVNHCPVDAMAMDGEVE 410


>gi|293376666|ref|ZP_06622893.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|325845086|ref|ZP_08168399.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
 gi|292644724|gb|EFF62807.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|325488900|gb|EGC91296.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
          Length = 264

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +  T++CI CK   C +VCP+ C    +  +  +  EC  C  C   CP  AI+ 
Sbjct: 185 FFATDDCISCK--ICEKVCPIRCITVSKKPIWKN-SECTQCLACVNYCPKSAIQY 236



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           D+CI C +CE  CP+  I    +P  +
Sbjct: 189 DDCISCKICEKVCPIRCITVSKKPIWK 215


>gi|291617338|ref|YP_003520080.1| RnfB [Pantoea ananatis LMG 20103]
 gi|291152368|gb|ADD76952.1| RnfB [Pantoea ananatis LMG 20103]
 gi|327393783|dbj|BAK11205.1| electron transport complex protein RnfB [Pantoea ananatis AJ13355]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 116 NCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVAPCPTDCIE 163



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 18  VEVCPVDCFYEGE----NFLAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D   E +        I    CI C  C   CPVDAI
Sbjct: 91  VEPQPIDGDEEAKAPVRTVAWIDEANCIGCTKCIQACPVDAI 132


>gi|262165720|ref|ZP_06033457.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
 gi|262025436|gb|EEY44104.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFIE 247



 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|260913116|ref|ZP_05919598.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Pasteurella dagmatis ATCC 43325]
 gi|260632703|gb|EEX50872.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Pasteurella dagmatis ATCC 43325]
          Length = 226

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 94  SCQHCSNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPY 140


>gi|261402607|ref|YP_003246831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261369600|gb|ACX72349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 161

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C    C EVCP +   Y  +  + I+ ++C+ CG C+  CP +AI
Sbjct: 36 DKCIGCG--KCREVCPTNAITYNNKLHIVINREKCVFCGKCKEVCPTNAI 83



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C  C    C++ CP     E  + + I  ++C  CG CE  CP++AI
Sbjct: 111 SERCASCLV--CLKNCPFHAIEEYGDKIRIDINKCELCGKCEEICPLNAI 158


>gi|238023170|ref|ZP_04603596.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147]
 gi|237865553|gb|EEP66693.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147]
          Length = 159

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|229580426|ref|YP_002838826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228011142|gb|ACP46904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|323475866|gb|ADX86472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
          Length = 294

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 109 YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 161


>gi|237731328|ref|ZP_04561809.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906867|gb|EEH92785.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 208

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C++VCP+      + +  +A+    CI C  C   CP
Sbjct: 120 ADTCRQCKDPQCMKVCPIGAITWKQEDGCIAVDHKRCIGCSACTTACP 167


>gi|170768728|ref|ZP_02903181.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           albertii TW07627]
 gi|170122276|gb|EDS91207.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           albertii TW07627]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  + C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRSMHTVMSELCTGCNLCVDPCPTQCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|148379320|ref|YP_001253861.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931703|ref|YP_001383696.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935168|ref|YP_001387244.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|153939701|ref|YP_001390706.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|226948623|ref|YP_002803714.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288804|emb|CAL82888.1| putative iron-sulfur cluster binding protein [Clostridium botulinum
           A str. ATCC 3502]
 gi|152927747|gb|ABS33247.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931082|gb|ABS36581.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|152935597|gb|ABS41095.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|226843047|gb|ACO85713.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295318780|gb|ADF99157.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           230613]
 gi|322805661|emb|CBZ03226.1| ferredoxin [Clostridium botulinum H04402 065]
          Length = 425

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAIK 56
           + C+ C    C +VCP++     E  L  H         D C+ CGVC   C  +AIK
Sbjct: 292 DRCVGCG--KCTKVCPMEAIKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAIK 347



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I+ D C+ CG C   CP++AIK
Sbjct: 289 INKDRCVGCGKCTKVCPMEAIK 310


>gi|110641751|ref|YP_669481.1| electron transport complex protein RnfB [Escherichia coli 536]
 gi|123148053|sp|Q0THJ9|RNFB_ECOL5 RecName: Full=Electron transport complex protein rnfB
 gi|110343343|gb|ABG69580.1| electron transport complex protein RnfB [Escherichia coli 536]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|82777102|ref|YP_403451.1| electron transport complex protein RnfB [Shigella dysenteriae
           Sd197]
 gi|309788405|ref|ZP_07683009.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1617]
 gi|123769594|sp|Q32FE5|RNFB_SHIDS RecName: Full=Electron transport complex protein rnfB
 gi|81241250|gb|ABB61960.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308923787|gb|EFP69290.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1617]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3]
 gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3]
          Length = 410

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          C  C    C + CP    +     +  I  D+C+ CG C   CP  AI+ 
Sbjct: 22 CKGCD--ACKQFCPTHAIHGASGAVHSIDEDKCLSCGQCLINCPFSAIEE 69



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I+  +C  C  C+  CP  AI 
Sbjct: 17 INASKCKGCDACKQFCPTHAIH 38


>gi|325290604|ref|YP_004266785.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966005|gb|ADY56784.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 295

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLELW 66
           CI C    C+E C  +   +  +   +   EC  CGVCE  CPV AI  +PD    L L+
Sbjct: 69  CISCGL--CLEYCRFNAIKKNNSQYEVSCYECEGCGVCEAFCPVQAISLQPDKAGELRLY 126

Query: 67  L 67
           +
Sbjct: 127 M 127


>gi|320174121|gb|EFW49286.1| NrfC-like protein [Shigella dysenteriae CDC 74-1112]
          Length = 184

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP +  +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTEASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|283780218|ref|YP_003370973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283438671|gb|ADB17113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 175

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-----------FLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + CPVDC Y G+              AI   +C+ C +C   CPVD I  
Sbjct: 65  CIACDQ--CAKACPVDCIYIGKERVEGSKGFKITGFAIDYSKCMFCALCVEPCPVDCIFM 122

Query: 58  DTEPGLELW 66
                L  +
Sbjct: 123 GATHDLSCY 131


>gi|224370160|ref|YP_002604324.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
 gi|223692877|gb|ACN16160.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
          Length = 511

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C++C    C   CP    +      AI P  C  CG+C  ECP+DAI+
Sbjct: 322 CVICL--TCYRCCPHGAIFWENGVAAISPVACQGCGICASECPMDAIQ 367


>gi|218961804|ref|YP_001741579.1| electron transport complex protein rnfB, polyferredoxin subunit
           (rnfB module) [Candidatus Cloacamonas acidaminovorans]
 gi|167730461|emb|CAO81373.1| electron transport complex protein rnfB, polyferredoxin subunit
           (rnfB module) [Candidatus Cloacamonas acidaminovorans]
          Length = 287

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C  + C + CP +      N   I   +C DCG C   CP  AI
Sbjct: 231 PCIGC--SLCAKKCPAEAITVENNIARIDYGKCTDCGTCATVCPTKAI 276



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 12  CKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECP 51
               DC+  C  D    + E    I  ++C  CG C   CP
Sbjct: 156 VGFNDCIAACKFDAISIDNEGMRVIDREKCTGCGACVTACP 196



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 20/70 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI---------HP---------DECIDCGVCEP 48
           E C  C    CV  CP          + +         +P           CI C +C  
Sbjct: 183 EKCTGCG--ACVTACPRKLIMLVPESMNVFISCSSKDKNPLPKQNCGADKPCIGCSLCAK 240

Query: 49  ECPVDAIKPD 58
           +CP +AI  +
Sbjct: 241 KCPAEAITVE 250


>gi|167755797|ref|ZP_02427924.1| hypothetical protein CLORAM_01312 [Clostridium ramosum DSM 1402]
 gi|237734764|ref|ZP_04565245.1| predicted protein [Mollicutes bacterium D7]
 gi|167704736|gb|EDS19315.1| hypothetical protein CLORAM_01312 [Clostridium ramosum DSM 1402]
 gi|229382092|gb|EEO32183.1| predicted protein [Coprobacillus sp. D7]
          Length = 387

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1  MTYVVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          M  V++     CK+   CV+ CP+D        + I  D+CI+C +C   C
Sbjct: 1  MKQVISYLGSGCKNCIKCVKSCPMDAISIVNEQVIIDEDKCINCDICIQAC 51


>gi|159905591|ref|YP_001549253.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887084|gb|ABX02021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 252

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C E+CPV      +  + +   +CI CG CE  CPV AI
Sbjct: 199 DTCINC--MVCSEICPVGAIVYEDGLMKLDDKKCIFCGKCEKNCPVTAI 245



 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          YV T  C+ C+   C EVCPV    E   ++   I P++C+ C +C   CPV AI
Sbjct: 42 YVETNKCVRCEL--CYEVCPVQAIKEPSVKSPAEIIPEKCVKCEICAKTCPVGAI 94



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E+CI C    C   CP      E  N + I+ D C+ C  CE  CP  AIK + E G 
Sbjct: 132 ESCIKCG--ICERFCPTSAIKVEKRNSIEINLDLCMGCTACEKVCPKSAIKVENELGE 187



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C+ C  T C +VCP               EN ++++ D CI+C VC   CPV AI  +
Sbjct: 162 DLCMGC--TACEKVCPKSAIKVENELGEIPAENVISLNNDTCINCMVCSEICPVGAIVYE 219

Query: 59  T 59
            
Sbjct: 220 D 220



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 32/96 (33%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFL------------------------AIHP 37
           ++ E C+ C+   C + CPV      EG   L                         +  
Sbjct: 74  IIPEKCVKCE--ICAKTCPVGAINVLEGRAELKDDDVIYELKEIDVTHRKVRLVKHELDE 131

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
           + CI CG+CE  CP  AIK +        ++IN + 
Sbjct: 132 ESCIKCGICERFCPTSAIKVEKRNS----IEINLDL 163


>gi|119872881|ref|YP_930888.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674289|gb|ABL88545.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 368

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 2   TYVVTEN-CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
           T VV +  CI C    CV  CP   F   E   + +  D CIDCG+C   CPV+A+K  +
Sbjct: 76  TVVVDQAKCIWCG--MCVRSCPATAFEYVERKSIRVRYDRCIDCGLCNAVCPVEAVKMPS 133

Query: 60  EPG 62
            P 
Sbjct: 134 LPD 136



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V   C LC    CV VCP D        L + P  CI CGVC  +CP   IK       +
Sbjct: 252 VAGGCTLCG--ACVNVCPTDALSIKGFELRLTPALCIACGVCVEKCPEKVIKIGKTREDK 309

Query: 65  LW 66
            +
Sbjct: 310 PY 311



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK-------INSEYATQWPNITTK 83
           + + +   +CI CG+C   CP  A +      + +           N+      P    K
Sbjct: 75  DTVVVDQAKCIWCGMCVRSCPATAFEYVERKSIRVRYDRCIDCGLCNA----VCPVEAVK 130

Query: 84  KESLPSA 90
             SLP  
Sbjct: 131 MPSLPDG 137


>gi|83590741|ref|YP_430750.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573655|gb|ABC20207.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 228

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +  +C +C++  C +VCPV   Y  +     +  + CI C  C   CP    + + E 
Sbjct: 58  YFLPVSCQMCENAPCEKVCPVGATYTDDRGRVLVDYERCIGCRYCMAACPYGVRQFNWED 117

Query: 62  GLE 64
             +
Sbjct: 118 QQK 120


>gi|83590717|ref|YP_430726.1| ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
 gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
          Length = 460

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPD 58
          M Y+  + C  C    C E+CP     EG       I+ + C++CG C   C   A    
Sbjct: 1  MIYIDRDLCTGC--RRCAEICPTGAI-EGNQGEPQIINREICVNCGQCVQICSAYASPYT 57

Query: 59 TEPGLELWLKINSE 72
          T P  E     N E
Sbjct: 58 TSP--ETMAAKNRE 69


>gi|157156899|ref|YP_001462967.1| hypothetical protein EcE24377A_1889 [Escherichia coli E24377A]
 gi|157078929|gb|ABV18637.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
          Length = 208

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   CV VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCVNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|119774966|ref|YP_927706.1| electron transport complex protein RnfB [Shewanella amazonensis
           SB2B]
 gi|166225085|sp|A1S6N0|RNFB_SHEAM RecName: Full=Electron transport complex protein rnfB
 gi|119767466|gb|ABM00037.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 189

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD            I  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAIVGAGKLMHTVITQD-CTGCDLCVEPCPVDCI 159



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T++C  C    CVE CPVDC 
Sbjct: 136 MHTVITQDCTGCDL--CVEPCPVDCI 159


>gi|332993968|gb|AEF04023.1| electron transport complex protein RnfB [Alteromonas sp. SN2]
          Length = 189

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +  +EC  C +C   CPVD I
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAILGAAKHMHTVIVEECTGCDLCVDPCPVDCI 159



 Score = 37.1 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 18  VEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           VE  P+D  +  E+      I  DECI C  C   CPVDAI
Sbjct: 89  VEPKPLDAAHGEEDTKKVAFIREDECIGCTKCIQACPVDAI 129


>gi|331654382|ref|ZP_08355382.1| putative electron transport protein YgfS [Escherichia coli M718]
 gi|331047764|gb|EGI19841.1| putative electron transport protein YgfS [Escherichia coli M718]
          Length = 163

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|331268324|ref|YP_004394816.1| hydrogenase [Clostridium botulinum BKT015925]
 gi|329124874|gb|AEB74819.1| hydrogenase [Clostridium botulinum BKT015925]
          Length = 448

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 8   NC-ILCKHTD----CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C + C  T     C + CP D     +  N   I  D+C DCG C   CP  +I    E
Sbjct: 80  DCSMDCSDTGELTLCQKSCPFDAILVDKNTNSTYISLDKCTDCGFCVNACPTGSILDKIE 139


>gi|282855938|ref|ZP_06265229.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
 gi|282586157|gb|EFB91434.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Pyramidobacter piscolens W5455]
          Length = 596

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C++  CP   F + E  ++I   +C+ C VC   CPV AI
Sbjct: 543 EKCIGCK--KCLQTGCPALSFDKYERKVSIDRMQCVGCTVCAQVCPVKAI 590


>gi|260772822|ref|ZP_05881738.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
 gi|260611961|gb|EEX37164.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP          +  + + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSAQTGHRIEINPYLCQGIGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFVE 247



 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECP 51
           +++C LC    CV VCP    +   +  A+H    +C+ CG+C   CP
Sbjct: 417 SQDCTLC--MSCVAVCPTRALHHSGDIPALHFTEQDCVQCGLCVTACP 462



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  ++ D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLNTDLCAHSSRGVKGCERCVDACPAGALSSEGSAQTGHRIEIN 213


>gi|187780016|ref|ZP_02996489.1| hypothetical protein CLOSPO_03612 [Clostridium sporogenes ATCC
           15579]
 gi|187773641|gb|EDU37443.1| hypothetical protein CLOSPO_03612 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAIK 56
           + C+ C    C +VCP++     E  L  H         D C+ CGVC   C  +AIK
Sbjct: 292 DRCVGCG--KCTKVCPMEAIKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAIK 347



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I+ D C+ CG C   CP++AIK
Sbjct: 289 INKDRCVGCGKCTKVCPMEAIK 310


>gi|168184134|ref|ZP_02618798.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|237794698|ref|YP_002862250.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
 gi|182672734|gb|EDT84695.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|229261438|gb|ACQ52471.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAIK 56
           + C+ C    C +VCP++     E  L  H         D C+ CGVC   C  +AIK
Sbjct: 292 DRCVGCG--KCTKVCPMEAIKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAIK 347



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I+ D C+ CG C   CP++AIK
Sbjct: 289 INKDRCVGCGKCTKVCPMEAIK 310


>gi|145299425|ref|YP_001142266.1| electron transport complex protein RnfB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166225079|sp|A4SNP6|RNFB_AERS4 RecName: Full=Electron transport complex protein rnfB
 gi|142852197|gb|ABO90518.1| electron transport complex protein RnfB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 187

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++  + CI C  T C++ CPVD        +  +  DEC  C +C   CP D I+
Sbjct: 108 AFIHEDQCIGC--TKCIQACPVDAIVGATKAMHTVITDECTGCDLCVDPCPTDCIE 161



 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+T+ C  C    CV+ CP DC   
Sbjct: 137 MHTVITDECTGCDL--CVDPCPTDCIEM 162


>gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1]
 gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum
           hungatei JF-1]
          Length = 262

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           MT V+ +  C+ C    C   CPV      E    I  D CI CG C   CP
Sbjct: 185 MTKVINQGLCMGCG--TCATSCPVFAITMEEGKPNIQRDMCIKCGACYAACP 234



 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDT 59
            I+   C+ CG C   CPV AI  + 
Sbjct: 188 VINQGLCMGCGTCATSCPVFAITMEE 213


>gi|113968836|ref|YP_732629.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113883520|gb|ABI37572.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 235

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A  I  DT+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTDVAD 164

Query: 64  ELWLKINSEYAT 75
                +NS+ A 
Sbjct: 165 NCDFCLNSKLAK 176


>gi|325957922|ref|YP_004289388.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329354|gb|ADZ08416.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 658

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C  C+   C+++CP       +    I+   C  CG C   CP  A+      
Sbjct: 585 ALVDEDVCGGCEV--CIDLCPYGAVERIDEKAHINVALCKGCGTCVGACPSGALDQQHFK 642

Query: 62  GLELWLKINSEY 73
             +++ +I +  
Sbjct: 643 TSQIFAQIEAAM 654



 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 20/78 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENFL---------------AIHPDECIDCG 44
           Y+    C  C    C EVCP++    F EG   +                I  D CI+C 
Sbjct: 249 YIDESVCTGCG--SCTEVCPIEIPNYFDEGVGMVKATYIPFPQAVPLCATIDKDYCIECK 306

Query: 45  VCEPECPVDAIKPDTEPG 62
           +C+  C   AIK D EP 
Sbjct: 307 LCDQVCGNGAIKHDQEPE 324


>gi|323169237|gb|EFZ54913.1| hypothetical protein SS53G_0407 [Shigella sonnei 53G]
          Length = 184

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|317485988|ref|ZP_07944843.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922761|gb|EFV43992.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 175

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C  C++  C  +CP     + +  + ++   C  C +C   CP  AI  ++
Sbjct: 69  SCRQCENAPCARICPTGALQQDDGIVTMNAQICSGCQLCIMACPYGAISLES 120


>gi|299146147|ref|ZP_07039215.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_23]
 gi|298516638|gb|EFI40519.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_23]
          Length = 288

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T +CI C    CV+ CP +      N   I P +C  C  C   CP + I     P  + 
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNTIIELNFPPRKP 275

Query: 66  WLKINSE 72
            ++  +E
Sbjct: 276 KVEEVAE 282



 Score = 40.5 bits (94), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|294670450|ref|ZP_06735332.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307914|gb|EFE49157.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 159

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTIRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|288559910|ref|YP_003423396.1| ferredoxin [Methanobrevibacter ruminantium M1]
 gi|288542620|gb|ADC46504.1| ferredoxin [Methanobrevibacter ruminantium M1]
          Length = 291

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + +++NC +CK     ++C         + + I  ++C+ CG C   C  +AI+
Sbjct: 214 HPISDNCKMCKKCLGDDICFGGAISLENDKITIDQNKCVGCGHCVQTCKFNAIE 267


>gi|268324149|emb|CBH37737.1| hypothetical protein, containing 4Fe-4S binding domains
          [uncultured archaeon]
          Length = 103

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V  E C+ C    C  VC        +    +  + CI C  C   CP  AI+
Sbjct: 12 AFVNEELCVGCG--KCTGVCWTGAIGIVDKKAVVDFNRCICCTACVRACPKGAIQ 64


>gi|255010643|ref|ZP_05282769.1| putative ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 278

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+  L    + CI C  C   CP  A   DT 
Sbjct: 211 CTHCG--ACAKMCPVSAIIKGDE-LNTDAERCIKCCACVKGCPQKARVYDTP 259



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG C   CPV AI    E
Sbjct: 207 DESLCTHCGACAKMCPVSAIIKGDE 231


>gi|256810302|ref|YP_003127671.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
 gi|256793502|gb|ACV24171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus fervens AG86]
          Length = 163

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
          + CI C    C+EVCPV+     ++ L I+   ++C+ CG C+  CP DA+
Sbjct: 37 DKCINCG--RCIEVCPVNAINYDKSGLFINIEKEKCVFCGKCKMVCPTDAV 85



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E C  C    C+  CP +   E    + I  ++C  CG CE  CP++AI
Sbjct: 113 SEKCASCLV--CLRNCPFNAIEEYGEKIRIDINKCELCGRCEEICPLNAI 160



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          D+CI+CG C   CPV+AI  D
Sbjct: 37 DKCINCGRCIEVCPVNAINYD 57


>gi|256826547|ref|YP_003150506.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582690|gb|ACU93824.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 177

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C  C    C  VCP +  + E    +AI  + CI C  C   CP  A+
Sbjct: 56  ACRHCVDAPCAAVCPTEALYREEGGRVAIREENCIGCRNCVMACPYGAV 104


>gi|222034581|emb|CAP77323.1| electron transport protein ygfS [Escherichia coli LF82]
 gi|312947418|gb|ADR28245.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 162

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|168180011|ref|ZP_02614675.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182668962|gb|EDT80938.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 425

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAIK 56
           + C+ C    C +VCP++     E  L  H         D C+ CGVC   C  +AIK
Sbjct: 292 DRCVGCG--KCTKVCPMEAIKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAIK 347



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I+ D C+ CG C   CP++AIK
Sbjct: 289 INKDRCVGCGKCTKVCPMEAIK 310


>gi|159905592|ref|YP_001549254.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887085|gb|ABX02022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 161

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C++C    C + CP     E ++ ++   D+C+ CG CE  CP  AIK +
Sbjct: 112 QKCVMCLV--CSKNCPFGAISESDDKISFDMDKCVLCGHCEKICPAKAIKLE 161



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CI+C    C+EVCPV            I  D+C+ C  C   CPVDAIK
Sbjct: 36 ELCIMCD--RCLEVCPVTAISSNFPEVPHID-DKCVYCNTCVETCPVDAIK 83



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLELWLKIN 70
           N + I P+ CI C  C   CPV AI    P+     +  +  N
Sbjct: 28 NNKIEIDPELCIMCDRCLEVCPVTAISSNFPEVPHIDDKCVYCN 71



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 20/74 (27%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE------------------NFLAIHPDECIDCGVC 46
           + + C+ C    CVE CPVD     +                    L  +  +C+ C VC
Sbjct: 63  IDDKCVYCN--TCVETCPVDAIKITKTRVKVERGNLIIENRLKSENLEYNRQKCVMCLVC 120

Query: 47  EPECPVDAIKPDTE 60
              CP  AI    +
Sbjct: 121 SKNCPFGAISESDD 134


>gi|172035472|ref|YP_001801973.1| 4Fe-4S ferredoxin [Cyanothece sp. ATCC 51142]
 gi|57864810|gb|AAW56985.1| ferredoxin [Cyanothece sp. ATCC 51142]
 gi|171696926|gb|ACB49907.1| 4Fe-4S ferredoxin [Cyanothece sp. ATCC 51142]
          Length = 120

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M+Y +T  CI C  + C   CP       +N   I    C DC        C   CP +
Sbjct: 1  MSYTITNECINC--SRCRSACPTGAITIQDNVFLIDATLCNDCQGYYGTPQCASVCPTN 57



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
                +ECI+C  C   CP  AI
Sbjct: 1  MSYTITNECINCSRCRSACPTGAI 24


>gi|78043263|ref|YP_360108.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995378|gb|ABB14277.1| iron-sulfur cluster-binding protein [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 205

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C    C +VCPV           I+ + C  C  CE  CP  AI
Sbjct: 13 DKCIGC--QTCAKVCPVLAIKIENKKPVINAEMCRGCAACEQRCPQYAI 59



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKE 85
          I  D+CI C  C   CPV AIK + +  +     IN+E          +  
Sbjct: 10 IDYDKCIGCQTCAKVCPVLAIKIENKKPV-----INAEMCRGCAACEQRCP 55


>gi|15899512|ref|NP_344117.1| oxydoreductase, putative [Sulfolobus solfataricus P2]
 gi|13816140|gb|AAK42907.1| Oxydoreductase, putative [Sulfolobus solfataricus P2]
          Length = 293

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 108 YNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 160


>gi|45359027|ref|NP_988584.1| hypothetical protein MMP1464 [Methanococcus maripaludis S2]
 gi|45047902|emb|CAF31020.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 161

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C++C    C + CP +   E ++ ++ + D+C+ CG CE  CP  AIK +
Sbjct: 114 CVMCLV--CTKNCPFEAISESDDTISFNMDKCVLCGHCEEICPAKAIKLE 161



 Score = 40.5 bits (94), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CILC    C+EVCPV            I  ++C+ C  C   CPVDAIK
Sbjct: 36 EICILCN--RCLEVCPVTAISSNFPEVPDID-NKCVYCNTCVETCPVDAIK 83



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAI---KPDTEPGLELWLKIN 70
          N + I+P+ CI C  C   CPV AI    P+        +  N
Sbjct: 29 NKIEINPEICILCNRCLEVCPVTAISSNFPEVPDIDNKCVYCN 71



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 20/74 (27%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE------------------NFLAIHPDECIDCGVC 46
           +   C+ C    CVE CPVD     +                    L  +  +C+ C VC
Sbjct: 63  IDNKCVYCN--TCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVC 120

Query: 47  EPECPVDAIKPDTE 60
              CP +AI    +
Sbjct: 121 TKNCPFEAISESDD 134


>gi|327191030|gb|EGE58084.1| putative NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           CNPAF512]
          Length = 188

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|325958028|ref|YP_004289494.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329460|gb|ADZ08522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 453

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T+V  + C+ CK   C ++CP D   E     + +   +CI CG C   CP  AI  + E
Sbjct: 391 TFVQDKMCMKCKL--CTKICPEDAINENSEGNIVVDDSKCIYCGACSNACPAKAIILERE 448



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V+E+CI C    C E+CP          + +  D+CI C  C   CPV AI
Sbjct: 327 TVSEDCITCG--ICSELCPKGAITLRRGSIDVDMDKCILCEKCAIHCPVSAI 376



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 4/40 (10%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CVE CP +     +         CI CG C+  CP  AI 
Sbjct: 14 CVEECPTEAIRIIDGKAF----SCITCGACKDACPNSAIF 49



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C +VCPV    +G     I   +C  C  C  ECP  A+  + 
Sbjct: 176 CTEC--RICEDVCPVGAIKDG----VIDDTKCTLCLKCVSECPNSAMYTED 220



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +CI C    C + CP    ++ +     +   +C  CGVCE  CPV+ IK + 
Sbjct: 32 SCITCG--ACKDACPNSAIFKNKFGGFVVDRAKCNACGVCEMTCPVNNIKIED 82



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C   DC+EVCPV    E  +        C+ CG C   C V+
Sbjct: 270 CKECSTMDCLEVCPVGTIRESADPDRAVEGFCVSCGKCVQVCDVN 314



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ENC LC    C   CP +      +        C +C +CE  CPV AIK 
Sbjct: 149 ENCTLCG--RCEYYCPTNAIIVDVDS----EGLCTECRICEDVCPVGAIKD 193


>gi|322628726|gb|EFY25512.1| dimethylsulfoxide reductase, B subunit [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
          Length = 137

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 11 LCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + ++  G 
Sbjct: 1  HCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQYNSAKGH 54


>gi|320540447|ref|ZP_08040097.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia
           symbiotica str. Tucson]
 gi|320029378|gb|EFW11407.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia
           symbiotica str. Tucson]
          Length = 176

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI
Sbjct: 57  AERCVACNL--CAVACPVSCISLQKAEQQDGRWYPEFFRINFSRCIFCGLCEEACPTTAI 114

Query: 56  KPDTEPGLELW 66
           +   +  +  +
Sbjct: 115 QLTPDFEMGEF 125


>gi|312134825|ref|YP_004002163.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Caldicellulosiruptor owensensis OL]
 gi|311774876|gb|ADQ04363.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor owensensis OL]
          Length = 593

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + +NC  CK    +  CP     E EN  + I    C  CG+C+  CP  AI+   +  
Sbjct: 537 INQNCSNCKGCMQITGCP--ALKEDENGNIFIDSALCNGCGLCKSFCPYSAIEKVMKDD 593


>gi|294495224|ref|YP_003541717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666223|gb|ADE36072.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 205

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           M +   E CI CK   C +VCP++    +  N    +PD CI CG C   CP DA+  
Sbjct: 158 MAH---ELCIDCK--KCEKVCPMELTVRDIGN----NPD-CIKCGRCVEACPKDALYF 205


>gi|283833325|ref|ZP_06353066.1| putative oxidoreductase, Fe-S subunit [Citrobacter youngae ATCC
           29220]
 gi|291070963|gb|EFE09072.1| putative oxidoreductase, Fe-S subunit [Citrobacter youngae ATCC
           29220]
          Length = 208

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C++VCP+      + +  +A+    CI C  C   CP
Sbjct: 120 ADTCRQCKDPQCMKVCPIGAITWKQEDGCIAVDHKRCIGCSACTTACP 167


>gi|227827015|ref|YP_002828794.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.14.25]
 gi|227458810|gb|ACP37496.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.14.25]
          Length = 612

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C        CP       +    I    CI CG C P CP  AI
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAI 596


>gi|114049025|ref|YP_739575.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|117918948|ref|YP_868140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|113890467|gb|ABI44518.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
 gi|117611280|gb|ABK46734.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 235

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A  I  DT+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTDVAD 164

Query: 64  ELWLKINSEYAT 75
                +NS+ A 
Sbjct: 165 NCDFCLNSKLAK 176


>gi|324111908|gb|EGC05888.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
          Length = 138

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +     C  C+   C  VCPV         + +    CI C  C   CP  A++   + 
Sbjct: 32  AFTTAVACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQE 91

Query: 62  GLELWLKIN 70
                +K +
Sbjct: 92  SQVQAIKCD 100


>gi|320354301|ref|YP_004195640.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122803|gb|ADW18349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 251

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV VCP    Y+      + +   +CI C  C   CP +A   + E
Sbjct: 124 CNQCNEPPCVRVCPTVATYKDKTTGIVVMDSKKCIGCKTCMAACPYNARYFNEE 177


>gi|300936048|ref|ZP_07150995.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 21-1]
 gi|300458774|gb|EFK22267.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 21-1]
          Length = 192

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQSCPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|295689616|ref|YP_003593309.1| NADH-quinone oxidoreductase subunit I [Caulobacter segnis ATCC
           21756]
 gi|295431519|gb|ADG10691.1| NADH-quinone oxidoreductase, chain I [Caulobacter segnis ATCC
           21756]
          Length = 163

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG+C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 62 ERCIACKLCEAVCPAQAITIEAEPRED 88


>gi|238619159|ref|YP_002913984.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.4]
 gi|238380228|gb|ACR41316.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.4]
          Length = 612

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C        CP       +    I    CI CG C P CP  AI
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAI 596


>gi|227873120|ref|ZP_03991412.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
 gi|227841014|gb|EEJ51352.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
          Length = 355

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    C+  CP    Y  E  +A  P++CI C  C   C  +A
Sbjct: 118 CIHCGD--CIPGCPTKAIYWEEGRVAFSPEKCIGCDQCIHACTHNA 161



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)

Query: 36  HPDE---CIDCGVCEPECPVDAIKPDT 59
           +P+    CI CG C P CP  AI  + 
Sbjct: 111 NPETRALCIHCGDCIPGCPTKAIYWEE 137


>gi|91788043|ref|YP_548995.1| RnfABCDGE type electron transport complex subunit B [Polaromonas
           sp. JS666]
 gi|91697268|gb|ABE44097.1| electron transport complex, RnfABCDGE type, B subunit [Polaromonas
           sp. JS666]
          Length = 221

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPD----TEPG 62
           CI C  T C++ CP D        +   I P  C  C +C P CPVD I  +    T  G
Sbjct: 84  CIGC--TLCIKACPTDAIVGSNKMMHTVIEP-YCTGCELCIPVCPVDCISLENVSGTRTG 140

Query: 63  LELWLKINSEYA 74
              W +  ++ A
Sbjct: 141 WSAWSQEAADTA 152



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 26 FYEGENFLAIHPDE-CIDCGVCEPECPVDAI 55
            EG   +AI  +  CI C +C   CP DAI
Sbjct: 69 GTEGPRGVAIIDEAWCIGCTLCIKACPTDAI 99


>gi|86359334|ref|YP_471226.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN 42]
 gi|115502513|sp|Q2K3T7|NUOI2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|86283436|gb|ABC92499.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN
           42]
          Length = 188

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|15676175|ref|NP_273307.1| NADH dehydrogenase subunit I [Neisseria meningitidis MC58]
 gi|59802064|ref|YP_208776.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA 1090]
 gi|121634122|ref|YP_974367.1| NADH dehydrogenase subunit I [Neisseria meningitidis FAM18]
 gi|161870814|ref|YP_001599987.1| NADH dehydrogenase subunit I [Neisseria meningitidis 053442]
 gi|194099639|ref|YP_002002770.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae NCCP11945]
 gi|218767059|ref|YP_002341571.1| NADH dehydrogenase subunit I [Neisseria meningitidis Z2491]
 gi|225077027|ref|ZP_03720226.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens
           NRL30031/H210]
 gi|240014994|ref|ZP_04721907.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI18]
 gi|240017442|ref|ZP_04723982.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA6140]
 gi|240081581|ref|ZP_04726124.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA19]
 gi|240113863|ref|ZP_04728353.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae MS11]
 gi|240116594|ref|ZP_04730656.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID18]
 gi|240118818|ref|ZP_04732880.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID1]
 gi|240122063|ref|ZP_04735025.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID24-1]
 gi|240124357|ref|ZP_04737313.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID332]
 gi|240126569|ref|ZP_04739455.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-92-679]
 gi|240129034|ref|ZP_04741695.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-93-1035]
 gi|241760745|ref|ZP_04758837.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114]
 gi|254494618|ref|ZP_05107789.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291]
 gi|254805706|ref|YP_003083927.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14]
 gi|255067292|ref|ZP_05319147.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256]
 gi|260439645|ref|ZP_05793461.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI2]
 gi|261364357|ref|ZP_05977240.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996]
 gi|261378531|ref|ZP_05983104.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685]
 gi|268685149|ref|ZP_06152011.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-92-679]
 gi|298370371|ref|ZP_06981687.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|75355482|sp|Q5F623|NUOI_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81542192|sp|Q9JQM2|NUOI_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81832764|sp|Q7DDS1|NUOI_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633533|sp|A1KRT1|NUOI_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|7225474|gb|AAF40705.1| NADH dehydrogenase I, I subunit [Neisseria meningitidis MC58]
 gi|59718959|gb|AAW90364.1| putative NADH dehydrogenase I chain I [Neisseria gonorrhoeae FA
           1090]
 gi|120865828|emb|CAM09560.1| NADH dehydrogenase I chain I [Neisseria meningitidis FAM18]
 gi|121051067|emb|CAM07337.1| NADH dehydrogenase I chain I [Neisseria meningitidis Z2491]
 gi|161596367|gb|ABX74027.1| NADH dehydrogenase I chain I [Neisseria meningitidis 053442]
 gi|193934929|gb|ACF30753.1| NADH dehydrogenase I chain I [Neisseria gonorrhoeae NCCP11945]
 gi|224951584|gb|EEG32793.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens
           NRL30031/H210]
 gi|226513658|gb|EEH63003.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291]
 gi|241318926|gb|EER55452.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114]
 gi|254669248|emb|CBA08124.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14]
 gi|254670964|emb|CBA07648.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis
           alpha153]
 gi|254674112|emb|CBA09896.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis
           alpha275]
 gi|255048443|gb|EET43907.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256]
 gi|268625433|gb|EEZ57833.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-92-679]
 gi|269145081|gb|EEZ71499.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685]
 gi|288567621|gb|EFC89181.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996]
 gi|298281831|gb|EFI23320.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|316985179|gb|EFV64131.1| NADH-quinone oxidoreductase subunit 9 [Neisseria meningitidis
           H44/76]
 gi|319411266|emb|CBY91673.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I;
           NDH-1, chain I) [Neisseria meningitidis WUE 2594]
 gi|325129047|gb|EGC51897.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           N1568]
 gi|325131604|gb|EGC54311.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M6190]
 gi|325135054|gb|EGC57682.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M13399]
 gi|325137077|gb|EGC59673.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M0579]
 gi|325139141|gb|EGC61687.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           ES14902]
 gi|325141087|gb|EGC63590.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           CU385]
 gi|325143091|gb|EGC65438.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           961-5945]
 gi|325143161|gb|EGC65507.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           961-5945]
 gi|325145244|gb|EGC67523.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240013]
 gi|325145315|gb|EGC67593.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240013]
 gi|325197536|gb|ADY92992.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           G2136]
 gi|325199454|gb|ADY94909.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           H44/76]
 gi|325202921|gb|ADY98375.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240149]
 gi|325203367|gb|ADY98820.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240355]
 gi|325205336|gb|ADZ00789.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M04-240196]
 gi|325207280|gb|ADZ02732.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 159

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|150017686|ref|YP_001309940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904151|gb|ABR34984.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 260

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++VT+NC  CK   C +VCP +           H  +C  C  C   CP +AI   +E  
Sbjct: 183 FIVTDNCTSCKV--CEKVCPANNIKVNNKPEFSH--KCEVCLACIHHCPQNAIHLKSEKS 238

Query: 63  LELWLKINSEY 73
              ++  N + 
Sbjct: 239 KARFINQNVQL 249


>gi|288559598|ref|YP_003423084.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF
           [Methanobrevibacter ruminantium M1]
 gi|288542308|gb|ADC46192.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF
           [Methanobrevibacter ruminantium M1]
          Length = 367

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E CI C    C E+CP +        GE  + I  ++C+ C VC+  CPVDAIK
Sbjct: 172 VDEEECIYCG--ACAELCPAEAIVVDKATGEESIVIDKEKCVYCLVCKKACPVDAIK 226



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           + C+ CK   C   CP +                  + +  +ECI CG C   CP +AI 
Sbjct: 136 DKCLFCK--KCEAACPRESITIDRKLPNRADLVTGEIEVDEEECIYCGACAELCPAEAIV 193

Query: 57  PDTEPGLE 64
            D   G E
Sbjct: 194 VDKATGEE 201



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    C++VCP +           +    L    D CI CG C   CP +A
Sbjct: 287 EKCGTCG--ACIDVCPCNVLSFPKSTGPGDRGTHLVKEEDYCIHCGACAKVCPNEA 340



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECP 51
           +E CI C    C  VCP D     + F   L I  ++C  CG C   CP
Sbjct: 254 SETCIKCGW--CEGVCPADAATVKQAFKGTLEIDEEKCGTCGACIDVCP 300



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 20/66 (30%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFL-----------AIHPDECIDCGVCEP 48
           E C+ C    C + CPVD           GE  L            I  + CI CG CE 
Sbjct: 208 EKCVYCLV--CKKACPVDAIKAVCRSCSYGEYDLDPAKAAITGNAIIDSETCIKCGWCEG 265

Query: 49  ECPVDA 54
            CP DA
Sbjct: 266 VCPADA 271



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          E  L+     C+ CG+CE  CPV+AI  D    +E
Sbjct: 22 ERVLSFKDHVCVGCGLCEATCPVEAISLDEVAPIE 56


>gi|281358583|ref|ZP_06245062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
 gi|281314931|gb|EFA98965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
          Length = 369

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI      C  +C        E    I   +C+ CG C   CP DAI+P
Sbjct: 198 CIG--SRACARICAHGAPTFSEGKAEIDHAKCVGCGRCIGVCPKDAIQP 244


>gi|212635176|ref|YP_002311701.1| electron transport complex protein RnfB [Shewanella piezotolerans
           WP3]
 gi|226735433|sp|B8CM57|RNFB_SHEPW RecName: Full=Electron transport complex protein rnfB
 gi|212556660|gb|ACJ29114.1| Electron transport complex, RnfABCDGE type, B subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|254449936|ref|ZP_05063373.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 238]
 gi|198264342|gb|EDY88612.1| cytochrome c oxidase accessory protein CcoG [Octadecabacter
           antarcticus 238]
          Length = 441

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCPV     +G+        ECI CG+C   C
Sbjct: 222 DCIDC--MACVNVCPVGIDIRDGQQM------ECITCGLCIDAC 257



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 26/71 (36%)

Query: 17  CVEVCP---VDCFYEGENFLAI-----------HPDE---------CIDCGVCEPECPVD 53
           C+  CP   +      E+ + I           H D          CIDC  C   CPV 
Sbjct: 177 CIYACPWPRIQAAMMDEDTITIGYRSWRGEPRKHSDAITKETPQGDCIDCMACVNVCPVG 236

Query: 54  AIKPDTEPGLE 64
               D   G +
Sbjct: 237 ---IDIRDGQQ 244


>gi|170757405|ref|YP_001780996.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169122617|gb|ACA46453.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAIK 56
           + C+ C    C +VCP++     E  L  H         D C+ CGVC   C  +AIK
Sbjct: 292 DRCVGCG--KCTKVCPMEAIKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAIK 347



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I  D C+ CG C   CP++AIK
Sbjct: 289 IDKDRCVGCGKCTKVCPMEAIK 310


>gi|160938700|ref|ZP_02086052.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438399|gb|EDP16158.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC
           BAA-613]
          Length = 361

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           T+ C+ CK   C  VC  D        + +  D+C  CG+C   CP  A+  +  P  E 
Sbjct: 288 TKKCVSCK--KCETVCCYDARKLTFPEMTVDMDKCRCCGLCLDVCPTGALTAELAPQTEK 345

Query: 66  WLKI 69
            L++
Sbjct: 346 DLEL 349


>gi|153832369|ref|ZP_01985036.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156974556|ref|YP_001445463.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148871398|gb|EDL70261.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156526150|gb|ABU71236.1| hypothetical protein VIBHAR_02274 [Vibrio harveyi ATCC BAA-1116]
          Length = 553

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|82543958|ref|YP_407905.1| hypothetical protein SBO_1458 [Shigella boydii Sb227]
 gi|81245369|gb|ABB66077.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
          Length = 225

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|331268947|ref|YP_004395439.1| polyferredoxin [Clostridium botulinum BKT015925]
 gi|329125497|gb|AEB75442.1| polyferredoxin [Clostridium botulinum BKT015925]
          Length = 288

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    CV+ CP +      N   I   +C++CG+C  +CP  AI+
Sbjct: 216 CIGCGL--CVKACPKEAIKLENNLPVIDYSKCVNCGLCAMKCPTKAIQ 261



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  CV  C  D     +    ++ D C+ CG C   CP   I+
Sbjct: 144 GYGSCVSACKFDAIEIVDGIAKVNKDNCVACGACVSTCPKGVIE 187



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAI---------------HPDECIDCGVCE 47
           V  +NC+ C    CV  CP           L I                   CI CG+C 
Sbjct: 166 VNKDNCVACG--ACVSTCPKGVIELVPQKQLVIVSCNSHDRGLDVKNTCSTGCIGCGLCV 223

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP +AIK +    +  + K
Sbjct: 224 KACPKEAIKLENNLPVIDYSK 244


>gi|315923092|ref|ZP_07919332.1| ferredoxin [Bacteroides sp. D2]
 gi|313696967|gb|EFS33802.1| ferredoxin [Bacteroides sp. D2]
          Length = 514

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 417 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 476

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 477 CPARPFRAIYIEGNPVQKE 495



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 391 DCTVCGD-----VCPNGAILPINVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 445

Query: 53  DAI 55
            A+
Sbjct: 446 QAV 448



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T  C  C    C   C   C    E+  AI    C+DC  C   C   A
Sbjct: 223 TAKCNGCGL--CATKCKAACINSKEH--AIDYSRCVDCFNCLGACKQKA 267


>gi|304314189|ref|YP_003849336.1| indolepyruvate oxidoreductase, subunit alpha [Methanothermobacter
           marburgensis str. Marburg]
 gi|313104116|sp|P80910|IORA_METTM RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|302587648|gb|ADL58023.1| indolepyruvate oxidoreductase, subunit alpha [Methanothermobacter
           marburgensis str. Marburg]
          Length = 618

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  E C LC        CP     E +  + I P  C  C +C   CP  AIKP+
Sbjct: 563 VDEEKCDLCLECLNELACP--AIVEEDGRVFIDPLYCRGCTICLQICPAGAIKPE 615


>gi|227498571|ref|ZP_03928715.1| nitroreductase [Acidaminococcus sp. D21]
 gi|226904027|gb|EEH89945.1| nitroreductase [Acidaminococcus sp. D21]
          Length = 270

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 16/100 (16%)

Query: 1  MTYVVT---ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDA- 54
          M  ++T   E C  C    C +VCP  C  E   E  + I+   C+ CG C   CP  A 
Sbjct: 1  MAGIITIDKEKCTRCG--TCAKVCP-SCILEMDTEGPVCINDLSCMSCGHCVAVCPTGAL 57

Query: 55 -----IKPDTEPGLELWLKINS--EYATQWPNITTKKESL 87
                K + +P     L  ++  E+  Q  +I   ++ L
Sbjct: 58 DNSRCPKAEMDPITRPMLDPDTALEFLRQRRSIRNFRDEL 97


>gi|242278400|ref|YP_002990529.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio salexigens DSM 2638]
 gi|242121294|gb|ACS78990.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio salexigens DSM 2638]
          Length = 704

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 15  TDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
             CV+VC  D     E+ +  +  + C+ CG C   CP  AI+
Sbjct: 142 GSCVKVCGFDAIRLNEDGVPVVDMNACVSCGKCAEVCPTGAIR 184


>gi|218961542|ref|YP_001741317.1| putative ferredoxin, 4Fe-4S; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730199|emb|CAO81111.1| putative ferredoxin, 4Fe-4S; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 184

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEP-------ECPVDAIK 56
           V  + CI CK   C+  CP            I   +C  CG+C          CPV A+ 
Sbjct: 123 VNKDLCIGCKL--CIRYCPEGAISIKNGKAVIDTTKCTACGICSDGNNKNFSGCPVGAVF 180


>gi|84490254|ref|YP_448486.1| flavoprotein [Methanosphaera stadtmanae DSM 3091]
 gi|84373573|gb|ABC57843.1| predicted flavoprotein [Methanosphaera stadtmanae DSM 3091]
          Length = 235

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y+  E C  C        CP +     E    I+  +CI C  C+  CP  AI  +T+ 
Sbjct: 141 PYIDKEKCKKCTPCPAQRSCPTNAIIPPE----INTIKCISCKKCKETCPYHAI--NTDK 194

Query: 62  GLELWL-KINSEYATQWPNI 80
            ++L++ +I+++   +   I
Sbjct: 195 QIKLYIRQIDAQNTKKLETI 214


>gi|150388820|ref|YP_001318869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149948682|gb|ABR47210.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 360

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C +C+       CP +     ++ + I  + C  CG+C+  CP  AI
Sbjct: 30 AEPCRICQDH-----CPSEAISLTKSCVEIDEEVCKGCGICKSTCPSQAI 74


>gi|94985024|ref|YP_604388.1| NADH-quinone oxidoreductase, chain I [Deinococcus geothermalis DSM
           11300]
 gi|115502526|sp|Q1IZW5|NUOI_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|94555305|gb|ABF45219.1| NADH dehydrogenase subunit I [Deinococcus geothermalis DSM 11300]
          Length = 179

 Score = 50.2 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C  VCP    Y              GE +     I+   CI CG+CE  C
Sbjct: 52  EKCIGC--SLCAAVCPAYAIYVEAAENDPLNPTSPGERYAKVYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  +  +
Sbjct: 110 PTGAVVLGNEFEMADY 125


>gi|332558535|ref|ZP_08412857.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
 gi|332276247|gb|EGJ21562.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
          Length = 164

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E  +         I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAACPVDCIDVVKAETPDGRWYPESFRINFARCIFCGYCEEACPTSAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  +
Sbjct: 107 LTPDVELADY 116


>gi|284997007|ref|YP_003418774.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Sulfolobus islandicus L.D.8.5]
 gi|284444902|gb|ADB86404.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Sulfolobus islandicus L.D.8.5]
          Length = 612

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C        CP       +    I    CI CG C P CP  AI
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAI 596


>gi|253681199|ref|ZP_04861997.1| hydrogen dehydrogenase [Clostridium botulinum D str. 1873]
 gi|253562437|gb|EES91888.1| hydrogen dehydrogenase [Clostridium botulinum D str. 1873]
          Length = 448

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 17  CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C + CP D     +  N   I  D+C DCG C   CP  +I    E
Sbjct: 94  CQKSCPFDAILVDKNTNSTYISLDKCTDCGFCVNACPTGSILDKVE 139


>gi|229584184|ref|YP_002842685.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.27]
 gi|228019233|gb|ACP54640.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.27]
          Length = 612

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C        CP       +    I    CI CG C P CP  AI
Sbjct: 549 EKCTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAI 596


>gi|198273884|ref|ZP_03206416.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM
          17135]
 gi|198272962|gb|EDY97231.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM
          17135]
          Length = 399

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C    C + CP         +  + P  C  CG C   CP +A
Sbjct: 14 DACTQCG--ICADSCPFGAIQF-NEYPEVDPYSCRLCGTCVQACPAEA 58



 Score = 41.3 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELW 66
          D C  CG+C   CP  AI+ +  P ++ +
Sbjct: 14 DACTQCGICADSCPFGAIQFNEYPEVDPY 42


>gi|189465837|ref|ZP_03014622.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM
           17393]
 gi|189434101|gb|EDV03086.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM
           17393]
          Length = 373

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGL 63
           TENCI C    CV+ C  D  +        I   +C+ CG C   C  D AI  D +   
Sbjct: 193 TENCIGCN--ICVKHCAHDAVHLNAGRKAEIDYAKCVGCGQCVALCQYDGAIMGDEDTSE 250

Query: 64  ELWLKINSEYA 74
            L  KI +EY+
Sbjct: 251 RLNYKI-AEYS 260


>gi|167625038|ref|YP_001675332.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355060|gb|ABZ77673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 190

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
           +C  C++  CV+VCP    Y  ++ +  I+  +C+ C  C   CP     I P+T    +
Sbjct: 59  SCEQCENAPCVKVCPTGAAYVNDDGIVSINEKKCVGCLYCVAACPYKVRFINPETRVPDK 118


>gi|91223727|ref|ZP_01258991.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01]
 gi|91191219|gb|EAS77484.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01]
          Length = 553

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDRTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 420 CTLC--MSCVAVCPTRALHTDGRSPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDRTGHRIEIN 213


>gi|78044751|ref|YP_359335.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996866|gb|ABB15765.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 198

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + V   C+ C+   C+ +CP    +  EN  + ++ D C+ C  C   CP  A     + 
Sbjct: 54  HFVPTICMHCEEPACLTICPSQATFRDENGSILVNYDTCLGCKACMAACPYGARYVYDKN 113

Query: 62  GLELWLKINSEYATQ 76
            +    +I+ E +  
Sbjct: 114 DVAKNREIHGELSQH 128


>gi|331664457|ref|ZP_08365363.1| putative electron transport protein YgfS [Escherichia coli TA143]
 gi|331058388|gb|EGI30369.1| putative electron transport protein YgfS [Escherichia coli TA143]
          Length = 151

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 56  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 110


>gi|291284206|ref|YP_003501024.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. CB9615]
 gi|293416139|ref|ZP_06658779.1| electron transporter ygfS [Escherichia coli B185]
 gi|290764079|gb|ADD58040.1| Putative electron transport protein ygfS [Escherichia coli O55:H7
           str. CB9615]
 gi|291432328|gb|EFF05310.1| electron transporter ygfS [Escherichia coli B185]
 gi|320662090|gb|EFX29491.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 162

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|254488246|ref|ZP_05101451.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101]
 gi|214045115|gb|EEB85753.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101]
          Length = 164

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|198284338|ref|YP_002220659.1| NADH dehydrogenase subunit I [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218668010|ref|YP_002427000.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248859|gb|ACH84452.1| NADH-quinone oxidoreductase, chain I [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520223|gb|ACK80809.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 163

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDVRSDGTRRTTRYDIDLSKCIFCGLCEESCPVDSI 118



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 62 ERCIACKLCEAVCPALAITIESD 84


>gi|116075769|ref|ZP_01473028.1| hypothetical protein RS9916_39926 [Synechococcus sp. RS9916]
 gi|116067084|gb|EAU72839.1| hypothetical protein RS9916_39926 [Synechococcus sp. RS9916]
          Length = 352

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C       C+ VCP +      + + +    C  CG C P CP+  I        +  
Sbjct: 97  QQCPTSCPRPCMRVCPAEAIPSLPSTVGVDAARCYGCGRCLPACPLGLIVAHD--HQQSR 154

Query: 67  LKINSEYATQWPNITTKKESLPSAAKM 93
             + S  AT  P+      +     + 
Sbjct: 155 EDLGSLLATLTPDAVEVHTAPGRGLEF 181


>gi|304313915|ref|YP_003849062.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter marburgensis str. Marburg]
 gi|1890207|emb|CAA61210.1| tungsten formylmethanofuran dehydrogenase [Methanothermobacter
           thermautotrophicus]
 gi|302587374|gb|ADL57749.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter marburgensis str. Marburg]
          Length = 349

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 12/64 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP D                  + I  D CI CG+CE  CPVDAI+
Sbjct: 113 ETCIQCK--ACETACPQDAITITRELPERKDLITGEIEIDKDTCIYCGMCEEMCPVDAIE 170

Query: 57  PDTE 60
            + +
Sbjct: 171 IEHQ 174



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 18/67 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           V  + C+ C    C  +CPVD                   E      I P+ C++CG C+
Sbjct: 189 VDEDKCVHCG--ICKRICPVDAIMQVCRICPYGEYEIKVPEVTGTSYIDPELCVNCGWCQ 246

Query: 48  PECPVDA 54
             CPVDA
Sbjct: 247 EICPVDA 253



 Score = 42.1 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C+   CV  CP +           E    L      CI CG CE  CPV+AI+
Sbjct: 269 DTCQACE--TCVMACPCNVLSFPKPEKSGEKPTKLYKDERFCIYCGACERSCPVNAIE 324



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y+  E C+ C    C E+CPVD       +EGE  L I  D C  C  C   CP + + 
Sbjct: 232 SYIDPELCVNCGW--CQEICPVDAATVTKPFEGE--LIIDQDTCQACETCVMACPCNVLS 287

Query: 57  PDTEP 61
                
Sbjct: 288 FPKPE 292



 Score = 40.1 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-----------IHPDECIDCGVCEPECPVDAI 55
           + CI C    C E+CPVD         +           +  D+C+ CG+C+  CPVDAI
Sbjct: 152 DTCIYCG--MCEEMCPVDAIEIEHQIPSSSSPTVATDINVDEDKCVHCGICKRICPVDAI 209



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 17/72 (23%)

Query: 9   CILCKHTDCVEVCPVDC---------FYEGENF------LAIHPDECIDCGVCEPECPVD 53
           C+LC    C  +CP              E   +        I  + CI C  CE  CP D
Sbjct: 71  CVLCG--MCSSICPFQALDLQIDGTSIKELAEYPKILKSAEIDDETCIQCKACETACPQD 128

Query: 54  AIKPDTEPGLEL 65
           AI    E     
Sbjct: 129 AITITRELPERK 140



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVD 53
          + ++C+      C E+CPV               + E+ + I  ++C+ CG+C   CP  
Sbjct: 25 IFQDCLCAVCGLCGEICPVSAIEVNPTGAMVRTEQDESKILIDENKCVLCGMCSSICPFQ 84

Query: 54 A 54
          A
Sbjct: 85 A 85


>gi|21674083|ref|NP_662148.1| ferredoxin, 4Fe-4S [Chlorobium tepidum TLS]
 gi|25452953|sp|Q8KCZ7|FER2_CHLTE RecName: Full=Ferredoxin-2; AltName: Full=Ferredoxin II;
          Short=FdII
 gi|21647237|gb|AAM72490.1| ferredoxin, 4Fe-4S [Chlorobium tepidum TLS]
          Length = 62

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + +T+ C  C    C   CPV     G++   I  + C+DC        C   CPVD 
Sbjct: 1  MAHRITDECTYC--AACEPECPVSAISAGDSIYVIDENVCVDCIGYHDEPACVAVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|325959692|ref|YP_004291158.1| NiL domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331124|gb|ADZ10186.1| NIL domain-containing protein [Methanobacterium sp. AL-21]
          Length = 128

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIK 56
           E CI C    CV +CPV      +++     D ECI C +C   CP  AIK
Sbjct: 77  EMCIDCG--ACVSLCPVHAIIVEDDWTVEVKDKECIGCKLCSYSCPTKAIK 125



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
            + CIDCG C   CPV AI  + +
Sbjct: 75 DEEMCIDCGACVSLCPVHAIIVEDD 99


>gi|320668652|gb|EFX35457.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. LSU-61]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 624

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C  + C  +CPV+      +    I   +CI CG C   C   AI
Sbjct: 576 CKGC--SKCSRICPVNAISGKVKEPYVIDQSKCIKCGACVGSCAFHAI 621


>gi|302391750|ref|YP_003827570.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203827|gb|ADL12505.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 159

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   C+ C+   C+EVCPVD  Y       + +  D C  C +C   CP   +  + E  
Sbjct: 49  IPMMCMHCEDAACMEVCPVDAIYRDVETGAVLVDHDRCFGCKLCVSACPFGNVTYNLETK 108

Query: 63  L 63
            
Sbjct: 109 Q 109


>gi|296132680|ref|YP_003639927.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermincola sp. JR]
 gi|296031258|gb|ADG82026.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermincola potens JR]
          Length = 560

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF----LA-----IHPDECIDCGVCEPECPV 52
            YV    C++C    C   CP        +     L      ++P  C  CG+C  ECP 
Sbjct: 481 PYVDASKCVVCL--TCYRCCPHKAITIAYDRQFNNLYRSAAQVNPLACRRCGICAAECPA 538

Query: 53  DAIKPDTEPGLELWLKINS 71
            AI       L++  ++++
Sbjct: 539 KAIHLPGYTDLQILAQLDA 557


>gi|254283716|ref|ZP_04958684.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B]
 gi|219679919|gb|EED36268.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B]
          Length = 175

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG+CE  CP +AI+
Sbjct: 53  ERCVACNL--CAVACPVDCIALQQATKEDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQ 110


>gi|206901296|ref|YP_002251606.1| hypothetical protein DICTH_1795 [Dictyoglomus thermophilum H-6-12]
 gi|206740399|gb|ACI19457.1| conserved protein [Dictyoglomus thermophilum H-6-12]
          Length = 378

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ +  CI C    C   CP          + I   +CI C  C   CP  AI+ +
Sbjct: 315 VIEDKKCIKC--RICENSCPNKAITYTPEGMIIDYKKCISCFCCHELCPQKAIRLE 368


>gi|197118878|ref|YP_002139305.1| aldo/keto reductase family oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197088238|gb|ACH39509.1| oxidoreductase, aldo/keto reductase family [Geobacter bemidjiensis
           Bem]
          Length = 316

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C  C    CV  C  D     +    +   ECI CG C   CP
Sbjct: 269 CKGCG--ACVPACTNDALRLVDGKAVVDEAECILCGYCGAACP 309



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIK 56
             LAI    C  CG C P C  DA++
Sbjct: 260 RKLAIMEAFCKGCGACVPACTNDALR 285


>gi|158522287|ref|YP_001530157.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfococcus oleovorans Hxd3]
 gi|158511113|gb|ABW68080.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfococcus oleovorans Hxd3]
          Length = 776

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 7/49 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECP 51
           NC  C    CV  CP       E         +    CI CG C   CP
Sbjct: 716 NCRDCG--ICVTACPQSAISRAEKPDSGFAYEVDETLCIGCGFCAGACP 762



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPG 62
           C DCG+C   CP  AI    +P 
Sbjct: 717 CRDCGICVTACPQSAISRAEKPD 739


>gi|126700799|ref|YP_001089696.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile 630]
 gi|254976768|ref|ZP_05273240.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-66c26]
 gi|255094153|ref|ZP_05323631.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CIP 107932]
 gi|255102322|ref|ZP_05331299.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-63q42]
 gi|255308215|ref|ZP_05352386.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile ATCC 43255]
 gi|255315904|ref|ZP_05357487.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-76w55]
 gi|255518564|ref|ZP_05386240.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-97b34]
 gi|255651684|ref|ZP_05398586.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-37x79]
 gi|260684718|ref|YP_003216003.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CD196]
 gi|260688376|ref|YP_003219510.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile R20291]
 gi|306521483|ref|ZP_07407830.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-32g58]
 gi|115252236|emb|CAJ70076.1| Dihydroorotate dehydrogenase, catalytic subunit [Clostridium
           difficile]
 gi|260210881|emb|CBA66039.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CD196]
 gi|260214393|emb|CBE06800.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile R20291]
          Length = 369

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           VV +N CI CK   CV  C  +   E  + L I  D+C  CG+C   CP  A
Sbjct: 308 VVDDNKCIKCKQ--CVTSCVYEAL-EVTDKLNIDADKCFGCGLCVTRCPKGA 356


>gi|21231826|ref|NP_637743.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC
          33913]
 gi|66768048|ref|YP_242810.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991179|ref|YP_001903189.1| Putative ferredoxin [Xanthomonas campestris pv. campestris str.
          B100]
 gi|21113541|gb|AAM41667.1| ferredoxin [Xanthomonas campestris pv. campestris str. ATCC
          33913]
 gi|66573380|gb|AAY48790.1| ferredoxin [Xanthomonas campestris pv. campestris str. 8004]
 gi|167732939|emb|CAP51135.1| Putative ferredoxin [Xanthomonas campestris pv. campestris]
          Length = 94

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINELCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 58

Query: 55 IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  ++   P
Sbjct: 59 IDPDPAIPETHDQLLAKLIQLQRDHPELYEQEPPAP 94


>gi|11466496|ref|NP_044745.1| NADH dehydrogenase subunit 8 [Reclinomonas americana]
 gi|6225784|sp|O21233|NDUS8_RECAM RecName: Full=NADH-ubiquinone oxidoreductase subunit 8
 gi|2258326|gb|AAD11860.1| NADH dehydrogenase subunit 8 [Reclinomonas americana]
          Length = 162

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIESEPRIDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  ++EP
Sbjct: 61 ERCIACKLCEAICPAQAITIESEP 84



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123


>gi|322830647|gb|EFZ33604.1| ribonuclease L inhibitor, putative [Trypanosoma cruzi]
          Length = 647

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 2  TYVVTENCILCK-HTDCVEVCPVD-----CFYEGENFLAIHP---DECIDCGVCEPECPV 52
            V  + C   K   +C + CPV+     C  E +    I     + CI CG+C  +CP 
Sbjct: 18 AVVNADRCKPSKCSLECSKCCPVNLQGKLCI-EVQKKSVISKISEELCIGCGLCVKKCPY 76

Query: 53 DAIK 56
           AI+
Sbjct: 77 GAIQ 80


>gi|262382027|ref|ZP_06075165.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          2_1_33B]
 gi|262297204|gb|EEY85134.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
          2_1_33B]
          Length = 301

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV  CPV      +  +      C  CG C   CP  A++
Sbjct: 52 CIGCG--ACVNACPVGALTLTQAGIVTDRSLCRTCGRCAEVCPTLAME 97



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C               L     +CI CG C   CPV A
Sbjct: 26 CPLACVWCHNPEGISPRAEKLYTRK-KCIGCGACVNACPVGA 66


>gi|255526495|ref|ZP_05393405.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          carboxidivorans P7]
 gi|296185864|ref|ZP_06854270.1| radical SAM domain protein [Clostridium carboxidivorans P7]
 gi|255509814|gb|EET86144.1| (Formate-C-acetyltransferase)-activating enzyme [Clostridium
          carboxidivorans P7]
 gi|296049532|gb|EFG88960.1| radical SAM domain protein [Clostridium carboxidivorans P7]
          Length = 278

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          +CI C   +CV+ CP       E  +  +P++C DCG+C   C
Sbjct: 44 SCIQCG--ECVDNCPYGAISLVEKSVIWNPEKCEDCGLCVKIC 84



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)

Query: 36 HPDE---CIDCGVCEPECPVDAI 55
          +P+    CI CG C   CP  AI
Sbjct: 38 NPETIKSCIQCGECVDNCPYGAI 60


>gi|225569293|ref|ZP_03778318.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM
           15053]
 gi|225162092|gb|EEG74711.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM
           15053]
          Length = 374

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    C  +C  D     +    I   +C+ CG C   CP DA+ P
Sbjct: 194 EYCVGCG--ACQRICAHDAPVITDGKAYIDLHKCVGCGRCIGACPKDAVHP 242


>gi|224368764|ref|YP_002602925.1| iron-sulfur binding hydrogenase [Desulfobacterium autotrophicum
          HRM2]
 gi|223691480|gb|ACN14763.1| iron-sulfur binding hydrogenase [Desulfobacterium autotrophicum
          HRM2]
          Length = 548

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          +C  C    CV+VCP       +    +  D CI  G C   CP + I P T P
Sbjct: 17 DCNGCG--ACVKVCPTKAIRIKDGKSLLLVDNCIGGGECVTVCPQECITPTTAP 68



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
          +++    +C  CG C   CP  AI+
Sbjct: 10 YVSFDSRDCNGCGACVKVCPTKAIR 34


>gi|190893221|ref|YP_001979763.1| NADH-ubiquinone oxidoreductase [Rhizobium etli CIAT 652]
 gi|190698500|gb|ACE92585.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           CIAT 652]
          Length = 188

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|166032525|ref|ZP_02235354.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC
           27755]
 gi|166026882|gb|EDR45639.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V  ++CI CK   C+    CP       +  + I    C  C +C   CPV AI
Sbjct: 550 HVDQDSCIGCK--KCIRDLGCP--AIVMNDGKICIDASMCTGCHLCSQVCPVCAI 600


>gi|218780081|ref|YP_002431399.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761465|gb|ACL03931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 269

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + E C LC    CV++CP+      ++ +      CI C  C   CPV+A + +     
Sbjct: 192 TIEETCTLCGD--CVDMCPMGAITIEDDAVKTDNMACILCCACIKGCPVNAREVNNPDIA 249

Query: 64  ELW 66
           +++
Sbjct: 250 KIF 252


>gi|170724640|ref|YP_001758666.1| radical SAM domain-containing protein [Shewanella woodyi ATCC
          51908]
 gi|169809987|gb|ACA84571.1| Radical SAM domain protein [Shewanella woodyi ATCC 51908]
          Length = 292

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECP 51
           Y + + C  C    CV  CPV+        EG++ +    D C  C +C   CP
Sbjct: 40 PYTI-DMCNSCGD--CVATCPVNALSLTSSKEGKSKIVWDSDLCTQCDICLSTCP 91


>gi|34557166|ref|NP_906981.1| molybdopterin oxidoreductase [Wolinella succinogenes DSM 1740]
 gi|34482882|emb|CAE09881.1| MOLYBDOPTERIN OXIDOREDUCTASE [Wolinella succinogenes]
          Length = 232

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    CV  CP    Y+ +       + D+CI C  C    P   I  +++     W
Sbjct: 59  CNHCDDAPCVRACPTGAMYKDKESGMTLHNADKCIGCKSCMLADPYHVIYYNSKQPHYKW 118

Query: 67  L 67
            
Sbjct: 119 T 119


>gi|193064953|ref|ZP_03046029.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|194430516|ref|ZP_03062989.1| iron-sulfur cluster-binding protein [Escherichia coli B171]
 gi|194440073|ref|ZP_03072128.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|301027651|ref|ZP_07190969.1| thiosulfate reductase electron transport protein phsb
          [Escherichia coli MS 196-1]
 gi|192927440|gb|EDV82058.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|194411442|gb|EDX27791.1| iron-sulfur cluster-binding protein [Escherichia coli B171]
 gi|194420995|gb|EDX37027.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|299879222|gb|EFI87433.1| thiosulfate reductase electron transport protein phsb
          [Escherichia coli MS 196-1]
 gi|323152823|gb|EFZ39093.1| hypothetical protein ECEPECA14_5180 [Escherichia coli EPECa14]
 gi|323163480|gb|EFZ49306.1| hypothetical protein ECE128010_0331 [Escherichia coli E128010]
 gi|323937274|gb|EGB33553.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323962162|gb|EGB57757.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323973950|gb|EGB69122.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|16131444|ref|NP_418030.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89110439|ref|AP_004219.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. W3110]
 gi|170018196|ref|YP_001723150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Escherichia coli ATCC 8739]
 gi|170083082|ref|YP_001732402.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194435589|ref|ZP_03067692.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|238902663|ref|YP_002928459.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli BW2952]
 gi|253771592|ref|YP_003034423.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038761|ref|ZP_04872817.1| hydrogenase [Escherichia sp. 1_1_43]
 gi|254163497|ref|YP_003046605.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli B str. REL606]
 gi|256025698|ref|ZP_05439563.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia sp. 4_1_40B]
 gi|300950332|ref|ZP_07164264.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|300957613|ref|ZP_07169813.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301017831|ref|ZP_07182476.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301645991|ref|ZP_07245897.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|307140265|ref|ZP_07499621.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli H736]
 gi|3025305|sp|P56256|YSAA_ECOLI RecName: Full=Putative electron transport protein ysaA
 gi|2367245|gb|AAC76597.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676470|dbj|BAE77720.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K12 substr. W3110]
 gi|169753124|gb|ACA75823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|169890917|gb|ACB04624.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli str. K-12 substr. DH10B]
 gi|194425132|gb|EDX41116.1| 4Fe-4S binding domain protein [Escherichia coli 101-1]
 gi|226839267|gb|EEH71290.1| hydrogenase [Escherichia sp. 1_1_43]
 gi|238862459|gb|ACR64457.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli BW2952]
 gi|242379091|emb|CAQ33893.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli BL21(DE3)]
 gi|253322636|gb|ACT27238.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975398|gb|ACT41069.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli B str. REL606]
 gi|253979554|gb|ACT45224.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli BL21(DE3)]
 gi|260447409|gb|ACX37831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|299882652|gb|EFI90863.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|300315650|gb|EFJ65434.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300450331|gb|EFK13951.1| 4Fe-4S binding domain protein [Escherichia coli MS 116-1]
 gi|301075743|gb|EFK90549.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|309703976|emb|CBJ03319.1| putative electron-transport protein [Escherichia coli ETEC H10407]
 gi|315138151|dbj|BAJ45310.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli DH1]
 gi|315618387|gb|EFU98974.1| iron-sulfur protein [Escherichia coli 3431]
 gi|323959390|gb|EGB55050.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971335|gb|EGB66577.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 157

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|330860328|emb|CBX70641.1| NADH-quinone oxidoreductase subunit I [Yersinia enterocolitica
           W22703]
          Length = 137

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|330446736|ref|ZP_08310388.1| formate dehydrogenase, beta subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490927|dbj|GAA04885.1| formate dehydrogenase, beta subunit [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 290

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C+ C    C++ CP  D   + EN +   + ++C+ CG C   CP D
Sbjct: 99  SCMHCSDPGCLKACPEPDAIVQYENGVVDFNSEKCVGCGYCIAGCPFD 146


>gi|323492677|ref|ZP_08097821.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323313052|gb|EGA66172.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 554

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 174 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 233

Query: 56  KPDTEPGLE 64
                   E
Sbjct: 234 HYALPNPQE 242



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+C   CP
Sbjct: 420 DCTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCTKACP 463



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 167 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 214


>gi|298376250|ref|ZP_06986206.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267287|gb|EFI08944.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 295

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          V   CI C    C  +CP       ++F   +   C+ C  CE  CP +AIK 
Sbjct: 45 VKNKCIGCG--RCEAICPRGNIAIQDHFPVFNRQACVACKACERICPQNAIKF 95


>gi|295096018|emb|CBK85108.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ E NCI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 111 VIDEANCIGC--TKCIQACPVDAIVGATRAMHTVVADLCTGCNLCVAPCPTQCIE 163



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 18  VEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAI 55
           V+  PVD   + +        I    CI C  C   CPVDAI
Sbjct: 91  VDPQPVDGDEQAQEPVRALAVIDEANCIGCTKCIQACPVDAI 132


>gi|294141107|ref|YP_003557085.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
 gi|293327576|dbj|BAJ02307.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
          Length = 189

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGAGKLMHTVITDYCTGCDLCVEPCPVDCI 159



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+T+ C  C    CVE CPVDC 
Sbjct: 136 MHTVITDYCTGCDL--CVEPCPVDCI 159


>gi|224827263|ref|ZP_03700357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
          nitroferrum 2002]
 gi|224600552|gb|EEG06741.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Lutiella
          nitroferrum 2002]
          Length = 83

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLMITDECINCDV--CEPECPNNAISQGEEIYEIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPLD 62



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP +AI    E
Sbjct: 7  DECINCDVCEPECPNNAISQGEE 29


>gi|213620807|ref|ZP_03373590.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 232

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|150401779|ref|YP_001325545.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014482|gb|ABR56933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 502

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+LC    CV+ CP D     E   F  I+ D CI CG C   CP +AI
Sbjct: 338 CVLCG--ICVKECPEDAIEIKELPKFEVINDDNCIACGTCSTVCPNNAI 384



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 15/73 (20%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECID-----CGVCEPECPVDAIKP 57
           Y   E+C+LC    CV++CP        N + I+ + CID     CG+C  ECP DAI+ 
Sbjct: 306 YYNPEDCLLCNV--CVKICP--------NEVRINKETCIDGGCVLCGICVKECPEDAIEI 355

Query: 58  DTEPGLELWLKIN 70
              P  E+    N
Sbjct: 356 KELPKFEVINDDN 368



 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 7  ENCILCKH---TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C  C     + C+ VCP +     +N        CI CG+C   CP +AIK
Sbjct: 13 DKCKKCSFEQESKCMNVCPTNAIKLIDNKAF----SCITCGMCAKNCPNNAIK 61



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           CI C    C + CP +     +  +  +P++C+ C VC   CP +
Sbjct: 283 CINCGL--CADKCPNNALKLVDGKIYYNPEDCLLCNVCVKICPNE 325



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C  C    C+ +CP +   E E       D C  C +C+  CPVDAI
Sbjct: 194 AEKCRDCG--KCIFLCPKNTILEKEEV-----DGCTGCNICKDYCPVDAI 236



 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPV 52
          +CI C    C + CP +   + E     +    C  CG CE  CPV
Sbjct: 44 SCITCG--MCAKNCPNNAIKKNEFGGYYVDRVRCNGCGTCEKVCPV 87



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C ++CP     EG+    I+ ++C  C  C   CP  AI
Sbjct: 448 CVFCGL--CNKICPQQAIDEGK----INLNDCEYCSACVNICPAHAI 488



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C    C + CPVD   +G     ++ ++CI C  C  +CP DA+K +
Sbjct: 219 DGCTGCN--ICKDYCPVDAIDKGA----VNYNKCILCNNCIIKCPKDALKIE 264


>gi|117621436|ref|YP_857087.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562843|gb|ABK39791.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 336

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   E CI C    CV+ C    VDC             +CI CG C   CP  A     
Sbjct: 174 HFNAERCIGCG--ACVKACSHHAVDCLAIKHGKAVKEESKCIGCGECVLACPTLA--WQR 229

Query: 60  EPGLELWLKINSEYATQWP 78
           +P     +K+    + + P
Sbjct: 230 DPKQLYMVKLGGRTSKKTP 248



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP DC           G   +  + + CI CG C   C   A+
Sbjct: 150 IAGCPNDCAKANMADFGILGIAKIHFNAERCIGCGACVKACSHHAV 195


>gi|70607958|ref|YP_256828.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Sulfolobus acidocaldarius DSM 639]
 gi|68568606|gb|AAY81535.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
          [Sulfolobus acidocaldarius DSM 639]
          Length = 336

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 18 VEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          + VCP +   + E  +  I  D CI CG C   CP +A+K
Sbjct: 1  MNVCPANAITKNEMGIVRIIEDNCIGCGFCTWACPYEALK 40



 Score = 41.7 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 13/59 (22%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC------IDCG--VCEPECPVDA 54
          ++ +NCI C    C   CP +      + +     +C      I  G   C   CP  A
Sbjct: 19 IIEDNCIGCGF--CTWACPYEALKITPSGIM---SKCHLCYNRIGSGLPYCVEACPTGA 72


>gi|15831591|ref|NP_310364.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. Sakai]
 gi|74312045|ref|YP_310464.1| electron transport complex protein RnfB [Shigella sonnei Ss046]
 gi|91210841|ref|YP_540827.1| electron transport complex protein RnfB [Escherichia coli UTI89]
 gi|117623814|ref|YP_852727.1| electron transport complex protein RnfB [Escherichia coli APEC O1]
 gi|157157455|ref|YP_001462917.1| electron transport complex protein RnfB [Escherichia coli E24377A]
 gi|168750558|ref|ZP_02775580.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168757456|ref|ZP_02782463.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168763668|ref|ZP_02788675.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168771170|ref|ZP_02796177.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168775858|ref|ZP_02800865.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168783451|ref|ZP_02808458.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168789465|ref|ZP_02814472.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|168800888|ref|ZP_02825895.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|170682878|ref|YP_001743626.1| electron transport complex protein RnfB [Escherichia coli SMS-3-5]
 gi|191165916|ref|ZP_03027753.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B7A]
 gi|191173438|ref|ZP_03034966.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli F11]
 gi|193064973|ref|ZP_03046049.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E22]
 gi|194425888|ref|ZP_03058444.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B171]
 gi|195939017|ref|ZP_03084399.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. EC4024]
 gi|208810550|ref|ZP_03252426.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208816778|ref|ZP_03257898.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820538|ref|ZP_03260858.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209397589|ref|YP_002270698.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209918941|ref|YP_002293025.1| electron transport complex protein RnfB [Escherichia coli SE11]
 gi|217328786|ref|ZP_03444867.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218558499|ref|YP_002391412.1| electron transport complex protein RnfB [Escherichia coli S88]
 gi|218695191|ref|YP_002402858.1| electron transport complex protein RnfB [Escherichia coli 55989]
 gi|218699804|ref|YP_002407433.1| electron transport complex protein RnfB [Escherichia coli IAI39]
 gi|237705571|ref|ZP_04536052.1| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA]
 gi|254793245|ref|YP_003078082.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. TW14359]
 gi|260843934|ref|YP_003221712.1| putative iron-sulfur protein [Escherichia coli O103:H2 str. 12009]
 gi|261227927|ref|ZP_05942208.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258338|ref|ZP_05950871.1| putative iron-sulfur protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282760|ref|YP_003499578.1| Electron transport complex protein rnfB [Escherichia coli O55:H7
           str. CB9615]
 gi|293414945|ref|ZP_06657588.1| electron transport complex protein rnfB [Escherichia coli B185]
 gi|293446003|ref|ZP_06662425.1| electron transport complex protein RnfB [Escherichia coli B088]
 gi|300821501|ref|ZP_07101648.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 119-7]
 gi|300907219|ref|ZP_07124881.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 84-1]
 gi|300927477|ref|ZP_07143190.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 182-1]
 gi|300990136|ref|ZP_07179143.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 200-1]
 gi|301303140|ref|ZP_07209266.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 124-1]
 gi|301329556|ref|ZP_07222339.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 78-1]
 gi|306813408|ref|ZP_07447598.1| electron transport complex protein RnfB [Escherichia coli NC101]
 gi|309793393|ref|ZP_07687820.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 145-7]
 gi|331653023|ref|ZP_08354028.1| electron transport complex protein RnfB [Escherichia coli M718]
 gi|331657597|ref|ZP_08358559.1| electron transport complex protein RnfB [Escherichia coli TA206]
 gi|331668305|ref|ZP_08369153.1| electron transport complex protein RnfB [Escherichia coli TA271]
 gi|331673197|ref|ZP_08373965.1| electron transport complex protein RnfB [Escherichia coli TA280]
 gi|331677493|ref|ZP_08378168.1| electron transport complex protein RnfB [Escherichia coli H591]
 gi|331683135|ref|ZP_08383736.1| electron transport complex protein RnfB [Escherichia coli H299]
 gi|17368140|sp|P58323|RNFB_ECO57 RecName: Full=Electron transport complex protein rnfB
 gi|123266074|sp|Q1RBG8|RNFB_ECOUT RecName: Full=Electron transport complex protein rnfB
 gi|123759604|sp|Q3Z1Y3|RNFB_SHISS RecName: Full=Electron transport complex protein rnfB
 gi|166225082|sp|A1ABH3|RNFB_ECOK1 RecName: Full=Electron transport complex protein rnfB
 gi|166991041|sp|A7ZM88|RNFB_ECO24 RecName: Full=Electron transport complex protein rnfB
 gi|226735411|sp|B7M9Y2|RNFB_ECO45 RecName: Full=Electron transport complex protein rnfB
 gi|226735412|sp|B5Z462|RNFB_ECO5E RecName: Full=Electron transport complex protein rnfB
 gi|226735413|sp|B7NU05|RNFB_ECO7I RecName: Full=Electron transport complex protein rnfB
 gi|226735417|sp|B6IB63|RNFB_ECOSE RecName: Full=Electron transport complex protein rnfB
 gi|226735418|sp|B1LEQ8|RNFB_ECOSM RecName: Full=Electron transport complex protein rnfB
 gi|254807924|sp|B7L5I1|RNFB_ECO55 RecName: Full=Electron transport complex protein rnfB
 gi|13361804|dbj|BAB35760.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73855522|gb|AAZ88229.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|91072415|gb|ABE07296.1| electron transport complex protein RnfB [Escherichia coli UTI89]
 gi|115512938|gb|ABJ01013.1| electron transport complex protein RnfB [Escherichia coli APEC O1]
 gi|157079485|gb|ABV19193.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E24377A]
 gi|170520596|gb|ACB18774.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli SMS-3-5]
 gi|187768706|gb|EDU32550.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015258|gb|EDU53380.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|188999203|gb|EDU68189.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189355528|gb|EDU73947.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189359994|gb|EDU78413.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189366182|gb|EDU84598.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189370933|gb|EDU89349.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189376873|gb|EDU95289.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|190904047|gb|EDV63759.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B7A]
 gi|190906280|gb|EDV65891.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli F11]
 gi|192927460|gb|EDV82078.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E22]
 gi|194415943|gb|EDX32209.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B171]
 gi|208725066|gb|EDZ74773.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208731121|gb|EDZ79810.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740661|gb|EDZ88343.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209158989|gb|ACI36422.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209769658|gb|ACI83141.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769660|gb|ACI83142.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769662|gb|ACI83143.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769664|gb|ACI83144.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769666|gb|ACI83145.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209912200|dbj|BAG77274.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217318133|gb|EEC26560.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218351923|emb|CAU97648.1| putative iron-sulfur protein [Escherichia coli 55989]
 gi|218365268|emb|CAR02989.1| putative iron-sulfur protein [Escherichia coli S88]
 gi|218369790|emb|CAR17561.1| putative iron-sulfur protein [Escherichia coli IAI39]
 gi|222033387|emb|CAP76128.1| electron transport complex protein rnfB [Escherichia coli LF82]
 gi|226900328|gb|EEH86587.1| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA]
 gi|254592645|gb|ACT72006.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. TW14359]
 gi|257759081|dbj|BAI30578.1| predicted iron-sulfur protein [Escherichia coli O103:H2 str. 12009]
 gi|284921552|emb|CBG34624.1| electron transport complex protein [Escherichia coli 042]
 gi|290762633|gb|ADD56594.1| Electron transport complex protein rnfB [Escherichia coli O55:H7
           str. CB9615]
 gi|291322833|gb|EFE62261.1| electron transport complex protein RnfB [Escherichia coli B088]
 gi|291432593|gb|EFF05572.1| electron transport complex protein rnfB [Escherichia coli B185]
 gi|294492581|gb|ADE91337.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli IHE3034]
 gi|300305771|gb|EFJ60291.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 200-1]
 gi|300401023|gb|EFJ84561.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 84-1]
 gi|300416581|gb|EFJ99891.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 182-1]
 gi|300526004|gb|EFK47073.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 119-7]
 gi|300841549|gb|EFK69309.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 124-1]
 gi|300844325|gb|EFK72085.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 78-1]
 gi|305853153|gb|EFM53593.1| electron transport complex protein RnfB [Escherichia coli NC101]
 gi|307626886|gb|ADN71190.1| electron transport complex protein RnfB [Escherichia coli UM146]
 gi|308122980|gb|EFO60242.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 145-7]
 gi|312946228|gb|ADR27055.1| electron transport complex protein RnfB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315257572|gb|EFU37540.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 85-1]
 gi|315286323|gb|EFU45759.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 110-3]
 gi|315297364|gb|EFU56644.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 16-3]
 gi|320174165|gb|EFW49330.1| Electron transport complex protein RnfB [Shigella dysenteriae CDC
           74-1112]
 gi|320186300|gb|EFW61036.1| Electron transport complex protein RnfB [Shigella flexneri CDC
           796-83]
 gi|320188314|gb|EFW62976.1| Electron transport complex protein RnfB [Escherichia coli O157:H7
           str. EC1212]
 gi|320195474|gb|EFW70099.1| Electron transport complex protein RnfB [Escherichia coli
           WV_060327]
 gi|320197811|gb|EFW72419.1| Electron transport complex protein RnfB [Escherichia coli EC4100B]
 gi|320647299|gb|EFX16107.1| electron transport complex protein RnfB [Escherichia coli O157:H-
           str. 493-89]
 gi|320652593|gb|EFX20862.1| electron transport complex protein RnfB [Escherichia coli O157:H-
           str. H 2687]
 gi|320653113|gb|EFX21307.1| electron transport complex protein RnfB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323163523|gb|EFZ49349.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E128010]
 gi|323169934|gb|EFZ55590.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli LT-68]
 gi|323187053|gb|EFZ72369.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli RN587/1]
 gi|323948000|gb|EGB43993.1| electron transporter [Escherichia coli H120]
 gi|323952613|gb|EGB48485.1| electron transporter [Escherichia coli H252]
 gi|323956693|gb|EGB52429.1| electron transporter [Escherichia coli H263]
 gi|324006985|gb|EGB76204.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 57-2]
 gi|324014760|gb|EGB83979.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 60-1]
 gi|324019500|gb|EGB88719.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 117-3]
 gi|324119384|gb|EGC13271.1| electron transporter [Escherichia coli E1167]
 gi|326341994|gb|EGD65775.1| Electron transport complex protein RnfB [Escherichia coli O157:H7
           str. 1044]
 gi|326343545|gb|EGD67307.1| Electron transport complex protein RnfB [Escherichia coli O157:H7
           str. 1125]
 gi|331049121|gb|EGI21193.1| electron transport complex protein RnfB [Escherichia coli M718]
 gi|331055845|gb|EGI27854.1| electron transport complex protein RnfB [Escherichia coli TA206]
 gi|331063499|gb|EGI35410.1| electron transport complex protein RnfB [Escherichia coli TA271]
 gi|331069395|gb|EGI40782.1| electron transport complex protein RnfB [Escherichia coli TA280]
 gi|331073953|gb|EGI45273.1| electron transport complex protein RnfB [Escherichia coli H591]
 gi|331079350|gb|EGI50547.1| electron transport complex protein RnfB [Escherichia coli H299]
 gi|332096075|gb|EGJ01080.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           boydii 3594-74]
 gi|333005284|gb|EGK24804.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri VA-6]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|333005860|gb|EGK25376.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-272]
 gi|333018896|gb|EGK38189.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-227]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVISDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|325088907|gb|EGC42217.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 225

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 124 ERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 181

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 182 ESP----------NAEYATETREELLYNKEKLLANGDKWE 211


>gi|323693792|ref|ZP_08107987.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323502178|gb|EGB18045.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 274

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E+C  C    CVE CP+      +      P  CI C  C  +CP +A   D   
Sbjct: 202 EDCDSCG--ICVEACPMGSISREDPKEV--PGICIKCQACVKKCPTNAKYFDDPA 252



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPG 62
           P++C  CG+C   CP+ +I  +    
Sbjct: 201 PEDCDSCGICVEACPMGSISREDPKE 226


>gi|295103696|emb|CBL01240.1| Uncharacterized Fe-S center protein [Faecalibacterium prausnitzii
           SL3/3]
          Length = 374

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + C  D   Y  EN   I  D+C  CG C   C  DAI    +   EL  
Sbjct: 197 CRGC--HRCAKECGSDAITYNAENKAVIDYDKCKGCGRCIGACSFDAIYSPNDCANELLD 254

Query: 68  KINSEYAT 75
           +  +EYA 
Sbjct: 255 RKMAEYAA 262


>gi|296100564|ref|YP_003610710.1| putative hydrogenase, 4Fe-4S ferredoxin-type component
          [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055023|gb|ADF59761.1| putative hydrogenase, 4Fe-4S ferredoxin-type component
          [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 151

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 18/53 (33%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +     C  C+   C  VCP      GE    +    CI C  C   CP  A
Sbjct: 46 AFTTAVGCHQCEDAPCANVCPTQAIRRGEGAWQVEQARCIGCKRCMVACPFGA 98


>gi|269963060|ref|ZP_06177396.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
 gi|269832192|gb|EEZ86315.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
          Length = 553

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPEDTQKFIE 247



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGESPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|269791962|ref|YP_003316866.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099597|gb|ACZ18584.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 269

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C +VCP       +N   I   +C  CG C  +CP  +I
Sbjct: 218 CIGCGL--CSKVCPEGAITMEDNLPVIDQSKCTQCGKCVEKCPTKSI 262



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CV VCP D  +   +   I  + C+ CG+C   CP   I+
Sbjct: 150 CVAVCPFDAIHIENSLARIDENRCVGCGLCVASCPKGVIE 189



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 18/70 (25%)

Query: 9   CILCKHTDCVEVCPVDCF----------------YEGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    CV  CP                    + G +   +    CI CG+C   CP 
Sbjct: 173 CVGCGL--CVASCPKGVIELVVQDKRVRVACNSHHRGLDVKNVCQLGCIGCGLCSKVCPE 230

Query: 53  DAIKPDTEPG 62
            AI  +    
Sbjct: 231 GAITMEDNLP 240


>gi|218133340|ref|ZP_03462144.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992213|gb|EEC58217.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC
           43243]
          Length = 293

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V++ CI C    C + C         + + +   +C +CG C   CP DA
Sbjct: 167 VSDKCINCGV--CEKACREQAITFTGSEIILDKSKCNNCGRCAKACPTDA 214



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 38  DECIDCGVCEPECPVDAI 55
           D+CI+CGVCE  C   AI
Sbjct: 169 DKCINCGVCEKACREQAI 186


>gi|253701687|ref|YP_003022876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
 gi|251776537|gb|ACT19118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. M21]
          Length = 97

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          E C+ C    C+EVCP   F  EG+  +    D C++CG C   CP  A+  D
Sbjct: 18 ELCVGCG--RCIEVCPHQVFQLEGKRAIVADRDACMECGACALNCPAAALNVD 68


>gi|86748479|ref|YP_484975.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2]
 gi|115502508|sp|Q2J0E6|NUOI1_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|86571507|gb|ABD06064.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           HaA2]
          Length = 171

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C                   I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CAAVCPVGCIDLSKAVADDGRWYPEHFRINFARCIFCGFCEEACPTAAIQ 106

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 107 LTPDFELGEW 116


>gi|187733860|ref|YP_001880383.1| electron transport complex protein RnfB [Shigella boydii CDC
           3083-94]
 gi|226735434|sp|B2U2C7|RNFB_SHIB3 RecName: Full=Electron transport complex protein rnfB
 gi|187430852|gb|ACD10126.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           boydii CDC 3083-94]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|330720452|gb|EGG98761.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC2047]
          Length = 218

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            CI C  T C++ CP+D        +  +  DEC  C +C   CPVD I
Sbjct: 113 ECIGC--TKCIQACPMDAILGAAKHMHTVIADECTGCDLCVEPCPVDCI 159



 Score = 33.6 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
           G+    I   ECI C  C   CP+DAI
Sbjct: 103 GKRVALIREAECIGCTKCIQACPMDAI 129



 Score = 33.6 bits (76), Expect = 9.8,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF 26
           M  V+ + C  C    CVE CPVDC 
Sbjct: 136 MHTVIADECTGCDL--CVEPCPVDCI 159


>gi|320195433|gb|EFW70058.1| NrfC-like protein [Escherichia coli WV_060327]
 gi|323187095|gb|EFZ72411.1| hypothetical protein ECRN5871_4682 [Escherichia coli RN587/1]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 605

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 1   MT--YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           MT  Y+    C  C    C + CP D    E +    I  D CI CG C   C   A+K
Sbjct: 547 MTEFYIDASLCTGCGL--CKKNCPADAISGEIKEVHVIDQDRCIKCGECINNCKFQAVK 603



 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 21  CPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CP   C    E    I    C  CG+C+  CP DAI  + + 
Sbjct: 539 CPAGVCRSMTE--FYIDASLCTGCGLCKKNCPADAISGEIKE 578


>gi|261339613|ref|ZP_05967471.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288318435|gb|EFC57373.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ E NCI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 111 VIDEANCIGC--TKCIQACPVDAIVGATRAMHTVVADLCTGCNLCVAPCPTQCIE 163


>gi|261346150|ref|ZP_05973794.1| NADH-quinone oxidoreductase subunit I [Providencia rustigianii DSM
           4541]
 gi|282565803|gb|EFB71338.1| NADH-quinone oxidoreductase subunit I [Providencia rustigianii DSM
           4541]
          Length = 180

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHEDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  W
Sbjct: 116 LTPDFEMADW 125


>gi|212223421|ref|YP_002306657.1| Formate hydrogen lyase subunit 6 [Thermococcus onnurineus NA1]
 gi|212008378|gb|ACJ15760.1| Formate hydrogen lyase subunit 6 [Thermococcus onnurineus NA1]
          Length = 205

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 8/52 (15%)

Query: 9   CILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CV  CP D       F  G   +  +   CI C  C   CP  A
Sbjct: 52  CIGCG--ACVRACPPDALTIEWDFENGRKRIVFNAARCIRCHRCVEVCPTGA 101



 Score = 40.9 bits (95), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 35 IHPDECIDCGVCEPECPVDA--IKPDTEPGLELWLKINSE 72
          I P  CI CG C   CP DA  I+ D E G    +  N+ 
Sbjct: 47 IDPHLCIGCGACVRACPPDALTIEWDFENG-RKRIVFNAA 85


>gi|191173453|ref|ZP_03034981.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
 gi|190906295|gb|EDV65906.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|223937675|ref|ZP_03629577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium
           Ellin514]
 gi|223893647|gb|EEF60106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium
           Ellin514]
          Length = 546

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKP 57
            VT  C  C    C+  CPV  + +     +  H  D+CI C  C  +CP +  K 
Sbjct: 110 TVTTACHHCVDPGCLSGCPVLAYDKDPVTGIVRHLDDQCIGCQYCIMKCPYEVPKY 165


>gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
 gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++  E CI C    C + CP        ++   I+ D CI CG C+  C  DA+  +
Sbjct: 568 HINPEFCIGCG--KCAKNCPAGAISGKIKSPYHINNDVCIKCGSCKDNCNFDAVYVE 622



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 7/46 (15%)

Query: 11  LCKHTDC-VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             K   C  +VC             I+P+ CI CG C   CP  AI
Sbjct: 550 HIKDKKCRAKVC------TALRKFHINPEFCIGCGKCAKNCPAGAI 589


>gi|194336021|ref|YP_002017815.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308498|gb|ACF43198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 188

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C +  CV  CP    +  EN    I+   C  C  C   CP DA
Sbjct: 58  SERCQHCDNAPCVTYCPTGASHYDENGTVQINRSRCTGCKACMAACPYDA 107


>gi|119355979|ref|YP_910623.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353328|gb|ABL64199.1| dissimilatory sulfite reductase beta subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 359

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +  ++CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVNGKRSLMVDEEKCICCGACFGACPAMEINHPEHSKFAIWV 264


>gi|320181353|gb|EFW56272.1| Electron transport complex protein RnfB [Shigella boydii ATCC 9905]
          Length = 192

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|317059515|ref|ZP_07924000.1| electron transport complex [Fusobacterium sp. 3_1_5R]
 gi|313685191|gb|EFS22026.1| electron transport complex [Fusobacterium sp. 3_1_5R]
          Length = 316

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 221 ACIGCG--MCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 267



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            + DC  VCPV      E  + ++  + CI CG+C   CP   I
Sbjct: 149 GYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVI 192



 Score = 40.1 bits (93), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPD---------ECIDCGVCE 47
           V  E CI C    CV+ CP                 ++              CI CG+C+
Sbjct: 172 VDEEACISCGL--CVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 229

Query: 48  PECPVDAIK 56
             CP  AI+
Sbjct: 230 RTCPFGAIE 238


>gi|313148455|ref|ZP_07810648.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           fragilis 3_1_12]
 gi|313137222|gb|EFR54582.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           fragilis 3_1_12]
          Length = 289

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+  L    + CI C  C   CP  A   DT 
Sbjct: 222 CTHCG--ACAKMCPVSAIIKGDE-LNTDAERCIKCCACVKGCPQKARVYDTP 270



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG C   CPV AI    E
Sbjct: 218 DESLCTHCGACAKMCPVSAIIKGDE 242


>gi|297538948|ref|YP_003674717.1| NADH-quinone oxidoreductase subunit I [Methylotenera sp. 301]
 gi|297258295|gb|ADI30140.1| NADH-quinone oxidoreductase, chain I [Methylotenera sp. 301]
          Length = 163

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG+CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPAMAITIESEQREDNTRRTTRYDIDLTKCIFCGMCEESCPVDSI 118



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 62 ERCIACKLCEAVCPAMAITIESEQRED 88


>gi|258405023|ref|YP_003197765.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797250|gb|ACV68187.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C  CK+  C++ C  +   +      + I PD+C     C   CP   I+ D
Sbjct: 65  PCQHCKNAPCIKACKEEAISKDVQTGIVRIDPDKCAGSRACLEACPYGVIQFD 117


>gi|255505769|ref|ZP_05348062.3| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265964|gb|EET59169.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 325

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 10/50 (20%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIK 56
           C+ C    C  VC +D           HPD  ECI CG C   CPV AI 
Sbjct: 231 CVGC--QKCAHVCKMDVDP------VKHPDSAECIRCGECRDACPVQAIH 272



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVD 53
           C+      C  +CP+   Y   N ++I        +C+ C  C   C +D
Sbjct: 195 CMSVYRFFCKAMCPLGAIYGLLNKISIYHLEVDEKKCVGCQKCAHVCKMD 244


>gi|242280644|ref|YP_002992773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123538|gb|ACS81234.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 263

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--P 61
           V  + C LC    C  VCP      G   +   PD+CI C  C   C  +A K +     
Sbjct: 187 VSNDACQLCG--SCERVCPTAAISVGS-LVETDPDKCIFCCACVKVCAFEARKLEVPRLL 243

Query: 62  GLELWLKIN 70
            +  WL  N
Sbjct: 244 EVSQWLADN 252


>gi|253699754|ref|YP_003020943.1| hydrogenase 2 protein HybA [Geobacter sp. M21]
 gi|251774604|gb|ACT17185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 309

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCPV    + +    +  + + CI C  C+  CP +  K   E  L  
Sbjct: 113 SCMHCQKPSCVSVCPVSAMTKEKVSGIVDYNKNTCIGCRYCQIACPYNIPKFQWEKALPQ 172


>gi|90579425|ref|ZP_01235235.1| FdxH [Vibrio angustum S14]
 gi|90440258|gb|EAS65439.1| FdxH [Vibrio angustum S14]
          Length = 291

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C+ C    C++ CP  D   + EN +   + ++C+ CG C   CP D
Sbjct: 99  SCMHCSDPGCLKACPEPDAIVQYENGVVDFNSEKCVGCGYCIAGCPFD 146


>gi|78044498|ref|YP_360900.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996613|gb|ABB15512.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 228

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           Y +   C +C++  CV+VCPV   Y  +     +  + CI C  C   CP    + + E 
Sbjct: 58  YFLPVACQMCENAPCVKVCPVGATYTDDKGRVLVDYERCIGCRYCMTACPYGVRQFNWED 117

Query: 62  G 62
            
Sbjct: 118 P 118


>gi|77164629|ref|YP_343154.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|254433116|ref|ZP_05046624.1| NADH-quinone oxidoreductase, chain I subfamily, putative
           [Nitrosococcus oceani AFC27]
 gi|110287763|sp|Q3JC22|NUOI1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|76882943|gb|ABA57624.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|207089449|gb|EDZ66720.1| NADH-quinone oxidoreductase, chain I subfamily, putative
           [Nitrosococcus oceani AFC27]
          Length = 180

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCIALQKTEDEQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQ 115

Query: 57  PDTEPGLELWLKIN 70
              +  +  + + N
Sbjct: 116 LTPDFEMGEYERPN 129


>gi|15606463|ref|NP_213843.1| DMSO reductase chain B [Aquifex aeolicus VF5]
 gi|2983679|gb|AAC07244.1| DMSO reductase chain B [Aquifex aeolicus VF5]
          Length = 254

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y  E +  + ++ D+CI C +C   CP    + D 
Sbjct: 72  SCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWACPYGCREFDE 125


>gi|51894427|ref|YP_077118.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
 gi|51858116|dbj|BAD42274.1| iron hydrogenase [Symbiobacterium thermophilum IAM 14863]
          Length = 456

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPEC-PVDAIKPD 58
          M ++  E C  C    C EVCPVD          ++  + C+ CG C   C    +I  D
Sbjct: 1  MIFIDQELCTGC--RRCAEVCPVDAIVGEPGKPQSVDQEICVMCGQCVQVCSSYGSIWDD 58



 Score = 40.1 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           + I  + C  C  C   CPVDAI  +      +  +I
Sbjct: 1  MIFIDQELCTGCRRCAEVCPVDAIVGEPGKPQSVDQEI 38


>gi|262402197|ref|ZP_06078758.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297579085|ref|ZP_06941013.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
 gi|262350979|gb|EEZ00112.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297536679|gb|EFH75512.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
          Length = 553

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG       + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFIE 247



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 42  DCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            C  C   CP  A+  +        ++IN
Sbjct: 185 GCERCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|71653204|ref|XP_815243.1| ribonuclease L inhibitor [Trypanosoma cruzi strain CL Brener]
 gi|70880285|gb|EAN93392.1| ribonuclease L inhibitor, putative [Trypanosoma cruzi]
          Length = 647

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 2  TYVVTENCILCK-HTDCVEVCPVD-----CFYEGENFLAIHP---DECIDCGVCEPECPV 52
            V  + C   K   +C + CPV+     C  E +    I     + CI CG+C  +CP 
Sbjct: 18 AVVNADRCKPSKCSLECSKCCPVNLQGKLCI-EVQKKSVISKISEELCIGCGLCVKKCPY 76

Query: 53 DAIK 56
           AI+
Sbjct: 77 GAIQ 80


>gi|119384970|ref|YP_916026.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
 gi|156633536|sp|A1B486|NUOI_PARDP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NADH
           dehydrogenase I subunit I; AltName: Full=NADH-quinone
           oxidoreductase subunit 9; Short=NQO9; AltName:
           Full=NDH-1 subunit 9; AltName: Full=NDH-1 subunit I
 gi|119374737|gb|ABL70330.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
          Length = 163

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 62 ERCIACKLCEAVCPAQAITIDAEPRED 88


>gi|332343389|gb|AEE56723.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|330999801|ref|ZP_08323506.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329573804|gb|EGG55393.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 231

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C++  CV+ CPV   Y+      + I  D+CI C  C   C   A KPD
Sbjct: 88  CNHCENPTCVKACPVKATYKRPEDGIVVIDYDKCIHCMNCTKACAYGARKPD 139


>gi|323484838|ref|ZP_08090194.1| 4Fe-4S binding domain-containing protein [Clostridium symbiosum
           WAL-14163]
 gi|323401834|gb|EGA94176.1| 4Fe-4S binding domain-containing protein [Clostridium symbiosum
           WAL-14163]
          Length = 274

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E+C  C    CVE CP+      +      P  CI C  C  +CP +A   D   
Sbjct: 202 EDCDSCG--ICVEACPMGSISREDPKEV--PGICIKCQACVKKCPTNAKYFDDPA 252



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPG 62
           P++C  CG+C   CP+ +I  +    
Sbjct: 201 PEDCDSCGICVEACPMGSISREDPKE 226


>gi|307195743|gb|EFN77575.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Harpegnathos saltator]
          Length = 152

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 51  ERCIACKL--CEAICPAQAITIEAEERIDGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 107



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + E 
Sbjct: 51 ERCIACKLCEAICPAQAITIEAEE 74



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 92  CIYCGF--CQEACPVDAIVEGPNF 113


>gi|296218966|ref|XP_002755672.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Callithrix jacchus]
          Length = 210

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|322417691|ref|YP_004196914.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18]
 gi|320124078|gb|ADW11638.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18]
          Length = 176

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGEN         I+   CI CG+C   CP  AI
Sbjct: 54  AERCVAC--YLCSGACPVDCISMAAAEGENGRRYAVWFRINFSRCILCGLCAEACPTLAI 111

Query: 56  KPDTE 60
           +  +E
Sbjct: 112 QMSSE 116


>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 636

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV--DAI 55
           C  C    C+  CP      G+  +  I  ++C  CG C   CP    AI
Sbjct: 569 CKGCG--SCLRKCPATAIEGGKKTIHVIDQEKCTKCGTCIEACPAAFGAI 616



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I P +C  CG C  +CP  AI+
Sbjct: 562 FHIDPAKCKGCGSCLRKCPATAIE 585


>gi|217974489|ref|YP_002359240.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
 gi|217499624|gb|ACK47817.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS223]
          Length = 490

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++
Sbjct: 289 DCVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYM 341

Query: 68  KIN 70
             N
Sbjct: 342 SEN 344


>gi|51246476|ref|YP_066360.1| glutamate synthase, beta subunit [Desulfotalea psychrophila LSv54]
 gi|50877513|emb|CAG37353.1| related to glutamate synthase, beta subunit [Desulfotalea
           psychrophila LSv54]
          Length = 775

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 8   NCILCKHTD-CVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECP 51
           +C  C+    C  +CP           GE     + D+CI CG C   CP
Sbjct: 717 SCASCRDCHLCETICPEGAISREDLGNGEYRYVSNDDKCIACGFCADTCP 766



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 40  CIDCGVCEPECPVDAIKPDT 59
           C DC +CE  CP  AI  + 
Sbjct: 721 CRDCHLCETICPEGAISRED 740


>gi|118579705|ref|YP_900955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118502415|gb|ABK98897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 264

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           CI C    CV +CP      G          CI C  C  ECP  A     E   E  + 
Sbjct: 193 CIRCG--TCVRICPTAAISSGVGMPT-DLVACIACCACVRECPTGARVMRDERIREKAVW 249

Query: 69  INSEYATQ 76
           +N + A +
Sbjct: 250 LNEKCAER 257



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 22  PVDCFYEGENFLAIHPDE----CIDCGVCEPECPVDAI 55
           P D  Y     L+I P+     CI CG C   CP  AI
Sbjct: 171 PGDSPYREWKGLSIPPETDASLCIRCGTCVRICPTAAI 208


>gi|300114500|ref|YP_003761075.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii
           C-113]
 gi|299540437|gb|ADJ28754.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113]
          Length = 180

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC         +G     F  I+   CI CG CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVDCIALQKTEDEQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQ 115

Query: 57  PDTEPGLELWLKIN 70
              +  +  + + N
Sbjct: 116 LTPDFEMGEYERPN 129


>gi|295107118|emb|CBL04661.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
          pamelaeae 7-10-1-b]
          Length = 175

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           V   C+ C+   C  VCP    Y G + +  +    CI C  C   CP  
Sbjct: 48 TVPLQCMHCEDAPCAAVCPTGAAYIGADGIVGVDEGRCIGCKYCMAACPYQ 98


>gi|265766041|ref|ZP_06094082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253709|gb|EEZ25174.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 278

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+  L    + CI C  C   CP  A   DT 
Sbjct: 211 CTHCG--ACAKMCPVSAIAKGDE-LNTDAERCIKCCACVKGCPQKARVYDTP 259



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG C   CPV AI    E
Sbjct: 207 DESLCTHCGACAKMCPVSAIAKGDE 231


>gi|254162798|ref|YP_003045906.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli B str. REL606]
 gi|253974699|gb|ACT40370.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli B str. REL606]
 gi|253978865|gb|ACT44535.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
          [Escherichia coli BL21(DE3)]
          Length = 110

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 3  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 57


>gi|226329125|ref|ZP_03804643.1| hypothetical protein PROPEN_03028 [Proteus penneri ATCC 35198]
 gi|225202311|gb|EEG84665.1| hypothetical protein PROPEN_03028 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVD 53
          +C  C+   C+ VCP       E    + +  ++CI C  C   CP  
Sbjct: 26 SCQQCEDAPCIPVCPTGASWRDETNGIVRVDKEKCIGCSYCISACPYQ 73


>gi|157376475|ref|YP_001475075.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella sediminis HAW-EB3]
 gi|157318849|gb|ABV37947.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          sediminis HAW-EB3]
          Length = 85

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I PD C +C        C   CP+D 
Sbjct: 1  MALIIDDSCINCD--MCEPECPNQAITMGEEIYEIDPDLCTECVGHYDKPTCISVCPIDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IDPD 62


>gi|152999560|ref|YP_001365241.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           baltica OS185]
 gi|151364178|gb|ABS07178.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           baltica OS185]
          Length = 490

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++
Sbjct: 289 DCVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYM 341

Query: 68  KIN 70
             N
Sbjct: 342 SEN 344


>gi|147921293|ref|YP_684893.1| NADPH-dependent glutamate synthase large subunit [uncultured
          methanogenic archaeon RC-I]
 gi|110620289|emb|CAJ35567.1| NADPH-dependent glutamate synthase, large subunit domain 2
          [uncultured methanogenic archaeon RC-I]
          Length = 503

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  CK   CV+ C  +     + +  I  D  +C+ C  C   CP  AI+ +       +
Sbjct: 18 CARCK--RCVDECGFEALTYSKEYHEIIADDAKCVACHRCATMCPKHAIRIEDNALAYKY 75

Query: 67 LKINSEYATQW 77
             N+ ++ Q 
Sbjct: 76 ---NANFSAQH 83


>gi|148262556|ref|YP_001229262.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396056|gb|ABQ24689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 252

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 18/102 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CV  CPV              G   + ++   CI CG C P CP  A   D
Sbjct: 79  PCMQCDKPPCVTACPVKGPDGATWKETKGIGTGIVPVNYARCIGCGKCVPACPYQARTMD 138

Query: 59  T-------EPGLELWLKINS-EYATQWPNITTKKESLPSAAK 92
                    P L+ +  + S EY  +WP  + K + + +A K
Sbjct: 139 DGGFHTAGTPELQKYETLPSFEYGKKWPR-SGKNQPIGNARK 179


>gi|191169559|ref|ZP_03031284.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|190900395|gb|EDV60219.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|332527354|ref|ZP_08403410.1| 4Fe-4S ferredoxin [Rubrivivax benzoatilyticus JA2]
 gi|332111763|gb|EGJ11743.1| 4Fe-4S ferredoxin [Rubrivivax benzoatilyticus JA2]
          Length = 85

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    C   CP      G+    I P  C +C        C   CPV+ 
Sbjct: 1  MALWITDECINCDV--CEPECPNQAISMGDERYEIDPRRCTECVGHFDEPQCVQVCPVEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 7  DECINCDVCEPECPNQAISMGDE 29


>gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
 gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
          Length = 619

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPEC--PVDAIK 56
           VV E C  C    C++ CPV      +  +  I  ++CI CG C   C    +AI+
Sbjct: 561 VVDEKCEGC--MLCLKSCPVGAVSGTKKHIHSIDTEKCIKCGTCIELCSGKYNAIE 614


>gi|312966566|ref|ZP_07780786.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          2362-75]
 gi|312288676|gb|EFR16576.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          2362-75]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|312131902|ref|YP_003999242.1| NADH dehydrogenase subunit i [Leadbetterella byssophila DSM 17132]
 gi|311908448|gb|ADQ18889.1| NADH dehydrogenase subunit I [Leadbetterella byssophila DSM 17132]
          Length = 183

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 71  ERCTACGL--CAVACPAEAISMVAAERVKGEEHLYREEKYAAAYEINMLRCIFCGLCEEA 128

Query: 50  CPVDAIK 56
           CP  AI 
Sbjct: 129 CPKQAIY 135


>gi|257064958|ref|YP_003144630.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
          heliotrinireducens DSM 20476]
 gi|256792611|gb|ACV23281.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
          heliotrinireducens DSM 20476]
          Length = 395

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+  ++ +     C + C         N L I P+ CI CG C   CP  A++     
Sbjct: 24 QRCVAVRNRNASCMRCADACTSGAISIQNNELVISPERCIGCGTCATVCPTCALEAHRPN 83

Query: 62 GLEL 65
            EL
Sbjct: 84 DAEL 87



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + I PD CI C +C   CP  AI+   +  
Sbjct: 288 HVVIDPDTCISCRMCATFCPTGAIQKFDDED 318



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 3   YVVTEN--CILCKHTDCVEVCPVDCFY---EGENFLAIH--PDECIDCGVCEPECPVDA 54
           +VV +   CI C    C   CP        + +  + I   P +C+ C  CE  CP +A
Sbjct: 288 HVVIDPDTCISC--RMCATFCPTGAIQKFDDEDGTIGIDHYPGDCVRCRCCEDICPSNA 344


>gi|154278457|ref|XP_001540042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150413627|gb|EDN09010.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 225

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 124 ERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 181

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 182 ESP----------NAEYATETREELLYNKEKLLANGDKWE 211


>gi|146309813|ref|YP_001174887.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Enterobacter sp. 638]
 gi|145316689|gb|ABP58836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 153

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+     C  C+   C  VCP       +  +A+    CI C  C   CP  A
Sbjct: 51  TFSTAVTCHHCEDAPCGNVCPTGAIRREQGRIAVDQQRCIGCKSCVIACPFGA 103


>gi|45359069|ref|NP_988626.1| pyruvate oxidoreductase (synthase) subunit delta [Methanococcus
          maripaludis S2]
 gi|45047944|emb|CAF31062.1| pyruvate oxidoreductase (synthase) subunit delta [Methanococcus
          maripaludis S2]
          Length = 85

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+ C+  +C   CP  C  E +    I  D C  C +CE ECPV AIK + E 
Sbjct: 32 DKCVKCE--NCYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKAEREE 84


>gi|332289766|ref|YP_004420618.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
 gi|330432662|gb|AEC17721.1| hydrogenase 2 protein HybA [Gallibacterium anatis UMN179]
          Length = 224

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C +  CV VCP    F + +  +  ++ D C+ C  C   CP 
Sbjct: 92  SCQHCSNAPCVHVCPTGASFIDAKTGIVDVNKDLCVGCQYCIAVCPY 138


>gi|321250193|ref|XP_003191722.1| iron-sulfur protein required for ribosome biogenesis and
          translation initiation; Rli1p [Cryptococcus gattii
          WM276]
 gi|317458189|gb|ADV19935.1| Iron-sulfur protein required for ribosome biogenesis and
          translation initiation, putative; Rli1p [Cryptococcus
          gattii WM276]
          Length = 603

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +++++   CK   C + C   C               +    I  + CI CG+C  +CP 
Sbjct: 10 IISDD--KCKPKRCRQECKRSCPVVKMGKLCIEVNPSDKKAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          +AI+
Sbjct: 68 EAIQ 71


>gi|319638825|ref|ZP_07993583.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102]
 gi|317399729|gb|EFV80392.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102]
          Length = 159

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|262190854|ref|ZP_06049074.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93]
 gi|262033273|gb|EEY51791.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93]
          Length = 553

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTDTQKFIE 247



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|256032576|pdb|3EUN|A Chain A, Crystal Structure Of The 2[4fe-4s] C57a Ferredoxin
          Variant From Allochromatium Vinosum
          Length = 82

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58
          +T+ CI C    C   CP     +G+    I P  C +C        C   CPVDAI  D
Sbjct: 4  ITDECINCDV--CEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDAIIKD 61



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 6  DECINCDVCEPECPNGAISQGDE 28


>gi|256830113|ref|YP_003158841.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579289|gb|ACU90425.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 1143

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 20/65 (30%)

Query: 9   CILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEPEC 50
           C+ C    C EVCPV    E                    N   +  D CI C  C   C
Sbjct: 117 CVSCG--KCSEVCPVKVPSEFNAGLTQRSAVYLPVPHAIPNHYVLDLDNCIRCWKCHEAC 174

Query: 51  PVDAI 55
           P  AI
Sbjct: 175 PTGAI 179



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDA 54
            C LC    CV  CP            I  DE  C  CG C   CP  A
Sbjct: 1075 CSLC--QACVAACPYGARTVDLENELILVDEMLCQGCGACAAVCPNSA 1120



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 35  IHPDECIDCGVCEPECPV 52
           + P +C+ CG C   CPV
Sbjct: 112 VDPHKCVSCGKCSEVCPV 129


>gi|225560616|gb|EEH08897.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 225

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 24/100 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI 
Sbjct: 124 ERCIACKL--CEAICPALAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIV 181

Query: 57  PDTEPGLELWLKINSEYATQWPN--ITTKKESLPSAAKMD 94
                        N+EYAT+     +  K++ L +  K +
Sbjct: 182 ESP----------NAEYATETREELLYNKEKLLANGDKWE 211


>gi|225028462|ref|ZP_03717654.1| hypothetical protein EUBHAL_02737 [Eubacterium hallii DSM 3353]
 gi|224954212|gb|EEG35421.1| hypothetical protein EUBHAL_02737 [Eubacterium hallii DSM 3353]
          Length = 263

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E CI C    C +VCPV    E  N   I    C+ CG C   CP  A     EP
Sbjct: 189 EYCIYC--MLCADVCPVKAISE-SNPKEIDSSICLRCGSCLRICPTQAKYFTEEP 240


>gi|160944294|ref|ZP_02091523.1| hypothetical protein FAEPRAM212_01805 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444476|gb|EDP21480.1| hypothetical protein FAEPRAM212_01805 [Faecalibacterium prausnitzii
           M21/2]
          Length = 374

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + C  D   Y  EN   I  D+C  CG C   C  DAI    +   EL  
Sbjct: 197 CRGC--HRCAKECGSDAITYNAENKAVIDYDKCKGCGRCIGACSFDAIYSPNDCANELLD 254

Query: 68  KINSEYAT 75
           +  +EYA 
Sbjct: 255 RKMAEYAA 262


>gi|150402891|ref|YP_001330185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033921|gb|ABR66034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 395

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT++C+ C    CV  CPVD     ++   I  D+CI C VC   CP +AI 
Sbjct: 128 VTKDCVACGV--CVPECPVDAISI-KDIAVIDTDKCIYCTVCSQTCPWNAIF 176



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E CI C+   CVE CP     Y GE      P  C  CG+C   CPV+AI  + E
Sbjct: 194 VNEEECIGCE--KCVEACPGSMIEYNGEALGVKLPVACPACGLCVESCPVEAISLEVE 249



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C  C    CVE CPV+               +  L    D+C  CG C  +CP  AIK 
Sbjct: 228 ACPACGL--CVESCPVEAISLEVEYASAKPVTDEGLVWLEDKCAYCGPCALKCPTGAIKV 285

Query: 58  DTEPGLEL 65
               GLEL
Sbjct: 286 VNPKGLEL 293



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           T+ CI C  T C + CP +  +                 ++ +ECI C  C   CP   I
Sbjct: 157 TDKCIYC--TVCSQTCPWNAIFVAGKMPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 214

Query: 56  KPDTEP 61
           + + E 
Sbjct: 215 EYNGEA 220



 Score = 34.0 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C++C    C + CP +               CI C  C   CP  A
Sbjct: 9  DACLVCN--ACAKACPTEAIEIAPFK------TCIQCFSCANACPTGA 48


>gi|85708744|ref|ZP_01039810.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
 gi|85690278|gb|EAQ30281.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
          Length = 162

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEPRED 87


>gi|57168471|ref|ZP_00367605.1| ferredoxin [Campylobacter coli RM2228]
 gi|57020279|gb|EAL56953.1| ferredoxin [Campylobacter coli RM2228]
          Length = 94

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T++CI C    C++ CPV          EGE+   ++ D+C++C        C  
Sbjct: 1  MAVKITDSCIACG--SCIDECPVSAIVDDANNPEGEDRYYVYADKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPD 58
                D CI CG C  ECPV AI  D
Sbjct: 1  MAVKITDSCIACGSCIDECPVSAIVDD 27


>gi|312135816|ref|YP_004003154.1| hypothetical protein Calow_1825 [Caldicellulosiruptor owensensis
           OL]
 gi|311775867|gb|ADQ05354.1| protein of unknown function DUF362 [Caldicellulosiruptor owensensis
           OL]
          Length = 375

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNTCPAQAIEMKSRKAYVDLKKCIRCYCCHELCPAKAIK 363



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
               + CI C  C   CP  AI+
Sbjct: 312 VFDKNICIGCAECFNTCPAQAIE 334


>gi|300087560|ref|YP_003758082.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527293|gb|ADJ25761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 265

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPV 52
           C  C    CV VCPV    +  +   +     C+ C  C   CP 
Sbjct: 75  CFHCVDPVCVSVCPVAAMRKTPDGPVVWDEARCMGCRYCAQACPF 119


>gi|255502230|gb|ACU11595.1| HfsB [Thermoanaerobacterium saccharolyticum]
          Length = 572

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      +    I    CI CG C   CP +A
Sbjct: 10 NCRNC--YKCIRYCPVKAIKVNDEQAEIIEYRCIACGRCLNICPQNA 54


>gi|218885428|ref|YP_002434749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756382|gb|ACL07281.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 652

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    C+  CP          GE    +    C  CG+C   CP  AI+       +
Sbjct: 584 CVGCG--KCITTCPYGAIEWMELRGEMKARVIETVCQGCGICTVTCPQGAIQLQHFTDNQ 641

Query: 65  LWLKINS 71
           +  ++N+
Sbjct: 642 ILAEVNA 648



 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 28/84 (33%), Gaps = 26/84 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYE---------------GENFLAIHPDECID 42
           TYV  E C  C    C+E CP     D F E                     I P  C  
Sbjct: 235 TYVDWELCTGCGL--CMEKCPSRKSPDAFNEHVGVTTSINIPFPQAIPKKAIIDPTSCRQ 292

Query: 43  -----CGVCEPECPVDAIKPDTEP 61
                CGVC   CP  AI+ D E 
Sbjct: 293 FVKGKCGVCAKVCPTGAIRYDMED 316


>gi|169795317|ref|YP_001713110.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          AYE]
 gi|215482850|ref|YP_002325053.1| Ferredoxin [Acinetobacter baumannii AB307-0294]
 gi|301346773|ref|ZP_07227514.1| Ferredoxin [Acinetobacter baumannii AB056]
 gi|301513211|ref|ZP_07238448.1| Ferredoxin [Acinetobacter baumannii AB058]
 gi|301595953|ref|ZP_07240961.1| Ferredoxin [Acinetobacter baumannii AB059]
 gi|332850427|ref|ZP_08432747.1| ferredoxin [Acinetobacter baumannii 6013150]
 gi|332871877|ref|ZP_08440289.1| ferredoxin [Acinetobacter baumannii 6013113]
 gi|169148244|emb|CAM86107.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter baumannii
          AYE]
 gi|213987405|gb|ACJ57704.1| Ferredoxin [Acinetobacter baumannii AB307-0294]
 gi|332730698|gb|EGJ62009.1| ferredoxin [Acinetobacter baumannii 6013150]
 gi|332731091|gb|EGJ62392.1| ferredoxin [Acinetobacter baumannii 6013113]
          Length = 87

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I    C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCD--MCLPECPNTAIFEGSKVYEIDSSRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKQD 62


>gi|163751796|ref|ZP_02159013.1| electron transport complex protein RnfB [Shewanella benthica KT99]
 gi|161328360|gb|EDP99520.1| electron transport complex protein RnfB [Shewanella benthica KT99]
          Length = 189

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            Y+  + CI C  T C++ CPVD        +  +  D C  C +C   CPVD I
Sbjct: 107 AYIREDECIGC--TKCIQACPVDAILGTGKLMHTVITDYCTGCDLCVEPCPVDCI 159


>gi|315917799|ref|ZP_07914039.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691674|gb|EFS28509.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 316

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 221 ACIGCG--MCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 267



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            + DC  VCPV      E  + ++  + CI CG+C   CP   I
Sbjct: 149 GYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVI 192



 Score = 40.1 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPD---------ECIDCGVCE 47
           V  E CI C    CV+ CP                 ++              CI CG+C+
Sbjct: 172 VDEEACISCGL--CVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 229

Query: 48  PECPVDAIK 56
             CP  AI+
Sbjct: 230 RTCPFGAIE 238


>gi|291523681|emb|CBK81974.1| hypothetical protein CC1_34490 [Coprococcus catus GD/7]
          Length = 275

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  CK   C EVCP+      EN   + P  CI C  C  +CP  A   D  
Sbjct: 202 EICTRCK--ICAEVCPMGSISR-ENVEEV-PGVCIKCHACVRKCPTGARFFDDP 251


>gi|257462471|ref|ZP_05626883.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium sp. D12]
 gi|317060128|ref|ZP_07924613.1| electron transport complex protein [Fusobacterium sp. D12]
 gi|313685804|gb|EFS22639.1| electron transport complex protein [Fusobacterium sp. D12]
          Length = 325

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 217 ACIGCG--MCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 263



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            + DC  VCPV      E  + ++  + CI CG+C   CP   I
Sbjct: 145 GYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVI 188



 Score = 40.1 bits (93), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPD---------ECIDCGVCE 47
           V  E CI C    CV+ CP                 ++              CI CG+C+
Sbjct: 168 VDEEACISCGL--CVKACPKSVIAMTPAAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 225

Query: 48  PECPVDAIK 56
             CP  AI+
Sbjct: 226 RTCPFGAIE 234


>gi|227831490|ref|YP_002833270.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|227457938|gb|ACP36625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
          Length = 280

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 147


>gi|168241839|ref|ZP_02666771.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451496|ref|YP_002047695.1| hypothetical protein SeHA_C3989 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|198244915|ref|YP_002217626.1| hypothetical protein SeD_A4050 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205354729|ref|YP_002228530.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858903|ref|YP_002245554.1| electron-transport protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194409800|gb|ACF70019.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197939431|gb|ACH76764.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205274510|emb|CAR39545.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205339015|gb|EDZ25779.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206710706|emb|CAR35067.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326625412|gb|EGE31757.1| protein AegA [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326629869|gb|EGE36212.1| protein AegA [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 157

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFGA 103


>gi|166033231|ref|ZP_02236060.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC
           27755]
 gi|166027588|gb|EDR46345.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC
           27755]
          Length = 291

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C        +  + I  ++C +C  C   CP DA
Sbjct: 167 DDCIQCGV--CVKACREGALRMEDGKIVIDREKCNNCARCVKSCPTDA 212



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C++    D   +G   +  + D+CI CGVC   C   A++ + 
Sbjct: 145 NCLKAEENDVGIKGGMTVECNHDDCIQCGVCVKACREGALRMED 188


>gi|195953290|ref|YP_002121580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932902|gb|ACG57602.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 279

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVD 53
           + C  C++  CV VCP    +   +  + +    C  CG C   CP D
Sbjct: 104 QLCNHCENPPCVPVCPTGATYKRQDGIVVVDNTICWGCGYCVNACPYD 151


>gi|157375180|ref|YP_001473780.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
 gi|189043390|sp|A8FUX9|RNFB_SHESH RecName: Full=Electron transport complex protein rnfB
 gi|157317554|gb|ABV36652.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            Y+  E CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 107 AYIREEECIGC--TKCIQACPVDAILGSGKLMHTVITDYCTGCDLCVAPCPVDCI 159


>gi|92114035|ref|YP_573963.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797125|gb|ABE59264.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 552

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWL 67
           T C++VCP D     +  + I P  C   G C   CP  AI+    T   L+ ++
Sbjct: 194 TRCLDVCPADAISSVKQEIVIDPFRCHGAGSCTSACPTGAIRYALPTPERLDDYI 248



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
           T+NC LC    CV VCP           A++     C+ CG+CE  CP   I
Sbjct: 417 TDNCTLC--MACVAVCPTQALSSPGQSPALNFQESACVQCGLCETACPEQVI 466



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           I  D C  C  C   CP  A+    +     + +
Sbjct: 415 IDTDNCTLCMACVAVCPTQALSSPGQSPALNFQE 448


>gi|332968226|gb|EGK07303.1| NADH-quinone oxidoreductase subunit I [Kingella kingae ATCC 23330]
          Length = 159

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEQREDGTRRTTRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEQRED 84


>gi|331663148|ref|ZP_08364058.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA143]
 gi|331058947|gb|EGI30924.1| putative oxidoreductase Fe-S subunit [Escherichia coli TA143]
          Length = 184

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|315186845|gb|EFU20603.1| hypothetical protein SpithDRAFT_0758 [Spirochaeta thermophila DSM
           6578]
          Length = 371

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + C  C +  C  VCPV C    ++        CI C  C   CP +AI
Sbjct: 306 VIADRCRRCGY--CARVCPVSCITM-DSLPRWDYSRCIYCYCCHENCPHEAI 354



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +  D C  CG C   CPV  I  D+ P  +
Sbjct: 306 VIADRCRRCGYCARVCPVSCITMDSLPRWD 335


>gi|302338428|ref|YP_003803634.1| electron transport complex, RnfABCDGE type subunit beta
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635613|gb|ADK81040.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 277

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 12  CKHT-----DCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           CK+       C++VCPVD   Y+    + +  D CI CG C   CP  
Sbjct: 140 CKYGCLGLGSCMKVCPVDAISYDSGGRVVVDKDACISCGNCIEACPTG 187


>gi|297538836|ref|YP_003674605.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
 gi|297258183|gb|ADI30028.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
          Length = 482

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCPV               ECI CG+C   C     K D   GL  + 
Sbjct: 266 DCIDCSF--CVQVCPVGIDIRDGLQY-----ECISCGLCIDACDSVMDKMDYPRGLIKFS 318

Query: 68  KINSE 72
            +NS 
Sbjct: 319 TLNSA 323


>gi|209964542|ref|YP_002297457.1| NADH dehydrogenase subunit I [Rhodospirillum centenum SW]
 gi|226737410|sp|B6ISX3|NUOI_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209958008|gb|ACI98644.1| NADH-quinone oxidoreductase chain I [Rhodospirillum centenum SW]
          Length = 162

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPALAITIEAEPREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 117


>gi|197335878|ref|YP_002156366.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio fischeri MJ11]
 gi|197317368|gb|ACH66815.1| cytochrome c nitrite reductase, Fe-S protein [Vibrio fischeri MJ11]
          Length = 228

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C++  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCENAPCVMVCPTGAAYKDETTGIVDVHNEKCVGCGYCLVACPYQ 145


>gi|158523142|ref|YP_001531012.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511968|gb|ABW68935.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 298

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C LC    C  VCP D     ++ L      C+ C +C   CP +A+    +P 
Sbjct: 232 ACTLCG--ACEAVCPFDAIKITDDRLVYDIGACMGCELCVENCPDNALTLYNDPD 284



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
            P  C  CG CE  CP DAIK   +
Sbjct: 229 DPAACTLCGACEAVCPFDAIKITDD 253


>gi|116619541|ref|YP_821697.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222703|gb|ABJ81412.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 251

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +   C  C    CV VCP            +   P+ C+ C  C   CP  A   +   
Sbjct: 72  FIPMLCQHCGDAPCVSVCPQQAIDVNPVTGIVEQMPERCLGCRYCMVACPYHARYFNW-- 129

Query: 62  GLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQK 99
                      +   WP    K  +   A +M GV +K
Sbjct: 130 -----------WDPAWPPGMEKTLNPDVAPRMRGVVEK 156


>gi|34581178|ref|ZP_00142658.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246]
 gi|28262563|gb|EAA26067.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246]
          Length = 143

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
          E CI CK   C  +CP      E +             I   +CI CG+C+  CPVDAI
Sbjct: 42 ERCIACKL--CEAICPAQAIVIEADEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 98



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +   +
Sbjct: 42 ERCIACKLCEAICPAQAIVIEADERED 68



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 83  CIYCGL--CQEACPVDAIVEGPNF 104


>gi|330447307|ref|ZP_08310957.1| cytochrome c oxidase accessory protein CcoG [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491498|dbj|GAA05454.1| cytochrome c oxidase accessory protein CcoG [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 475

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP      EG  +      ECI+CG C   C
Sbjct: 272 DCIDCNL--CVQVCPTGIDIREGMQY------ECINCGACVDAC 307



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G      +P E     CIDC +C   CP
Sbjct: 225 CIHMCPYARFQSAMFDKDSYIVGYDTRRGEKRGPRSRKANPAEQGLGDCIDCNLCVQVCP 284

Query: 52  VD 53
             
Sbjct: 285 TG 286


>gi|303327364|ref|ZP_07357805.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302862304|gb|EFL85237.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 259

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T+ C  C    CV+ CP+    E +         CI C  C   CPV+A   D  
Sbjct: 186 TDACTQC--MICVQGCPMGVISEDDPHQV--AAGCIRCCACVKFCPVEAKYFDDP 236


>gi|283853853|ref|ZP_06371070.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570750|gb|EFC18793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 250

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV+VCP    ++  + +  +    CI C  C   CP  A
Sbjct: 113 CNHCEAPMCVKVCPTQATFQRPDGIVMMDFHRCIGCRYCMAGCPYGA 159


>gi|268326009|emb|CBH39597.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [uncultured archaeon]
          Length = 595

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 2   TYVVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + V ENC  C    CVE  CP       E+   I+   C  CG+C   CP  AI+
Sbjct: 542 PFTVNENCTGC--RKCVEFGCP--AIEFDEDSARINA-LCTGCGICAQICPNKAIE 592


>gi|302877304|ref|YP_003845868.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Gallionella capsiferriformans ES-2]
 gi|302580093|gb|ADL54104.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Gallionella capsiferriformans ES-2]
          Length = 542

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 9   CILCKHT----DCVEVCPVDC-FYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C +     +C  VCP +     G       + D C  CG+C  ECP  AI
Sbjct: 483 CLSCGNCFECDNCYGVCPDNAVIKLGPGKGFQFNYDYCKGCGLCVAECPCGAI 535


>gi|225568763|ref|ZP_03777788.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM
           15053]
 gi|225162262|gb|EEG74881.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM
           15053]
          Length = 203

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y +T+ C  C    C  +CP  C  +G     I  + C+ CG+C   CPV A++
Sbjct: 149 YRITDQCTGCGV--CQNICPQQCIRKGTP-CEIAQEHCLHCGLCYENCPVRAVE 199


>gi|297584153|ref|YP_003699933.1| dimethylsulfoxide reductase subunit B [Bacillus selenitireducens
           MLS10]
 gi|297142610|gb|ADH99367.1| dimethylsulfoxide reductase, chain B [Bacillus selenitireducens
           MLS10]
          Length = 179

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 2   TYV--VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
            YV  VT +C  C    CVE CP    ++ E+ +     ++C+ C +C   CP D     
Sbjct: 49  PYVDHVTISCNHCDSPKCVENCPTGAMHKREDGIVDYDHEKCVGCKMCLWSCPYDGPVYL 108

Query: 59  TEPG 62
            + G
Sbjct: 109 EDEG 112


>gi|121533858|ref|ZP_01665684.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307369|gb|EAX48285.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 201

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C +  C+ VCP    Y+  + +  +   +C+ CG C   CP  
Sbjct: 58  CNHCANPPCLAVCPTGATYKRPDGIVALDAGKCMGCGYCVVACPYQ 103


>gi|16766951|ref|NP_462566.1| oxidoreductase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549092|ref|ZP_02342851.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167990901|ref|ZP_02572000.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197262525|ref|ZP_03162599.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16422231|gb|AAL22525.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240780|gb|EDY23400.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205325550|gb|EDZ13389.1| protein AegA [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205330788|gb|EDZ17552.1| protein AegA [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261248814|emb|CBG26667.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995921|gb|ACY90806.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160202|emb|CBW19724.1| putative electron-transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914692|dbj|BAJ38666.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226722|gb|EFX51772.1| Electron transport protein HydN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132026|gb|ADX19456.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990516|gb|AEF09499.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 157

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C  VCPV         + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFGA 103


>gi|15601890|ref|NP_244962.1| NrfC [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720226|gb|AAK02109.1| NrfC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 226

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 94  SCQHCHNAPCVHVCPTGASFVDKETGIVDVHKDLCVGCQYCIAVCPY 140


>gi|53714499|ref|YP_100491.1| putative ferredoxin [Bacteroides fragilis YCH46]
 gi|253565000|ref|ZP_04842456.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52217364|dbj|BAD49957.1| putative ferredoxin [Bacteroides fragilis YCH46]
 gi|251946465|gb|EES86842.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 278

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C ++CPV    +G+  L    + CI C  C   CP  A   DT 
Sbjct: 211 CTHCG--ACAKMCPVSAIAKGDE-LNTDAERCIKCCACVKGCPQKARVYDTP 259



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG C   CPV AI    E
Sbjct: 207 DESLCTHCGACAKMCPVSAIAKGDE 231


>gi|189500792|ref|YP_001960262.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189496233|gb|ACE04781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 199

 Score = 50.2 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C+ C++T C+  CP    Y+ E+ +  I+ D C+ C  C   CP DA  P
Sbjct: 60  CMHCENTPCLSACPSGATYKTEDGIIRINYDRCMGCYACSIACPYDARYP 109


>gi|256839685|ref|ZP_05545194.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
          D13]
 gi|256738615|gb|EEU51940.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
          D13]
          Length = 301

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV  CP       E  +      C  CG C   CP  A++
Sbjct: 52 CIGCG--ACVNACPTGALTLTEAGIVTDRSLCRTCGRCAEVCPTLAME 97



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 9/42 (21%)

Query: 21 CPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CP+ C               L     +CI CG C   CP  A
Sbjct: 26 CPLACVWCHNPEGISPRAEKLYTRK-KCIGCGACVNACPTGA 66


>gi|257783995|ref|YP_003179212.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Atopobium parvulum DSM 20469]
 gi|257472502|gb|ACV50621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           parvulum DSM 20469]
          Length = 461

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 6   TENCILCKHTD------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
              C+ C          C++VCP +C       + I  + C+ CG+C   CP +
Sbjct: 59  ANRCLRCASGKPEACSRCLDVCPANCIDIHNQSVRIDDEACLQCGLCVAACPTE 112



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECP 51
           C +C    C   C        E   L I    C++CG CE  CP
Sbjct: 328 CTVCGD--CKNTCTTHAIDIDERGKLTIKMPFCVNCGACEIVCP 369


>gi|220905127|ref|YP_002480439.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869426|gb|ACL49761.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 306

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C LC    C+++C          F  I   +C  CGVC   CP  A++         +
Sbjct: 70  QACTLCG--RCMDLCRFGAVSREGEFYHIDALDCEGCGVCHKLCPAGAVEFPQRHCGTWY 127

Query: 67  L 67
           L
Sbjct: 128 L 128


>gi|212711816|ref|ZP_03319944.1| hypothetical protein PROVALCAL_02891 [Providencia alcalifaciens
          DSM 30120]
 gi|212685338|gb|EEB44866.1| hypothetical protein PROVALCAL_02891 [Providencia alcalifaciens
          DSM 30120]
          Length = 294

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 4  VVTENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + C+  +  +     C   CPV     G     I  + C  CG C   CPVDAI+ +
Sbjct: 14 VINDKCVHKRLKNSVCNNCANSCPVGAISFGFMDAKIDNELCYQCGNCLFTCPVDAIE-N 72

Query: 59 TEPGLELW 66
           EP    +
Sbjct: 73 IEPHERTY 80



 Score = 36.7 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CILC    C +VC            +I    C  C  C+  C
Sbjct: 198 SCILCG--ACAKVCDEQAIEIENYQFSIDDKRCTGCMSCQVVC 238


>gi|190574690|ref|YP_001972535.1| putative respiratory nitrate reductase subunit [Stenotrophomonas
           maltophilia K279a]
 gi|190012612|emb|CAQ46240.1| putative respiratory nitrate reductase subunit [Stenotrophomonas
           maltophilia K279a]
          Length = 514

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSG 238


>gi|163741480|ref|ZP_02148871.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
 gi|161385214|gb|EDQ09592.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|150403238|ref|YP_001330532.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150034268|gb|ABR66381.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus maripaludis C7]
          Length = 612

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 9   CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  CK   CVE   CP        +   I  + C  CG+C   CPVDAIK   E 
Sbjct: 563 CTGCK--ICVERLGCP--AITLNGDIPEIM-ENCTGCGLCMAVCPVDAIKEVDEQ 612



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF 32
           + ENC  C    C+ VCPVD   E +  
Sbjct: 587 IMENCTGCGL--CMAVCPVDAIKEVDEQ 612


>gi|115502490|sp|Q0MQI2|NDUS8_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|111661819|gb|ABH12161.1| mitochondrial complex I subunit NDUFS8 [Gorilla gorilla]
          Length = 210

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|90410739|ref|ZP_01218754.1| HydN [Photobacterium profundum 3TCK]
 gi|90328370|gb|EAS44668.1| HydN [Photobacterium profundum 3TCK]
          Length = 182

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C +VCP +     +  + +    CI C  C   CP  A
Sbjct: 58  CRQCDDAPCAQVCPNNAIVLEDGHVKVVQSRCIGCKTCVIACPYGA 103


>gi|78485170|ref|YP_391095.1| NADH dehydrogenase subunit I [Thiomicrospira crunogena XCL-2]
 gi|115502545|sp|Q31HF2|NUOI_THICR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|78363456|gb|ABB41421.1| NADH dehydrogenase I chain I [Thiomicrospira crunogena XCL-2]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP +    E E             I   +CI CG CE  CPVDA+
Sbjct: 62  ERCIACKL--CEAVCPANAITIESEERDDGTRRTTQYDIDMFKCIYCGFCEEACPVDAV 118



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP +AI  ++E   +
Sbjct: 62 ERCIACKLCEAVCPANAITIESEERDD 88


>gi|85374152|ref|YP_458214.1| NADH dehydrogenase subunit I [Erythrobacter litoralis HTCC2594]
 gi|123409621|sp|Q2NA74|NUOI_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84787235|gb|ABC63417.1| NADH dehydrogenase I, I subunit [Erythrobacter litoralis HTCC2594]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAQAITIESEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++EP  +
Sbjct: 61 ERCIACKLCEAVCPAQAITIESEPRDD 87


>gi|134300063|ref|YP_001113559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052763|gb|ABO50734.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 267

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    C E C      E  N +   P +C  CG C   CP +AI+ +     E +L
Sbjct: 51  CLECG--MCRESCRFGAISETFNMI---PMKCEGCGACVLVCPQEAIRLEDVKTGETYL 104



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G     I    C++CG+C   C   AI
Sbjct: 40 GAKEAVIDSSICLECGMCRESCRFGAI 66


>gi|332098105|gb|EGJ03078.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 155-74]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|320656571|gb|EFX24467.1| putative electron transport protein ygfS [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|295112187|emb|CBL28937.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Synergistetes bacterium SGP1]
          Length = 57

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V +  C+ C+   CV  CPV      +    +   +C++CG C   CPV AI
Sbjct: 6  VDSGTCVGCE--SCVGACPVSAISMTDGHAQVDEGKCVECGSCVSTCPVSAI 55


>gi|282163197|ref|YP_003355582.1| hypothetical protein MCP_0527 [Methanocella paludicola SANAE]
 gi|282155511|dbj|BAI60599.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 294

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V    C+ C    C   C  +     E   AI P  C  CGVC   CP  AI     P  
Sbjct: 64  VDESACVACG--ACETYCRFNAVSMRE-HAAIDPTACEACGVCVAVCPAGAISLVERPCG 120

Query: 64  ELWL 67
           E+++
Sbjct: 121 EVYV 124


>gi|262381260|ref|ZP_06074398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296437|gb|EEY84367.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 286

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++     P  
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVLHSEFPPE 65

Query: 64 E 64
          +
Sbjct: 66 K 66



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          L I  + CI CG C   CP D I      G 
Sbjct: 3  LNIDQESCIKCGKCVRVCPSD-IFTQERAGE 32


>gi|239831694|ref|ZP_04680023.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG
           3301]
 gi|239823961|gb|EEQ95529.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG
           3301]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|239787653|emb|CAX84120.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein precursor
           [uncultured bacterium]
          Length = 244

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+H  C  VCP    ++ ++ L  +    CI C  C   CP  A
Sbjct: 103 CNHCEHPPCKHVCPTAATFQRQDGLVLVDMHRCIGCRYCIIACPYKA 149


>gi|218689575|ref|YP_002397787.1| electron transport complex protein RnfB [Escherichia coli ED1a]
 gi|331647117|ref|ZP_08348211.1| electron transport complex protein RnfB [Escherichia coli M605]
 gi|254807925|sp|B7MV10|RNFB_ECO81 RecName: Full=Electron transport complex protein rnfB
 gi|218427139|emb|CAR07926.1| putative iron-sulfur protein [Escherichia coli ED1a]
 gi|281178700|dbj|BAI55030.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330911435|gb|EGH39945.1| electron transport complex protein RnfB [Escherichia coli AA86]
 gi|331043900|gb|EGI16036.1| electron transport complex protein RnfB [Escherichia coli M605]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|163738809|ref|ZP_02146223.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
           BS107]
 gi|161388137|gb|EDQ12492.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
           BS107]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRED 89


>gi|121534132|ref|ZP_01665957.1| Fe-S cluster domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307235|gb|EAX48152.1| Fe-S cluster domain protein [Thermosinus carboxydivorans Nor1]
          Length = 444

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +   C  C   +C++ CP +          I    CIDCG C   CP  A
Sbjct: 11 IANRCQGC--VNCIKRCPTEAIRIRGGKAQITEARCIDCGECIRRCPNHA 58


>gi|119899348|ref|YP_934561.1| putative benzoyl-CoA oxygenase component A [Azoarcus sp. BH72]
 gi|119671761|emb|CAL95675.1| putative Benzoyl-CoA oxygenase component A [Azoarcus sp. BH72]
          Length = 416

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E+CPVD          +  D C  C  C   CP  AI
Sbjct: 19 EICIRCN--TCEEICPVDAITHDNLNYVVKFDVCNGCLACISPCPTGAI 65



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CPVDAI  D
Sbjct: 16 IDPEICIRCNTCEEICPVDAITHD 39


>gi|26247875|ref|NP_753915.1| electron transport complex protein RnfB [Escherichia coli CFT073]
 gi|227885956|ref|ZP_04003761.1| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972]
 gi|300988845|ref|ZP_07178840.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 45-1]
 gi|301050124|ref|ZP_07197028.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 185-1]
 gi|81748476|sp|Q8FH96|RNFB_ECOL6 RecName: Full=Electron transport complex protein rnfB
 gi|26108278|gb|AAN80480.1|AE016761_55 Electron transport complex protein rnfB [Escherichia coli CFT073]
 gi|227837048|gb|EEJ47514.1| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972]
 gi|300298146|gb|EFJ54531.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 185-1]
 gi|300407383|gb|EFJ90921.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 45-1]
 gi|307553651|gb|ADN46426.1| electron transport complex protein RnfB [Escherichia coli ABU
           83972]
 gi|315291968|gb|EFU51320.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 153-1]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|15802042|ref|NP_288064.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           EDL933]
 gi|12515617|gb|AAG56617.1|AE005386_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|148262605|ref|YP_001229311.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396105|gb|ABQ24738.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 368

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C++ C  D     E    I P++C  CG C   C   AI        EL +K
Sbjct: 195 CTACG--ICLKSCAHDAIAIIEGKAVIDPEKCTGCGRCITACLQKAINVQWNEASELVMK 252

Query: 69  INSEYAT 75
              E+A 
Sbjct: 253 KMCEFAK 259


>gi|83953899|ref|ZP_00962620.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
 gi|83841844|gb|EAP81013.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|193071591|ref|ZP_03052498.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|312969693|ref|ZP_07783876.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          1827-70]
 gi|192955089|gb|EDV85585.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|310337978|gb|EFQ03067.1| uncharacterized ferredoxin-like protein ydhX [Escherichia coli
          1827-70]
 gi|320197853|gb|EFW72461.1| NrfC-like protein [Escherichia coli EC4100B]
 gi|323186056|gb|EFZ71412.1| hypothetical protein ECOK1357_0518 [Escherichia coli 1357]
 gi|323948034|gb|EGB44026.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|332096031|gb|EGJ01036.1| hypothetical protein SB359474_1636 [Shigella boydii 3594-74]
 gi|332756987|gb|EGJ87330.1| hypothetical protein SF434370_1951 [Shigella flexneri 4343-70]
 gi|333003867|gb|EGK23402.1| hypothetical protein SFK218_2582 [Shigella flexneri K-218]
 gi|333005332|gb|EGK24852.1| hypothetical protein SFVA6_2053 [Shigella flexneri VA-6]
          Length = 184

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|16129586|ref|NP_416145.1| electron transport complex protein, iron-sulfur protein, required
           for the reduction of SoxR [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108470|ref|AP_002250.1| predicted iron-sulfur protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|157161090|ref|YP_001458408.1| electron transport complex protein RnfB [Escherichia coli HS]
 gi|170020020|ref|YP_001724974.1| electron transport complex protein RnfB [Escherichia coli ATCC
           8739]
 gi|170081292|ref|YP_001730612.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|193070250|ref|ZP_03051194.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E110019]
 gi|194431902|ref|ZP_03064192.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1012]
 gi|194436652|ref|ZP_03068753.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 101-1]
 gi|218554196|ref|YP_002387109.1| electron transport complex protein RnfB [Escherichia coli IAI1]
 gi|238900844|ref|YP_002926640.1| putative iron-sulfur protein [Escherichia coli BW2952]
 gi|253773414|ref|YP_003036245.1| electron transport complex protein RnfB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161690|ref|YP_003044798.1| electron transport complex protein RnfB [Escherichia coli B str.
           REL606]
 gi|256018179|ref|ZP_05432044.1| electron transport complex protein RnfB [Shigella sp. D9]
 gi|256022711|ref|ZP_05436576.1| electron transport complex protein RnfB [Escherichia sp. 4_1_40B]
 gi|260855453|ref|YP_003229344.1| putative iron-sulfur protein [Escherichia coli O26:H11 str. 11368]
 gi|260868120|ref|YP_003234522.1| putative iron-sulfur protein [Escherichia coli O111:H- str. 11128]
 gi|300819311|ref|ZP_07099510.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 107-1]
 gi|300931502|ref|ZP_07146820.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 187-1]
 gi|300950448|ref|ZP_07164366.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 116-1]
 gi|300959101|ref|ZP_07171189.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 175-1]
 gi|301029279|ref|ZP_07192384.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 196-1]
 gi|301647800|ref|ZP_07247588.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 146-1]
 gi|307138282|ref|ZP_07497638.1| electron transport complex protein RnfB [Escherichia coli H736]
 gi|312969649|ref|ZP_07783832.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1827-70]
 gi|331642221|ref|ZP_08343356.1| electron transport complex protein RnfB [Escherichia coli H736]
 gi|332279227|ref|ZP_08391640.1| ferredoxin II [Shigella sp. D9]
 gi|6176588|sp|P77223|RNFB_ECOLI RecName: Full=Electron transport complex protein rnfB
 gi|166991042|sp|A8A0H1|RNFB_ECOHS RecName: Full=Electron transport complex protein rnfB
 gi|189043385|sp|B1IQC6|RNFB_ECOLC RecName: Full=Electron transport complex protein rnfB
 gi|226735414|sp|B7M0I5|RNFB_ECO8A RecName: Full=Electron transport complex protein rnfB
 gi|226735415|sp|B1XF93|RNFB_ECODH RecName: Full=Electron transport complex protein rnfB
 gi|259646559|sp|C4ZY91|RNFB_ECOBW RecName: Full=Electron transport complex protein rnfB
 gi|1742687|dbj|BAA15383.1| predicted iron-sulfur protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787915|gb|AAC74700.1| electron transport complex protein, iron-sulfur protein, required
           for the reduction of SoxR [Escherichia coli str. K-12
           substr. MG1655]
 gi|157066770|gb|ABV06025.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli HS]
 gi|169754948|gb|ACA77647.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli ATCC 8739]
 gi|169889127|gb|ACB02834.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|192956431|gb|EDV86890.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E110019]
 gi|194419810|gb|EDX35889.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1012]
 gi|194424684|gb|EDX40670.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 101-1]
 gi|218360964|emb|CAQ98537.1| putative iron-sulfur protein [Escherichia coli IAI1]
 gi|238862599|gb|ACR64597.1| predicted iron-sulfur protein [Escherichia coli BW2952]
 gi|242377359|emb|CAQ32105.1| member of SoxR-reducing complex [Escherichia coli BL21(DE3)]
 gi|253324458|gb|ACT29060.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973591|gb|ACT39262.1| electron transport complex protein RnfB [Escherichia coli B str.
           REL606]
 gi|253977786|gb|ACT43456.1| electron transport complex protein RnfB [Escherichia coli
           BL21(DE3)]
 gi|257754102|dbj|BAI25604.1| predicted iron-sulfur protein [Escherichia coli O26:H11 str. 11368]
 gi|257764476|dbj|BAI35971.1| predicted iron-sulfur protein [Escherichia coli O111:H- str. 11128]
 gi|260449248|gb|ACX39670.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli DH1]
 gi|299877815|gb|EFI86026.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 196-1]
 gi|300314289|gb|EFJ64073.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 175-1]
 gi|300450216|gb|EFK13836.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 116-1]
 gi|300460705|gb|EFK24198.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 187-1]
 gi|300528082|gb|EFK49144.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 107-1]
 gi|301074084|gb|EFK88890.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 146-1]
 gi|309701854|emb|CBJ01166.1| electron transport complex protein [Escherichia coli ETEC H10407]
 gi|310337934|gb|EFQ03023.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1827-70]
 gi|315136269|dbj|BAJ43428.1| electron transport complex protein RnfB [Escherichia coli DH1]
 gi|315618814|gb|EFU99397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 3431]
 gi|323152868|gb|EFZ39138.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli EPECa14]
 gi|323180942|gb|EFZ66480.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1180]
 gi|323186100|gb|EFZ71456.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1357]
 gi|323937423|gb|EGB33701.1| electron transporter [Escherichia coli E1520]
 gi|323940295|gb|EGB36487.1| electron transporter [Escherichia coli E482]
 gi|323962198|gb|EGB57792.1| electron transporter [Escherichia coli H489]
 gi|323973846|gb|EGB69019.1| electron transporter [Escherichia coli TA007]
 gi|331039019|gb|EGI11239.1| electron transport complex protein RnfB [Escherichia coli H736]
 gi|332091212|gb|EGI96301.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           boydii 5216-82]
 gi|332101579|gb|EGJ04925.1| ferredoxin II [Shigella sp. D9]
 gi|332343346|gb|AEE56680.1| electron transport complex RnfB [Escherichia coli UMNK88]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|329298911|ref|ZP_08256247.1| electron transport complex protein RnfB [Plautia stali symbiont]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 116 NCIGC--TKCIQACPVDAIVGATRAMHTVLSDVCTGCDLCVALCPTDCIE 163



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|313200191|ref|YP_004038849.1| cytochrome c oxidase accessory protein ccog [Methylovorus sp.
           MP688]
 gi|312439507|gb|ADQ83613.1| cytochrome c oxidase accessory protein CcoG [Methylovorus sp.
           MP688]
          Length = 479

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C +  CV VCP            I    CI CG+C   C
Sbjct: 268 DCIDCGY--CVNVCPTGVDIR--KGFQID---CIACGLCIDAC 303



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 40  CIDCGVCEPECPVD 53
           CIDCG C   CP  
Sbjct: 269 CIDCGYCVNVCPTG 282


>gi|271502700|ref|YP_003335726.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270346255|gb|ACZ79020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 177

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D     ++ + +    CI C  C   CP  AI
Sbjct: 57  CHQCENAPCASVCPHDALVRHQDSIQVISSRCIGCKSCVIACPFGAI 103


>gi|261403041|ref|YP_003247265.1| NIL domain protein [Methanocaldococcus vulcanius M7]
 gi|261370034|gb|ACX72783.1| NIL domain protein [Methanocaldococcus vulcanius M7]
          Length = 131

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP++  Y  +++  I   +EC+ C  C   CP  AI+
Sbjct: 80  EKCVHCG--CCITQCPINVIYMDDDYNVIFKEEECVGCKNCLKACPFKAIE 128


>gi|238925110|ref|YP_002938627.1| MurB family protein [Eubacterium rectale ATCC 33656]
 gi|238876786|gb|ACR76493.1| MurB family protein [Eubacterium rectale ATCC 33656]
          Length = 1070

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 5   VTENC-----ILCKHTDCVEVCPVDCFYE-GENFLAIHP----DECIDCGVCEPECPV 52
           +T+NC     + C    C  +CP D     G +     P    D+C +CG+C   CPV
Sbjct: 555 ITQNCNMNLCVGCG--ACSSICPNDAITMKGNDLGYYKPIVNIDKCSNCGICSKICPV 610



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 36  HPDECIDCGVCEPECPVDAI 55
           + + C+ CG C   CP DAI
Sbjct: 560 NMNLCVGCGACSSICPNDAI 579


>gi|257065401|ref|YP_003145073.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793054|gb|ACV23724.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 193

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C++  CV  CPV   Y+     L +H D  CI C  C   CP  A + D    L
Sbjct: 57  SCNHCENPACVANCPVGAMYKDPETGLVLHDDNLCIKCETCMRSCPYGAPQHDMVEDL 114


>gi|291287581|ref|YP_003504397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884741|gb|ADD68441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 184

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++T C  VCP    Y  +  +  I    CI C  C   CP DA
Sbjct: 63  CQHCENTPCATVCPTSATYRTDEGVVLIDYKRCIICKACMTACPYDA 109


>gi|226327967|ref|ZP_03803485.1| hypothetical protein PROPEN_01849 [Proteus penneri ATCC 35198]
 gi|225203671|gb|EEG86025.1| hypothetical protein PROPEN_01849 [Proteus penneri ATCC 35198]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP    +  EN +  +  + CI C  C   CP 
Sbjct: 63  SCQHCEDAPCVSVCPTGASFIDENGIVQVKKELCIGCDYCVGACPY 108


>gi|218184578|gb|EEC67005.1| hypothetical protein OsI_33716 [Oryza sativa Indica Group]
          Length = 555

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 2  TYVVTENC--ILCKHTDCVEVCPV-----DCFYEGENF--LAIHPDECIDCGVCEPECPV 52
            V  + C    C   +C   CPV      C   G       I  + CI CG+C  +CP 
Sbjct: 11 AVVDEDRCKPNKCG-QECRRSCPVVKIGKHCIEIGPRSKSALISEELCIGCGICVKKCPF 69

Query: 53 DAI 55
           AI
Sbjct: 70 GAI 72


>gi|220933486|ref|YP_002512385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994796|gb|ACL71398.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thioalkalivibrio sp. HL-EbGR7]
          Length = 84

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G+    I P  C +C        C   CPVD 
Sbjct: 1  MALMITDECINCDV--CEPECPNGAISPGDEIYVIDPALCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPKDPD 64


>gi|154414441|ref|XP_001580248.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121914463|gb|EAY19262.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 658

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           CI C       +CP D            + PD+C  CG+CE  CP ++    T       
Sbjct: 595 CIGCGRCT---MCPNDAITLIPAKWVYKVDPDKCNGCGLCESVCPTNSCGLITREKAR-- 649

Query: 67  LKINSEYATQW 77
            ++N++ A  W
Sbjct: 650 -ELNAK-AKHW 658



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
           N L  +P  CI CG C   CP DAI
Sbjct: 587 NHLV-NPYTCIGCGRCTM-CPNDAI 609


>gi|9651771|gb|AAF91263.1|AF230199_5 pyruvate oxidoreductase gamma subunit [Methanococcus maripaludis]
          Length = 85

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+ C+  +C   CP  C  E +    I  D C  C +CE ECPV AIK + E 
Sbjct: 32 DKCVKCE--NCYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKAEREE 84


>gi|56478215|ref|YP_159804.1| electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
 gi|81677376|sp|Q5P1B1|RNFB_AZOSE RecName: Full=Electron transport complex protein rnfB
 gi|56314258|emb|CAI08903.1| Electron transport complex protein [Aromatoleum aromaticum EbN1]
          Length = 183

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP-DTEPGLE 64
           + CI C  T C++ CPVD        +  + P  C  C +C   CPVD I        LE
Sbjct: 111 QLCIGC--TLCIQACPVDAIVGAAKHMHTVVPALCTGCELCVAPCPVDCIAMTPLPETLE 168

Query: 65  LW 66
            W
Sbjct: 169 TW 170



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 108 IDEQLCIGCTLCIQACPVDAI 128


>gi|238796066|ref|ZP_04639577.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia mollaretii ATCC
           43969]
 gi|238720011|gb|EEQ11816.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia mollaretii ATCC
           43969]
          Length = 173

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP      GE+ + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCENSCPNGAIVTGEHGVQVLASRCIGCKTCMLVCPFGA 103


>gi|301309723|ref|ZP_07215662.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300831297|gb|EFK61928.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 286

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++     P  
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVLHSEFPPE 65

Query: 64 E 64
          +
Sbjct: 66 K 66



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          L I  + CI CG C   CP D I      G 
Sbjct: 3  LNIDQESCIKCGKCVRVCPSD-IFTQERAGE 32


>gi|298376411|ref|ZP_06986366.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266289|gb|EFI07947.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 286

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          E+CI C    CV VCP D F +   GE    +  + CI CG C   CP  ++     P  
Sbjct: 8  ESCIKCG--KCVRVCPSDIFTQERAGETIGLVRVESCIVCGHCVDVCPTGSVLHSEFPPE 65

Query: 64 E 64
          +
Sbjct: 66 K 66



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          L I  + CI CG C   CP D I      G 
Sbjct: 3  LNIDQESCIKCGKCVRVCPSD-IFTQERAGE 32


>gi|284922834|emb|CBG35923.1| putative oxidoreductase, 4Fe-4S subunit [Escherichia coli 042]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|302383058|ref|YP_003818881.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193686|gb|ADL01258.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIESEPRSDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118


>gi|284175349|ref|ZP_06389318.1| oxydoreductase, putative [Sulfolobus solfataricus 98/2]
 gi|261601282|gb|ACX90885.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 280

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 95  YNIPINCFHCINAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 147


>gi|253998122|ref|YP_003050185.1| cytochrome c oxidase accessory protein CcoG [Methylovorus sp.
           SIP3-4]
 gi|253984801|gb|ACT49658.1| cytochrome c oxidase accessory protein CcoG [Methylovorus sp.
           SIP3-4]
          Length = 479

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C +  CV VCP            I    CI CG+C   C
Sbjct: 268 DCIDCGY--CVNVCPTGVDIR--KGFQID---CIACGLCIDAC 303



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%)

Query: 40  CIDCGVCEPECPVD 53
           CIDCG C   CP  
Sbjct: 269 CIDCGYCVNVCPTG 282


>gi|227356178|ref|ZP_03840567.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
 gi|227163642|gb|EEI48558.1| formate-dependent nitrite reductase [Fe-S] protein [Proteus
           mirabilis ATCC 29906]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP    +  EN +  +  + CI C  C   CP 
Sbjct: 63  SCQHCEDAPCVSVCPTGASFIDENGIVQVKKELCIGCDYCVGACPY 108


>gi|242277663|ref|YP_002989792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120557|gb|ACS78253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 259

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV VCP    ++  + +  +    CI C  C   CP  A
Sbjct: 120 CNHCESPSCVRVCPTKATFKRPDGIVAMDYHRCIGCRYCMTGCPYGA 166


>gi|153009743|ref|YP_001370958.1| NADH dehydrogenase subunit I [Ochrobactrum anthropi ATCC 49188]
 gi|166918794|sp|A6X1M5|NUOI_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|151561631|gb|ABS15129.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum anthropi ATCC
           49188]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|144900499|emb|CAM77363.1| Nitrogen fixation protein fixG [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 439

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 9/43 (20%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           CI CK   CV+VCP      EG          CI CG+C   C
Sbjct: 224 CIDCK--MCVQVCPTGIDIREGLQM------ACIGCGLCVDAC 258


>gi|170728793|ref|YP_001762819.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814140|gb|ACA88724.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 236

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVAD 165

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 166 NCDFCLNSKLA 176


>gi|121608149|ref|YP_995956.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121552789|gb|ABM56938.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 496

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C  T CV+VCPV               ECI CG+C   C     K    PGL  + 
Sbjct: 286 DCIDC--TLCVQVCPVGIDIRKGLQY-----ECIGCGLCVDACNTVMDKMHYPPGLIRYS 338

Query: 68  KINS 71
             N+
Sbjct: 339 THNA 342


>gi|21243257|ref|NP_642839.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|289665567|ref|ZP_06487148.1| putative ferredoxin [Xanthomonas campestris pv. vasculorum
          NCPPB702]
 gi|289667749|ref|ZP_06488824.1| putative ferredoxin [Xanthomonas campestris pv. musacearum
          NCPPB4381]
 gi|325915117|ref|ZP_08177443.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          vesicatoria ATCC 35937]
 gi|325919642|ref|ZP_08181651.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          gardneri ATCC 19865]
 gi|21108791|gb|AAM37375.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|325538639|gb|EGD10309.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          vesicatoria ATCC 35937]
 gi|325549890|gb|EGD20735.1| NADH:ubiquinone oxidoreductase chain I-like protein [Xanthomonas
          gardneri ATCC 19865]
          Length = 94

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINELCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 58

Query: 55 IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  ++   P
Sbjct: 59 IDPDPAIPETHDQLLAKLMQLQRDHPELYEQEPPAP 94


>gi|83942660|ref|ZP_00955121.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
 gi|83846753|gb|EAP84629.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|117925097|ref|YP_865714.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Magnetococcus sp. MC-1]
 gi|117608853|gb|ABK44308.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Magnetococcus sp. MC-1]
          Length = 228

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C+ C+   CV VCP +  Y  E +  + +  D+CI C  C   CP  
Sbjct: 72  SCLHCEDAPCVPVCPTEASYKREEDGIVLVDYDKCIGCKYCSWNCPYG 119


>gi|257452975|ref|ZP_05618274.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium sp. 3_1_5R]
          Length = 312

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 217 ACIGCG--MCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 263



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            + DC  VCPV      E  + ++  + CI CG+C   CP   I
Sbjct: 145 GYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVI 188



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPD---------ECIDCGVCE 47
           V  E CI C    CV+ CP                 ++              CI CG+C+
Sbjct: 168 VDEEACISCGL--CVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 225

Query: 48  PECPVDAIK 56
             CP  AI+
Sbjct: 226 RTCPFGAIE 234


>gi|212712283|ref|ZP_03320411.1| hypothetical protein PROVALCAL_03369 [Providencia alcalifaciens DSM
           30120]
 gi|268591142|ref|ZP_06125363.1| NADH-quinone oxidoreductase subunit I [Providencia rettgeri DSM
           1131]
 gi|212685029|gb|EEB44557.1| hypothetical protein PROVALCAL_03369 [Providencia alcalifaciens DSM
           30120]
 gi|291313368|gb|EFE53821.1| NADH-quinone oxidoreductase subunit I [Providencia rettgeri DSM
           1131]
          Length = 180

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHEDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  W
Sbjct: 116 LTPDFEMADW 125


>gi|167762989|ref|ZP_02435116.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC
           43183]
 gi|167699329|gb|EDS15908.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEP 61
           V TENCI C    CV+ C  D  +   E    I   +C+ CG C   C  D A+  D + 
Sbjct: 191 VATENCIGCN--ICVKHCAHDAIHLNAERKAEIDYTKCVGCGQCVALCQHDAAVVSDWDT 248

Query: 62  GLELWLKINSEYA 74
              L  KI +EY+
Sbjct: 249 SERLNYKI-AEYS 260


>gi|281355829|ref|ZP_06242323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
 gi|281318709|gb|EFB02729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
          Length = 57

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C  C+   CV  CPV      +   +++  +C+DCG C   CPV+AI
Sbjct: 5  VNKEKCTGCE--TCVGECPVSAISMVDGKASVNAGDCVDCGACTGACPVEAI 54


>gi|146308115|ref|YP_001188580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145576316|gb|ABP85848.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           mendocina ymp]
          Length = 470

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP          L     ECI CG C   C
Sbjct: 269 DCIDC--TLCVQVCPTGIDIRDGLQL-----ECIGCGACIDAC 304


>gi|222055601|ref|YP_002537963.1| nitroreductase [Geobacter sp. FRC-32]
 gi|221564890|gb|ACM20862.1| nitroreductase [Geobacter sp. FRC-32]
          Length = 303

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAI 55
          V TE C+ C    C  +CPV      +  + I  +    CI CG C   CP  +I
Sbjct: 16 VETERCLHCG--KCAAICPVGVLQLKDENIKIDNNIHFGCIACGQCMMVCPNGSI 68


>gi|14250944|emb|CAC39239.1| FdhA-II protein [Eubacterium acidaminophilum]
          Length = 897

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 2   TYVVTEN--CILCKHTDCVEVCP----VDCFYEGENFLAIH----------PDECIDCGV 45
            + +++   CI C    CV VC            E     H            +C+ CG 
Sbjct: 137 PFYISDQNKCISCG--RCVRVCNELQCTGAIDLAERGFDTHVATPFDVDLEKSKCVSCGN 194

Query: 46  CEPECPVDAIKPDTEPGLELW 66
           C   CPV A+ P ++     W
Sbjct: 195 CVAVCPVGALMPKSKELFRQW 215


>gi|310658269|ref|YP_003935990.1| hypothetical protein CLOST_0962 [Clostridium sticklandii DSM 519]
 gi|308825047|emb|CBH21085.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 378

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C H  C   CP +     +N   ++  +CI C  C   CP DA+
Sbjct: 322 CISCGH--CKRNCPANVISMVDNKPVVNLKDCISCFCCHEVCPADAV 366


>gi|301308715|ref|ZP_07214667.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300833239|gb|EFK63857.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 258

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ CI C    C +VCP        +      D C+ C  C   CPV AI+  T
Sbjct: 193 TDTCISCG--ICAKVCPTGTISLSGDGKPEWADTCVQCVACIHRCPVRAIEYGT 244



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 38  DECIDCGVCEPECPVDAIKP--DTEPGL 63
           D CI CG+C   CP   I    D +P  
Sbjct: 194 DTCISCGICAKVCPTGTISLSGDGKPEW 221


>gi|289449986|ref|YP_003475788.1| electron transport complex, RnfABCDGE type subunit B [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184533|gb|ADC90958.1| electron transport complex, RnfABCDGE type, B subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 283

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            CI C    CV  CP       +N   I   +C  C  C  +CP  AI P   P    
Sbjct: 227 ACIACG--ACVRSCPQKAIEIVDNHAVIDITKCTGCMTCVNKCPTSAILPQLIPAAAE 282



 Score = 40.9 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 16/42 (38%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            DC   CP D     +N   I  D C  C  C   CP   IK
Sbjct: 157 GDCAAACPFDAIRVIDNLAVIRSDMCKGCKKCVSVCPQKIIK 198


>gi|260174482|ref|ZP_05760894.1| ferredoxin [Bacteroides sp. D2]
 gi|315922749|ref|ZP_07918989.1| ferredoxin [Bacteroides sp. D2]
 gi|313696624|gb|EFS33459.1| ferredoxin [Bacteroides sp. D2]
          Length = 321

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP + I
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNTI 265



 Score = 40.9 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|255305705|ref|ZP_05349877.1| putative reductase [Clostridium difficile ATCC 43255]
          Length = 273

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGCG--MCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRESFELEP 75



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++C+ CG+CE +C V+AI
Sbjct: 1  MIDINLEKCVGCGMCESDCLVNAI 24


>gi|255099820|ref|ZP_05328797.1| putative reductase [Clostridium difficile QCD-63q42]
          Length = 273

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGCG--MCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRESFELEP 75



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++C+ CG+CE +C V+AI
Sbjct: 1  MIDINLEKCVGCGMCESDCLVNAI 24


>gi|215488185|ref|YP_002330616.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312964856|ref|ZP_07779096.1| hydrogenase-4 component A [Escherichia coli 2362-75]
 gi|215266257|emb|CAS10686.1| predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312290412|gb|EFR18292.1| hydrogenase-4 component A [Escherichia coli 2362-75]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|153814817|ref|ZP_01967485.1| hypothetical protein RUMTOR_01032 [Ruminococcus torques ATCC 27756]
 gi|317500336|ref|ZP_07958561.1| RnfB/polyferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089655|ref|ZP_08338554.1| hypothetical protein HMPREF1025_02137 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847848|gb|EDK24766.1| hypothetical protein RUMTOR_01032 [Ruminococcus torques ATCC 27756]
 gi|316898277|gb|EFV20323.1| RnfB/polyferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405023|gb|EGG84561.1| hypothetical protein HMPREF1025_02137 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 268

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
            +  CV+ CP D  +  +    +  + C  CG C   CP   I+       + +++ NS 
Sbjct: 146 GYGSCVDACPFDAIHIVDGIAVVDKEACKACGKCVDACPKHLIE-LIPYKQKTFVQCNSN 204



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    C   C             I  D+C +CGVC  +CP
Sbjct: 218 CIGC--RLCERNCEAGAITVNNFLAHIDADKCTNCGVCAEKCP 258


>gi|254974321|ref|ZP_05270793.1| putative reductase [Clostridium difficile QCD-66c26]
 gi|255091717|ref|ZP_05321195.1| putative reductase [Clostridium difficile CIP 107932]
 gi|255313445|ref|ZP_05355028.1| putative reductase [Clostridium difficile QCD-76w55]
 gi|255516133|ref|ZP_05383809.1| putative reductase [Clostridium difficile QCD-97b34]
 gi|255649229|ref|ZP_05396131.1| putative reductase [Clostridium difficile QCD-37x79]
 gi|260682403|ref|YP_003213688.1| putative reductase [Clostridium difficile CD196]
 gi|260686002|ref|YP_003217135.1| putative reductase [Clostridium difficile R20291]
 gi|306519331|ref|ZP_07405678.1| putative reductase [Clostridium difficile QCD-32g58]
 gi|260208566|emb|CBA61245.1| putative reductase [Clostridium difficile CD196]
 gi|260212018|emb|CBE02566.1| putative reductase [Clostridium difficile R20291]
          Length = 273

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGCG--MCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRESFELEP 75



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++C+ CG+CE +C V+AI
Sbjct: 1  MIDINLEKCVGCGMCESDCLVNAI 24


>gi|83590433|ref|YP_430442.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
 gi|83573347|gb|ABC19899.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
          Length = 315

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C    C   CP  C    E     +   C  CG+C   CP  A+    E   + 
Sbjct: 259 EACTEC--YTCWIYCPDSCITRTEEGPVFNMKYCKGCGLCTAVCPSGALTNVPELDFKD 315


>gi|20089354|ref|NP_615429.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19914246|gb|AAM03909.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 59

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V  E C  C    CVE CPV+     E      +  DEC+DCG CE  CPV AIK +
Sbjct: 5  VNKEECTACG--TCVEECPVEAIVIDEDAGCAVVDEDECVDCGACEEACPVGAIKTE 59


>gi|57642013|ref|YP_184491.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160337|dbj|BAD86267.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 7  ENCILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CI C    CV VCP         + EG   ++++  +C  C  CE  CP  AIK
Sbjct: 27 ELCIGCG--ACVNVCPAGALQAIDDYMEGIRKISLNIGKCTPCTRCEEVCPTGAIK 80



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI CG C   CP  A++   +
Sbjct: 24 IDPELCIGCGACVNVCPAGALQAIDD 49


>gi|126173201|ref|YP_001049350.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125996406|gb|ABN60481.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 490

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++
Sbjct: 289 DCVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYM 341

Query: 68  KIN 70
             N
Sbjct: 342 SEN 344


>gi|319957489|ref|YP_004168752.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitratifractor salsuginis DSM 16511]
 gi|319419893|gb|ADV47003.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Nitratifractor salsuginis DSM 16511]
          Length = 187

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C +  C EVCP    Y  EN +  +  ++CI C  C   CP DA   D  
Sbjct: 64  CQHCDNAPCQEVCPTHATYYDENGVVRVDSNKCILCSYCMNACPYDARYVDDR 116


>gi|308051297|ref|YP_003914863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633487|gb|ADN77789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 562

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD--TEPGLELWLK 68
            C  T C+ VCP D     ++ + + P  C   G C   CP  A+  D  T   L+ ++K
Sbjct: 197 GC--TRCLNVCPADAIESVDHKITVDPHLCHGAGSCTAACPTGALSYDQPTPAILKDYVK 254

Query: 69  --INS--EYATQWPNITTKKESLPSAA 91
             +    E + Q P +    +S   AA
Sbjct: 255 RLLTRYLELSDQRPAVVLHDDSAGEAA 281



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    C  +CP     +G +   L      C+ CG+CE  CP  AI
Sbjct: 425 VDVDKCTLC--MSCAALCPSRALMDGGDSPALKFTEQACVQCGLCERACPEKAI 476


>gi|238620942|ref|YP_002915768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|238382012|gb|ACR43100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 280

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 147


>gi|256826664|ref|YP_003150623.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582807|gb|ACU93941.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 179

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C+   C  VCP    + G + +  +    CI C  C   CP      D E G
Sbjct: 53  TVPLQCMHCEDAPCAAVCPTGAAHIGADGIVAVDEGRCIGCKYCMAACPYQVRVCDEETG 112


>gi|224367324|ref|YP_002601487.1| Fdx4 [Desulfobacterium autotrophicum HRM2]
 gi|223690040|gb|ACN13323.1| Fdx4 [Desulfobacterium autotrophicum HRM2]
          Length = 143

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M++++ E CI C    C ++CP      E +    I  D CI C  C   CP  +++ 
Sbjct: 1  MSFIINETCIGCG--ACTKICPSGAITGEKQELHTIDTDLCIQCRACGTVCPTGSVED 56



 Score = 42.1 bits (98), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP---------DECIDCGVCEPECPVDAIKPDT 59
           C+ C  T CVE CP       ++  +  P           CI CG CE ECPV AI    
Sbjct: 80  CMAC--TICVEACPTGAICL-DDPTSKDPHAYPALANEKRCIGCGFCEKECPVGAITMAA 136

Query: 60  EPG 62
              
Sbjct: 137 PVE 139



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             I  + CI CG C   CP  AI  + + 
Sbjct: 1  MSFIINETCIGCGACTKICPSGAITGEKQE 30


>gi|254475969|ref|ZP_05089355.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
 gi|214030212|gb|EEB71047.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|153870634|ref|ZP_01999994.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Beggiatoa sp. PS]
 gi|152072901|gb|EDN70007.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Beggiatoa sp. PS]
          Length = 725

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPD 58
           E C  CK   C   CP     E E      +   C  CG C   CPV  I  +
Sbjct: 518 EGCTQCK--RCTVECPFGAINEDEKRYPLFNEARCRRCGTCMGACPVRVISFE 568



 Score = 33.6 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTE 60
            + C  C  C  ECP  AI  D +
Sbjct: 517 KEGCTQCKRCTVECPFGAINEDEK 540


>gi|150006892|ref|YP_001301635.1| hypothetical protein BDI_0228 [Parabacteroides distasonis ATCC
           8503]
 gi|262384359|ref|ZP_06077494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|149935316|gb|ABR42013.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|262294062|gb|EEY81995.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 258

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ CI C    C +VCP        +      D C+ C  C   CPV AI+  T
Sbjct: 193 TDTCISCG--ICAKVCPTGTISLSGDGKPEWADTCVQCVACIHRCPVRAIEYGT 244



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 38  DECIDCGVCEPECPVDAIKP--DTEPGL 63
           D CI CG+C   CP   I    D +P  
Sbjct: 194 DTCISCGICAKVCPTGTISLSGDGKPEW 221


>gi|118474172|ref|YP_891448.1| ferredoxin [Campylobacter fetus subsp. fetus 82-40]
 gi|118413398|gb|ABK81818.1| ferredoxin [Campylobacter fetus subsp. fetus 82-40]
          Length = 83

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++T++CI C    C E CP +  YE +    I PD C +C        C   CPVD 
Sbjct: 1  MSLMITKDCISCD--ACREECPDEAIYEDDPTYMIDPDRCSECISDYAEPACIVICPVDC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IVPDPD 64


>gi|88799940|ref|ZP_01115512.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea
           sp. MED297]
 gi|88777371|gb|EAR08574.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea
           sp. MED297]
          Length = 196

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 110 DECIGC--TKCIQACPVDAILGAAKQMHTVIESECTGCDLCVEPCPVDCI 157



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
                 I  DECI C  C   CPVDAI
Sbjct: 101 TPQVAIIREDECIGCTKCIQACPVDAI 127


>gi|308274764|emb|CBX31363.1| hypothetical protein N47_E48750 [uncultured Desulfobacterium sp.]
          Length = 1412

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIH-PDECIDCGVCEPECPVDAI 55
            V  + CI C    C E+CP        +EG+   A + P  C  CG+C   CP  AI
Sbjct: 1340 VDAQKCIGCGL--CAEICPFGGIIMEDFEGKGQRAKNVPASCKGCGLCAASCPQKAI 1394



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 35   IHPDECIDCGVCEPECPVDAIKPDT 59
            +   +CI CG+C   CP   I  + 
Sbjct: 1340 VDAQKCIGCGLCAEICPFGGIIMED 1364


>gi|304410442|ref|ZP_07392060.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS183]
 gi|307304534|ref|ZP_07584284.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           BA175]
 gi|304350926|gb|EFM15326.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS183]
 gi|306911936|gb|EFN42360.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           BA175]
          Length = 490

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++
Sbjct: 289 DCVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKPNLIGYM 341

Query: 68  KIN 70
             N
Sbjct: 342 SEN 344


>gi|258593528|emb|CBE69869.1| Iron-sulfur cluster-binding protein; potential subunit of aldehyde
           oxidoreductase [NC10 bacterium 'Dutch sediment']
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIK 56
           +   C  C    C ++CP       ++++   +  D+C+ C +C   CP  AI+
Sbjct: 49  IPTACTQCTEAWCAKICPTTAILRNDDYMAYYVVDDKCVGCKMCVLACPFGAIE 102


>gi|317153046|ref|YP_004121094.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943297|gb|ADU62348.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 701

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           E C+      CV  C       G +    + P  C  CG C   CP   I
Sbjct: 136 EGCLGLG--TCVTACQFGAIEMGPDGYPVVDPALCTACGACAQVCPRGVI 183


>gi|257466645|ref|ZP_05630956.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 312

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI C    C   CP        N   I P +C +C +C   CP  AI 
Sbjct: 217 ACIGCG--MCQRTCPFGAIEVSNNLAKIDPAKCKNCQLCVVVCPTKAIY 263



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            + DC  VCPV      E  + ++  + CI CG+C   CP   I
Sbjct: 145 GYGDCERVCPVGAIVVNEKGIASVDEEACISCGLCVKACPKSVI 188



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-------NFLAIHPD---------ECIDCGVCE 47
           V  E CI C    CV+ CP                 ++              CI CG+C+
Sbjct: 168 VDEEACISCGL--CVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQ 225

Query: 48  PECPVDAIK 56
             CP  AI+
Sbjct: 226 RTCPFGAIE 234


>gi|251771493|gb|EES52070.1| putative ferredoxin [Leptospirillum ferrodiazotrophum]
          Length = 84

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+ ++ +NCI C    C+  CP D   EG+    I PD C +C        C   CP+D 
Sbjct: 1  MSILIADNCISCG--ACLPECPNDAISEGDPIYVIDPDLCTECIGFHDEPQCAAVCPIDE 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPN 79
                  +E   ++ ++ A   PN
Sbjct: 59 CCIPDPNCVETEEQLLAKKARIHPN 83


>gi|222099246|ref|YP_002533814.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
          DSM 4359]
 gi|221571636|gb|ACM22448.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
          DSM 4359]
          Length = 507

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 3  YVVTEN---CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          +VV  +   CI C    CV VC      + E  N +     +C+ C  CE  CP +AI
Sbjct: 10 FVVERDDYKCIRCL--ACVRVCSYGANYYDENANRVYTENYKCVGCHFCEAICPTEAI 65


>gi|189404540|ref|ZP_02790135.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4501]
 gi|189405452|ref|ZP_02815504.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC869]
 gi|217328744|ref|ZP_03444825.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. TW14588]
 gi|189365011|gb|EDU83427.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4501]
 gi|189370046|gb|EDU88462.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC869]
 gi|217318091|gb|EEC26518.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. TW14588]
 gi|320188358|gb|EFW63020.1| NrfC-like protein [Escherichia coli O157:H7 str. EC1212]
 gi|326342037|gb|EGD65818.1| NrfC-like protein [Escherichia coli O157:H7 str. 1044]
          Length = 184

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|229580939|ref|YP_002839338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284999038|ref|YP_003420806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|228011655|gb|ACP47416.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|284446934|gb|ADB88436.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 280

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 95  YNIPINCFHCVNAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 147


>gi|152981481|ref|YP_001352407.1| electron transport complex protein RnfB [Janthinobacterium sp.
           Marseille]
 gi|151281558|gb|ABR89968.1| electron transport complex protein RnfB [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT-- 59
           V+ E+ CI C  T C++ CPVD        +  I  D C  C +C   CPVD I      
Sbjct: 86  VIDESLCIGC--TLCIQACPVDAIVGAAKQMHTIVNDLCTGCDLCVAPCPVDCIAMVEVT 143

Query: 60  --EPGLELWLKINSEYAT 75
             + G + W +  ++ A 
Sbjct: 144 PGKTGWDAWSQAQADDAR 161


>gi|153006362|ref|YP_001380687.1| hydrogenase 2 protein HybA [Anaeromyxobacter sp. Fw109-5]
 gi|152029935|gb|ABS27703.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 293

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            +V  + C+ C    CV VC +   ++GE  +       C+ C  C+  CP +  + 
Sbjct: 100 AFVKAQ-CMHCADPACVSVCMLGALHKGERGVVAYDVSRCVGCRYCQVACPFNVPRF 155


>gi|189500784|ref|YP_001960254.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189496225|gb|ACE04773.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 359

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 12  CKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV        +G+  L I  ++C+ CG C   CP   I         +W+
Sbjct: 205 CELPKVVARCPVAAIRPTVVDGKKSLVIDEEKCMYCGACFGACPSMEINHPEYSRFAIWV 264

Query: 68  KINSEYATQWPNI 80
              +  A   P +
Sbjct: 265 AGKNSNARSKPTL 277


>gi|307720654|ref|YP_003891794.1| nitrate reductase (quinol-dependent), transmembrane subunit
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978747|gb|ADN08782.1| nitrate reductase (quinol-dependent), transmembrane subunit
           [Sulfurimonas autotrophica DSM 16294]
          Length = 521

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
           +C  C   +C+  CP +      E  + +H D  CI C  C   CP        E
Sbjct: 88  SCNHCIDPECLIGCPTESYIKIAETGIVVHDDDTCIGCQYCTWNCPYGVPVFHEE 142


>gi|302534962|ref|ZP_07287304.1| cytochrome c nitrite reductase, Fe-S protein [Streptomyces sp. C]
 gi|302443857|gb|EFL15673.1| cytochrome c nitrite reductase, Fe-S protein [Streptomyces sp. C]
          Length = 209

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +    D   CI C  C   CP    K D +  L+
Sbjct: 63  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCANCVNACPFGVPKIDLQAKLQ 122


>gi|229523599|ref|ZP_04413004.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229337180|gb|EEO02197.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 570

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 434 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 482



 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 206 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 264



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 183 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 230


>gi|257792125|ref|YP_003182731.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317488744|ref|ZP_07947279.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833021|ref|ZP_08165648.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
 gi|257476022|gb|ACV56342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316912151|gb|EFV33725.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485738|gb|EGC88203.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1
           [Eggerthella sp. HGA1]
          Length = 208

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVD 53
           +   C  C++  CV+VCPV   Y+     A+    D+CI C +C   CP  
Sbjct: 62  IAVACQHCENPACVKVCPVGATYKDPETGAVRQDYDKCIGCRMCMSACPYT 112


>gi|226329954|ref|ZP_03805472.1| hypothetical protein PROPEN_03867 [Proteus penneri ATCC 35198]
 gi|225200749|gb|EEG83103.1| hypothetical protein PROPEN_03867 [Proteus penneri ATCC 35198]
          Length = 294

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 4  VVTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK-- 56
          ++ + C+  +        C +VCPV         + I  + C  CG C   CPVDAI+  
Sbjct: 14 IINDKCVRKRLKQSLCDSCSKVCPVGAITFAHLDVKIDNERCFQCGNCLFTCPVDAIENI 73

Query: 57 -PDTEPGLELWLKIN 70
           P      + +L +N
Sbjct: 74 APHERTYQDNYLVVN 88



 Score = 40.5 bits (94), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           TE CILC  + C +VC         N   +    C  C  CE  C
Sbjct: 196 TETCILC--SACAKVCDEGAIELENNIFTLDEKRCTGCMSCEVVC 238


>gi|212636841|ref|YP_002313366.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212558325|gb|ACJ30779.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 227

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV+VCP       +    +A++ D C+ C  C   CP  
Sbjct: 95  SCQHCEAAPCVKVCPTGAAYIDKETGIVAVNEDRCVGCQYCIAACPYQ 142


>gi|171186440|ref|YP_001795359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoproteus neutrophilus V24Sta]
 gi|170935652|gb|ACB40913.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoproteus neutrophilus V24Sta]
          Length = 96

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C  C+   C  +CP  C+ +  + + +  + C++CG C   CP D I  D  
Sbjct: 34 CKRCEKKPCTYMCPAKCYVQQGDGVVLSTEACVECGTCRVVCPYDNIDWDYP 85


>gi|15922151|ref|NP_377820.1| thiosulfate reductase electron transport protein PhsB [Sulfolobus
           tokodaii str. 7]
 gi|15622939|dbj|BAB66929.1| 270aa long hypothetical thiosulfate reductase electron transport
           protein phsB [Sulfolobus tokodaii str. 7]
          Length = 270

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C +  CV VCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 87  YNIPINCFHCMNAPCVPVCPVGATFKREEDGIVLVDYNECIGTKYCIYACPYG 139


>gi|114330933|ref|YP_747155.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91]
 gi|122314151|sp|Q0AHJ2|NUOI_NITEC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114307947|gb|ABI59190.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPALAITIESEQRDDGTRRTTRYDIDLIKCIFCGFCEEACPVDAI 117



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRDD 87


>gi|99080595|ref|YP_612749.1| NADH dehydrogenase subunit I [Ruegeria sp. TM1040]
 gi|115502544|sp|Q1GIM9|NUOI_SILST RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|99036875|gb|ABF63487.1| NADH-quinone oxidoreductase chain I [Ruegeria sp. TM1040]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI 
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 120

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   A
Sbjct: 121 EGPNFEFATETREELFYDKDKLLA 144


>gi|315633731|ref|ZP_07889021.1| thiosulfate reductase electron transporter phsb [Aggregatibacter
           segnis ATCC 33393]
 gi|325577752|ref|ZP_08148027.1| thiosulfate reductase electron transporter phsb [Haemophilus
           parainfluenzae ATCC 33392]
 gi|315477773|gb|EFU68515.1| thiosulfate reductase electron transporter phsb [Aggregatibacter
           segnis ATCC 33393]
 gi|325160497|gb|EGC72623.1| thiosulfate reductase electron transporter phsb [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 225

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDPETGIVDVHKDLCVGCQYCVAVCPY 139


>gi|300087835|ref|YP_003758357.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527568|gb|ADJ26036.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1008

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAI 55
           V+ ENC  C +  CV+ CP D     E          +   P +C  CGVC   CP   I
Sbjct: 930 VLDENCDGCAY--CVDPCPYDAISLLEYNFKGGLKKTVEADPAKCHGCGVCMATCPKKGI 987



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 29/86 (33%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECI------DCG 44
           C  C    C+E CP     E +  L                   I  D CI       C 
Sbjct: 109 CTGCNV--CIEKCPAKTESEFDRGLAKRKAIYTLYSQAVPNVPVIDKDNCIFFKKGKGCR 166

Query: 45  VCEPECPVDAIKPDTEPGLELWLKIN 70
            CE  C  +A+  D +      ++IN
Sbjct: 167 ACEMFCEANAVLLDQQDEE---IEIN 189


>gi|206895585|ref|YP_002247843.1| 4Fe-4S binding domain protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738202|gb|ACI17280.1| 4Fe-4S binding domain protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 128

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C    C E CP            +    +CI C  C P C V AI  D + 
Sbjct: 49  CVGCSDPACAEACPTQALTPRPGGGVLFDAKKCIGCEKCVPACIVGAIAMDKQA 102



 Score = 34.4 bits (78), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C+   CV  C V       +  A  P  C  CG C   CP + +  + 
Sbjct: 81  CIGCE--KCVPACIVGAIAM--DKQAKKPIICKQCGACVQLCPHECLAMEE 127


>gi|39937317|ref|NP_949593.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009]
 gi|81619360|sp|Q6N1Z5|NUOI2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|39651175|emb|CAE29698.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris
           CGA009]
          Length = 173

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C                +  ++   CI CG CE  CP  AI+
Sbjct: 51  ERCVACNL--CATVCPVGCIDLAKAVADDGRWYPEYFRVNFARCIFCGFCEDACPTAAIQ 108

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 109 LTPDYELSEW 118


>gi|193061679|ref|ZP_03042776.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|193068566|ref|ZP_03049528.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194427429|ref|ZP_03059978.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|218556134|ref|YP_002389047.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI1]
 gi|260846712|ref|YP_003224490.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli O103:H2 str. 12009]
 gi|300902766|ref|ZP_07120721.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|301304628|ref|ZP_07210737.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|192932469|gb|EDV85066.1| 4Fe-4S binding domain protein [Escherichia coli E22]
 gi|192958217|gb|EDV88658.1| 4Fe-4S binding domain protein [Escherichia coli E110019]
 gi|194414469|gb|EDX30742.1| 4Fe-4S binding domain protein [Escherichia coli B171]
 gi|218362902|emb|CAR00537.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli IAI1]
 gi|257761859|dbj|BAI33356.1| predicted hydrogenase, 4Fe-4S ferredoxin-type component
           [Escherichia coli O103:H2 str. 12009]
 gi|300405194|gb|EFJ88732.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300840106|gb|EFK67866.1| 4Fe-4S binding domain protein [Escherichia coli MS 124-1]
 gi|315254104|gb|EFU34072.1| 4Fe-4S binding domain protein [Escherichia coli MS 85-1]
 gi|323160657|gb|EFZ46596.1| iron-sulfur protein [Escherichia coli E128010]
          Length = 157

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPV+        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVNAISREHGHIFVEQTRCIGCKSCMLACPFGAME 105


>gi|332560813|ref|ZP_08415131.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           WS8N]
 gi|332274611|gb|EGJ19927.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           WS8N]
          Length = 188

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  ++C  C    C + CP D        +  +  D CI C  C   CP +AI    +
Sbjct: 106 AFIFEDHCTGC--MRCFKRCPTDAIIGANRQIHTVVTDACIGCNACIEACPTEAIVARVK 163

Query: 61  P 61
           P
Sbjct: 164 P 164


>gi|323702968|ref|ZP_08114625.1| Cobyrinic acid ac-diamide synthase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532099|gb|EGB21981.1| Cobyrinic acid ac-diamide synthase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 282

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C  C    C EVC  +     +  L I PD C  CG C   CP  A++P
Sbjct: 68  EKCQYCG--KCAEVCQFNAIALMKRTLVIFPDVCHSCGGCWHLCPTGALEP 116


>gi|310780590|ref|YP_003968921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309749913|gb|ADO84573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 59

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y + E+ CI C    C  VCPV+C  E E     I    CIDCG C   CPVD I P
Sbjct: 1  MSYRINEDECIACG--ACEPVCPVECISEVEGGKRRIDEAVCIDCGACAGVCPVDCIAP 57


>gi|300727612|ref|ZP_07061001.1| ferredoxin [Prevotella bryantii B14]
 gi|299775132|gb|EFI71735.1| ferredoxin [Prevotella bryantii B14]
          Length = 305

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    C +VC  +      N   I  ++C  C  C  ECP  AI
Sbjct: 221 TAACIGCG--KCQKVCKFEAITIENNLSYIDFNKCRMCTKCVDECPTGAI 268



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 21/82 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY------EGENFLA--IHPDE-----------CIDCG 44
           V  E C  C    C + CP           +G       ++ D+           CI CG
Sbjct: 171 VDEEKCTSCG--ACTKACPRHIIELRKKGPKGRRVYVQCVNKDKGAVARKSCTAACIGCG 228

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
            C+  C  +AI  +       +
Sbjct: 229 KCQKVCKFEAITIENNLSYIDF 250


>gi|298377317|ref|ZP_06987270.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298265731|gb|EFI07391.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 256

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T+ CI C    C +VCP        +      D C+ C  C   CPV AI+  T
Sbjct: 191 TDTCISCG--ICAKVCPTGTISLSGDGKPEWADTCVQCVACIHRCPVRAIEYGT 242



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 38  DECIDCGVCEPECPVDAIKP--DTEPGL 63
           D CI CG+C   CP   I    D +P  
Sbjct: 192 DTCISCGICAKVCPTGTISLSGDGKPEW 219


>gi|291166809|gb|EFE28855.1| iron-sulfur cluster-binding protein [Filifactor alocis ATCC 35896]
          Length = 288

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           TE C  CK   CV  CPV+ F   +N   +   P  CI C  C  +CP  A+
Sbjct: 211 TEKCTGCK--RCVAACPVNMFAYIDNTIQMVRDPKYCILCAECYHQCPAKAV 260



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 31  NFLAIHPDECIDCGVCEPECPVD 53
             + I+ ++C  C  C   CPV+
Sbjct: 205 KKVTINTEKCTGCKRCVAACPVN 227


>gi|283850899|ref|ZP_06368185.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio sp. FW1012B]
 gi|283573822|gb|EFC21796.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio sp. FW1012B]
          Length = 187

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV+C      EG +         I+   CI CG+CE  CP  AI+
Sbjct: 66  ERCVAC--YLCSGVCPVNCISMQSEEGPDGRRQAAWFRINFARCIYCGLCEEACPTLAIQ 123


>gi|251791770|ref|YP_003006491.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dickeya zeae Ech1591]
 gi|247540391|gb|ACT09012.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 177

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  C  VCP D     ++ + +    CI C  C   CP  AI
Sbjct: 57  CHQCENAPCASVCPHDALVRHQDSIQVIQSRCIGCKSCVIACPFGAI 103


>gi|224540171|ref|ZP_03680710.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518205|gb|EEF87310.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 600

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          +T+  + C    C +VC  D        EG  +  +  D+C DCG+CE  CP+
Sbjct: 4  ITDKAMCCGCNACGDVCAHDAITFRTDIEGFWYPEVDKDKCTDCGLCERVCPI 56


>gi|215486805|ref|YP_002329236.1| electron transport complex protein RnfB [Escherichia coli O127:H6
           str. E2348/69]
 gi|312966608|ref|ZP_07780828.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 2362-75]
 gi|254807923|sp|B7URW9|RNFB_ECO27 RecName: Full=Electron transport complex protein rnfB
 gi|215264877|emb|CAS09263.1| predicted iron-sulfur protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288718|gb|EFR16618.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 2362-75]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-- 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I   
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  --PDTEPGLEL 65
              +T    + 
Sbjct: 166 PVAETPDSWKW 176


>gi|172036813|ref|YP_001803314.1| transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171698267|gb|ACB51248.1| probable transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 532

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+Y ++E+C  C    C   CP D          I  + C +C G      C  +CP+ +
Sbjct: 1  MSYTISESCPSCN--SCQIDCPTDAIQTENGEYWIDQERCNNCEGYYQEPQCIVQCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PTP 61


>gi|108760337|ref|YP_632055.1| oxidoreductase iron-sulfur binding subunit [Myxococcus xanthus DK
           1622]
 gi|108464217|gb|ABF89402.1| oxidoreductase, iron-sulfur binding subunit [Myxococcus xanthus DK
           1622]
          Length = 988

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPV 52
           V+T+   C+ C++  C  VCPV       EG N +  +   C+    C   CP 
Sbjct: 814 VITQPLMCVHCEYAPCEYVCPVAATVHSDEGLNQMVYN--RCVGTRYCSNNCPY 865


>gi|62897789|dbj|BAD96834.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) variant [Homo sapiens]
          Length = 210

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + CI C +CE  CP  AI  + EP
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEP 132



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|11497967|ref|NP_069191.1| ferredoxin (fdx-3) [Archaeoglobus fulgidus DSM 4304]
 gi|2650288|gb|AAB90887.1| ferredoxin (fdx-3) [Archaeoglobus fulgidus DSM 4304]
          Length = 69

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  VV    C  C    CV+ CPV    E  ++  +  + C +CG C   CP +AI  +
Sbjct: 14 MPAVVDASLCDGCG--TCVDECPVGAI-ELNDYAHVDEEICTECGACVDVCPTEAISLE 69


>gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
 gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           ++  E C  C  T C   CPV      +  +  I    CI CGVC  +CP
Sbjct: 571 HIDPEKCTGC--TACARACPVSAISGEKRQVHQIDQALCIRCGVCLEKCP 618



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CP  C  +      I P++C  C  C   CPV AI  +     +
Sbjct: 557 KACPA-CACKDLISFHIDPEKCTGCTACARACPVSAISGEKRQVHQ 601


>gi|4505371|ref|NP_002487.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Homo sapiens]
 gi|115392037|ref|NP_001065248.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Pan troglodytes]
 gi|2499325|sp|O00217|NDUS8_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; AltName: Full=TYKY
           subunit; Flags: Precursor
 gi|115502491|sp|Q0MQI3|NDUS8_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|269969396|sp|P0CB98|NDUS8_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|1935056|gb|AAB51776.1| mitochondrial NADH dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa
           subunit precursor [Homo sapiens]
 gi|3523123|gb|AAC34273.1| NADH dehydrogenase-ubiquinone Fe-S protein 8 23 kDa subunit [Homo
           sapiens]
 gi|110645822|gb|AAI19755.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
 gi|111661817|gb|ABH12160.1| mitochondrial complex I subunit NDUFS8 [Pan troglodytes]
 gi|111661821|gb|ABH12162.1| mitochondrial complex I subunit NDUFS8 [Pongo pygmaeus]
 gi|119595093|gb|EAW74687.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_c [Homo
           sapiens]
 gi|189069467|dbj|BAG37133.1| unnamed protein product [Homo sapiens]
          Length = 210

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|332286874|ref|YP_004418785.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pusillimonas sp. T7-7]
 gi|330430827|gb|AEC22161.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pusillimonas sp. T7-7]
          Length = 81

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE CI C    C   CP +  Y G     I P +C +C        C+  CPV+ 
Sbjct: 1  MALRITEECINCDV--CEPQCPNNAIYMGAEIYEIEPAKCTECVGHFDEPQCQVVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I  D +   + 
Sbjct: 59 IIFDLDHPEDQ 69


>gi|327398530|ref|YP_004339399.1| glycyl-radical enzyme activating protein family [Hippea maritima
          DSM 10411]
 gi|327181159|gb|AEA33340.1| glycyl-radical enzyme activating protein family [Hippea maritima
          DSM 10411]
          Length = 298

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + CI C    C  VC  D      N + I+   C  CG C   CP +A++
Sbjct: 52 QKCIRCL--TCKAVCKEDAISFTNNKIEINTKRCTMCGKCWQSCPTNALE 99


>gi|320195003|gb|EFW69632.1| putative oxidoreductase, Fe-S subunit [Escherichia coli WV_060327]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|309781571|ref|ZP_07676306.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA]
 gi|308919676|gb|EFP65338.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA]
          Length = 708

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C    CV+VC          +G   + + P+ C+ CG C   CP  AI     
Sbjct: 323 VGCN--ACVDVCSASAIASQWKDGRGSVHVTPNLCVGCGACTTACPTGAITYAYP 375



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV  CP     +      LA+    C+ CG+CE  CP  AI
Sbjct: 575 VNRERCTLC--MACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAI 626



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           + C  C    C++VCP       +    I  D C D   C   C
Sbjct: 198 DRCTRCN--ACIDVCPEGAI---DALYQIDLDACRDHRACVKAC 236



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 195 IDLDRCTRCNACIDVCPEGAI 215


>gi|241764087|ref|ZP_04762125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
          delafieldii 2AN]
 gi|241366618|gb|EER61099.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
          delafieldii 2AN]
          Length = 85

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T+ CI C    C   CP      G+    I PD+C +C        C   CPV  
Sbjct: 1  MALRITDECINCDV--CEPECPNQAITLGQEIYEIDPDKCTECVGHFDEPQCVQLCPVSC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPVD 62


>gi|226940150|ref|YP_002795223.1| RnfB2 [Laribacter hongkongensis HLHK9]
 gi|226715076|gb|ACO74214.1| RnfB2 [Laribacter hongkongensis HLHK9]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           CI C  T C++ CPVD        +  I   EC  C +C   CPVD I+ +
Sbjct: 116 CIGC--TLCIQACPVDAILGSAKQMHTILSSECTGCELCLEPCPVDCIRME 164



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 110 VIDETTCIGCTLCIQACPVDAI 131


>gi|222445638|ref|ZP_03608153.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349811|ref|ZP_05975228.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii
           DSM 2374]
 gi|222435203|gb|EEE42368.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860596|gb|EFC92894.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii
           DSM 2374]
          Length = 662

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY---EGENFL---------------AIHPDECIDCG 44
           YV+ E+C  C    CVE CP++      EG   +                I  D CI+C 
Sbjct: 248 YVIEEDCTGCG--SCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKDYCIECM 305

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C+  C   AI  + +P  
Sbjct: 306 LCDQACERGAIDHNQQPSE 324



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C       CVE+CP        +       I+   C  CG C   CP  A+    
Sbjct: 589 VICGAC-----EVCVELCPYGAISITGDDNAAHAEINAALCKGCGTCVGACPSGAMDQQH 643

Query: 60  EPGLELWLKINSEY 73
               ++  +I++  
Sbjct: 644 FKTDQIMAQISAAL 657


>gi|218884559|ref|YP_002428941.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n]
 gi|218766175|gb|ACL11574.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n]
          Length = 602

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 17 CVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          C+  CPV+               ++ I+ + CI CG+C  +CP +AI     P     +
Sbjct: 21 CIRFCPVNRGKRKKAIELSSDGKYVIIYEETCIGCGICVKKCPFNAISIVNLPDELEKI 79


>gi|24371702|ref|NP_715744.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Shewanella oneidensis MR-1]
 gi|24345478|gb|AAN53189.1|AE015461_7 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Shewanella oneidensis MR-1]
          Length = 304

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C++ C       +  N       D+CI CG C   CP D
Sbjct: 98  ACMHCADPACLKACSTSGAIIQHANGTVDFDSDKCIGCGYCASACPFD 145


>gi|89893102|ref|YP_516589.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89332550|dbj|BAE82145.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 190

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            +  + +C  C+H  C E CP    ++      ++++ + CI C  C   CP  A + + 
Sbjct: 61  AFFTSISCNHCEHPKCTEACPSGAMHKDPETGIVSVNQNRCIGCRYCTWACPYGAPQYNK 120

Query: 60  EPG 62
           E G
Sbjct: 121 EAG 123


>gi|320182216|gb|EFW57119.1| putative oxidoreductase, Fe-S subunit [Shigella boydii ATCC 9905]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|313905900|ref|ZP_07839256.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium
           cellulosolvens 6]
 gi|313469241|gb|EFR64587.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium
           cellulosolvens 6]
          Length = 288

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C +VC  +     +  + +  D+C +CG C   CP DA
Sbjct: 163 DKCINCGL--CAKVCRENAVSITDGKVTVDQDKCNNCGRCVFSCPTDA 208


>gi|294636370|ref|ZP_06714759.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC
           23685]
 gi|291090358|gb|EFE22919.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC
           23685]
          Length = 576

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 7   ENCILCKHTDCVEVCPV----------DCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + CI C  + C +VCPV              E +   + H  ECI+CG C   CP +
Sbjct: 376 QPCIRC--SSCADVCPVRLLPQQLYWYSRGQEHDKARSHHLQECIECGACAYVCPSN 430


>gi|257126678|ref|YP_003164792.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           buccalis C-1013-b]
 gi|257050617|gb|ACV39801.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           buccalis C-1013-b]
          Length = 458

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 12/55 (21%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDE---------CIDCGVCEPECP 51
           E+CI C +  CVE CP++   +E  ++      E         CI+CG CE  CP
Sbjct: 383 ESCISCGY--CVEACPMNLMPFEFADYYEKGKYEKMIKANIQNCIECGACEFVCP 435



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 34  AIHPDECIDCGVCEPECPVD 53
            I  + CI CG C   CP++
Sbjct: 379 EIERESCISCGYCVEACPMN 398


>gi|224542036|ref|ZP_03682575.1| hypothetical protein CATMIT_01209 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525093|gb|EEF94198.1| hypothetical protein CATMIT_01209 [Catenibacterium mitsuokai DSM
           15897]
          Length = 379

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C + C  D          I+ D C  CG C   C  DAI+
Sbjct: 200 DLCRGC--RRCAKECGSDAITYENGKAVINQDICKGCGRCIGACAFDAIE 247


>gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 599

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C + CPV       G+    I  ++CI CG C   C  + I+
Sbjct: 548 DKCRKCGL--CAKQCPVGAISGELGKVPYVIDQEKCIKCGQCIKACHFNVIE 597



 Score = 41.7 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CP     E      I  D+C  CG+C  +CPV AI  + 
Sbjct: 532 CPAGVCKE-LLQYEIDEDKCRKCGLCAKQCPVGAISGEL 569


>gi|153813397|ref|ZP_01966065.1| hypothetical protein RUMOBE_03817 [Ruminococcus obeum ATCC 29174]
 gi|149830489|gb|EDM85580.1| hypothetical protein RUMOBE_03817 [Ruminococcus obeum ATCC 29174]
          Length = 62

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          TY +  +CI C    CV+VCP  C    +    I  ++C  CG C   CP  AI+   E
Sbjct: 6  TYYINTDCINCGL--CVKVCPEHCIDVYKKPAFIDQNKCRHCGACAEVCPPGAIRDWDE 62


>gi|139437056|ref|ZP_01771216.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC
          25986]
 gi|133776703|gb|EBA40523.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC
          25986]
          Length = 238

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFL------AIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C   CP D      +        +I    CI CG CE  CP++AIK
Sbjct: 37 AELCIACG--ACGVACPADAIRMDTDLAADTITWSIDYGRCIFCGRCEEACPMEAIK 91



 Score = 40.1 bits (93), Expect = 0.092,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          + + CI CG C   CP DAI+ DT+   +
Sbjct: 36 NAELCIACGACGVACPADAIRMDTDLAAD 64


>gi|86137588|ref|ZP_01056165.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
 gi|85825923|gb|EAQ46121.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
          Length = 165

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI 
Sbjct: 64  ERCIACKL--CEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 121

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   A
Sbjct: 122 EGPNFEFATETREELFYDKDKLLA 145


>gi|316933901|ref|YP_004108883.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris
           DX-1]
 gi|315601615|gb|ADU44150.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           DX-1]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 117


>gi|317154974|ref|YP_004123022.1| hypothetical protein Daes_3288 [Desulfovibrio aespoeensis Aspo-2]
 gi|316945225|gb|ADU64276.1| Protein of unknown function DUF2088 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 370

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           ENC  C    C+  C             +A++ + C+ CG C   C  DA+  + + G++
Sbjct: 193 ENCTGCG--SCLLACKTQALSLDAETGRIALNAERCVGCGGCFVACRFDALNVNWKIGIQ 250

Query: 65  LWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ 98
            +L+   EYA      T +K  L     MD V  
Sbjct: 251 EFLERMMEYALAV-VRTKRKPCLHINFVMDVVPD 283


>gi|262277293|ref|ZP_06055086.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
           HIMB114]
 gi|262224396|gb|EEY74855.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
           HIMB114]
          Length = 161

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP            +G        I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAACPAQAITIESEPKDDGSRKTTRYDIDMVKCIYCGLCQEACPVDAI 116



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
          P+   + GE+ L  +P   + CI C +CE  CP  AI  ++EP  +
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAACPAQAITIESEPKDD 86


>gi|99032241|pdb|2FGO|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Pseudomonas
          Aeruginosa
          Length = 82

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAIKPD 58
          +T++CI C    C   CP     +GE    I P+ C +C        C+  CPVD I  D
Sbjct: 4  ITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLD 61

Query: 59 T 59
           
Sbjct: 62 D 62


>gi|323254717|gb|EGA38525.1| putative dimethyl sulfoxide reductase [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
          Length = 138

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 11 LCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 2  HCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 49


>gi|321460435|gb|EFX71477.1| hypothetical protein DAPPUDRAFT_93364 [Daphnia pulex]
          Length = 183

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 82  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 138



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 82  ERCIACKLCEAICPAQAITIEAEPRAD 108



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 123 CIYCGF--CQEACPVDAIVEGPNF 144


>gi|312136954|ref|YP_004004291.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224673|gb|ADP77529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 412

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E CI C    CVE+CP        +     P+ C  CG+CE  CP DAI+ + + G
Sbjct: 214 EECIGCN--TCVEICPGGFIEPKSDLTVSLPEICPACGLCEKLCPTDAIELEVKLG 267



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C+ C    CV  CPV+          + I  ++CI CG+C   CP +++    +   +
Sbjct: 145 DCVGCGL--CVPECPVNAITLPKYGESIEIDEEKCIKCGICAQTCPWNSVYISGKKPQK 201



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 15/74 (20%)

Query: 9   CILCKHTDCVEVCPVDCF-YEG---ENFLAIHPDE------CIDCGVCEPECPVDAIKPD 58
           C+LC    CV VCP++    EG      + I  D+      C+ CG+C PECPV+AI   
Sbjct: 107 CVLC--QQCVNVCPIEVIGIEGVKEPARVEIKIDKPIYIVDCVGCGLCVPECPVNAI--- 161

Query: 59  TEPGLELWLKINSE 72
           T P     ++I+ E
Sbjct: 162 TLPKYGESIEIDEE 175



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++CI CG C+  CP  AI
Sbjct: 1  MIVINKEDCIRCGACQGVCPTGAI 24



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 12/66 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    C ++CP D               E  +  + + C  CG C   CP +AI+
Sbjct: 243 EICPACGL--CEKLCPTDAIELEVKLGPAKPVTEEGIVYNDENCKFCGRCALNCPNEAIR 300

Query: 57  PDTEPG 62
             +  G
Sbjct: 301 VVSPKG 306



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C + CP +  Y                 +  +ECI C  C   CP   I+
Sbjct: 175 EKCIKCG--ICAQTCPWNSVYISGKKPQKRSRTIENFTLDKEECIGCNTCVEICPGGFIE 232

Query: 57  PDTE 60
           P ++
Sbjct: 233 PKSD 236



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  +  E+CI C    C  VCP            I+ D C     C   CP DA++ + 
Sbjct: 1  MIVINKEDCIRCG--ACQGVCPTGAISVKPED-VIYCDMCGGEPKCVEACPNDALRHED 56


>gi|282865521|ref|ZP_06274572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282559565|gb|EFB65116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 200

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +    D   CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQEADTTRCIGCANCVNACPFGVPKIDLQAKLQ 112

Query: 65  L 65
           L
Sbjct: 113 L 113


>gi|322417935|ref|YP_004197158.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
 gi|320124322|gb|ADW11882.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
          Length = 447

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
          V   CI C    C   CPVD           +  ++CI C  C   CP +A++
Sbjct: 16 VDGRCIACCAR-CESSCPVDAIAMNPAGEPQVATEKCIGCVKCVKACPAEALE 67


>gi|291287134|ref|YP_003503950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884294|gb|ADD67994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 318

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVD 53
           C+ C    CV  CPV     E E  +     ++CI C  C+  CP +
Sbjct: 110 CMHCIKPSCVSACPVSAMEQEKERGIVFYDKNKCIGCRYCQIACPFN 156


>gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 774

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CILC    C + C  D   E  +   I  + C  C  C   CPV A+K
Sbjct: 570 ACILCGL--CRDACAFDAVRERRSSYFIDQEYCTKCKACFEICPVGAVK 616



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           G     I    CI CG+C   C  DA++ 
Sbjct: 560 GMGVFTIDQKACILCGLCRDACAFDAVRE 588


>gi|225574877|ref|ZP_03783487.1| hypothetical protein RUMHYD_02955 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037900|gb|EEG48146.1| hypothetical protein RUMHYD_02955 [Blautia hydrogenotrophica DSM
           10507]
          Length = 586

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E CI CK   C++  CP   + +    ++I   +C+ C VC   CP  AI  + +
Sbjct: 534 EKCIGCK--RCIKTGCPALAYDKKTKKVSIDKGQCVACDVCAQVCPKGAIGREEK 586


>gi|254524628|ref|ZP_05136683.1| nitrate reductase, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219722219|gb|EED40744.1| nitrate reductase, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 514

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSG 238


>gi|150400325|ref|YP_001324092.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150013028|gb|ABR55480.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus vannielii SB]
          Length = 579

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 2   TYVVTEN-CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           TYV+ EN C  CK   C+++ CP            I+   C+ CG+C+  C   AI  + 
Sbjct: 522 TYVIDENNCNGCKL--CLKIGCP--AISFDGKIARINTALCVGCGLCKDVCKFSAIDIEV 577

Query: 60  EP 61
           + 
Sbjct: 578 KQ 579


>gi|121997955|ref|YP_001002742.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121589360|gb|ABM61940.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 259

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C    C++ CP    ++ ++ L +  P  C  C +C P CP  A
Sbjct: 60  CQHCDEAPCIDACPTGAVFKRQDGLVLLEPALCSGCELCVPACPYGA 106


>gi|95931039|ref|ZP_01313767.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132935|gb|EAT14606.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 770

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 6   TENCILCKHTD----CVEVCPVDCFY--EGENF---LAIHPDECIDCGVCEPECP 51
           T  CI C        C+E CP       EG N           CI CG+C   CP
Sbjct: 706 TTRCISCGTCRDCSMCLEACPEAAIRRIEGPNGTFEYVSDDHVCIGCGICAGLCP 760


>gi|323698804|ref|ZP_08110716.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio sp. ND132]
 gi|323458736|gb|EGB14601.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio desulfuricans ND132]
          Length = 678

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 25/87 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECI--- 41
           YV  + C  C    C+E CP     E    L                   I  D C    
Sbjct: 238 YVKEDVCTGCG--ACLEKCPTKAISEFNEGLGFRKAIYRNSPQAVPNTPVIDGDACKMIT 295

Query: 42  --DCGVCEPECPVDAIKPDTEPGLELW 66
              CGVC+  CP  AI  D +   E++
Sbjct: 296 KGKCGVCQKICPTGAIDYDMKESREVF 322



 Score = 44.0 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    CV +C        E  N   I+   C  CG C   CP  A +       +
Sbjct: 581 DICVGC--RVCVGLCAYSAIEFDERRNVAVINEAMCKGCGSCAGYCPSGAAQIKHFNETQ 638

Query: 65  LWLKIN 70
           ++ +I+
Sbjct: 639 IFNEID 644



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I+PD C+ C VC   C   AI+ D  
Sbjct: 578 INPDICVGCRVCVGLCAYSAIEFDER 603


>gi|298244917|ref|ZP_06968723.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552398|gb|EFH86263.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 801

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDA 54
           +C+ C    CV+VCP       E  L  +    D CI CG C   CP  A
Sbjct: 692 DCVSCG--ACVQVCPTGSLMMAERHLTRYAFALDRCIFCGDCVEVCPHGA 739



 Score = 41.3 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 16/59 (27%)

Query: 9   CILCKHTDCVEVC-----PV---------DCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           CI C  T CV VC     P          D        +++H  +C+ CG C   CP  
Sbjct: 650 CINC--TQCVRVCHDVIGPDCYGMFGKGFDTIVSTPFNVSLHDTDCVSCGACVQVCPTG 706



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF 32
           + CI C    CVEVCP     E  NF
Sbjct: 723 DRCIFCGD--CVEVCPHGALGETPNF 746


>gi|298246751|ref|ZP_06970556.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549410|gb|EFH83276.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 801

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDA 54
           +C+ C    CV+VCP       E  L  +    D CI CG C   CP  A
Sbjct: 692 DCVSCG--ACVQVCPTGSLMMAERHLTRYAFALDRCIFCGDCVEVCPHGA 739



 Score = 41.3 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 16/59 (27%)

Query: 9   CILCKHTDCVEVC-----PV---------DCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           CI C  T CV VC     P          D        +++H  +C+ CG C   CP  
Sbjct: 650 CINC--TQCVRVCHDVIGPDCYGMFGKGFDTIVSTPFNVSLHDTDCVSCGACVQVCPTG 706



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF 32
           + CI C    CVEVCP     E  NF
Sbjct: 723 DRCIFCGD--CVEVCPHGALGETPNF 746


>gi|295100040|emb|CBK89129.1| Uncharacterized Fe-S center protein [Eubacterium cylindroides
           T2-87]
          Length = 376

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + +V  E C  CK   C+  C  +   F E    + I    C+ CG C   C  DAI  +
Sbjct: 189 LPHVDPEKCRGCKL--CLRECANNGLQFDEEAKKMTIDSKNCVGCGRCVGACNFDAISFN 246

Query: 59  TEPGLELWLKINSEYAT 75
            +   E+   +N   A 
Sbjct: 247 NDHANEI---LNCRMAE 260


>gi|227828749|ref|YP_002830529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|229585960|ref|YP_002844462.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|227460545|gb|ACP39231.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|228021010|gb|ACP56417.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 280

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           Y +  NC  C    C EVCPV   F   E+ +  +  +ECI    C   CP  
Sbjct: 95  YNIPINCFHCVSAPCTEVCPVGATFKRTEDGIVLVDYNECIGTKYCIYACPYG 147


>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 588

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIK 56
           V  E C  C+   C ++CPVD    GE      I    CI C  C  +CP++AI+
Sbjct: 537 VDPEKCSGCE--ICKQICPVDAIK-GEKSEVHNIDSKVCIKCKECIDKCPLEAIE 588



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
           + + P++C  C +C+  CPVDAIK +
Sbjct: 535 IEVDPEKCSGCEICKQICPVDAIKGE 560


>gi|149908810|ref|ZP_01897470.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
 gi|149808084|gb|EDM68025.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
          Length = 566

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T CV+ CP        + + I+P  C   G C   CP +AI        +
Sbjct: 196 TRCVDACPAGALSSNGHAIEINPFLCQGVGTCATACPTEAITYALPEPEK 245



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECP 51
           T++C LC    CV VCP    +   G   L     +C+ CG+CE  CP
Sbjct: 431 TDDCTLCMG--CVAVCPTRALHAVGGRPGLQFKEQDCVQCGLCEKACP 476


>gi|134045117|ref|YP_001096603.1| pyruvate ferredoxin oxidoreductase subunit delta [Methanococcus
          maripaludis C5]
 gi|132662742|gb|ABO34388.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanococcus
          maripaludis C5]
          Length = 85

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C+ C+  +C   CP  C  E +    I  D C  C +CE ECPV AIK + E 
Sbjct: 32 EKCVKCE--NCYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKTEREE 84


>gi|78485379|ref|YP_391304.1| electron transport complex, RnfABCDGE type, B subunit
           [Thiomicrospira crunogena XCL-2]
 gi|78363665|gb|ABB41630.1| NADH oxidoreductase, RnfABCDGE type, B subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 190

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C H  C++ CPVD        +  +   EC  C  C P CPVD I
Sbjct: 111 DICIGCVH--CIKACPVDAILGATKMMHTVIESECTGCEKCIPVCPVDCI 158



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D CI C  C   CPVDAI
Sbjct: 108 IDEDICIGCVHCIKACPVDAI 128


>gi|121998740|ref|YP_001003527.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121590145|gb|ABM62725.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 245

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV VCP    F   +  + +    CI C  C   CP  A     EP  E
Sbjct: 107 CQHCAEPPCVSVCPTRASFRRADGIVLVDKHRCIGCRYCMVACPFHARAFVDEPVAE 163


>gi|222824326|ref|YP_002575900.1| ferredoxin [Campylobacter lari RM2100]
 gi|222539547|gb|ACM64648.1| ferredoxin [Campylobacter lari RM2100]
          Length = 94

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV          EGE+   ++ D+C++C        C  
Sbjct: 1  MAVKITDICIACG--SCIDECPVGAIVDDANNPEGEDRYYVYADKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 36.3 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPD 58
                D CI CG C  ECPV AI  D
Sbjct: 1  MAVKITDICIACGSCIDECPVGAIVDD 27


>gi|332086808|gb|EGI91944.1| hydrogenase-4 component A [Shigella boydii 5216-82]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVQALTMGEQVVQANSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|330889653|gb|EGH22314.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str.
          301020]
          Length = 153

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C         +G    +F  I+   CI CG+CE  CP  AI+
Sbjct: 31 ERCVACNL--CAVACPVGCISLQKAETEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQ 88

Query: 57 PDTEPGLELW 66
             +  +  +
Sbjct: 89 LTPDFEMADF 98


>gi|331002311|ref|ZP_08325829.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330410127|gb|EGG89561.1| hypothetical protein HMPREF0491_00691 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 280

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CI C    CV  CP +        +  +P++CI C  C   C   A
Sbjct: 45 CINCMD--CVPGCPTNALKNNNGKVEFYPEKCIGCDNCINICKYGA 88


>gi|327480448|gb|AEA83758.1| ferredoxin [Pseudomonas stutzeri DSM 4166]
          Length = 470

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CI C  T CV+VCP        + L I   ECI C  C   C  DAI
Sbjct: 268 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC--DAI 306


>gi|300813869|ref|ZP_07094174.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512056|gb|EFK39251.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 310

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI CK   C + C +D    +  N      +ECI CGVC   CPV+AI+ 
Sbjct: 242 DKCIGCK--KCYKACKMDVDVCKDPNH-----NECIRCGVCINVCPVEAIEF 286


>gi|288819038|ref|YP_003433386.1| sulfur reductase subunit B [Hydrogenobacter thermophilus TK-6]
 gi|288788438|dbj|BAI70185.1| sulfur reductase subunit B [Hydrogenobacter thermophilus TK-6]
 gi|308752621|gb|ADO46104.1| sulfur reductase beta subunit [Hydrogenobacter thermophilus TK-6]
          Length = 232

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 1   MTYVVTE-----------NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCE 47
           MTY V E           +C+ C+   CV VCP    Y  E +  + ++ D+CI C +C 
Sbjct: 54  MTYEVGEFPNTQVFHLPKSCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCS 113

Query: 48  PECPVDAIKPDT 59
             CP    + D 
Sbjct: 114 WSCPYGCREFDE 125


>gi|326316383|ref|YP_004234055.1| cytochrome c oxidase accessory protein CcoG [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373219|gb|ADX45488.1| cytochrome c oxidase accessory protein CcoG [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 482

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI CG+C   C
Sbjct: 276 DCIDC--TLCVQVCPVGIDIRNGLQY-----ECIGCGLCVDAC 311



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 277 CIDCTLCVQVCPVG 290


>gi|221369206|ref|YP_002520302.1| Electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides KD131]
 gi|221162258|gb|ACM03229.1| Electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides KD131]
          Length = 188

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  ++C  C    C + CP D        +  +  D CI C  C   CP +AI    +
Sbjct: 106 AFIFEDHCTGC--MRCFKRCPTDAIIGANRQIHTVVTDACIGCNACIEACPTEAIVARVK 163

Query: 61  P 61
           P
Sbjct: 164 P 164


>gi|218283186|ref|ZP_03489264.1| hypothetical protein EUBIFOR_01852 [Eubacterium biforme DSM 3989]
 gi|218216064|gb|EEC89602.1| hypothetical protein EUBIFOR_01852 [Eubacterium biforme DSM 3989]
          Length = 304

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    C+E CP +     +  + I+  +C  C  C  ECP +A
Sbjct: 61  CINC--HHCIETCPKNAMKTIDKSIKINHSQCSGCEKCVYECPKNA 104


>gi|167045408|gb|ABZ10063.1| putative Possible metal-binding domain in RNase L inhibitor, RLI
          [uncultured marine crenarchaeote HF4000_APKG10F15]
          Length = 206

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 17 CVEVCPV-----DCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C++ CPV     DC    E  N   I  D C  CG+C   CP +AI
Sbjct: 22 CIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67


>gi|218960429|ref|YP_001740204.1| ferredoxin, 4Fe-4S [Candidatus Cloacamonas acidaminovorans]
 gi|167729086|emb|CAO79997.1| ferredoxin, 4Fe-4S [Candidatus Cloacamonas acidaminovorans]
          Length = 56

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C++VCPV       +        CIDCG C   CPV AI
Sbjct: 8  ETCIGCG--ACIDVCPVSALKLVNDKAECDESLCIDCGACIDTCPVQAI 54



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I  + CI CG C   CPV A+K
Sbjct: 5  IDKETCIGCGACIDVCPVSALK 26


>gi|167751017|ref|ZP_02423144.1| hypothetical protein EUBSIR_02002 [Eubacterium siraeum DSM 15702]
 gi|167655935|gb|EDS00065.1| hypothetical protein EUBSIR_02002 [Eubacterium siraeum DSM 15702]
          Length = 275

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V T  CI CK   C + CP       +N   I  D+C  CG C   CP
Sbjct: 210 VCTNGCIGCK--ICEKKCPHGAVIVADNHAVIDYDKCTSCGTCVSACP 255



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DC  VC  D     +    + P +C  CG C   CP   I 
Sbjct: 143 GYGDCAAVCGNDAITITDGVAVVDPAKCGGCGKCVTACPNHLIF 186


>gi|120610212|ref|YP_969890.1| 4Fe-4S ferredoxin [Acidovorax citrulli AAC00-1]
 gi|120588676|gb|ABM32116.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           citrulli AAC00-1]
          Length = 499

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI CG+C   C
Sbjct: 293 DCIDC--TLCVQVCPVGIDIRNGLQY-----ECIGCGLCVDAC 328



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 294 CIDCTLCVQVCPVG 307


>gi|24375408|ref|NP_719451.1| periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
          MR-1]
 gi|24350246|gb|AAN56895.1|AE015824_6 periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
          MR-1]
          Length = 410

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          C  C    C + CP          +  I  D+C+ CG C   CP  AI+ 
Sbjct: 22 CKGCD--ACKQFCPTHAINGASGAVHSIDEDKCLSCGQCLINCPFSAIEE 69



 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I+  +C  C  C+  CP  AI
Sbjct: 17 INASKCKGCDACKQFCPTHAI 37


>gi|189347872|ref|YP_001944401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189342019|gb|ACD91422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 188

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C++  CV  CP    +  E+    I+   C  C  C   CP DA
Sbjct: 58  SERCQHCENAPCVTYCPTRASHYAEDGTVQINRSLCTGCKACMAACPYDA 107


>gi|328883086|emb|CCA56325.1| putative hydrogenase [Streptomyces venezuelae ATCC 10712]
          Length = 199

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +    D   CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCANCVNACPFGVPKIDLQAKLQ 112


>gi|304436550|ref|ZP_07396520.1| anaerobic dimethyl sulfoxide reductase subunit B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304370420|gb|EFM24075.1| anaerobic dimethyl sulfoxide reductase subunit B [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 191

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPV 52
           V+  C  C    C++ CP   + + ++ + +H  D CI C +C   CP 
Sbjct: 58  VSLACNHCDAPSCMKACPTSAYSKRDDGIVMHDQDRCIGCKLCMMACPY 106


>gi|296162861|ref|ZP_06845642.1| formate dehydrogenase, beta subunit [Burkholderia sp. Ch1-1]
 gi|295886898|gb|EFG66735.1| formate dehydrogenase, beta subunit [Burkholderia sp. Ch1-1]
          Length = 310

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|266619056|ref|ZP_06111991.1| sigma-54 dependent transcriptional regulator [Clostridium
          hathewayi DSM 13479]
 gi|288869439|gb|EFD01738.1| sigma-54 dependent transcriptional regulator [Clostridium
          hathewayi DSM 13479]
          Length = 577

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV  C V      +    I PD+CI CG C   CP  A
Sbjct: 11 CKHC--YKCVRNCEVKAIMIKDERAEIMPDKCILCGKCMQVCPQSA 54


>gi|238753747|ref|ZP_04615108.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473]
 gi|238707983|gb|EEQ00340.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473]
          Length = 180

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  ++   CI CG+CE  CP  AI+
Sbjct: 58  ERCVACNL--CAVACPVGCISLQKAEHQDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQ 115

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 116 LTPDFEMGEF 125


>gi|237714697|ref|ZP_04545178.1| ferredoxin-type protein [Bacteroides sp. D1]
 gi|229445466|gb|EEO51257.1| ferredoxin-type protein [Bacteroides sp. D1]
          Length = 501

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 404 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 463

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 464 CPARPFRAIYIEGNPVQKE 482



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 378 DCTVCGD-----VCPNGAILPISVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 432

Query: 53  DAI 55
            A+
Sbjct: 433 QAV 435


>gi|226939171|ref|YP_002794242.1| Fdx1 [Laribacter hongkongensis HLHK9]
 gi|226714095|gb|ACO73233.1| Fdx1 [Laribacter hongkongensis HLHK9]
          Length = 83

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP     +GE    I  + C  C        C+  CPVD 
Sbjct: 1  MSLMITDECINCDV--CEPECPNGAISQGEEIYVIDANLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEYATQWPNITTK 83
          I  D            +E   ++  I+ K
Sbjct: 59 IPLDPAHPETE-----AELYQKFLIISGK 82


>gi|289583190|ref|YP_003481656.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
 gi|289532743|gb|ADD07094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
          Length = 552

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    C +VCP    +    + L +   D CI C  C+  CP        +   
Sbjct: 201 PCQHCTDAPCEKVCPTTARHTRDNDGLVLTDYDVCIGCRYCQVACPYGVNYFQWDEPD 258


>gi|224541976|ref|ZP_03682515.1| hypothetical protein CATMIT_01149 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525116|gb|EEF94221.1| hypothetical protein CATMIT_01149 [Catenibacterium mitsuokai DSM
           15897]
          Length = 235

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            + E+CI C    C + CP     E ++ +    ++C+ C  C   CPV+AI+ 
Sbjct: 173 TIDESCIHCGL--CAKECPEQAI-EIKDHVTFRKEQCMMCLRCLHHCPVNAIRF 223



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIK 56
           N L I  + CI CG+C  ECP  AI+
Sbjct: 170 NNLTID-ESCIHCGLCAKECPEQAIE 194


>gi|194366012|ref|YP_002028622.1| nitrate reductase subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194348816|gb|ACF51939.1| nitrate reductase, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 514

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSG 238


>gi|118443739|ref|YP_877665.1| ferredoxin [Clostridium novyi NT]
 gi|118134195|gb|ABK61239.1| polyferredoxin [Clostridium novyi NT]
          Length = 294

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C + CP +      N   I   +C++CG+C  +CP  AI+
Sbjct: 216 CIGCGL--CAKACPKEAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQ 261



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  CV  C  D     +    ++ D C+ CG C   CP + I+
Sbjct: 144 GYGSCVSACKFDAIEIVDGIAKVNKDNCVACGACVSTCPKNIIE 187



 Score = 40.1 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           V  +NC+ C    CV  CP +                    G +   I    CI CG+C 
Sbjct: 166 VNKDNCVACG--ACVSTCPKNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCA 223

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP +AI  +    +  + K
Sbjct: 224 KACPKEAITMENNLPVIDYSK 244


>gi|77465207|ref|YP_354710.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           2.4.1]
 gi|123757730|sp|Q3IXC5|RNFB_RHOS4 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|77389625|gb|ABA80809.1| Electron transport complex protein rnfB [Rhodobacter sphaeroides
           2.4.1]
          Length = 188

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  ++C  C    C + CP D        +  +  D CI C  C   CP +AI    +
Sbjct: 106 AFIFEDHCTGC--MRCFKRCPTDAIIGANRQIHTVVTDACIGCNACIEACPTEAIVARVK 163

Query: 61  P 61
           P
Sbjct: 164 P 164


>gi|120598968|ref|YP_963542.1| electron transport complex protein RnfB [Shewanella sp. W3-18-1]
 gi|120559061|gb|ABM24988.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. W3-18-1]
          Length = 199

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +   +C  C +C   CPVD I
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCI 159


>gi|304314037|ref|YP_003849184.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587496|gb|ADL57871.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 412

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  C      E CP     +G     +  D C  CGVC   CP  A + DT
Sbjct: 322 ERCADCLPCLAAERCPTHAIGDG-----LDTDRCFGCGVCAFSCPYGAYEMDT 369


>gi|301064617|ref|ZP_07205013.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
 gi|300441365|gb|EFK05734.1| electron transfer flavoprotein FAD-binding domain protein [delta
          proteobacterium NaphS2]
          Length = 393

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 1  MT-YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          MT ++  E C  CK   CV+ CP +     +    I  + C  CG C   C   AI  D 
Sbjct: 1  MTIWIDAELCNGCK--RCVKACPYEGVEMRDGKAHIL-ERCTSCGACIESCKQKAISSDA 57

Query: 60 EP 61
           P
Sbjct: 58 AP 59


>gi|320010259|gb|ADW05109.1| putative 4Fe-4S cluster-binding protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 200

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +    D   CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCANCVNACPFGVPKIDLQAKLQ 112


>gi|239626566|ref|ZP_04669597.1| dimethylsulfoxide reductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239516712|gb|EEQ56578.1| dimethylsulfoxide reductase [Clostridiales bacterium 1_7_47FAA]
          Length = 173

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    CV+ CP  C  +     F       CI C  C   CP  A + 
Sbjct: 60  ACMHCTDAPCVDACPAGCLGKDPETGFTVYDNTNCIGCKSCAMACPFGAPRY 111


>gi|126699848|ref|YP_001088745.1| anaerobic sulfite reductase subunit C [Clostridium difficile 630]
          Length = 326

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V       N +    D+CI CG C   CP +A
Sbjct: 175 DRCVNCG--ACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNA 223


>gi|42525777|ref|NP_970875.1| iron-sulfur cluster-binding protein [Treponema denticola ATCC
           35405]
 gi|41815788|gb|AAS10756.1| iron-sulfur cluster-binding protein [Treponema denticola ATCC
           35405]
          Length = 303

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           ++ ENC  CK   C+ VCP++ F   +  ++I +   CI CG C   C  +AI
Sbjct: 212 IIRENCSACK--KCISVCPINNFIFTDGRVSIKNQKNCILCGECFYNCGCNAI 262


>gi|33241163|ref|NP_876105.1| Fe-S cluster containing protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238693|gb|AAQ00758.1| Fe-S cluster containing protein [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 331

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            Y   + C       C +VCP +        L I  D C  CG C P CP++ I+    
Sbjct: 80  AYFNPKVCPKECSRPCEKVCPTNAINPT---LGIIQDLCYGCGRCIPACPLELIQEKDN 135


>gi|73668816|ref|YP_304831.1| formylmethanofuran dehydrogenase subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|1124960|emb|CAA63629.1| molybdenum formylmethanofuran dehydrogenase subunit fmdF
           [Methanosarcina barkeri]
 gi|72395978|gb|AAZ70251.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|1587237|prf||2206350E formylmethanofuran dehydrogenase
          Length = 346

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----EGENFLAIH--PDECIDCGVCEPECPVDAI 55
           + C  C    CVEVCP +  +      GE    I   PD CI CG C   CPVDAI
Sbjct: 179 DVCQTC--HTCVEVCPANAIFNKKAKPGERVEKITHRPDACIYCGACAVACPVDAI 232



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-------EGENFLA----IHPDECIDCGVCEPECPVD 53
           V E+C+ C    C ++CP  C         +G+  L     I  + C+ CG C   CPV+
Sbjct: 105 VNESCVHCGL--CEDICPQGCIEVTRDISADGKLKLVGKTNIDTECCVHCGWCAAVCPVN 162

Query: 54  AIKPDTE 60
           AI  +  
Sbjct: 163 AISVEKP 169



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TE C+ C    C  VCPV+        E   A   D C  C  C   CP +AI 
Sbjct: 146 TECCVHCGW--CAAVCPVNAISVEKPFEGHWARDEDVCQTCHTCVEVCPANAIF 197



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 7  ENCILCKHTDCVEVCP--------VDCFYEG---ENFLAIHPDE-CIDCGVCEPECPVDA 54
          E CI C    CV+ CP        V     G    +FL +   E C+ CG+C   CP  A
Sbjct: 23 EKCIGCG--TCVQACPKGNLAIGAVGAITRGLVDADFLEMKEREACLVCGICAKACPTGA 80

Query: 55 IKPDTE 60
          ++   E
Sbjct: 81 LEMKQE 86



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 22/69 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--------------------NFLAIHPDECIDCGVCE 47
            C+ C   +CV VCPV+   + E                        I  D C   G C 
Sbjct: 273 ACLGCG--NCVIVCPVNALSDCELAAGHLNNMDEKALLGVKNGRIKVIDQDRCGADGACA 330

Query: 48  PECPVDAIK 56
             CPVDAI+
Sbjct: 331 MICPVDAIR 339



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 34/78 (43%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---------------------------- 38
           + CI C    C   CPVD         AI PD                            
Sbjct: 215 DACIYCG--ACAVACPVDAI--DVRKTAILPDMEKKGVLEKKLLEKPAPETMLRTCLETD 270

Query: 39  --ECIDCGVCEPECPVDA 54
              C+ CG C   CPV+A
Sbjct: 271 EAACLGCGNCVIVCPVNA 288


>gi|331091232|ref|ZP_08340073.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404679|gb|EGG84218.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 263

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI CK   C +VC  D     +N   I P++C +CG C  +CP
Sbjct: 218 CIGCK--MCQKVCEYDAITVEDNIAHIDPEKCTNCGACAEKCP 258



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
               CV+ CP D  +       +  + C  CG C   CP + I+       +  ++ NS+
Sbjct: 146 GFGTCVKACPFDAIHIENGVAVVDKEACKACGKCIAVCPQNLIE-LVPYEQKHLVQCNSK 204



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 18/75 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGV 45
             V  E C  C    C+ VCP +                   +G++ ++     CI C +
Sbjct: 166 AVVDKEACKACG--KCIAVCPQNLIELVPYEQKHLVQCNSKDKGKDVMSACKAGCIGCKM 223

Query: 46  CEPECPVDAIKPDTE 60
           C+  C  DAI  +  
Sbjct: 224 CQKVCEYDAITVEDN 238


>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 625

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           +YV+  E C  C  T C   CPV       +   +I   +CI CG C   C   AI
Sbjct: 569 SYVIDPEKCKGC--TKCARNCPVGAITGNKKEPHSIDTSKCIKCGTCLENCVFGAI 622



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 7/43 (16%)

Query: 14  HTDCV-EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
              C   VC             I P++C  C  C   CPV AI
Sbjct: 556 DKKCAAHVCKAM------RSYVIDPEKCKGCTKCARNCPVGAI 592


>gi|254508907|ref|ZP_05121015.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16]
 gi|219548146|gb|EED25163.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16]
          Length = 553

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEINPYLCQGVGTCATACPTEAI 232

Query: 56  KPDTEPGLE 64
                   E
Sbjct: 233 HYALPNPQE 241



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C LC    CV VCP    +       L     +C+ CG+CE  CP +A+        + 
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGTSPSLQFVEQDCVQCGLCEKACPENALSLTPRMNWDS 476

Query: 66  WLKINS 71
             + N+
Sbjct: 477 QTRQNA 482



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHRIEIN 213


>gi|154150020|ref|YP_001403638.1| coenzyme F420 hydrogenase [Candidatus Methanoregula boonei 6A8]
 gi|153998572|gb|ABS54995.1| Coenzyme F420 hydrogenase [Methanoregula boonei 6A8]
          Length = 252

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           MT V+ +  C+ C    C   CPV+          +  D CI CG C  +CP
Sbjct: 179 MTSVINQGLCMGCG--SCAAACPVNAITMEYGKPQLERDLCIKCGACSAQCP 228



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            I+   C+ CG C   CPV+AI  +     
Sbjct: 182 VINQGLCMGCGSCAAACPVNAITMEYGKPQ 211


>gi|110637779|ref|YP_677986.1| NADH dehydrogenase I subunit I [Cytophaga hutchinsonii ATCC 33406]
 gi|123163631|sp|Q11VC0|NUOI_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110280460|gb|ABG58646.1| NADH dehydrogenase subunit I [Cytophaga hutchinsonii ATCC 33406]
          Length = 175

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 19/77 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +          +GE  L           I+   CI CG+CE  
Sbjct: 71  ENCTACGL--CAVSCPAEAITIIADERKKGEEHLYKEEKYASLYEINMLRCIFCGLCEEA 128

Query: 50  CPVDAIKPDTEPGLELW 66
           CP DA+    E     +
Sbjct: 129 CPKDAVYLTEELVPAQY 145


>gi|332883536|gb|EGK03819.1| NADH-quinone oxidoreductase subunit I [Dysgonomonas mossii DSM
           22836]
          Length = 177

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +           GE  L           I+   CI CG+CE  
Sbjct: 76  ERCTACGL--CALSCPAEAITMVAAERKKGEEHLYREEKYASEYEINMLRCIFCGICEEA 133

Query: 50  CPVDAIK 56
           CP +AI 
Sbjct: 134 CPKEAIF 140


>gi|315427795|dbj|BAJ49389.1| phenylacetyl-CoA:acceptor oxidoreductase subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 211

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            V  +C+ C    C+EVCP     +  + +  I  + C+ CG C   CP D
Sbjct: 53  FVPLSCMHCAKPPCLEVCPTTATRQRSDGIVVIDINLCMGCGYCIVACPYD 103


>gi|294643271|ref|ZP_06721097.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294806465|ref|ZP_06765306.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC
          1b]
 gi|292641394|gb|EFF59586.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446328|gb|EFG14954.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC
          1b]
          Length = 402

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C  + CV VC  +  +  E+ +      ++ D CIDCG+C+  CP +     +EP 
Sbjct: 10 ECTGC--SACVNVCGKNAIFYCEDKIGFRYPVVNLDLCIDCGLCQKVCPNNVEVDKSEPT 67

Query: 63 L 63
          L
Sbjct: 68 L 68


>gi|291515602|emb|CBK64812.1| Nitroreductase [Alistipes shahii WAL 8301]
          Length = 287

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 8  NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          +CI C    CV+VCP   F +   G +     P+ CI CG C   CP  ++     P   
Sbjct: 10 SCIRCG--RCVKVCPSQIFVQEKAGGDVTLHKPENCILCGHCVAACPTGSVNHAEFPAER 67


>gi|297570241|ref|YP_003691585.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926156|gb|ADH86966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 271

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA-------IK 56
           V   C  C +  CV  CP    F + +  + +    CI C  C   CP  A        +
Sbjct: 121 VLTLCNHCDNPPCVRACPTKATFKKADGIVGMDYHRCIGCRFCMAACPYGARSFNWRDPR 180

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKK 84
              E G     ++N +Y  +   +  K 
Sbjct: 181 GMDEHGRSFIRELNPDYPARTMGVVEKC 208


>gi|241667723|ref|ZP_04755301.1| NADH dehydrogenase subunit I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876267|ref|ZP_05248977.1| NADH-quinone oxidoreductase subunit I [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842288|gb|EET20702.1| NADH-quinone oxidoreductase subunit I [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEVVCPALAITINSTEREDGSRRTSSYEIDLFKCIFCGYCEESCPVDSI 117


>gi|257789941|ref|YP_003180547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257473838|gb|ACV54158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 188

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C++  CV  CP    +       ++++ D CI CG C   CP  A   + 
Sbjct: 67  CNHCENPACVNNCPSGAMHKDPATGIVSVNQDVCIACGYCSWVCPYGAPSMND 119


>gi|167622495|ref|YP_001672789.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352517|gb|ABZ75130.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 235

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVAD 164

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 165 NCDFCLNSKLA 175


>gi|146282199|ref|YP_001172352.1| ferredoxin [Pseudomonas stutzeri A1501]
 gi|145570404|gb|ABP79510.1| probable ferredoxin [Pseudomonas stutzeri A1501]
          Length = 470

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CI C  T CV+VCP        + L I   ECI C  C   C  DAI
Sbjct: 268 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC--DAI 306


>gi|91777583|ref|YP_552791.1| formate dehydrogenase beta subunit [Burkholderia xenovorans LB400]
 gi|91690243|gb|ABE33441.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia xenovorans LB400]
          Length = 310

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|126464669|ref|YP_001045782.1| electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|226735424|sp|A3PRP4|RNFB_RHOS1 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|126106480|gb|ABN79010.1| electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 188

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  ++C  C    C + CP D        +  +  D CI C  C   CP +AI    +
Sbjct: 106 AFIFEDHCTGC--MRCFKRCPTDAIIGANRQIHTVVTDACIGCNACIEACPTEAIVARVK 163

Query: 61  P 61
           P
Sbjct: 164 P 164


>gi|332879403|ref|ZP_08447100.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
          str. F0087]
 gi|332682823|gb|EGJ55723.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
          str. F0087]
          Length = 414

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 9  CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVD 53
          C  C    C+  C           EG     I+ D C+DCG+C   CP++
Sbjct: 10 CTGC--MACLNSCSHSAINIEFDDEGFERPHINQDLCVDCGLCVQVCPIN 57


>gi|332701478|ref|ZP_08421566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551627|gb|EGJ48671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 150

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    CV  CP   F       + +  + CI CG C   CPVDA+  D
Sbjct: 54  CLACDPAPCVLACPTGAFSQRRGGGVVVKRELCIQCGKCAEACPVDAVYLD 104



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E CI C    C E CPVD  Y        +P  CI CG C P CP   ++    P
Sbjct: 84  ELCIQCG--KCAEACPVDAVYLDAGG---NPFVCIHCGRCVPFCPHTCLEMQDAP 133


>gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 598

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C + CP +    + +    I   +CI CGVC  +CP  AI
Sbjct: 547 ELCKGCG--ICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  + C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKELCKGCGICAKNCPANAITGQIKKPFE 573


>gi|307297914|ref|ZP_07577718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916000|gb|EFN46383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 211

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C  VCPV      E+ + I   EC+ C  C+  CP  +IK 
Sbjct: 160 PCVSCG--ICQNVCPVSAIETEEDGMKIDTSECLVCLKCKESCPKISIKY 207



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 40  CIDCGVCEPECPVDAIKPDTE 60
           C+ CG+C+  CPV AI+ + +
Sbjct: 161 CVSCGICQNVCPVSAIETEED 181


>gi|262406391|ref|ZP_06082940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. 2_1_22]
 gi|262355094|gb|EEZ04185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Bacteroides sp. 2_1_22]
          Length = 401

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C  + CV VC  +  +  E+ +      ++ D CIDCG+C+  CP +     +EP 
Sbjct: 9  ECTGC--SACVNVCGKNAIFYCEDKIGFRYPVVNLDLCIDCGLCQKVCPNNVEVDKSEPT 66

Query: 63 L 63
          L
Sbjct: 67 L 67


>gi|255264062|ref|ZP_05343404.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62]
 gi|255106397|gb|EET49071.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 11/40 (27%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF---------LAIHPDE 39
           CI C    C E CPVD   EG NF         L    D+
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNFEFSTETREELYYDKDK 141


>gi|182625172|ref|ZP_02952948.1| aminotransferase, class V [Clostridium perfringens D str.
          JGS1721]
 gi|177909631|gb|EDT72065.1| aminotransferase, class V [Clostridium perfringens D str.
          JGS1721]
          Length = 272

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V T  CI C  T C++ C V      +    I  + C++CG C   CP +A+    
Sbjct: 1  MMNVDTSKCIGC--TLCMQDCIVSDIEMLDGKAHIKNESCMECGHCIAICPKEAVSDSD 57


>gi|197119509|ref|YP_002139936.1| hydrogenase 2 protein HybA [Geobacter bemidjiensis Bem]
 gi|197088869|gb|ACH40140.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase
           iron-sulfur cluster-binding subunit [Geobacter
           bemidjiensis Bem]
          Length = 309

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C+   CV VCPV    + +    +  + + CI C  C+  CP +  K   E  L  
Sbjct: 113 SCMHCQKPSCVSVCPVSAMTKEKVSGIVDYNKNTCIGCRYCQIACPYNIPKFQWEKALPQ 172


>gi|146292947|ref|YP_001183371.1| electron transport complex protein RnfB [Shewanella putrefaciens
           CN-32]
 gi|145564637|gb|ABP75572.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           putrefaciens CN-32]
 gi|319426524|gb|ADV54598.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           putrefaciens 200]
          Length = 199

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  +   +C  C +C   CPVD I
Sbjct: 107 AFIREDECIGC--TKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCI 159


>gi|57640071|ref|YP_182549.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
 gi|62296914|sp|O07835|IORA_PYRKO RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|57158395|dbj|BAD84325.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
          Length = 647

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +VV + C  CK   C+    CP   +        + P  C  CG C   CP DA +P  E
Sbjct: 588 HVVEDKCTGCK--ICINAYGCPAIYWDPETKKAKVDPTMCWGCGGCAQVCPFDAFEPMKE 645

Query: 61  PG 62
             
Sbjct: 646 GE 647


>gi|41017304|sp|Q49180|MVHB_METFE RecName: Full=Polyferredoxin protein mvhB
 gi|149806|gb|AAA72833.1| polyferredoxin (mvhB) [Methanothermus fervidus]
          Length = 412

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E CI C    CVE+CP        +     P+ C  CG+CE  CP DAI+ + + G
Sbjct: 214 EECIGCN--TCVEICPGGFIEPKSDLTVSLPEICPACGLCEKLCPTDAIELEVKLG 267



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +C+ C    CV  CPV+          + I  ++CI CG+C   CP +++    +   +
Sbjct: 145 DCVGCGL--CVPECPVNAITLPKYGESIEIDEEKCIKCGICAQTCPWNSVYISGKKPQK 201



 Score = 40.9 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 15/74 (20%)

Query: 9   CILCKHTDCVEVCPVDCF-YEG---ENFLAIHPDE------CIDCGVCEPECPVDAIKPD 58
           C+LC    CV VCP++    EG      + I  D+      C+ CG+C PECPV+AI   
Sbjct: 107 CVLC--QQCVNVCPIEVIGIEGVKEPARVEIKIDKPIYIVDCVGCGLCVPECPVNAI--- 161

Query: 59  TEPGLELWLKINSE 72
           T P     ++I+ E
Sbjct: 162 TLPKYGESIEIDEE 175



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++CI CG C+  CP  AI
Sbjct: 1  MIVINKEDCIRCGACQGVCPTGAI 24



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 12/66 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    C ++CP D               E  +  + + C  CG C   CP +AI+
Sbjct: 243 EICPACGL--CEKLCPTDAIELEVKLGPAKPVTEEGIVYNDENCKFCGRCALNCPNEAIR 300

Query: 57  PDTEPG 62
             +  G
Sbjct: 301 VVSPKG 306



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  +  E+CI C    C  VCP            I+ D C     C   CP DA++ + 
Sbjct: 1  MIVINKEDCIRCG--ACQGVCPTGAISVKPED-VIYCDMCGGEPKCVEACPNDALRHED 56



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C + CP +  Y                 +  +ECI C  C   CP   I+
Sbjct: 175 EKCIKCG--ICAQTCPWNSVYISGKKPQKSSRTIENFTLDKEECIGCNTCVEICPGGFIE 232

Query: 57  PDTE 60
           P ++
Sbjct: 233 PKSD 236


>gi|226942608|ref|YP_002797681.1| iron-sulfur cluster-binding protein CooF [Azotobacter vinelandii
           DJ]
 gi|226717535|gb|ACO76706.1| iron-sulfur cluster-binding protein CooF [Azotobacter vinelandii
           DJ]
          Length = 185

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y     C  C    CV  CP      +G + +    D+CI C +C   CP   +  D
Sbjct: 53  AYSYPSRCQHCSDAACVTACPTGAMQRDGCDAVFSDADKCIGCWMCVVVCPFGGVSAD 110


>gi|58259273|ref|XP_567049.1| hypothetical protein CNA07330 [Cryptococcus neoformans var.
          neoformans JEC21]
 gi|134107419|ref|XP_777594.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50260288|gb|EAL22947.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|57223186|gb|AAW41230.1| hypothetical protein CNA07330 [Cryptococcus neoformans var.
          neoformans JEC21]
          Length = 603

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +++++   CK   C + C   C               +    I  + CI CG+C  +CP 
Sbjct: 10 IISDD--KCKPKRCRQECKRSCPVVKMGKLCIEVNPNDKKAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIQ 71


>gi|319786799|ref|YP_004146274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Pseudoxanthomonas suwonensis 11-1]
 gi|317465311|gb|ADV27043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Pseudoxanthomonas suwonensis 11-1]
          Length = 93

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINELCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEPQCVVVCPVEC 58

Query: 55 IKPDTEPGLEL 65
          I PD E     
Sbjct: 59 IDPDPEHPESQ 69


>gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
          Length = 598

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C + CP +    + +    I   +CI CGVC  +CP  AI
Sbjct: 547 ELCKGCG--ICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  + C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKELCKGCGICAKNCPANAITGQIKKPFE 573


>gi|302336924|ref|YP_003802130.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301634109|gb|ADK79536.1| dihydroorotate dehydrogenase family protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 834

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CV VCP +        +++  + C +CG C   CP  A
Sbjct: 777 CINCL--RCVAVCPYNARTLDFPIMSVDRELCRNCGACVSVCPTGA 820


>gi|297526981|ref|YP_003669005.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Staphylothermus hellenicus DSM 12710]
 gi|297255897|gb|ADI32106.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Staphylothermus hellenicus DSM 12710]
          Length = 96

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C+ C    C   CP          + I+ D C  CG+C  ECPV+AI    EP
Sbjct: 44 CVKC--MLCWIFCPDMAIVWDGEKIVINYDYCKGCGICAHECPVNAITMVPEP 94


>gi|281601106|gb|ADA74090.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2002017]
 gi|332757739|gb|EGJ88068.1| hypothetical protein SF274771_2148 [Shigella flexneri 2747-71]
 gi|332758509|gb|EGJ88830.1| hypothetical protein SFK671_2125 [Shigella flexneri K-671]
 gi|332766874|gb|EGJ97074.1| 4Fe-4S ferredoxin-type protein [Shigella flexneri 2930-71]
 gi|333018063|gb|EGK37368.1| hypothetical protein SFK304_2329 [Shigella flexneri K-304]
          Length = 184

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP 
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPY 98


>gi|213582103|ref|ZP_03363929.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 165

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   CP        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 100


>gi|209548872|ref|YP_002280789.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226737409|sp|B5ZYM2|NUOI_RHILW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209534628|gb|ACI54563.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 42 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 84



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|134045160|ref|YP_001096646.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662785|gb|ABO34431.1| membrane-bound hydrogenase subunit ehaQ [Methanococcus maripaludis
           C5]
          Length = 161

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C++C    C + CP     E ++ ++   ++C+ CG CE  CP  AIK +
Sbjct: 112 QKCVMCLV--CSKNCPFGAISESDDKISFDMEKCVLCGHCEKICPAKAIKLE 161



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          E CILC    C+EVCPV       NF  I    D+C+ C  C   CPV+AI
Sbjct: 36 ETCILCN--RCLEVCPVTAIS--SNFSEIPNINDKCVYCNTCVETCPVNAI 82



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 20/74 (27%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE------------------NFLAIHPDECIDCGVC 46
           + + C+ C    CVE CPV+     +                    L  +  +C+ C VC
Sbjct: 63  INDKCVYCN--TCVETCPVNAINITKTRVKVENGKLIIENRLKSENLEYNRQKCVMCLVC 120

Query: 47  EPECPVDAIKPDTE 60
              CP  AI    +
Sbjct: 121 SKNCPFGAISESDD 134



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
           N + I+P+ CI C  C   CPV AI
Sbjct: 28 NNKIEINPETCILCNRCLEVCPVTAI 53


>gi|89092446|ref|ZP_01165400.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp.
          MED92]
 gi|89083534|gb|EAR62752.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp.
          MED92]
          Length = 82

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +    G+    I P +C +C        C   CPVD 
Sbjct: 1  MALIITDECINCDV--CEPECPNEAISPGDEIYEIEPSKCTECVGHYDTPQCVEVCPVDC 58

Query: 55 IKPDTEPGL 63
          I  D +   
Sbjct: 59 IPKDPDHEE 67


>gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
 gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
          Length = 410

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          C  C    C + CP          +  I  D+C+ CG C   CP  AI+ 
Sbjct: 22 CKGCD--ACKQFCPTHAINGASGAVHSIDEDKCLSCGQCLINCPFSAIEE 69



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I+  +C  C  C+  CP  AI
Sbjct: 17 INASKCKGCDACKQFCPTHAI 37


>gi|188495339|ref|ZP_03002609.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 53638]
 gi|188490538|gb|EDU65641.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 53638]
          Length = 187

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-- 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I   
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  --PDTEPGLEL 65
              +T    + 
Sbjct: 166 PVAETPDSWKW 176


>gi|219666358|ref|YP_002456793.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219536618|gb|ACL18357.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 189

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            +  + +C  C+H  C E CP    ++      ++++ + CI C  C   CP  A + + 
Sbjct: 60  AFFTSISCNHCEHPKCTEACPSGAMHKDPETGIVSVNQNRCIGCRYCTWACPYGAPQYNK 119

Query: 60  EPG 62
           E G
Sbjct: 120 EAG 122


>gi|325264015|ref|ZP_08130748.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
 gi|324031053|gb|EGB92335.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
          Length = 175

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
            +  CV+ CP D  +  E    +  ++C  CG C   CP   I+       + +++ NS 
Sbjct: 50  GYGTCVKACPFDAIHIVEGIAVVDKEKCKACGKCIAACPKHLIE-LIPYDQKTFVQCNSN 108



 Score = 41.7 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C + C  D          I   +C +CGVC  +CP   I P
Sbjct: 122 CIGC--RLCEKNCETDAITVTNFLAHIDASKCTNCGVCADKCPRKIIIP 168


>gi|320181301|gb|EFW56220.1| putative oxidoreductase, Fe-S subunit [Shigella boydii ATCC 9905]
          Length = 187

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|317050948|ref|YP_004112064.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurispirillum indicum S5]
 gi|316946032|gb|ADU65508.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurispirillum indicum S5]
          Length = 779

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 13/73 (17%)

Query: 6   TENCILCKHTD----CVEVCPVDCFYEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
            + C+ C +      C ++CP       EN      + ++  ++CI CG+C   CP    
Sbjct: 709 ADRCMSCGYCRDCHFCEDICPEQAIVRRENGDGTFEYCSLD-EKCIGCGICAGVCPCG-- 765

Query: 56  KPDTEPGLELWLK 68
               E  LE +L+
Sbjct: 766 IWVMEDNLEKYLE 778


>gi|253996965|ref|YP_003049029.1| NADH dehydrogenase subunit I [Methylotenera mobilis JLW8]
 gi|253983644|gb|ACT48502.1| NADH-quinone oxidoreductase, chain I [Methylotenera mobilis JLW8]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                       I   +CI CG+CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPAMAITIESEQREDDKTRRTTRYDIDLTKCIFCGMCEESCPVDSI 119



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + CI C +CE  CP  AI  ++E   + 
Sbjct: 62 ERCIACKLCEAVCPAMAITIESEQREDD 89


>gi|256830105|ref|YP_003158833.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579281|gb|ACU90417.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 251

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           T+     C+ C +  CV+ CP    Y+      + ++   CI CG C   CP  A
Sbjct: 53  THFQPGGCMHCDNPTCVQACPSGATYKDPQNGIVHVNEALCIGCGNCITACPYGA 107



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 15/63 (23%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-----------GVCEPECP 51
           +V    CI C   +C+  CP    +   +     PD+C  C             C   CP
Sbjct: 87  HVNEALCIGCG--NCITACPYGARFRHPDKRV--PDKCDFCFSSGRLERGLLPACVDTCP 142

Query: 52  VDA 54
             A
Sbjct: 143 TKA 145


>gi|212702517|ref|ZP_03310645.1| hypothetical protein DESPIG_00535 [Desulfovibrio piger ATCC 29098]
 gi|212673958|gb|EEB34441.1| hypothetical protein DESPIG_00535 [Desulfovibrio piger ATCC 29098]
          Length = 170

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C+  C  D    + EN + I  D C  CG C   CP      D
Sbjct: 58  CVHCARPACLRACEHDAMWLDEENIVHIDADRCTGCGACVTACPYHVPHLD 108


>gi|156936833|ref|YP_001434629.1| ATPase RIL [Ignicoccus hospitalis KIN4/I]
 gi|156565817|gb|ABU81222.1| ABC transporter related [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 11 LCKHTDCVEVCPVD------CFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C + +C+  CP++          GE+    IH   C  CG+C  +CP  AI  +  P  
Sbjct: 20 KCNY-ECIRFCPINKTGRNKAIELGEDGKPIIHELVCTGCGICIKKCPFQAIHIENLPEE 78


>gi|152990327|ref|YP_001356049.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
 gi|151422188|dbj|BAF69692.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
          Length = 354

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  +CP D     E  +AI+ D+CI+CG C   CP +A
Sbjct: 22 CEAICPADAIETKEAGVAIYQDKCIECGGCVGVCPTEA 59



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
            + E+C  C  + C  +CP +         AI   P  C+ C +C   C   +I+     
Sbjct: 243 TIDESCDNC--SICYRICPTEALSTTRKMDAILFDPLLCVRCHLCHDVCEKKSIQLAETF 300

Query: 62  GLELWLK 68
             + + +
Sbjct: 301 DTKEFFE 307


>gi|148643520|ref|YP_001274033.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552537|gb|ABQ87665.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
          Length = 412

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ENC+ C    C+E CPV      E    + I+ + CI CGVC   CP +A+ 
Sbjct: 142 ENCVGCG--TCIEECPVQAISLNELGEPIEINSEICIKCGVCSQTCPWNAVF 191



 Score = 42.4 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           +CI CK   CVE+CP D      N L I  P  C  CG+CE  C V+AI
Sbjct: 213 SCIGCK--TCVEICPGDFIKFNTNNLTITLPKMCAACGLCEKMCSVNAI 259



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M    T++CI C+   C  +CP +      N + IH D C D   C   CP DA+K D
Sbjct: 1  MIIFNTDDCIKCE--ACEGICPSNAIKVQPNNI-IHCDTCGDSPKCAEICPNDALKVD 55


>gi|118498233|ref|YP_899283.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           novicida U112]
 gi|156503296|ref|YP_001429361.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|194324417|ref|ZP_03058190.1| NADH-quinone oxidoreductase, chain i family [Francisella tularensis
           subsp. novicida FTE]
 gi|208780260|ref|ZP_03247602.1| NADH-quinone oxidoreductase, chain i family [Francisella novicida
           FTG]
 gi|254373574|ref|ZP_04989060.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375041|ref|ZP_04990521.1| NADH-quinone oxidoreductase subunit I [Francisella novicida
           GA99-3548]
 gi|290952997|ref|ZP_06557618.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313817|ref|ZP_06804390.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156633519|sp|A0Q8G4|NUOI_FRATN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918792|sp|A7NEK2|NUOI_FRATF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118424139|gb|ABK90529.1| NADH dehydrogenase I, I subunit [Francisella novicida U112]
 gi|151571298|gb|EDN36952.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
 gi|151572759|gb|EDN38413.1| NADH-quinone oxidoreductase subunit I [Francisella novicida
           GA99-3548]
 gi|156253899|gb|ABU62405.1| NADH-quinone oxidoreductase, chain I [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|194321482|gb|EDX18967.1| NADH-quinone oxidoreductase, chain i family [Francisella tularensis
           subsp. novicida FTE]
 gi|208743909|gb|EDZ90211.1| NADH-quinone oxidoreductase, chain i family [Francisella novicida
           FTG]
 gi|332184788|gb|AEE27042.1| NADH-ubiquinone oxidoreductase chain I [Francisella cf. novicida
           3523]
 gi|332678969|gb|AEE88098.1| NADH-ubiquinone oxidoreductase chain I [Francisella cf. novicida
           Fx1]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEVVCPALAITINSTEREDGTRRTSSYEIDLFKCIFCGYCEESCPVDSI 117


>gi|114045611|ref|YP_736161.1| formate dehydrogenase subunit beta [Shewanella sp. MR-7]
 gi|117918561|ref|YP_867753.1| formate dehydrogenase subunit beta [Shewanella sp. ANA-3]
 gi|113887053|gb|ABI41104.1| formate dehydrogenase beta subunit [Shewanella sp. MR-7]
 gi|117610893|gb|ABK46347.1| formate dehydrogenase beta subunit [Shewanella sp. ANA-3]
          Length = 304

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C++ C       +  N       D+CI CG C   CP D
Sbjct: 98  ACMHCADPACLKACSTSGAIVQHANGTVDFDSDKCIGCGYCASACPFD 145


>gi|89895077|ref|YP_518564.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219669489|ref|YP_002459924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89334525|dbj|BAE84120.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219539749|gb|ACL21488.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           ++  C  C+   C+  CP   +   EN +      +C+ C +C   CP  A + D
Sbjct: 53  ISMACNHCQDPQCLLNCPAGAYTRLENGIVYQDHAKCLGCRMCTYACPYGAPQYD 107


>gi|332830208|gb|EGK02836.1| hypothetical protein HMPREF9455_01086 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 16/64 (25%)

Query: 8   NCILCKHTDCVEVCPV--------DCFYEGE----NFLAIHPDECIDCGVCEPECPVDAI 55
           NCI C +  CV+VCP+        + F  G+       +I    CI+C  CE  CP +  
Sbjct: 353 NCISCGY--CVDVCPMHLMPMKFEENFRRGKYFNLEKYSI--SSCIECAACEYICPSNVP 408

Query: 56  KPDT 59
             ++
Sbjct: 409 LIES 412


>gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 617

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  C    C+  CPV     E +   AI    CI CG C   C  +A+  D
Sbjct: 569 CTGCG--ACLRACPVAAISGEKKQPHAIDQQLCIQCGSCRQACKFEAVLVD 617



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 19  EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             CP            I P  C  CG C   CPV AI  + +   
Sbjct: 549 HKCPAGA-CRALIRFDIDPARCTGCGACLRACPVAAISGEKKQPH 592


>gi|307310801|ref|ZP_07590447.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli W]
 gi|306908979|gb|EFN39475.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli W]
 gi|315060935|gb|ADT75262.1| electron transport complex protein RnfCB [Escherichia coli W]
 gi|323378494|gb|ADX50762.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli KO11]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAIHTVMSDLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|296452095|ref|ZP_06893806.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296877451|ref|ZP_06901484.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
 gi|296259045|gb|EFH05929.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296431463|gb|EFH17277.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
          Length = 260

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 11 VDKELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPQKAI 60



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 11 VDKELCIGCGLCKNDCPVNNIIIENKKS 38


>gi|283787085|ref|YP_003366950.1| anaerobic dimethyl sulfoxide reductase chain A [Citrobacter
           rodentium ICC168]
 gi|282950539|emb|CBG90205.1| anaerobic dimethyl sulfoxide reductase chain A [Citrobacter
           rodentium ICC168]
          Length = 208

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +Y ++  C  C    CV  CP    +  E +  + +    C+ C  CE  CP  A + D
Sbjct: 59  SYYLSIACNHCDEPVCVSGCPTGAMHKREEDGLVLVDDSVCVGCRYCEMRCPYGAPQFD 117


>gi|221114662|ref|XP_002155312.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, partial [Hydra magnipapillata]
          Length = 175

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 74  ERCIACKL--CEAICPAQAITIEAEPRPDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 130



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + EP
Sbjct: 74 ERCIACKLCEAICPAQAITIEAEP 97



 Score = 37.4 bits (86), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 115 CIYCGF--CQEACPVDAIVEGPNFEY 138


>gi|241679736|ref|XP_002400836.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative
           [Ixodes scapularis]
 gi|215504281|gb|EEC13775.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative
           [Ixodes scapularis]
          Length = 210

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNFEY 173



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + E   +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEERAD 135


>gi|188589554|ref|YP_001922167.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499835|gb|ACD52971.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 321

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C+ C    CV  C    VD        +  + ++CI CG C   CP  A
Sbjct: 170 ERCVSCG--ACVRACKKKSVDALKAVNYKVVRNEEKCIGCGECVINCPTGA 218



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 8/38 (21%)

Query: 21  CPVDCFYEGENFLAI--------HPDECIDCGVCEPEC 50
           CP DC     +   I        + + C+ CG C   C
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYNKERCVSCGACVRAC 182


>gi|187933514|ref|YP_001887097.1| anaerobic sulfite reductase subunit C [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721667|gb|ACD22888.1| anaerobic sulfite reductase subunit C [Clostridium botulinum B str.
           Eklund 17B]
          Length = 285

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V + C+ C    CV+ C        +  +  + D C+DCG C   C + A
Sbjct: 162 FVLDKCVGCGL--CVKACRQKALEVVDKKIVYNKDLCVDCGGCVRACKLGA 210


>gi|146282512|ref|YP_001172665.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
 gi|145570717|gb|ABP79823.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
          Length = 312

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +NC+ C    C++ CP      +  N +   + + CI CG C   CP +
Sbjct: 101 DNCMHCADPGCLKACPSPGAIVQYANGIVDFNSEHCIGCGYCVAGCPFN 149


>gi|78043951|ref|YP_358993.1| indolepyruvate ferredoxin oxidoreductase subunit IorA
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996066|gb|ABB14965.1| indolepyruvate ferredoxin oxidoreductase, IorA subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 581

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V++E C  C    C+++ CP       +   +I P  C  CGVC   C   AI
Sbjct: 525 VISEKCTGC--QRCLKLGCPAIAIK--DKKASIDPLLCNGCGVCAQVCKFSAI 573


>gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 598

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C + CP +    + +    I   +CI CGVC  +CP  AI
Sbjct: 547 ELCKGCG--ICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  + C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKELCKGCGICAKNCPANAITGQIKKPFE 573


>gi|310829205|ref|YP_003961562.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
 gi|308740939|gb|ADO38599.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
          Length = 133

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           V  + C+ C    C   C V      EN+L   HP++C++C +C   CPV AI 
Sbjct: 79  VDKDRCVDCG--ACTAACVVGALDMDENWLLTYHPEKCLECALCIKACPVRAIH 130



 Score = 37.1 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +  D C+DCG C   C V A+  D  
Sbjct: 77  IEVDKDRCVDCGACTAACVVGALDMDEN 104


>gi|291556935|emb|CBL34052.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           siraeum V10Sc8a]
          Length = 275

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V T  CI CK   C + CP       +N   I  D+C  CG C   CP
Sbjct: 210 VCTNGCIGCK--ICEKKCPHGAVIVADNHAVIDYDKCTSCGTCVSACP 255



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DC  VC  D     +    + P +C  CG C   CP   I 
Sbjct: 143 GYGDCAAVCSNDAITITDGVAVVDPAKCGGCGKCVTACPNHLIF 186


>gi|289208952|ref|YP_003461018.1| electron transporter subunit B [Thioalkalivibrio sp. K90mix]
 gi|288944583|gb|ADC72282.1| electron transport complex, RnfABCDGE type, B subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 194

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ EN CI C  T C++ CPVD        +  +  +EC  C +C   CPVD I+
Sbjct: 106 VIDENICIGC--TLCIQACPVDAILGAAKQMHTVIEEECTGCELCIEPCPVDCIE 158


>gi|163843083|ref|YP_001627487.1| NADH dehydrogenase subunit I [Brucella suis ATCC 23445]
 gi|189030925|sp|B0CLD7|NUOI_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|163673806|gb|ABY37917.1| NADH-quinone oxidoreductase, chain I [Brucella suis ATCC 23445]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|152970517|ref|YP_001335626.1| electron transport complex protein RnfB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238895008|ref|YP_002919742.1| electron transport complex protein RnfB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044608|ref|ZP_06017663.1| electron transport complex [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330015741|ref|ZP_08308242.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           sp. MS 92-3]
 gi|150955366|gb|ABR77396.1| electron transport complex protein RnfB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238547324|dbj|BAH63675.1| electron transport complex protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259038009|gb|EEW39225.1| electron transport complex [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328530799|gb|EGF57656.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           sp. MS 92-3]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           M  V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CP   I
Sbjct: 108 MLAVIDEPNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVAPCPTQCI 162



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 18  VEVCPVDCFY---EGENFL-AIHPDECIDCGVCEPECPVDAI 55
           V+  PVD      E    L  I    CI C  C   CPVDAI
Sbjct: 91  VDPQPVDGDAQEAEPARMLAVIDEPNCIGCTKCIQACPVDAI 132


>gi|89893987|ref|YP_517474.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89333435|dbj|BAE83030.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           +  C  C    CV+ CP    +  E+    H  ++CI C  C   CP  A +   E G
Sbjct: 55  SSACNHCAEAKCVKGCPTGAMHYAEDGTVQHDKNKCIGCKYCIWNCPYGAPQFLEESG 112


>gi|45359028|ref|NP_988585.1| hypothetical protein MMP1465 [Methanococcus maripaludis S2]
 gi|45047903|emb|CAF31021.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 252

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C E+CPV      +  + +    CI CG CE  CPV AI
Sbjct: 199 DTCINC--MVCSEICPVGAIVYEDGLMKLDDKMCIFCGKCEKNCPVTAI 245



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          YV +  CI C+   C E+CPVD   E   ++   I P++C+ C +C   CPV AI
Sbjct: 42 YVESNKCIRCEL--CYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAI 94



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 9   CILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C  T C +VCP               EN ++++ D CI+C VC   CPV AI  + 
Sbjct: 164 CMGC--TACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYED 220



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E+CI C    C   CP      E  N + I+ + C+ C  CE  CP  AIK + E G 
Sbjct: 132 ESCIKCG--ICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGE 187



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 28/78 (35%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLA------------------IHPDEC 40
           E C+ C+   C + CPV            E +N +                   +  + C
Sbjct: 77  EKCVKCE--ICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESC 134

Query: 41  IDCGVCEPECPVDAIKPD 58
           I CG+CE  CP  AI  +
Sbjct: 135 IKCGICERFCPTSAITVE 152



 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 24 DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          D     E  L +  ++CI C +C   CPVDAIK  +
Sbjct: 32 DLIVPVERNLYVESNKCIRCELCYEMCPVDAIKEPS 67


>gi|15922548|ref|NP_378217.1| NADH dehydrogenase subunit I [Sulfolobus tokodaii str. 7]
 gi|15623338|dbj|BAB67326.1| 169aa long hypothetical NADH-plastoquinone oxidoreductase subunit 9
           [Sulfolobus tokodaii str. 7]
          Length = 169

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D        G+ F +I+   C+ CG C   CPVDA+K 
Sbjct: 63  DICIGC--TLCALICPADAMKMVTEGGKKFPSINYGRCVFCGFCVDVCPVDALKE 115



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + ++ D CI C +C   CP DA+K  TE G + +  IN
Sbjct: 57 MIRLYKDICIGCTLCALICPADAMKMVTEGG-KKFPSIN 94


>gi|145219606|ref|YP_001130315.1| ferredoxin [Prosthecochloris vibrioformis DSM 265]
 gi|145205770|gb|ABP36813.1| Fe-S cluster domain protein [Chlorobium phaeovibrioides DSM 265]
          Length = 277

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             C+  C  +        + I  D C  CG C P CP   +    +    +++  N
Sbjct: 147 GSCIAWCDFNAMRIENGLIVIDKDLCTGCGACVPACPTGVLVMQQKKAERIFIACN 202



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP--VDAIKPDTE 60
           C  C    CV+VCP +          I  ++C  CG C   CP  V+ I  + +
Sbjct: 218 CTAC--QKCVKVCPEEAIVIENFVARIIQEKCTACGKCLEVCPSKVNCIVFEKD 269


>gi|103486787|ref|YP_616348.1| NADH dehydrogenase subunit I [Sphingopyxis alaskensis RB2256]
 gi|123379893|sp|Q1GTK7|NUOI_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|98976864|gb|ABF53015.1| NADH-quinone oxidoreductase, chain I [Sphingopyxis alaskensis
           RB2256]
          Length = 162

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 117


>gi|332999463|gb|EGK19048.1| formate hydrogenlyase subunit 6 [Shigella flexneri VA-6]
          Length = 180

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLKIN 70
             L +W K N
Sbjct: 96  YELAVWKKEN 105



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|302388965|ref|YP_003824786.1| Fe-S-cluster [Thermosediminibacter oceani DSM 16646]
 gi|302199593|gb|ADL07163.1| Fe-S-cluster [Thermosediminibacter oceani DSM 16646]
          Length = 154

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CI C    C+  CP+         + + + PD C  CG+C   CP   ++ D E G+
Sbjct: 52  CIQCGL--CINACPIGALKRDRISDAVVVDPDLCAGCGICVRVCPYGVLRIDDETGM 106


>gi|254975823|ref|ZP_05272295.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-66c26]
 gi|255093209|ref|ZP_05322687.1| anaerobic sulfite reductase subunit C [Clostridium difficile CIP
           107932]
 gi|255307248|ref|ZP_05351419.1| anaerobic sulfite reductase subunit C [Clostridium difficile ATCC
           43255]
 gi|255314952|ref|ZP_05356535.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-76w55]
 gi|255517626|ref|ZP_05385302.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-97b34]
 gi|255650737|ref|ZP_05397639.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-37x79]
 gi|260683823|ref|YP_003215108.1| anaerobic sulfite reductase subunit C [Clostridium difficile CD196]
 gi|260687483|ref|YP_003218617.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           R20291]
 gi|260209986|emb|CBA64002.1| anaerobic sulfite reductase subunit C [Clostridium difficile CD196]
 gi|260213500|emb|CBE05210.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           R20291]
 gi|328887691|emb|CAJ69116.2| Anaerobic sulfite reductase subunit C [Clostridium difficile]
          Length = 323

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V       N +    D+CI CG C   CP +A
Sbjct: 172 DRCVNCG--ACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNA 220


>gi|239624842|ref|ZP_04667873.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521228|gb|EEQ61094.1| anaerobic dimethyl sulfoxide reductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 215

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKP 57
           M Y +  +C  C    CV+ CP    Y+ + +  +  +E   CI CG C+  CP +A + 
Sbjct: 78  MRYNMNISCNHCSKPACVDACPTGRIYKEDTYGIVLANEEIPCISCGRCQKACPWEAPQF 137


>gi|254460189|ref|ZP_05073605.1| NADH-ubiquinone oxidoreductase (complex i) subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206676778|gb|EDZ41265.1| NADH-ubiquinone oxidoreductase (complex i) subunit
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRDD 89



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|169347288|ref|ZP_02866226.1| hypothetical protein CLOSPI_00003 [Clostridium spiroforme DSM 1552]
 gi|169293905|gb|EDS76038.1| hypothetical protein CLOSPI_00003 [Clostridium spiroforme DSM 1552]
          Length = 1172

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 31/76 (40%)

Query: 5   VTENCILCKHTDCVEVCP---VDCF-YEGENF-------------------------LAI 35
           + ENCI C   +CV VCP   V  F  +GE                           + +
Sbjct: 686 IKENCIQCN--NCVMVCPHATVRAFLIDGEEMADLPEDISDDVLKPIGKNVDGLVYRIQV 743

Query: 36  HPDECIDCGVCEPECP 51
            PD C+ CG+C  ECP
Sbjct: 744 SPDNCVGCGLCVTECP 759


>gi|319943295|ref|ZP_08017578.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC
           51599]
 gi|319743837|gb|EFV96241.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C+  CPVD       F   +  D C  C +C P CP D I     P    W 
Sbjct: 93  CIGC--TKCILACPVDAIVGAPRFQHQVLTDRCTGCELCLPPCPTDCIS--LVPLASPWQ 148

Query: 68  KINSEYATQW 77
             ++    Q 
Sbjct: 149 ASDARLGRQH 158



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I P  CI C  C   CPVDAI
Sbjct: 88  IDPLHCIGCTKCILACPVDAI 108


>gi|255021904|ref|ZP_05293914.1| Respiratory nitrate reductase beta chain [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968728|gb|EET26280.1| Respiratory nitrate reductase beta chain [Acidithiobacillus caldus
           ATCC 51756]
          Length = 517

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D C    +C   CP   +  + E G
Sbjct: 183 CNHCLNPACVAACPSGAIYKRGEDGIVLIDQDRCRGWRMCISACPYKKVYFNWESG 238


>gi|212224721|ref|YP_002307957.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F)
          [Thermococcus onnurineus NA1]
 gi|212009678|gb|ACJ17060.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F)
          [Thermococcus onnurineus NA1]
          Length = 165

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 8/54 (14%)

Query: 9  CILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CV  CP D       +  G   + +    CI C  CE  CP  AIK
Sbjct: 29 CIGCG--ACVNACPPDALLRIDDYNRGVREIVLDVGRCIRCARCEEVCPTGAIK 80



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 35 IHPDECIDCGVCEPECPVDA 54
          I    CI CG C   CP DA
Sbjct: 24 IDATLCIGCGACVNACPPDA 43


>gi|126698285|ref|YP_001087182.1| putative reductase [Clostridium difficile 630]
 gi|115249722|emb|CAJ67539.1| putative nitroreductase [Clostridium difficile]
          Length = 273

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGCG--MCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 IEYNRETFELEP 75



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++C+ CG+CE +C V+AI
Sbjct: 1  MIDINLEKCVGCGMCESDCLVNAI 24


>gi|119719130|ref|YP_919625.1| putative ATPase RIL [Thermofilum pendens Hrk 5]
 gi|119524250|gb|ABL77622.1| ABC transporter related [Thermofilum pendens Hrk 5]
          Length = 601

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 9  CILCK-HTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C   K + +CV+ CP++          E EN   I  + C+ CG+C  +CP  AI
Sbjct: 11 CRPSKCNQECVKFCPINRSGSKCVWIDEVENKARISEELCVGCGICVKKCPFSAI 65


>gi|15679708|ref|NP_276826.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622846|gb|AAB86186.1| formate hydrogenlyase, iron-sulfur subunit 2 [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 160

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C+ C  +   C  +CPV    E +  L +  + CI C +C   CP   I  +TE
Sbjct: 46 CLQCHPEKAPCARICPVGAIREVDGALVVDEESCILCKLCMVACPAGMIVMNTE 99


>gi|23501697|ref|NP_697824.1| NADH dehydrogenase subunit I [Brucella suis 1330]
 gi|161618774|ref|YP_001592661.1| NADH dehydrogenase subunit I [Brucella canis ATCC 23365]
 gi|254704125|ref|ZP_05165953.1| NADH dehydrogenase subunit I [Brucella suis bv. 3 str. 686]
 gi|260566626|ref|ZP_05837096.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40]
 gi|261754791|ref|ZP_05998500.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str.
           686]
 gi|81752799|sp|Q8G1A9|NUOI_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030924|sp|A9MAI7|NUOI_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|23347620|gb|AAN29739.1| NADH dehydrogenase I, I subunit [Brucella suis 1330]
 gi|161335585|gb|ABX61890.1| NADH-quinone oxidoreductase, chain I [Brucella canis ATCC 23365]
 gi|260156144|gb|EEW91224.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40]
 gi|261744544|gb|EEY32470.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str.
           686]
          Length = 163

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|268595645|ref|ZP_06129812.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 35/02]
 gi|268549034|gb|EEZ44452.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 35/02]
          Length = 164

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 63  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 119



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 63 ERCIACKLCEAVCPAMAINIESEERED 89


>gi|255657073|ref|ZP_05402482.1| putative nitroreductase [Clostridium difficile QCD-23m63]
          Length = 258

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E CI C    C   CPV+          I   +C+ CG C   CP  AI
Sbjct: 9  VDKELCIGCGL--CKNDCPVNNIIIENKKSVIKKQDCLMCGHCAAICPQKAI 58



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +  + CI CG+C+ +CPV+ I  + +  
Sbjct: 9  VDKELCIGCGLCKNDCPVNNIIIENKKS 36


>gi|254283963|ref|ZP_04958931.1| iron-sulfur cluster-binding protein [gamma proteobacterium NOR51-B]
 gi|219680166|gb|EED36515.1| iron-sulfur cluster-binding protein [gamma proteobacterium NOR51-B]
          Length = 332

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 15/63 (23%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECI-------DCGVCEP 48
           T+ V + C  C    C   CP D  +       G     +  D+CI        CG C  
Sbjct: 247 TFGVDDVCYGC--RACENACPPDAIFQEKKTVRGTEKWYVDFDKCIPFFAESYGCGACIA 304

Query: 49  ECP 51
            CP
Sbjct: 305 VCP 307



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           D C  C  CE  CP DAI  + +
Sbjct: 252 DVCYGCRACENACPPDAIFQEKK 274


>gi|188576263|ref|YP_001913192.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520715|gb|ACD58660.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 94

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +   C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINALCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 58

Query: 55 IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  K+   P
Sbjct: 59 IDPDPAIPETHDQLLAKLMQLQRDHPELYEKEPPAP 94


>gi|146307631|ref|YP_001188096.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pseudomonas mendocina ymp]
 gi|145575832|gb|ABP85364.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pseudomonas
           mendocina ymp]
          Length = 470

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV VCP        + L I   ECI C  C   C
Sbjct: 268 DCIDCK--MCVHVCPTGIDIR--DGLQI---ECIGCAACIDAC 303


>gi|194336481|ref|YP_002018275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308958|gb|ACF43658.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 62

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M + + + CILC    C   CPV+    G++   I    C+DC        C   CP D+
Sbjct: 1  MAHKIIDTCILCG--ACEPECPVNAISVGDDMYIIDEALCVDCVGHHDAPACVAICPTDS 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|159110100|ref|XP_001705312.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia lamblia ATCC 50803]
 gi|157433394|gb|EDO77638.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia lamblia ATCC 50803]
          Length = 278

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV+ CP  C     E    +    + CI CG C   C   AI
Sbjct: 7  VDEDLCIGCNV--CVQGCPTQCIEVNAETRKLVFRAKETCISCGHCASVCRTAAI 59



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           F  +  D CI C VC   CP   I+ + E    ++  
Sbjct: 3  RFPEVDEDLCIGCNVCVQGCPTQCIEVNAETRKLVFRA 40


>gi|313679593|ref|YP_004057332.1| NADH dehydrogenase subunit i [Oceanithermus profundus DSM 14977]
 gi|313152308|gb|ADR36159.1| NADH dehydrogenase subunit I [Oceanithermus profundus DSM 14977]
          Length = 176

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 18/77 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 51  EKCIGC--SLCAAACPAYAIYVEPDENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELWL 67
           P  AI    E  L  ++
Sbjct: 109 PTGAIVLGNEFELADYV 125


>gi|310825903|ref|YP_003958260.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium limosum
           KIST612]
 gi|308737637|gb|ADO35297.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium limosum
           KIST612]
          Length = 100

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            E C+ C    C  VCP     +  + L I  D C  CGVC   C V+AI    E   
Sbjct: 45  AEKCVNCL--RCFLVCPDGTIDKSGDILEIDYDYCKGCGVCAKACKVEAITMIKEADA 100


>gi|268325665|emb|CBH39253.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [uncultured archaeon]
          Length = 729

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C EVCP       E      ++   C  CG C   CP  A         +
Sbjct: 624 EICIGCG--TCAEVCPYGALELDEVMQVMTVNEAVCKGCGGCNSVCPSGAATMKHYRDRQ 681

Query: 65  LWLKINSEYAT-----QWPNITTKKESLPSAA 91
           ++ +I +         +  ++    E+   AA
Sbjct: 682 VYAQIEALLERGLQIVELESVVEAVEAPAGAA 713



 Score = 40.9 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDT 59
           I+ + CI CG C   CP  A++ D 
Sbjct: 621 INEEICIGCGTCAEVCPYGALELDE 645



 Score = 37.8 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            I  D+C DC  C   CPV  I  +   GL     I
Sbjct: 266 YIDMDKCKDCTPCIEACPVKDIPDEFNEGLSTRSAI 301


>gi|253682712|ref|ZP_04863509.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|253562424|gb|EES91876.1| ferredoxin [Clostridium botulinum D str. 1873]
          Length = 288

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C + CP +      N   I   +C++CG+C  +CP  AI+
Sbjct: 216 CIGCGL--CAKACPKEAITMENNLPVIDYSKCVNCGLCAMKCPTKAIQ 261



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            +  CV  C  D     +    ++ D+C+ CG C   CP   I         +++  N
Sbjct: 144 GYGSCVSACKFDAIEIVDGIAKVNKDKCVACGACVSTCPKGVI-DLVPQKQLVFVSCN 200



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           V  + C+ C    CV  CP                      G +   I    CI CG+C 
Sbjct: 166 VNKDKCVACG--ACVSTCPKGVIDLVPQKQLVFVSCNSHDRGLDVKNICSTGCIGCGLCA 223

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP +AI  +    +  + K
Sbjct: 224 KACPKEAITMENNLPVIDYSK 244


>gi|222055574|ref|YP_002537936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
 gi|221564863|gb|ACM20835.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
          sp. FRC-32]
          Length = 95

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           CI C    C+EVCP   F   +    +   D C++CG C+  CP DAI+ D
Sbjct: 19 ACIGCG--RCLEVCPHQVFTLADKRARMADRDTCMECGACQRNCPADAIRVD 68


>gi|315186755|gb|EFU20513.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
          thermophila DSM 6578]
          Length = 706

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
          C+ C    C+ VCPV    +G    + + P+ CI CG C   C   A  +  D E  LE
Sbjct: 15 CVSC--HRCIAVCPVKYANDGSGEVVEVRPELCIGCGECLKACTHGARRVVDDLEEALE 71


>gi|237843379|ref|XP_002370987.1| ABC transporter, putative [Toxoplasma gondii ME49]
 gi|211968651|gb|EEB03847.1| ABC transporter, putative [Toxoplasma gondii ME49]
 gi|221481811|gb|EEE20181.1| ABC transporter, putative [Toxoplasma gondii GT1]
 gi|221502311|gb|EEE28044.1| ABC transporter, putative [Toxoplasma gondii VEG]
          Length = 613

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 11/55 (20%)

Query: 12 CKHTDCVEVCPVDCFYEGENFLAIHPDE-----------CIDCGVCEPECPVDAI 55
          CK   C + C  +C       L I  D            CI CG+C  +CP +AI
Sbjct: 27 CKPKKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVKKCPFEAI 81


>gi|156934160|ref|YP_001438076.1| electron transport complex protein RnfB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166225083|sp|A7MMM3|RNFB_ENTS8 RecName: Full=Electron transport complex protein rnfB
 gi|156532414|gb|ABU77240.1| hypothetical protein ESA_01987 [Cronobacter sakazakii ATCC BAA-894]
          Length = 192

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDEPNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCIE 163


>gi|126465959|ref|YP_001041068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Staphylothermus marinus F1]
 gi|126014782|gb|ABN70160.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Staphylothermus marinus F1]
          Length = 175

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 9  CILCKHTDCVEVCPVDCFYEG--ENFLAIHP--DECIDCGVCEPECPVDAI 55
          CI C    CV VCP +       EN + I+     CI CG C   CPV AI
Sbjct: 48 CIACG--ACVNVCPPNALTLSKQENIIMINYFIGRCIFCGRCAEVCPVGAI 96



 Score = 40.1 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 32 FLAIHPDECIDCGVCEPECPVDA 54
           ++I P +CI CG C   CP +A
Sbjct: 40 KISIDPSKCIACGACVNVCPPNA 62


>gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 620

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           M Y++  E C  C    C++ CP D     ++ +  I  + C+ CG C   C  DA+
Sbjct: 553 MHYLIEAEKCDGC--MACLKTCPADAIEGSKDEVHVIDQESCLKCGSCLDTCKRDAV 607



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIK 56
              I  ++C  C  C   CP DAI+
Sbjct: 554 HYLIEAEKCDGCMACLKTCPADAIE 578


>gi|291530236|emb|CBK95821.1| Iron only hydrogenase large subunit, C-terminal domain
          [Eubacterium siraeum 70/3]
          Length = 560

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      +    I  DECI CG+C   CP +A
Sbjct: 10 NCKNC--YKCIRHCPVKSIRFSDGQANIVEDECILCGMCFVACPQNA 54


>gi|255101373|ref|ZP_05330350.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-63q42]
          Length = 323

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V       N +    D+CI CG C   CP +A
Sbjct: 172 DRCVNCG--ACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNA 220


>gi|222837010|gb|EEE75403.1| predicted protein [Populus trichocarpa]
          Length = 484

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV+VCPV               ECI CG+C   C
Sbjct: 277 DCIDCK--MCVQVCPVGIDIRNGLQY-----ECIGCGLCIDAC 312



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 278 CIDCKMCVQVCPVG 291


>gi|187929661|ref|YP_001900148.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187726551|gb|ACD27716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
          Length = 719

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C    CV+VC          +G   + + P+ C+ CG C   CP  AI     
Sbjct: 334 VGCN--ACVDVCSASAIASQWKDGRGSVHVTPNLCVGCGACTTACPTGAITYAYP 386



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV  CP     +      LA+    C+ CG+CE  CP  AI
Sbjct: 586 VNRERCTLC--MACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAI 637



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           + C  C    C++VCP       +    I  D C D   C   C
Sbjct: 209 DRCTRCN--ACIDVCPEGAI---DALYQIDLDACRDHRACVKAC 247



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 206 IDLDRCTRCNACIDVCPEGAI 226


>gi|160942352|ref|ZP_02089660.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434716|gb|EDP12483.1| hypothetical protein CLOBOL_07237 [Clostridium bolteae ATCC
           BAA-613]
          Length = 305

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++C+ C    C+  C        EN   I+ + C  CG C   CP  A
Sbjct: 59  DDCLHCG--RCITACKRGAISP-ENKTWINRELCSGCGECVNACPAGA 103



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 21 CPVDC-FYEGENFLAIHP------DECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
          CP+ C +       +I P      D+C+ CG C   C   AI P+     + W  IN E 
Sbjct: 35 CPLSCQWCSNPESQSIKPVIMYKEDDCLHCGRCITACKRGAISPEN----KTW--INREL 88


>gi|150402674|ref|YP_001329968.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanococcus maripaludis C7]
 gi|150033704|gb|ABR65817.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanococcus maripaludis C7]
          Length = 85

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+ C+  +C   CP  C  E +    I  D C  C +CE ECPV AIK + E 
Sbjct: 32 DKCVKCE--NCYIFCPEGCIQEKDGKFEIDYDYCKGCLICEKECPVKAIKTEREE 84


>gi|160898220|ref|YP_001563802.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
 gi|160363804|gb|ABX35417.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
          Length = 484

 Score = 49.8 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV+VCPV               ECI CG+C   C
Sbjct: 277 DCIDCK--MCVQVCPVGIDIRNGLQY-----ECIGCGLCIDAC 312



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 278 CIDCKMCVQVCPVG 291


>gi|283787038|ref|YP_003366903.1| polyferredoxin [Citrobacter rodentium ICC168]
 gi|282950492|emb|CBG90157.1| putative polyferredoxin [Citrobacter rodentium ICC168]
          Length = 285

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C + CPV       N   +  + CI CG C   CPVDA++
Sbjct: 25 ACRQACPVGAISFTANAATLDSERCIRCGHCAFACPVDALE 65



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 9/62 (14%)

Query: 1   MTYVV-------TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           M +V          NC+LC    C  VC        E  L      C  C  C   CP  
Sbjct: 175 MPHVQEHAVLLDAVNCVLCG--ACERVCQQQVIKIDELALRTDAARCTGCNNCAVVCPTK 232

Query: 54  AI 55
           AI
Sbjct: 233 AI 234


>gi|262372375|ref|ZP_06065654.1| ferredoxin [Acinetobacter junii SH205]
 gi|262312400|gb|EEY93485.1| ferredoxin [Acinetobacter junii SH205]
          Length = 82

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T  CI C    C+  CP +  YEG     I  + C +C        C   CP+D 
Sbjct: 1  MALMITTACINCD--MCLPECPNEAIYEGAKIYEIDTERCTECVGFYDAPTCIAVCPIDC 58

Query: 55 IKPDTEPGLEL 65
          +KPD +     
Sbjct: 59 VKPDPQLNESH 69


>gi|239905922|ref|YP_002952661.1| HMC operon ORF 2 protein [Desulfovibrio magneticus RS-1]
 gi|239795786|dbj|BAH74775.1| HMC operon ORF 2 protein [Desulfovibrio magneticus RS-1]
          Length = 350

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C   C V  F + E    +  PD C+ C  C   CP +    + +   
Sbjct: 108 CNHCMEPACASACFVAAFKKSETGAVVYDPDVCVGCRYCMVACPFNIPAYEYDKAF 163


>gi|237795239|ref|YP_002862791.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Ba4 str. 657]
 gi|229260949|gb|ACQ51982.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Ba4 str. 657]
          Length = 574

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|224373323|ref|YP_002607695.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nautilia profundicola AmH]
 gi|223590011|gb|ACM93747.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nautilia profundicola AmH]
          Length = 551

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C LC    CV VC       +  +N L      C DCG CE  CP   I    +    
Sbjct: 420 DKCTLCMG--CVSVCNAGALTAHPEDNSLKFDAGVCTDCGYCEIACPEKCINVIYDS--- 474

Query: 65  LWLKINSEYATQWPNITTKKESL 87
             L++N EY  Q    T  K+  
Sbjct: 475 --LELNPEYFGQ---KTMAKDEP 492



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E C      +CV+VCP +     + E  L     +C  CG C   CP  A+     P
Sbjct: 202 VLKETC-----GNCVDVCPTNAILKIDEEKKLLFSHIDCDGCGGCVSVCPSGALDFSAVP 256

Query: 62  GLELWLKINSEYATQWPNI 80
             E + +I   +    P I
Sbjct: 257 R-ETFYEIAKFFKGHIPLI 274


>gi|167627161|ref|YP_001677661.1| NADH dehydrogenase subunit I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189030929|sp|B0TWQ2|NUOI_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|167597162|gb|ABZ87160.1| NADH dehydrogenase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 162

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEVVCPALAITINSTEREDGSRRTSSYEIDLFKCIFCGYCEESCPVDSI 117


>gi|94986722|ref|YP_594655.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, gamma subunit [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730971|emb|CAJ54334.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, gamma subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 1187

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 35/114 (30%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE----------GENFLA-----------------IHP 37
           + +NCI C    C  VCP  C                                    ++P
Sbjct: 688 IADNCIQC--FQCSYVCPHACIRPVLATEEELIGAPETFVTKDAIGKELKGLKMRIQVYP 745

Query: 38  DECIDCGVCEPECPV---DAIKPDTEPGLELWLKINSEYATQWPNITTKKESLP 88
           ++C+ CG C   CP      I    E   +  + IN ++A +   I+ K   +P
Sbjct: 746 EDCVGCGSCADVCPSKPKSLIMMPLETQRQEQV-INLDFAQKH--ISLKDNLMP 796


>gi|21227667|ref|NP_633589.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina
           mazei Go1]
 gi|20906059|gb|AAM31261.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina
           mazei Go1]
          Length = 346

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIH--PDECIDCGVCEPECPVDAI 55
           C  C    C++VCP +  +      GE    I   PD CI CG C   CPVDAI
Sbjct: 181 CQTC--HTCIDVCPANAIFNKKAKSGERVEKITHRPDACIYCGACAVACPVDAI 232



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T++ TE C+ C    C  VCPV+        E   +   + C  C  C   CP +AI 
Sbjct: 142 THIDTECCVHCGW--CAAVCPVNAISVEKPFEGRWSRDENVCQTCHTCIDVCPANAIF 197



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-----------FLAIHPDECIDCGVCEPECPVD 53
           V E+C+ C    C ++C   C                    I  + C+ CG C   CPV+
Sbjct: 105 VNESCVHCGL--CEDICSQGCIEVTREISTDGKLKVIGKTHIDTECCVHCGWCAAVCPVN 162

Query: 54  AIKPDTE 60
           AI  +  
Sbjct: 163 AISVEKP 169



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 30/76 (39%)

Query: 7   ENCILCKHTDCVEVCPVDCF------------YEGE----------------NFLAIHPD 38
           + CI C    C   CPVD               +G                   L    D
Sbjct: 215 DACIYCG--ACAVACPVDAIDVRKTAILPEMEKKGPLEKKLIEVPAPEDALRTQLETDDD 272

Query: 39  ECIDCGVCEPECPVDA 54
            C+ CG C   CPV+A
Sbjct: 273 ACLGCGNCVIVCPVNA 288



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 14/62 (22%)

Query: 7  ENCILCKHTDCVEVCP--------VDCFYEG---ENFLAIHPDE-CIDCGVCEPECPVDA 54
          E CI C    CV+ CP        V     G    +FL +   E C+ CG+C   CP  A
Sbjct: 23 EKCIGCG--TCVQACPKGTLSIGAVGAVARGLLDADFLEMAKSEDCLVCGICAKVCPTGA 80

Query: 55 IK 56
          ++
Sbjct: 81 LE 82



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 30 ENFLAIHPDECIDCGVCEPECP 51
          +  L   P++CI CG C   CP
Sbjct: 15 DRQLVYQPEKCIGCGTCVQACP 36



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 22/70 (31%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--------------------NFLAIHPDECIDCGVC 46
           + C+ C   +CV VCPV+ F   E                        ++ + C   G C
Sbjct: 272 DACLGCG--NCVIVCPVNAFDNRELAAGYLYDMDEKAILGVKNGKISVVNQERCGGDGTC 329

Query: 47  EPECPVDAIK 56
              CPVDAI+
Sbjct: 330 ALICPVDAIR 339


>gi|145220489|ref|YP_001131198.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206653|gb|ABP37696.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 199

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C+ C++T C+  CP    Y  E+ +  ++ D CI C  C   CP DA
Sbjct: 60  CMHCENTPCLTACPTGATYMTEDGIVKVNYDRCIGCYACCIACPYDA 106


>gi|323345060|ref|ZP_08085284.1| F420H2:quinone oxidoreductase [Prevotella oralis ATCC 33269]
 gi|323094330|gb|EFZ36907.1| F420H2:quinone oxidoreductase [Prevotella oralis ATCC 33269]
          Length = 402

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 6  TENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          T  C  C    C +VCP +C       +G     I  ++C+ C  CE  CPV
Sbjct: 10 THKCAGCL--ACGDVCPTECISFPLMGDGHFHPHIDKNKCVQCLSCERVCPV 59


>gi|311281329|ref|YP_003943560.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
 gi|308750524|gb|ADO50276.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
          Length = 301

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C  VCP  C    +    I  D C  CG C   CP  A+K
Sbjct: 56  CVGC--QRCAAVCPQGCHRFAQGKHEIDFDACRACGRCVEVCPEQALK 101


>gi|304390449|ref|ZP_07372402.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326205|gb|EFL93450.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 557

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C   +C  VCP +   +          D C  CG+C  ECP  AI
Sbjct: 504 NCFGCD--NCFGVCPDNAITKIRPTQYVFKYDYCKGCGICSEECPCGAI 550


>gi|298252164|ref|ZP_06975967.1| cyclic nucleotide-binding protein [Ktedonobacter racemifer DSM
           44963]
 gi|297546756|gb|EFH80624.1| cyclic nucleotide-binding protein [Ktedonobacter racemifer DSM
           44963]
          Length = 649

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V   C  C+   C+ +C         +      + CI CG+C   CP D I
Sbjct: 488 VATACRHCQDPVCL-LCSRAGIARLPSGEVYITESCIGCGICAERCPYDNI 537



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 16/61 (26%)

Query: 7  ENCILCKHTDCVEVCPV----DCFYEGENFLAIHPD----------ECIDCGVCEPECPV 52
          + CI C    C+  CP+           N   I  +          EC+ CG C P CPV
Sbjct: 31 DMCIGCD--RCMRACPLPLSSQVNIADLNLATISDEVAPHVARFTQECVMCGSCVPVCPV 88

Query: 53 D 53
          +
Sbjct: 89 N 89



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 28  EGENFLAIHPDECIDCGVCEPEC 50
           EG   L I  D+C+ C  CE  C
Sbjct: 445 EGTEVLVIDLDKCVHCDKCEEAC 467


>gi|256810025|ref|YP_003127394.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793225|gb|ACV23894.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 20/85 (23%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-------------IHPDECIDCGVCEPEC 50
           V+ E CI C+   C  VCP                         I+P+ CI C  C   C
Sbjct: 61  VIEELCIGCEG--CANVCPTKAIEMIPTEPVKITENYVKDKIPKINPERCIYCLYCHDFC 118

Query: 51  PVDAIKPDTEPGL-----ELWLKIN 70
           PV ++  +  P       E +++++
Sbjct: 119 PVFSVFNEISPIHSRDVGEDYIEVD 143


>gi|289811295|ref|ZP_06541924.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 171

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 108 MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCIE 163


>gi|239624249|ref|ZP_04667280.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239520635|gb|EEQ60501.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 175

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
           +  C+ C+   C+  CPV C Y+             CI C  C   CP  A + 
Sbjct: 58  STACMHCQDAPCIMACPVGCLYKSNKTGMTVYDNTNCIGCRSCGMACPFGAPRY 111


>gi|269863740|ref|XP_002651328.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220064726|gb|EED42727.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 245

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 4  VVTENCI--LCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  E C    C   +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 16 VNEELCKPDKC-AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|242281233|ref|YP_002993362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124127|gb|ACS81823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 367

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C+  C        ++   I   +C  CG C   C   AI  D +  +E++
Sbjct: 192 EKCTGCGV--CITECAAKALDLDDDGKIIMGGKCTGCGRCFLSCRYGAISIDWKSDVEVF 249

Query: 67  LKINSEY 73
            K   EY
Sbjct: 250 TKRLIEY 256



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            +HP++C  CGVC  EC   A+  D +
Sbjct: 188 HLHPEKCTGCGVCITECAAKALDLDDD 214


>gi|213417927|ref|ZP_03351018.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 194

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 130 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 185



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 126 EISPQECRMCGACWRSCPENVIQFDDD 152


>gi|219850884|ref|YP_002465316.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
 gi|219545143|gb|ACL15593.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
          Length = 301

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C   C  +        + +  + C+ CG+C   CP + IK D     
Sbjct: 166 CTGCG--TCAHHCKEEAIRISGGKVVLDQERCMLCGMCVSPCPFEIIKADPPEYQ 218


>gi|212637351|ref|YP_002313876.1| formate-dependent nitrite reductase subunit NrfC [Shewanella
           piezotolerans WP3]
 gi|212558835|gb|ACJ31289.1| Formate-dependent nitrite reductase, nrfC protein [Shewanella
           piezotolerans WP3]
          Length = 238

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 108 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIGACPYDARFINKETDVAD 167

Query: 64  ELWLKINSEYAT 75
                +N++ + 
Sbjct: 168 NCDFCLNTKLSK 179


>gi|164686674|ref|ZP_02210702.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
          16795]
 gi|164604064|gb|EDQ97529.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
          16795]
          Length = 455

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPEC 50
          + C  C   +CV+VCPV       +    I  D+C+ CG C   C
Sbjct: 8  DLCTGC--QECVKVCPVSAITGEPHKPQEIDADKCVICGQCVQVC 50



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 12/30 (40%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          I  D C  C  C   CPV AI  +     E
Sbjct: 5  IDKDLCTGCQECVKVCPVSAITGEPHKPQE 34


>gi|15897266|ref|NP_341871.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus P2]
 gi|13813471|gb|AAK40661.1| NADH dehydrogenase subunit I (NuoI) [Sulfolobus solfataricus P2]
          Length = 188

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K 
Sbjct: 81  DVCIGC--TLCALICPADAMKMVTESGKKFPQINYGRCVFCGFCVDVCPVDALKE 133



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            + ++ D CI C +C   CP DA+K  TE G + + +IN
Sbjct: 75  MIRLYKDVCIGCTLCALICPADAMKMVTESG-KKFPQIN 112


>gi|33151622|ref|NP_872975.1| electron transport complex protein RnfB [Haemophilus ducreyi
           35000HP]
 gi|71153696|sp|Q7VNT5|RNFB_HAEDU RecName: Full=Electron transport complex protein rnfB
 gi|33147843|gb|AAP95364.1| putative ferredoxin II, iron sulfur protein [Haemophilus ducreyi
           35000HP]
          Length = 207

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + CI C  T C++ CPVD        +  +  D C  C +C   CP + I+
Sbjct: 114 DMCIGC--TKCIQACPVDAIIGTNKAMHTVVADLCTGCELCVAPCPTNCIE 162



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           IH D CI C  C   CPVDAI
Sbjct: 111 IHEDMCIGCTKCIQACPVDAI 131


>gi|294637339|ref|ZP_06715635.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda
           ATCC 23685]
 gi|291089496|gb|EFE22057.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda
           ATCC 23685]
          Length = 964

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 40/110 (36%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------------------------EGENFLAIHPDE 39
           E CI C   +C  VCP                                E    L ++P++
Sbjct: 694 ELCIQCG--NCAFVCPHAAIRAKFYHQDRLTGAPDDFRSAPISARGFPETRYTLQVYPED 751

Query: 40  CIDCGVCEPECPVDAIKP-DTEPG-----LELWLKINSE-----YATQWP 78
           C  CG+C   CPV   +P  TEP       E    +N+E     +  Q P
Sbjct: 752 CTGCGLCVEACPVRHSEPGQTEPQRAISMQEKLPHLNAEKRALDWFEQLP 801



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 37  PDECIDCGVCEPECPVDAIK 56
           P+ CI CG C   CP  AI+
Sbjct: 693 PELCIQCGNCAFVCPHAAIR 712


>gi|291279180|ref|YP_003496015.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Deferribacter desulfuricans SSM1]
 gi|290753882|dbj|BAI80259.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Deferribacter desulfuricans SSM1]
          Length = 578

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V TE C  CK   C  + CP   + + E    I    C  CG+C   C  DAI  
Sbjct: 521 FVDTEKCTGCK--ACTRIGCPAILWDDNEKQAFIDETLCTGCGLCPRVCRFDAIHQ 574


>gi|241763110|ref|ZP_04761170.1| cytochrome c oxidase accessory protein CcoG [Acidovorax delafieldii
           2AN]
 gi|241367735|gb|EER61989.1| cytochrome c oxidase accessory protein CcoG [Acidovorax delafieldii
           2AN]
          Length = 482

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI CG+C   C
Sbjct: 275 DCIDC--TLCVQVCPVGIDIRKGLQY-----ECIGCGLCVDAC 310



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 276 CIDCTLCVQVCPVG 289


>gi|298345847|ref|YP_003718534.1| glutamate synthase (NADPH) small subunit [Mobiluncus curtisii ATCC
           43063]
 gi|298235908|gb|ADI67040.1| glutamate synthase (NADPH) small subunit [Mobiluncus curtisii ATCC
           43063]
          Length = 557

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C   +C  VCP +   +          D C  CG+C  ECP  AI
Sbjct: 504 NCFGCD--NCFGVCPDNAITKIRPTQYVFKYDYCKGCGICSEECPCGAI 550


>gi|222053342|ref|YP_002535704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
            FRC-32]
 gi|221562631|gb|ACM18603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
            FRC-32]
          Length = 1031

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 8    NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            NC+ C    C+  C  D         G+     +P  C   G+C  +CP  AI       
Sbjct: 960  NCVAC--AACITACKYDAIELVDTPFGKEATV-NPALCKGDGLCNTKCPTGAIYLKHYTN 1016

Query: 63   LELWLKINSE 72
             E+W +I++ 
Sbjct: 1017 QEIWSQIDAA 1026



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 28/92 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----GENFL-------------AIHPDECI--- 41
           YVV E C  C    CVE CP            +N                + P+ C+   
Sbjct: 116 YVVEEKCTGCNL--CVEYCPAKVPDRYNQNISDNKAIHIHFSQALPLIPYVDPEACLYLK 173

Query: 42  --DCGVCEPECPVDAIKPDTEPGLELWLKINS 71
              C +C   C  +AI        E  +++N+
Sbjct: 174 DGSCTICVGVCKPNAI---DLHQEEELMEVNA 202


>gi|167562064|ref|ZP_02354980.1| ferredoxin [Burkholderia oklahomensis EO147]
          Length = 155

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 80  AFIDEQLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132


>gi|160931195|ref|ZP_02078598.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753]
 gi|156869807|gb|EDO63179.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753]
          Length = 865

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  CK       CP+      +  + I    C  CG C  +CP  A++   + G  ++
Sbjct: 720 EKCRGCKVCQVENTCPIKVAKVRDGKVVIDDSICNHCGRCVGKCPFKAVEA-HQDGYRVY 778

Query: 67  L 67
           +
Sbjct: 779 I 779


>gi|148643396|ref|YP_001273909.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
 gi|148552413|gb|ABQ87541.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
          Length = 662

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY---EGENFL---------------AIHPDECIDCG 44
           YV+ E+C  C    CVE CP++      EG   +                I  D CI+C 
Sbjct: 248 YVIEEDCTGCG--SCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKDYCIECM 305

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C+  C   AI  + +P  
Sbjct: 306 LCDQACERGAIDHNQQPSE 324



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V+   C       CVE+CP        +       I+   C  CG C   CP  A+    
Sbjct: 589 VICGAC-----EVCVELCPYGAISITGDDNAAHAEINAALCKGCGTCVGACPSGAMDQQH 643

Query: 60  EPGLELWLKINSEY 73
               ++  +I++  
Sbjct: 644 FKTDQIMAQISAAL 657


>gi|189500041|ref|YP_001959511.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chlorobium phaeobacteroides BS1]
 gi|189495482|gb|ACE04030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          phaeobacteroides BS1]
          Length = 62

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + + + C  C    C   CPV     G++   I  D C+DC        C   CPVD 
Sbjct: 1  MAHRINDECTYC--AACEPECPVSAITAGDDIYIIDEDACVDCEGYFDEAACVVVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|46200990|ref|ZP_00055996.2| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Magnetospirillum magnetotacticum MS-1]
          Length = 247

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y  E +  + +  D+CI C  C   CP  A + D
Sbjct: 76  SCLHCEEPPCVPVCPTGASYKREEDGIVLVDYDKCIGCKYCSWSCPYGAREFD 128


>gi|315657652|ref|ZP_07910534.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492124|gb|EFU81733.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 557

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C   +C  VCP +   +          D C  CG+C  ECP  AI
Sbjct: 504 NCFGCD--NCFGVCPDNAITKIRPTQYVFKYDYCKGCGICSEECPCGAI 550


>gi|260891188|ref|ZP_05902451.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           hofstadii F0254]
 gi|260859215|gb|EEX73715.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           hofstadii F0254]
          Length = 464

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVD-CFYEGENFLAIHPDE---------CIDCGVCEPECP 51
           NCI C +  CVE CP++   +E  ++      E         CI+CG CE  CP
Sbjct: 390 NCISCGY--CVEACPMNLMPFEFADYYEKGKYEKMVKANIQNCIECGACEFVCP 441


>gi|242237745|ref|YP_002985926.1| hypothetical protein Dd703_0287 [Dickeya dadantii Ech703]
 gi|242129802|gb|ACS84104.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 209

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T+ C  CK   C++ CP++       +  +++    CI C  C   CP
Sbjct: 121 TDTCRQCKDPQCMKACPLNVISYNPEYGCISVDTKRCIGCAACTSSCP 168


>gi|296121588|ref|YP_003629366.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
 gi|296013928|gb|ADG67167.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 176

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-----------NFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C   CPVDC Y  +           +  AI   +C+ C +C   CPVD I  
Sbjct: 63  CIGCD--KCAVACPVDCIYINKSRVPGSKGFQVDGFAIDYTKCMFCALCVDPCPVDCIFM 120

Query: 58  DTEPGLELW 66
            +   L  +
Sbjct: 121 GSNHDLSCY 129



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 9/18 (50%)

Query: 39 ECIDCGVCEPECPVDAIK 56
           CI C  C   CPVD I 
Sbjct: 62 TCIGCDKCAVACPVDCIY 79


>gi|167761318|ref|ZP_02433445.1| hypothetical protein CLOSCI_03723 [Clostridium scindens ATCC
          35704]
 gi|167660984|gb|EDS05114.1| hypothetical protein CLOSCI_03723 [Clostridium scindens ATCC
          35704]
          Length = 263

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C++ CP       E     + D C+ CG C   CP +A+
Sbjct: 7  ERCIGCG--ACIKDCPASAIRMTEEKAEAYKD-CLLCGHCVAICPSEAV 52



 Score = 41.7 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + I  + CI CG C  +CP  AI+  TE   E +
Sbjct: 1  MIRIEKERCIGCGACIKDCPASAIRM-TEEKAEAY 34


>gi|145508706|ref|XP_001440297.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145535448|ref|XP_001453457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407514|emb|CAK72900.1| unnamed protein product [Paramecium tetraurelia]
 gi|124421179|emb|CAK86060.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 134 ERCIACKL--CQSACPARAITIETEPRPDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 190



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 115 PLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 157



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG N+  
Sbjct: 175 CIYCGF--CQEACPVDAIVEGPNYEY 198


>gi|116625966|ref|YP_828122.1| hydrogenase 2 protein HybA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229128|gb|ABJ87837.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 317

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
            V + C+ C    CV+ CP+    +G++ +   + ++CI C  C+  CP +  K +
Sbjct: 114 FVKQQCMHCVDPSCVQACPLSALTKGDHGIVAWNGNQCIGCRCCQLSCPFNIPKFE 169


>gi|315654422|ref|ZP_07907330.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           ATCC 51333]
 gi|315491457|gb|EFU81074.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           ATCC 51333]
          Length = 557

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C   +C  VCP +   +          D C  CG+C  ECP  AI
Sbjct: 504 NCFGCD--NCFGVCPDNAITKIRPTQYVFKYDYCKGCGICSEECPCGAI 550


>gi|253579343|ref|ZP_04856613.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849441|gb|EES77401.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 289

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++CI C    CV+ C  +     +  + +   +C  CG C   CPVDA
Sbjct: 165 DDCISCGV--CVKACRQEALKMVDGKIELDAQKCNHCGRCVKSCPVDA 210


>gi|238920560|ref|YP_002934075.1| NADH dehydrogenase subunit I [Edwardsiella ictaluri 93-146]
 gi|269139723|ref|YP_003296424.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Edwardsiella tarda EIB202]
 gi|294637172|ref|ZP_06715480.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC
           23685]
 gi|259514773|sp|C5B8H9|NUOI_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|238870129|gb|ACR69840.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267985384|gb|ACY85213.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Edwardsiella tarda EIB202]
 gi|291089636|gb|EFE22197.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC
           23685]
 gi|304559590|gb|ADM42254.1| NADH-ubiquinone oxidoreductase chain I [Edwardsiella tarda FL6-60]
          Length = 180

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  A+
Sbjct: 57  AERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGMCEEACPTTAL 114

Query: 56  KPDTEPGLELW 66
           +   +  +  +
Sbjct: 115 QLTPDFEMGEF 125


>gi|256826661|ref|YP_003150620.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256582804|gb|ACU93938.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 252

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C    CV+ CPV             +   +CI CG+C   CP +
Sbjct: 146 SCKQCAEAQCVKNCPVHAIGADPKTGARVVDEKKCIGCGMCHEACPWN 193


>gi|167622633|ref|YP_001672927.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352655|gb|ABZ75268.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 213

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 8/84 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +V E C  C    C+  CP       E      +  + CI CG C   CP   I  D   
Sbjct: 110 IVPETCRQCNV--CMAACPQQAISIDEATGARVVDEELCIGCGYCAENCPQQVITIDKLT 167

Query: 62  GLELWLKINSEYATQWPNITTKKE 85
                  +  +     PN      
Sbjct: 168 EK----ALKCDLCQGKPNCAEVCP 187


>gi|154150413|ref|YP_001404031.1| nitrite/sulfite reductase hemoprotein beta subunit [Candidatus
           Methanoregula boonei 6A8]
 gi|153998965|gb|ABS55388.1| nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin
           domain protein [Methanoregula boonei 6A8]
          Length = 291

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    C   C        +  + +H D C++CG C   CP   I  +   
Sbjct: 170 CTGCG--TCTHYCREKAIEVTDGVVVLHKDLCMECGFCILPCPFRLISAEDPE 220



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 8/47 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           +  CP  C  E        G       P  C  CG C   C   AI+
Sbjct: 140 ISSCPNGCESERLNEIGITGTRRPVRDPGLCTGCGTCTHYCREKAIE 186


>gi|123492285|ref|XP_001326031.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121908939|gb|EAY13808.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 372

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 9   CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    C   C    V+  +  +    ++ DECI C +C   CPV A+        + 
Sbjct: 309 CLQCG--KCALSCRDNSVEAIHLIDGKWKVNHDECIGCALCHSVCPVQAMHMVESEKRKN 366

Query: 66  W 66
           W
Sbjct: 367 W 367


>gi|320354155|ref|YP_004195494.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032]
 gi|320122657|gb|ADW18203.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032]
          Length = 174

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---------EGENFLA---IHPDECIDCGVCEPECPVD 53
           T  C+ C    C   CP  C             E       I   ECI CG C   CP+D
Sbjct: 74  TMKCVAC--FMCQTNCPAKCIMIEAGERVDGRTEKMPVRFDIDLLECIYCGYCVEACPMD 131

Query: 54  AIKPDT 59
           AI+ DT
Sbjct: 132 AIRMDT 137


>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. 18P13]
          Length = 597

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C  T C  VCP        +N   I   +C+ CG C  +C   AI
Sbjct: 546 ADKCKGC--TACARVCPAGAISGSVKNPHTIDKSKCLKCGACIEKCRFGAI 594



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I  D+C  C  C   CP  AI
Sbjct: 542 YEIQADKCKGCTACARVCPAGAI 564


>gi|256425960|ref|YP_003126613.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
 gi|256040868|gb|ACU64412.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
          Length = 169

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +           GE  L           I+   CI CG CE  
Sbjct: 72  ENCTACGL--CAVACPAEAITMEAAERKAGEEHLYREEKYAARYEINMLRCIFCGFCEEA 129

Query: 50  CPVDAIK 56
           CP DAI 
Sbjct: 130 CPKDAIY 136



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          + C  CG+C   CP +AI  +
Sbjct: 72 ENCTACGLCAVACPAEAITME 92


>gi|262193410|ref|YP_003264619.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262076757|gb|ACY12726.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 840

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK---PDTEPG 62
           + C+ C    CV VCP +      N    +   +CI C  C   CP +A+      TEP 
Sbjct: 41  DRCVGCD--ACVAVCPTNVLDLISNKSRVLRFQDCIQCEQCMWACPTEALVMHLEGTEPP 98

Query: 63  LELWLKINSEY 73
                 IN  +
Sbjct: 99  RIKMPDINENF 109



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 35 IHPDECIDCGVCEPECPVD 53
          I+ D C+ C  C   CP +
Sbjct: 38 INDDRCVGCDACVAVCPTN 56


>gi|163784935|ref|ZP_02179692.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Hydrogenivirga
          sp. 128-5-R1-1]
 gi|159879794|gb|EDP73541.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Hydrogenivirga
          sp. 128-5-R1-1]
          Length = 338

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 15 TDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C++VCP+ D  Y   + + I+ D+CI CG C   CP +A
Sbjct: 22 QKCIDVCPIEDTLYIENDKIQINEDKCISCGACVGVCPTEA 62



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C  +CP     EG   L+I   P  C+ C +C   CP D +    +  L  +
Sbjct: 254 CTNCYV--CYHMCPTGALKEGNQKLSILFEPSLCVKCRICHEMCPEDCLHLADKLNLNTF 311


>gi|85059432|ref|YP_455134.1| electron transport complex protein RnfB [Sodalis glossinidius str.
           'morsitans']
 gi|123725402|sp|Q2NSZ6|RNFB_SODGM RecName: Full=Electron transport complex protein rnfB
 gi|84779952|dbj|BAE74729.1| putative iron-sulfur binding protein [Sodalis glossinidius str.
           'morsitans']
          Length = 190

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NCI C  T C++ CPVD        +  +  D C  C +C   CP + I+
Sbjct: 114 NCIGC--TKCIQACPVDAIVGATRAVHTVVSDLCTGCDLCVAPCPTNCIE 161



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 110 IDEGNCIGCTKCIQACPVDAI 130


>gi|83409917|emb|CAI64338.1| heterodisulfide reductase, alpha subunit [uncultured archaeon]
          Length = 660

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + C+ C    CV +CP       ++ L I    C  CG C   CP  A++ 
Sbjct: 588 VDEDICVACGV--CVPMCPFQALSIEDDKLKILTALCKGCGTCMAACPTGALEQ 639



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 24/87 (27%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC----FYEG---------------ENFLAIHPDECIDC 43
           Y+  + C  C    C E CPV+     F EG                    +    CIDC
Sbjct: 251 YLNIDECTGCGL--CTEKCPVEVPYVEFDEGIGTRKAIYTPFPQAVPLRALVDKSICIDC 308

Query: 44  GVCEPECPVDAIKPDTEPGLELWLKIN 70
           G C   C   AI  D     E + +++
Sbjct: 309 GACIKACERGAIDMD---QQETFSELD 332



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           +  D C+ CGVC P CP  A+  + +
Sbjct: 588 VDEDICVACGVCVPMCPFQALSIEDD 613


>gi|219668366|ref|YP_002458801.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538626|gb|ACL20365.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 192

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           +  C  C    CV+ CP    +  E+    H  ++CI C  C   CP  A +   E G
Sbjct: 55  SSACNHCAEAKCVKGCPTGAMHYAEDGTVQHDKNKCIGCKYCIWNCPYGAPQFLEESG 112


>gi|23013091|ref|ZP_00053036.1| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 162

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      +   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEPEPRPDGSRRARRYDLDMTKCIYCGLCQEACPVDAI 117



 Score = 37.4 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + EP
Sbjct: 61 ERCIACKLCEAICPAQAITIEPEP 84



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 102 CIYCGL--CQEACPVDAIVEGPNFEY 125


>gi|319794409|ref|YP_004156049.1| electron transport complex, rnfABCdge type, b subunit [Variovorax
           paradoxus EPS]
 gi|315596872|gb|ADU37938.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus EPS]
          Length = 211

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           M  V+ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I  +
Sbjct: 76  MA-VIDEAWCIGC--TLCLDACPTDAIVGINKRMHTVVEAHCTGCELCIPVCPVDCISLE 132

Query: 59  TE----PGLELWLKINSEYA 74
            E     G + W +  +E A
Sbjct: 133 VETPGRSGWQAWSEAQAEAA 152



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 26 FYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
            EG      I    CI C +C   CP DAI
Sbjct: 69 GTEGPRAMAVIDEAWCIGCTLCLDACPTDAI 99


>gi|295084317|emb|CBK65840.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 443

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 346 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 405

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 406 CPARPFRAIYIEGNPVQKE 424



 Score = 33.6 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 320 DCTVCGD-----VCPNGAILPISVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 374

Query: 53  DAI 55
            A+
Sbjct: 375 QAV 377


>gi|291557048|emb|CBL34165.1| Iron only hydrogenase large subunit, C-terminal domain
          [Eubacterium siraeum V10Sc8a]
          Length = 560

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV      +    I  DECI CG+C   CP +A
Sbjct: 10 NCKNC--YKCIRHCPVKSIRFSDGQANIVEDECILCGMCFVACPQNA 54


>gi|326318322|ref|YP_004235994.1| 4Fe-4S ferredoxin, iron-sulfur-binding protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323375158|gb|ADX47427.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
          Length = 96

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y GE    I PD+C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNHAIYLGEATYEIDPDKCTECVGHFDEPQCVQICPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 15/19 (78%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP  AI 
Sbjct: 7  DECINCDVCEPECPNHAIY 25


>gi|254419172|ref|ZP_05032896.1| nitrate reductase, beta subunit [Brevundimonas sp. BAL3]
 gi|196185349|gb|EDX80325.1| nitrate reductase, beta subunit [Brevundimonas sp. BAL3]
          Length = 508

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWDSG 238


>gi|146298998|ref|YP_001193589.1| NADH-quinone oxidoreductase, chain I [Flavobacterium johnsoniae
           UW101]
 gi|146153416|gb|ABQ04270.1| NADH dehydrogenase subunit I [Flavobacterium johnsoniae UW101]
          Length = 181

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-------GENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +            E  L           I+   CI CG+CE  
Sbjct: 76  ENCTACGL--CALSCPAEAITMKAAERKADEKHLYREEKYAEIYEINMLRCIFCGLCEEA 133

Query: 50  CPVDAIK 56
           CP DAI 
Sbjct: 134 CPKDAIY 140


>gi|91773397|ref|YP_566089.1| hypothetical protein Mbur_1428 [Methanococcoides burtonii DSM 6242]
 gi|91712412|gb|ABE52339.1| 4Fe-4S cluster-binding protein [Methanococcoides burtonii DSM 6242]
          Length = 379

 Score = 49.4 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            ++ T +C LC    CV  C      + +  L I+ ++CI C  C   CP  A++
Sbjct: 310 PFINTSSCTLCG--SCVLNCSPKAIEQEDGKLQINDEKCILCYCCRELCPSGAVE 362


>gi|330829394|ref|YP_004392346.1| formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           veronii B565]
 gi|328804530|gb|AEB49729.1| Formate-dependent nitrite reductase, 4Fe4S subunit [Aeromonas
           veronii B565]
          Length = 226

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP       + +  + ++ D C+ C  C   CP  
Sbjct: 96  SCQHCDNAPCVHVCPTGASHIRKKDGIVDVNADLCVGCMYCLAACPYQ 143


>gi|315180126|gb|ADT87040.1| iron-sulfur cluster-binding protein [Vibrio furnissii NCTC 11218]
          Length = 553

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  D CV+ CP      EG       + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCDRCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATSCPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTETQKFIE 247



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGE-NFLAIHPDECIDCGVCEPECPVDA 54
           T +C LC    CV VCP    + EGE   L     +C+ CG+C   CP +A
Sbjct: 417 TTDCTLC--MSCVAVCPTRALHHEGELPSLKFVEQDCVQCGLCVKACPENA 465



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCDRCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|291563209|emb|CBL42025.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [butyrate-producing bacterium SS3/4]
          Length = 279

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           M   V++ C+ C    C E CPV    +E       + + CI C  C   CP  A
Sbjct: 201 MDIQVSDECMGCG--SCAESCPVGAISFEDPKMT--NGEACISCMRCVEICPQSA 251



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 19  EVCPVDCFYEGENFLA-IHP------DECIDCGVCEPECPVDAIKPDTE 60
            VCPV+           + P      DEC+ CG C   CPV AI  +  
Sbjct: 181 NVCPVEVPGNRTYKEYKVLPMDIQVSDECMGCGSCAESCPVGAISFEDP 229


>gi|291530149|emb|CBK95734.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           siraeum 70/3]
          Length = 275

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V T  CI CK   C + CP       +N   I  D+C  CG C   CP
Sbjct: 210 VCTNGCIGCK--ICEKKCPHGAVIVADNHAVIDYDKCTSCGTCVSACP 255



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DC  VC  D     +    + P +C  CG C   CP   I 
Sbjct: 143 GYGDCAAVCGNDAITITDGVAVVDPAKCGGCGKCVTACPNHLIF 186


>gi|114776353|ref|ZP_01451398.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mariprofundus
          ferrooxydans PV-1]
 gi|114553183|gb|EAU55581.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mariprofundus
          ferrooxydans PV-1]
          Length = 84

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP    YEG +   I P  C +C        C+  CPVD 
Sbjct: 1  MALMITDDCINC--AVCEPECPNLAIYEGVDIYEIDPHLCTECVGHFDEPQCQMVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|77918361|ref|YP_356176.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77544444|gb|ABA88006.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380]
          Length = 299

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVD 53
            ++ T  C LC    C ++C  +    G +          +I    C  CGVC   CP +
Sbjct: 61  AFIETAKCQLCG--TCQKLCRFEA-VRGPDTQSGSPESGYSIDSTACEGCGVCAHFCPAE 117

Query: 54  AIKPDTEPGLELWL 67
           AI+       E ++
Sbjct: 118 AIRFTDAQNGEWYI 131


>gi|62289759|ref|YP_221552.1| NADH dehydrogenase subunit I [Brucella abortus bv. 1 str. 9-941]
 gi|82699687|ref|YP_414261.1| NADH dehydrogenase subunit I [Brucella melitensis biovar Abortus
           2308]
 gi|148560593|ref|YP_001258788.1| NADH dehydrogenase subunit I [Brucella ovis ATCC 25840]
 gi|189024004|ref|YP_001934772.1| NADH dehydrogenase subunit I [Brucella abortus S19]
 gi|225627307|ref|ZP_03785344.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo]
 gi|225852326|ref|YP_002732559.1| NADH dehydrogenase subunit I [Brucella melitensis ATCC 23457]
 gi|237815246|ref|ZP_04594244.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A]
 gi|254689066|ref|ZP_05152320.1| NADH dehydrogenase subunit I [Brucella abortus bv. 6 str. 870]
 gi|254693548|ref|ZP_05155376.1| NADH dehydrogenase subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|254697200|ref|ZP_05159028.1| NADH dehydrogenase subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701578|ref|ZP_05163406.1| NADH dehydrogenase subunit I [Brucella suis bv. 5 str. 513]
 gi|254706975|ref|ZP_05168803.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M163/99/10]
 gi|254709918|ref|ZP_05171729.1| NADH dehydrogenase subunit I [Brucella pinnipedialis B2/94]
 gi|254713919|ref|ZP_05175730.1| NADH dehydrogenase subunit I [Brucella ceti M644/93/1]
 gi|254717023|ref|ZP_05178834.1| NADH dehydrogenase subunit I [Brucella ceti M13/05/1]
 gi|254718919|ref|ZP_05180730.1| NADH dehydrogenase subunit I [Brucella sp. 83/13]
 gi|254730096|ref|ZP_05188674.1| NADH dehydrogenase subunit I [Brucella abortus bv. 4 str. 292]
 gi|256031411|ref|ZP_05445025.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M292/94/1]
 gi|256060922|ref|ZP_05451080.1| NADH dehydrogenase subunit I [Brucella neotomae 5K33]
 gi|256113345|ref|ZP_05454203.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 3 str. Ether]
 gi|256159532|ref|ZP_05457300.1| NADH dehydrogenase subunit I [Brucella ceti M490/95/1]
 gi|256254819|ref|ZP_05460355.1| NADH dehydrogenase subunit I [Brucella ceti B1/94]
 gi|256257315|ref|ZP_05462851.1| NADH dehydrogenase subunit I [Brucella abortus bv. 9 str. C68]
 gi|256264175|ref|ZP_05466707.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369242|ref|YP_003106750.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915]
 gi|260168545|ref|ZP_05755356.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|260545491|ref|ZP_05821232.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038]
 gi|260754564|ref|ZP_05866912.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870]
 gi|260757785|ref|ZP_05870133.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292]
 gi|260761610|ref|ZP_05873953.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883591|ref|ZP_05895205.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str.
           C68]
 gi|261213813|ref|ZP_05928094.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|261218830|ref|ZP_05933111.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1]
 gi|261222000|ref|ZP_05936281.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94]
 gi|261314438|ref|ZP_05953635.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M163/99/10]
 gi|261317464|ref|ZP_05956661.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           B2/94]
 gi|261321671|ref|ZP_05960868.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1]
 gi|261324922|ref|ZP_05964119.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33]
 gi|261752131|ref|ZP_05995840.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str.
           513]
 gi|261758018|ref|ZP_06001727.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|265983906|ref|ZP_06096641.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13]
 gi|265988500|ref|ZP_06101057.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M292/94/1]
 gi|265994751|ref|ZP_06107308.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3
           str. Ether]
 gi|265997964|ref|ZP_06110521.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1]
 gi|294852167|ref|ZP_06792840.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026]
 gi|297248164|ref|ZP_06931882.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196]
 gi|306838233|ref|ZP_07471085.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653]
 gi|306841952|ref|ZP_07474630.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2]
 gi|306843747|ref|ZP_07476346.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1]
 gi|75505301|sp|Q57DU3|NUOI_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502518|sp|Q2YNF5|NUOI_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918785|sp|A5VPZ1|NUOI_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737383|sp|B2S551|NUOI_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254767832|sp|C0RIE7|NUOI_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|62195891|gb|AAX74191.1| NuoI, NADH dehydrogenase I, I subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615788|emb|CAJ10786.1| 7Fe ferredoxin:3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur
           binding domain [Brucella melitensis biovar Abortus 2308]
 gi|148371850|gb|ABQ61829.1| NADH dehydrogenase I, I subunit [Brucella ovis ATCC 25840]
 gi|189019576|gb|ACD72298.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225617312|gb|EEH14357.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo]
 gi|225640691|gb|ACO00605.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis ATCC
           23457]
 gi|237790083|gb|EEP64293.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A]
 gi|255999402|gb|ACU47801.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915]
 gi|260096898|gb|EEW80773.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038]
 gi|260668103|gb|EEX55043.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292]
 gi|260672042|gb|EEX58863.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674672|gb|EEX61493.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870]
 gi|260873119|gb|EEX80188.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str.
           C68]
 gi|260915420|gb|EEX82281.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|260920584|gb|EEX87237.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94]
 gi|260923919|gb|EEX90487.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1]
 gi|261294361|gb|EEX97857.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1]
 gi|261296687|gb|EEY00184.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           B2/94]
 gi|261300902|gb|EEY04399.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33]
 gi|261303464|gb|EEY06961.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M163/99/10]
 gi|261738002|gb|EEY25998.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|261741884|gb|EEY29810.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str.
           513]
 gi|262552432|gb|EEZ08422.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1]
 gi|262765864|gb|EEZ11653.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3
           str. Ether]
 gi|263094393|gb|EEZ18238.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660697|gb|EEZ30958.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M292/94/1]
 gi|264662498|gb|EEZ32759.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13]
 gi|294820756|gb|EFG37755.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026]
 gi|297175333|gb|EFH34680.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196]
 gi|306275938|gb|EFM57651.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1]
 gi|306287985|gb|EFM59393.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2]
 gi|306406677|gb|EFM62904.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653]
 gi|326408833|gb|ADZ65898.1| 7Fe ferredoxin [Brucella melitensis M28]
 gi|326538549|gb|ADZ86764.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis M5-90]
          Length = 163

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|332374474|gb|AEE62378.1| unknown [Dendroctonus ponderosae]
          Length = 609

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV      C     N     I  + CI CG+C  +CP DA
Sbjct: 20 VNADKCKPKRCR-QECKKSCPVVRMGKLCIEVSPNSKIAVISEELCIGCGICVKKCPFDA 78

Query: 55 I 55
          I
Sbjct: 79 I 79


>gi|315425441|dbj|BAJ47105.1| pyruvate ferredoxin oxidoreductase, gamma subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 294

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  CK   C   CP      + EN   I  + C  C +C  ECP+ AI    E  
Sbjct: 239 CTGCKV--CFVYCPDSAISLDAENKPVIDYEHCKGCLICVVECPIRAISSVREVE 291


>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
 gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
          Length = 599

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            +V+  E C  C    C + CP      E +    I P +CI CG C   C  DA+
Sbjct: 538 AFVIDEEACRGC--MRCSKACPAGAVSGEVKKPHHIDPVKCIACGSCREACNFDAV 591



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             I  + C  C  C   CP  A+  + +   
Sbjct: 539 FVIDEEACRGCMRCSKACPAGAVSGEVKKPH 569


>gi|303326499|ref|ZP_07356942.1| putative reductase, iron-sulfur binding subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302864415|gb|EFL87346.1| putative reductase, iron-sulfur binding subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 263

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCP    Y  E+ +  +    CI C  C   CP  A
Sbjct: 124 CNHCTNPPCVRVCPTQATYRMEDGIVAMDYHRCIGCRFCMAGCPYGA 170


>gi|295106206|emb|CBL03749.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 117

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEP 48
           C+ C++  CV VCPV   Y+G++ +  I  D CI C  C P
Sbjct: 52 PCMQCENPPCVSVCPVQATYKGDDGIVVIDADRCIGCKYCTP 93


>gi|301092714|ref|XP_002997210.1| ATP-binding cassette sub-family E member 1 [Phytophthora
          infestans T30-4]
 gi|262111520|gb|EEY69572.1| ATP-binding cassette sub-family E member 1 [Phytophthora
          infestans T30-4]
          Length = 626

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENFLA--IHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV      C   G       I    CI CG+C  +CP +A
Sbjct: 11 VSTDKCKPKKCR-QECKKSCPVVRMGKLCIEVGPKSKVAFISEQLCIGCGICVKKCPFEA 69

Query: 55 I 55
          I
Sbjct: 70 I 70


>gi|306520652|ref|ZP_07406999.1| anaerobic sulfite reductase, subunit C [Clostridium difficile
           QCD-32g58]
          Length = 302

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V       N +    D+CI CG C   CP +A
Sbjct: 172 DRCVNCG--ACVKKCSKISVGALKTENNKVVRDKDKCIGCGECVLNCPTNA 220


>gi|134046604|ref|YP_001098089.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132664229|gb|ABO35875.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 58

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
          M YVV E+ CI C    CV  CP +   E ++    I P +C  CG C   CPV  IK +
Sbjct: 1  MAYVVKEDECIACG--ACVPSCPENAISEKDDGKAVIDPAKCTGCGDCADICPVACIKEE 58


>gi|254362434|ref|ZP_04978543.1| formate-dependent nitrite reductase [Fe-S] protein NrfC [Mannheimia
           haemolytica PHL213]
 gi|110735267|gb|ABG89204.1| nitrite reductase Fe-S protein [Mannheimia haemolytica]
 gi|153094023|gb|EDN74939.1| formate-dependent nitrite reductase [Fe-S] protein NrfC [Mannheimia
           haemolytica PHL213]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    +       I  H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCTNAPCVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|85713243|ref|ZP_01044269.1| electron transport complex protein RnfB [Idiomarina baltica OS145]
 gi|85692938|gb|EAQ30910.1| electron transport complex protein RnfB [Idiomarina baltica OS145]
          Length = 194

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 112 DECIGC--TKCIQACPVDAILGAAKQMHTVIEHECTGCDLCVEPCPVDCI 159



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  DECI C  C   CPVDAI
Sbjct: 109 IREDECIGCTKCIQACPVDAI 129


>gi|313216915|emb|CBY38127.1| unnamed protein product [Oikopleura dioica]
 gi|313233922|emb|CBY10090.1| unnamed protein product [Oikopleura dioica]
 gi|313237823|emb|CBY12956.1| unnamed protein product [Oikopleura dioica]
          Length = 159

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP      E E             I   +CI CG C   CPVDAI
Sbjct: 58  ERCIACKL--CEAACPAQAITIEAEERADGSRRTTRYDIDMTKCIYCGFCMEACPVDAI 114



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C+E CPVD   EG NF  
Sbjct: 99  CIYCGF--CMEACPVDAIVEGPNFEY 122



 Score = 37.4 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 58 ERCIACKLCEAACPAQAITIEAEERAD 84


>gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 598

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C + CP +    + +    I   +CI CGVC  +CP  AI
Sbjct: 547 DLCKGCG--ICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|302876614|ref|YP_003845247.1| hydrogenase large subunit domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307687288|ref|ZP_07629734.1| hydrogenase large subunit domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302579471|gb|ADL53483.1| hydrogenase large subunit domain protein [Clostridium cellulovorans
           743B]
          Length = 447

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 7   ENC-ILCKH----TDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           ++C   C      T C E CP D            I  D C  CG C   CP  ++   T
Sbjct: 79  QDCPTDCPDPSGRTHCQESCPFDAIIWDSEKSTTVIDNDACTGCGFCVEACPSGSLLDRT 138

Query: 60  E 60
           E
Sbjct: 139 E 139


>gi|254512703|ref|ZP_05124769.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae
          bacterium KLH11]
 gi|221532702|gb|EEE35697.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae
          bacterium KLH11]
          Length = 396

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C   CPV      +N + ++ D C  C  C P CP  +I
Sbjct: 13 EICIRC--YTCEMTCPVQAIEHDDNNVVVNADLCNFCMDCIPVCPTGSI 59



 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMD 94
           I P+ CI C  CE  CPV AI+ D        + +N++      +         S  +  
Sbjct: 10  IDPEICIRCYTCEMTCPVQAIEHDDNN-----VVVNADLCNFCMDCIPVC-PTGSIDEWR 63

Query: 95  GVKQKY 100
            V++ Y
Sbjct: 64  VVEEAY 69


>gi|218459472|ref|ZP_03499563.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Rhizobium etli
           Kim 5]
          Length = 205

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 63  CVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 117


>gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725]
 gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725]
 gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 598

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C + CP +    + +    I   +CI CGVC  +CP  AI
Sbjct: 547 DLCKGCG--ICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|126460737|ref|YP_001057015.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum calidifontis JCM 11548]
 gi|126250458|gb|ABO09549.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum calidifontis JCM 11548]
          Length = 96

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + C  C+   C  +CP  C+ +  + + +  + C++CG C   CP   I+ +  
Sbjct: 32 DMCRKCEKKPCTYMCPAKCYVQQGDIIVLSTEACVECGTCRVVCPHGNIEWNYP 85


>gi|18977851|ref|NP_579208.1| putative oxidoreductase, Fe-S subunit [Pyrococcus furiosus DSM
           3638]
 gi|18893607|gb|AAL81603.1| putative oxidoreductase, Fe-S subunit [Pyrococcus furiosus DSM
           3638]
          Length = 173

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           V   C+ C    CV  CP +     E    + ++ ++CI CG C   CP
Sbjct: 54  VPHTCVQCPDYPCVNACPTNALSVDEKTGAVVVNEEKCITCGACVLACP 102


>gi|328951911|ref|YP_004369245.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452235|gb|AEB08064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 262

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 16/71 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENF-----LAIHPDECIDCGVCEPECPVD 53
           + C+LC    CV VC  +            G N        +H + CI CG C   CP  
Sbjct: 126 DLCVLCGL--CVRVC-QEAIGASAISFVGRGGNRRVSTPFEMHSEACIGCGACAEICPTG 182

Query: 54  AIKPDTEPGLE 64
           AI+ + +    
Sbjct: 183 AIRMEDKGPWR 193


>gi|297625386|ref|YP_003687149.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding:Aromatic-ring
           hydroxylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921151|emb|CBL55698.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding:Aromatic-ring
           hydroxylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 543

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYE-GENFLA-IHPDECIDCGVCEPECPVDAIK 56
           NC  C    C   CP D   + G+        D+C  CG C  +CPV AI+
Sbjct: 490 NCFECDG--CYGSCPEDAIVKLGKGHRYRFDYDKCTGCGTCFEQCPVHAIE 538


>gi|296136911|ref|YP_003644153.1| nitrate reductase, beta subunit [Thiomonas intermedia K12]
 gi|295797033|gb|ADG31823.1| nitrate reductase, beta subunit [Thiomonas intermedia K12]
          Length = 507

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + E G
Sbjct: 183 CEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISACPYKKIYYNWESG 238


>gi|237722563|ref|ZP_04553044.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|294646004|ref|ZP_06723670.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809334|ref|ZP_06768044.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC
          1b]
 gi|229448373|gb|EEO54164.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292638687|gb|EFF57039.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443426|gb|EFG12183.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC
          1b]
          Length = 600

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 8  NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    C +VC  +        EG  +  +  D+CIDCG+CE  CP+  I    +  
Sbjct: 9  ECCGCN--ACGDVCTHEAITFQTDIEGFWYPVVDKDKCIDCGLCEKVCPIINIDVLKKND 66

Query: 63 LELWLKINSEYATQWPNI 80
           E  +     YA +  NI
Sbjct: 67 FEKPIC----YAAEHKNI 80


>gi|256827766|ref|YP_003151725.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
 gi|256583909|gb|ACU95043.1| Fe-S-cluster-containing hydrogenase subunit [Cryptobacterium curtum
           DSM 15641]
          Length = 235

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           MT+ +  +C +C++  CV+VCP    Y  E+ +  +  + C+ C  C   CP  
Sbjct: 55  MTF-LPVSCQMCENPSCVKVCPTGASYVDEDGVVLVDYERCVGCRYCMSACPYG 107


>gi|261856373|ref|YP_003263656.1| electron transport complex, RnfABCDGE type subunit beta
           [Halothiobacillus neapolitanus c2]
 gi|261836842|gb|ACX96609.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothiobacillus neapolitanus c2]
          Length = 192

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V+ E+ CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 108 VIDESVCIGC--TKCIQACPVDAILGAAKQMHTVIAAECTGCELCVAPCPVDCI 159


>gi|206895204|ref|YP_002246388.1| inosine-5'-monophosphate dehydrogenase related protein viii
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737821|gb|ACI16899.1| inosine-5'-monophosphate dehydrogenase related protein viii
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 443

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C    C  VCP          LA   + C  CG+C   CPV 
Sbjct: 392 CVDCGL--CTSVCPTGALKLINAKLAFTKEACTKCGLCSDICPVG 434



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 12/39 (30%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
            P  C+DCG+C   CP  A+K            IN++ A
Sbjct: 389 DP-TCVDCGLCTSVCPTGALKL-----------INAKLA 415


>gi|182438078|ref|YP_001825797.1| putative 4Fe-4S cluster-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326778723|ref|ZP_08237988.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466594|dbj|BAG21114.1| putative 4Fe-4S cluster-binding protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326659056|gb|EGE43902.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Streptomyces cf. griseus XylebKG-1]
          Length = 200

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +    D   CI C  C   CP    K D +  L+
Sbjct: 53  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCSNCVNACPFGVPKIDLQAKLQ 112


>gi|218782885|ref|YP_002434203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764269|gb|ACL06735.1| Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 933

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 25/84 (29%)

Query: 3   YVVTENCILCKHTDCVEVCP------------------VDCFYEGENFLAIHPDECID-- 42
           YV  + C+ C    C E CP                  V+         AI    CI   
Sbjct: 27  YVDQDLCVGCG--ACAEKCPKKIPDDYNTGLSKRKAIYVEYAQAVPLKYAIDARYCIKLQ 84

Query: 43  ---CGVCEPECPVDAIKPDTEPGL 63
              CG CE  CP  AI+ D +P  
Sbjct: 85  KDKCGNCEKVCPAGAIRYDQKPEQ 108



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 8   NCILCKHTDCVEVCPVDCF---YEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
           NC  C    CV +CP        EG      +I+P  C  CG+C   C   AI 
Sbjct: 866 NCSECGV--CVSLCPYSAPSFTTEGPFAGKASINPVLCKGCGLCVASCRSGAIH 917



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 14/34 (41%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           P  C +CGVC   CP  A    TE        IN
Sbjct: 864 PANCSECGVCVSLCPYSAPSFTTEGPFAGKASIN 897


>gi|225164850|ref|ZP_03727073.1| ferredoxin [Opitutaceae bacterium TAV2]
 gi|224800539|gb|EEG18912.1| ferredoxin [Opitutaceae bacterium TAV2]
          Length = 56

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M+Y +T E C+ C    C+  CP++    G     I P  CIDCG C   CP  A   +
Sbjct: 1  MSYQITPEKCVACG--ACIADCPMEAIKAGSP-YRIDPKLCIDCGACADACPESAPHSE 56


>gi|118442897|ref|YP_877103.1| hydrogenase [Clostridium novyi NT]
 gi|118133353|gb|ABK60397.1| hydrogenase [Clostridium novyi NT]
          Length = 448

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 15  TDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           T C + CP D     +N     I   +C+DCG C   CP  +I    E
Sbjct: 92  TRCQKSCPFDAILVDKNTSTTYISLGKCVDCGFCVDACPTGSILDKVE 139


>gi|120612260|ref|YP_971938.1| 4Fe-4S ferredoxin [Acidovorax citrulli AAC00-1]
 gi|120590724|gb|ABM34164.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
          citrulli AAC00-1]
          Length = 97

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y GE    I PD+C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNHAIYLGEATYEIDPDKCTECVGHFDEPQCVQICPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 15/19 (78%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP  AI 
Sbjct: 7  DECINCDVCEPECPNHAIY 25


>gi|89900454|ref|YP_522925.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89345191|gb|ABD69394.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
          T118]
          Length = 89

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 14/87 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +  Y G     I P +C +C        C   CPV  
Sbjct: 1  MALIITDECINCDV--CEPECPNEAIYLGVEIYQIDPHKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 I------KPDTEPGLELWLKINSEYAT 75
          I        D E   + + ++  E   
Sbjct: 59 IPIDPQFVEDRETLWQKYRRLQLELTK 85


>gi|89901860|ref|YP_524331.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346597|gb|ABD70800.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 545

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 6   TENCI-------LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ C         C  T C++VC V       N + I P  C  C  C   CP  A
Sbjct: 166 TDLCAHGVSGFQGC--TRCLDVCSVQAIASAGNTVRIDPYLCQGCATCTLACPTGA 219



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDA 54
           V  + C LC    CV +CP       +     L      C+ CG+C   CP +A
Sbjct: 417 VNAQRCTLC--FACVNLCPTSALKAVDAKTQQLVFQESACVQCGLCVVGCPEEA 468


>gi|17987433|ref|NP_540067.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. 16M]
 gi|256044489|ref|ZP_05447393.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563843|ref|ZP_05834329.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. 16M]
 gi|265990913|ref|ZP_06103470.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. Rev.1]
 gi|81851731|sp|Q8YGK8|NUOI_BRUME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|17983125|gb|AAL52331.1| NADH-quinone oxidoreductase chain i [Brucella melitensis bv. 1 str.
           16M]
 gi|260153859|gb|EEW88951.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. 16M]
 gi|263001697|gb|EEZ14272.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 163

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|116749279|ref|YP_845966.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans
          MPOB]
 gi|116698343|gb|ABK17531.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans
          MPOB]
          Length = 572

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLEL 65
           C  C    C+  CPV          A+ P  C+ CG C   CP  A  ++ D E   +L
Sbjct: 14 ECQDC--FKCIRECPVKAIKVENACAAVIPQLCVLCGHCVEVCPNGAKHVRDDLEQARQL 71

Query: 66 WLKINSEYATQWPN-ITTKKESLPSA 90
            + +  +A+  P+ ++   +  PSA
Sbjct: 72 LKEKDQVFASLAPSFVSEFPDIPPSA 97


>gi|325497184|gb|EGC95043.1| electron transport complex protein RnfB [Escherichia fergusonii
           ECD227]
          Length = 192

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--KPDT 59
           V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +P  
Sbjct: 111 VIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCISLQPVA 168

Query: 60  EPGLELWLKIN 70
           E        +N
Sbjct: 169 ETPDSWKWDLN 179


>gi|325119973|emb|CBZ55526.1| RNase L inhibitor, related [Neospora caninum Liverpool]
          Length = 613

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 11/55 (20%)

Query: 12 CKHTDCVEVCPVDCFYEGENFLAIHPDE-----------CIDCGVCEPECPVDAI 55
          CK   C + C  +C       L I  D            CI CG+C  +CP +AI
Sbjct: 27 CKPKKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVKKCPFEAI 81


>gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 632

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           C  C    CV+ CPV      +     I    C+ CG C   C   A++
Sbjct: 584 CKGC--RLCVKACPVGAIMGEKKQPHRIDEGLCVKCGACAAACKFGAVE 630



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I+P  C  C +C   CPV AI  + +    
Sbjct: 579 INPALCKGCRLCVKACPVGAIMGEKKQPHR 608


>gi|288560653|ref|YP_003424139.1| energy-converting hydrogenase A subunit P EhaP [Methanobrevibacter
           ruminantium M1]
 gi|288543363|gb|ADC47247.1| energy-converting hydrogenase A subunit P EhaP [Methanobrevibacter
           ruminantium M1]
          Length = 344

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 3   YVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           Y+V +  CI C    C++ C V    E ++ ++++  +CI CG C   CPV
Sbjct: 125 YIVDDYLCIRC--HKCMDACEVGAIEEFDDRVSVNQSKCISCGKCLEACPV 173



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 4  VVTENCILCKHTDCVEVCP--------VDCFYEGENFL---AIHPDECIDCGVCEPECP 51
          V+ ENCI C    C   CP         D   E    L    I+   CI CG C   CP
Sbjct: 42 VIKENCIGCG--SCTASCPSPNAIKLIRDSDTEDAFGLIYPVINKASCIRCGFCAEVCP 98



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +ENC  C    C+  CP         ++ +    ++C+ C +C   CP   IK 
Sbjct: 262 SENCKKC--QMCIPDCPTGAISFDYDKDTIVRDKEKCLRCSICYQTCPFGVIKY 313



 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 18/69 (26%)

Query: 8   NCILCKHTDCVEVCPVDC----------------FYEGENFLAIHPDECIDCGVCEPECP 51
           +CI C    C EVCP                       +    +    CI C  C   C 
Sbjct: 86  SCIRCGF--CAEVCPSTPKTLECGENHFIREEFNIIPSKRKYIVDDYLCIRCHKCMDACE 143

Query: 52  VDAIKPDTE 60
           V AI+   +
Sbjct: 144 VGAIEEFDD 152


>gi|237714546|ref|ZP_04545027.1| ferredoxin [Bacteroides sp. D1]
 gi|229445315|gb|EEO51106.1| ferredoxin [Bacteroides sp. D1]
          Length = 300

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP ++I
Sbjct: 201 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNSI 248



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 125 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 172


>gi|224371301|ref|YP_002605465.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223694018|gb|ACN17301.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 293

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C   +C+E C      E      + P  C  CGVC   CPVDAI  + +   E +L
Sbjct: 68  CTECG--ECLERCQFKAISED---FIVDPIACEGCGVCVHFCPVDAISFEQQVCGEKFL 121



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 12/30 (40%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          G     I P  C +CG C   C   AI  D
Sbjct: 57 GGRLAEIDPGICTECGECLERCQFKAISED 86


>gi|150400534|ref|YP_001324300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013237|gb|ABR55688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 383

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V + C+ C    CV VCPV+      +   +  ++C+ C +C   CP +AI 
Sbjct: 128 VVDACVGCGV--CVPVCPVEAINIENDRAVVDKNKCMYCSICAQTCPWNAIY 177



 Score = 42.4 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    C E+CP        + L +  P  C  CG+C   CPVDA+  D +
Sbjct: 197 DKCIGC--MACAEICPGSMISPDVDNLKVELPKVCPACGLCVEVCPVDALSLDVK 249



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 14/64 (21%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHP-------DECIDCGVCEPECPVDAIK 56
           CILC+   CVEVCP++        +      I P       D C+ CGVC P CPV+AI 
Sbjct: 91  CILCE--MCVEVCPIEIISIPTIIDKPKKEIIIPKDPIAVVDACVGCGVCVPVCPVEAIN 148

Query: 57  PDTE 60
            + +
Sbjct: 149 IEND 152



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          +C LC    CV+VCP     E    ++ +   C  CG C   CP 
Sbjct: 33 SCNLC--MQCVKVCPTKALSEVAGKISYNSSICKKCGACATACPT 75



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  VCP D         ++    CI CG C   CP  A+K
Sbjct: 274 CANVCPTDAIIAESESKSV--KMCIVCGACVTACPTGALK 311


>gi|126460202|ref|YP_001056480.1| hypothetical protein Pcal_1596 [Pyrobaculum calidifontis JCM 11548]
 gi|126249923|gb|ABO09014.1| phosphoadenosine phosphosulfate reductase [Pyrobaculum calidifontis
           JCM 11548]
          Length = 594

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 12  CKHTD-CVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPV 52
           C   D CVE CP             A+  ++CI C +C   CP 
Sbjct: 542 CGDCDLCVEWCPTGALRRTGPGRSFAVDAEKCIGCLLCSKACPA 585


>gi|24212861|ref|NP_710342.1| NADH dehydrogenase (ubiquinone) chain I [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45656052|ref|YP_000138.1| NADH dehydrogenase II subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81472291|sp|Q8F9N0|NUOI_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81699547|sp|Q72VZ9|NUOI_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24193522|gb|AAN47360.1| NADH dehydrogenase (ubiquinone) chain I [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599285|gb|AAS68775.1| NADH dehydrogenase I I subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 175

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 19/74 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDE------------CIDCGVCEPE 49
           E C  C    C+ +CP D  Y            +HP++            CI CG+CE  
Sbjct: 76  ERCTSC--FCCMWICPADAIYIEAAEVTPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEA 133

Query: 50  CPVDAIKPDTEPGL 63
           CP  AI  D    +
Sbjct: 134 CPKGAIYLDGPGEM 147


>gi|2209070|dbj|BAA20528.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp.]
          Length = 647

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +VV + C  CK   C++   CP   +        + P  C  CG C   CP DA +P  E
Sbjct: 588 HVVEDKCTGCK--ICIKTYGCPAIYWDPETKKAKVDPTMCWGCGGCAQVCPFDAFEPMKE 645

Query: 61  PG 62
             
Sbjct: 646 GE 647


>gi|120599773|ref|YP_964347.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146292291|ref|YP_001182715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120559866|gb|ABM25793.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563981|gb|ABP74916.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319425591|gb|ADV53665.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 214

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           VV   C  C+   C EVCP       +      I  + C+ CG C  +CP   IK
Sbjct: 110 VVPSTCRHCEV--CTEVCPQQAISTNQQTGAKVIDEERCVGCGYCADKCPQQVIK 162


>gi|325972702|ref|YP_004248893.1| PAS/PAC sensor protein [Spirochaeta sp. Buddy]
 gi|324027940|gb|ADY14699.1| putative PAS/PAC sensor protein [Spirochaeta sp. Buddy]
          Length = 603

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  CPV      +    +  D CI CG C   CP  A
Sbjct: 11 ECRDC--YKCVRGCPVKAIQVKDGSAVVVKDRCIYCGHCVDICPSHA 55


>gi|303248954|ref|ZP_07335201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489677|gb|EFL49613.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 258

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA 54
           C  C+   CV VCP    ++  + + +     CI C  C   CP  A
Sbjct: 121 CNHCEQPMCVRVCPTQATFQRPDGIVMMDFHRCIGCRYCMAGCPFGA 167


>gi|302336797|ref|YP_003802003.1| cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
 gi|301633982|gb|ADK79409.1| Cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
          Length = 308

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V    C  C    C+  C  D  +   +   + P  C  CGVC   CP  A   + E 
Sbjct: 71  AVVDAGLCTGCG--KCISFCRFDAIHMENSVAQVDPVGCEGCGVCTLVCPSSAFTLEEEM 128

Query: 62  GLELWL 67
             + ++
Sbjct: 129 AGQWFV 134



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 11/35 (31%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           G     +    C  CG C   C  DAI  +     
Sbjct: 67  GGERAVVDAGLCTGCGKCISFCRFDAIHMENSVAQ 101


>gi|224825660|ref|ZP_03698764.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
 gi|224601884|gb|EEG08063.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
          Length = 232

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           ++CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 84  DSCIGC--TLCIQACPVDAIVGAAKLMHTVIAAECTGCELCVAPCPVDCI 131



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  D CI C +C   CPVDAI
Sbjct: 80  VIQEDSCIGCTLCIQACPVDAI 101


>gi|187779575|ref|ZP_02996048.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC
          15579]
 gi|187773200|gb|EDU37002.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC
          15579]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|171060402|ref|YP_001792751.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170777847|gb|ACB35986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 743

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           T+ C +C    CV  CP     +      L      C+ CG+C   CP DAI+
Sbjct: 606 TQRCTMCL--SCVGACPESALADNPERPQLRFIEKNCVQCGLCASTCPEDAIQ 656



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           V   PV     G   + + P  C+ CG C   CP  A+       ++ 
Sbjct: 366 VAAMPVAASGGG---IVVEPHLCVGCGACSTVCPSGALTFAYPGPVDQ 410



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           L I    C  C  C   CP  A+  + E     +++ N
Sbjct: 602 LVIDTQRCTMCLSCVGACPESALADNPERPQLRFIEKN 639



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 206 IDLDLCTRCNACIDACPEGAI 226


>gi|170759045|ref|YP_001787152.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3
          str. Loch Maree]
 gi|169406034|gb|ACA54445.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3
          str. Loch Maree]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|170754864|ref|YP_001781378.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1
          str. Okra]
 gi|169120076|gb|ACA43912.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1
          str. Okra]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|188586757|ref|YP_001918302.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351444|gb|ACB85714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 508

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M  V    C  CK   C + CP +          I+ + C+ C  C   CP DA
Sbjct: 1  MIRVDEVKCKGCKV--CEKTCPTNAVTIENKLAVIN-ENCVGCNACVRVCPFDA 51



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 14/51 (27%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPEC 50
          V+ ENC+ C    CV VCP D       E E  L         C  C   C
Sbjct: 32 VINENCVGCN--ACVRVCPFDAMTKVADEREGVLV--------CTSCPIGC 72


>gi|167750409|ref|ZP_02422536.1| hypothetical protein EUBSIR_01383 [Eubacterium siraeum DSM 15702]
 gi|167656560|gb|EDS00690.1| hypothetical protein EUBSIR_01383 [Eubacterium siraeum DSM 15702]
          Length = 610

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI CK   C+    CP       +  + I  + C  C +C   CPV+AI
Sbjct: 556 ISDKCIQCK--KCIREIGCP--ALIVADGKVTIDNNLCTGCKLCAQICPVNAI 604


>gi|154500502|ref|ZP_02038540.1| hypothetical protein BACCAP_04175 [Bacteroides capillosus ATCC
           29799]
 gi|150270733|gb|EDM98029.1| hypothetical protein BACCAP_04175 [Bacteroides capillosus ATCC
           29799]
          Length = 294

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 6   TENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    C + CP+D   +   N L     ECI CG C+  CP  AI
Sbjct: 236 AQKCTQCG--ACQKACPMDIPVHTTPNSL-----ECIRCGKCKAACPHGAI 279



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 17  CVEVCPVDCFYE--GENFLA---IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  +CP+   Y       L    I   +C  CG C+  CP+D     T   LE
Sbjct: 211 CRYLCPLGAIYGLFNPVALYRFRIDAQKCTQCGACQKACPMDIPVHTTPNSLE 263


>gi|145536107|ref|XP_001453781.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421514|emb|CAK86384.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 134 ERCIACKL--CQSACPARAITIETEPRPDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 190



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 115 PLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 157



 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG N+  
Sbjct: 175 CIYCGF--CQEACPVDAIVEGPNYEY 198


>gi|116748363|ref|YP_845050.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697427|gb|ABK16615.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 281

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C    C+++C          +    I P  C  CGVC   C   AI+ D     
Sbjct: 218 DACIGC--RACLKMCQFGAIGFSVLDRNADIDPLRCYGCGVCREACEAGAIRLDARHEH 274



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 4   VVTENCILCKHTDCV----EVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +   C  C   DC+           F+  E   +I  D CI C  C   C   AI
Sbjct: 181 FIGAIC-NCDRRDCLAMVSHRYGFQLFFRAEYVASIDKDACIGCRACLKMCQFGAI 235


>gi|317484410|ref|ZP_07943325.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924329|gb|EFV45500.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 179

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            C+ C    CVEVCP +     E +  + I  + C+ CG C+  CP   I  D
Sbjct: 84  ACVQCPQPRCVEVCPKEALIRRESDGIVFIREEACVGCGACQKACPHHLIWVD 136


>gi|269148509|gb|ACZ28647.1| nitrate reductase beta subunit [uncultured organism]
          Length = 646

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D C    +C   CP   I  + E G
Sbjct: 182 CNHCLNPACVASCPSGAMYKREEDGIVLIDQDRCRGWRMCVSACPYKKIYYNWESG 237


>gi|307182361|gb|EFN69628.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Camponotus floridanus]
          Length = 146

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 45  ERCIACKL--CEAICPAQAITIEAEERADGSRRTTRYDIDMSKCIYCGFCQEACPVDAI 101



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 45 ERCIACKLCEAICPAQAITIEAEERAD 71



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 86  CIYCGF--CQEACPVDAIVEGPNF 107


>gi|295106638|emb|CBL04181.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 258

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   CV VCP    F   +  + +    CI C  C   CP  A
Sbjct: 114 CNHCEEPPCVRVCPTKATFKRDDGIVEMDYHRCIGCRFCMAACPYGA 160


>gi|182415695|ref|YP_001820761.1| electron-transferring-flavoprotein dehydrogenase [Opitutus terrae
           PB90-1]
 gi|177842909|gb|ACB77161.1| Electron-transferring-flavoprotein dehydrogenase [Opitutus terrae
           PB90-1]
          Length = 608

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPEC 50
           T+V    C  C    C++ C       G N +     ++C+ CG C   C
Sbjct: 532 TFVDPNTCAQCGVKICIDACSGQAISAGTNGVPQFDREKCVHCGACLWNC 581


>gi|119774139|ref|YP_926879.1| ferredoxin, 4Fe-4S [Shewanella amazonensis SB2B]
 gi|119766639|gb|ABL99209.1| ferredoxin, 4Fe-4S [Shewanella amazonensis SB2B]
          Length = 83

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      G     I PD C +C        C   CP++ 
Sbjct: 1  MALIIDDSCINCD--MCEPECPNQAIAMGAEIYEIDPDRCTECVGHYDKPTCVSVCPINC 58

Query: 55 IKPDTEPGLEL 65
          I PD       
Sbjct: 59 IDPDPAHPESQ 69


>gi|332090814|gb|EGI95906.1| 4Fe-4S binding domain protein [Shigella boydii 5216-82]
          Length = 206

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|327398294|ref|YP_004339163.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Hippea maritima DSM 10411]
 gi|327180923|gb|AEA33104.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Hippea maritima DSM 10411]
          Length = 329

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+++CP         + +I  D CI CG+C   CP  AI
Sbjct: 29 SCIKICPTGAIKLTP-YPSISEDACIKCGLCYAACPTTAI 67



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +T +C LC    C  VCP +      E +  +  +P  CI+C  C+  C   AIK +T
Sbjct: 216 TITNSCDLCG--ICEVVCPTEVILIQKEQKGSIWFNPAACINCQNCQNGCLKGAIKLET 272


>gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
 gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
          Length = 598

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    C + CP +    + +    I   +CI CGVC  +CP  AI
Sbjct: 547 DLCKGCG--ICAKNCPANAITGQIKKPFEIDQSKCIKCGVCIEKCPFKAI 594



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CP     +    + I  D C  CG+C   CP +AI    +   E
Sbjct: 531 CPAGA-CKALLRIVIDKDLCKGCGICAKNCPANAITGQIKKPFE 573


>gi|309785015|ref|ZP_07679648.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 1617]
 gi|308927385|gb|EFP72859.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 1617]
          Length = 162

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 40  ERCVACNL--CAVACPVGCISLQKTETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 97

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 98  LTPDFEMGEY 107


>gi|331647164|ref|ZP_08348258.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
 gi|330911480|gb|EGH39990.1| putative oxidoreductase, Fe-S subunit [Escherichia coli AA86]
 gi|331043947|gb|EGI16083.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M605]
          Length = 208

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|295093334|emb|CBK82425.1| Thioredoxin reductase [Coprococcus sp. ART55/1]
          Length = 525

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDAIKPDTE 60
           T+N I C    C + CP  C   G N  ++     +P  CI CG+C   C   AI    E
Sbjct: 396 TQN-IPCN--PCQDACPKGCISIGANITSLPTVTENP--CIGCGMCVASCSGQAIFLVDE 450

Query: 61  PGLELW 66
              + +
Sbjct: 451 DTGDGY 456


>gi|242239348|ref|YP_002987529.1| electron transport complex protein RnfB [Dickeya dadantii Ech703]
 gi|242131405|gb|ACS85707.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya
           dadantii Ech703]
          Length = 191

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C P CP D I+
Sbjct: 109 AWIDESNCIGC--TKCIQACPVDAIVGSTRAIHTVISDLCTGCDLCIPPCPTDCIE 162


>gi|258405327|ref|YP_003198069.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797554|gb|ACV68491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 345

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    CV+ C  D      + + I   EC+ C +C   CP  AI+ +    L   
Sbjct: 189 DACQACG--ACVDACWFDLPRIENDCVVIDSPECMRCPICSTTCPEGAIRLENREKLAQG 246

Query: 67  LKINSE 72
           L + ++
Sbjct: 247 LAVAAK 252



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 33  LAIHPDECIDCGVCEPEC 50
           L I  D C  CG C   C
Sbjct: 184 LVIDEDACQACGACVDAC 201


>gi|289207245|ref|YP_003459311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
 gi|288942876|gb|ADC70575.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. K90mix]
          Length = 243

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCP    Y  E +  + +  D+CI C  C   CP    + D E
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRESDGIVLVDYDKCIGCKYCSWACPYGVREVDAE 126


>gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
 gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
          Length = 629

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDC-------FYEGENF---LAIHPDECIDCGVCEPECP 51
           NCI C  + C + CPVD        F   E+       H D CI+CGVC   CP
Sbjct: 378 NCIRC--SSCSDACPVDLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP 429


>gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 590

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V + C+ C    C + CPVD    E      +  ++C  C  C   C   AI+
Sbjct: 539 IVEDKCVKCG--ACKKACPVDAIVWEKGQIAYLDKEKCTKCKSCYDACRFMAIE 590



 Score = 40.5 bits (94), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPD 58
           I  D+C+ CG C+  CPVDAI  +
Sbjct: 539 IVEDKCVKCGACKKACPVDAIVWE 562


>gi|77465040|ref|YP_354543.1| RdxA, iron-sulfur cluster-binding protein [Rhodobacter sphaeroides
           2.4.1]
 gi|548712|sp|Q01854|RDXA_RHOS4 RecName: Full=Protein rdxA
 gi|151927|gb|AAA26117.1| 52 kDa protein [Rhodobacter sphaeroides]
 gi|77389458|gb|ABA80642.1| RdxA, iron-sulfur cluster-binding protein [Rhodobacter sphaeroides
           2.4.1]
          Length = 469

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP+     EG+         CI CG+C   C
Sbjct: 250 DCIDC--MACVNVCPMGIDIREGQQM------ACITCGLCIDAC 285


>gi|301058314|ref|ZP_07199347.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300447550|gb|EFK11282.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 1130

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 4    VVTENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPD 58
            V  E C  C    C+E+CP        N        +    C  CG C   CP +A   D
Sbjct: 1057 VDEERCRGCG--RCIEICPYRAVSFHPNGVGGWHAVVDEALCKGCGNCISVCPSNA--AD 1112

Query: 59   TEPGLELWLK 68
            +    + +L+
Sbjct: 1113 SPYRNQEYLE 1122



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPD--TEPGLELWLKINSEYATQWPNITTKKESL 87
            +  ++C+ CG C   CPV  I PD  T         +        P I  +KE  
Sbjct: 105 YVDTEQCVLCGRCAAVCPV--ITPDALTPVQFGGRHAL-----PGRPVILKRKEPP 153


>gi|220927199|ref|YP_002502501.1| cytochrome c oxidase accessory protein CcoG [Methylobacterium
           nodulans ORS 2060]
 gi|219951806|gb|ACL62198.1| cytochrome c oxidase accessory protein CcoG [Methylobacterium
           nodulans ORS 2060]
          Length = 496

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 18/67 (26%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +C+ C    CV VCP      EG          CI CG+C   C         P   I  
Sbjct: 287 DCVDC--RQCVVVCPTGVDIREGLQMP------CIQCGLCVDACNAVMTKLGRPTGLIAY 338

Query: 58  DTEPGLE 64
           DTE   E
Sbjct: 339 DTEANCE 345


>gi|145592563|ref|YP_001154565.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum arsenaticum DSM 13514]
 gi|145284331|gb|ABP51913.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum arsenaticum DSM 13514]
          Length = 96

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E C  C+   C  +CP  C+ +  +++ +  + C++CG C   CP   I+ +  
Sbjct: 32 ERCKKCEKKPCTYMCPAKCYVQQGDYIVLSTEACVECGTCRVVCPHGNIEWNYP 85


>gi|145541694|ref|XP_001456535.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424347|emb|CAK89138.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP      E E             I   +CI CG C+  CPVDAI
Sbjct: 134 ERCIACKL--CQSACPARAITIETEPRPDNSRRTVRYDIDMTKCIYCGFCQEACPVDAI 190



 Score = 38.2 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
           P+   + GE+ L  +P   + CI C +C+  CP  AI  +TEP
Sbjct: 115 PLSPLFRGEHALRRYPTGEERCIACKLCQSACPARAITIETEP 157



 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG N+  
Sbjct: 175 CIYCGF--CQEACPVDAIVEGPNYEY 198


>gi|117919516|ref|YP_868708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella sp. ANA-3]
 gi|117611848|gb|ABK47302.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          sp. ANA-3]
          Length = 83

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I P+ C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPERCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IDPD 62


>gi|325499127|gb|EGC96986.1| hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           fergusonii ECD227]
          Length = 152

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +     C  C+   C  VCPV         + +    CI C  C   CP  A++   + 
Sbjct: 46  AFTTAVACHQCEDAPCANVCPVQAIRRERGHIFVEQSRCIGCKSCMLACPFGAMRVVAQE 105

Query: 62  GLELWLKIN 70
                +K +
Sbjct: 106 SQVQAIKCD 114


>gi|301062305|ref|ZP_07202971.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta
           proteobacterium NaphS2]
 gi|300443605|gb|EFK07704.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta
           proteobacterium NaphS2]
          Length = 276

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 5   VTENCILCKHTDCVEVCP----VDCFY--EGENFLAIHPDE--CIDCGVCEPECPVDAIK 56
           V + CI C    C+ VC     +      E +    I P E  CI CG C   CP  AI 
Sbjct: 136 VADGCIRC--RLCIRVCKEVVGIGAIKMVERDGLRLIIPREGLCIGCGTCANICPTGAIH 193

Query: 57  PDTEPG 62
              E G
Sbjct: 194 LADENG 199


>gi|326791181|ref|YP_004309002.1| electron transport complex, RnfABCDGE type subunit beta
           [Clostridium lentocellum DSM 5427]
 gi|326541945|gb|ADZ83804.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           lentocellum DSM 5427]
          Length = 285

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ C        +N   I   +C+ CG CE +CP  AI
Sbjct: 217 CIGCG--ICVKQCEEGAITLVDNHAVIEMTKCVSCGKCEAKCPTKAI 261



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  C + C        E    IHP++C+ CG C+  CP   I+
Sbjct: 145 GYGSCQKACTFGAITMEEGLPIIHPEKCVGCGACKNACPRHIIE 188


>gi|316935778|ref|YP_004110760.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris
           DX-1]
 gi|315603492|gb|ADU46027.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           DX-1]
          Length = 173

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCPV C                   ++   CI CG CE  CP  AI+
Sbjct: 51  ERCVACNL--CATVCPVGCIDLSKAVADDGRWYPEHFRVNFARCIFCGFCEDACPTAAIQ 108

Query: 57  PDTEPGLELW 66
              +  L  W
Sbjct: 109 LTPDYELSEW 118


>gi|260597798|ref|YP_003210369.1| electron transport complex protein RnfB [Cronobacter turicensis
           z3032]
 gi|260216975|emb|CBA30620.1| Electron transport complex protein rnfB [Cronobacter turicensis
           z3032]
          Length = 171

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           M  V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CP   I+
Sbjct: 87  MLAVIDEPNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCIE 142


>gi|257464839|ref|ZP_05629210.1| nitrate reductase, Fe-S protein [Actinobacillus minor 202]
 gi|257450499|gb|EEV24542.1| nitrate reductase, Fe-S protein [Actinobacillus minor 202]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCSNAPCVSVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|239905007|ref|YP_002951746.1| Hme subunit A [Desulfovibrio magneticus RS-1]
 gi|239794871|dbj|BAH73860.1| Hme subunit A [Desulfovibrio magneticus RS-1]
          Length = 258

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C+   CV+VCP    ++  + +  +    CI C  C   CP  A
Sbjct: 121 CNQCEAPMCVKVCPTQATFQRPDGIVMMDFHRCIGCRYCMAGCPFGA 167


>gi|222111964|ref|YP_002554228.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|221731408|gb|ACM34228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 687

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
                  CV++C  +          + ++P  C+ CG C   CP  A+        +
Sbjct: 304 RGVGCNACVDICSAEAISSDPVRQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQD 360



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 556 DRCTLCL--SCVSACPAGALQDNPQAPQLRFTEQNCVQCGLCERTCPENAI 604



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + +  D C  C  C   CP  A++ + +     + + N
Sbjct: 551 VVVDKDRCTLCLSCVSACPAGALQDNPQAPQLRFTEQN 588



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           + C  C    CV  CP +          I    C     C   C V  AI+ + E  ++
Sbjct: 183 DLCTRCN--ACVTACPENAIGLD---YQIDMTACTGHRDCVKACAVAGAIRFEREAEVQ 236



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP +AI  D +  +
Sbjct: 180 IDLDLCTRCNACVTACPENAIGLDYQIDM 208


>gi|167580299|ref|ZP_02373173.1| ferredoxin [Burkholderia thailandensis TXDOH]
          Length = 177

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  I  + C  C +C P CPVD I
Sbjct: 85  QLCIGC--TLCMQACPVDAIVGAPKQMHTIVAELCTGCDLCVPPCPVDCI 132



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 82  IDEQLCIGCTLCMQACPVDAI 102


>gi|163858985|ref|YP_001633283.1| iron-sulfur cluster-binding protein [Bordetella petrii DSM 12804]
 gi|163262713|emb|CAP45016.1| iron-sulfur cluster-binding protein [Bordetella petrii]
          Length = 698

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP DAI+
Sbjct: 564 VDAQACTLC--MSCVSACPAHALQDNPQLPQLRFIEKNCVQCGLCEKTCPEDAIQ 616



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 10  ILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
           I C    CV+VC  +      +   + + P  C  CG C   CP  A
Sbjct: 314 IGCN--ACVDVCSAEAIRSDAHRQQIVVDPYLCAGCGACTTVCPSGA 358



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           I  D C  C  C   CP  AI  D +  L+
Sbjct: 191 IDLDLCTRCNACLAACPEGAIGFDYQVDLD 220



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +A+    C  C  C   CP  A++ + +     +++ N
Sbjct: 562 VAVDAQACTLCMSCVSACPAHALQDNPQLPQLRFIEKN 599


>gi|162148247|ref|YP_001602708.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161786824|emb|CAP56407.1| putative NADH-quinone oxidoreductase subunit I [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 149

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 7  ENCILCKHTDCVEVCPVDCFY------EG---ENFLAIHPDECIDCGVCEPECPVDAIKP 57
          E C+ C    C   CPVDC        +G    ++  I+   CI CG CE  CP  AI+ 
Sbjct: 28 ERCVACGL--CAVACPVDCISLQKTEQDGRWYPDYFRINFSRCIFCGFCEEACPTYAIQL 85

Query: 58 DTEPGLELWL 67
            +  +  ++
Sbjct: 86 TPDFEMSEYV 95


>gi|110598041|ref|ZP_01386320.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans
          DSM 13031]
 gi|110340300|gb|EAT58794.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans
          DSM 13031]
          Length = 62

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV     G++   I    C +C        C   CP DA
Sbjct: 1  MALYITEECTYCG--ACEPECPVTAISAGDDLYVIDAATCTECSGYSDSPSCAAVCPSDA 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          +EC  CG CEPECPV AI    +
Sbjct: 7  EECTYCGACEPECPVTAISAGDD 29


>gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila
          LSv54]
 gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea
          psychrophila LSv54]
          Length = 471

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPEC 50
          E C  C    C EVCPV       N    I  D CI CG C   C
Sbjct: 23 ELCTGCG--RCKEVCPVGAISGRLNRAHQIDTDACIFCGQCVQIC 65



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 25 CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
               +  ++I  + C  CG C+  CPV AI
Sbjct: 10 AIIMTKAIISIDQELCTGCGRCKEVCPVGAI 40


>gi|303328518|ref|ZP_07358954.1| nitroreductase family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861349|gb|EFL84287.1| nitroreductase family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 276

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          M + V  + C+ C    C E C        + +  I + D C+ C  C   CPV AI
Sbjct: 1  MQFTVDKDRCVSCG--ACAEDCLPQAIQMRDQYPVIPNEDICMRCLHCLAVCPVGAI 55



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
             +  D C+ CG C  +C   AI+
Sbjct: 2  QFTVDKDRCVSCGACAEDCLPQAIQ 26


>gi|225017724|ref|ZP_03706916.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum
           DSM 5476]
 gi|224949517|gb|EEG30726.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum
           DSM 5476]
          Length = 263

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T  CI C    C + CP D  +       I  ++C  CG C   CPV  I 
Sbjct: 212 TNGCIGC--RKCEKTCPYDAIHVDNFLARIDYEKCTACGKCVEVCPVSCIH 260



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + DC   C  D  +  +    + P++C  CG C  ECP   I
Sbjct: 143 GYGDCTHACIFDALHVIDGVAYVDPEKCTGCGQCAQECPKGLI 185



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 25/73 (34%), Gaps = 18/73 (24%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----------------YEGENFLAIHPDECIDCGV 45
            YV  E C  C    C + CP                      G+N  A   + CI C  
Sbjct: 163 AYVDPEKCTGCGQ--CAQECPKGLIDIKPLSKPVVVICASQQNGKNTRAACTNGCIGCRK 220

Query: 46  CEPECPVDAIKPD 58
           CE  CP DAI  D
Sbjct: 221 CEKTCPYDAIHVD 233


>gi|168185418|ref|ZP_02620053.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum C str. Eklund]
 gi|169296260|gb|EDS78393.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum C str. Eklund]
          Length = 285

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C +VC  D     +    I+P  C  CG C   CP +AI    E   E++
Sbjct: 65  ELCKNCG--KCKKVCRFDAISNNK----INPYSCEGCGTCILVCPSNAITLKEEKSAEIY 118

Query: 67  L 67
           +
Sbjct: 119 I 119



 Score = 33.6 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G     I+ + C +CG C+  C  DAI
Sbjct: 56 GGKIAEINEELCKNCGKCKKVCRFDAI 82


>gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydrogenase subunit alpha Fdh1A
           [Herminiimonas arsenicoxydans]
 gi|133737539|emb|CAL60582.1| Formate dehydrogenase, alpha subunit [Herminiimonas arsenicoxydans]
          Length = 946

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVD--------CFYEGENFLAIHPD------ECIDCGVC 46
           MT V  + CI C  T CV  C  +         F      +    D       C+ CG C
Sbjct: 149 MT-VNLDACIQC--TRCVRACRDEQENDVIGLAFRGDHAKIVFDMDDPMGASTCVACGEC 205

Query: 47  EPECPVDAIKPDTEPGL 63
              CP  A+ P  + G+
Sbjct: 206 VQACPTGALMPARDVGM 222


>gi|257076285|ref|ZP_05570646.1| putative ATPase RIL [Ferroplasma acidarmanus fer1]
          Length = 590

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 17/73 (23%)

Query: 12 CKHTDCVEVCPVDCF------------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          C    C   C   C              + ++F  I    CI CG+C   CP  AIK  +
Sbjct: 11 CHPKKCNHECRYYCPPVRSGAKTIEFPGQSDDFPVITESLCIGCGICVNRCPFGAIKIVS 70

Query: 60 EPGLELWLKINSE 72
           P      ++N +
Sbjct: 71 VPD-----ELNKD 78


>gi|94984496|ref|YP_603860.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
           DSM 11300]
 gi|94554777|gb|ABF44691.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
           geothermalis DSM 11300]
          Length = 334

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V + CI C    C  VCP          EG   L ++   C  C  C   CP  AI    
Sbjct: 257 VDDTCIDC--PVCANVCPTQAITREQKPEGGVQLLLNLSACTGCRACLRSCPPQAIHM-- 312

Query: 60  EPGLELWLK 68
               E WL 
Sbjct: 313 ---QEEWLA 318



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 16 DCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C   CP +    G    +I   P  C  CG+C   CP  A++ D    L+
Sbjct: 36 ACHATCPHEAIAFGPLGQSIQLDPQRCTGCGLCVQVCPSGALEYDLTASLQ 86



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           D CIDC VC   CP  AI  + +P   + L +N
Sbjct: 259 DTCIDCPVCANVCPTQAITREQKPEGGVQLLLN 291


>gi|255021484|ref|ZP_05293529.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969067|gb|EET26584.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
          Length = 230

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C++ +CV VCP    +   E+ +  +   +C+ C  C   CP  A + D
Sbjct: 71  SCMHCENAECVTVCPTGASYKRAEDGIVLVDQSKCMGCNYCSWACPYGARELD 123


>gi|240948947|ref|ZP_04753303.1| nitrate reductase, Fe-S protein [Actinobacillus minor NM305]
 gi|240296762|gb|EER47373.1| nitrate reductase, Fe-S protein [Actinobacillus minor NM305]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCSNAPCVSVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|291286169|ref|YP_003502985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883329|gb|ADD67029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 259

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E CI+C    C + CP       E   + +PD CI C  C   CP  A   DT  
Sbjct: 186 EKCIICG--ACKKACPTGAMIIAEKVTS-NPDLCIMCMACAKVCPRKARYIDTPQ 237



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 36  HPDECIDCGVCEPECPVDA 54
             ++CI CG C+  CP  A
Sbjct: 184 DDEKCIICGACKKACPTGA 202


>gi|224368525|ref|YP_002602688.1| putative iron-sulfur cluster-binding protein [Desulfobacterium
          autotrophicum HRM2]
 gi|223691241|gb|ACN14524.1| putative iron-sulfur cluster-binding protein [Desulfobacterium
          autotrophicum HRM2]
          Length = 181

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVD 53
          Y V   C  C +  C+  CP     + E   +AI  ++C +CG C   CP  
Sbjct: 47 YSVQSICFQCPNAACMNACPEGAIIKNERGVIAIDINKCTECGECVEACPYG 98


>gi|254454656|ref|ZP_05068093.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus
           238]
 gi|198269062|gb|EDY93332.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus
           238]
          Length = 164

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAVCPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAVCPAQAITIDAEPRDD 89



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|121535572|ref|ZP_01667379.1| hydrogenase large subunit domain protein [Thermosinus
          carboxydivorans Nor1]
 gi|121305812|gb|EAX46747.1| hydrogenase large subunit domain protein [Thermosinus
          carboxydivorans Nor1]
          Length = 561

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 8  NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    CV VCP+       G+  L    D+CI CG C  ECP  A
Sbjct: 10 NCKDC--HRCVRVCPIKAIGIRRGQARLV--DDKCILCGKCVVECPQQA 54


>gi|145589679|ref|YP_001156276.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048085|gb|ABP34712.1| electron transport complex, RnfABCDGE type, B subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 230

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDEC-IDCGVCEPECPVDAI 55
            ++  + CI C  T C++ CPVD        + +  D C   C +C P CPVD I
Sbjct: 90  AFIDPQKCIGC--TLCIQACPVDAIIGASKQMHVVLDACCTGCDLCIPPCPVDCI 142



 Score = 41.7 bits (97), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 24  DCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           +C  E    +  I P +CI C +C   CPVDAI
Sbjct: 80  ECGEERPRAVAFIDPQKCIGCTLCIQACPVDAI 112


>gi|126464494|ref|YP_001045607.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126106305|gb|ABN78835.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 469

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP+     EG+         CI CG+C   C
Sbjct: 250 DCIDC--MACVNVCPMGIDIREGQQM------ACITCGLCIDAC 285


>gi|313898502|ref|ZP_07832039.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956884|gb|EFR38515.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 257

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    C + CP       +    I   ECI CG C   CP  A+
Sbjct: 13 CIGCGQ--CAKDCPTSNIQLKDKKAEILEAECIMCGHCAAICPKKAV 57



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          I+P  CI CG C  +CP   I+   +   
Sbjct: 8  INPSLCIGCGQCAKDCPTSNIQLKDKKAE 36


>gi|291543742|emb|CBL16851.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus sp. 18P13]
          Length = 593

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           V    C+ CK   C+    CP            I PD C  C +C   C   AI+ + 
Sbjct: 538 VDESRCVGCKQ--CIRELGCP--AISLKGQKAYIEPDLCFGCTICAQVCKPGAIREED 591


>gi|317052552|ref|YP_004113668.1| nitroreductase [Desulfurispirillum indicum S5]
 gi|316947636|gb|ADU67112.1| nitroreductase [Desulfurispirillum indicum S5]
          Length = 261

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------CIDCGVCEPECPVD 53
          M  V ++ C   +   CV VCPV   ++ E      P         CI CG C   CP D
Sbjct: 1  MLQVDSQRCR--RDGHCVSVCPVAIIHQDEQGY---PCAREDRAGLCIACGHCVAVCPHD 55

Query: 54 AIKPDTEPGL 63
          A++ +  P  
Sbjct: 56 ALRHEGLPDE 65


>gi|312116276|ref|YP_004013872.1| glycyl-radical enzyme activating protein family [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221405|gb|ADP72773.1| glycyl-radical enzyme activating protein family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 304

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CVE CP D      + L      C  CG+C   CP DA
Sbjct: 60  CTQCG--ICVEECPNDALAIAGDELRRDEAACKLCGLCVSVCPQDA 103


>gi|304317042|ref|YP_003852187.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778544|gb|ADL69103.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 290

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  C    C +VC V      +N      D+CI CG C   CP+DA
Sbjct: 166 DLCTGCGL--CADVCDVKAITIKDNLARRDDDKCIYCGSCIRVCPMDA 211



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP +C         ++G+    +  D C  CG+C   C V AI
Sbjct: 138 ISGCPNNCTKPQFNDIGFQGQVEPELSEDLCTGCGLCADVCDVKAI 183


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C+ C  T C  VCPVDC   E +    I    CI CG C   C   A+
Sbjct: 565 AEKCVGC--TRCARVCPVDCISGEVKKPHLIDQRGCIRCGECLKACNFAAV 613



 Score = 41.7 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)

Query: 12  CKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C    C E VC            +I  ++C+ C  C   CPVD I  + +   
Sbjct: 550 CPALRCAELVC-----------YSIDAEKCVGCTRCARVCPVDCISGEVKKPH 591


>gi|169837543|ref|ZP_02870731.1| electron transport complex protein RnfC [candidate division TM7
           single-cell isolate TM7a]
          Length = 501

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPV--------DCFYEG--ENFLAIHPDECIDCGVCEPECP 51
           +CI C +  CVE CP+        D +  G  E     +   CI+CG CE  CP
Sbjct: 186 SCISCGY--CVEACPMNLMPFEFADYYKNGKYEKMATANIQNCIECGACEFVCP 237



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 31  NFLAIHPDECIDCGVCEPECPVD 53
           +   I    CI CG C   CP++
Sbjct: 178 DTEEIERKSCISCGYCVEACPMN 200


>gi|160884258|ref|ZP_02065261.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483]
 gi|237719500|ref|ZP_04549981.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|156109997|gb|EDO11742.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483]
 gi|229451360|gb|EEO57151.1| ferredoxin [Bacteroides sp. 2_2_4]
          Length = 317

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T +CI C    CV+ CP +      N   I P +C  C  C   CP + I
Sbjct: 218 TVSCIGCG--KCVKTCPFEAITLENNLAYIDPHKCKSCRKCVEVCPQNTI 265



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  C  D  +         +   +C  CG C   CP   I+
Sbjct: 142 CLGCGD--CVAACQFDAIHMNPETGLPEVDEAKCTACGACVKACPKAIIE 189


>gi|34499656|ref|NP_903871.1| ferredoxin [4Fe-4S [Chromobacterium violaceum ATCC 12472]
 gi|34105506|gb|AAQ61861.1| ferredoxin [4Fe-4S [Chromobacterium violaceum ATCC 12472]
          Length = 83

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP +   +GE    I P+ C  C        C+  CPVD 
Sbjct: 1  MSLMITDECINCDV--CEPECPNNAISQGEEIYQIDPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDTEPGLELWLKINSEY 73
          I P      E   +++ +Y
Sbjct: 59 I-PLDPAHEETQEELHQKY 76


>gi|84624027|ref|YP_451399.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367967|dbj|BAE69125.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 94

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +   C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINALCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVLVCPVEC 58

Query: 55 IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  K+   P
Sbjct: 59 IDPDPAIPETHDQLLAKLMQLQRDHPELYEKEPPAP 94


>gi|284049120|ref|YP_003399459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953341|gb|ADB48144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 375

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           V  E C  C    C + C  D    GEN    I  ++C  CG C   C  DAI+
Sbjct: 192 VDEELCRGCG--RCAKECGSDAISYGENHKAHIDEEKCAGCGRCIGACGFDAIQ 243


>gi|269216343|ref|ZP_06160197.1| protein AegA [Slackia exigua ATCC 700122]
 gi|269130602|gb|EEZ61680.1| protein AegA [Slackia exigua ATCC 700122]
          Length = 207

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C    CV  CP    Y   + +A+  + CI C  C   CP  A
Sbjct: 77  ACHHCVDAPCVNACPQGALYYDGDRVAVSMERCIGCRSCVMACPYGA 123


>gi|269216341|ref|ZP_06160195.1| hydrogenase-4 component A [Slackia exigua ATCC 700122]
 gi|269130600|gb|EEZ61678.1| hydrogenase-4 component A [Slackia exigua ATCC 700122]
          Length = 137

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 18 VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          ++VCPV         + I+   C+ C +C   CP  AI P
Sbjct: 1  MQVCPVRAITNENGSIHINEQTCVGCKMCAVVCPFGAIHP 40


>gi|256821523|ref|YP_003145486.1| NADH dehydrogenase subunit I [Kangiella koreensis DSM 16069]
 gi|256795062|gb|ACV25718.1| NADH-quinone oxidoreductase, chain I [Kangiella koreensis DSM
           16069]
          Length = 163

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        G              I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAAAITIEAGPRESDGTRRTTRYEIDMFKCIYCGFCEESCPVDSI 118



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAVCPAAAITIEAGP 84


>gi|257790944|ref|YP_003181550.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474841|gb|ACV55161.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 191

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGL 63
           T +C  C    CV  CP    ++ ++    H  D C+ C  C   CP  A + D +  +
Sbjct: 55  TVSCNHCDDPACVAGCPTGAMFKSDDGTVQHVDDCCVVCRNCMITCPYGAPQFDEDENM 113


>gi|291288024|ref|YP_003504840.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885184|gb|ADD68884.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 251

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAIHPDE-CIDCGVCEPECPV 52
           C  C +  CV+ CPV     ++ E+ + +H DE CI C  C+  CP 
Sbjct: 63  CNHCTNAACVDACPVTPKAMFKTEDGITMHNDERCIGCRSCQDACPY 109


>gi|225175931|ref|ZP_03729923.1| sigma54 specific transcriptional regulator, Fis family
          [Dethiobacter alkaliphilus AHT 1]
 gi|225168519|gb|EEG77321.1| sigma54 specific transcriptional regulator, Fis family
          [Dethiobacter alkaliphilus AHT 1]
          Length = 739

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 1  MTYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IK 56
          M  V TE+  C  C    CV  CPV      +   ++    CI CG C+  C   A  I+
Sbjct: 1  MPVVRTESNLCKRC--YACVRNCPVKAIKVEDGQASVTEASCITCGACKNVCSQQAKQIR 58

Query: 57 PDTE 60
           D +
Sbjct: 59 RDVD 62


>gi|187935770|ref|YP_001887225.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund
           17B]
 gi|187723923|gb|ACD25144.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund
           17B]
          Length = 320

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV  C    VD        +  + ++CI CG C   CP  A
Sbjct: 170 DRCVSCG--ACVRACKKKSVDALKAVNYKIVRNEEKCIGCGECVINCPTGA 218



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 8/38 (21%)

Query: 21  CPVDCFYEGENFLAI--------HPDECIDCGVCEPEC 50
           CP DC     +   I          D C+ CG C   C
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYDKDRCVSCGACVRAC 182


>gi|21673330|ref|NP_661395.1| polysulfide reductase, subunit B, putative [Chlorobium tepidum TLS]
 gi|21646423|gb|AAM71737.1| polysulfide reductase, subunit B, putative [Chlorobium tepidum TLS]
          Length = 199

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C++T C+  CP    +  ++ +  ++ D CI C  C   CP DA        ++   
Sbjct: 60  CMHCENTPCLSACPTGATHMNKDGIVLVNYDRCIGCYACCIACPYDARYAYDSEDVQKER 119

Query: 68  KI 69
           ++
Sbjct: 120 EL 121


>gi|83312641|ref|YP_422905.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
 gi|82947482|dbj|BAE52346.1| Fe-S-cluster-containing hydrogenase components 1 [Magnetospirillum
           magneticum AMB-1]
          Length = 245

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C+   CV VCP    Y  E +  + +  D+CI C  C   CP  A + D
Sbjct: 74  SCLHCEEPPCVPVCPTGASYKREEDGIVLVDYDKCIGCKYCSWSCPYGAREFD 126


>gi|148262563|ref|YP_001229269.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Geobacter uraniireducens Rf4]
 gi|146396063|gb|ABQ24696.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
          uraniireducens Rf4]
          Length = 96

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPD 58
           CI C    CVEVCP   F   E    I   D C++CG C   CP  AIK D
Sbjct: 19 ACIGCG--RCVEVCPHKVFSLAEKRSRIVDFDGCMECGACAKNCPTAAIKVD 68


>gi|322833148|ref|YP_004213175.1| nitrate reductase, subunit beta [Rahnella sp. Y9602]
 gi|321168349|gb|ADW74048.1| nitrate reductase, beta subunit [Rahnella sp. Y9602]
          Length = 511

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           M Y +   C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  +
Sbjct: 176 MAY-LPRLCEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFN 234

Query: 59  TEPG 62
            + G
Sbjct: 235 WKSG 238


>gi|303247145|ref|ZP_07333420.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
 gi|302491571|gb|EFL51456.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
          Length = 651

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 2   TYVVTENCILCKHT-DCVEVC---------PVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            +V   +   CK T  CV  C         P+D   E  N   + P  C+ CG C   CP
Sbjct: 547 PFVAEVDLARCKGTGACVSACLNEGALRLVPMDVGGETVNRAQVTPALCLGCGACVAVCP 606

Query: 52  VDAI 55
            +AI
Sbjct: 607 ENAI 610


>gi|304312247|ref|YP_003811845.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
 gi|301797980|emb|CBL46202.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
          Length = 175

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCP  C    +GE         F  I+   CI CG+CE  CP  AI+
Sbjct: 53  ERCVACNL--CASVCPPACISLQKGEREDGRWYPVFFRINFSRCIMCGMCEEACPTYAIQ 110

Query: 57  PDTEPGLELWL 67
              +  +  ++
Sbjct: 111 LTPDFEMGEYV 121


>gi|299530179|ref|ZP_07043605.1| Mbh14 iron-sulfur protein [Comamonas testosteroni S44]
 gi|298721836|gb|EFI62767.1| Mbh14 iron-sulfur protein [Comamonas testosteroni S44]
          Length = 430

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV+VCPV               ECI CG+C   C
Sbjct: 223 DCIDCKL--CVQVCPVGIDIRKGLQY-----ECIGCGLCIDAC 258



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 224 CIDCKLCVQVCPVG 237


>gi|264677950|ref|YP_003277857.1| Mbh14 iron-sulfur protein [Comamonas testosteroni CNB-2]
 gi|262208463|gb|ACY32561.1| Mbh14 iron-sulfur protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV+VCPV               ECI CG+C   C
Sbjct: 246 DCIDCKL--CVQVCPVGIDIRKGLQY-----ECIGCGLCIDAC 281



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 247 CIDCKLCVQVCPVG 260


>gi|239941995|ref|ZP_04693932.1| putative 4Fe-4S cluster-binding protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239988459|ref|ZP_04709123.1| putative 4Fe-4S cluster-binding protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291445444|ref|ZP_06584834.1| 4Fe-4S ferredoxin [Streptomyces roseosporus NRRL 15998]
 gi|291348391|gb|EFE75295.1| 4Fe-4S ferredoxin [Streptomyces roseosporus NRRL 15998]
          Length = 199

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 9   CILCKH--TDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C+     C EVCP D      + +    D   CI C  C   CP    K D +  L+
Sbjct: 52  CMHCEDPVAPCAEVCPADAILVTADGVVQQADTTRCIGCSNCVNACPFGVPKIDLQAKLQ 111


>gi|255089569|ref|XP_002506706.1| predicted protein [Micromonas sp. RCC299]
 gi|226521979|gb|ACO67964.1| predicted protein [Micromonas sp. RCC299]
          Length = 614

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CF-YEGENFL-AIHPDECIDCGVCEPECPVDA 54
          V  + C    CK  +C + CPV      C    G + L  I  D CI CG+C  +CP +A
Sbjct: 22 VSADRCRPKKCK-QECKKSCPVVKVGKLCIEVSGSSKLAYISEDLCIGCGICVKKCPFEA 80

Query: 55 IK 56
          ++
Sbjct: 81 VQ 82


>gi|221369007|ref|YP_002520103.1| Protein rdxA [Rhodobacter sphaeroides KD131]
 gi|221162059|gb|ACM03030.1| Protein rdxA [Rhodobacter sphaeroides KD131]
          Length = 502

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP+     EG+         CI CG+C   C
Sbjct: 283 DCIDC--MACVNVCPMGIDIREGQQM------ACITCGLCIDAC 318


>gi|168184888|ref|ZP_02619552.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Bf]
 gi|182672047|gb|EDT84008.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          Bf]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|221067715|ref|ZP_03543820.1| cytochrome c oxidase accessory protein CcoG [Comamonas testosteroni
           KF-1]
 gi|220712738|gb|EED68106.1| cytochrome c oxidase accessory protein CcoG [Comamonas testosteroni
           KF-1]
          Length = 480

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV+VCPV               ECI CG+C   C
Sbjct: 273 DCIDCKL--CVQVCPVGIDIRKGLQY-----ECIGCGLCIDAC 308



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 274 CIDCKLCVQVCPVG 287


>gi|294677068|ref|YP_003577683.1| NADH-quinone oxidoreductase subunit I [Rhodobacter capsulatus SB
           1003]
 gi|1171863|sp|P42031|NUOI_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|3282573|gb|AAC24999.1| NUOI [Rhodobacter capsulatus]
 gi|294475888|gb|ADE85276.1| NADH-quinone oxidoreductase, I subunit [Rhodobacter capsulatus SB
           1003]
 gi|1586522|prf||2204231C NADH ubiquinone oxidoreductase
          Length = 163

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGYCQEACPVDAI 118



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 62 ERCIACKLCEAICPAQAITIDAEPRDD 88



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C +  C E CPVD   EG NF  
Sbjct: 103 CIYCGY--CQEACPVDAIVEGPNFEY 126


>gi|254226570|ref|ZP_04920152.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
 gi|125620906|gb|EAZ49258.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
          Length = 553

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|332185682|ref|ZP_08387429.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas
           sp. S17]
 gi|332014040|gb|EGI56098.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas
           sp. S17]
          Length = 161

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 116



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
          P+   + GE+ L  +P   + CI C +CE  CP  AI  + EP  +
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEPRDD 86



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 101 CIYCGL--CQEACPVDAIVEGPNF 122


>gi|319943356|ref|ZP_08017638.1| NADH-quinone oxidoreductase subunit I [Lautropia mirabilis ATCC
           51599]
 gi|319743171|gb|EFV95576.1| NADH-quinone oxidoreductase subunit I [Lautropia mirabilis ATCC
           51599]
          Length = 162

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G+       I   +CI CG+CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESAVRADGQRRTTRYDIDLTKCIFCGLCEESCPVDSI 117



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          + CI C +CE  CP  AI  ++
Sbjct: 61 ERCIACKLCEAVCPAMAITIES 82


>gi|307822808|ref|ZP_07653039.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum
           SV96]
 gi|307736412|gb|EFO07258.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum
           SV96]
          Length = 171

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E EN      F  I+   CI CG CE  CP +AI+
Sbjct: 49  ERCVACNL--CAVACPVDCIVLQKAEDENGRWYPEFFRINFSRCIMCGFCEEACPTNAIQ 106


>gi|294341084|emb|CAZ89481.1| Respiratory nitrate reductase 1 beta chain (Nitrate reductase A
           subunit beta) (Quinol-nitrate oxidoreductase subunit
           beta) [Thiomonas sp. 3As]
          Length = 507

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + E G
Sbjct: 183 CEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWRMCISACPYKKIYYNWESG 238


>gi|317129633|ref|YP_004095915.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474581|gb|ADU31184.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 180

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ CK   C  VCP +     ++ + +    ++CI C  C   CP    K D E  
Sbjct: 52  CMQCKDPACARVCPANAIQITDDGVVLSAMEEKCIGCRNCTFGCPFGIPKFDFEEN 107


>gi|260768415|ref|ZP_05877349.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
 gi|260616445|gb|EEX41630.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
          Length = 553

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  D CV+ CP      EG       + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCDRCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATSCPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 HYALPNPTETQKFIE 247



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGE-NFLAIHPDECIDCGVCEPECPVDA 54
           T +C LC    CV VCP    + EG+   L     +C+ CG+C   CP +A
Sbjct: 417 TTDCTLC--MSCVAVCPTRALHHEGDLPSLKFVEQDCVQCGLCVKACPENA 465



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDTDLCAHSSRGVKGCDRCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|229578417|ref|YP_002836815.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.G.57.14]
 gi|229582865|ref|YP_002841264.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.N.15.51]
 gi|228009131|gb|ACP44893.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.G.57.14]
 gi|228013581|gb|ACP49342.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.N.15.51]
          Length = 612

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C        CP       +    I    CI CG C P CP  AI
Sbjct: 549 EICTGCSICYDYFTCPA-IIPRKDKKAEIDNYTCIGCGACIPVCPFKAI 596


>gi|158520470|ref|YP_001528340.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509296|gb|ABW66263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 277

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C++  CV  CP    ++ E+ +  +    CI C  C   CP  +   +     E   
Sbjct: 140 CNHCENPPCVRACPTKATFQREDGIVMMDFHRCIGCRFCMAACPYGSRSFNFRDPREGLK 199

Query: 68  KINSEYATQWPNITTKK 84
           + N  + T+   +  K 
Sbjct: 200 ETNIAFPTRMKGVVEKC 216


>gi|90408833|ref|ZP_01216975.1| iron-sulfur cluster-binding protein [Psychromonas sp. CNPT3]
 gi|90310060|gb|EAS38203.1| iron-sulfur cluster-binding protein [Psychromonas sp. CNPT3]
          Length = 467

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +C+ C    CV+VCP      EG  +      ECI+CG C   C    +K     GL  +
Sbjct: 266 DCVDCDL--CVQVCPTGIDIREGLQY------ECINCGACIDACDATMLKMGYPKGLISY 317

Query: 67  LKINSEYATQWPNITTK 83
              N     +   +  K
Sbjct: 318 TSENKLAGEKTKVLRPK 334


>gi|89899039|ref|YP_521510.1| FAD/NAD(P)-binding oxidoreductase [Rhodoferax ferrireducens T118]
 gi|89343776|gb|ABD67979.1| benzoyl-CoA oxygenase, component A [Rhodoferax ferrireducens
          T118]
          Length = 423

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C  +CPV           +  D+C  C  C   CP  +I
Sbjct: 17 EICIRCN--TCEAICPVAAITHDTRNYVVDADKCNLCMDCISPCPTGSI 63



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  DT 
Sbjct: 14 IDPEICIRCNTCEAICPVAAITHDTR 39


>gi|330911477|gb|EGH39987.1| nrfC-like protein [Escherichia coli AA86]
          Length = 184

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|330829802|ref|YP_004392754.1| Electron transport protein [Aeromonas veronii B565]
 gi|328804938|gb|AEB50137.1| Electron transport protein [Aeromonas veronii B565]
          Length = 199

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP +     +  + +  + CI C  C   CP  A
Sbjct: 75  CRQCEDKPCAMACPNNAIVSEDGCVKVLQERCIGCKSCVVACPYGA 120


>gi|324017281|gb|EGB86500.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
          Length = 143

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMITIQSLPGD 109


>gi|319776679|ref|YP_004139167.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae F3047]
 gi|329124198|ref|ZP_08252745.1| thiosulfate reductase electron transporter phsb [Haemophilus
           aegyptius ATCC 11116]
 gi|317451270|emb|CBY87504.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae F3047]
 gi|327467623|gb|EGF13121.1| thiosulfate reductase electron transporter phsb [Haemophilus
           aegyptius ATCC 11116]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 139


>gi|315500418|ref|YP_004089221.1| cytochrome c oxidase accessory protein ccog [Asticcacaulis
           excentricus CB 48]
 gi|315418430|gb|ADU15070.1| cytochrome c oxidase accessory protein CcoG [Asticcacaulis
           excentricus CB 48]
          Length = 486

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 18/70 (25%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           CI C    CV VCP+     +G         +CI CG+C   C         P   I+ D
Sbjct: 253 CIDCD--SCVIVCPMGIDIRDGLQM------QCISCGLCIDACNSVMDKIDLPRGLIRYD 304

Query: 59  TEPGLELWLK 68
           TE       +
Sbjct: 305 TESNQRQRRE 314


>gi|218548776|ref|YP_002382567.1| electron transport complex protein RnfB [Escherichia fergusonii
           ATCC 35469]
 gi|226735420|sp|B7LQP2|RNFB_ESCF3 RecName: Full=Electron transport complex protein rnfB
 gi|218356317|emb|CAQ88935.1| putative iron-sulfur protein [Escherichia fergusonii ATCC 35469]
 gi|324113402|gb|EGC07377.1| electron transporter [Escherichia fergusonii B253]
          Length = 192

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK----P 57
           V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I      
Sbjct: 111 VIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCISLQPVA 168

Query: 58  DTEPGLEL 65
           +T    + 
Sbjct: 169 ETPDSWKW 176


>gi|167377963|ref|XP_001734610.1| ABC transporter [Entamoeba dispar SAW760]
 gi|165903815|gb|EDR29244.1| ABC transporter, putative [Entamoeba dispar SAW760]
          Length = 651

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
          V+ + C    C+  +C + CP++     C      +    I    CI C +C  +CP +A
Sbjct: 16 VINDRCKPGKCR-LECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKKCPFEA 74

Query: 55 IK 56
          IK
Sbjct: 75 IK 76


>gi|68249625|ref|YP_248737.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 86-028NP]
 gi|145630156|ref|ZP_01785938.1| uridylate kinase [Haemophilus influenzae R3021]
 gi|145636484|ref|ZP_01792152.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae PittHH]
 gi|145640744|ref|ZP_01796327.1| uridylate kinase [Haemophilus influenzae R3021]
 gi|229843897|ref|ZP_04464038.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 6P18H1]
 gi|68057824|gb|AAX88077.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 86-028NP]
 gi|144984437|gb|EDJ91860.1| uridylate kinase [Haemophilus influenzae R3021]
 gi|145270309|gb|EDK10244.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae PittHH]
 gi|145274670|gb|EDK14533.1| uridylate kinase [Haemophilus influenzae 22.4-21]
 gi|229812891|gb|EEP48579.1| NrfC, Fe-S-cluster-containing hydrogenase component 1 [Haemophilus
           influenzae 6P18H1]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 139


>gi|78357317|ref|YP_388766.1| reductase, iron-sulfur binding subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219722|gb|ABB39071.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 258

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C++  CV VCP    Y+  + +  +    CI C  C   CP  A
Sbjct: 120 CNHCENPPCVRVCPTKATYKRPDGIVAMDYHRCIGCRFCMAGCPYGA 166


>gi|332754929|gb|EGJ85294.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 4343-70]
          Length = 162

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 40  ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 97

Query: 57  PDTEPGLELW 66
              +  +  +
Sbjct: 98  LTPDFEMGEY 107


>gi|329851617|ref|ZP_08266374.1| cytochrome c oxidase accessory protein CcoG [Asticcacaulis
           biprosthecum C19]
 gi|328840463|gb|EGF90035.1| cytochrome c oxidase accessory protein CcoG [Asticcacaulis
           biprosthecum C19]
          Length = 470

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 16/66 (24%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPDT 59
           CI C    CV VCP+       N L      CI CG+C   C         P   I  DT
Sbjct: 254 CIDCD--SCVVVCPMGIDIR--NGLQFD---CISCGLCIDACNTVMEKVMLPRGLIHYDT 306

Query: 60  EPGLEL 65
           E   E 
Sbjct: 307 ENNQEQ 312


>gi|319405690|emb|CBI79313.1| NADH dehydrogenase I chain I [Bartonella sp. AR 15-3]
          Length = 163

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEASPRRNDGTRRAIRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAICPAQAITIEASP 84



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|311279509|ref|YP_003941740.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cloacae SCF1]
 gi|308748704|gb|ADO48456.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cloacae SCF1]
          Length = 191

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           M  V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CP   I
Sbjct: 107 MLAVIDEPNCIGC--TKCIQACPVDAIVGATRAMHTVVSDLCTGCNLCVAPCPTQCI 161


>gi|302342321|ref|YP_003806850.1| indolepyruvate ferredoxin oxidoreductase [Desulfarculus baarsii DSM
           2075]
 gi|301638934|gb|ADK84256.1| Indolepyruvate ferredoxin oxidoreductase [Desulfarculus baarsii DSM
           2075]
          Length = 646

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 2   TYVVTENCILCKHTDC--------VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            YV++ +  +C+  +C        V  CP   F E      I    C  CGVC   CP  
Sbjct: 571 PYVMSVDQSVCRGEECGCNRFCSRVFRCPGLIFDEAAGKARIDEVVCAGCGVCAQICPAG 630

Query: 54  AIKPDTEPGLEL 65
           AIK + +     
Sbjct: 631 AIKAELKDQSRK 642


>gi|301169808|emb|CBW29412.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae 10810]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 139


>gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron
           transport complex, RnfABCDGE type, D subunit
           [Butyrivibrio fibrisolvens 16/4]
          Length = 760

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 17/66 (25%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD----------ECIDCGVCEPECP---- 51
           T  CI C    CVE CP +      +  + H D          ECI+CG C   CP    
Sbjct: 363 TTACINCG--RCVEACPENLIPSRLSKFSDHGDKEQFEKWYGLECIECGSCSYACPAKQP 420

Query: 52  -VDAIK 56
              AIK
Sbjct: 421 LAQAIK 426


>gi|256821763|ref|YP_003145726.1| cytochrome c oxidase accessory protein CcoG [Kangiella koreensis
           DSM 16069]
 gi|256795302|gb|ACV25958.1| cytochrome c oxidase accessory protein CcoG [Kangiella koreensis
           DSM 16069]
          Length = 469

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV VCP                ECI C  C   C     K   EPGL  + 
Sbjct: 265 DCIDCLQ--CVHVCPTGIDIRDGLQY-----ECIACAACIDACDEVMDKMGYEPGLIRYT 317

Query: 68  KINSEYATQWPNITTK 83
             N +   +   I  K
Sbjct: 318 TENRDNGKEVKLIRGK 333


>gi|222530101|ref|YP_002573983.1| hypothetical protein Athe_2135 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456948|gb|ACM61210.1| protein of unknown function DUF362 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 375

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C   +C   CP            +   +CI C  C   CP  AIK
Sbjct: 318 CIGC--AECFNACPAQAIEMRSRKAYVDLKKCIRCYCCHELCPSKAIK 363


>gi|168180404|ref|ZP_02615068.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          NCTC 2916]
 gi|182668801|gb|EDT80779.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum
          NCTC 2916]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|163752011|ref|ZP_02159221.1| putative anaerobic reductase component [Shewanella benthica KT99]
 gi|161328116|gb|EDP99284.1| putative anaerobic reductase component [Shewanella benthica KT99]
          Length = 181

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDT 59
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A  I+ D 
Sbjct: 60  SCMHCENPACLMVCPTKAYHVRDDGIVVLDREKCTGCGLCVSACPYSAVNIREDD 114


>gi|158520213|ref|YP_001528083.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509039|gb|ABW66006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 389

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV+ CP +  Y   E+ +  I  D C     C   CP   I  
Sbjct: 170 CNHCAYPACVDACPRNAIYKRDEDGVVLIDQDRCKGYRFCLEACPYKVIYF 220


>gi|157960312|ref|YP_001500346.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157845312|gb|ABV85811.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 235

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA  I  +T+   
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDAAKCAGCKYCIGACPYDARFINKETDVAD 164

Query: 64  ELWLKINSEYA 74
                +NS+ A
Sbjct: 165 NCDFCLNSKLA 175


>gi|145589581|ref|YP_001156178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047987|gb|ABP34614.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 696

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C    C++VC           G+  + ++P+ C+ CG C   CP  A++ +  
Sbjct: 311 VGCN--ACIDVCSTGAISSLFKGGQGSVEVNPNLCMGCGACSTVCPSGAMRYNYP 363



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C LC    CV  CP     +  +   L+    +C+ CG+C   CP  A+  D
Sbjct: 572 DACTLC--MSCVSSCPEGALLDNPDEPILSFIEKQCVQCGICVQTCPEHALTLD 623



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I P+ C  CG C   CP  AI
Sbjct: 185 IDPEMCTRCGACVEVCPEGAI 205



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPD 58
           E C  C    CVEVCP       +    I+ D+C     C   C  + AI  D
Sbjct: 188 EMCTRCG--ACVEVCPEGAI---DLSFQINLDKCKSHRSCVTACASIGAISFD 235



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           LAI+ D C  C  C   CP  A+  + +  +  +++
Sbjct: 567 LAINKDACTLCMSCVSSCPEGALLDNPDEPILSFIE 602


>gi|62180084|ref|YP_216501.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
 gi|62127717|gb|AAX65420.1| anaerobic dimethyl sulfoxide reductase, subunit B [Salmonella
          enterica subsp. enterica serovar Choleraesuis str.
          SC-B67]
          Length = 140

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 11 LCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKP 57
           C+   C +VCP    ++ ++ F+ ++ + CI C  C   CP  A + 
Sbjct: 4  HCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGCRYCHMACPYGAPQY 51


>gi|20808125|ref|NP_623296.1| formate hydrogenlyase complex iron-sulfur subunit
          [Thermoanaerobacter tengcongensis MB4]
 gi|254479089|ref|ZP_05092442.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|20516712|gb|AAM24900.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Thermoanaerobacter tengcongensis
          MB4]
 gi|214034971|gb|EEB75692.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 198

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 9  CILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          CI C    C   CP +          G     I+   CI CG CE  CP  AI   TE
Sbjct: 40 CIGCG--ACATACPSNAITMDCDLDRGIKSWNINYGRCIFCGRCEEVCPTGAIVLSTE 95



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 40 CIDCGVCEPECPVDAIKPDTEPG 62
          CI CG C   CP +AI  D +  
Sbjct: 40 CIGCGACATACPSNAITMDCDLD 62


>gi|313681772|ref|YP_004059510.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
          kujiense DSM 16994]
 gi|313154632|gb|ADR33310.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
          kujiense DSM 16994]
          Length = 365

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C +VCP +         +I+   C+ C  C   CP +A+  D     E +
Sbjct: 23 HCADVCPTNAINLSARLPSINQSLCVGCAGCVAVCPSEALGLDDFNPTEFF 73



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C  VCP            I   P  C+ C +C   C  DAI   T   L  W
Sbjct: 258 CTAC--QMCYRVCPTAALTSDMRNSKIDFDPFLCVKCHLCHDVCESDAISVSTSYNLTEW 315

Query: 67  LK 68
            +
Sbjct: 316 FE 317


>gi|301311164|ref|ZP_07217092.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 20_3]
 gi|300830738|gb|EFK61380.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 20_3]
          Length = 310

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGCG--KCAKECPFEAITVTNNVAYIDYTKCRMCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 40.9 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DCV  C  D  +         +  ++C  CG C   CP   I+
Sbjct: 142 GYGDCVNACAFDAIHINPTTGIAEVDEEKCTSCGACVKACPKSIIE 187


>gi|293412078|ref|ZP_06654801.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|291468849|gb|EFF11340.1| 4Fe-4S ferredoxin [Escherichia coli B354]
          Length = 180

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDIATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|254468778|ref|ZP_05082184.1| NADH-quinone oxidoreductase chain i [beta proteobacterium KB13]
 gi|207087588|gb|EDZ64871.1| NADH-quinone oxidoreductase chain i [beta proteobacterium KB13]
          Length = 163

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPAMAITIESELREDNSRRTTRYDIDLTKCIFCGFCEESCPVDSI 118



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 62 ERCIACKLCEAVCPAMAITIESE 84


>gi|254166732|ref|ZP_04873586.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|289596500|ref|YP_003483196.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469]
 gi|197624342|gb|EDY36903.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|289534287|gb|ADD08634.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469]
          Length = 292

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPG 62
            +T+ CI C    C  +C  +  Y       I    C  CG C+  CPV+ AI  D    
Sbjct: 64  TITDKCINCGV--CDNICIYEAIYIENGQHKIKEYLCEGCGACKAVCPVEDAIIIDDTVS 121

Query: 63  LELWLKI-NSEY 73
              W++I N++Y
Sbjct: 122 --GWIRIANTKY 131


>gi|183233096|ref|XP_001913806.1| RNAseL inhibitor-like protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801731|gb|EDS89415.1| RNAseL inhibitor-like protein, putative [Entamoeba histolytica
          HM-1:IMSS]
          Length = 651

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
          V+ + C    C+  +C + CP++     C      +    I    CI C +C  +CP +A
Sbjct: 16 VINDRCKPGKCR-LECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKKCPFEA 74

Query: 55 IK 56
          IK
Sbjct: 75 IK 76


>gi|123406266|ref|XP_001302760.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|123470791|ref|XP_001318599.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121884080|gb|EAX89830.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121901362|gb|EAY06376.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 811

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 9   CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C    C   C    V+  +  +    ++ DECI C +C   CPV A+        + 
Sbjct: 748 CLQCG--KCALSCRDNSVEAIHLVDGKWKVNHDECIGCALCHSVCPVQAMHMVESEKRKN 805

Query: 66  W 66
           W
Sbjct: 806 W 806


>gi|158521706|ref|YP_001529576.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510532|gb|ABW67499.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 360

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 17  CVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C +  C V      ++   +  ++CI CG+C   CP +AI    +P  E 
Sbjct: 285 CADERCQVHAIEAADDTYRVIREKCIGCGLCVSTCPSEAIVLVEKPKDEQ 334



 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 2   TY-VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDE 39
           TY V+ E CI C    CV  CP +     E      I P E
Sbjct: 301 TYRVIREKCIGCGL--CVSTCPSEAIVLVEKPKDEQIDPPE 339


>gi|85860894|ref|YP_463096.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB]
 gi|85723985|gb|ABC78928.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB]
          Length = 544

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 27/85 (31%), Gaps = 28/85 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------EGENFLA-----I----HPDE-C 40
           E C LC    C  VCPV                    E    L      I     P   C
Sbjct: 26  EKCALCG--RCTAVCPVQAIEPAVFRKRVVSVQPGLAEKPGHLYSIYHGIRQKTDPAHFC 83

Query: 41  IDCGVCEPECPVDAIKPDTEPGLEL 65
           I CG+C+  CP  AI+P      + 
Sbjct: 84  IGCGMCDFVCPNGAIQPVRNEEQDK 108



 Score = 39.7 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 36 HPDECIDCGVCEPECPVDAIKP 57
            ++C  CG C   CPV AI+P
Sbjct: 24 DKEKCALCGRCTAVCPVQAIEP 45


>gi|15679545|ref|NP_276662.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622670|gb|AAB86023.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 630

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1   MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           M Y++  E C  C    C++ CP +      + +  I  D C+ CG C   C  DA++
Sbjct: 554 MHYMIDPEKCDGC--MACIKTCPAEAINGSRDEVHVIDQDGCLKCGSCLDICKRDAVR 609


>gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi
           35000HP]
 gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC
 gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus
           ducreyi 35000HP]
          Length = 702

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDC-------FYEGENF---LAIHPDECIDCGVCEPECP 51
           NCI C  ++C + CPV         F   E+    +  H D CI+CGVC   CP
Sbjct: 384 NCIRC--SNCSDACPVSLLPQQLYWFARAEDHQKSMEYHLDACIECGVCAYVCP 435


>gi|152978385|ref|YP_001344014.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Actinobacillus succinogenes 130Z]
 gi|150840108|gb|ABR74079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP            + ++ D C+ C  C   CP 
Sbjct: 94  QSCQHCTNAPCVAVCPTGASYIDPTTGIVDVNRDLCVGCQYCVAVCPY 141


>gi|95928880|ref|ZP_01311626.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans
          DSM 684]
 gi|95135225|gb|EAT16878.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans
          DSM 684]
          Length = 326

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 6  TENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          TE C  C    CV  CPV+ F      E      ++P  C  C  C  +CP +AI+
Sbjct: 8  TEQCTGCG--MCVNFCPVEVFQLETSGEKNTVKVVNPSACWACDTCVGQCPTNAIR 61


>gi|119356067|ref|YP_910711.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119353416|gb|ABL64287.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 233

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  V+           EG     I  D CI C  C    EC
Sbjct: 136 FIIENLCVGCGL--CLDKCPPKVNAIGYKFYGDVQEGGFRCYIDQDACISCSACFSTDEC 193

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 194 PSGALIEVLPDGQ 206


>gi|332798067|ref|YP_004459566.1| glycyl-radical enzyme activating protein family
          [Tepidanaerobacter sp. Re1]
 gi|332695802|gb|AEE90259.1| glycyl-radical enzyme activating protein family
          [Tepidanaerobacter sp. Re1]
          Length = 301

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CI C    CV VCP+D          I   +C  CG+C   CP  A
Sbjct: 56 CIGC--RTCVNVCPLDAISFDFGKHHIDRLKCSSCGICCESCPSGA 99



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 39 ECIDCGVCEPECPVDAIKPD 58
          +CI C  C   CP+DAI  D
Sbjct: 55 KCIGCRTCVNVCPLDAISFD 74


>gi|329850720|ref|ZP_08265565.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum
           C19]
 gi|328841035|gb|EGF90606.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum
           C19]
          Length = 159

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAITIEAEPRDDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 114



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 58 ERCIACKLCEAICPAQAITIEAEPRDD 84



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGL--CQEACPVDAIVEGPNF 120


>gi|319897452|ref|YP_004135649.1| formate-dependent nitrite reductase, 4fe4S subunit [Haemophilus
           influenzae F3031]
 gi|317432958|emb|CBY81325.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           influenzae F3031]
          Length = 225

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 139


>gi|301058345|ref|ZP_07199378.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
 gi|300447581|gb|EFK11313.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
          Length = 594

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAI 55
           V+ E C  C    C EVCP +            A++   C  CG C  EC  DAI
Sbjct: 380 VIEEKCKACG--KCAEVCPYNAITVDVKRKIPAAVNTAACAGCGTCAAECRFDAI 432



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + I  ++C  CG C   CP +AI  D +
Sbjct: 379 MVI-EEKCKACGKCAEVCPYNAITVDVK 405



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 25/76 (32%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECID-- 42
           YV  + C  C    C  VCPV   D F  G                +   I+ +EC+   
Sbjct: 38  YVDEKECTACGD--CATVCPVIRPDEFNLGLSSRRAIYSPFPQAVPSAYVINVNECLGHN 95

Query: 43  ---CGVCEPECPVDAI 55
              C  C+  C    I
Sbjct: 96  PVVCAKCKDACDKGCI 111



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDT 59
           +   EC  CG C   CPV  I+PD 
Sbjct: 38 YVDEKECTACGDCATVCPV--IRPDE 61


>gi|291530917|emb|CBK96502.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum 70/3]
          Length = 593

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI CK   C+    CP       +  + I  + C  C +C   CPV+AI
Sbjct: 539 ISDKCIQCK--KCIREIGCP--ALIVADGKVTIDNNLCTGCKLCAQICPVNAI 587


>gi|226949071|ref|YP_002804162.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2
          str. Kyoto]
 gi|226841860|gb|ACO84526.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2
          str. Kyoto]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|187776485|ref|ZP_02803043.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4196]
 gi|188025284|ref|ZP_02777379.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4113]
 gi|189010720|ref|ZP_02808951.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4076]
 gi|189402653|ref|ZP_02783828.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4401]
 gi|189403629|ref|ZP_02796672.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4486]
 gi|189406311|ref|ZP_02827703.2| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC508]
 gi|208810612|ref|ZP_03252488.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4206]
 gi|208816728|ref|ZP_03257848.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4045]
 gi|208818194|ref|ZP_03258514.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4042]
 gi|187766868|gb|EDU30712.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4196]
 gi|188013788|gb|EDU51910.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4113]
 gi|188998816|gb|EDU67802.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4076]
 gi|189354429|gb|EDU72848.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4401]
 gi|189359629|gb|EDU78048.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4486]
 gi|189375368|gb|EDU93784.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC508]
 gi|208725128|gb|EDZ74835.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4206]
 gi|208731071|gb|EDZ79760.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4045]
 gi|208738317|gb|EDZ85999.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7
          str. EC4042]
 gi|326343589|gb|EGD67351.1| NrfC-like protein [Escherichia coli O157:H7 str. 1125]
          Length = 184

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|150390052|ref|YP_001320101.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949914|gb|ABR48442.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 328

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C  T C + CPVD    E +    I  D+CI CGVCE +CP DAI
Sbjct: 277 DLCIGC--TICKKNCPVDAIEGELKENHKIIEDKCIGCGVCEQKCPKDAI 324



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + ++  E C  C    CVE CP        E      IH D CI C +C+  CPVDAI+ 
Sbjct: 239 LAFIDYEKCTNC--FVCVEKCPTKAIEGQLEKRKKALIHEDLCIGCTICKKNCPVDAIEG 296

Query: 58  DTEPGLE 64
           + +   +
Sbjct: 297 ELKENHK 303



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            CI CK   CV+ CP +      N   I  ++C +C VC  +CP  AI+   E
Sbjct: 217 ACISCK--ICVKSCPFEAIDFENNLAFIDYEKCTNCFVCVEKCPTKAIEGQLE 267



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 17  CVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CV  CP D     +N +A I+P++C  C  C   CP D I
Sbjct: 149 CVRECPFDAIDIVDNRIARINPEKCTGCTKCIAVCPKDVI 188



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 18/78 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCF-------------YEGENFLAIHPD---ECIDCGVCEPEC 50
           E C  C  T C+ VCP D                  E    + P     CI C +C   C
Sbjct: 171 EKCTGC--TKCIAVCPKDVIDMVPYEQDVIITCNNKETGKVVRPKCGVACISCKICVKSC 228

Query: 51  PVDAIKPDTEPGLELWLK 68
           P +AI  +       + K
Sbjct: 229 PFEAIDFENNLAFIDYEK 246


>gi|153214796|ref|ZP_01949625.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
 gi|124115138|gb|EAY33958.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
          Length = 553

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGTDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGTDQTGHRIQIN 213


>gi|94499240|ref|ZP_01305778.1| Polyferredoxin [Oceanobacter sp. RED65]
 gi|94428872|gb|EAT13844.1| Polyferredoxin [Oceanobacter sp. RED65]
          Length = 466

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCPV     +G  +       CIDCG C   C
Sbjct: 270 DCIDC--RLCVQVCPVGIDIRQGLQY------SCIDCGACIDAC 305



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 271 CIDCRLCVQVCPVG 284


>gi|27365883|ref|NP_761411.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
 gi|27362032|gb|AAO10938.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
          Length = 552

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP          +  + + I+P  C   G C   CP +AI
Sbjct: 172 TDLCAHSSRGVKGCERCVDACPAGALSSQGSEKTGHRIEINPYLCQGVGTCATSCPTEAI 231

Query: 56  KPDTEPGLE--LWLK 68
                   E   +++
Sbjct: 232 HYALPNPQETQKFIE 246



 Score = 43.2 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T  C LC    CV VCP    +       L     +C+ CG+C   CP
Sbjct: 416 TTGCTLC--MSCVAVCPTRALHTDGESPSLQFVEQDCVQCGLCTKACP 461



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+           ++IN
Sbjct: 165 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSQGSEKTGHRIEIN 212


>gi|83311878|ref|YP_422142.1| NADH dehydrogenase subunit I [Magnetospirillum magneticum AMB-1]
 gi|115502533|sp|Q2W3J2|NUOI_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|82946719|dbj|BAE51583.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit [Magnetospirillum magneticum AMB-1]
          Length = 162

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      +   +CI CG+C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEPEPRDDGSRRARRYDLDMTKCIYCGLCQEACPVDAI 117



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 61 ERCIACKLCEAICPAQAITIEPEPRDD 87



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 102 CIYCGL--CQEACPVDAIVEGPNFEY 125


>gi|302349094|ref|YP_003816732.1| Electron transport protein, containing 4Fe-4S binding domain
           protein [Acidilobus saccharovorans 345-15]
 gi|302329506|gb|ADL19701.1| Electron transport protein, containing 4Fe-4S binding domain
           protein [Acidilobus saccharovorans 345-15]
          Length = 172

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C+   CVE+CP     +G+     +   +CI C VC   CP  A + +    
Sbjct: 56  CQQCEPAPCVELCPTGALSKGKLGEVNLDKGKCIGCRVCSEVCPYGAARMEPREA 110


>gi|302344259|ref|YP_003808788.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640872|gb|ADK86194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 175

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C    C+ VCP         +  + I    CI C  C   CP  A
Sbjct: 58  PCFHCTEASCLAVCPTGAVIKRPSDGIVYIDQARCIGCKSCIAACPWGA 106


>gi|297520078|ref|ZP_06938464.1| electron transport protein HydN [Escherichia coli OP50]
          Length = 115

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 12 CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C+   C  VCP       + F+ +  + CI C  C   CP  A++    P
Sbjct: 1  CEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAMEVVVRP 50


>gi|296283848|ref|ZP_06861846.1| NADH dehydrogenase subunit I [Citromicrobium bathyomarinum JL354]
          Length = 161

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAVCPAQAITIESEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 116



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++EP  +
Sbjct: 60 ERCIACKLCEAVCPAQAITIESEPRAD 86


>gi|291460676|ref|ZP_06600066.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416635|gb|EFE90354.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 296

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP D  +  +N   ++ ++C DCG+C  +CP  AI
Sbjct: 222 CIACGL--CEKNCPFDAIHVTDNLAVMN-EKCTDCGICAQKCPTGAI 265



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            +  CV+ C  D  +       +  ++C  CG C   CP
Sbjct: 150 GYGSCVKACQFDAIHVINGVAVVDKEKCTACGACIKACP 188


>gi|167625917|ref|YP_001676211.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167355939|gb|ABZ78552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 181

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDT 59
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A  I+ D 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYSAVSIREDD 114


>gi|88603099|ref|YP_503277.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188561|gb|ABD41558.1| CoB--CoM heterodisulfide reductase subunit A [Methanospirillum
           hungatei JF-1]
          Length = 671

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + E C  C    CV +CP      GE      + +   +C  CG C   CP  AIK    
Sbjct: 596 IDELCAGCG--MCVNLCPYSALSLGEKNGRTVMVVTEAKCKGCGTCGGFCPGGAIKMQHF 653

Query: 61  PGLELWLKINSEYA 74
              ++  +I++ +A
Sbjct: 654 TTPQIVAQIDAFFA 667


>gi|15669061|ref|NP_247865.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2496134|sp|Q58280|Y870_METJA RecName: Full=Uncharacterized protein MJ0870
 gi|1591554|gb|AAB98876.1| coenzyme F420-reducing hydrogenase, beta subunit (frhB)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 620

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  E C  C    C EVC V+           + + C+ CG C   CP +A
Sbjct: 490 VNEEKCNGCG--RCAEVCKVEAIDIRGETSYTNYNVCVGCGKCIKNCPNEA 538



 Score = 37.1 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP  C           G  +  ++ ++C  CG C   C V+AI
Sbjct: 465 ISGCPNGCVRPQVHDIGIAGVKYPKVNEEKCNGCGRCAEVCKVEAI 510


>gi|114566570|ref|YP_753724.1| signal transduction histidine kinase regulating C4-dicarboxylate
          transport system-like protein [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337505|gb|ABI68353.1| Signal transduction histidine kinase regulating C4-dicarboxylate
          transport system-like protein [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
          Length = 696

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPEC 50
          ENCI C    C+ VCPV    +G  N +  H   CI CG C   C
Sbjct: 13 ENCINC--HQCIAVCPVKICSDGSGNVVKFHNHLCIGCGRCIEAC 55


>gi|308160391|gb|EFO62883.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia lamblia P15]
          Length = 281

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV+ CP+ C     E    +    + CI CG C   C   AI
Sbjct: 7  VDEDLCIGCNV--CVQGCPIQCIEVNAETRKLVFRAKETCISCGHCASVCRTAAI 59



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           F  +  D CI C VC   CP+  I+ + E    ++  
Sbjct: 3  RFPEVDEDLCIGCNVCVQGCPIQCIEVNAETRKLVFRA 40


>gi|258406585|ref|YP_003199327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257798812|gb|ACV69749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 371

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C+ VCP            L +   +CI C  C   C  +A++ D    +  +
Sbjct: 195 CTGCGQ--CLPVCPAGALTIDSQSKTLLLDTAQCIGCAACILACRHNALQVDWTSSVTAF 252

Query: 67  LKINSEYAT 75
            +  +EYA 
Sbjct: 253 QERMAEYAA 261


>gi|150388057|ref|YP_001318106.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149947919|gb|ABR46447.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 389

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPEC 50
          + E+C  C  T C  +CP        +   FL   I+ + C DCG+C   C
Sbjct: 7  IKEDCCGC--TSCQHICPTKAIEMKPDEEGFLYPEINQELCNDCGLCRTVC 55



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
           ++C  C  C+  CP  AI+   +    L+ +IN E 
Sbjct: 8  KEDCCGCTSCQHICPTKAIEMKPDEEGFLYPEINQEL 44


>gi|330824909|ref|YP_004388212.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
 gi|329310281|gb|AEB84696.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
          Length = 474

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI CG+C   C
Sbjct: 267 DCIDC--TLCVQVCPVGIDIRDGLQY-----ECIGCGLCIDAC 302



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 268 CIDCTLCVQVCPVG 281


>gi|323700499|ref|ZP_08112411.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460431|gb|EGB16296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 302

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C+   CV  C      + EN       ++CI C  C   CP +    + +  
Sbjct: 112 CMHCQDPACVSACITGALTKKENGAVHYDVNKCIGCRYCMAACPFEIPAYEYDKP 166


>gi|319762830|ref|YP_004126767.1| cytochrome c oxidase accessory protein ccog [Alicycliphilus
           denitrificans BC]
 gi|317117391|gb|ADU99879.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans BC]
          Length = 474

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI CG+C   C
Sbjct: 267 DCIDC--TLCVQVCPVGIDIRDGLQY-----ECIGCGLCIDAC 302



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 268 CIDCTLCVQVCPVG 281


>gi|260219883|emb|CBA26860.1| Ferredoxin [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 87

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +  Y GE    I P +C +C        C   CPV  
Sbjct: 1  MALLITDECINCDV--CEPECPNEAIYLGEQIYEIDPHKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP +AI 
Sbjct: 7  DECINCDVCEPECPNEAIY 25


>gi|257065442|ref|YP_003145114.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256793095|gb|ACV23765.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
            C  C++  C +VCP    Y+ E   + I   +CI C +C   CP +A
Sbjct: 64  ACQHCENPACQKVCPTGATYKDEMGRVEIDYQKCIGCRMCMAACPFNA 111


>gi|218782911|ref|YP_002434229.1| ferredoxin [Desulfatibacillum alkenivorans AK-01]
 gi|218764295|gb|ACL06761.1| Heterodisulfide reductase, subunit A-like protein [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1076

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 4    VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            V ++ C  CK   CV +CP     F E      I    C  CG+C   C   AI      
Sbjct: 1008 VDSQFCSGCKV--CVSICPYSAPLFNEKTGKAEIQSTLCKGCGLCVASCRSGAIHLAGFD 1065

Query: 62   GLELWLKINS 71
              +++  I++
Sbjct: 1066 TSQIFSMIDA 1075



 Score = 40.9 bits (95), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 13/62 (20%)

Query: 8   NCILCKHTDCVEVCPVD---CFYEGENFLA--------IHPDECIDCGVCEPECPVDAIK 56
           +CILC    CV VC              L         +  D C  CG CE  CP   IK
Sbjct: 123 DCILCGL--CVRVCEKMGNSAITLTGRGLEMKVDTPFSVQSDICKGCGACEFICPTGHIK 180

Query: 57  PD 58
            +
Sbjct: 181 LE 182


>gi|218885366|ref|YP_002434687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756320|gb|ACL07219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 147

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++C+ C    C  +CP            +    D C  CG+C   CPV A+  + E G
Sbjct: 90  DSCMHCG--MCTAICPTSALAMDIEARVVVFDKDRCTACGLCTRVCPVGAMNVEVENG 145



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEP 61
             D C+ CG+C   CP  A+  D E 
Sbjct: 88  DEDSCMHCGMCTAICPTSALAMDIEA 113


>gi|168699247|ref|ZP_02731524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 184

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF------------LAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C   CPVDC Y  +                I   +C+ C +C   CPVD I 
Sbjct: 63  CIGCD--KCARACPVDCIYIDKEKAPPPHKGFVVTGFKIDYTKCMFCALCVDPCPVDCIF 120

Query: 57  PDTEPGLELWL 67
             +   +  + 
Sbjct: 121 MGSNHDISTYT 131



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 39 ECIDCGVCEPECPVDAIKPDTE 60
           CI C  C   CPVD I  D E
Sbjct: 62 TCIGCDKCARACPVDCIYIDKE 83


>gi|167836057|ref|ZP_02462940.1| NADH dehydrogenase subunit I [Burkholderia thailandensis MSMB43]
          Length = 162

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESQTREDNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 61 ERCIACKLCEAVCPAMAITIESQ 83


>gi|167585883|ref|ZP_02378271.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ubonensis Bu]
          Length = 158

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP---- 57
           V+ EN CI C  T C++ CPVD        +  +    C  C +C P CPVD I      
Sbjct: 81  VIDENLCIGC--TLCMQACPVDAIAGAPKQMHTVIASLCTGCDLCVPPCPVDCIAMVPVT 138

Query: 58  DTEPGLELWLKINSEYATQ 76
               G + W +  ++ A +
Sbjct: 139 GEHTGWDAWTQAQADAARE 157



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PV+          I  + CI C +C   CPVDAI
Sbjct: 69  PVNGDERARPVAVIDENLCIGCTLCMQACPVDAI 102


>gi|153941336|ref|YP_001391085.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
 gi|152937232|gb|ABS42730.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
 gi|295319132|gb|ADF99509.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. 230613]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|152993630|ref|YP_001359351.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
 gi|151425491|dbj|BAF72994.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
          Length = 91

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCG------VCEP 48
          M  ++T+ CI C    C++ CPV+   +      GE    ++PD+C++C        C  
Sbjct: 1  MAVIITDICINC--AACIDECPVEAIVDEDDNPTGEEIYYVYPDKCVECVGYHDVPACAE 58

Query: 49 ECPVD-AIKPDTEPG 62
           CP +  I+ D    
Sbjct: 59 ACPTEGCIQWDDPVE 73


>gi|153801160|ref|ZP_01955746.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
 gi|124123280|gb|EAY42023.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
          Length = 553

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|160897890|ref|YP_001563472.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
 gi|160363474|gb|ABX35087.1| cytochrome c oxidase accessory protein CcoG [Delftia acidovorans
           SPH-1]
          Length = 489

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI CG+C   C
Sbjct: 282 DCIDC--TLCVQVCPVGIDIRDGLQY-----ECIGCGLCIDAC 317



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 283 CIDCTLCVQVCPVG 296


>gi|117617793|ref|YP_857568.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559200|gb|ABK36148.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 576

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C++VCP D        + I P  C   G C   CP  AI       
Sbjct: 219 CLDVCPTDALKPINGRIQIDPHLCQGFGSCASACPTGAIAYHQPDA 264



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +          I  D CI CG+CE  CP  AI
Sbjct: 443 DCTLCMG--CVAVCPSRALHAVGHAPGLNFIEQD-CIQCGMCEKACPEQAI 490



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 18  VEVCPVDCFYEGENFLAIHPDEC-------IDCGVCEPECPVDAIKP 57
            E+C +   ++   +  + P+ C         C  C   CP DA+KP
Sbjct: 184 AEICALTGIFDKPRYFRLDPEACAFTARGVPGCSRCLDVCPTDALKP 230


>gi|91773303|ref|YP_565995.1| hypothetical protein Mbur_1327 [Methanococcoides burtonii DSM 6242]
 gi|91712318|gb|ABE52245.1| phosphoadenosine phosphosulfate reductase [Methanococcoides
           burtonii DSM 6242]
          Length = 667

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPEC 50
           C  C    C++VCPV+    G     + I+ D CI CG C   C
Sbjct: 609 CTECG--ICLKVCPVNAIELGSEKGRVYIN-DSCISCGKCTDGC 649



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPG 62
           +C +CG+C   CPV+AI+  +E G
Sbjct: 608 KCTECGICLKVCPVNAIELGSEKG 631


>gi|51244192|ref|YP_064076.1| iron-sulfur cluster binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50875229|emb|CAG35069.1| related to iron-sulfur cluster binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 299

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C    C ++C      E      + P  C  CG+C   CP  AI+   +   + +
Sbjct: 66  DKCISCG--TCRDLCKFGAISED---FVVDPIGCEGCGICVDFCPEQAIEFPQQKCGDWF 120

Query: 67  L 67
           +
Sbjct: 121 I 121



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 27 YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + G     I  D+CI CG C   C   AI  D
Sbjct: 55 FMGGCLAEIRQDKCISCGTCRDLCKFGAISED 86


>gi|121726918|ref|ZP_01680119.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52]
 gi|147673441|ref|YP_001217069.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|262169548|ref|ZP_06037239.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27]
 gi|121630680|gb|EAX63067.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52]
 gi|146315324|gb|ABQ19863.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|227013430|gb|ACP09640.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|262021782|gb|EEY40492.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27]
          Length = 553

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG       + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|323952178|gb|EGB48051.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323956682|gb|EGB52419.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
          Length = 184

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E  +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|300311103|ref|YP_003775195.1| NADH dehydrogenase I subunit I [Herbaspirillum seropedicae SmR1]
 gi|300073888|gb|ADJ63287.1| NADH dehydrogenase I (Chain I) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESEQRADGTRRTSRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRAD 87


>gi|288931410|ref|YP_003435470.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ferroglobus placidus DSM 10642]
 gi|288893658|gb|ADC65195.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ferroglobus placidus DSM 10642]
          Length = 623

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + VTE C LC    CV    CP          + I    C  CG C   CP  AIK
Sbjct: 567 PFEVTEACTLCL--RCVSDFTCP--AIIYDGEKVWIDEALCAGCGFCVQVCPEKAIK 619


>gi|256811073|ref|YP_003128442.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           fervens AG86]
 gi|256794273|gb|ACV24942.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           fervens AG86]
          Length = 620

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  C    C EVC V+           + + CI CG C   CP +A
Sbjct: 493 EKCNGCG--RCAEVCKVEAIDVRGETSYTNYNVCIGCGKCIKNCPNEA 538



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CV     D    G  F  +  ++C  CG C   C V+AI
Sbjct: 472 CVRPQVHDVGIVGVKFPEVDREKCNGCGRCAEVCKVEAI 510


>gi|256828363|ref|YP_003157091.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577539|gb|ACU88675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 425

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECPVD 53
           VV E  C  C    C + CPV+                 LA   + C+ CGVC  +CP  
Sbjct: 286 VVDETLCTGCGL--CAKACPVNAVSVEKISGQDARKPKKLADMKEHCLGCGVCALKCPTG 343

Query: 54  AIKPDTEP 61
           AI   + P
Sbjct: 344 AITLQSRP 351



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            +    C  CG+C   CPV+A+  +   G +
Sbjct: 286 VVDETLCTGCGLCAKACPVNAVSVEKISGQD 316


>gi|91210887|ref|YP_540873.1| hypothetical protein UTI89_C1866 [Escherichia coli UTI89]
 gi|117623855|ref|YP_852768.1| hypothetical protein APECO1_753 [Escherichia coli APEC O1]
 gi|218558543|ref|YP_002391456.1| hypothetical protein ECS88_1722 [Escherichia coli S88]
 gi|237705620|ref|ZP_04536101.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|331657649|ref|ZP_08358611.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
 gi|91072461|gb|ABE07342.1| putative ferredoxin-like protein YdhY [Escherichia coli UTI89]
 gi|115512979|gb|ABJ01054.1| putative ferredoxin-like protein YdhY [Escherichia coli APEC O1]
 gi|218365312|emb|CAR03033.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli S88]
 gi|226900377|gb|EEH86636.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294491081|gb|ADE89837.1| iron-sulfur cluster-binding protein [Escherichia coli IHE3034]
 gi|307626840|gb|ADN71144.1| hypothetical protein UM146_08785 [Escherichia coli UM146]
 gi|315286336|gb|EFU45772.1| 4Fe-4S binding domain protein [Escherichia coli MS 110-3]
 gi|323952181|gb|EGB48054.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323956575|gb|EGB52313.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|331055897|gb|EGI27906.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA206]
          Length = 208

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACP 167


>gi|88602769|ref|YP_502947.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88188231|gb|ABD41228.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 57

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + C  C+   CV+ CP            ++ + C+DCG C   CP +AI  +
Sbjct: 8  DKCTGCE--TCVDECPATAITMENEKAVVNNELCVDCGSCVDVCPAEAITME 57



 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I  D+C  C  C  ECP  AI  + E
Sbjct: 5  IDKDKCTGCETCVDECPATAITMENE 30


>gi|68304957|gb|AAY89968.1| predicted siroheme sulfite reductase beta subunit [uncultured
           bacterium BAC13K9BAC]
          Length = 361

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C P CP   I       L +W+
Sbjct: 207 CERPSVVARCPVAAIRPAMVNGKPSLEVDEKKCICCGACFPPCPPMQINDPEHSKLAIWV 266

Query: 68  KINSEYATQWPN 79
             N   A   P+
Sbjct: 267 GGNHSNARSKPS 278


>gi|56460895|ref|YP_156176.1| electron transport complex protein RnfB [Idiomarina loihiensis
           L2TR]
 gi|56179905|gb|AAV82627.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Idiomarina
           loihiensis L2TR]
          Length = 193

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           + CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 112 DECIGC--TKCIQACPVDAILGAAKQMHTVIEHECTGCDLCVEPCPVDCI 159



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  DECI C  C   CPVDAI
Sbjct: 108 VIREDECIGCTKCIQACPVDAI 129


>gi|329115318|ref|ZP_08244072.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001]
 gi|326695297|gb|EGE46984.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001]
          Length = 605

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 9   CILCKHT----DCVEVCPVDCFYE-GE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C +     +C   CP       G     A+  D C  C VC  +CP  AI+ D EP
Sbjct: 524 CLSCGNCFECDNCYASCPEQAITRLGPGKGYAVSMDLCTGCAVCAEQCPCHAIEMDPEP 582


>gi|315638619|ref|ZP_07893793.1| ferredoxin [Campylobacter upsaliensis JV21]
 gi|315481243|gb|EFU71873.1| ferredoxin [Campylobacter upsaliensis JV21]
          Length = 81

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++C+ C    C E CP D   E      I PD C +C        C   CP + 
Sbjct: 1  MSLLITKDCVCCD--ACREECPDDAICENSPIYVIDPDLCSECVNDFSEPACIVACPYEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|239999835|ref|ZP_04719759.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae 35/02]
 gi|317165124|gb|ADV08665.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 159

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         I   +CI CG CE  CP DAI
Sbjct: 58  ERCIACKL--CEAVCPAMAINIESEEREDGTRRTKRYDIDLTKCIFCGFCEEACPTDAI 114



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 58 ERCIACKLCEAVCPAMAINIESEERED 84


>gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
 gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
          Length = 599

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIK 56
           ++ E C  C  T C   CP +        L    I    CI CG C   C  +AI+
Sbjct: 542 IIPEKCTGC--TACAIFCPANAI--TGEKLKPHEIDQSACIKCGTCYEVCRFNAIE 593



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I P++C  C  C   CP +AI  +     E
Sbjct: 540 YVIIPEKCTGCTACAIFCPANAITGEKLKPHE 571


>gi|157364729|ref|YP_001471496.1| dihydroorotate dehydrogenase [Thermotoga lettingae TMO]
 gi|157315333|gb|ABV34432.1| dihydroorotate dehydrogenase [Thermotoga lettingae TMO]
          Length = 386

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C +VC  D  Y+ E    I  + C  CG+C   CPV AI+
Sbjct: 334 CTSCG--TCQKVCIYDAPYQSEKSYVI-SELCDGCGLCVKLCPVKAIE 378


>gi|148379790|ref|YP_001254331.1| hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|153933959|ref|YP_001384087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. ATCC 19397]
 gi|153936361|ref|YP_001387627.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. Hall]
 gi|148289274|emb|CAL83370.1| putative hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|152930003|gb|ABS35503.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. ATCC 19397]
 gi|152932275|gb|ABS37774.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
          str. Hall]
 gi|322806068|emb|CBZ03635.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 574

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRACPVKAIKFKNEKAEIVEERCISCGRCLVICPQNA 54


>gi|148244791|ref|YP_001219485.1| respiratory nitrate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326618|dbj|BAF61761.1| respiratory nitrate reductase beta subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 513

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 182 CEHCLNPSCVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWQSG 237


>gi|197120279|ref|YP_002140706.1| NADH dehydrogenase I subunit I [Geobacter bemidjiensis Bem]
 gi|253702587|ref|YP_003023776.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
 gi|197089639|gb|ACH40910.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem]
 gi|251777437|gb|ACT20018.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
          Length = 132

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 14/86 (16%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGEN--------FLAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C  VCP  C     GE+           I    CI CG C   CPVDAI+  
Sbjct: 51  CVACYL--CPTVCPAKCITVEAGEDQNHDKYAAKYEIDMLRCIFCGYCVEACPVDAIRMT 108

Query: 59  TEPGLELWLKINSEYATQWPNITTKK 84
            +  L  + +  +++      +  KK
Sbjct: 109 EQFELANYSR--ADFTFTKERLLEKK 132


>gi|53804655|ref|YP_113673.1| formate dehydrogenase, iron-sulfur subunit [Methylococcus
           capsulatus str. Bath]
 gi|53758416|gb|AAU92707.1| formate dehydrogenase, iron-sulfur subunit [Methylococcus
           capsulatus str. Bath]
          Length = 290

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   H + CI CG C   CP D
Sbjct: 95  DGCMHCADPGCLKACPSPGAIIQYSNGIVDFHEENCIGCGYCIAGCPFD 143


>gi|26247923|ref|NP_753963.1| hypothetical protein c2068 [Escherichia coli CFT073]
 gi|110641795|ref|YP_669525.1| hypothetical protein ECP_1621 [Escherichia coli 536]
 gi|191173451|ref|ZP_03034979.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
 gi|215486849|ref|YP_002329280.1| hypothetical protein E2348C_1759 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218689616|ref|YP_002397828.1| hypothetical protein ECED1_1873 [Escherichia coli ED1a]
 gi|227885910|ref|ZP_04003715.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|300987853|ref|ZP_07178404.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300995332|ref|ZP_07181029.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|301050997|ref|ZP_07197842.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|306815073|ref|ZP_07449229.1| hypothetical protein ECNC101_23563 [Escherichia coli NC101]
 gi|312966827|ref|ZP_07781045.1| 4Fe-4S binding domain protein [Escherichia coli 2362-75]
 gi|26108326|gb|AAN80528.1|AE016761_103 Putative ferredoxin-like protein ydhY [Escherichia coli CFT073]
 gi|110343387|gb|ABG69624.1| putative ferredoxin-like protein YdhY [Escherichia coli 536]
 gi|190906293|gb|EDV65904.1| iron-sulfur cluster-binding protein [Escherichia coli F11]
 gi|215264921|emb|CAS09307.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|218427180|emb|CAR07969.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli ED1a]
 gi|222033430|emb|CAP76171.1| Uncharacterized ferredoxin-like protein ydhy [Escherichia coli
           LF82]
 gi|227837089|gb|EEJ47555.1| oxidoreductase, Fe-S subunit [Escherichia coli 83972]
 gi|300297330|gb|EFJ53715.1| 4Fe-4S binding domain protein [Escherichia coli MS 185-1]
 gi|300306001|gb|EFJ60521.1| 4Fe-4S binding domain protein [Escherichia coli MS 200-1]
 gi|300406165|gb|EFJ89703.1| 4Fe-4S binding domain protein [Escherichia coli MS 45-1]
 gi|305851721|gb|EFM52174.1| hypothetical protein ECNC101_23563 [Escherichia coli NC101]
 gi|307553695|gb|ADN46470.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli ABU
           83972]
 gi|312288291|gb|EFR16193.1| 4Fe-4S binding domain protein [Escherichia coli 2362-75]
 gi|312946274|gb|ADR27101.1| hypothetical protein NRG857_08385 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315290552|gb|EFU49926.1| 4Fe-4S binding domain protein [Escherichia coli MS 153-1]
 gi|315299685|gb|EFU58927.1| 4Fe-4S binding domain protein [Escherichia coli MS 16-3]
 gi|320195430|gb|EFW70055.1| putative oxidoreductase, Fe-S subunit [Escherichia coli WV_060327]
 gi|324007025|gb|EGB76244.1| 4Fe-4S binding domain protein [Escherichia coli MS 57-2]
 gi|324011430|gb|EGB80649.1| 4Fe-4S binding domain protein [Escherichia coli MS 60-1]
          Length = 208

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|197101747|ref|NP_001125353.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Pongo abelii]
 gi|269969395|sp|P0CB97|NDUS8_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|55727800|emb|CAH90653.1| hypothetical protein [Pongo abelii]
          Length = 210

 Score = 49.4 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|320450531|ref|YP_004202627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermus scotoductus SA-01]
 gi|320150700|gb|ADW22078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermus
           scotoductus SA-01]
          Length = 284

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
            V   C+ C    CV  CP D  ++ ++ +  I  + C+ C  C P CP ++   D 
Sbjct: 123 FVPRPCMQCDEPPCVPACPYDATWKRKDGIVEIDYELCVGCEKCIPPCPYNSRHKDD 179


>gi|317480456|ref|ZP_07939552.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903403|gb|EFV25261.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C +  CV+ CP     +G+    +  ++CI C  C   CP  A   DT 
Sbjct: 136 VDAERCTHCGY--CVKHCPAGAIIKGDECNTV-AEKCIKCCACVKGCPQKARTYDTP 189


>gi|309775696|ref|ZP_07670694.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916535|gb|EFP62277.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 57

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV VCPV      +          CIDCG C   CPV AI
Sbjct: 5  VDVDTCIGCG--ACVGVCPVGALSMNDEGKSVCDEGTCIDCGSCVSACPVSAI 55



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          +  D CI CG C   CPV A+  + E
Sbjct: 5  VDVDTCIGCGACVGVCPVGALSMNDE 30


>gi|293407197|ref|ZP_06651121.1| electron transporter HydN [Escherichia coli FVEC1412]
 gi|291426008|gb|EFE99042.1| electron transporter HydN [Escherichia coli FVEC1412]
          Length = 159

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           T+     C  C+   C  VCPVD        + +    CI C  C   CP  
Sbjct: 53  TWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFG 104


>gi|268325215|emb|CBH38803.1| heterodisulfide reductase subunit A [uncultured archaeon]
          Length = 728

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E CI C    C EVCP       E      ++   C  CG C   CP  A         +
Sbjct: 623 EICIGCG--TCAEVCPYGALELDEVMQVMTVNEAVCKGCGGCNSVCPSGAATMKHYRDRQ 680

Query: 65  LWLKINS 71
           ++ ++ +
Sbjct: 681 VYAQLEA 687



 Score = 41.7 bits (97), Expect = 0.039,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDT 59
           I+ + CI CG C   CP  A++ D 
Sbjct: 620 INEEICIGCGTCAEVCPYGALELDE 644



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            I  D+C DC  C   CPV  I  +   GL     I
Sbjct: 265 YIDSDKCKDCTPCIEACPVKDIPDEFNEGLSTRSAI 300



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 41/101 (40%)

Query: 3   YVVTENCILCKHTDCVEVCPV----DCFYEG---------------ENFLAIHPDECI-- 41
           Y+ ++ C  C  T C+E CPV    D F EG                    I  + C+  
Sbjct: 265 YIDSDKCKDC--TPCIEACPVKDIPDEFNEGLSTRSAIYLPFPFAVPPTYTIDAENCLLL 322

Query: 42  ---DCG--------------VCEPECPVDAIKPDTEPGLEL 65
               CG               C   CP  AI  + +  +E 
Sbjct: 323 KEGKCGDATLESIKEGKAVPPCMAACP-GAIDFEQKEEIEE 362


>gi|261823320|ref|YP_003261426.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
 gi|261607333|gb|ACX89819.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
          Length = 305

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    CV+VC         N   I  + CI CG C   CP  A++
Sbjct: 60  DCIRCG--KCVDVCKQHALSP-NNPFFIDRERCIQCGDCTHVCPTQALE 105


>gi|239908733|ref|YP_002955475.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798600|dbj|BAH77589.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 141

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          M Y + E C+ C  + C + CP             I    C+DCGVC   CP  AI
Sbjct: 1  MAYEIDEACVGC--SACAKKCPEGAISGEPKKQHQIDSLFCVDCGVCFNTCPRGAI 54



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  CK   C+  CP       +  +       + P  C+ CG C+  C   AI       
Sbjct: 80  CAACK--TCLLHCPQGAISVVKKGIFRSLKCQVDPLVCVGCGACQNLCITGAITLRDPDQ 137

Query: 63  LE 64
            +
Sbjct: 138 AD 139


>gi|225571973|ref|ZP_03780837.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040506|gb|EEG50752.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM
           10507]
          Length = 742

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI-KPDTE 60
           E C  C    C E+CP D        EG  + ++  ++CI CG+C+  C   A   P   
Sbjct: 381 EECYGC--YACKEICPKDAISMETDEEGFYYPSVDHEKCISCGLCQKVCIRLAEHFPQEI 438

Query: 61  PGLELWLKINSEYATQ 76
              +++  +N + + +
Sbjct: 439 LQPKVYGAVNKDMSAR 454



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 10/42 (23%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           CP            I  +EC  C  C+  CP DAI  +T+  
Sbjct: 374 CPTG----------ILKEECYGCYACKEICPKDAISMETDEE 405


>gi|210610078|ref|ZP_03288257.1| hypothetical protein CLONEX_00443 [Clostridium nexile DSM 1787]
 gi|210152689|gb|EEA83695.1| hypothetical protein CLONEX_00443 [Clostridium nexile DSM 1787]
          Length = 408

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPEC 50
          T+ C  C    C + C  D    G+   L I+P  C  C  C   C
Sbjct: 46 TDTCADCFERACQKSCIFDAIETGKEGELFINPSRCEGCAACIDAC 91


>gi|167756713|ref|ZP_02428840.1| hypothetical protein CLORAM_02251 [Clostridium ramosum DSM 1402]
 gi|237732719|ref|ZP_04563200.1| pyruvate-flavodoxin oxidoreductase [Mollicutes bacterium D7]
 gi|167702888|gb|EDS17467.1| hypothetical protein CLORAM_02251 [Clostridium ramosum DSM 1402]
 gi|229384214|gb|EEO34305.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. D7]
          Length = 1172

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 31/74 (41%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE---------------GENFLA--------------IHP 37
           +NCI C   +CV VCP                     G++ L               + P
Sbjct: 688 DNCIQCN--NCVMVCPHATIRAFLLDEEEMANLPENIGDDVLVPMGKDMGGLVYRIQVSP 745

Query: 38  DECIDCGVCEPECP 51
           D C+ CG+C  ECP
Sbjct: 746 DNCVGCGLCVTECP 759


>gi|153829757|ref|ZP_01982424.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39]
 gi|148874736|gb|EDL72871.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39]
          Length = 553

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 465



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 213


>gi|150399566|ref|YP_001323333.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanococcus vannielii SB]
 gi|150012269|gb|ABR54721.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanococcus vannielii SB]
          Length = 85

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C++C+  +C   CP  C  E      I  D C  C +CE ECPV AIK + E 
Sbjct: 32 EKCVMCE--NCYIFCPEGCIQEKNGKFEIDYDYCKGCLICERECPVKAIKAEREE 84


>gi|121595761|ref|YP_987657.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120607841|gb|ABM43581.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 699

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
                  CV++C  +          + ++P  C+ CG C   CP  A+        +
Sbjct: 316 RGVGCNACVDICSAEAISSDPVRQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQD 372



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  + C LC    CV  CP     +      L      C+ CG+CE  CP +AI
Sbjct: 565 VDKDRCTLCL--SCVSACPAGALQDNPQAPQLRFTEQNCVQCGLCERTCPENAI 616



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + +  D C  C  C   CP  A++ + +     + + N
Sbjct: 563 VVVDKDRCTLCLSCVSACPAGALQDNPQAPQLRFTEQN 600



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           + C  C    CV  CP +          I    C     C   C V  AI+ + E  ++
Sbjct: 195 DLCTRCN--ACVTACPENAIGLD---YQIDMTACTGHRDCVKACAVAGAIRFEREAEVQ 248



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP +AI  D +  +
Sbjct: 192 IDLDLCTRCNACVTACPENAIGLDYQIDM 220


>gi|52549592|gb|AAU83441.1| archaeal flavoproteins [uncultured archaeon GZfos28G7]
          Length = 267

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y +  + C  C   +  + C  D  Y G     I   +C  CG+C   CP DAI
Sbjct: 153 MPYSIDRDKCRGCDDCELRDSCEKDAIY-GAPIPQIDLLQCDGCGLCRELCPYDAI 207


>gi|327401481|ref|YP_004342320.1| cobyrinic acid ac-diamide synthase [Archaeoglobus veneficus SNP6]
 gi|327316989|gb|AEA47605.1| Cobyrinic acid ac-diamide synthase [Archaeoglobus veneficus SNP6]
          Length = 270

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V +  C LC    C EVC  +     ++ + I P+ C  CG C   CP +AI
Sbjct: 60  VDSAKCTLCG--KCREVCQYNAIVVLKDSVVIFPEICHSCGACSYFCPEEAI 109


>gi|327401439|ref|YP_004342278.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316947|gb|AEA47563.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 780

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 23/78 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE---GENF---------------LAIHPDECI---DC 43
           VT+ C  C   +CV+ CP +   E   G +                  I  + C     C
Sbjct: 222 VTDACTACG--ECVKACPAERPNEFNYGMDKTKAIYLPHEMSFPMKYVIDAEYCQKNEGC 279

Query: 44  GVCEPECPVDAIKPDTEP 61
             C   CP DAI    EP
Sbjct: 280 KACVDACPYDAIDLAMEP 297



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECP 51
           + C  CK   C E CP     E E    I +P  C  CG C   CP
Sbjct: 573 QRCTQCK--RCTEECPFSALEEDERGTPILNPARCRRCGTCFGACP 616


>gi|308272512|emb|CBX29116.1| hypothetical protein N47_J00970 [uncultured Desulfobacterium sp.]
          Length = 822

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           C  C    C  +CP +     +N+   I  D C  CG+C   CP +AI
Sbjct: 641 CARCL--TCYRICPHNAVTIRDNYQPVISTDACFGCGICVSHCPANAI 686


>gi|291557571|emb|CBL34688.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 593

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI CK   C+    CP       +  + I  + C  C +C   CPV+AI
Sbjct: 539 ISDKCIQCK--KCIREIGCP--ALIVADGKVTIDNNLCTGCKLCAQICPVNAI 587


>gi|294634352|ref|ZP_06712890.1| nitrate reductase, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291092249|gb|EFE24810.1| nitrate reductase, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 518

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y   E+ +  I+ D+C    +C   CP   I  + + G
Sbjct: 195 CEHCLNPACVASCPSGAIYKRAEDGVVLINQDQCRGWRMCVSACPYKKIYYNWKSG 250


>gi|255019946|ref|ZP_05292020.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970605|gb|EET28093.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
          Length = 173

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C+   C  VCP  C   EG++            I+   CI CG+CE  CP  AI+
Sbjct: 53  ERCVACEL--CSAVCPTQCIELEGDDRPDGRRYARTFRINFSRCIYCGLCEEACPTLAIQ 110

Query: 57  PDTE 60
              E
Sbjct: 111 LLEE 114


>gi|298490559|ref|YP_003720736.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          ['Nostoc azollae' 0708]
 gi|298232477|gb|ADI63613.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein ['Nostoc
          azollae' 0708]
          Length = 112

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPV- 52
          M Y +T  CI CK   C+ VCP       +   +I  + C +C         C+  CP  
Sbjct: 1  MAYKITAACISCK--RCLSVCPTGAVKILDGNHSIDSELCTNCAGGIYTVPQCKAVCPTV 58

Query: 53 -DAIKPDTEPGLELWLKINSEYAT 75
             +K  ++     ++K N   A 
Sbjct: 59 DGCVKEPSDYWEGWFVKYNRVIAK 82


>gi|149927549|ref|ZP_01915803.1| NADH dehydrogenase subunit I [Limnobacter sp. MED105]
 gi|149823822|gb|EDM83048.1| NADH dehydrogenase subunit I [Limnobacter sp. MED105]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPAMAITIESEQREDGTRRTSRYDIDLTKCIFCGFCEESCPVDSI 118



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 62 ERCIACKLCEAVCPAMAITIESEQRED 88


>gi|11499056|ref|NP_070290.1| iron-sulfur cluster binding protein, putative [Archaeoglobus
          fulgidus DSM 4304]
 gi|2649108|gb|AAB89787.1| iron-sulfur cluster binding protein, putative [Archaeoglobus
          fulgidus DSM 4304]
          Length = 77

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 9  CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI C    CVEVCP D F  EG   +  +P++C  C +C   CPVDAI
Sbjct: 17 CIGCG--TCVEVCPTDVFRLEGGRAVIKYPEDCQICHLCRLYCPVDAI 62


>gi|114567049|ref|YP_754203.1| MinD family protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337984|gb|ABI68832.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 288

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            ++  E+CI C    C+E+C  D      +   + P  C  CG CE  CPV+AI
Sbjct: 61  AHIDEESCISCGL--CMELCRFDAIS---SEYQVLPLFCEGCGFCEKICPVEAI 109



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPD 58
           I  + CI CG+C   C  DAI  +
Sbjct: 62 HIDEESCISCGLCMELCRFDAISSE 86


>gi|332090809|gb|EGI95901.1| hypothetical protein SB521682_1815 [Shigella boydii 5216-82]
          Length = 184

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E     +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQ 99


>gi|325299039|ref|YP_004258956.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318592|gb|ADY36483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 311

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +VVT+ CI C    C EVCP   +            +C  C  C   CP  AIK    P 
Sbjct: 224 FVVTDACIGC--AVCTEVCPRGNYELTSTG-VKTKGDCDFCFACIQNCPQKAIKFAELPD 280


>gi|320355404|ref|YP_004196743.1| hydrogenase 2 protein HybA [Desulfobulbus propionicus DSM 2032]
 gi|320123906|gb|ADW19452.1| hydrogenase 2 protein HybA [Desulfobulbus propionicus DSM 2032]
          Length = 343

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            V ++C+ C    CV VCPV    +  +   +  + + C  C  C+  CP      + E
Sbjct: 126 FVKQHCLHCLEPACVSVCPVAALQKQPDTGIVTYNKNRCFGCRYCQIACPFGIPAYEWE 184


>gi|269140614|ref|YP_003297315.1| hypothetical protein ETAE_3273 [Edwardsiella tarda EIB202]
 gi|267986275|gb|ACY86104.1| hypothetical protein ETAE_3273 [Edwardsiella tarda EIB202]
 gi|304560401|gb|ADM43065.1| NrfC-like protein [Edwardsiella tarda FL6-60]
          Length = 211

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C    C EVCP    Y   + L  I    C  CG C   CP  A
Sbjct: 88  CQHCDPAPCQEVCPSQATYRDAHGLIQIDARRCSGCGYCIRACPYQA 134


>gi|218662859|ref|ZP_03518789.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli IE4771]
          Length = 165

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 9  CILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
          C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 45 CVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 99


>gi|212224715|ref|YP_002307951.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
 gi|212009672|gb|ACJ17054.1| 4Fe-4S cluster-binding protein [Thermococcus onnurineus NA1]
          Length = 166

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
          NC  C+   CVEVCP +  Y  ++   +  P +CI C +C   CP    + D 
Sbjct: 47 NCRHCEKAPCVEVCPTNALYRDKDGAVLLAPQKCIGCLMCGIVCPFGIPELDL 99


>gi|206577903|ref|YP_002238214.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           pneumoniae 342]
 gi|288935202|ref|YP_003439261.1| electron transport complex, RnfABCDGE type subunit beta [Klebsiella
           variicola At-22]
 gi|290509260|ref|ZP_06548631.1| electron transport complex protein rnfB [Klebsiella sp. 1_1_55]
 gi|226735421|sp|B5XWQ0|RNFB_KLEP3 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|206566961|gb|ACI08737.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           pneumoniae 342]
 gi|288889911|gb|ADC58229.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           variicola At-22]
 gi|289778654|gb|EFD86651.1| electron transport complex protein rnfB [Klebsiella sp. 1_1_55]
          Length = 192

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           M  V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CP   I
Sbjct: 108 MLAVIDEPNCIGC--TKCIQACPVDAIVGATRAMHTVMNDLCTGCNLCVAPCPTQCI 162


>gi|167760574|ref|ZP_02432701.1| hypothetical protein CLOSCI_02948 [Clostridium scindens ATCC 35704]
 gi|167661795|gb|EDS05925.1| hypothetical protein CLOSCI_02948 [Clostridium scindens ATCC 35704]
          Length = 426

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 8   NCILCKH-TDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPEC 50
            C  C +   C   C  D   EGE+  L I+P  C  CGVC   C
Sbjct: 61  ECEECAYERACQRSCIFDAIEEGEDGKLRINPSLCTGCGVCMDAC 105


>gi|167751205|ref|ZP_02423332.1| hypothetical protein EUBSIR_02191 [Eubacterium siraeum DSM 15702]
 gi|167655712|gb|EDR99841.1| hypothetical protein EUBSIR_02191 [Eubacterium siraeum DSM 15702]
          Length = 577

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++  + C  CK   C+ + CP      G+  + I    C+ CG+CE  C  DAIK 
Sbjct: 526 HIDADKCKNCK--SCMRIGCP--ALVSGDKCITIDNTLCVGCGLCEQLCKFDAIKE 577


>gi|153005506|ref|YP_001379831.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029079|gb|ABS26847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 740

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI      C+  CP        +G   L  H D CI  G C  ECPV AI+
Sbjct: 59  DICIG--SLSCLRACPEGDILGVVDGAARLV-HGDHCIGHGRCAAECPVGAIR 108


>gi|161521139|ref|YP_001584566.1| formate dehydrogenase, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189352683|ref|YP_001948310.1| formate dehydrogenase beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|160345189|gb|ABX18274.1| formate dehydrogenase, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189336705|dbj|BAG45774.1| formate dehydrogenase beta subunit [Burkholderia multivorans ATCC
           17616]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|117923999|ref|YP_864616.1| electron transport complex, RnfABCDGE type subunit beta
           [Magnetococcus sp. MC-1]
 gi|226735422|sp|A0L5G7|RNFB_MAGSM RecName: Full=Electron transport complex protein rnfB
 gi|117607755|gb|ABK43210.1| electron transport complex, RnfABCDGE type, B subunit
           [Magnetococcus sp. MC-1]
          Length = 181

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            Y+  E CI C  T C++VCPVD            I   EC  C +C   CP D I    
Sbjct: 103 AYIDEEACIGC--TACIKVCPVDAIVGANKQSHTVIVA-ECTSCQLCLEPCPTDCITMQP 159

Query: 60  EPG 62
            P 
Sbjct: 160 VPE 162



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 16/36 (44%)

Query: 20  VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V P     EG     I  + CI C  C   CPVDAI
Sbjct: 90  VSPAAMDDEGPKVAYIDEEACIGCTACIKVCPVDAI 125


>gi|332284974|ref|YP_004416885.1| hypothetical protein PT7_1721 [Pusillimonas sp. T7-7]
 gi|330428927|gb|AEC20261.1| hypothetical protein PT7_1721 [Pusillimonas sp. T7-7]
          Length = 209

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           V+ E  CI C  T C++ CPVD        +  +  ++C  C +C   CPVD I
Sbjct: 80  VIDEAHCIGC--TLCIQACPVDAIVGANKLMHTVLTEDCTGCDLCVAPCPVDCI 131



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYE 28
           M  V+TE+C  C    CV  CPVDC   
Sbjct: 108 MHTVLTEDCTGCDL--CVAPCPVDCISM 133


>gi|237808819|ref|YP_002893259.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tolumonas auensis DSM 9187]
 gi|237501080|gb|ACQ93673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tolumonas
          auensis DSM 9187]
          Length = 84

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++TE C  C    C   CP    Y G+    I PD C +C        C   CP++ 
Sbjct: 1  MALLITEACTNCD--MCEPECPNQAIYMGDKVYEIMPDRCTECVGFYEEPTCVRVCPINC 58

Query: 55 IKPDTEPGLELWLKINSEYA 74
          I  D          +N   +
Sbjct: 59 IISDPAHPESELELLNKFIS 78


>gi|145632430|ref|ZP_01788165.1| uridylate kinase [Haemophilus influenzae 3655]
 gi|148828228|ref|YP_001292981.1| uridylate kinase [Haemophilus influenzae PittGG]
 gi|144987337|gb|EDJ93867.1| uridylate kinase [Haemophilus influenzae 3655]
 gi|148719470|gb|ABR00598.1| uridylate kinase [Haemophilus influenzae PittGG]
          Length = 225

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 139


>gi|15678874|ref|NP_275991.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621946|gb|AAB85352.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 128

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    CV +CPV      +++ + +   +CI C  C   CP  AI
Sbjct: 77  EKCMDCG--ACVSLCPVGAICIEDDWEIVLDDRKCIGCSFCVNSCPTKAI 124



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
            ++C+DCG C   CPV AI  + +
Sbjct: 75 DREKCMDCGACVSLCPVGAICIEDD 99


>gi|320100269|ref|YP_004175861.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752621|gb|ADV64379.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           +  +C+ C    C++VCP        +  + +   +CI C  C   CP    + D
Sbjct: 48  IPVSCMHCAKAPCIDVCPTGAMTRDSDGAVYVAASKCIGCMACLYACPFGIPELD 102


>gi|260892290|ref|YP_003238387.1| glutamate synthase alpha subunit domain protein [Ammonifex degensii
           KC4]
 gi|260864431|gb|ACX51537.1| glutamate synthase alpha subunit domain protein [Ammonifex degensii
           KC4]
          Length = 635

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 9   CILCKHTDCVEVCPVDCFY---EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    C+ +CP        EG  +     P  CI CG C   CP      +  P  E
Sbjct: 578 CRDCG--ICLNICPQQAITRHQEGNGWRYEADPQRCIGCGFCADACPCGV--WELRPNQE 633

Query: 65  L 65
            
Sbjct: 634 P 634


>gi|187923233|ref|YP_001894875.1| ferredoxin [Burkholderia phytofirmans PsJN]
 gi|187714427|gb|ACD15651.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           phytofirmans PsJN]
          Length = 279

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I
Sbjct: 89  CIGC--TLCMQACPVDAIVGAPKQMHTVIVELCTGCDLCVPPCPVDCI 134



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 83  VIDEQVCIGCTLCMQACPVDAI 104


>gi|120600678|ref|YP_965252.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|146291421|ref|YP_001181845.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|120560771|gb|ABM26698.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
 gi|145563111|gb|ABP74046.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
 gi|319428348|gb|ADV56422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 228

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C+   CV VCP       +    +++   +C+ C  C   CP     I P T    
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPYQVRFIHPVTRAAD 155

Query: 64  E 64
           +
Sbjct: 156 K 156


>gi|125973131|ref|YP_001037041.1| thiamine pyrophosphate enzyme-like TPP-binding [Clostridium
           thermocellum ATCC 27405]
 gi|125713356|gb|ABN51848.1| thiamine pyrophosphate enzyme-like TPP-binding protein [Clostridium
           thermocellum ATCC 27405]
          Length = 601

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V E C  CK   C+ + CP     +  + + I+   C+ CG+C   C  DAI+
Sbjct: 548 IVIEKCRKCK--MCMRIGCP--AIVDMGDHIEINDALCVGCGLCSKVCNFDAIE 597


>gi|332296568|ref|YP_004438491.1| NAD(P)H-quinone oxidoreductase subunit I [Thermodesulfobium
           narugense DSM 14796]
 gi|332179671|gb|AEE15360.1| NAD(P)H-quinone oxidoreductase subunit I [Thermodesulfobium
           narugense DSM 14796]
          Length = 192

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENF--------LAIHPDECIDCGVCEPECPVDA 54
           E CI+C    C  VCP +C     G++          +I    CI CG C   CPV+A
Sbjct: 61  ERCIMCL--RCKTVCPSNCIKVEVGKDENNARVLKEYSIDATRCIYCGYCVEVCPVNA 116



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI 35
           CI C +  CVEVCPV+     E +  +
Sbjct: 102 CIYCGY--CVEVCPVNALVLTEEYEYL 126


>gi|320181304|gb|EFW56223.1| NrfC-like protein [Shigella boydii ATCC 9905]
 gi|332093965|gb|EGI99018.1| hypothetical protein SD15574_1818 [Shigella dysenteriae 155-74]
          Length = 184

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +  E     +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDEQGSVRVEKSQCIGCSYCIGACPYQ 99


>gi|258513853|ref|YP_003190075.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257777558|gb|ACV61452.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 55

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V  E CI C    C +VCPV      +    I  DEC++CG C  ECP +AI
Sbjct: 3  ALVNKEKCIGCGQ--CEDVCPVGAIKLEDGKAVI-SDECVECGTCVEECPNEAI 53



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          ++ ++CI CG CE  CPV AIK + 
Sbjct: 5  VNKEKCIGCGQCEDVCPVGAIKLED 29


>gi|198284463|ref|YP_002220784.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667334|ref|YP_002427130.1| iron-sulfur cluster-binding protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
 gi|198248984|gb|ACH84577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519547|gb|ACK80133.1| iron-sulfur cluster-binding protein [Acidithiobacillus
          ferrooxidans ATCC 23270]
          Length = 83

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++ + CI C    C   CP +    G     I P  C +C        C+  CPVD 
Sbjct: 1  MSLLINDQCINCDV--CEPECPNNAISMGARIYVIDPGLCTECVGHYDTPQCKEVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D +     
Sbjct: 59 IVSDPDHAESP 69


>gi|254168947|ref|ZP_04875786.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|197622053|gb|EDY34629.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
          Length = 292

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPG 62
            +T+ CI C    C  +C  +  Y       I    C  CG C+  CPV DAI  D    
Sbjct: 64  TITDKCINCGV--CDNICIYEAIYIESGQHKIKEYLCEGCGACKAVCPVEDAIIIDDTVS 121

Query: 63  LELWLKI-NSEY 73
              W++I N++Y
Sbjct: 122 --GWIRIANTKY 131


>gi|323699739|ref|ZP_08111651.1| cobyrinic acid ac-diamide synthase [Desulfovibrio sp. ND132]
 gi|323459671|gb|EGB15536.1| cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           ND132]
          Length = 292

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C    C E+C  D   E  +   ++   C  C VC   CP  AI    +   + +
Sbjct: 66  ERCIGCGQ--CAELCRFDAVREDGDVYRVNSLACEGCKVCVALCPEKAIDFPEKHCGQWY 123

Query: 67  L 67
           +
Sbjct: 124 V 124



 Score = 40.9 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPD 58
           I P+ CI CG C   C  DA++ D
Sbjct: 62 VIDPERCIGCGQCAELCRFDAVRED 86


>gi|281178744|dbj|BAI55074.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE15]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK + C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKESQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|90414273|ref|ZP_01222252.1| formate-dependent nitrite reductase [Photobacterium profundum 3TCK]
 gi|90324611|gb|EAS41158.1| formate-dependent nitrite reductase [Photobacterium profundum 3TCK]
          Length = 225

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C++  CV VCP       +    + ++P+ C+ C  C   CP 
Sbjct: 93  SCQHCENPSCVNVCPTGASYIDKETGIVDVNPERCVGCQYCIAACPY 139


>gi|83646717|ref|YP_435152.1| nitrate reductase subunit beta [Hahella chejuensis KCTC 2396]
 gi|83634760|gb|ABC30727.1| nitrate reductase, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 510

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSG 238


>gi|282643|pir||A42960 ferredoxin 2[4Fe-4S] - Methanosarcina thermophila
 gi|189094593|gb|ACD76070.1| FdxA [Methanosarcina thermophila TM-1]
          Length = 60

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
            V  + C  C    CV+ CP +     E      +  DEC++CG CE  CP  AIK + 
Sbjct: 3  ALVNADECSGCG--SCVDECPSEAITLDEEKGIAVVDQDECVECGACEEACPNQAIKVEE 60



 Score = 33.6 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ DEC  CG C  ECP +AI  D E G
Sbjct: 5  VNADECSGCGSCVDECPSEAITLDEEKG 32


>gi|118580368|ref|YP_901618.1| cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
 gi|118503078|gb|ABK99560.1| Cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
          Length = 305

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + +CI C    C   C  D         GE   +I P  C  CGVC   CPV  I
Sbjct: 77  VILQSDCIGCGV--CRRWCRFDAVNMEKNDRGETVFSIDPASCEGCGVCVRFCPVQVI 132


>gi|332298930|ref|YP_004440852.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
 gi|332182033|gb|AEE17721.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
          Length = 584

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y     C  C    C+  CPV           I  + CI CG C   CP  A
Sbjct: 8  YTEQTECQDC--YKCIRRCPVKAIRVENGHAKIISELCIVCGRCVINCPAHA 57


>gi|330446984|ref|ZP_08310635.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491175|dbj|GAA05132.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 333

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 7   ENCILCKHTDCVEVC---PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    CV  C    V+C             +CI CG C   CP  A     +P  
Sbjct: 178 ERCIGCG--ACVRACQHHAVNCLSLKNGKAVKEESKCIGCGECVLACPTLA--WQRDPKQ 233

Query: 64  ELWLKINSEYATQWPNI 80
              +K+    + + P +
Sbjct: 234 LYMVKLGGRTSKKTPRV 250



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 8/38 (21%)

Query: 21  CPVDC--------FYEGENFLAIHPDECIDCGVCEPEC 50
           CP DC           G   +   P+ CI CG C   C
Sbjct: 153 CPNDCAKANMADFGILGIAKINFTPERCIGCGACVRAC 190


>gi|325528116|gb|EGD05317.1| formate dehydrogenase, beta subunit [Burkholderia sp. TJI49]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|323698993|ref|ZP_08110905.1| glycyl-radical enzyme activating protein family [Desulfovibrio
          sp. ND132]
 gi|323458925|gb|EGB14790.1| glycyl-radical enzyme activating protein family [Desulfovibrio
          desulfuricans ND132]
          Length = 298

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
          C  C    C   CP        N      P++C DCG C   CP  A
Sbjct: 55 CTGCG--ACETACPNGAVTRLRNGKFGRDPEQCTDCGACASVCPSGA 99



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 40 CIDCGVCEPECPVDAI 55
          C  CG CE  CP  A+
Sbjct: 55 CTGCGACETACPNGAV 70


>gi|262381167|ref|ZP_06074305.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|262296344|gb|EEY84274.1| ferredoxin [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGCG--KCAKECPFEAITVTNNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DCV  C  D  +         +  ++C  CG C   CP   I+
Sbjct: 142 GYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKACPKSIIE 187


>gi|302876987|ref|YP_003845620.1| nitroreductase [Clostridium cellulovorans 743B]
 gi|307687678|ref|ZP_07630124.1| nitroreductase [Clostridium cellulovorans 743B]
 gi|302579844|gb|ADL53856.1| nitroreductase [Clostridium cellulovorans 743B]
          Length = 273

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M  V  E CI C    C++ C P D     +    I  + C  CG C   CP +A+  D 
Sbjct: 1  MMKVNAEKCIGCGQ--CIKDCFPRD-IEMVDGKAIIKNEACFKCGHCIAVCPKEAVSTDE 57


>gi|224585846|ref|YP_002639645.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224470374|gb|ACN48204.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 300

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CPV+    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPVEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|307153500|ref|YP_003888884.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Cyanothece sp. PCC 7822]
 gi|306983728|gb|ADN15609.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Cyanothece
          sp. PCC 7822]
          Length = 129

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M+Y +T NCI C    C   CP     + +  L I    C DC G      C   CP +
Sbjct: 1  MSYTITNNCIGCD--RCYVQCPTGAIQKVDGLLLIDSTLCNDCVGYHGTPQCASICPTN 57


>gi|197285067|ref|YP_002150939.1| ferredoxin [Proteus mirabilis HI4320]
 gi|227355471|ref|ZP_03839867.1| polyferredoxin [Proteus mirabilis ATCC 29906]
 gi|194682554|emb|CAR42571.1| putative ferredoxin [Proteus mirabilis HI4320]
 gi|227164458|gb|EEI49342.1| polyferredoxin [Proteus mirabilis ATCC 29906]
          Length = 294

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 4  VVTENCILCKHT-----DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++ + C+  +        C +VCPVD        + I  + C  CG C   CPVDAI+
Sbjct: 14 IINDKCVRKRLKQSLCDSCSKVCPVDAITFSLLNVEIDNERCFQCGNCLFTCPVDAIE 71



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           E+CILC  + C +VC        +N   I    C  C  C+  C
Sbjct: 197 ESCILC--SACAKVCDEGAITIEDNRFIIDEKRCTGCMNCQVVC 238


>gi|190347874|gb|EDK40226.2| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 607

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 11 VSTDRCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDA 69

Query: 55 I 55
          I
Sbjct: 70 I 70


>gi|189467233|ref|ZP_03016018.1| hypothetical protein BACINT_03618 [Bacteroides intestinalis DSM
           17393]
 gi|189435497|gb|EDV04482.1| hypothetical protein BACINT_03618 [Bacteroides intestinalis DSM
           17393]
          Length = 369

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C    C   CP     +G+    I  ++CI C  C   C   A   DT 
Sbjct: 297 VNAELCTHCGV--CAVHCPSGAILKGDECNTI-AEKCIKCCACVKGCSFKARTYDTP 350



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                ++ + C  CGVC   CP  AI    E
Sbjct: 292 PRVPEVNAELCTHCGVCAVHCPSGAILKGDE 322


>gi|281357901|ref|ZP_06244386.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
 gi|281315559|gb|EFA99587.1| glycyl-radical enzyme activating protein family [Victivallis
           vadensis ATCC BAA-548]
          Length = 305

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +     C+ C    C  VCP  C              C  CG+C   CP  A++
Sbjct: 55  FFTPSRCVGCG--ACFTVCPASCHRMENKMHLFDRKRCTQCGICAANCPAGALE 106


>gi|146415250|ref|XP_001483595.1| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC
          6260]
          Length = 607

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 11 VSTDRCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDA 69

Query: 55 I 55
          I
Sbjct: 70 I 70


>gi|150020392|ref|YP_001305746.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermosipho melanesiensis BI429]
 gi|149792913|gb|ABR30361.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermosipho melanesiensis BI429]
          Length = 519

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y+++ +   CK+   C+  CPV      EN   +  ++CI CG C   CP +A
Sbjct: 4  YIISND-ANCKYCYKCLRNCPVKSISFSENKSIVIDEQCIVCGTCIEICPQNA 55


>gi|158320134|ref|YP_001512641.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alkaliphilus oremlandii OhILAs]
 gi|158140333|gb|ABW18645.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alkaliphilus oremlandii OhILAs]
          Length = 364

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C      +C+E CP     + +    I  + CI CG+C+ +CP  +I
Sbjct: 31 DPCN-----NCIESCPTAAIVKRDQAFVIEDELCIGCGICKVKCPSQSI 74



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           YVV  +C  C +  C  +CP       E E    L+ +   C  CG C   CP  AI+
Sbjct: 252 YVVNSSCNGCNY--CEAICPYKAWKIEETEEIYTLSFNTGRCRSCGQCIKTCPQKAIE 307


>gi|107026726|ref|YP_624237.1| formate dehydrogenase, beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|116692081|ref|YP_837614.1| formate dehydrogenase, beta subunit [Burkholderia cenocepacia
           HI2424]
 gi|170735925|ref|YP_001777185.1| formate dehydrogenase, beta subunit [Burkholderia cenocepacia
           MC0-3]
 gi|254248681|ref|ZP_04942001.1| Formate dehydrogenase, beta subunit [Burkholderia cenocepacia
           PC184]
 gi|105896100|gb|ABF79264.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia cenocepacia AU 1054]
 gi|116650081|gb|ABK10721.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia cenocepacia HI2424]
 gi|124875182|gb|EAY65172.1| Formate dehydrogenase, beta subunit [Burkholderia cenocepacia
           PC184]
 gi|169818113|gb|ACA92695.1| formate dehydrogenase, beta subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|57242714|ref|ZP_00370651.1| ferredoxin [Campylobacter upsaliensis RM3195]
 gi|57016643|gb|EAL53427.1| ferredoxin [Campylobacter upsaliensis RM3195]
          Length = 81

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++C+ C    C E CP D   E      I PD C +C        C   CP + 
Sbjct: 1  MSLLITKDCVCCD--ACREECPDDAICENSPIYVIDPDLCSECVNDFSEPACIVACPYEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|321455606|gb|EFX66734.1| hypothetical protein DAPPUDRAFT_189585 [Daphnia pulex]
          Length = 610

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 11/56 (19%)

Query: 11 LCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           CK   C + C   C               +    I    CI CG+C  +CP +AI
Sbjct: 25 KCKPKRCRQECKKSCPVVRMGKLCIEVAPTDRIAVISETLCIGCGICVKKCPFEAI 80


>gi|319898890|ref|YP_004158983.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73]
 gi|319402854|emb|CBI76405.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|284161525|ref|YP_003400148.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus profundus DSM 5631]
 gi|284011522|gb|ADB57475.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus profundus DSM 5631]
          Length = 617

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + + + +N C  C     V  CP    Y       I P  C  CGVC   CP  AIK
Sbjct: 559 LPFEILQNKCNNCGECYRVFSCP--AIYLDGEKPQIDPALCTSCGVCARICPERAIK 613


>gi|225390043|ref|ZP_03759767.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme
           DSM 15981]
 gi|225043920|gb|EEG54166.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme
           DSM 15981]
          Length = 212

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           Y +TE+C  C    C+  CP +C         I  + C+ CG C   CP  A
Sbjct: 157 YHITEDCDGCGL--CLSQCPQNCIDSSRTPFKIQAEHCLHCGNCVEICPQKA 206


>gi|206562873|ref|YP_002233636.1| formate dehydrogenase iron-sulfur subunit [Burkholderia cenocepacia
           J2315]
 gi|198038913|emb|CAR54875.1| formate dehydrogenase, iron-sulfur subunit [Burkholderia
           cenocepacia J2315]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|15806509|ref|NP_295220.1| NADH dehydrogenase I subunit I [Deinococcus radiodurans R1]
 gi|81789326|sp|Q9RU95|NUOI_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|6459254|gb|AAF11060.1|AE001993_10 NADH dehydrogenase I, I subunit [Deinococcus radiodurans R1]
          Length = 178

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 52  EKCIGC--SLCAAACPAYAIYVEAAENDPRDPVSPGERYAKVYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  +  +
Sbjct: 110 PTGAVVLGNEFEMADY 125


>gi|51246923|ref|YP_066807.1| molybdopterin oxidoreductase [Desulfotalea psychrophila LSv54]
 gi|50877960|emb|CAG37800.1| probable molybdopterin oxidoreductase [Desulfotalea psychrophila
          LSv54]
          Length = 154

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 9  CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          C  C++  CV VCP       E    + +    CI C  C   CP  A   + E      
Sbjct: 14 CNHCENPPCVRVCPTKATFIEEHNGIVEMDYHRCIGCRFCMVACPYGARSFNWEDPRPHI 73

Query: 67 LKINSEYATQWPNITTKK 84
           + N E+ T+   +  K 
Sbjct: 74 KEYNHEFPTRMRGVVEKC 91


>gi|127511175|ref|YP_001092372.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636470|gb|ABO22113.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 181

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDT 59
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A  I+ D 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYAAVSIREDD 114


>gi|325289323|ref|YP_004265504.1| nitroreductase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964724|gb|ADY55503.1| nitroreductase [Syntrophobotulus glycolicus DSM 8271]
          Length = 276

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          V  E CI C    CV+VC       G     +  D CI CG C   CP  A
Sbjct: 9  VNQEQCIKCGL--CVKVCRGTLGMGGHGPEVVD-DFCIACGHCVAVCPNGA 56


>gi|325264740|ref|ZP_08131469.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium sp. D5]
 gi|324030032|gb|EGB91318.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium sp. D5]
          Length = 602

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++C  CK       CP     +G   + + P  C  CG+C   CP  AI
Sbjct: 549 DSCTKCKVCISQLGCPAIAVNDGA--VVVEPSLCYGCGLCSQVCPSGAI 595


>gi|271500635|ref|YP_003333660.1| RnfABCDGE type electron transport complex subunit B [Dickeya
           dadantii Ech586]
 gi|270344190|gb|ACZ76955.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya
           dadantii Ech586]
          Length = 196

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           NCI C  T C++ CPVD        +  +  D C  C +C   CP D I
Sbjct: 115 NCIGC--TKCIQACPVDAIIGSTRAVHTVIRDLCTGCNLCVAPCPTDCI 161



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 111 IDEANCIGCTKCIQACPVDAI 131


>gi|221196912|ref|ZP_03569959.1| formate dehydrogenase, beta subunit [Burkholderia multivorans
           CGD2M]
 gi|221203582|ref|ZP_03576601.1| formate dehydrogenase, beta subunit [Burkholderia multivorans CGD2]
 gi|221212504|ref|ZP_03585481.1| formate dehydrogenase, beta subunit [Burkholderia multivorans CGD1]
 gi|221167603|gb|EEE00073.1| formate dehydrogenase, beta subunit [Burkholderia multivorans CGD1]
 gi|221177516|gb|EEE09944.1| formate dehydrogenase, beta subunit [Burkholderia multivorans CGD2]
 gi|221183466|gb|EEE15866.1| formate dehydrogenase, beta subunit [Burkholderia multivorans
           CGD2M]
          Length = 302

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 96  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 147


>gi|217077037|ref|YP_002334753.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosipho africanus TCF52B]
 gi|217036890|gb|ACJ75412.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosipho africanus TCF52B]
          Length = 642

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V T+ C  CK       CP   F++ EN  A I P  C  CG C   CP  A +   E  
Sbjct: 584 VNTDKCTGCKTCIVTFGCPA-IFWDAENKKAKIDPTMCWGCGSCAQVCPFGAFELVKEAE 642


>gi|212634955|ref|YP_002311480.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212556439|gb|ACJ28893.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 181

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDT 59
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A  I+ D 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCASACPYSAVSIREDD 114


>gi|209519639|ref|ZP_03268429.1| ferredoxin [Burkholderia sp. H160]
 gi|209499925|gb|EDZ99990.1| ferredoxin [Burkholderia sp. H160]
          Length = 82

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAIKPD 58
          +T+ CI C    C   CP D    G     I P +C +C        C   CPV+ I  D
Sbjct: 2  ITDECINCDV--CEPECPNDAISMGPEIYVIDPKKCTECVGHFDEPQCIQVCPVECIPRD 59


>gi|197106271|ref|YP_002131648.1| Polyferredoxin [Phenylobacterium zucineum HLK1]
 gi|196479691|gb|ACG79219.1| Polyferredoxin [Phenylobacterium zucineum HLK1]
          Length = 508

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 16/73 (21%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV  CP+         L     ECI+CG+C   C         P   I  D
Sbjct: 293 DCIDCN--ACVVACPMGIDIRNGAQL-----ECINCGLCIDACDEIMVKVGRPKGLIFYD 345

Query: 59  TEPGLELWLKINS 71
           T+  +    K N+
Sbjct: 346 TDSAVAERQKGNA 358


>gi|163751853|ref|ZP_02159068.1| NADH dehydrogenase subunit I [Shewanella benthica KT99]
 gi|161328269|gb|EDP99431.1| NADH dehydrogenase subunit I [Shewanella benthica KT99]
          Length = 171

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPVDC      E  +         I+   CI CG CE  CP  AI+
Sbjct: 49  ERCVACNL--CSVACPVDCISVEKTEKPDGRWEAKTFTINFSRCIMCGFCEEACPTHAIQ 106

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKK 84
              +  +  + + N  Y      I    
Sbjct: 107 LTPDFEMAEYDRQNLVYEKHHLLIAGPG 134


>gi|91065090|gb|ABE03922.1| NuoI [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 145

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 52  EKCIGC--SLCAAACPAYAIYVEAAENDPEAPVSAGERYASIYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  AI    E  L  +
Sbjct: 110 PTGAIVLGHEFELADF 125


>gi|78189908|ref|YP_380246.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           chlorochromatii CaD3]
 gi|78172107|gb|ABB29203.1| dissimilatory sulfite reductase beta subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 363

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 209 CELPKAVARCPVAAIRPTVINGKRSLMVDEAKCICCGACFGACPAMEINHPEHSKFAVWV 268


>gi|55980358|ref|YP_143655.1| polyferredoxin [Thermus thermophilus HB8]
 gi|55771771|dbj|BAD70212.1| polyferredoxin [Thermus thermophilus HB8]
          Length = 315

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY---EGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V E C LC    C  VCP +      EGE + L +    C  CG C   CP   I+ +  
Sbjct: 237 VEEGCTLC--PVCTNVCPTEAVRRVREGEEYVLYLQVAACTGCGACVESCPPQVIRLEEA 294

Query: 61  PGLE 64
           P  E
Sbjct: 295 PKEE 298



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          C  VCP          + +    C  CG+C   CP  A++       E  +
Sbjct: 39 CYGVCPKGAVRLEGWRVELDEVLCTGCGLCTGVCPGIALEYPLGAIQEALI 89


>gi|349971|prf||0308230A ferredoxin
          Length = 82

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58
          +T+ CI C    C   CP     +G+    I P  C +C        C   CPVD I  D
Sbjct: 4  ITDQCINCNV--CQPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCIIKD 61



 Score = 33.6 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          D+CI+C VC+PECP  AI    E
Sbjct: 6  DQCINCNVCQPECPNGAISQGDE 28


>gi|159115416|ref|XP_001707931.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803]
 gi|157436039|gb|EDO80257.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803]
          Length = 264

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
          T+ C  C    CVEVCP            +   + D CI CG C   CP ++I
Sbjct: 10 TDTCTGCN--MCVEVCPTAVLKVDPETKVVAYANRDNCIFCGHCGAICPTESI 60


>gi|317489675|ref|ZP_07948179.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911269|gb|EFV32874.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 178

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            V   C+ C++  C +VCP    Y  E+ +  +  ++CI C  C   CP  
Sbjct: 53  TVPVQCMHCENAPCQQVCPTHATYTTESGVVLVDEEKCIGCKYCMAACPYG 103


>gi|294101031|ref|YP_003552889.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
 gi|293616011|gb|ADE56165.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
          Length = 292

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           TE C +C    CV  C  +   +  N + + P +C  CG C   CP  AI   +    + 
Sbjct: 68  TERCTVCGG--CVGFCRFNALEKANNGITLLPWKCEGCGGCALVCPHQAISMHSYEQGQY 125

Query: 66  W 66
           W
Sbjct: 126 W 126


>gi|291531719|emb|CBK97304.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum 70/3]
          Length = 573

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++  + C  CK   C+ + CP      G+  + I    C+ CG+CE  C  DAIK 
Sbjct: 522 HIDADKCKNCK--SCMRIGCP--ALVSGDKCITIDNTLCVGCGLCEQLCKFDAIKE 573


>gi|218705172|ref|YP_002412691.1| hypothetical protein ECUMN_1963 [Escherichia coli UMN026]
 gi|293405172|ref|ZP_06649164.1| hypothetical protein ECGG_00509 [Escherichia coli FVEC1412]
 gi|298380815|ref|ZP_06990414.1| hypothetical protein ECFG_00523 [Escherichia coli FVEC1302]
 gi|300901517|ref|ZP_07119588.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|331663151|ref|ZP_08364061.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
 gi|218432269|emb|CAR13159.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli UMN026]
 gi|291427380|gb|EFF00407.1| hypothetical protein ECGG_00509 [Escherichia coli FVEC1412]
 gi|298278257|gb|EFI19771.1| hypothetical protein ECFG_00523 [Escherichia coli FVEC1302]
 gi|300355047|gb|EFJ70917.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|331058950|gb|EGI30927.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA143]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|297619769|ref|YP_003707874.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus voltae A3]
 gi|297378746|gb|ADI36901.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus voltae A3]
          Length = 569

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          +CI C    C EVCP +   E E     +   +C+ C +CE  CP+  IK   E
Sbjct: 39 SCITCG--KCAEVCPTNAILENEYGGYYVDRKKCVGCAICEKNCPIGIIKMVDE 90



 Score = 40.5 bits (94), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C ++CP DC     ++ AI  ++C  C  C   CP +AIK
Sbjct: 520 DYCVSCGL--CNKICPNDCI----DYGAIDTEKCELCSACANICPTNAIK 563



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVD 53
           NC+LC+   C+  CP D     +    F  I    CI CG C   CP D
Sbjct: 411 NCVLCE--KCITKCPEDAIEIVKREIPFEVIDK-SCIGCGTCAEICPND 456



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C+E+CP +               CI CG C   CP +AI
Sbjct: 19 KKCMELCPTNAIKMIGGTAI----SCITCGKCAEVCPTNAI 55



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 23/71 (32%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA----------IHPDE-----------CIDC 43
           + + CILC  T CV+VCP +        +           I  D            CI+C
Sbjct: 296 IRDGCILC--TSCVQVCPRNVLDVENFKIVNKGKLADNTSIDEDTNNKNNYEPKVYCINC 353

Query: 44  GVCEPECPVDA 54
           G C   CP +A
Sbjct: 354 GACVNVCPNNA 364



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV VCP +     +  +  + + C  C  C   CP
Sbjct: 350 CINCG--ACVNVCPNNALLYKDGRILYNKNNCTLCMECVKACP 390



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           + I  ++CI+C  C  ECP +AI+          +  NS   
Sbjct: 214 IIIDSEKCINCNRCIYECPTNAIELLENLTNNECINSNSMLF 255


>gi|154500042|ref|ZP_02038080.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC
           29799]
 gi|150271132|gb|EDM98401.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC
           29799]
          Length = 387

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V E C+ C    C   CPV           I   +CI C  C   CP  A++
Sbjct: 326 VREACVGCG--ICAASCPVKAITVKNRRARIDTGKCIRCYCCHELCPHKAVE 375


>gi|149911479|ref|ZP_01900095.1| putative nitrite reductase, Fe-S protein (NrfC) [Moritella sp.
           PE36]
 gi|149805443|gb|EDM65451.1| putative nitrite reductase, Fe-S protein (NrfC) [Moritella sp.
           PE36]
          Length = 228

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    + + +  +  +H D+C+ CG C   CP  
Sbjct: 96  SCQHCDNAPCVTVCPTGASYVDLKTGIVDVHSDKCVGCGYCLAACPYQ 143


>gi|134046811|ref|YP_001098296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664436|gb|ABO36082.1| membrane-bound hydrogenase subunit ehbK [Methanococcus maripaludis
           C5]
          Length = 481

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            V   C+LC+   C++ CP D     E   F +I  +ECI CG C   CP DAI
Sbjct: 316 FVNGGCVLCEV--CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAI 367



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          TY   ENC   + + C+EVCP +     +         CI CG C  ECP  AIK
Sbjct: 11 TYEECENCKNKEISKCMEVCPTNAIKMIDGKAF----SCITCGTCAKECPTGAIK 61



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--------CIDCGVCEPECPVDAIK 56
           VTENCILC   +C+  CP D     E  +    ++        CI+CG+C   CP +A++
Sbjct: 225 VTENCILCG--NCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDLCPSNALR 282

Query: 57  PD 58
            +
Sbjct: 283 FE 284



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C+ +CP D   E E       D C  C +C+  CPVDAI
Sbjct: 178 SEKCIECG--KCIYLCPKDTIIESETV-----DGCTRCNICKEVCPVDAI 220



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
          +CI C    C + CP     + E     ++   C  CG+C+  CP+D I
Sbjct: 44 SCITCG--TCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDII 90



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ C+ C    C  +CP D   +GE    I+ ++C  C  C   CP  AI+
Sbjct: 427 SDYCVKCGL--CTIICPNDAIDKGE----INTEKCEYCSACVNICPTRAIR 471



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV++CP +        +   P  C  C  C  ECP
Sbjct: 266 CINCGL--CVDLCPSNALRFENGKILYDPKTCTLCNTCVKECP 306



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDA 54
           YV  + C  C    C  VCP+D     E+    A     C+ CG+C  ECP DA
Sbjct: 69  YVNRKLCTGCG--ICKNVCPIDIIDIREDSTGKAYPTGMCVMCGLCTTECPYDA 120



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C EVCPVD    GE       + CI CG C  +CP D ++
Sbjct: 203 DGCTRCN--ICKEVCPVDAIDYGEVT-----ENCILCGNCISKCPKDVLE 245



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL----------AIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C  VCP D      + L           I  D C+ C  C   CP D I+
Sbjct: 350 EECIACG--TCSMVCPNDAITVKIDSLNFSGNKVHSEVIFNDNCVMCEKCAINCPRDVIE 407


>gi|167647826|ref|YP_001685489.1| nitrate reductase subunit beta [Caulobacter sp. K31]
 gi|167350256|gb|ABZ72991.1| nitrate reductase, beta subunit [Caulobacter sp. K31]
          Length = 507

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + E G
Sbjct: 183 CEHCLNPTCVAACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWESG 238


>gi|78356122|ref|YP_387571.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218527|gb|ABB37876.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 148

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECP 51
           C  C+  +CV+VCP       E +  + +  + CI C  C   CP
Sbjct: 59  CYHCETPECVDVCPTGAMIRRESDGIVYVDQETCIGCEACIDACP 103


>gi|325830275|ref|ZP_08163732.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487742|gb|EGC90180.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 398

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI  ++ +     CVE C           L + P+ CI CG C   CP  AI+     
Sbjct: 24 ERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPERCIGCGTCATACPTCAIELRNPT 83

Query: 62 GLEL 65
            EL
Sbjct: 84 DAEL 87



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
            + C  C    C   CP        EG  F  +H P  C+ C +CE  CP  AI      
Sbjct: 296 AQKCSSC--RMCAVFCPTGAIKKLDEGGVFGIVHRPSACMQCRLCEHICPEQAIAVSGRV 353

Query: 62  GLELWLKINSE-YATQWPNITTKKES 86
            ++ ++   +  +A + P  T  K S
Sbjct: 354 PIKQFMGKEAVCFAMKRPTWTPNKPS 379


>gi|323703139|ref|ZP_08114793.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
 gi|323531916|gb|EGB21801.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
          Length = 321

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C+ C    CV+ CP          +    D CI CG C   CP  A
Sbjct: 176 CVGC--RLCVKKCPAGALTWTGKEIVRDADRCIGCGDCADSCPKSA 219


>gi|323698109|ref|ZP_08110021.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323458041|gb|EGB13906.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 700

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 1   MTYVVTENC-ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           M Y  ++ C   C     CV  C       G N    + P+ C  CG C   CP   I
Sbjct: 126 MLYSGSKMCPEGCLGFGTCVTACQFGAIEMGPNGYPVVDPNLCTACGGCAQVCPRGVI 183


>gi|317477226|ref|ZP_07936464.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|316906612|gb|EFV28328.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
          Length = 369

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPVD 53
          C  C  T C  +CP        + L      I    C +CG+C+  CP +
Sbjct: 10 CSGC--TACANICPYQAIQMKPDNLGFLYPVIDSARCTECGICDSVCPFN 57



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 36 HPDECIDCGVCEPECPVDAIK 56
             +C  C  C   CP  AI+
Sbjct: 6  DKKQCSGCTACANICPYQAIQ 26


>gi|303231770|ref|ZP_07318492.1| putative ferredoxin [Veillonella atypica ACS-049-V-Sch6]
 gi|302513561|gb|EFL55581.1| putative ferredoxin [Veillonella atypica ACS-049-V-Sch6]
          Length = 67

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + C+ C    C E CPV C  EG     I  + CI CG C   CPV A++
Sbjct: 8  IDDTCVKCG--ACAEDCPVQCITEGTTKFIIG-NGCIGCGDCYSICPVGAVQ 56


>gi|297624163|ref|YP_003705597.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Truepera radiovictrix DSM 17093]
 gi|297165343|gb|ADI15054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera
           radiovictrix DSM 17093]
          Length = 332

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAIK 56
           V + CI+C    C  VCP   F          G   L + P+ C  C  C   CPV  I 
Sbjct: 243 VHDGCIMC--PVCTNVCPTGAFKRELSPVQMGGGGVLKLEPERCNGCNACVTSCPVRVIT 300

Query: 57  PDTEPGL 63
            D E   
Sbjct: 301 LDGEVTW 307



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          VVT+    C  T C E CP      G   + I   +C  CG+C   CP  A
Sbjct: 26 VVTKAVGGC--TVCEETCPHQAITIG-RAVEIDEIDCTGCGLCVQACPSQA 73


>gi|269103324|ref|ZP_06156021.1| FdxH [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163222|gb|EEZ41718.1| FdxH [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 296

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +C+ C    C++ CP      + EN +     ++C+ CG C   CP D
Sbjct: 99  SCMHCSDPGCLKACPEPGAIVQYENGVVDFDSEKCVGCGYCIAGCPFD 146


>gi|269137608|ref|YP_003294308.1| nitrate reductase beta subunit [Edwardsiella tarda EIB202]
 gi|267983268|gb|ACY83097.1| nitrate reductase beta subunit [Edwardsiella tarda EIB202]
 gi|304557677|gb|ADM40341.1| Respiratory nitrate reductase beta chain [Edwardsiella tarda
           FL6-60]
          Length = 506

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y   E+ +  I+ D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVASCPSGAIYKRAEDGVVLINQDQCRGWRMCVSACPYKKIYYNWKSG 238


>gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 617

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP      +      I+ + CI C  C   C   AI
Sbjct: 566 VIEEDCTTCGL--CEPVCPTGSVTWDKGEVAHINLETCIRCKACVDACKFRAI 616



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPD 58
              +  ++C  CG+CEP CP  ++  D
Sbjct: 563 KYVVIEEDCTTCGLCEPVCPTGSVTWD 589


>gi|257790250|ref|YP_003180856.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|317489711|ref|ZP_07948214.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|257474147|gb|ACV54467.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
 gi|316911177|gb|EFV32783.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 398

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI  ++ +     CVE C           L + P+ CI CG C   CP  AI+     
Sbjct: 24 ERCISVRNRNADCLRCVEACTSGALAYRAGELLVEPERCIGCGTCATACPTCAIELRNPT 83

Query: 62 GLEL 65
            EL
Sbjct: 84 DAEL 87



 Score = 41.3 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY---EGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
            + C  C    C   CP        EG  F  +H P  C+ C +CE  CP  AI      
Sbjct: 296 AQKCSSC--RMCAVFCPTGAIKKLDEGGVFGIVHRPSACMQCRLCEHICPEQAIAVSGRV 353

Query: 62  GLELWLKINSE-YATQWPNITTKKES 86
            ++ ++   +  +A + P  T  K S
Sbjct: 354 PIKQFMGKEAVCFAMKRPTWTPNKPS 379


>gi|218707208|ref|YP_002414727.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli UMN026]
 gi|298382945|ref|ZP_06992540.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|300898713|ref|ZP_07117025.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
 gi|218434305|emb|CAR15227.1| putative hydrogenase, 4Fe-4S ferredoxin-type component [Escherichia
           coli UMN026]
 gi|298276781|gb|EFI18299.1| electron transporter HydN [Escherichia coli FVEC1302]
 gi|300357631|gb|EFJ73501.1| 4Fe-4S binding domain protein [Escherichia coli MS 198-1]
          Length = 157

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           T+     C  C+   C  VCPVD        + +    CI C  C   CP  
Sbjct: 51  TWTTAVACHQCEDAPCANVCPVDAISREHGHIFVEQSRCIGCKSCMLACPFG 102


>gi|118090950|ref|XP_001232780.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Gallus
           gallus]
          Length = 209

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 108 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 164



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 108 ERCIACKLCEAICPAQAITIEAEPRAD 134



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 149 CIYCGF--CQEACPVDAIVEGPNF 170


>gi|70672290|gb|AAZ06362.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
 gi|111145377|gb|ABH06908.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
 gi|111145379|gb|ABH06909.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
 gi|111145381|gb|ABH06910.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
          Length = 631

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 11/55 (20%)

Query: 12 CKHTDCVEVCPVDCFYEGENFLAIHPDE-----------CIDCGVCEPECPVDAI 55
          CK   C + C  +C       L I  D            CI CG+C  +CP +AI
Sbjct: 27 CKPKKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVKKCPFEAI 81


>gi|15669492|ref|NP_248302.1| ferredoxin [Methanocaldococcus jannaschii DSM 2661]
 gi|48474331|sp|Q58698|Y1302_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ1302
 gi|1591941|gb|AAB99311.1| photosystem I iron-sulfur center 1 isolog [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 168

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 20/85 (23%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-------------IHPDECIDCGVCEPEC 50
           V+ E CI C+   C  VCP                         I+P++C+ C  C   C
Sbjct: 53  VIEELCIGCEG--CANVCPTKAIEMIPIEPVKITDNYVKDKIPKINPEKCVYCLYCHDFC 110

Query: 51  PVDAIKPDTEPGL-----ELWLKIN 70
           PV ++  +  P       E +++I+
Sbjct: 111 PVFSVFNEISPIHPRDVGEEYIEID 135


>gi|148262705|ref|YP_001229411.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396205|gb|ABQ24838.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 266

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 5   VTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VT+   C  CK   C  VCP    +     L      CI C  C   CP  A   D  
Sbjct: 189 VTQEMLCTRCK--KCTSVCPTAAIHADAPTLT-DKSSCIRCCACVKCCPAGAKSMDDP 243


>gi|23013693|ref|ZP_00053560.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 178

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            +V  + CI C    C+  C  D        L  +  D C  CG C   CP +AI+
Sbjct: 103 AFVNEDLCIGCL--RCIGECGSDAIVGAPKQLHTVIADACHACGKCFKICPTEAIE 156


>gi|317487131|ref|ZP_07945934.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921615|gb|EFV42898.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 590

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C    C++  CP     +      G+    I P  C+ CG+C   CPV AI
Sbjct: 528 VDADKCIACG--KCIQSGCPSVVLSDEKHPRTGKRKARIEPVTCVGCGICAQICPVHAI 584


>gi|314969411|gb|EFT13509.1| dimethylsulfoxide reductase, chain B [Propionibacterium acnes
           HL037PA1]
          Length = 213

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKP 57
           TY  + +   C+   C++ CP       ++  + +  D+C+ C  CE  CP  A + 
Sbjct: 68  TYYTSVSSNHCEFPICMKACPTTAMSRRDDGTVYVDQDKCVGCRYCEWACPYSAPQY 124


>gi|312144646|ref|YP_003996092.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium sp.
           'sapolanicus']
 gi|311905297|gb|ADQ15738.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium sp.
           'sapolanicus']
          Length = 1178

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 31/111 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------------------------EG-ENFLAIHPDE 39
           + CI C    C   CP                               EG E  + + P +
Sbjct: 688 DICIQCNQ--CALACPHAVIRPFLLDEEEVANAPEGFKTIEAKGKQLEGLEYKIQVSPYD 745

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSA 90
           C  CGVC   CPV+A++ ++   +      N EYA     ++ K + +P+A
Sbjct: 746 CTGCGVCVDVCPVNALEMESFAKMTEQEADNWEYAIN--EVSIKDDLMPAA 794


>gi|298530303|ref|ZP_07017705.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509677|gb|EFI33581.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1026

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 4    VVTENCILCKHTDCVEVCPVDCF------YEGENFLAI--HPDECIDCGVCEPECP 51
             VTENC  C    CV+ CP           EG     I  +   C  CG+CE  CP
Sbjct: 948  FVTENCDGC--AICVDTCPYGAIGLTDYDVEGVQHKKIETNKALCKGCGICEATCP 1001



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 35/96 (36%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENF---------------LAIHPDECI------- 41
           + CI C    C E CP    D F EG +                 AI  + CI       
Sbjct: 107 DKCIACNL--CAEKCPKKVPDEFNEGLDKRKSAYIKYGQTVPLKYAIEKETCIFFVKGGN 164

Query: 42  -------DCGVCEPECPVDAIKPDTEPGLELWLKIN 70
                   C  CE  CP  AI  D +   E+  +IN
Sbjct: 165 KGEKGKGKCRACEKYCPTGAIDLDQDFQDEI-KEIN 199



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 38  DECIDCGVCEPECPVDAI---KPDTEPGLELWLKINSEYAT 75
           + C  C +C   CP  AI     D E      ++ N     
Sbjct: 951 ENCDGCAICVDTCPYGAIGLTDYDVEGVQHKKIETNKALCK 991



 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 35  IHPDECIDCGVCEPECP 51
           I  D+CI C +C  +CP
Sbjct: 104 IDMDKCIACNLCAEKCP 120


>gi|298377596|ref|ZP_06987548.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_19]
 gi|298265615|gb|EFI07276.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_19]
          Length = 310

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGCG--KCAKECPFEAITVTNNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 41.3 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DCV  C  D  +         +  ++C  CG C   CP + I+
Sbjct: 142 GYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKACPKNIIE 187


>gi|289192762|ref|YP_003458703.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
 gi|288939212|gb|ADC69967.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
          Length = 619

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V  E C  C    C EVC V+           + + C+ CG C   CP +A
Sbjct: 490 VNEEKCNGCG--RCAEVCKVEAIDVRGEISYTNYNVCVGCGKCIKNCPNEA 538



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP  C           G  F A++ ++C  CG C   C V+AI
Sbjct: 465 ISGCPNGCVRPQVHDIGIAGVKFPAVNEEKCNGCGRCAEVCKVEAI 510


>gi|261402606|ref|YP_003246830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369599|gb|ACX72348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 398

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLEL 65
           E C+ C   +C   CP++     E    I+  +CI C  C   CP+ DAI    E  L+ 
Sbjct: 126 EVCVHCG--NCERACPINVIERKEGRYVINMSQCISCKECINACPIEDAIIVVDEKTLKE 183

Query: 66  WLK 68
            ++
Sbjct: 184 KIE 186



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V  + CI C    C +VC        +      I PD C+  G C  ECPV AIK     
Sbjct: 273 VDEDMCIGC--RICQKVCGSGAIKISKETKLPYIIPDLCVRGGACARECPVGAIKIVKPE 330

Query: 62  GLEL 65
             E 
Sbjct: 331 EAEK 334



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 8   NCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           NC+ C    C++VCP               +    +  D CI C +C+  C   AIK   
Sbjct: 240 NCVKCGF--CIDVCPTTAIRTHKEIVPKRKDICYMVDEDMCIGCRICQKVCGSGAIKISK 297

Query: 60  EPGLELWLKI----NSEYATQWPNITTKKESLPSAAKMDGV 96
           E  L   +          A + P    K      A K   V
Sbjct: 298 ETKLPYIIPDLCVRGGACARECPVGAIKIVKPEEAEKAVKV 338



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 17/64 (26%)

Query: 8   NCILCKHTDCVEVCPVDCF------YEGE---------NFLAIHPDECIDCGVCEPECPV 52
           +CI C   +CVE+CP           E E         N L I  + C+ CG CE  CP+
Sbjct: 83  SCIAC--ANCVEMCPTGVLEIDKHRIETEGLFFDKPKYNNLLIDDEVCVHCGNCERACPI 140

Query: 53  DAIK 56
           + I+
Sbjct: 141 NVIE 144



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C+   C E CP   V+  Y  E   N   I    CI C  C   CP   ++ D
Sbjct: 47  ERCISCEG--CKESCPAFAVEMIYSEEFQKNIPLIDEGSCIACANCVEMCPTGVLEID 102


>gi|253573620|ref|ZP_04850963.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847148|gb|EES75153.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 335

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 12/72 (16%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF-------YEGENFLA---IHPDECIDCGVCEPEC 50
           M +   E+CI C    C  VCP +CF        +G   +    I    C  C  C   C
Sbjct: 249 MPHFKEESCIHC--AQCDNVCPDNCFVWEERPDKKGRPQMFLKGIDYQYCKGCLKCIHAC 306

Query: 51  PVDAIKPDTEPG 62
           P DA+  + E  
Sbjct: 307 PTDALSGEREEE 318


>gi|237731408|ref|ZP_04561889.1| electron transport complex protein RnfB [Citrobacter sp. 30_2]
 gi|226906947|gb|EEH92865.1| electron transport complex protein RnfB [Citrobacter sp. 30_2]
          Length = 169

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-- 56
           M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I+  
Sbjct: 85  MLAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTQCIELR 142

Query: 57  --PDTEPGLEL 65
              +T    + 
Sbjct: 143 PVAETPDSWKW 153



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query: 14  HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             D  +V PV           I  + CI C  C   CPVDAI
Sbjct: 74  DGDEQDVTPVRMLA------VIDENNCIGCTKCIQACPVDAI 109


>gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large subunit [Shewanella
          decolorationis]
          Length = 410

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          C  C    C + CP             I  D+C+ CG C   CP  AI+ 
Sbjct: 22 CKGCD--ACKQFCPTHAINGASGAAHSIDEDKCLSCGQCLINCPFSAIEE 69



 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I+  +C  C  C+  CP  AI
Sbjct: 17 INASKCKGCDACKQFCPTHAI 37


>gi|39934299|ref|NP_946575.1| putative indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Rhodopseudomonas palustris CGA009]
 gi|39648147|emb|CAE26667.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 608

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++T  C  C    C+ + CP     D ++EG + + I P  CI C +C   C +D IK  
Sbjct: 545 IITSQCTAC--QSCMNLGCPALTWSDEWFEGRHRVKIDPALCIGCTLCAQVCTIDCIKIA 602

Query: 59  TEP 61
           T  
Sbjct: 603 TPA 605


>gi|303256515|ref|ZP_07342529.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|331000614|ref|ZP_08324272.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302860006|gb|EFL83083.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|329571176|gb|EGG52881.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 234

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHT-DCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C H   C   CP              +  D+CI CG+C+  CP D +  D E
Sbjct: 119 DTCRQCAHPVPCANACPQGAIRVDPKTGARYVDEDKCIGCGLCQKACPWDMMSFDRE 175


>gi|293603032|ref|ZP_06685468.1| formate dehydrogenase-O, beta subunit [Achromobacter piechaudii
           ATCC 43553]
 gi|292818570|gb|EFF77615.1| formate dehydrogenase-O, beta subunit [Achromobacter piechaudii
           ATCC 43553]
          Length = 299

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIIQYNNGIVDFHEESCIGCGYCITGCPFNVPR 149


>gi|294647661|ref|ZP_06725226.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294810367|ref|ZP_06769027.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292636989|gb|EFF55442.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294442423|gb|EFG11230.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 443

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 346 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 405

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 406 CPARPFRAIYIEGNPVQKE 424


>gi|261494103|ref|ZP_05990606.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496056|ref|ZP_05992466.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308306|gb|EEY09599.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310269|gb|EEY11469.1| nitrite reductase Fe-S protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 225

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCTNAPCVSVCPTGASFIDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|218699761|ref|YP_002407390.1| hypothetical protein ECIAI39_1384 [Escherichia coli IAI39]
 gi|218369747|emb|CAR17518.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI39]
 gi|323968440|gb|EGB63846.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|323978189|gb|EGB73275.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
 gi|327252790|gb|EGE64444.1| 4Fe-4S binding domain protein [Escherichia coli STEC_7v]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACP 167


>gi|218780264|ref|YP_002431582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761648|gb|ACL04114.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 436

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C + CP++                  I  + C+ CGVC   C   A+
Sbjct: 289 VDDDACMGCG--KCADACPINAISLAPVKGQGKKKKKPIIDEEICLGCGVCALSCKPGAL 346

Query: 56  KPD 58
           K +
Sbjct: 347 KLE 349



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 6/31 (19%)

Query: 25  CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  E      +  D C+ CG C   CP++AI
Sbjct: 285 CIAE------VDDDACMGCGKCADACPINAI 309


>gi|163793195|ref|ZP_02187171.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
 gi|159181841|gb|EDP66353.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
          Length = 159

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 58  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 114



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
          P+   + GE+ L  +P   + CI C +CE  CP  AI  + EP  +
Sbjct: 39 PISPRFRGEHVLRRYPNGEERCIACKLCEAICPAQAITIEAEPRAD 84



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 99  CIYCGF--CQEACPVDAIVEGPNF 120


>gi|83719559|ref|YP_441622.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264]
 gi|167580430|ref|ZP_02373304.1| NADH dehydrogenase subunit I [Burkholderia thailandensis TXDOH]
 gi|167618539|ref|ZP_02387170.1| NADH dehydrogenase subunit I [Burkholderia thailandensis Bt4]
 gi|257139682|ref|ZP_05587944.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264]
 gi|115502522|sp|Q2SZM7|NUOI_BURTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|83653384|gb|ABC37447.1| NADH dehydrogenase I, I subunit [Burkholderia thailandensis E264]
          Length = 162

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPAMAITIESE 83


>gi|150389275|ref|YP_001319324.1| cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens
           QYMF]
 gi|149949137|gb|ABR47665.1| Cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens
           QYMF]
          Length = 286

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGL 63
           ++ C+ C    C E C  D     ++   + P  C  CGVCE  CPV A+  KP+    L
Sbjct: 66  SQICVQCDL--CRENCRFDAINF-DDGYHVDPFVCEGCGVCEELCPVGAVSLKPEKAGDL 122

Query: 64  ELWLK 68
            L+ +
Sbjct: 123 MLYKE 127


>gi|15802086|ref|NP_288108.1| hypothetical protein Z2702 [Escherichia coli O157:H7 EDL933]
 gi|15831635|ref|NP_310408.1| hypothetical protein ECs2381 [Escherichia coli O157:H7 str. Sakai]
 gi|16129630|ref|NP_416189.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|24113062|ref|NP_707572.1| hypothetical protein SF1702 [Shigella flexneri 2a str. 301]
 gi|30063186|ref|NP_837357.1| hypothetical protein S1834 [Shigella flexneri 2a str. 2457T]
 gi|74312001|ref|YP_310420.1| hypothetical protein SSON_1482 [Shigella sonnei Ss046]
 gi|89108514|ref|AP_002294.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. W3110]
 gi|110805650|ref|YP_689170.1| hypothetical protein SFV_1696 [Shigella flexneri 5 str. 8401]
 gi|157161139|ref|YP_001458457.1| hypothetical protein EcHS_A1755 [Escherichia coli HS]
 gi|168752360|ref|ZP_02777382.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168765131|ref|ZP_02790138.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771662|ref|ZP_02796669.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168778033|ref|ZP_02803040.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783947|ref|ZP_02808954.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790500|ref|ZP_02815507.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168802699|ref|ZP_02827706.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC508]
 gi|170019976|ref|YP_001724930.1| hypothetical protein EcolC_1957 [Escherichia coli ATCC 8739]
 gi|170081334|ref|YP_001730654.1| 4Fe-4S ferridoxin-type protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170680484|ref|YP_001743581.1| hypothetical protein EcSMS35_1523 [Escherichia coli SMS-3-5]
 gi|188493243|ref|ZP_03000513.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|191169564|ref|ZP_03031289.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|193064913|ref|ZP_03045989.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|193071598|ref|ZP_03052505.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|194440079|ref|ZP_03072134.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|195940385|ref|ZP_03085767.1| hypothetical protein EscherichcoliO157_28980 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208810434|ref|ZP_03252310.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817059|ref|ZP_03258179.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820861|ref|ZP_03261181.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400156|ref|YP_002270742.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209918987|ref|YP_002293071.1| hypothetical protein ECSE_1796 [Escherichia coli SE11]
 gi|217328764|ref|ZP_03444845.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554240|ref|YP_002387153.1| hypothetical protein ECIAI1_1725 [Escherichia coli IAI1]
 gi|218695235|ref|YP_002402902.1| hypothetical protein EC55989_1841 [Escherichia coli 55989]
 gi|238900889|ref|YP_002926685.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|253773369|ref|YP_003036200.1| hypothetical protein ECBD_1971 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161735|ref|YP_003044843.1| hypothetical protein ECB_01643 [Escherichia coli B str. REL606]
 gi|254793291|ref|YP_003078128.1| hypothetical protein ECSP_2241 [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018132|ref|ZP_05431997.1| hypothetical protein ShiD9_04403 [Shigella sp. D9]
 gi|256022663|ref|ZP_05436528.1| hypothetical protein E4_04769 [Escherichia sp. 4_1_40B]
 gi|260843980|ref|YP_003221758.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|260855498|ref|YP_003229389.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|260868165|ref|YP_003234567.1| putative 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
 gi|261227881|ref|ZP_05942162.1| hypothetical protein EscherichiacoliO157_25232 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258385|ref|ZP_05950918.1| hypothetical protein EscherichiacoliO157EcO_21542 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282804|ref|YP_003499622.1| hypothetical protein G2583_2069 [Escherichia coli O55:H7 str.
           CB9615]
 gi|293409986|ref|ZP_06653562.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293414990|ref|ZP_06657633.1| ferredoxin-like protein ydhY [Escherichia coli B185]
 gi|293446048|ref|ZP_06662470.1| ferredoxin-like protein ydhY [Escherichia coli B088]
 gi|297521080|ref|ZP_06939466.1| hypothetical protein EcolOP_25827 [Escherichia coli OP50]
 gi|300820064|ref|ZP_07100240.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|300918042|ref|ZP_07134664.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300939005|ref|ZP_07153702.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300958551|ref|ZP_07170683.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|301026858|ref|ZP_07190258.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|307138332|ref|ZP_07497688.1| hypothetical protein EcolH7_09401 [Escherichia coli H736]
 gi|307310755|ref|ZP_07590401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|331642271|ref|ZP_08343406.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
 gi|331653072|ref|ZP_08354077.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
 gi|331668357|ref|ZP_08369205.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331673233|ref|ZP_08374001.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
 gi|331677544|ref|ZP_08378219.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
 gi|332279177|ref|ZP_08391590.1| conserved hypothetical protein [Shigella sp. D9]
 gi|77416660|sp|P0AAL7|YDHY_ECO57 RecName: Full=Uncharacterized ferredoxin-like protein ydhY
 gi|77416661|sp|P0AAL6|YDHY_ECOLI RecName: Full=Uncharacterized ferredoxin-like protein ydhY
 gi|77416662|sp|P0AAL8|YDHY_SHIFL RecName: Full=Uncharacterized ferredoxin-like protein ydhY
 gi|12515673|gb|AAG56661.1|AE005390_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
 gi|1549285|gb|AAB47950.1| hypothetical protein [Escherichia coli str. K-12 substr. MG1655]
 gi|1742752|dbj|BAA15444.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str. K12
           substr. W3110]
 gi|1787963|gb|AAC74744.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13361848|dbj|BAB35804.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|24052035|gb|AAN43279.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|30041438|gb|AAP17166.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|73855478|gb|AAZ88185.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|110615198|gb|ABF03865.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|157066819|gb|ABV06074.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
 gi|169754904|gb|ACA77603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|169889169|gb|ACB02876.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170518202|gb|ACB16380.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
 gi|187766872|gb|EDU30716.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013783|gb|EDU51905.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188488442|gb|EDU63545.1| iron-sulfur cluster-binding protein [Escherichia coli 53638]
 gi|188998803|gb|EDU67789.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359622|gb|EDU78041.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365013|gb|EDU83429.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370045|gb|EDU88461.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189375377|gb|EDU93793.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190900400|gb|EDV60224.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|192927400|gb|EDV82018.1| iron-sulfur cluster-binding protein [Escherichia coli E22]
 gi|192955096|gb|EDV85592.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|194421001|gb|EDX37033.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|208724950|gb|EDZ74657.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731402|gb|EDZ80091.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740984|gb|EDZ88666.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161556|gb|ACI38989.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209769248|gb|ACI82936.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769250|gb|ACI82937.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769252|gb|ACI82938.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769254|gb|ACI82939.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209769256|gb|ACI82940.1| putative oxidoreductase Fe-S subunit [Escherichia coli]
 gi|209912246|dbj|BAG77320.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|217318111|gb|EEC26538.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|218351967|emb|CAU97699.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli 55989]
 gi|218361008|emb|CAQ98582.1| putative 4Fe-4S ferridoxin-type subunit of oxidoreductase
           [Escherichia coli IAI1]
 gi|238862105|gb|ACR64103.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli BW2952]
 gi|253324413|gb|ACT29015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973636|gb|ACT39307.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli B str.
           REL606]
 gi|253977831|gb|ACT43501.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|254592691|gb|ACT72052.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O157:H7
           str. TW14359]
 gi|257754147|dbj|BAI25649.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O26:H11
           str. 11368]
 gi|257759127|dbj|BAI30624.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O103:H2
           str. 12009]
 gi|257764521|dbj|BAI36016.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli O111:H-
           str. 11128]
 gi|260449203|gb|ACX39625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|281601109|gb|ADA74093.1| putative ferredoxin-like protein YdhY [Shigella flexneri 2002017]
 gi|284921596|emb|CBG34668.1| putative oxidoreductase Fe-S subunit [Escherichia coli 042]
 gi|290762677|gb|ADD56638.1| Uncharacterized ferredoxin-like protein ydhY [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322878|gb|EFE62306.1| ferredoxin-like protein ydhY [Escherichia coli B088]
 gi|291432638|gb|EFF05617.1| ferredoxin-like protein ydhY [Escherichia coli B185]
 gi|291470454|gb|EFF12938.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300314796|gb|EFJ64580.1| 4Fe-4S binding domain protein [Escherichia coli MS 175-1]
 gi|300395298|gb|EFJ78836.1| 4Fe-4S binding domain protein [Escherichia coli MS 69-1]
 gi|300414784|gb|EFJ98094.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300456075|gb|EFK19568.1| 4Fe-4S binding domain protein [Escherichia coli MS 21-1]
 gi|300527369|gb|EFK48431.1| 4Fe-4S binding domain protein [Escherichia coli MS 107-1]
 gi|306908933|gb|EFN39429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309701899|emb|CBJ01211.1| putative oxidoreductase Fe-S subunit [Escherichia coli ETEC H10407]
 gi|313648954|gb|EFS13391.1| 4Fe-4S binding domain protein [Shigella flexneri 2a str. 2457T]
 gi|313848653|emb|CAQ32150.2| predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           BL21(DE3)]
 gi|315060979|gb|ADT75306.1| predicted 4Fe-4S ferridoxin-type protein [Escherichia coli W]
 gi|315136315|dbj|BAJ43474.1| hypothetical protein ECDH1ME8569_1618 [Escherichia coli DH1]
 gi|320188361|gb|EFW63023.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EC1212]
 gi|320197856|gb|EFW72464.1| putative oxidoreductase, Fe-S subunit [Escherichia coli EC4100B]
 gi|320641889|gb|EFX11257.1| hypothetical protein ECO5101_07342 [Escherichia coli O157:H7 str.
           G5101]
 gi|320647345|gb|EFX16153.1| hypothetical protein ECO9389_09078 [Escherichia coli O157:H- str.
           493-89]
 gi|320652639|gb|EFX20908.1| hypothetical protein ECO2687_03570 [Escherichia coli O157:H- str. H
           2687]
 gi|320653024|gb|EFX21220.1| hypothetical protein ECO7815_12500 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658708|gb|EFX26385.1| hypothetical protein ECO5905_08434 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668698|gb|EFX35503.1| hypothetical protein ECOSU61_21183 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152820|gb|EFZ39090.1| 4Fe-4S binding domain protein [Escherichia coli EPECa14]
 gi|323180989|gb|EFZ66527.1| 4Fe-4S binding domain protein [Escherichia coli 1180]
 gi|323186053|gb|EFZ71409.1| 4Fe-4S binding domain protein [Escherichia coli 1357]
 gi|323378449|gb|ADX50717.1| hypothetical protein EKO11_2101 [Escherichia coli KO11]
 gi|323937277|gb|EGB33556.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323940659|gb|EGB36850.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323948031|gb|EGB44023.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|323962165|gb|EGB57760.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323973947|gb|EGB69119.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|324016537|gb|EGB85756.1| 4Fe-4S binding domain protein [Escherichia coli MS 117-3]
 gi|324119158|gb|EGC13046.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|326342040|gb|EGD65821.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. 1044]
 gi|326343592|gb|EGD67354.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. 1125]
 gi|331039069|gb|EGI11289.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H736]
 gi|331049170|gb|EGI21242.1| putative oxidoreductase, Fe-S subunit [Escherichia coli M718]
 gi|331063551|gb|EGI35462.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA271]
 gi|331069431|gb|EGI40818.1| putative oxidoreductase, Fe-S subunit [Escherichia coli TA280]
 gi|331074004|gb|EGI45324.1| putative oxidoreductase, Fe-S subunit [Escherichia coli H591]
 gi|332101529|gb|EGJ04875.1| conserved hypothetical protein [Shigella sp. D9]
 gi|332756992|gb|EGJ87335.1| 4Fe-4S binding domain protein [Shigella flexneri 4343-70]
 gi|332757758|gb|EGJ88087.1| 4Fe-4S binding domain protein [Shigella flexneri 2747-71]
 gi|332758513|gb|EGJ88834.1| 4Fe-4S binding domain protein [Shigella flexneri K-671]
 gi|333003831|gb|EGK23366.1| 4Fe-4S binding domain protein [Shigella flexneri K-218]
 gi|333017936|gb|EGK37241.1| 4Fe-4S binding domain protein [Shigella flexneri K-304]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|325958129|ref|YP_004289595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329561|gb|ADZ08623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 412

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +C+ C    CV+ CPVD     E    +AI  + CI CGVC   CP +A+ 
Sbjct: 145 DCVGCG--MCVDECPVDAITLDEIGGSIAIDEETCIKCGVCSQTCPWNAVY 193



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
           CI C    CVE CP D      + L++  P+ C  CG+CE  CPVDAI  + E G
Sbjct: 216 CIGCNL--CVEECPGDFIEPKPSTLSVTLPEVCTACGLCEKLCPVDAIDLEVELG 268



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 12/61 (19%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD----------ECIDCGVCEPECPVDAIKPD 58
           C++C    CV++CPV+           H D          +C+ CG+C  ECPVDAI  D
Sbjct: 107 CVMC--QRCVDICPVEVIGVEGVKEPKHTDIDISGPIAIVDCVGCGMCVDECPVDAITLD 164

Query: 59  T 59
            
Sbjct: 165 E 165



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ ++CI CG C+  CP  AI+
Sbjct: 1  MIVVNKEDCIRCGACQGACPTAAIE 25



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C + CP +  Y                 +  + CI C +C  ECP D I+
Sbjct: 175 ETCIKCGV--CSQTCPWNAVYISGKKPEKRSKNMLKFEVDENTCIGCNLCVEECPGDFIE 232

Query: 57  P 57
           P
Sbjct: 233 P 233



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           C  C    C++VCP       E  ++  P E  C+ C  C   CPV+ I
Sbjct: 76  CDKCGD--CIDVCPPQVLKLDEGKVSKIPLEGYCVMCQRCVDICPVEVI 122



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 14/57 (24%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH------------PDECIDCGVCEPECPVD 53
           C  C    C   CP       E    I             PD+C +CG C   CP +
Sbjct: 325 CTRCG--ACTTACPEGALTISEIDKVIDGKVVKRNRISFSPDKCTECGDCVDVCPYN 379


>gi|322715528|gb|EFZ07099.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 655

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   C  P        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 102



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 13/71 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCG------VCEPECPV 52
           V  + CI CK   CV  CP             N       +C  C        C   CP 
Sbjct: 84  VNAQKCIGCK--SCVVACPFGTMQMVLTPVAPNQFKASAHKCDLCQGREQGPACVENCPA 141

Query: 53  DAIKPDTEPGL 63
           DA++  TE  L
Sbjct: 142 DALQLVTEDSL 152


>gi|302035618|ref|YP_003795940.1| NADH-quinone oxidoreductase subunit I [Candidatus Nitrospira
           defluvii]
 gi|300603682|emb|CBK40013.1| NADH-quinone oxidoreductase, subunit I (modular protein)
           [Candidatus Nitrospira defluvii]
          Length = 202

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 14/60 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF--------LAIHPDECIDCGVCEPECPVDA 54
           + C+ C    C   CP  C      E              I   +C+ CG C   CPV+A
Sbjct: 71  DRCVGCDL--CEAACPSRCIKVISQEDPERPLQRFASEFYIDITKCVFCGYCVEACPVNA 128



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 38  DECIDCGVCEPECPVDAI----KPDTEPGLELW 66
           D C+ C +CE  CP   I    + D E  L+ +
Sbjct: 71  DRCVGCDLCEAACPSRCIKVISQEDPERPLQRF 103


>gi|291556729|emb|CBL33846.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 573

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++  + C  CK   C+ + CP      G+  + I    C+ CG+CE  C  DAIK 
Sbjct: 522 HIDADKCKNCK--SCMRIGCP--ALVSGDKCITIDNTLCVGCGLCEQLCKFDAIKE 573


>gi|284162499|ref|YP_003401122.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012496|gb|ADB58449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 128

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           CI C    C+ VCP++ F   EN+ + + P +CI CG C   C   A
Sbjct: 79  CIHCGL--CISVCPMEVFKFDENWRVVLDPKKCIHCGFCVKVCVTKA 123



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 26 FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            E    +     +CI CG+C   CP++  K D  
Sbjct: 65 IQELGEGIVKDDSKCIHCGLCISVCPMEVFKFDEN 99


>gi|257063170|ref|YP_003142842.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790823|gb|ACV21493.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y V+ +C  C    CV  CP     + E    ++I  + CI  G C   CP  A   + E
Sbjct: 63  YFVSLSCNHCDSPACVAACPTGACMKDEESGVVSIDEEICIGSGECVTACPYFAPSLNEE 122


>gi|240143434|ref|ZP_04742035.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|257204625|gb|EEV02910.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|291534388|emb|CBL07500.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Roseburia intestinalis M50/1]
          Length = 288

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + CI C    C + C         N + I+ D+C  CG C   CP DA
Sbjct: 162 VEDKCIGCGV--CEKACRQGAIKCEGNKVTINRDQCNYCGRCVKSCPTDA 209



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D+CI CGVCE  C   AIK +
Sbjct: 164 DKCIGCGVCEKACRQGAIKCE 184


>gi|254503406|ref|ZP_05115557.1| cytochrome c oxidase accessory protein CcoG [Labrenzia alexandrii
           DFL-11]
 gi|222439477|gb|EEE46156.1| cytochrome c oxidase accessory protein CcoG [Labrenzia alexandrii
           DFL-11]
          Length = 462

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 18/71 (25%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +CI C    C +VCP      +G         +CI CG+C   C         P   I  
Sbjct: 244 DCIDCYQ--CFQVCPTGVDIRKGPQL------DCIQCGLCIDACDNIMTKVGKPTGLIAY 295

Query: 58  DTEPGLELWLK 68
           DT+  +E  ++
Sbjct: 296 DTDENIERRIE 306


>gi|218261737|ref|ZP_03476472.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223813|gb|EEC96463.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
          DSM 18315]
          Length = 301

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CVE CP          +      C  CG+C   CP  A++
Sbjct: 52 CIGC--RTCVEACPQQALTLTPEGIVTDGARCTLCGICAEVCPALAME 97


>gi|194434716|ref|ZP_03066969.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
 gi|194417054|gb|EDX33170.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|169335425|ref|ZP_02862618.1| hypothetical protein ANASTE_01837 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258163|gb|EDS72129.1| hypothetical protein ANASTE_01837 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 114

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +C  C    C++ C      + +  ++++ ++CI C  C   CP  A+ PD E G
Sbjct: 27 SCRHCDDAICLKSCISGALTKKDGLISVNKEKCIGCLTCVLVCPYGAVHPDEENG 81



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-------VCEPECPVDAIK 56
           V  E CI C    CV VCP    +  E    +  D+C  C         C   CP +AI 
Sbjct: 54  VNKEKCIGCL--TCVLVCPYGAVHPDEENGVV--DKCEFCTNNLKGEPNCVKGCPNNAIV 109

Query: 57  PDTE 60
            +  
Sbjct: 110 FEER 113


>gi|167770601|ref|ZP_02442654.1| hypothetical protein ANACOL_01947 [Anaerotruncus colihominis DSM
          17241]
 gi|167667196|gb|EDS11326.1| hypothetical protein ANACOL_01947 [Anaerotruncus colihominis DSM
          17241]
          Length = 152

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C+ C+   CV  CP  C Y+             CI C  C   CP  A   + E  +E 
Sbjct: 40 ACMHCEDAPCVMGCPSSCLYKDPESGLTLYDNTNCIGCHSCAMACPFGAPSFNAEGKMEK 99


>gi|144900794|emb|CAM77658.1| NADH-quinone oxidoreductase, chain I [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 162

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 14/77 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP                      +   +CI CG+C+  CPVDAI 
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAEPRPDGSRRARRYDLDMTKCIYCGLCQEACPVDAIV 118

Query: 57  PDTEPGLELWLKINSEY 73
               P  E   +  +E 
Sbjct: 119 EG--PNFEFATETRAEL 133


>gi|62181045|ref|YP_217462.1| putative oxidoreductase Fe-S binding subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62128678|gb|AAX66381.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 655

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVC--PVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C   C  P        + + ++  +CI C  C   CP  
Sbjct: 56  CHHCEDAPCARSCSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFG 102



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 13/71 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCG------VCEPECPV 52
           V  + CI CK   CV  CP             N       +C  C        C   CP 
Sbjct: 84  VNAQKCIGCK--SCVVACPFGTMQMVLTPVAPNQFKASAHKCDLCQGREQGPACVENCPA 141

Query: 53  DAIKPDTEPGL 63
           DA++  TE  L
Sbjct: 142 DALQLVTEDSL 152


>gi|121998714|ref|YP_001003501.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Halorhodospira halophila SL1]
 gi|121590119|gb|ABM62699.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 237

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V  +C+ C    CV+VCP    Y  + +  + +   +C+ C  C   CP    + D
Sbjct: 68  VPVSCMHCDDPPCVDVCPTGASYKRDADGIVLVDETKCMGCNYCAWACPYGCRELD 123


>gi|291541232|emb|CBL14343.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Roseburia intestinalis XB6B4]
          Length = 288

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V + CI C    C + C         N + I+ D+C  CG C   CP DA
Sbjct: 162 VEDKCIGCGV--CEKACRQGAIKCEGNKVTINRDQCNYCGRCVKSCPTDA 209



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D+CI CGVCE  C   AIK +
Sbjct: 164 DKCIGCGVCEKACRQGAIKCE 184


>gi|240102324|ref|YP_002958632.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus gammatolerans EJ3]
 gi|239909877|gb|ACS32768.1| Ketoisovalerate oxidoreductase subunit vorD (vorD) [Thermococcus
           gammatolerans EJ3]
          Length = 105

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ E C+ C    C + CP    Y  E+    I  D C  CG+C  ECP +AI  + E 
Sbjct: 48  IIEEKCVKC--YICWKFCPEPAIYIREDGYVGIDYDYCKGCGICANECPTNAITMEKEE 104


>gi|238028135|ref|YP_002912366.1| NADH dehydrogenase subunit I [Burkholderia glumae BGR1]
 gi|237877329|gb|ACR29662.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Burkholderia glumae BGR1]
          Length = 162

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESQTRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 61 ERCIACKLCEAVCPAMAITIESQ 83


>gi|227874303|ref|ZP_03992490.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
 gi|227839854|gb|EEJ50297.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
          Length = 457

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV  CP +               E F  ++  ECI+CG C   CP    
Sbjct: 373 TTPCINCG--RCVTACPENLMPTLMMVASLQKNTERFEKLYGMECIECGCCSYVCPAK-- 428

Query: 56  KPDTEPGLELWLKINSE 72
           +P T+   ++  K+N+E
Sbjct: 429 RPLTQGFKQMKRKVNAE 445


>gi|253700341|ref|YP_003021530.1| aldo/keto reductase [Geobacter sp. M21]
 gi|251775191|gb|ACT17772.1| aldo/keto reductase [Geobacter sp. M21]
          Length = 316

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           C  C    CV  C  D     E    +   +CI CG C   CP
Sbjct: 269 CKGCG--ACVPACTNDALKLVEGKAVVDESQCILCGYCGAACP 309



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIK 56
             LAI    C  CG C P C  DA+K
Sbjct: 260 RKLAIMEAFCKGCGACVPACTNDALK 285


>gi|116754209|ref|YP_843327.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665660|gb|ABK14687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 152

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV  CP       E+  +    D C  CG C   C + AI  D+E
Sbjct: 73  CHACEDPACVRACPTGALSRKEDGSVVFDRDLCDGCGRCVDACLIGAISLDSE 125


>gi|302343655|ref|YP_003808184.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfarculus baarsii DSM 2075]
 gi|301640268|gb|ADK85590.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfarculus baarsii DSM 2075]
          Length = 1477

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9    CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C +C    CV  CP       +    I    C  CG C  ECP  AI
Sbjct: 1414 CAVCL--TCVRTCPYGVPKIKDGAAYIEVASCYGCGACAAECPGKAI 1458



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 38  DECIDCGVCEPECPVDAI-KPDTEPGLELWLKINSEYATQWPN---ITTKKESL 87
           + C  CG C   CPV    + D E G      I   YA  +PN   IT    + 
Sbjct: 110 ESCTACGDCVKVCPVSVPNEFDQELGQRK--AIYKRYAQAYPNAYSITKLDAAP 161



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 33/108 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE-----G-------------ENFLAIHPDECIDCG 44
           +V +E+C  C    CV+VCPV    E     G              N  +I     +D  
Sbjct: 106 FVASESCTACGD--CVKVCPVSVPNEFDQELGQRKAIYKRYAQAYPNAYSITK---LDAA 160

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINS--EYATQWPNITTKKESLPSA 90
            C+  CP +         ++ ++++    ++A     I  K   LP A
Sbjct: 161 PCKVSCPAN-------LNVQGYVQMAKQGKFAEAL-AIIMKDLPLPGA 200


>gi|301059322|ref|ZP_07200249.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446551|gb|EFK10389.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 395

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
             V  E C  C    C   C VD     E      +  D CI CG+C  +CP  +I
Sbjct: 289 AVVNEEACEGCG--KCERSCQVDAVKVVEKGKSAVVSLDRCIGCGICVSKCPTGSI 342


>gi|290968031|ref|ZP_06559580.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290781937|gb|EFD94516.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 593

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + CI CK   C+   CP   +        I   +C+ C VC   CPV AI  + 
Sbjct: 540 DTCIGCK--TCLRTGCPALRYETDSRKAHISQADCVGCTVCLQVCPVQAIAAEE 591


>gi|168188071|ref|ZP_02622706.1| anaerobic sulfite reductase subunit C [Clostridium botulinum C str.
           Eklund]
 gi|169294091|gb|EDS76224.1| anaerobic sulfite reductase subunit C [Clostridium botulinum C str.
           Eklund]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C     +E C +   Y+ E+ + I  ++CI+CG C   C  +A++ + E G++++
Sbjct: 170 DKCRNCGKCGVIEKCRMKAAYKEEDKVVIDREKCINCGKCIENCYFNAMETN-EEGMKIY 228

Query: 67  L 67
           L
Sbjct: 229 L 229


>gi|158426151|ref|YP_001527443.1| nitrogen fixation protein [Azorhizobium caulinodans ORS 571]
 gi|158333040|dbj|BAF90525.1| nitrogen fixation protein [Azorhizobium caulinodans ORS 571]
          Length = 489

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 18/71 (25%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +C+ C    CV VCP      EG          CI CG+C   C         P   I  
Sbjct: 276 DCVDCNQ--CVNVCPTGVDIREGMQL------ACIQCGLCIDACNNIMDKINRPRGLIAY 327

Query: 58  DTEPGLELWLK 68
           ++E  LE  + 
Sbjct: 328 ESEANLEARIA 338


>gi|197116471|ref|YP_002136898.1| carbon monoxide dehydrogenase-associated iron-sulfur
           cluster-binding oxidoreductase CooF [Geobacter
           bemidjiensis Bem]
 gi|197085831|gb|ACH37102.1| carbon monoxide dehydrogenase-associated iron-sulfur
           cluster-binding oxidoreductase CooF [Geobacter
           bemidjiensis Bem]
          Length = 189

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C+   C   CP     + +  + +    C+ C VC   CP  AI    E   E
Sbjct: 65  CRQCEDAPCACACPTGAMLQEKGAVGVREKNCVGCKVCVMVCPFGAISVKHEGSEE 120


>gi|119897695|ref|YP_932908.1| NADH dehydrogenase subunit I [Azoarcus sp. BH72]
 gi|156632702|sp|A1K5B6|NUOI_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|119670108|emb|CAL94021.1| putative NADH-ubiquinone oxidoreductase, chain I [Azoarcus sp.
           BH72]
          Length = 161

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G    +   I   +CI CG CE  CPVDA+
Sbjct: 60  ERCIACKL--CEAICPAMAITIESEQREDGSRRTSRYDIDLTKCIFCGFCEEACPVDAV 116



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 60 ERCIACKLCEAICPAMAITIESEQRED 86


>gi|71907085|ref|YP_284672.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
          RCB]
 gi|71846706|gb|AAZ46202.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
          aromatica RCB]
          Length = 92

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVD- 53
          M   +T++C+ C    CV+VCP D  Y+      I   +C +C        C   CP++ 
Sbjct: 1  MALQITQSCVNC--WACVDVCPNDAIYQDTPHFLIDDGKCTECLGDHSVPQCAAICPIEM 58

Query: 54 AIKPDT 59
          AI  + 
Sbjct: 59 AIVDEL 64


>gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
 gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 591

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV E C+ C    C + CPVD    E      +  ++C  C  C   C   AI+
Sbjct: 540 VVEEKCVKCG--ACFKACPVDAIIWEKGQIAILDKEKCTKCKSCYDACRFMAIE 591



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP +C  E   +  +  ++C+ CG C   CPVDAI  +
Sbjct: 527 CPSNCCKELLLWQVV-EEKCVKCGACFKACPVDAIIWE 563


>gi|45358542|ref|NP_988099.1| hypothetical protein MMP0979 [Methanococcus maripaludis S2]
 gi|44921300|emb|CAF30535.1| conserved archaeal protein [Methanococcus maripaludis S2]
          Length = 154

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+ C      C +VCPV+   E +  L ++ + CI C +C   CPV A
Sbjct: 41 CLQCHPDKAPCKQVCPVNAIEELDGALVVNEESCILCRLCMVACPVGA 88


>gi|332704565|ref|ZP_08424653.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554714|gb|EGJ51758.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 266

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V + C  C    C EVCP     + +N   I+ + CI C  C   CP +A      P ++
Sbjct: 191 VNDQCTQCGL--CAEVCPTSA-VDSQNSSLINQEICITCCACIKNCPQNARSMKPSPVMD 247

Query: 65  LWLKINSEY 73
             +++N+ +
Sbjct: 248 ASIRLNTLF 256


>gi|332653549|ref|ZP_08419294.1| coenzyme F420 hydrogenase beta subunit [Ruminococcaceae bacterium
           D16]
 gi|332518695|gb|EGJ48298.1| coenzyme F420 hydrogenase beta subunit [Ruminococcaceae bacterium
           D16]
          Length = 307

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E C  CK   C + CP+      E    I P+ C  CG C  +CP  AI+  T
Sbjct: 174 ELCKGCK--MCEKECPMHVAKVVEGKATIDPNTCNHCGRCIRKCPFHAIEAQT 224



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           +CV+    D    G+    +HP+ C  C +CE ECP+
Sbjct: 152 NCVKPDLNDVGIVGQRIPLVHPELCKGCKMCEKECPM 188


>gi|293400770|ref|ZP_06644915.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291305796|gb|EFE47040.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 57

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    CV VCPV       ++        CIDCG C   CPV+AI
Sbjct: 5  VNADTCIGCG--ACVGVCPVGALSMNADSKSECDEGTCIDCGSCISACPVEAI 55



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          ++ D CI CG C   CPV A+  + +   E
Sbjct: 5  VNADTCIGCGACVGVCPVGALSMNADSKSE 34


>gi|255019725|ref|ZP_05291802.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970793|gb|EET28278.1| Anaerobic dimethyl sulfoxide reductase chain B [Acidithiobacillus
           caldus ATCC 51756]
          Length = 230

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C+ C++ +CV VCP    +   E+ +  +   +C+ C  C   CP  A + D
Sbjct: 71  SCMHCENAECVTVCPTGASYKRAEDGIVLVDQSKCMGCNYCSWACPYGARELD 123


>gi|150402633|ref|YP_001329927.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033663|gb|ABR65776.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 161

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C++C    C + CP     E ++ ++   ++C+ CG CE  CP  AIK +
Sbjct: 112 QKCVMCLV--CSKNCPFGAISESDDKISFDMEKCVLCGHCEKICPAKAIKLE 161



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
          E CILC    C+E+CPV+           I  D+C+ C  C   CPVDAIK
Sbjct: 36 EICILCD--RCLEICPVNAISSTFPEVPYID-DKCVYCNTCVETCPVDAIK 83



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 20/74 (27%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE------------------NFLAIHPDECIDCGVC 46
           + + C+ C    CVE CPVD     +                    L  +  +C+ C VC
Sbjct: 63  IDDKCVYCN--TCVETCPVDAIKITKTRVKVENGNLIIENRLKSENLEYNRQKCVMCLVC 120

Query: 47  EPECPVDAIKPDTE 60
              CP  AI    +
Sbjct: 121 SKNCPFGAISESDD 134



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
           N + I+P+ CI C  C   CPV+AI
Sbjct: 28 NNKIEINPEICILCDRCLEICPVNAI 53


>gi|124267483|ref|YP_001021487.1| putative electron transport-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260258|gb|ABM95252.1| putative electron transport-related protein [Methylibium
           petroleiphilum PM1]
          Length = 228

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C  T C++ CPVDC       +  +   +C  C +C P CPVD I  +       W 
Sbjct: 98  CIGC--TLCIKACPVDCIVGAAKQMHTVVESQCTGCELCIPVCPVDCISLEDATQTTGWA 155

Query: 68  K 68
            
Sbjct: 156 A 156



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 28  EGENFL-AIHPDECIDCGVCEPECPVDAI 55
           EG   L  I    CI C +C   CPVD I
Sbjct: 85  EGPRRLAVIDETWCIGCTLCIKACPVDCI 113


>gi|328947842|ref|YP_004365179.1| methyl-accepting chemotaxis sensory transducer [Treponema
          succinifaciens DSM 2489]
 gi|328448166|gb|AEB13882.1| methyl-accepting chemotaxis sensory transducer [Treponema
          succinifaciens DSM 2489]
          Length = 698

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7  ENCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C+ C    C+ VCPV  C     +++      CI CG C   C   A
Sbjct: 21 EKCVNC--QRCIAVCPVKMCNNGSGDYVDFDEKLCIGCGSCIEACTHGA 67


>gi|320201404|gb|EFW75985.1| Electron transport protein HydN [Escherichia coli EC4100B]
          Length = 157

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 57  ACHQCEDAPCANVCPVDTISREHGHIFVEQSRCIGCKSCMLACPFGAME 105


>gi|332653498|ref|ZP_08419243.1| electron transport complex, RnfABCDGE type, B subunit
           [Ruminococcaceae bacterium D16]
 gi|332518644|gb|EGJ48247.1| electron transport complex, RnfABCDGE type, B subunit
           [Ruminococcaceae bacterium D16]
          Length = 266

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           T  CI C    C +VC  D      N   I  ++C  C +C  ECP+  I 
Sbjct: 213 TAGCIGC--MKCTKVCHFDAIKVENNVAYIDQEKCKGCQLCVKECPMGVIH 261



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + DC   C  D  +  +    +  ++C  CG C   CP   I
Sbjct: 143 GYGDCTRACAFDAIHIVDGIAKVDREKCTGCGACAAACPNHVI 185


>gi|300904523|ref|ZP_07122363.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
 gi|300403550|gb|EFJ87088.1| 4Fe-4S binding domain protein [Escherichia coli MS 84-1]
          Length = 208

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 120 ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 167


>gi|262369414|ref|ZP_06062742.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315482|gb|EEY96521.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 87

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  + GE    I+PD C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIFMGELIYEINPDLCTECIGHYDKPQCQLFCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPLD 62


>gi|217970625|ref|YP_002355859.1| cytochrome C oxidase accessory protein CcoG [Thauera sp. MZ1T]
 gi|217507952|gb|ACK54963.1| cytochrome c oxidase accessory protein CcoG [Thauera sp. MZ1T]
          Length = 465

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                +CIDCG+C   C
Sbjct: 260 DCIDCG--ICVQVCPTGIDIRDGLQY-----QCIDCGLCADAC 295



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 28/61 (45%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDE------------------------CIDCGVCEPECPV 52
           C  +CP   F      + I PD                         CIDCG+C   CP 
Sbjct: 218 CQHMCPYSRF----QGVMIDPDTANVAYDVKRGEPRGALRQSGDKGDCIDCGICVQVCPT 273

Query: 53  D 53
            
Sbjct: 274 G 274


>gi|218262823|ref|ZP_03477181.1| hypothetical protein PRABACTJOHN_02861 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223118|gb|EEC95768.1| hypothetical protein PRABACTJOHN_02861 [Parabacteroides johnsonii
           DSM 18315]
          Length = 262

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ VT+ CI C    C  +CP      +G   +    + C+ C  C   CPV AI+ 
Sbjct: 189 SFRVTDACISCGL--CERICPTGTISLQGGKPVW--ANTCVQCVACIHRCPVRAIEY 241


>gi|209521899|ref|ZP_03270571.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. H160]
 gi|209497674|gb|EDZ97857.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. H160]
          Length = 173

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD----TEPGL 63
           CI C  T C++ CPVD        +  +  + C  C +C P CPVD I          G 
Sbjct: 87  CIGC--TLCMQACPVDAIVGAPKQMHTVIAELCTGCDLCVPPCPVDCIAMLPVTGEATGW 144

Query: 64  ELWLKINSEYATQ 76
           + W +  ++ A  
Sbjct: 145 DAWSQSQADAART 157



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 81  VIDEQVCIGCTLCMQACPVDAI 102


>gi|193222326|emb|CAL61798.2| Putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 472

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI C  C   C
Sbjct: 265 DCIDC--TMCVQVCPVGIDIRDGLQY-----ECIGCAACVDAC 300



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 266 CIDCTMCVQVCPVG 279


>gi|91202378|emb|CAJ72017.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 396

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC  C   +CV  CP     +    + +   +CI C  C+  C   AI+
Sbjct: 327 NCTRC--YECVRNCPAGAMSKDTGKVEVDKKKCIGCFCCDEVCDFHAIE 373


>gi|320160247|ref|YP_004173471.1| NADH-quinone oxidoreductase subunit I [Anaerolinea thermophila
           UNI-1]
 gi|319994100|dbj|BAJ62871.1| NADH-quinone oxidoreductase chain I [Anaerolinea thermophila UNI-1]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP D  +              GE +     I+   CI CG CE  C
Sbjct: 46  EKCIGC--SLCAAACPADAIFVEAAENTDDERYSPGERYARVYEINMLRCIFCGFCEDAC 103

Query: 51  PVDAI 55
           P +AI
Sbjct: 104 PTEAI 108



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          ++CI C +C   CP DAI  +
Sbjct: 46 EKCIGCSLCAAACPADAIFVE 66


>gi|312116310|ref|YP_004013906.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221439|gb|ADP72807.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC
           17100]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAICPAQAITIEAGP 84


>gi|281417323|ref|ZP_06248343.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum JW20]
 gi|281408725|gb|EFB38983.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium thermocellum JW20]
          Length = 578

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V E C  CK   C+ + CP     +  + + I+   C+ CG+C   C  DAI+
Sbjct: 525 IVIEKCRKCK--MCMRIGCP--AIVDMGDHIEINDALCVGCGLCSKVCNFDAIE 574


>gi|150007171|ref|YP_001301914.1| ferredoxin [Parabacteroides distasonis ATCC 8503]
 gi|255015215|ref|ZP_05287341.1| ferredoxin [Bacteroides sp. 2_1_7]
 gi|256840546|ref|ZP_05546054.1| ferredoxin [Parabacteroides sp. D13]
 gi|149935595|gb|ABR42292.1| electron transport complex protein RnfB [Parabacteroides distasonis
           ATCC 8503]
 gi|256737818|gb|EEU51144.1| ferredoxin [Parabacteroides sp. D13]
          Length = 310

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 219 CIGCG--KCAKECPFEAITVTNNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DCV  C  D  +         +  ++C  CG C   CP + I+
Sbjct: 142 GYGDCVNACAFDAIHINPATGIAEVDEEKCTSCGACVKACPKNIIE 187


>gi|160874179|ref|YP_001553495.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS195]
 gi|160859701|gb|ABX48235.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS195]
 gi|315266411|gb|ADT93264.1| cytochrome c oxidase accessory protein CcoG [Shewanella baltica
           OS678]
          Length = 490

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +P L  ++
Sbjct: 289 DCVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACIDACNETMLKFDYKPNLIGYM 341

Query: 68  KIN 70
             N
Sbjct: 342 SEN 344


>gi|77918842|ref|YP_356657.1| pyruvate synthase subunit gamma [Pelobacter carbinolicus DSM 2380]
 gi|77544925|gb|ABA88487.1| pyruvate ferredoxin oxidoreductase, gamma subunit / pyruvate
           ferredoxin oxidoreductase, delta subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 310

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK--PDTEPGL 63
           E C  C    C   CP      GE+    I  + C  C VC  +CP  AIK  P+++   
Sbjct: 243 EKCRRCLQ--CCAWCPEGGIRVGEDGFPVIDYEHCKGCLVCAAQCPFKAIKVIPESQAKE 300

Query: 64  EL 65
           E 
Sbjct: 301 EQ 302


>gi|312136920|ref|YP_004004257.1| nitrite and sulphite reductase 4fe-4S region [Methanothermus
           fervidus DSM 2088]
 gi|311224639|gb|ADP77495.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermus
           fervidus DSM 2088]
          Length = 629

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           E C  C    C EVC V+           + + CI CG C   CP +
Sbjct: 503 EKCNGCG--RCAEVCKVEAIDIRGETSYTNYNLCIGCGKCIDACPNE 547



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP  C           G  +  I+ ++C  CG C   C V+AI
Sbjct: 475 ISGCPNKCVRPQIHDIGVAGVRYPLINEEKCNGCGRCAEVCKVEAI 520


>gi|257467686|ref|ZP_05631782.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Fusobacterium ulcerans ATCC 49185]
 gi|317061980|ref|ZP_07926465.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Fusobacterium ulcerans ATCC 49185]
 gi|313687656|gb|EFS24491.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Fusobacterium ulcerans ATCC 49185]
          Length = 371

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPV 52
          E+C  C  T C  +CP +      +   FL   I    CIDC +C+  CPV
Sbjct: 9  EDCCGC--TACYNICPKEAIKMEPDREGFLYPKIDQSLCIDCQLCKKVCPV 57



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA-------TQWPNITTK 83
           ++C  C  C   CP +AIK + +    L+ KI+              P I  K
Sbjct: 8  KEDCCGCTACYNICPKEAIKMEPDREGFLYPKIDQSLCIDCQLCKKVCPVINEK 61


>gi|169344698|ref|ZP_02865661.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
 gi|169297165|gb|EDS79279.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
          Length = 449

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|50426955|ref|XP_462080.1| DEHA2G12518p [Debaryomyces hansenii CBS767]
 gi|49657750|emb|CAG90566.1| DEHA2G12518p [Debaryomyces hansenii]
          Length = 607

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 11 VSTDRCKPKKCK-QECRKACPVVKTGKLCIEVTPTSKIAFISETLCIGCGICVKKCPFDA 69

Query: 55 I 55
          I
Sbjct: 70 I 70


>gi|68304948|gb|AAY89959.1| predicted DsrO [uncultured bacterium BAC13K9BAC]
          Length = 242

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C++  C +VCP    F   +  + ++   CI C  C   CP  A
Sbjct: 104 CQHCENPPCCDVCPTGASFKRVDGIVMVNQHTCIGCRYCMMACPFKA 150


>gi|78062946|ref|YP_372854.1| formate dehydrogenase beta subunit [Burkholderia sp. 383]
 gi|77970831|gb|ABB12210.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia sp. 383]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|18309258|ref|NP_561192.1| hydrogenase [Clostridium perfringens str. 13]
 gi|168207837|ref|ZP_02633842.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
 gi|18143934|dbj|BAB79982.1| probable hydrogenase [Clostridium perfringens str. 13]
 gi|170660851|gb|EDT13534.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
          Length = 449

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|330828774|ref|YP_004391726.1| iron-sulfur cluster-binding protein [Aeromonas veronii B565]
 gi|328803910|gb|AEB49109.1| Iron-sulfur cluster-binding protein [Aeromonas veronii B565]
          Length = 588

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C++VCP D        + I P  C   G C   CP  AI       
Sbjct: 233 CLDVCPTDALKPINGRIQIDPHLCQGFGSCASACPTGAIGYHQPDA 278



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
           +C LC    CV VCP    +          I  D CI CG+CE  CP  AI
Sbjct: 455 DCTLCMG--CVAVCPSRALHAVGHAPGLNFIEQD-CIQCGMCEKACPEQAI 502



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 18  VEVCPVDCFYEGENFLAIHPDEC-------IDCGVCEPECPVDAIKP 57
            E+C +   ++   +  + P+ C         C  C   CP DA+KP
Sbjct: 198 AELCALTGIFDKPRYFRLDPEACAFTARGVPGCSRCLDVCPTDALKP 244


>gi|323706138|ref|ZP_08117707.1| hydrogenase large subunit domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323534582|gb|EGB24364.1| hydrogenase large subunit domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 572

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I    CI CG C   CP +A
Sbjct: 10 NCRNC--YKCIRYCPVKAIKVNNEQAEIIEYRCIACGRCLNICPQNA 54


>gi|323475129|gb|ADX85735.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus REY15A]
 gi|323477861|gb|ADX83099.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           HVE10/4]
          Length = 167

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K 
Sbjct: 60  DVCIGC--TLCALICPADAMKMVTQSGKKFPQINYGRCVFCGFCVDVCPVDALKE 112


>gi|258542561|ref|YP_003187994.1| glutamate synthase (NADPH) small subunit [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633639|dbj|BAH99614.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636698|dbj|BAI02667.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639751|dbj|BAI05713.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642807|dbj|BAI08762.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645862|dbj|BAI11810.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648915|dbj|BAI14856.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651902|dbj|BAI17836.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654959|dbj|BAI20886.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 584

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 9   CILCKHT----DCVEVCPVDCFYE-GE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C +     +C   CP       G     A+  D C  C VC  +CP  AI+ D EP
Sbjct: 503 CLSCGNCFECDNCYASCPEQAITRLGPGKGYAVAMDMCTGCAVCAEQCPCHAIEMDPEP 561


>gi|255654750|ref|ZP_05400159.1| putative reductase [Clostridium difficile QCD-23m63]
 gi|296449496|ref|ZP_06891273.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296878181|ref|ZP_06902196.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
 gi|296261560|gb|EFH08378.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP08]
 gi|296430934|gb|EFH16766.1| nitroreductase fused to ferredoxin domain protein [Clostridium
          difficile NAP07]
          Length = 273

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          E C+ C    C   C V+     ++   +    CI+CG C   CP DAI+       E+ 
Sbjct: 7  EKCVGCG--MCESDCLVNAIKVKDDKAKVKNILCINCGHCMAICPTDAIEMQGFDKNEV- 63

Query: 67 LKINSEYATQWP 78
          ++ N E     P
Sbjct: 64 VEYNRESFELEP 75



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I+ ++C+ CG+CE +C V+AI
Sbjct: 1  MIDINLEKCVGCGMCESDCLVNAI 24


>gi|218691011|ref|YP_002399223.1| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli ED1a]
 gi|218428575|emb|CAR09502.2| putative oxidoreductase, 4Fe-4S ferredoxin-type subunit
           [Escherichia coli ED1a]
          Length = 162

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I   + PG 
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQANSARCIGCQSCVSTCPFGMITIQSLPGD 109


>gi|297585053|ref|YP_003700833.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Bacillus selenitireducens MLS10]
 gi|297143510|gb|ADI00268.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          selenitireducens MLS10]
          Length = 366

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 17 CVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          CV+VCP      + +  +      C DC +C  +CP DAI  + E
Sbjct: 36 CVDVCPSGAMTIDDKGKVVYDEAVCNDCHLCVHDCPTDAIYYENE 80


>gi|150399742|ref|YP_001323509.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012445|gb|ABR54897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 395

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VT++C+ C    CV  CPVD     E+   I  ++CI C +C   CP +AI 
Sbjct: 128 VTKDCVACGV--CVPECPVDAISI-EDTAVIDTNKCIYCTICSQTCPWNAIF 176



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTE 60
           V +E CI C+   CVEVCP        N L+I  P  C  C +C   CPVD IK + E
Sbjct: 194 VNSEECIGCE--KCVEVCPGSMIEYDANNLSIKLPVACPACSLCVESCPVDVIKLEVE 249



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 14/63 (22%)

Query: 9   CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDE-------CIDCGVCEPECPVDAIK 56
           C+LC+   CV++CPV+        +      I P+E       C+ CGVC PECPVDAI 
Sbjct: 91  CVLCE--KCVDICPVEIISLPGKIDKPKKDVIIPNEPIAVTKDCVACGVCVPECPVDAIS 148

Query: 57  PDT 59
            + 
Sbjct: 149 IED 151



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
          CI C    C   CP     E +  L  +  +C   G C+  CP  
Sbjct: 34 CIQC--FSCANACPTGALTERDGKLVFNGTKCDKDGACQKACPTG 76



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 12/63 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           T  CI C  T C + CP +  +                 ++ +ECI C  C   CP   I
Sbjct: 157 TNKCIYC--TICSQTCPWNAIFVAGKKPQKRQKNIKSFTVNSEECIGCEKCVEVCPGSMI 214

Query: 56  KPD 58
           + D
Sbjct: 215 EYD 217



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 17  CVEVCPVDCFYE----------GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CVE CPVD               E+ L    ++C  CG C  +CP  AI      GLEL
Sbjct: 235 CVESCPVDVIKLEVEYAPSKPVTEDGLMWLEEKCTYCGPCAVKCPTGAINVVNPKGLEL 293



 Score = 34.4 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 8/52 (15%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          ++  + C++C    C + CP +               CI C  C   CP  A
Sbjct: 5  FIQEDACLVCN--ACAKACPTEAIEIAPFK------TCIQCFSCANACPTGA 48


>gi|110802642|ref|YP_697592.1| hydrogenase subunit (ferredoxin) [Clostridium perfringens SM101]
 gi|110683143|gb|ABG86513.1| [Fe] hydrogenase [Clostridium perfringens SM101]
          Length = 449

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|308513312|ref|NP_953102.2| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           sulfurreducens PCA]
 gi|41152678|gb|AAR35429.2| indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
           [Geobacter sulfurreducens PCA]
 gi|298506164|gb|ADI84887.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Geobacter
           sulfurreducens KN400]
          Length = 605

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V++ C  C+       CP   + E    + +    C  CGVC   CP  AI+ 
Sbjct: 550 VSDACNGCRFCTTQFECPALVYDEETKRVVVDTLVCSKCGVCVDVCPRLAIEE 602


>gi|57234310|ref|YP_181645.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
 gi|57224758|gb|AAW39815.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
          Length = 136

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIK 56
           C  C    CV +CPVD F   E+   I+ D  +CI CG+C   CP  A++
Sbjct: 86  CTHCG--ACVTMCPVDAFSIDEDNREINFDAKKCIVCGICIQACPPRAME 133


>gi|78045112|ref|YP_358958.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997227|gb|ABB16126.1| iron-sulfur cluster-binding protein CooF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 144

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+
Sbjct: 59  EQCKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIR 109


>gi|322420605|ref|YP_004199828.1| hydrogenase 2 protein HybA [Geobacter sp. M18]
 gi|320126992|gb|ADW14552.1| hydrogenase 2 protein HybA [Geobacter sp. M18]
          Length = 308

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +C+ C+   CV VCPV    + +    +  + + CI C  C+  CP +  K   E
Sbjct: 113 SCMHCQKPSCVSVCPVSAMTKEKITGIVDYNKNTCIGCRYCQIACPYNIPKFQWE 167


>gi|320160607|ref|YP_004173831.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
 gi|319994460|dbj|BAJ63231.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
          Length = 310

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  + CI C    C  VCP     +      I  + C+ CG+C   C   A+    +P  
Sbjct: 235 VDEDKCIACG--TCAGVCPFGAI-QVNGHAVIVAESCMGCGICVRHCSQGALSLQRDPSR 291

Query: 64  ELWLKI 69
              L+I
Sbjct: 292 GEPLEI 297



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK 56
            +  D+CI CG C   CP  AI+
Sbjct: 234 VVDEDKCIACGTCAGVCPFGAIQ 256


>gi|283955171|ref|ZP_06372673.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni 414]
 gi|283793384|gb|EFC32151.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni 414]
          Length = 81

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++C+ C    C E CP +  YE      I PD C +C        C   CP + 
Sbjct: 1  MSLLITKDCVCCD--ACREECPDEAIYENSPIYVIDPDLCSECVNDFSEPACIVACPYEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 636

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           C  C    C+  CP      G+  +  I  ++C  CG C   CP 
Sbjct: 569 CKGCG--SCLRKCPATAIEGGKKTIHVIDQEKCTKCGTCIEACPA 611



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I P +C  CG C  +CP  AI+
Sbjct: 562 FHIDPAKCKGCGSCLRKCPATAIE 585


>gi|78185927|ref|YP_373970.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           luteolum DSM 273]
 gi|78165829|gb|ABB22927.1| dissimilatory sulfite reductase beta subunit [Chlorobium luteolum
           DSM 273]
          Length = 359

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV        +G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVDGKRSLMVDEAKCICCGACFGACPAMEINHPEHSKFAIWV 264


>gi|326919862|ref|XP_003206196.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Meleagris gallopavo]
          Length = 209

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 108 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 164



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 108 ERCIACKLCEAICPAQAITIEAEPRAD 134



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 149 CIYCGF--CQEACPVDAIVEGPNF 170


>gi|320530018|ref|ZP_08031092.1| putative formate dehydrogenase, beta subunit [Selenomonas artemidis
           F0399]
 gi|320137726|gb|EFW29634.1| putative formate dehydrogenase, beta subunit [Selenomonas artemidis
           F0399]
          Length = 274

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDT 59
            +  C   CP +      N  + I+ D+CI C  CE  CP    K D 
Sbjct: 81  GNPACAAGCPANAIDRNPNGTVVINEDKCIGCHYCEHNCPWHIPKIDE 128


>gi|309389880|gb|ADO77760.1| Fe-S cluster domain protein [Halanaerobium praevalens DSM 2228]
          Length = 445

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C  T+CV+ CP       +    I  D CIDC  C   C   A
Sbjct: 12 EKCEGC--TNCVKGCPTKAIRVHQGKAWIKEDLCIDCAECIRACEYHA 57


>gi|260654894|ref|ZP_05860382.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Jonquetella anthropi E3_33 E1]
 gi|260630396|gb|EEX48590.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Jonquetella anthropi E3_33 E1]
          Length = 621

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  + CI C+       CP   +      +++    C+ CGVC   CP  AI+   E
Sbjct: 561 VDKDTCIGCRICINQFNCPGLAYSAETKKVSVDERYCVSCGVCTAVCPHGAIRRRDE 617


>gi|167622434|ref|YP_001672728.1| formate dehydrogenase subunit beta [Shewanella halifaxensis
           HAW-EB4]
 gi|167352456|gb|ABZ75069.1| formate dehydrogenase, beta subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 300

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    C+  C       +  N +     D+C  CG C   CP D  + D     + 
Sbjct: 97  ACMHCADPACLTACSTKGAIVQRANGVVDFESDKCTGCGYCVSACPFDVPRLD-PIDQKA 155

Query: 66  W 66
           +
Sbjct: 156 Y 156


>gi|148643469|ref|YP_001273982.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
 gi|89953728|gb|ABD83344.1| FwdF [Methanobrevibacter smithii]
 gi|148552486|gb|ABQ87614.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
          Length = 365

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++C+ C    C E+CP +        G+  + I  D+C+ C VC+  CPVDAI
Sbjct: 173 DDCVYCG--ICQELCPAEAIVVDNTTGQESIVIDKDKCVYCLVCKRACPVDAI 223



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENF----LAIHPDECIDCGVCEPECPVDAIK 56
           + CI CK   C   CP D         E +N     +++  D+C+ CG+C+  CP +AI 
Sbjct: 134 DKCIYCK--RCETACPQDAITVMRKLPERQNLVSGEISVSDDDCVYCGICQELCPAEAIV 191

Query: 57  PDTEPGLE 64
            D   G E
Sbjct: 192 VDNTTGQE 199



 Score = 40.9 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDA 54
           E C+ C    C  VCP D     + F   L I  + C  CG C   CP DA
Sbjct: 253 ELCVYCGW--CEGVCPTDAVETNKPFKGTLEIDQEACQTCGACVDTCPCDA 301



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAI--HPDECIDCGVCEPECPVDAI 55
           E C  C    CV+ CP D          G+    I  H   CI C  C   CP  AI
Sbjct: 285 EACQTCG--ACVDTCPCDALAFPVSTAPGQRLDRITKHDQYCIRCKACAKVCPNGAI 339



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 20/72 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           + C+ C    C   CPVD                            I  + C+ CG CE 
Sbjct: 206 DKCVYCLV--CKRACPVDAISAVCRACSYGEYDFKAEDEVTTGSAVIDDELCVYCGWCEG 263

Query: 49  ECPVDAIKPDTE 60
            CP DA++ +  
Sbjct: 264 VCPTDAVETNKP 275



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 17/62 (27%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---------------ENFLAIHPDECIDCGVCEPECPVD 53
           C+LC    C  +CP+D                     ++  I  D+CI C  CE  CP D
Sbjct: 92  CVLCG--MCSGLCPIDALVLTIDDVPISEIEAYPHYNSYSKIDDDKCIYCKRCETACPQD 149

Query: 54  AI 55
           AI
Sbjct: 150 AI 151



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAI 55
            L+ +   C+ CGVCE  CPV+AI
Sbjct: 23 RKLSFNDQICLGCGVCESTCPVEAI 47


>gi|146295766|ref|YP_001179537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409342|gb|ABP66346.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 373

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T  C+ C    CV+ C        E     I  ++C+ CG C   C  +A     +    
Sbjct: 193 TSKCVGCG--MCVKSCAQFAITLSEKKKAVIDYEKCVGCGQCVAVCQFEAATVRWDEAAS 250

Query: 65  LWLKINSEYA 74
           +  +  +EYA
Sbjct: 251 IASEKIAEYA 260


>gi|325277470|ref|ZP_08143076.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51]
 gi|324097399|gb|EGB95639.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51]
          Length = 141

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C      E E+      F  I+   CI CG+CE  CP  AI+
Sbjct: 19 ERCVACNL--CAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 76

Query: 57 PDTEPGLELW 66
             +  +  +
Sbjct: 77 LTPDFEMAEF 86


>gi|313894232|ref|ZP_07827797.1| 4Fe-4S binding domain protein [Veillonella sp. oral taxon 158
          str. F0412]
 gi|313441056|gb|EFR59483.1| 4Fe-4S binding domain protein [Veillonella sp. oral taxon 158
          str. F0412]
          Length = 271

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       ++        CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRCGL--CVADCPTGLLVMSDDGPITGKGGCISCGHCISVCPTLALDSDL 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|262373255|ref|ZP_06066534.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262313280|gb|EEY94365.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 87

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C  VCP +  Y GE+   I P  C +C        C+  CPVD 
Sbjct: 1  MSLYITDECINCDV--CEPVCPNEAIYMGESIYEIDPALCTECVGHHDKPQCQLFCPVDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPLD 62


>gi|144898934|emb|CAM75798.1| Hdr-like menaquinol oxidoreductase subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 243

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV+VCP        +  + +    CI C  C   CP  A
Sbjct: 106 CQHCAKPPCVDVCPTGASMKRADGIVLVDRHICIGCRYCMMACPYKA 152


>gi|119899774|ref|YP_934987.1| iron-sulfur cluster-binding protein [Azoarcus sp. BH72]
 gi|119672187|emb|CAL96101.1| conserved hypothetical iron-sulfur cluster-binding protein
           [Azoarcus sp. BH72]
          Length = 701

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK---INSE 72
           +C+EVC  +      N + + P  C  CG C   CP  A+        +L L+   + +E
Sbjct: 328 NCIEVCSTEAIRADGNVITVDPYLCKGCGTCSTVCPSGALAFQYPRVADLGLQVKTLLAE 387

Query: 73  YAT 75
           YA 
Sbjct: 388 YAA 390



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDA 54
           TE C LC    C   CP        +   +      C+ CG+C   CP  A
Sbjct: 566 TEACTLC--MACTGACPAGALRAAGDSYRLDFIEKNCLQCGLCVSSCPETA 614



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C+ C  C   CP  AI  D +  L
Sbjct: 198 IDLDLCVRCHACVKACPEGAIGYDLQVDL 226


>gi|85857985|ref|YP_460187.1| ferredoxin [Syntrophus aciditrophicus SB]
 gi|85721076|gb|ABC76019.1| sodium-translocating NADH-quinone reductase, subunit [Syntrophus
           aciditrophicus SB]
          Length = 287

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
              DCV  CP        +F  I  ++C+ CG C   CP + I+  T     +W+
Sbjct: 149 GFGDCVAACPFGAITLDNSFPVIDVEKCVGCGSCVRTCPKNVIEI-TPSSARVWV 202



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI-------HPDE---------CIDCGVCEPEC 50
           E C+ C    CV  CP +      +   +        P +         CI C +C   C
Sbjct: 174 EKCVGCG--SCVRTCPKNVIEITPSSARVWVPCSTKDPGKAVRSVCEVGCITCKMCIKAC 231

Query: 51  PVDAIKPD 58
           P  A++ +
Sbjct: 232 PAGAVRVE 239


>gi|134296425|ref|YP_001120160.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4]
 gi|166918790|sp|A4JGC2|NUOI_BURVG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|134139582|gb|ABO55325.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4]
          Length = 162

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPAMAITIESE 83


>gi|320101037|ref|YP_004176629.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753389|gb|ADV65147.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           mucosus DSM 2162]
          Length = 403

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C +VC  D  +     G+    I   +C  CG+C   CP  AI  
Sbjct: 350 CIGCGF--CEQVCNYDAVHVEDAGGKRVARIDLTKCYGCGLCTSVCPTRAIHF 400



 Score = 37.1 bits (85), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDT 59
            +   +CI CG CE  C  DA+  + 
Sbjct: 344 VVDEKKCIGCGFCEQVCNYDAVHVED 369


>gi|229514922|ref|ZP_04404382.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21]
 gi|229347627|gb|EEO12586.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21]
          Length = 553

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG       + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPADTQKFIE 247



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|222445705|ref|ZP_03608220.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349746|ref|ZP_05975163.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanobrevibacter smithii DSM 2374]
 gi|222435270|gb|EEE42435.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861701|gb|EFC93999.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanobrevibacter smithii DSM 2374]
          Length = 365

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++C+ C    C E+CP +        G+  + I  D+C+ C VC+  CPVDAI
Sbjct: 173 DDCVYCG--ICQELCPAEAIVVDNTTGQESIVIDKDKCVYCLVCKRACPVDAI 223



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 12/68 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENF----LAIHPDECIDCGVCEPECPVDAIK 56
           + CI CK   C   CP D         E +N     +++  D+C+ CG+C+  CP +AI 
Sbjct: 134 DKCIYCK--RCETACPQDAITVMRKLPERQNLVSGEISVSDDDCVYCGICQELCPAEAIV 191

Query: 57  PDTEPGLE 64
            D   G E
Sbjct: 192 VDNTTGQE 199



 Score = 40.9 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDA 54
           E C+ C    C  VCP D     + F   L I  + C  CG C   CP DA
Sbjct: 253 ELCVYCGW--CEGVCPTDAVETNKPFKGTLEIDQEACQTCGACVDTCPCDA 301



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAI--HPDECIDCGVCEPECPVDAI 55
           E C  C    CV+ CP D          G+    I  H   CI C  C   CP  AI
Sbjct: 285 EACQTCG--ACVDTCPCDALAFPVSTAPGQRLDRITKHDQYCIRCKACAKVCPNGAI 339



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 20/72 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           + C+ C    C   CPVD                            I  + C+ CG CE 
Sbjct: 206 DKCVYCLV--CKRACPVDAISAVCRACSYGEYDFKAEDEVTTGSAVIDDELCVYCGWCEG 263

Query: 49  ECPVDAIKPDTE 60
            CP DA++ +  
Sbjct: 264 VCPTDAVETNKP 275



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 17/62 (27%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---------------ENFLAIHPDECIDCGVCEPECPVD 53
           C+LC    C  +CP+D                     ++  I  D+CI C  CE  CP D
Sbjct: 92  CVLCG--MCSGLCPIDALVLTIDDVPISEIEAYPHYNSYSKIDDDKCIYCKRCETACPQD 149

Query: 54  AI 55
           AI
Sbjct: 150 AI 151



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAI 55
            L+ +   C+ CGVCE  CPV+AI
Sbjct: 23 RKLSFNDQICLGCGVCESTCPVEAI 47


>gi|162448798|ref|YP_001611165.1| NADH dehydrogenase I chain I [Sorangium cellulosum 'So ce 56']
 gi|161159380|emb|CAN90685.1| NADH dehydrogenase I chain I [Sorangium cellulosum 'So ce 56']
          Length = 224

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 18/67 (26%)

Query: 9   CILCKHTDCVEVCPVDCFY-------EGEN---------FLAIHPDECIDCGVCEPECPV 52
           C+ C    C   CP  C         +G+             I    C+ CG C   CPV
Sbjct: 106 CVACL--CCSTACPAQCIAIEPAEYPDGDRRKGYERYPSSFVIDELRCVFCGFCVEACPV 163

Query: 53  DAIKPDT 59
           DAI+ DT
Sbjct: 164 DAIRMDT 170


>gi|154494980|ref|ZP_02033985.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC
           43184]
 gi|154085530|gb|EDN84575.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC
           43184]
          Length = 257

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           ++ VT+ CI C    C  +CP               D C+ C  C   CPV AI+ 
Sbjct: 189 SFRVTDVCISCGL--CERICPTGTISMQAGKPVWT-DTCVQCVACIHRCPVRAIEY 241


>gi|134094848|ref|YP_001099923.1| putative ferredoxin transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 466

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCPV               ECI C  C   C
Sbjct: 259 DCIDC--TMCVQVCPVGIDIRDGLQY-----ECIGCAACVDAC 294



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CPV 
Sbjct: 260 CIDCTMCVQVCPVG 273


>gi|83590723|ref|YP_430732.1| sigma-54 dependent trancsriptional regulator [Moorella
          thermoacetica ATCC 39073]
 gi|83573637|gb|ABC20189.1| sigma54 specific transcriptional regulator with PAS sensor, Fis
          family [Moorella thermoacetica ATCC 39073]
          Length = 752

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T  C  C    CV  CPV      +    +  + CI CG+C   C   A
Sbjct: 9  TGRCRQC--YSCVRNCPVKAIRINKGQAEVIAERCISCGMCLAFCSQGA 55


>gi|51891850|ref|YP_074541.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855539|dbj|BAD39697.1| anaerobic dimethyl sulfoxide reductase subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 185

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ +C  C    CV  CP    +   E+ L  +  + CI C  C   CP  A     E G
Sbjct: 54  ISISCNHCSDPRCVTNCPTGASYKREEDGLVLVDQEACIGCQYCVWSCPYGARHYLEEQG 113


>gi|312126778|ref|YP_003991652.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776797|gb|ADQ06283.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T  C+ C    CV+ C        E     I  ++C+ CG C   C   A     +    
Sbjct: 193 TSKCVGCG--MCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGAATVKWDEAAS 250

Query: 65  LWLKINSEYA 74
           +  +  +EYA
Sbjct: 251 IASEKIAEYA 260


>gi|310778436|ref|YP_003966769.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747759|gb|ADO82421.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 890

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 14/70 (20%)

Query: 9   CILCKHTDCVEVC------------PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    CV+VC            PV         + I    C  CG C   CPV A++
Sbjct: 144 CISCG--KCVKVCETLQCNNVLKLDPVTKKVLVSEGVKIDESNCAFCGNCVSVCPVGALQ 201

Query: 57  PDTEPGLELW 66
           P  +     W
Sbjct: 202 PKEKTRFRKW 211


>gi|298674990|ref|YP_003726740.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287978|gb|ADI73944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 132

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           + C+ C    CV +CP + F   EN+   + P+ CI CG C   CP  A
Sbjct: 77  DECVDCG--ACVSICPKNVFKIDENWNVNMEPENCIQCGTCIKTCPHGA 123



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
            DEC+DCG C   CP +  K D  
Sbjct: 75 DDDECVDCGACVSICPKNVFKIDEN 99


>gi|295107126|emb|CBL04669.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 216

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           C  C +  C+ VCP     + ++ +  +    CI C  C   CP D
Sbjct: 74  CQHCGNPPCLGVCPTGATKKRDDGIVYVDNSLCIGCRACVMACPYD 119


>gi|288961336|ref|YP_003451675.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
 gi|288913644|dbj|BAI75131.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
          Length = 158

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + V   C  CK   CV VC     +       + +  D+CI C +C   CP      D
Sbjct: 47  FSVPMMCQQCKDAACVTVCMPRAMHRNPANGQVELDADKCIGCKMCVQACPFGCASWD 104


>gi|315499798|ref|YP_004088601.1| NADH-quinone oxidoreductase, chain i [Asticcacaulis excentricus CB
           48]
 gi|315417810|gb|ADU14450.1| NADH-quinone oxidoreductase, chain I [Asticcacaulis excentricus CB
           48]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 62 ERCIACKLCEAICPAQAITIEAEPRED 88



 Score = 34.0 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGL--CQEACPVDAIVEGPNF 124


>gi|238028215|ref|YP_002912446.1| ferredoxin [Burkholderia glumae BGR1]
 gi|237877409|gb|ACR29742.1| Iron-sulfur cluster-binding protein [Burkholderia glumae BGR1]
          Length = 279

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEP 61
           + CI C  T C++ CPVD        +  +  + C  C +C P CPVD I          
Sbjct: 85  QLCIGC--TLCMQACPVDAIVGAPKQMHTVVAELCTGCDLCVPPCPVDCIAMIPVTGERT 142

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 143 GWDAWSQQQADAAR 156



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 81  VIDEQLCIGCTLCMQACPVDAI 102


>gi|282599649|ref|ZP_05971360.2| putative polyferredoxin [Providencia rustigianii DSM 4541]
 gi|282568098|gb|EFB73633.1| putative polyferredoxin [Providencia rustigianii DSM 4541]
          Length = 312

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 4  VVTENCI-----LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V+ + C+          +C   CPVD    G     I    C  CG C   CPVDAI+
Sbjct: 32 VINDRCVRKRLKNSLCENCATNCPVDAISFGFMDAKIDDQLCYQCGNCLFSCPVDAIE 89



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CILC    C +VC        ++   +    C  C  C+  C
Sbjct: 216 SCILCG--ACAKVCDEQAIEIEDHQFKVDEKRCTGCMSCQVVC 256



 Score = 33.6 bits (76), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDT 59
            + +    CI CG C   C   AI+ + 
Sbjct: 209 QIELDAASCILCGACAKVCDEQAIEIED 236


>gi|254421090|ref|ZP_05034814.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
 gi|196187267|gb|EDX82243.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 118



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 62 ERCIACKLCEAICPAQAITIEAEPRAD 88



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG N   
Sbjct: 103 CIYCGL--CQEACPVDAIVEGPNSEY 126


>gi|169351255|ref|ZP_02868193.1| hypothetical protein CLOSPI_02034 [Clostridium spiroforme DSM
          1552]
 gi|169292317|gb|EDS74450.1| hypothetical protein CLOSPI_02034 [Clostridium spiroforme DSM
          1552]
          Length = 386

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
            NC  C    CV+ CP+D        + I  ++CI+C +C   C
Sbjct: 9  GSNCKKC--IKCVKECPMDAISIVNEQVIIDENKCINCDICIQAC 51


>gi|227828038|ref|YP_002829818.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.14.25]
 gi|227830775|ref|YP_002832555.1| NADH dehydrogenase subunit I [Sulfolobus islandicus L.S.2.15]
 gi|229579671|ref|YP_002838070.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.G.57.14]
 gi|229581663|ref|YP_002840062.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.N.15.51]
 gi|229585307|ref|YP_002843809.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.27]
 gi|238620268|ref|YP_002915094.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.4]
 gi|284998289|ref|YP_003420057.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.D.8.5]
 gi|227457223|gb|ACP35910.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.S.2.15]
 gi|227459834|gb|ACP38520.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           M.14.25]
 gi|228010386|gb|ACP46148.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012379|gb|ACP48140.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020357|gb|ACP55764.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           M.16.27]
 gi|238381338|gb|ACR42426.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus M.16.4]
 gi|284446185|gb|ADB87687.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.D.8.5]
          Length = 167

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K 
Sbjct: 60  DVCIGC--TLCALICPADAMKMVTQSGKKFPQINYGRCVFCGFCVDVCPVDALKE 112


>gi|157377344|ref|YP_001475944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319718|gb|ABV38816.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 181

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDA--IKPDT 59
           +C+ C++  C+ VCP   ++  ++ + +   ++C  CG+C   CP  A  I+ D 
Sbjct: 60  SCMHCENPACLMVCPAKAYHVRDDGIVVLDREKCTGCGLCATACPYSAVSIREDD 114


>gi|149277726|ref|ZP_01883866.1| probable ferredoxin [Pedobacter sp. BAL39]
 gi|149231414|gb|EDM36793.1| probable ferredoxin [Pedobacter sp. BAL39]
          Length = 464

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +  +CI CK   CV+VCP       G         EC++C  C   C
Sbjct: 260 IAGDCIDCKL--CVDVCPTGIDIRNGTQM------ECVNCTACIDAC 298


>gi|167646786|ref|YP_001684449.1| NADH dehydrogenase subunit I [Caulobacter sp. K31]
 gi|167349216|gb|ABZ71951.1| NADH-quinone oxidoreductase, chain I [Caulobacter sp. K31]
          Length = 164

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIEAEPRDDGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 119



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIEAEPRDD 89


>gi|219670687|ref|YP_002461122.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540947|gb|ACL22686.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 192

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           C  C+   CV  CP    + G++    H  D CI C  C   CP    + 
Sbjct: 58  CNHCEEAKCVRGCPTGAMHFGDDGTVQHDKDMCIGCKYCVWNCPYSVPQY 107


>gi|194336249|ref|YP_002018043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308726|gb|ACF43426.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 63

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVD 53
          M + +T+ C  C    C   CPV+    GE+   +    C DC        C   CPVD
Sbjct: 1  MAHRITDTCTYCG--ACEPECPVNAITPGEDIYVVDEAVCTDCKGYYDEAACVAVCPVD 57



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          D C  CG CEPECPV+AI P  +
Sbjct: 7  DTCTYCGACEPECPVNAITPGED 29


>gi|119358331|ref|YP_912975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355680|gb|ABL66551.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 188

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C +  CV  CP    +  E+    I+   C  C  C   CP DA
Sbjct: 58  SERCQHCDNAPCVTYCPTRASHYAEDGTVQINRSRCTGCKACLAACPYDA 107


>gi|332703001|ref|ZP_08423089.1| response regulator receiver protein [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332553150|gb|EGJ50194.1| response regulator receiver protein [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1143

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 9    CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            C LC    C++VCP        +   + +    C  CG C   CP  A
Sbjct: 1075 CSLCG--RCIDVCPYGARSMDTDHQRVVVDELLCQGCGACAAVCPNSA 1120



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 20/71 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECIDCG 44
           +V    CI C    C EVCPV   D F  G                N   +  D C  C 
Sbjct: 111 FVDPSRCIGCG--ICAEVCPVRVKDEFNAGLTERSAIHLPVPQAIPNHYVVDLDNCQRCW 168

Query: 45  VCEPECPVDAI 55
            C   CP  A+
Sbjct: 169 QCHKACPTGAV 179


>gi|324505057|gb|ADY42177.1| ATP-binding cassette sub-family E member 1 [Ascaris suum]
          Length = 609

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPV-----DCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
          + C    C    C + CPV      C     N     I    CI CG+C  +CP DAIK
Sbjct: 22 DRCKPKNCG-LACKKSCPVVRMGKQCIVVETNSKMAEISETLCIGCGICVKKCPYDAIK 79


>gi|302343180|ref|YP_003807709.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639793|gb|ADK85115.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 454

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 18/60 (30%)

Query: 6   TENCILCKHTDCVEVCPVDCF-------------YEGENFLAIHPDECIDCGVCEPECPV 52
            E CI C    CV+VCPV+                E  +   +H   CI+CG C   CP 
Sbjct: 379 GEPCIHCG--RCVQVCPVNLIPAELGKMCQYGHYEEAADKDLMH---CIECGCCAYVCPA 433


>gi|288871693|ref|ZP_06410268.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288862395|gb|EFC94693.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 88

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          Y +   C  C    C+ VCP +C  +G  F  I  + CI CG C   CP  AIK
Sbjct: 36 YKILAVCNQCG--KCLSVCPSNCIEQGPPF-QIREENCIHCGTCYKTCPYAAIK 86


>gi|282882494|ref|ZP_06291115.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Peptoniphilus lacrimalis 315-B]
 gi|281297636|gb|EFA90111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Peptoniphilus lacrimalis 315-B]
          Length = 310

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI CK   C + C +D    +  N      +ECI CG+C   CPV+AI+ 
Sbjct: 242 DKCIGCK--KCYKACKMDVDVCKDPNH-----NECIRCGLCINVCPVEAIEF 286


>gi|289191855|ref|YP_003457796.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938305|gb|ADC69060.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 167

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 20/85 (23%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-------------IHPDECIDCGVCEPEC 50
           V+ E CI C+   C  VCP                         I+P++CI C  C   C
Sbjct: 52  VIEELCIGCEG--CANVCPTKAIEMIPIEPVKITENYVKDKIPKINPEKCIYCLYCHDFC 109

Query: 51  PVDAIKPDTEPGL-----ELWLKIN 70
           PV ++  +  P       E +++++
Sbjct: 110 PVFSVFNEISPIHPRDVGEEYIEVD 134


>gi|253698808|ref|YP_003019997.1| NADH dehydrogenase subunit I [Geobacter sp. M21]
 gi|251773658|gb|ACT16239.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
          Length = 176

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGEN         I+   CI CG+C   CP  AI
Sbjct: 54  AERCVACYL--CSGACPVDCISMAAAEGENGRRYAAWFRINFSRCILCGMCAEACPTLAI 111

Query: 56  K 56
           +
Sbjct: 112 Q 112


>gi|218780619|ref|YP_002431937.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762003|gb|ACL04469.1| Putative uncharacterized protein (contains partial HdrA and MvhD
           domains) [Desulfatibacillum alkenivorans AK-01]
          Length = 532

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V  + C +C    C   CP    Y  ++   I    C  CG+C  ECP DAI+     
Sbjct: 332 AFVDVDKCTVCL--TCYRCCPHGAIYW-DSRAIIAESACQGCGICASECPNDAIQLGDYA 388

Query: 62  GL 63
             
Sbjct: 389 DD 390


>gi|148926447|ref|ZP_01810130.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205355994|ref|ZP_03222762.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni CG8421]
 gi|145844610|gb|EDK21716.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205346118|gb|EDZ32753.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni CG8421]
 gi|307747290|gb|ADN90560.1| Ferredoxin [Campylobacter jejuni subsp. jejuni M1]
          Length = 82

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++C+ C    C E CP +  YE      I PD C +C        C   CP + 
Sbjct: 2  MSLLITKDCVCCD--ACREECPDEAIYENSPIYVIDPDLCSECVNDFSEPACIVACPYEC 59

Query: 55 IKPDTE 60
          I PD +
Sbjct: 60 IIPDPD 65


>gi|332296158|ref|YP_004438081.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179261|gb|AEE14950.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 676

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C    C+ +CP        Y  +    I P  C  CGVC   CP  AI
Sbjct: 604 VNPDKCSGCG--ICLPLCPYSAISWKEYGDKKRAHIDPALCTGCGVCASACPSRAI 657



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 31  NFLAIHPDECIDCGVCEPECP 51
               I  D+C  CG C   CP
Sbjct: 242 KQTYIDWDKCTGCGACVEACP 262


>gi|312137143|ref|YP_004004480.1| ABC transporter [Methanothermus fervidus DSM 2088]
 gi|311224862|gb|ADP77718.1| ABC transporter related protein [Methanothermus fervidus DSM
          2088]
          Length = 592

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 18/92 (19%)

Query: 7  ENCI--LCKHTDCVEVCPVDCFYEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
          + C    C +  C+E CP      GE+ + IH            C  CG+C  +CP DAI
Sbjct: 10 DRCQPKKCGYL-CLEYCPG--VRMGEDTIVIHKKTKKPIISEKLCSGCGICVKKCPFDAI 66

Query: 56 K----PDTEPGLELWLKINSEYATQWPNITTK 83
               P+           N       P +T K
Sbjct: 67 NIINLPEALGDPVHRYGENMFELFGLPIVTEK 98


>gi|308271652|emb|CBX28260.1| hypothetical protein N47_G35840 [uncultured Desulfobacterium sp.]
          Length = 1087

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 9    CILCKHTDCVEVCPVDC---FYEGENFL----AIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C  C    CV +CP        E   F      I+P  C  CG+C   C   AI+     
Sbjct: 1015 CSSCGV--CVSICPYSAPSFIEESARFFPGKAQINPVLCKGCGLCVASCRSGAIRLKGFD 1072

Query: 62   GLELWLKI 69
              +++ +I
Sbjct: 1073 NDQIFAQI 1080



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 13/63 (20%)

Query: 7   ENCILCKHTDCVEVCPVD---CFYEGENF--------LAIHPDECIDCGVCEPECPVDAI 55
           + CILC    C  +C                        I  + C+ CG C   CP   I
Sbjct: 121 DTCILCGL--CTRICAKMGNSAISLTGRGVEMKVDTPFHIQTEACLSCGACASVCPTGHI 178

Query: 56  KPD 58
             +
Sbjct: 179 TLE 181


>gi|288919210|ref|ZP_06413547.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Frankia sp. EUN1f]
 gi|288349380|gb|EFC83620.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Frankia sp. EUN1f]
          Length = 1175

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 36/125 (28%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-------------------------GENFLAIH--PD 38
            E C+ C    C  VCP                               G+  L I   PD
Sbjct: 684 AELCVSCG--KCAIVCPHAAIRMTLFDPARLADAPATFRHTRPKDPRLGDYRLTIQVAPD 741

Query: 39  ECIDCGVCEPECPVDAIKP------DTEPGLELWLKINSEYATQWPNITTKKESLPSAAK 92
           +C  CGVC   CP  + +       D       +++  + +A     +   + +L SA  
Sbjct: 742 DCTGCGVCVEACPAKSREMPDHRALDMVDAASRFVEERASWA-FHETLPAVEPALASATT 800

Query: 93  MDGVK 97
           + G +
Sbjct: 801 VRGSQ 805



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 36  HPDECIDCGVCEPECPVDAIK 56
             + C+ CG C   CP  AI+
Sbjct: 683 DAELCVSCGKCAIVCPHAAIR 703


>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
          Length = 632

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C + CP       +          + I  ++C+ CG C   C   AI
Sbjct: 575 DKCIGCG--MCAKQCPASAITRTDYIAPGKKLAAMEIDKNKCVKCGACIATCKFKAI 629



 Score = 41.7 bits (97), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I  D+CI CG+C  +CP  AI
Sbjct: 570 FEIEKDKCIGCGMCAKQCPASAI 592


>gi|260574770|ref|ZP_05842773.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2]
 gi|259023187|gb|EEW26480.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2]
          Length = 164

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRAD 89



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|261856462|ref|YP_003263745.1| cytochrome C oxidase accessory protein CcoG [Halothiobacillus
           neapolitanus c2]
 gi|261836931|gb|ACX96698.1| cytochrome c oxidase accessory protein CcoG [Halothiobacillus
           neapolitanus c2]
          Length = 473

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIK 56
           T +CI CK   CV+VCP          L      CI CG+C   C         P   I+
Sbjct: 268 TGDCIDCKL--CVQVCPTGIDIRDGLQL-----ACISCGLCIDACNEIMHKRGWPEGLIR 320

Query: 57  PDTEPGLE 64
             +E  LE
Sbjct: 321 YASEKELE 328


>gi|224009321|ref|XP_002293619.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220971019|gb|EED89355.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 150

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP         E E+         I   +CI CG C+  CPVDAI
Sbjct: 49  ERCIACKL--CEAACPAQAITIDAEEREDGARRTTRYDIDMTKCIYCGFCQEACPVDAI 105



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D E   +
Sbjct: 49 ERCIACKLCEAACPAQAITIDAEERED 75


>gi|269864755|ref|XP_002651685.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
 gi|220064068|gb|EED42370.1| RNase L inhibitor [Enterocytozoon bieneusi H348]
          Length = 205

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 14 HTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAI 55
            +C   CPV+       E      +    CI CG CE +CP +AI
Sbjct: 27 AAECKRYCPVNRIGKKCIEIPKKAVVDETLCIGCGQCEKKCPFNAI 72


>gi|167768634|ref|ZP_02440687.1| hypothetical protein CLOSS21_03193 [Clostridium sp. SS2/1]
 gi|167710158|gb|EDS20737.1| hypothetical protein CLOSS21_03193 [Clostridium sp. SS2/1]
 gi|291560581|emb|CBL39381.1| Coenzyme F420-reducing hydrogenase, beta subunit
          [butyrate-producing bacterium SSC/2]
          Length = 413

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGEN---FLA--IHPDECIDCGVCEPECPVD 53
          NC  C    C+ +CP +     E+   FL   I  ++C+ CG C+  C   
Sbjct: 14 NCCACG--ACMNICPKNAIKMQEDEYGFLYPQIDENKCVQCGACQKVCAYQ 62


>gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
          43184]
 gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
          43184]
          Length = 301

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    CVE CP          +      C  CG+C   CP  A++
Sbjct: 52 CIGC--RTCVEACPEQALTLTPEGIVTDGARCTLCGICAEVCPAMAME 97


>gi|186473336|ref|YP_001860678.1| formate dehydrogenase, beta subunit [Burkholderia phymatum STM815]
 gi|184195668|gb|ACC73632.1| formate dehydrogenase, beta subunit [Burkholderia phymatum STM815]
          Length = 312

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCIAGCPFN 146


>gi|78043414|ref|YP_360379.1| sigma-54 dependent transcriptional regulator [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995529|gb|ABB14428.1| sigma-54 dependent transcriptional regulator [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 732

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 4  VVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +VT +   CK    CV  CPV      E    +  + CI CG C   C   A
Sbjct: 6  IVTTDKEKCKACYACVRNCPVKAIKIEEQKAEVLEERCIACGNCVRVCSQGA 57



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEPGL 63
            ++C  C  C   CPV AIK + +   
Sbjct: 10 DKEKCKACYACVRNCPVKAIKIEEQKAE 37


>gi|78067038|ref|YP_369807.1| NADH dehydrogenase subunit I [Burkholderia sp. 383]
 gi|115502521|sp|Q39EF3|NUOI_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77967783|gb|ABB09163.1| NADH dehydrogenase subunit I [Burkholderia sp. 383]
          Length = 162

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPAMAITIESE 83


>gi|16126185|ref|NP_420749.1| NADH dehydrogenase subunit I [Caulobacter crescentus CB15]
 gi|81782641|sp|Q9A6Y4|NUOI_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|13423401|gb|AAK23917.1| NADH dehydrogenase I, I subunit [Caulobacter crescentus CB15]
          Length = 163

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 14/75 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI 
Sbjct: 62  ERCIACKL--CEAICPAQAITIEAEPREDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIV 119

Query: 57  --PDTEPGLELWLKI 69
             P+TE   E   ++
Sbjct: 120 EGPNTEFATETREEL 134


>gi|56478503|ref|YP_160092.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
 gi|56314546|emb|CAI09191.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
          Length = 468

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP     +      I     +C+DC +C   C    I  D 
Sbjct: 74  CRQCADPKCVTVCPAGALAKDGASGVIGWDASKCVDCLLCTVGCAYGGIALDE 126


>gi|54298764|ref|YP_125133.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Paris]
 gi|148361094|ref|YP_001252301.1| NADH dehydrogenase I subunit I [Legionella pneumophila str. Corby]
 gi|296108424|ref|YP_003620125.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy]
 gi|81679378|sp|Q5X1B5|NUOI_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918793|sp|A5IHV5|NUOI_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|53752549|emb|CAH13981.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str.
           Paris]
 gi|148282867|gb|ABQ56955.1| NADH dehydrogenase I, I subunit [Legionella pneumophila str. Corby]
 gi|295650326|gb|ADG26173.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy]
          Length = 166

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI+CG+CE  CPVD+I
Sbjct: 65  ERCIACKL--CEAVCPALAITIESEQREDGSRRTTRYDIDMFKCINCGLCEESCPVDSI 121



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 65 ERCIACKLCEAVCPALAITIESEQRED 91


>gi|52842979|ref|YP_096778.1| NADH dehydrogenase subunit I [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295610|ref|YP_128025.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Lens]
 gi|81376647|sp|Q5ZRU6|NUOI_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81679125|sp|Q5WT28|NUOI_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|52630090|gb|AAU28831.1| NADH dehydrogenase I, I subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53755442|emb|CAH16938.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str.
           Lens]
          Length = 166

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI+CG+CE  CPVD+I
Sbjct: 65  ERCIACKL--CEAVCPALAITIESEQRDDGSRRTTRYDIDMFKCINCGLCEESCPVDSI 121



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 65 ERCIACKLCEAVCPALAITIESEQRDD 91


>gi|150015587|ref|YP_001307841.1| glycyl-radical activating family protein [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902052|gb|ABR32885.1| glycyl-radical enzyme activating protein family [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C H  C++VC  +     +N + I  + CI C  C+  CP  A+  + E
Sbjct: 57  CTQCLH--CIDVCQNNAISLNDNHIKIDSNNCISCFACKNSCPHKALSAEGE 106


>gi|330817875|ref|YP_004361580.1| Iron-sulfur cluster-binding protein [Burkholderia gladioli BSR3]
 gi|327370268|gb|AEA61624.1| Iron-sulfur cluster-binding protein [Burkholderia gladioli BSR3]
          Length = 308

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP----DTEP 61
           + CI C  T C++ CPVD        +  +  + C  C +C   CPVD I          
Sbjct: 85  QLCIGC--TLCIQACPVDAIVGAPKQMHTVVAELCTGCDLCVAPCPVDCIAMIPVTGEHT 142

Query: 62  GLELWLKINSEYAT 75
           G + W +  ++ A 
Sbjct: 143 GWDAWTQQQADAAR 156



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    CI C +C   CPVDAI
Sbjct: 81  VIDEQLCIGCTLCIQACPVDAI 102


>gi|304315374|ref|YP_003850521.1| energy-converting hydrogenase B, subunit K [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588833|gb|ADL59208.1| energy-converting hydrogenase B, subunit K [Methanothermobacter
           marburgensis str. Marburg]
          Length = 447

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E+CI C    C E+CPVD        + +  D+CI C  C   CP DAI
Sbjct: 322 VSEDCISCGV--CSEICPVDAITLKRGSIEVDTDKCILCEKCGIHCPADAI 370



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C+E+CP D   + E+ L  +  D+CI CG C   CP  A+  + E
Sbjct: 392 CIGCGL--CLEICPEDAISKDESGLMMVDEDKCIHCGACSNICPARAVLFERE 442



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CILC+   C   CP D               F  I P  CI CG+C   CP DAI
Sbjct: 350 VDTDKCILCE--KCGIHCPADAIPKTTMKKRRITGGFTLIDPRLCIGCGLCLEICPEDAI 407

Query: 56  KPDT 59
             D 
Sbjct: 408 SKDE 411



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C +VCPV    +    L I P++C  C  C  ECP  AI  D 
Sbjct: 175 CTEC--RVCEDVCPVGAIED----LEIDPEKCTLCLKCLRECPSRAIYVDD 219



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +CI C    C+E CP             +   +C  CGVCE  CPV++I+ + 
Sbjct: 32 SCITCG--ACMEACPNKAIRRNRYGGYVVDRAKCNACGVCEMTCPVNSIRIED 82



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+T+   C LC    C   CP        +        C +C VCE  CPV AI+ 
Sbjct: 144 VITDPEKCTLC--RRCQYYCPTGAIIVDTDEGV-----CTECRVCEDVCPVGAIED 192



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+  CP +     +         CI CG C   CP  AI+
Sbjct: 14 CIRACPTEAIRMIDGRAF----SCITCGACMEACPNKAIR 49



 Score = 34.4 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C  C  T C++ CP       +  L      C+ CG C   C V
Sbjct: 267 CRDCDETPCIDACPAGTLRMVDGELR---GYCVSCGRCVRACDV 307


>gi|326203606|ref|ZP_08193470.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325986426|gb|EGD47258.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 578

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++ + C  C    C+++ CP     E  + L I+P  C+ C +C   C   AI+
Sbjct: 525 IIQDKCKKC--RMCMKIGCP--AIVEKGDHLEINPALCVGCKLCTKICGFGAIE 574


>gi|239627164|ref|ZP_04670195.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239517310|gb|EEQ57176.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 198

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
           MTY ++ + C  C    C++ C  D       F+ I   DEC  CGVC   C  DAI
Sbjct: 125 MTYHILADKCTGCGD--CIDECEEDAIQGKSRFVHIILQDECTQCGVCLSACEEDAI 179


>gi|237747777|ref|ZP_04578257.1| electron transport complex protein [Oxalobacter formigenes OXCC13]
 gi|229379139|gb|EEO29230.1| electron transport complex protein [Oxalobacter formigenes OXCC13]
          Length = 220

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           C  C  T C++ CPVD        +   I+ D C  C +C P CP+D I
Sbjct: 91  CTGC--TICIQACPVDAIVGTGKMMHTVIN-DYCTGCELCIPTCPLDCI 136



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I    C  C +C   CPVDAI
Sbjct: 85  VIDETTCTGCTICIQACPVDAI 106


>gi|225570897|ref|ZP_03779920.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM
          15053]
 gi|225160359|gb|EEG72978.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM
          15053]
          Length = 263

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E CI C    C   CP D     E    +  D C+ CG C   CPV+A
Sbjct: 7  EKCIGCG--ACKRDCPADAIKIREGKAEVFKD-CLHCGHCVAVCPVNA 51



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
           + I  ++CI CG C+ +CP DAIK
Sbjct: 1  MIQIDKEKCIGCGACKRDCPADAIK 25


>gi|224539098|ref|ZP_03679637.1| hypothetical protein BACCELL_03999 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519288|gb|EEF88393.1| hypothetical protein BACCELL_03999 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 369

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V  E C  C    C   CP     +G+    I  ++CI C  C   C   A   DT 
Sbjct: 297 VNAELCTHCGV--CAVHCPSGAILKGDECNTI-AEKCIKCCACVKGCSFKARTYDTP 350



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                ++ + C  CGVC   CP  AI    E
Sbjct: 292 PRVPEVNAELCTHCGVCAVHCPSGAILKGDE 322


>gi|168218265|ref|ZP_02643890.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
 gi|182379722|gb|EDT77201.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
          Length = 449

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|146281595|ref|YP_001171748.1| electron transport complex protein RnfB [Pseudomonas stutzeri
           A1501]
 gi|189043386|sp|A4VIV5|RNFB_PSEU5 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|145569800|gb|ABP78906.1| electron transport complex, B subunit [Pseudomonas stutzeri A1501]
 gi|327479773|gb|AEA83083.1| electron transport complex protein RnfB [Pseudomonas stutzeri DSM
           4166]
          Length = 191

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
            Y+    CI C  T C++ CPVD        +   I   EC  C +C   CPVD I
Sbjct: 107 AYIREAECIGC--TKCIQACPVDAIVGAARQMHTVII-SECTGCDLCVEPCPVDCI 159



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 18  VEVCPVDC-FYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           VE  P+D    E    +  I   ECI C  C   CPVDAI
Sbjct: 90  VEPEPLDAEGGEKPQMVAYIREAECIGCTKCIQACPVDAI 129


>gi|110799862|ref|YP_694731.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
 gi|182626814|ref|ZP_02954552.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
 gi|110674509|gb|ABG83496.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
 gi|177907860|gb|EDT70458.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
          Length = 449

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|5734562|emb|CAB52788.1| polyferredoxin [Methanothermobacter thermautotrophicus]
          Length = 447

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E+CI C    C E+CPVD        + +  D+CI C  C   CP DAI
Sbjct: 322 VSEDCISCGV--CSEICPVDAITLKRGSIEVDTDKCILCEKCGIHCPADAI 370



 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C+E+CP D   + E+ L  +  D+CI CG C   CP  A+  + E
Sbjct: 392 CIGCGL--CLEICPEDAISKDESGLMMVDEDKCIHCGACSNICPARAVLFERE 442



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T+ CILC+   C   CP D               F  I P  CI CG+C   CP DAI
Sbjct: 350 VDTDKCILCE--KCGIHCPADAIPKTTMKKRRITGGFTLIDPRLCIGCGLCLEICPEDAI 407

Query: 56  KPDT 59
             D 
Sbjct: 408 SKDE 411



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    C +VCPV    +    L I P++C  C  C  ECP  AI  D 
Sbjct: 175 CTEC--RVCEDVCPVGAIED----LEIDPEKCTLCLKCLRECPSRAIYVDD 219



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +CI C    C+E CP             +   +C  CGVCE  CPV++I+ + 
Sbjct: 32 SCITCG--ACMEACPNKAIRRNRYGGYVVDRAKCNACGVCEMTCPVNSIRIED 82



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V+T+   C LC    C   CP        +        C +C VCE  CPV AI+ 
Sbjct: 144 VITDPEKCTLC--RRCQYYCPTGAIIVDTDEGV-----CTECRVCEDVCPVGAIED 192



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+  CP +     +         CI CG C   CP  AI+
Sbjct: 14 CIRACPTEAIRMIDGRAF----SCITCGACMEACPNKAIR 49



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           C  C  T C+E CP       +  L      C+ CG C   C V
Sbjct: 267 CRDCDETPCIEACPAGTLRMVDGELR---GYCVSCGRCVRACDV 307


>gi|258406592|ref|YP_003199334.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfohalobium retbaense DSM 5692]
 gi|257798819|gb|ACV69756.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfohalobium retbaense DSM 5692]
          Length = 269

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 15  TDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             CV VCPV+   ++G + + +    CI CG C   CP   ++       E+ +  N
Sbjct: 147 GSCVRVCPVEAIDFDGSDLVWVDQAACIGCGRCVGICPTGVMRW-IPADAEVMVACN 202


>gi|254520045|ref|ZP_05132101.1| hydrogenase large subunit domain-containing protein [Clostridium
           sp. 7_2_43FAA]
 gi|226913794|gb|EEH98995.1| hydrogenase large subunit domain-containing protein [Clostridium
           sp. 7_2_43FAA]
          Length = 450

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 7   ENC-ILCKHT-----DCVEVCPVDCF-YEGENF-LAIHPDECIDCGVCEPECPVDAIKPD 58
           ++C I CK       +C   CP D   Y+G+N    I+ D C+ CG+C   C    I   
Sbjct: 79  DSCSIDCKQDANKKFNCQASCPFDAILYDGDNKSTYINYDSCVGCGLCIDACKDGKILDK 138

Query: 59  TE 60
            +
Sbjct: 139 VD 140


>gi|147676821|ref|YP_001211036.1| Fe-S-cluster [Pelotomaculum thermopropionicum SI]
 gi|146272918|dbj|BAF58667.1| Fe-S-cluster [Pelotomaculum thermopropionicum SI]
          Length = 153

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C+ C    CV+VCPV+        + + +  + C  CG C   CP   ++ D E  
Sbjct: 52  CVQCGL--CVDVCPVEALKRNGKTDAVVVDAESCTGCGTCVKVCPYGVLRIDEETD 105


>gi|78777690|ref|YP_394005.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas
          denitrificans DSM 1251]
 gi|78498230|gb|ABB44770.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas
          denitrificans DSM 1251]
          Length = 369

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 17 CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
          C  VCP +    G N L +I+   C+ CG C+  CP +A+  D 
Sbjct: 22 CEIVCPTEAIVVGGNPLPSINFSACVGCGACDSVCPNEALYLDD 65



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAI 55
           M  V    C  C    C  VCP          + +   P  CI C +C   C  +AI
Sbjct: 250 MKMVNETTCTAC--QMCYRVCPSGALSSDIKNSKIEFDPFLCIKCHICHDVCEPEAI 304


>gi|21226489|ref|NP_632411.1| heterodisulfide reductase subunit HdrA [Methanosarcina mazei Go1]
 gi|20904755|gb|AAM30083.1| heterodisulfide reductase subunit HdrA [Methanosarcina mazei Go1]
          Length = 805

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 28/89 (31%)

Query: 5   VTENCILCKHTDCVEVCPV------DCFYEG------------ENFLAIHPDECI----- 41
           V +NCI C    C  VCPV      +C Y                   I PD C+     
Sbjct: 248 VKDNCIACG--KCSRVCPVSVEDEFNCGYMDKKAISLRFSQSVPKVYFIDPDSCLRLKGE 305

Query: 42  DCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +CG C   C   AI    +  +   +++N
Sbjct: 306 NCGKCAEACKTGAIDFSQKEEI---IELN 331



 Score = 40.1 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           C  C   +C++ CP D     EN  + + P  C  CG C   C   A++
Sbjct: 619 CTRCG--ECLK-CPFDALSINENGRVVLDPLICTGCGYCTELCREGAVQ 664


>gi|219667337|ref|YP_002457772.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219537597|gb|ACL19336.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C  CK   CVE CP    ++ EN +  H   +CI C  C   CP    +   E 
Sbjct: 52  YYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCPYGVPQFIEET 111

Query: 62  GL 63
           G 
Sbjct: 112 GQ 113


>gi|299769352|ref|YP_003731378.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter sp. DR1]
 gi|298699440|gb|ADI90005.1| putative 4Fe-4S ferredoxin-type protein [Acinetobacter sp. DR1]
          Length = 87

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T +CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSDCINCD--MCLPECPNIAIFEGSKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKTD 62


>gi|283835948|ref|ZP_06355689.1| hypothetical protein CIT292_10358 [Citrobacter youngae ATCC 29220]
 gi|291068126|gb|EFE06235.1| electron transport protein HydN [Citrobacter youngae ATCC 29220]
          Length = 157

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +     C  C+   C  VCP          + +   +CI C  C   CP  A
Sbjct: 51  AFTTAVACHQCEDAPCANVCPTHAIRRERGHIFVEQAQCIGCKSCMVACPFGA 103


>gi|256842119|ref|ZP_05547624.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736435|gb|EEU49764.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 258

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TE C+ C    C ++CP       ++      D C+ C  C   CPV AI+ 
Sbjct: 193 TETCVSCG--ICAKICPTGTISLSDDRKPEWADTCVQCVACIHRCPVRAIEY 242



 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 38  DECIDCGVCEPECPVDAI--KPDTEPGL 63
           + C+ CG+C   CP   I    D +P  
Sbjct: 194 ETCVSCGICAKICPTGTISLSDDRKPEW 221


>gi|218883735|ref|YP_002428117.1| flavoprotein [Desulfurococcus kamchatkensis 1221n]
 gi|218765351|gb|ACL10750.1| archaeal flavoprotein [Desulfurococcus kamchatkensis 1221n]
          Length = 237

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           M  V+  + C +C      E CP             + P  C  C +C   CP +AI  D
Sbjct: 141 MPLVIDRDKCSMCDKCIAAENCPTGALRPDPRHKVRVSPARCTKCFICRKICPYNAIHFD 200

Query: 59  TE 60
            E
Sbjct: 201 VE 202


>gi|254485741|ref|ZP_05098946.1| cytochrome c oxidase accessory protein CcoG [Roseobacter sp.
           GAI101]
 gi|214042610|gb|EEB83248.1| cytochrome c oxidase accessory protein CcoG [Roseobacter sp.
           GAI101]
          Length = 412

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 6   TENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           T +CI C    CV VCP      +G+        ECI C +C   C     K     GL 
Sbjct: 194 TGDCIDC--MACVNVCPAGIDIRDGQQM------ECITCALCIDACDDVMAKIGKPRGLI 245

Query: 65  LWLKINSEYATQ 76
            ++ ++ E A +
Sbjct: 246 DYIALSDEAAER 257


>gi|171318600|ref|ZP_02907748.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171096198|gb|EDT41117.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|157954630|gb|ABW05547.1| formate hydrogenlyase subunit G [Thermococcus litoralis DSM 5473]
          Length = 165

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 9  CILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+ C    CV  CP D       + +G   + +    CI C  CE  CP  AI+
Sbjct: 29 CVGCG--ACVNACPPDALIKIDDYEKGTRKIVLDIGRCIRCARCEEVCPTGAIR 80



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 22 PVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-IKPDT 59
          P     E      I P  C+ CG C   CP DA IK D 
Sbjct: 11 PEQAPPEYRGIPEIDPRLCVGCGACVNACPPDALIKIDD 49


>gi|3724172|emb|CAA12251.1| ferredoxin [Thauera aromatica]
 gi|3724270|emb|CAA05141.1| ferredoxin [Thauera aromatica]
          Length = 81

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M   + ++C  C    CVE CP +    G+    I P +C +C G      C   CP D 
Sbjct: 1  MALYINDDCTACD--ACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPADC 58

Query: 55 IKPDTEPGLELWLKINSEYATQW 77
          I PD     E   ++  +Y    
Sbjct: 59 I-PDNPDYRETREELQEKYDRLH 80


>gi|51244627|ref|YP_064511.1| ferredoxin [Desulfotalea psychrophila LSv54]
 gi|50875664|emb|CAG35504.1| related to polyferredoxin [Desulfotalea psychrophila LSv54]
          Length = 291

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI     +C + CP D     ENF  +  ++C+ CGVC   CP + I+
Sbjct: 146 ACIGLG--ECADACPFDAITMVENFPVVDSNKCVSCGVCVRTCPKNIIE 192



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECP 51
           CI CK   CV+VCP D     +  + I    CI  G     +C  +CP
Sbjct: 221 CIGCK--ICVKVCPADAVSYIDGNVVIDHVACIAYGPSCEEICVAKCP 266



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE----------------GENFLAIHPDECIDCGVCE 47
           V +  C+ C    CV  CP +                    G+N  A+    CI C +C 
Sbjct: 171 VDSNKCVSCGV--CVRTCPKNIIELQTLKARVYVPCSTKDLGKNVKAVCEVGCIGCKICV 228

Query: 48  PECPVDAIKP 57
             CP DA+  
Sbjct: 229 KVCPADAVSY 238


>gi|116747695|ref|YP_844382.1| hypothetical protein Sfum_0246 [Syntrophobacter fumaroxidans MPOB]
 gi|116696759|gb|ABK15947.1| protein of unknown function DUF362 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 396

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C + CP     +  + +    D CI C  C   CP  A++        L+ +
Sbjct: 335 CKACGD--CRKYCPAGAITQAGSKIEFDYDRCIRCYCCIEVCPHGALRAVEPYPGRLFNR 392

Query: 69  I 69
           I
Sbjct: 393 I 393


>gi|186680864|ref|YP_001864060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Nostoc punctiforme PCC 73102]
 gi|186463316|gb|ACC79117.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc
          punctiforme PCC 73102]
          Length = 531

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M Y +  N C+ C   +C   CP       +N   + P  C +C G      C   CP  
Sbjct: 1  MPYTIPNNSCVGCD--NCRPQCPTGAIKIEDNEYWVDPGLCNNCEGYYSEPQCVIACPTK 58

Query: 54 AIKP 57
          +  P
Sbjct: 59 SPIP 62



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            I  + C+ C  C P+CP  AIK +     
Sbjct: 3  YTIPNNSCVGCDNCRPQCPTGAIKIEDNEYW 33


>gi|134293181|ref|YP_001116917.1| formate dehydrogenase beta subunit [Burkholderia vietnamiensis G4]
 gi|134136338|gb|ABO57452.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia vietnamiensis G4]
          Length = 304

 Score = 49.0 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|300921315|ref|ZP_07137682.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 115-1]
 gi|300411734|gb|EFJ95044.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 115-1]
          Length = 192

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +  + C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSELCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|294775010|ref|ZP_06740539.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|294451054|gb|EFG19525.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
          Length = 259

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V TE C  C   +C+EVCP        EG+    I   +CI C  C  ECP  A   DT 
Sbjct: 185 VCTEECFACG--ECIEVCPTHTIALSDEGKIETEI--TKCIKCCACVKECPNGARVFDTP 240


>gi|256810707|ref|YP_003128076.1| protein of unknown function DUF362 [Methanocaldococcus fervens
           AG86]
 gi|256793907|gb|ACV24576.1| protein of unknown function DUF362 [Methanocaldococcus fervens
           AG86]
          Length = 356

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C +VCPV+      N L I   +CI+C  C   CP +AI
Sbjct: 309 CLRC--RICEKVCPVNAI----NNLKIDRKKCINCYCCHEMCPYNAI 349



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I+  +C+ C +CE  CPV+AI
Sbjct: 304 INKSKCLRCRICEKVCPVNAI 324


>gi|238918219|ref|YP_002931733.1| nitrate reductase, beta subunit, [Edwardsiella ictaluri 93-146]
 gi|238867787|gb|ACR67498.1| nitrate reductase, beta subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 506

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y   E+ +  I+ D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVASCPSGAIYKRAEDGVVLINQDQCRGWRMCVSACPYKKIYYNWKSG 238


>gi|193213781|ref|YP_001994980.1| NADH-quinone oxidoreductase subunit I [Chloroherpeton thalassium
           ATCC 35110]
 gi|226737388|sp|B3QSE2|NUOI_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|193087258|gb|ACF12533.1| NADH-quinone oxidoreductase, chain I [Chloroherpeton thalassium
           ATCC 35110]
          Length = 183

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 13/66 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--------EGENF---LAIHPDECIDCGVCEPECPVDA 54
            E C+ C    C  VCP             E E       I+   CI CG CE  CP +A
Sbjct: 69  GERCVACGL--CSRVCPPMAISIQAEETELEQERHPATFEINMLRCIYCGYCEEVCPEEA 126

Query: 55  IKPDTE 60
           I    E
Sbjct: 127 IVMSDE 132


>gi|145298803|ref|YP_001141644.1| electron transport protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851575|gb|ABO89896.1| electron transport protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 229

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP +     +  + +    CI C  C   CP  A
Sbjct: 75  CRQCEDKPCAVACPNNAIVSEDGCVKVLQARCIGCKSCVVACPYGA 120


>gi|113868895|ref|YP_727384.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527671|emb|CAJ94016.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 721

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 15  TDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+++C  +      ++G+  + + P+ C+ CG C   CP  AI        
Sbjct: 344 TACIDICSTEAIGSRWHDGKGRIEVTPNLCMGCGACTTVCPSGAISYGYPGPE 396



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T  C +C    CV  CP     +      L+     C+ CG+CE  CP DAI
Sbjct: 585 VDTGKCTMC--MACVGACPSQALRDNPERPVLSFIERNCVQCGLCEKTCPEDAI 636



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 6/57 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTEPG 62
           + C  C    C++ CP D     +    I    C     C   C    AI  D   G
Sbjct: 218 DLCTRCN--ACIDACPEDAI---DFSYQIDLSRCRSHRACVRACGAAAAIDFDRPQG 269



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP DAI
Sbjct: 215 IDLDLCTRCNACIDACPEDAI 235



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +A+   +C  C  C   CP  A++ + E  +  +++ N
Sbjct: 583 IAVDTGKCTMCMACVGACPSQALRDNPERPVLSFIERN 620


>gi|330995175|ref|ZP_08319090.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329576514|gb|EGG58023.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 273

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV +NC  C   +CV+ CP       +   A   D C  C  C   CPV     DT 
Sbjct: 200 VVNDNCYGCG--ECVDWCPTGAITIADGRSATRADLCTKCCACVKFCPVGGRTFDTP 254


>gi|326533340|dbj|BAJ93642.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 604

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENFLA--IHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV      C   G       I  + CI CG+C  +CP DA
Sbjct: 11 VNEDRCKPKKCR-QECKKSCPVVKTGKLCIEVGPASKVSFISEELCIGCGICVKKCPFDA 69

Query: 55 IK 56
          I+
Sbjct: 70 IE 71


>gi|308050185|ref|YP_003913751.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
 gi|307632375|gb|ADN76677.1| dimethylsulfoxide reductase, chain B [Ferrimonas balearica DSM
           9799]
          Length = 213

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y  +  C  C H  CV+ CP    +       ++I    CI C  C   CP DA +
Sbjct: 65  SYYTSVGCNHCSHPVCVKACPTGACHKSRSTGLVSIDRGVCIGCASCARACPYDAPQ 121


>gi|302391759|ref|YP_003827579.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203836|gb|ADL12514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 252

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 12/60 (20%)

Query: 17  CVEVCPVDCFYEGENF------------LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CV  C  +      NF             +I  D CI CG C   CP  AI+ D E    
Sbjct: 129 CVRACKEEVGIGAINFVGRGYETEVDTPFSIDSDVCIGCGACAEVCPTGAIEVDDEGSTR 188


>gi|256828088|ref|YP_003156816.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577264|gb|ACU88400.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 264

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  CV VCP    ++ E+ +  +    CI C  C   CP  +   + +       
Sbjct: 127 CNHCDNPPCVRVCPTKATFQREDGIVMMDFHRCIGCRYCMAGCPYGSRSFNFKDPRPFIE 186

Query: 68  KINSEYATQWPNITTKKE 85
           K++ +Y T+   +  K E
Sbjct: 187 KVDLDYPTRTKGVVEKCE 204


>gi|224373537|ref|YP_002607909.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Nautilia
           profundicola AmH]
 gi|223588424|gb|ACM92160.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Nautilia
           profundicola AmH]
          Length = 222

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C+   C+ VCP    +  E  +  +  D CI C  C   CP +A   D 
Sbjct: 61  CNHCEDAPCITVCPTGASHFVEGGIVKVDYDMCIICKGCMEACPYEARFVDE 112


>gi|15678797|ref|NP_275914.1| hypothetical protein MTH772 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621863|gb|AAB85275.1| conserved protein (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 375

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C    CVE CPV+    G          CI+C  C   CP  A   D
Sbjct: 310 ERCRNCNV--CVESCPVEALKAGAVIPEFDYSRCINCLCCMEVCPHAAFYQD 359



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I P+ C +C VC   CPV+A+K
Sbjct: 307 IDPERCRNCNVCVESCPVEALK 328


>gi|45359187|ref|NP_988744.1| polyferredoxin [Methanococcus maripaludis S2]
 gi|45048062|emb|CAF31180.1| polyferredoxin [Methanococcus maripaludis S2]
          Length = 481

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+LC+   C++ CP D     E   F +I  +ECI CG C   CP DAI
Sbjct: 321 CVLCEL--CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAI 367



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 7  ENCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C  CK+ +   C+EVCP +     +         CI CG C  ECP  AIK
Sbjct: 13 EECEDCKNKEISKCMEVCPTNAIKMIDGKAF----SCITCGTCAKECPTGAIK 61



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--------CIDCGVCEPECPVDAIK 56
           VTENCILC   +C+  CP D     E  +    ++        CI+CG+C  +CP +A++
Sbjct: 225 VTENCILCG--NCISKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALR 282

Query: 57  PD 58
            +
Sbjct: 283 FE 284



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAI 55
          +CI C    C + CP     + E     ++   C  CG+C+  CP+D I
Sbjct: 44 SCITCG--TCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDII 90



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 2   TYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y+ T+N  C+ C    C  +CP D   +GE    I+ ++C  C  C   CP  AI+
Sbjct: 421 SYIRTDNDYCVKCGL--CTIICPNDAIDKGE----INTEKCEYCSACVNICPTRAIR 471



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C+ C    C+ +CP D   E E       D C  C +C   CPVDAI+ 
Sbjct: 181 CVECG--KCIYLCPKDTIIEAEMV-----DGCTRCNICNEVCPVDAIEY 222



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV+ CP +        +   P  C  C  C  ECP
Sbjct: 266 CINCGL--CVDKCPSNALRFENGKILYDPKTCTLCNTCVKECP 306



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDA 54
           YV  + C  C    C  VCP+D     E+    +     C+ CG+C  ECP +A
Sbjct: 69  YVNRKLCTGCG--ICKNVCPIDIIDIREDSTGKSYPTGMCVMCGLCTTECPYNA 120



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    C EVCPVD    G+       + CI CG C  +CP D ++
Sbjct: 203 DGCTRCN--ICNEVCPVDAIEYGQVT-----ENCILCGNCISKCPKDVLE 245


>gi|116754476|ref|YP_843594.1| thiamine pyrophosphate binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665927|gb|ABK14954.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Methanosaeta thermophila PT]
          Length = 594

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 3   YVVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y VT+ C+ C    C+E  CP     E +   +I+   C  CGVC   CP  AI+
Sbjct: 543 YRVTDECVGC--RQCLEFDCPA---IEFDEKASIN-QLCTGCGVCAQICPKGAIE 591


>gi|330820876|ref|YP_004349738.1| Fe-S-cluster-containing hydrogenase components 1 [Burkholderia
           gladioli BSR3]
 gi|327372871|gb|AEA64226.1| Fe-S-cluster-containing hydrogenase components 1 [Burkholderia
           gladioli BSR3]
          Length = 304

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|313682219|ref|YP_004059957.1| hypothetical protein Sulku_1094 [Sulfuricurvum kujiense DSM
          16994]
 gi|313155079|gb|ADR33757.1| hypothetical protein Sulku_1094 [Sulfuricurvum kujiense DSM
          16994]
          Length = 129

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCG-----VCEP 48
          M  ++T++CI C    C+E CP            E   +  + P++CI+C       C  
Sbjct: 1  MAVLITDSCINCD--ACIEECPATAIVSADESPLENGEYTYVKPEKCIECVDAAVPKCAD 58

Query: 49 ECPVD-AIKPDTE 60
           CP +  I  D  
Sbjct: 59 VCPTEDCIVWDMP 71



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             +  D CI+C  C  ECP  AI    E  LE
Sbjct: 1  MAVLITDSCINCDACIEECPATAIVSADESPLE 33


>gi|309776546|ref|ZP_07671526.1| nitroreductase family protein fused to ferredoxin domain protein
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915647|gb|EFP61407.1| nitroreductase family protein fused to ferredoxin domain protein
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 257

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI----KPDTEPGL 63
           CI C    CV  CP       +   ++  D CI C  C   CP  A+     P+     
Sbjct: 12 ACIGCGL--CVTDCPASNIVLQDKKASVIEDTCIMCSHCVAICPKHAVSITGFPEESVEK 69

Query: 64 ELWLKIN 70
             L+++
Sbjct: 70 STMLRLD 76



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTE 60
          ++I    CI CG+C  +CP   I    +
Sbjct: 6  ISIDSKACIGCGLCVTDCPASNIVLQDK 33


>gi|256371188|ref|YP_003109012.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007772|gb|ACU53339.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 229

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 27/126 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C+   C   CP  C Y              GE F     I+   CI C +C   C
Sbjct: 53  EKCIGCEL--CAGACPARCIYVRGANNDPERPTSPGERFGFVYEINYLRCIHCDLCVEAC 110

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPN-ITTKKESLPSAAKMDGVKQKYEKYFSP--- 106
           P +AI   TE  +  +   N E A      +    E  P     +  + + E++ S    
Sbjct: 111 PTEAI---TESKMFEFAFTNREDAIYTKAELVVDDEGHPRRQPWEDWRDEDERWTSAWVR 167

Query: 107 --NPGG 110
              PGG
Sbjct: 168 ATAPGG 173


>gi|238024282|ref|YP_002908514.1| Fe-S-cluster-containing hydrogenase components 1 [Burkholderia
           glumae BGR1]
 gi|237878947|gb|ACR31279.1| Fe-S-cluster-containing hydrogenase components 1 [Burkholderia
           glumae BGR1]
          Length = 304

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|237751588|ref|ZP_04582068.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879]
 gi|229372954|gb|EEO23345.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879]
          Length = 206

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
           +E CI C    C ++C  +C     +EGE+         I+   CI CG+C   CP  AI
Sbjct: 91  SERCIGCGL--CEKICTSNCIRILTHEGEDGRKKIDSYTINLGRCIYCGLCAEVCPELAI 148



 Score = 34.0 bits (77), Expect = 7.5,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + CI CG+CE  C  + I+  T  G +   KI+
Sbjct: 92  ERCIGCGLCEKICTSNCIRILTHEGEDGRKKID 124


>gi|289580158|ref|YP_003478624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
 gi|289529711|gb|ADD04062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
          Length = 498

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAI-HPDECIDCGVCEPECPVD 53
            C  C    C +VCP    +  EN  L +   D CI C  C+  CP  
Sbjct: 245 PCQHCTDAPCEKVCPTTARHTRENGGLVLTDYDVCIGCRYCQVACPYG 292


>gi|221123577|ref|XP_002153953.1| PREDICTED: similar to ATP-binding cassette, sub-family E, member
          1 [Hydra magnipapillata]
          Length = 605

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C   CPV      C           I    CI CG+C  +CP +A
Sbjct: 16 VNSDRCKPKKCR-QECKRSCPVVRQGKLCIEVVPTSKLAYISEQLCIGCGICVKKCPFEA 74

Query: 55 I 55
          I
Sbjct: 75 I 75


>gi|160878703|ref|YP_001557671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160427369|gb|ABX40932.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           phytofermentans ISDg]
          Length = 697

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 8   NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPEC 50
            C  C    C EVCP          EG  +  ++ ++CI CG+CE  C
Sbjct: 317 ECCGC--YACKEVCPTGAIQMLMDREGFYYPHVNKEKCIHCGLCERVC 362



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           PV+C  +          EC  C  C+  CP  AI+   +     +  +N E
Sbjct: 306 PVNCPTKITRG------ECCGCYACKEVCPTGAIQMLMDREGFYYPHVNKE 350


>gi|46200214|ref|YP_005881.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27]
 gi|55980061|ref|YP_143358.1| NADH-quinone oxidoreductase subunit 9 [Thermus thermophilus HB8]
 gi|2499326|sp|Q56224|NQO9_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|81405222|sp|Q72GD6|NUOI_THET2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|90109660|pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109668|pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109676|pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109684|pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588594|pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588602|pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588610|pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588618|pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588626|pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588634|pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588642|pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588650|pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863610|pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863623|pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279869|gb|AAA97946.1| NADH dehydrogenase I, subunit NQO9 [Thermus thermophilus]
 gi|46197842|gb|AAS82254.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27]
 gi|55771474|dbj|BAD69915.1| NADH-quinone oxidoreductase chain 9 [Thermus thermophilus HB8]
          Length = 182

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 51  EKCIGC--SLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELW 66
           P  AI    +  +  +
Sbjct: 109 PTGAIVLGYDFEMADY 124


>gi|319789973|ref|YP_004151606.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1]
 gi|317114475|gb|ADU96965.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1]
          Length = 505

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
          E C+ CK   CV+ C  +  Y  E+   I  H + C++C  CE  CP DAIK
Sbjct: 20 EKCVRCK--SCVDQCSFNATYYDEDLNRIMNHHENCVNCKRCEAFCPTDAIK 69



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE 39
          ENC+ CK   C   CP D      N    HPD 
Sbjct: 51 ENCVNCK--RCEAFCPTDAIKVVPNPSTFHPDA 81


>gi|308048640|ref|YP_003912206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307630830|gb|ADN75132.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 214

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +V + C  C    C+ VCP       E      +    C+ CG C   CP   I  D
Sbjct: 111 IVPQTCRQCDV--CMTVCPQQAISVNETTGARVVDESLCVGCGYCADHCPQQVITID 165


>gi|268678911|ref|YP_003303342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268616942|gb|ACZ11307.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 188

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C++C++  CV VCP    F + +  + I    CI C  C   CP  A
Sbjct: 58  ACVMCENPPCVSVCPTFASFQDAQGLVHIDERVCITCKYCILACPYHA 105


>gi|223558014|gb|ACM91020.1| C-terminal:putative Fe-S cluster [uncultured bacterium URE4]
          Length = 428

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 18 VEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          +  CP            I  ++C+DCG C   CP  AI 
Sbjct: 1  MRSCPTGAIRIRNGKAVITDNKCVDCGECMQVCPHKAIY 39


>gi|222054741|ref|YP_002537103.1| Formate dehydrogenase transmembrane domain protein [Geobacter sp.
           FRC-32]
 gi|221564030|gb|ACM20002.1| Formate dehydrogenase transmembrane domain protein [Geobacter sp.
           FRC-32]
          Length = 258

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C+ C    C++VCP     Y   + +   + ++CI C  C   CP +  +   +  L 
Sbjct: 73  ERCMHCGDAGCLKVCPSPGALYRTRDGIIAYNKEKCISCKYCVSACPFNIPRYGADDKLA 132

Query: 65  L 65
            
Sbjct: 133 K 133


>gi|254458384|ref|ZP_05071809.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207084692|gb|EDZ61979.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 565

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V   NC LC    CV  C VD       +N L I+P  C  CG CE  CP    + D   
Sbjct: 424 VNEANCTLCL--ACVGACNVDALVANIDDNSLRINPSICTACGFCEVVCP----EKDCLT 477

Query: 62  GLELWLKINSEYATQ 76
             E  +K+N  +  +
Sbjct: 478 IEEDVIKLNPTWFKE 492



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 17  CVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C  VCP       ++   L     +C  CG C   CP  A+        E    I+  ++
Sbjct: 218 CAVVCPTVAIERDDDIKHLLFSQIDCHGCGGCISVCPSGALDY-APLNRESIYDISRIFS 276

Query: 75  TQWP-NITTK 83
              P  I  K
Sbjct: 277 GHIPLVIPQK 286



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 43  CGVCEPECPVDAIKPDTEPGLELWLKIN 70
           CG C   CP  AI+ D +    L+ +I+
Sbjct: 215 CGKCAVVCPTVAIERDDDIKHLLFSQID 242


>gi|168215159|ref|ZP_02640784.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|170713430|gb|EDT25612.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
          Length = 449

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|168211819|ref|ZP_02637444.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
 gi|170710224|gb|EDT22406.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
          Length = 449

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPEC 50
           V T+NC       C  +CP D        N   I P+ C +CG+C   C
Sbjct: 82  VCTKNCSKESKGKCQSLCPFDAILTDPIDNSKYIDPNLCQNCGICVQVC 130


>gi|222054369|ref|YP_002536731.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32]
 gi|221563658|gb|ACM19630.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32]
          Length = 176

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EG N         I+   CI CG+C   CP  AI
Sbjct: 54  GERCVACYL--CSAACPVDCISMQSVEGPNGRRYAEWFRINFARCIYCGLCAEACPTLAI 111

Query: 56  KPDTE 60
           +  T+
Sbjct: 112 QMTTD 116


>gi|83595878|gb|ABC25240.1| ferredoxin [uncultured marine bacterium Ant4D3]
          Length = 82

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++CI C    C   CP +    GE    I  ++C +C        C   CPVD 
Sbjct: 1  MSLIITDDCINCDV--CEPECPNEAISPGEEIYEIDMNKCTECVGHYDEPQCVEVCPVDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPLDPD 64


>gi|89896832|ref|YP_520319.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89336280|dbj|BAE85875.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 192

 Score = 48.6 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEP 61
           Y ++  C  CK   CVE CP    ++ EN +  H   +CI C  C   CP    +   E 
Sbjct: 52  YYLSITCNHCKEPKCVEGCPTQAMHKLENGIVAHDKSKCIGCRYCTWSCPYGVPQFIEET 111

Query: 62  GL 63
           G 
Sbjct: 112 GQ 113


>gi|325290633|ref|YP_004266814.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966034|gb|ADY56813.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 289

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + E C LC    C + C      + E  L +   +C +CG C   CP DA
Sbjct: 164 IKEACTLCGV--CAKACRDGAITQTETELLLDESKCNNCGRCVKSCPFDA 211


>gi|310658148|ref|YP_003935869.1| periplasmic [fe] hydrogenase large subunit [Clostridium
          sticklandii DSM 519]
 gi|308824926|emb|CBH20964.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
          [Clostridium sticklandii]
          Length = 456

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  ++ +  C  CK   C +VCPVD    +     +I  ++C+ CG C   C   A   D
Sbjct: 1  MAVLIDQELCTGCK--MCSDVCPVDAISGDAGKPQSIDENKCVLCGQCVQMCSSFASVFD 58

Query: 59 TE 60
           E
Sbjct: 59 EE 60



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          I  + C  C +C   CPVDAI  D     
Sbjct: 5  IDQELCTGCKMCSDVCPVDAISGDAGKPQ 33


>gi|257052556|ref|YP_003130389.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Halorhabdus utahensis DSM 12940]
 gi|256691319|gb|ACV11656.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Halorhabdus utahensis DSM 12940]
          Length = 97

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 6  TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C   CP       EGE+F A   D C  CG+CE  CPVDAI
Sbjct: 41 AETCIACGQ--CDTFCPDQAAKPVEGEDFYAFDLDYCKGCGICEEVCPVDAI 90


>gi|226355367|ref|YP_002785107.1| NADH dehydrogenase (quinone) subunit I [Deinococcus deserti VCD115]
 gi|259514770|sp|C1D0H9|NUOI_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226317357|gb|ACO45353.1| putative NADH dehydrogenase (quinone), subunit I (NADH-quinone
           oxidoreductase, subunit I) [Deinococcus deserti VCD115]
          Length = 179

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 52  EKCIGC--SLCAAACPAYAIYVEAGENDPHDPVSPGERYAKVYEINMLRCIFCGMCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  +  +
Sbjct: 110 PTGAVVLGNEFEMADY 125


>gi|218295768|ref|ZP_03496564.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23]
 gi|218243927|gb|EED10454.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23]
          Length = 182

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 51  EKCIGC--SLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELW 66
           P  AI    +  +  +
Sbjct: 109 PTGAIVLGYDFEMADY 124


>gi|167585980|ref|ZP_02378368.1| NADH dehydrogenase subunit I [Burkholderia ubonensis Bu]
          Length = 162

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPAMAITIESE 83


>gi|160884522|ref|ZP_02065525.1| hypothetical protein BACOVA_02507 [Bacteroides ovatus ATCC 8483]
 gi|156110261|gb|EDO12006.1| hypothetical protein BACOVA_02507 [Bacteroides ovatus ATCC 8483]
          Length = 442

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 345 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 404

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 405 CPARPFRAIYIEGNPVQKE 423



 Score = 33.6 bits (76), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 20/63 (31%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                  ++    + CI       CG C   CP 
Sbjct: 319 DCTVCGD-----VCPNGAILPINVEQKHLTQMGYVVFIEENCIVYTDGTSCGACSEHCPT 373

Query: 53  DAI 55
            A+
Sbjct: 374 QAV 376


>gi|197116572|ref|YP_002136999.1| NADH dehydrogenase subunit I [Geobacter bemidjiensis Bem]
 gi|197085932|gb|ACH37203.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem]
          Length = 176

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGEN         I+   CI CG+C   CP  AI
Sbjct: 54  AERCVACYL--CSGACPVDCISMAAAEGENGRRYAAWFRINFSRCILCGMCAEACPTLAI 111

Query: 56  KPDTE 60
           +   E
Sbjct: 112 QMSPE 116


>gi|71908216|ref|YP_285803.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71847837|gb|AAZ47333.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 231

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   CV  CPV+     E   F+    + CI C  C   CP +A
Sbjct: 70  CNHCEDPPCVRNCPVEATFVVEDGGFVLQRYERCIGCRSCMAACPYNA 117


>gi|33592565|ref|NP_880209.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama
           I]
 gi|33572211|emb|CAE41759.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama
           I]
 gi|332381983|gb|AEE66830.1| putative iron-sulfur binding protein [Bordetella pertussis CS]
          Length = 696

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V ++ C LC    CV  CP +   +      L +    C+ CG+C   CP +AI
Sbjct: 562 VDSDACTLC--MSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAI 613



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           + C    C+++C         +   + ++P  C+ CG C   CP  A
Sbjct: 314 VGC--RACIDICSARAISSDSHHQRIVVNPSLCVGCGACTTVCPSGA 358



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D C  C  C   CP  AI  D +  
Sbjct: 191 IDLDLCTRCNACISACPDGAIGLDYQVD 218



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPG 62
           + C  C    C+  CP            +    C     CE  C V  AI     P 
Sbjct: 194 DLCTRCN--ACISACPDGAIGLD---YQVDTARCTSHRACEQACTVAGAIDFSRSPE 245



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +A+  D C  C  C   CP +A+  + +      ++ N
Sbjct: 560 VAVDSDACTLCMSCVSACPSNALLDNPQSPQLRMVEKN 597


>gi|332704390|ref|ZP_08424478.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554539|gb|EGJ51583.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 706

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           CI      CV+VC  D     ++ L I   + C  CG C   CP  AI+
Sbjct: 137 CIGMG--SCVKVCGFDAIRLNDDNLPIVDMNSCRSCGKCVEVCPTGAIR 183


>gi|325524298|gb|EGD02410.1| NADH dehydrogenase subunit I [Burkholderia sp. TJI49]
          Length = 162

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPAMAITIESE 83


>gi|307822558|ref|ZP_07652789.1| nitrate reductase, beta subunit [Methylobacter tundripaludum SV96]
 gi|307736162|gb|EFO07008.1| nitrate reductase, beta subunit [Methylobacter tundripaludum SV96]
          Length = 544

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + E G
Sbjct: 207 CEHCLNPTCVAACPSGSIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWETG 262


>gi|269217236|ref|ZP_06161090.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269129373|gb|EEZ60458.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 205

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVD 53
           Y V+  C  C    CV+ CP     + E    ++ D+  CI C  CE  CP +
Sbjct: 61  YYVSMTCGQCADPQCVKNCPTGAMAKDEETGIVNNDKEICIGCMTCEQVCPYN 113


>gi|219853264|ref|YP_002467696.1| glutamate synthase (NADPH) [Methanosphaerula palustris E1-9c]
 gi|219547523|gb|ACL17973.1| Glutamate synthase (NADPH) [Methanosphaerula palustris E1-9c]
          Length = 502

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
          ++ C+LC    CV+ C    F + E  +AI +P  C  C  C   CP DAI    +P
Sbjct: 15 SDQCMLCG--RCVDNCSYGVFQKEEERIAIVNPRNCTACHRCIAMCPRDAISLKEKP 69


>gi|126698736|ref|YP_001087633.1| electron transport complex protein [Clostridium difficile 630]
 gi|115250173|emb|CAJ67994.1| Electron transport complex protein [Clostridium difficile]
          Length = 325

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  CI C    CV+ C  D     +    I P++C+ C  C  +CP   I  D
Sbjct: 213 TAGCIGCG--MCVKACKFDAIIFEDKIAKIDPNKCVGCMQCVAKCPTKVISGD 263



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C + C  D     +    I  ++C++CG C+  CP   I        E+ ++ NS+  
Sbjct: 148 CKDACKFDAISIVDGIAVIDEEKCVNCGKCKEVCPKG-IIITKPESQEVVVECNSKEF 204



 Score = 40.9 bits (95), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C  T C + C  D    E +    +  D+C+ C +C  +CP  AIK
Sbjct: 275 ELCVGC--TVCKKQCKFDAIEGELKEKHKVDADKCVGCHLCMEKCPKKAIK 323



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    CV  CP          +  + I  + C+ C VC+ +C  DAI+ + +   +
Sbjct: 245 CVGC--MQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK 301



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI----HPDE------------CIDCGVCEPEC 50
           E C+ C    C EVCP            +    +  E            CI CG+C   C
Sbjct: 169 EKCVNCG--KCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 226

Query: 51  PVDAIKPDTE 60
             DAI  + +
Sbjct: 227 KFDAIIFEDK 236


>gi|83310779|ref|YP_421043.1| NADH dependent phenylglyoxylate [Magnetospirillum magneticum AMB-1]
 gi|82945620|dbj|BAE50484.1| NADH dependant phenylglyoxylate [Magnetospirillum magneticum AMB-1]
          Length = 469

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCF-YEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           T  C  C    CV+VCP      +G N +      +C+DC +C   C    I  D 
Sbjct: 48  TALCRQCGDPKCVQVCPSGALDKDGGNGIIGWDASKCVDCLLCTAGCAYGGIAVDE 103


>gi|15668693|ref|NP_247492.1| polyferredoxin [Methanocaldococcus jannaschii DSM 2661]
 gi|48474321|sp|P81293|Y51B_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514.2
 gi|2826291|gb|AAB98509.1| polyferredoxin [Methanocaldococcus jannaschii DSM 2661]
          Length = 408

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLEL 65
           E C+ C   +C   CP++     E    I+   CI C  C   CP++ AI    E  L+ 
Sbjct: 129 EVCVRCG--NCERACPINVIERKEGKYVINMALCISCKECIKVCPIENAIVVVDEKTLKE 186

Query: 66  WLKINSEYATQWPNITTKKE 85
             KI+  +  +   IT K E
Sbjct: 187 --KIDKAFEIKNKKITGKLE 204



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+ E+ CI C    C +VC        +      I P+ C+  G C  ECPV AIK   
Sbjct: 275 YVIDEDLCIGC--RICQKVCGSGAIKISKETKLPYIVPELCVRGGACARECPVGAIKVVK 332

Query: 60  EPGLEL 65
               E 
Sbjct: 333 PEEAEE 338



 Score = 43.6 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 18/69 (26%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGVCE 47
           V+ E +C+ C   +C+EVCP       ++                L I  + C+ CG CE
Sbjct: 81  VIDEGSCVAC--ANCIEVCPTGVLEMDKHRVETEGLFFDKPKYSNLIIDEEVCVRCGNCE 138

Query: 48  PECPVDAIK 56
             CP++ I+
Sbjct: 139 RACPINVIE 147



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C+ C    C+EVC                +    I  D CI C +C+  C   AIK
Sbjct: 244 ECVKCGL--CIEVCSTTAIRIYKPIIPKRKDICYVIDEDLCIGCRICQKVCGSGAIK 298



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C+   C E CP             +    I    C+ C  C   CP   ++ D
Sbjct: 50  EKCISCEG--CKESCPAFAIEMIYNEEYNKKLPVIDEGSCVACANCIEVCPTGVLEMD 105


>gi|332799542|ref|YP_004461041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
 gi|332697277|gb|AEE91734.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
          Length = 170

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 8  NCILCKHT----DCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C        C E CP      G+   N   +  D+CI CG C   CP  AI 
Sbjct: 36 ACIECVQEIPCNPCEEACPYGAITVGKPITNLPTLDEDKCIGCGTCIAACPGLAIF 91


>gi|321256389|ref|XP_003193382.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
 gi|317459852|gb|ADV21595.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Cryptococcus gattii WM276]
          Length = 280

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 20/67 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA-----------IHPDECIDCGVCEP 48
           E CI CK   C  +CP            +G                I   +CI CG C+ 
Sbjct: 134 ERCIACKL--CEAICPAQAITIESEAREDGSRRTTRYGCMLTLQKDIDMTKCIYCGFCQE 191

Query: 49  ECPVDAI 55
            CPVDAI
Sbjct: 192 ACPVDAI 198



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22  PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
           P+   + GE+ L  +P   + CI C +CE  CP  AI  ++E   +
Sbjct: 115 PLSARFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESEARED 160


>gi|301060161|ref|ZP_07201028.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445673|gb|EFK09571.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 273

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI CK   C EVCP+      +  ++     CI C  C  +CPV A   D E  L    
Sbjct: 201 DCIDCKL--CSEVCPMGSIDLDD--VSKITGICIKCCACVKKCPVGAKYFDDENYLWHKH 256

Query: 68  KINSEY 73
           ++   +
Sbjct: 257 ELEVAF 262


>gi|317154953|ref|YP_004123001.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316945204|gb|ADU64255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 144

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCGVCEPECPVDAIKPD 58
           C+ C    C   CP     +  +   I   + CI CG C   CPVDAI  D
Sbjct: 54  CLACNPAPCAGACPTGSLTQRRDGGVIQKKNLCIRCGQCAKACPVDAIFLD 104



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    C + CPVD  +   + +  +P  CI CG C   CP D ++ +  P  + 
Sbjct: 86  CIRCGQ--CAKACPVDAIFL--DHMV-NPYVCIHCGRCVEFCPHDCLEMEDLPRADK 137


>gi|194334931|ref|YP_002016791.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194312749|gb|ACF47144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 188

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C++  CV  CP    +  E+    ++   C  C  C   CP DA
Sbjct: 58  SERCQHCENAPCVTYCPTGASHYAEDGTVQVNRSRCTGCKACLAACPYDA 107


>gi|183231849|ref|XP_654696.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802305|gb|EAL49308.2| hypothetical protein EHI_194430 [Entamoeba histolytica HM-1:IMSS]
          Length = 189

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAI 55
          CI C    C+ VCP            +  P+ CI CG C   CPV AI
Sbjct: 12 CIGCLQ--CIRVCPTKVLTSTHMKSTLSFPERCISCGCCASVCPVGAI 57


>gi|251799429|ref|YP_003014160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. JDR-2]
 gi|247547055|gb|ACT04074.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Paenibacillus sp. JDR-2]
          Length = 110

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDAIKP 57
          M  VV+E+ C+ C    CV VCP + F  G++ + +    D+C  C +CE  CPVDA+  
Sbjct: 1  MIEVVSESRCVSCNQ--CVSVCPTNVFDRGDDGIPVIARQDDCQTCFMCELYCPVDALY- 57

Query: 58 DTEPGLELWLKINSEYATQ 76
             P  E  + I+ E A Q
Sbjct: 58 -VAPDSEQVIGISEEEAEQ 75


>gi|116329922|ref|YP_799640.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122282305|sp|Q04W38|NUOI_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116123611|gb|ABJ74882.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 175

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 19/74 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFL----AIHPDE------------CIDCGVCEPE 49
           E C  C    C+ +CP D  Y E    +     +HP++            CI CG+CE  
Sbjct: 76  ERCTSC--FCCMWICPADAIYIEAGEVVPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEA 133

Query: 50  CPVDAIKPDTEPGL 63
           CP  AI  D    +
Sbjct: 134 CPKGAIYLDGPGEM 147


>gi|298291838|ref|YP_003693777.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506]
 gi|296928349|gb|ADH89158.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506]
          Length = 162

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123


>gi|227822745|ref|YP_002826717.1| NADH-quinone oxidoreductase subunit I2 [Sinorhizobium fredii
           NGR234]
 gi|227341746|gb|ACP25964.1| NADH-quinone oxidoreductase subunit I2 [Sinorhizobium fredii
           NGR234]
          Length = 188

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP  C                   I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCYCIEVVPYEDEKGNRRPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|254519305|ref|ZP_05131361.1| electron transport complex protein [Clostridium sp. 7_2_43FAA]
 gi|226913054|gb|EEH98255.1| electron transport complex protein [Clostridium sp. 7_2_43FAA]
          Length = 308

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 12/56 (21%)

Query: 8   NCILCKHTDCVEVCP--------VDCFYEGENFLAIH--PDECIDCGVCEPECPVD 53
           +CI C    C+ VCP        V+ +  GE    I    ++CIDCG+C   CP +
Sbjct: 241 SCIRCG--KCLRVCPEGLNPIKLVELYKMGEKEEFIKFGGEKCIDCGLCSFACPSN 294


>gi|196231247|ref|ZP_03130106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196224583|gb|EDY19094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 189

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
            V + C+ C+   C +VCP D   + E  + +  +   C+ C  C   CP    K
Sbjct: 54  TVMQICMHCEDPACAKVCPADAIVKDEFGVVMSANTSRCVGCSNCVLACPFGVPK 108


>gi|114798298|ref|YP_760457.1| NADH dehydrogenase subunit I [Hyphomonas neptunium ATCC 15444]
 gi|123128794|sp|Q0C1D6|NUOI_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114738472|gb|ABI76597.1| NADH-quinone oxidoreductase, I subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 161

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 20/100 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI 
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAEPREDGARRTTRYDIDMVKCIYCGFCQEACPVDAIV 117

Query: 56  -----KPDTEPGLELWLKINSEYA--TQWPNITTKKESLP 88
                +  TE   EL+       A   +W  +  K   L 
Sbjct: 118 EGPNFEFATETREELFYDKERLLANGDRWERLIAKNLELD 157


>gi|15668270|ref|NP_247063.1| ferredoxin II [Methanocaldococcus jannaschii DSM 2661]
 gi|2494419|sp|Q57563|FER2_METJA RecName: Full=Uncharacterized ferredoxin MJ0099
 gi|1590877|gb|AAB98079.1| ferredoxin II [Methanocaldococcus jannaschii DSM 2661]
          Length = 131

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C+  CP++  Y  E++ +    ++C+ C  C   CP  AI+
Sbjct: 80  EKCVHCG--CCITQCPINVIYMDEDYNVVFKEEDCVGCKNCLKACPFKAIE 128


>gi|304315502|ref|YP_003850649.1| CoB-CoM heterodisulfide reductase iron-sulfur, subunit A
           [Methanothermobacter marburgensis str. Marburg]
 gi|41017088|sp|Q50756|HDRA_METTM RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
 gi|728612|emb|CAA57039.1| heterodisulfide reductase [Methanothermobacter thermautotrophicus]
 gi|302588961|gb|ADL59336.1| CoB-CoM heterodisulfide reductase iron-sulfur, subunit A
           [Methanothermobacter marburgensis str. Marburg]
          Length = 659

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENFL---------------AIHPDECIDCG 44
           Y+  E C  C    CVEVCP++    F EG                    I  D CI+C 
Sbjct: 248 YIDEELCTGCG--SCVEVCPIEMPNYFDEGIGMTKAVYIPFPQAVPLCATIDKDYCIECM 305

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C+  C   A+K D EP  
Sbjct: 306 LCDEVCERGAVKHDQEPEE 324



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++ C  C+   C+E+CP       E    ++   C  CG C   CP  A+        ++
Sbjct: 588 SDVCGGCEV--CIELCPFGAISIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFKTEQI 645

Query: 66  WLKINSEY 73
             +I +  
Sbjct: 646 MAQIEAAL 653


>gi|315924362|ref|ZP_07920584.1| isoquinoline 1-oxidoreductase, alpha subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622241|gb|EFV02200.1| isoquinoline 1-oxidoreductase, alpha subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 591

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ + CI CK   C+   CP   F   E+      + C+ CGVC   CPVDAI
Sbjct: 537 VLMDKCIGCKQ--CIGTGCPALEFGRIEDQKMTITNACVGCGVCGQVCPVDAI 587


>gi|319761695|ref|YP_004125632.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicycliphilus denitrificans BC]
 gi|330823566|ref|YP_004386869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Alicycliphilus denitrificans K601]
 gi|317116256|gb|ADU98744.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicycliphilus denitrificans BC]
 gi|329308938|gb|AEB83353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Alicycliphilus denitrificans K601]
          Length = 85

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNQAISMGEEHYEIEPSKCTECVGHFDEPQCVAICPVAC 58

Query: 55 I------KPDTEPGLELWLKINSEYAT 75
          I      K D E   + + ++ +  + 
Sbjct: 59 IPVDPAHKEDRETLWQKFERLRAAQSA 85


>gi|261211645|ref|ZP_05925932.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341]
 gi|260838995|gb|EEX65627.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341]
          Length = 504

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG       + I+P  C   G C   CP +AI
Sbjct: 124 TDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAI 183

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 184 HYALPNPTDTQKFIE 198



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 368 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACP 413



 Score = 34.0 bits (77), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 117 PKYFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQIN 164


>gi|260174845|ref|ZP_05761257.1| ferredoxin-type protein [Bacteroides sp. D2]
          Length = 442

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 345 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 404

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 405 CPARPFRAIYIEGNPVQKE 423


>gi|257453944|ref|ZP_05619220.1| ferredoxin [Enhydrobacter aerosaccus SK60]
 gi|257448609|gb|EEV23576.1| ferredoxin [Enhydrobacter aerosaccus SK60]
          Length = 87

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC--GVCEPECPVDAIKPD 58
          M  ++T+ CI C    C  +CP D  Y GE    I P  C +C     EP+C +    PD
Sbjct: 1  MALIITDECINCDV--CEPLCPNDAIYVGELIYEIDPALCTECVGHFDEPQCSLFCPVPD 58

Query: 59 TEPGLELWLKINSEYATQWPNITTKK 84
            P    +L+  ++   ++  IT  K
Sbjct: 59 CIPKDPNYLETPAQLLLKFERITQTK 84


>gi|295401612|ref|ZP_06811580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110873|ref|YP_003989189.1| Fe-S-cluster-containing hydrogenase components 1 [Geobacillus sp.
           Y4.1MC1]
 gi|294976379|gb|EFG51989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215974|gb|ADP74578.1| Fe-S-cluster-containing hydrogenase components 1 [Geobacillus sp.
           Y4.1MC1]
          Length = 162

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C+   CV VCP    F   EN    +  +CI C +C   CP  AI
Sbjct: 61  CRQCEDAPCVAVCPTGAMFKLDENTNVCNLQQCIGCWMCALSCPFGAI 108


>gi|251780214|ref|ZP_04823134.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084529|gb|EES50419.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 258

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + CI C    C   CPV+     +    I    CI C  CE  CP  AI
Sbjct: 9  VNKDLCIGCGL--CKNDCPVNNITIIDKKSNIKNQNCIKCCHCEAICPTKAI 58



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 33 LAIHPDECIDCGVCEPECPVDAI 55
          + ++ D CI CG+C+ +CPV+ I
Sbjct: 7  IEVNKDLCIGCGLCKNDCPVNNI 29


>gi|227825030|ref|ZP_03989862.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905529|gb|EEH91447.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 375

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV E+ C  CK   C + C  D     +    I    C  CG C   C  DAI+
Sbjct: 192 VVDESLCRDCK--RCAKECGSDAITYEKGKAHIDKTRCTGCGRCIGACSFDAIE 243


>gi|239817035|ref|YP_002945945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803612|gb|ACS20679.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 713

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           + C    CVEVC        +    + ++P  C+ CG C   CP  A
Sbjct: 320 VGCN--ACVEVCSAHAISSDKERQRIVVNPQLCVGCGACTTVCPTGA 364



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V  ++C LC    CV  CP     + +N   L      C+ CG+C   CP +AI
Sbjct: 579 VNKDSCTLCL--ACVSACPASALQDNQNAPQLRFIEKNCVQCGLCATTCPENAI 630



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           ++ D C  C  C   CP  A++ +       +++ N
Sbjct: 579 VNKDSCTLCLACVSACPASALQDNQNAPQLRFIEKN 614



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP  AI  D +  L
Sbjct: 192 IDLDLCTRCNACLGVCPEQAIGLDYQIDL 220


>gi|217979763|ref|YP_002363910.1| cytochrome c oxidase accessory protein CcoG [Methylocella
           silvestris BL2]
 gi|217505139|gb|ACK52548.1| cytochrome c oxidase accessory protein CcoG [Methylocella
           silvestris BL2]
          Length = 492

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +CI C    CV VCP      +G +        CI CG+C   C     K D  P L  +
Sbjct: 279 DCIDCGQ--CVAVCPTGVDIRQGPSL------GCIQCGLCIDACDTVMAKIDRPPRLIAY 330

Query: 67  -LKIN 70
              +N
Sbjct: 331 DTDLN 335


>gi|167590255|ref|ZP_02382643.1| formate dehydrogenase, beta subunit [Burkholderia ubonensis Bu]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|126727165|ref|ZP_01743002.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150]
 gi|126703593|gb|EBA02689.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150]
          Length = 163

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 62  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 118



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 62 ERCIACKLCEAICPAQAITIDAEPRDD 88



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124


>gi|88603095|ref|YP_503273.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188557|gb|ABD41554.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum
           hungatei JF-1]
          Length = 146

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 19/78 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF--------YEGENFLAIHPDE---------CIDCGV 45
           +V  E C  C   +CV  CPV+             + +  I+ D          C  CG+
Sbjct: 67  HVNMERCTGCN--NCVVACPVNALELNTVNPSSTDKIYKVINGDAVILDVKHELCAGCGI 124

Query: 46  CEPECPVDAIKPDTEPGL 63
           C   CP D I+   +P  
Sbjct: 125 CVDACPYDVIQLSGQPPQ 142


>gi|15679550|ref|NP_276667.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622676|gb|AAB86028.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 336

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP D      +           + I  + CI CG+CE  CPVDAI+
Sbjct: 100 ETCIQCK--ACETACPQDAITITRDLPERKDLITGEIEIDKETCIYCGMCEEMCPVDAIE 157

Query: 57  PDTEPG 62
            D +  
Sbjct: 158 IDHQVP 163



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 18/67 (26%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCE 47
           V  + C+ C    C  +CPVD                   E      I P+ C++CG C+
Sbjct: 176 VDEDKCVHCG--ICKRICPVDAITQVCRICPYGEYEIKVPEVTGTSYIDPELCVNCGWCQ 233

Query: 48  PECPVDA 54
             CPVDA
Sbjct: 234 EICPVDA 240



 Score = 41.3 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C+   CV  CP +           E    L      CI CG CE  CPVDAI+
Sbjct: 256 DTCQACE--TCVMACPCNVLSFPKPEKPGEKPAKLYKDERFCIYCGACERSCPVDAIE 311



 Score = 40.5 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y+  E C+ C    C E+CPVD       +EGE  L I  D C  C  C   CP + + 
Sbjct: 219 SYIDPELCVNCGW--CQEICPVDAATVTKPFEGE--LIIDEDTCQACETCVMACPCNVLS 274

Query: 57  PDTEP 61
                
Sbjct: 275 FPKPE 279



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C E+CPVD                   + +  D+C+ CG+C+  CPVDAI
Sbjct: 139 ETCIYCG--MCEEMCPVDAIEIDHQVPTSSSPAVATDIRVDEDKCVHCGICKRICPVDAI 196



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-----------YEGENFLAIHPDECIDCGVCEPECPVD 53
          + ++C+      C E+CPV+              + E+ + I  ++C+ CG+C   CP  
Sbjct: 12 IFQDCLCAVCGLCGEICPVNAIEVNPTGAMVRTEQDESKICIDENKCVLCGMCSSICPFQ 71

Query: 54 A 54
          A
Sbjct: 72 A 72



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I  + CI C  CE  CP DAI
Sbjct: 96  EIDDETCIQCKACETACPQDAI 117


>gi|56479116|ref|YP_160705.1| molybdenum enzyme related to thiosulfate reductase and polysulfide
           reductase, medium subunit [Aromatoleum aromaticum EbN1]
 gi|56315159|emb|CAI09804.1| Molybdenum enzyme related to thiosulfate reductase and polysulfide
           reductase, medium subunit [Aromatoleum aromaticum EbN1]
          Length = 236

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDA 54
           + +   C  C    CV  CPV+  ++ ++   +    + CI C  C   CP +A
Sbjct: 69  HFLPRLCNHCDDPPCVRSCPVEATFKVDDGGFVLQRYERCIGCRSCMAACPYNA 122


>gi|85703194|ref|ZP_01034298.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
 gi|85672122|gb|EAQ26979.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|304315500|ref|YP_003850647.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588959|gb|ADL59334.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 231

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C+       CP D    G   + I   +C  CG+C+  CP  A+
Sbjct: 146 ELCRRCEQCLAAAACPGDAIVPG---VEIRLLKCRGCGLCQSACPYGAV 191


>gi|257790213|ref|YP_003180819.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474110|gb|ACV54430.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 178

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            V   C+ C++  C +VCP    Y  ++ +  +  ++CI C  C   CP  
Sbjct: 53  TVPVQCMHCENAPCQQVCPTHATYTTDSGVVLVDEEKCIGCKYCMAACPYG 103


>gi|255655141|ref|ZP_05400550.1| electron transport complex protein [Clostridium difficile
           QCD-23m63]
 gi|296451129|ref|ZP_06892870.1| electron transport complex protein RnfB [Clostridium difficile
           NAP08]
 gi|296880519|ref|ZP_06904481.1| electron transport complex protein RnfB [Clostridium difficile
           NAP07]
 gi|296259950|gb|EFH06804.1| electron transport complex protein RnfB [Clostridium difficile
           NAP08]
 gi|296428473|gb|EFH14358.1| electron transport complex protein RnfB [Clostridium difficile
           NAP07]
          Length = 323

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  CI C    CV+ C  D     +    I P++C+ C  C  +CP   I  D
Sbjct: 211 TAGCIGCG--MCVKACKFDAIIFEDKIAKIDPNKCVGCMQCVAKCPTKVISGD 261



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C + C  D     +    I  ++C++CG C+  CP   I        E+ ++ NS+  
Sbjct: 146 CKDACKFDAISIVDGVAVIDEEKCVNCGKCKEVCPKG-IIITKPESQEVVVECNSKEF 202



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C  T C + C  D    E +    +  D+C+ C +C  +CP  AIK
Sbjct: 273 ELCVGC--TVCKKQCKFDAIEGELKEKHKVDADKCVGCHLCMEKCPKKAIK 321



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    CV  CP          +  + I  + C+ C VC+ +C  DAI+ + +   +
Sbjct: 243 CVGC--MQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK 299



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI----HPDE------------CIDCGVCEPEC 50
           E C+ C    C EVCP            +    +  E            CI CG+C   C
Sbjct: 167 EKCVNCG--KCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 224

Query: 51  PVDAIKPDTE 60
             DAI  + +
Sbjct: 225 KFDAIIFEDK 234


>gi|229917628|ref|YP_002886274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Exiguobacterium sp. AT1b]
 gi|229469057|gb|ACQ70829.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Exiguobacterium sp. AT1b]
          Length = 180

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDAIKPDTE 60
           C+ CK+  C +VCP +        + +    ++CI C  C   CP    K D E
Sbjct: 52  CMQCKNPACAQVCPANAIQITPEGVVLSASEEKCIGCRNCTFACPFGIPKFDFE 105


>gi|167577285|ref|ZP_02370159.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|254974676|ref|ZP_05271148.1| electron transport complex protein [Clostridium difficile
           QCD-66c26]
 gi|255092064|ref|ZP_05321542.1| electron transport complex protein [Clostridium difficile CIP
           107932]
 gi|255100156|ref|ZP_05329133.1| electron transport complex protein [Clostridium difficile
           QCD-63q42]
 gi|255306046|ref|ZP_05350218.1| electron transport complex protein [Clostridium difficile ATCC
           43255]
 gi|255313801|ref|ZP_05355384.1| electron transport complex protein [Clostridium difficile
           QCD-76w55]
 gi|255516482|ref|ZP_05384158.1| electron transport complex protein [Clostridium difficile
           QCD-97b34]
 gi|255649582|ref|ZP_05396484.1| electron transport complex protein [Clostridium difficile
           QCD-37x79]
 gi|260682746|ref|YP_003214031.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260686344|ref|YP_003217477.1| electron transport complex protein [Clostridium difficile R20291]
 gi|306519708|ref|ZP_07406055.1| electron transport complex protein [Clostridium difficile
           QCD-32g58]
 gi|260208909|emb|CBA61897.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260212360|emb|CBE03172.1| electron transport complex protein [Clostridium difficile R20291]
          Length = 323

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           T  CI C    CV+ C  D     +    I P++C+ C  C  +CP   I  D
Sbjct: 211 TAGCIGCG--MCVKACKFDAIIFEDKIAKIDPNKCVGCMQCVAKCPTKVISGD 261



 Score = 42.8 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C + C  D     +    I  ++C++CG C+  CP   I        E+ ++ NS+  
Sbjct: 146 CKDACKFDAISIVDGIAVIDEEKCVNCGKCKEVCPKG-IIITKPESQEVVVECNSKEF 202



 Score = 40.9 bits (95), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C  T C + C  D    E +    +  D+C+ C +C  +CP  AIK
Sbjct: 273 ELCVGC--TVCKKQCKFDAIEGELKEKHKVDADKCVGCHLCMEKCPKKAIK 321



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C+ C    CV  CP          +  + I  + C+ C VC+ +C  DAI+ + +   +
Sbjct: 243 CVGC--MQCVAKCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK 299



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 18/70 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI----HPDE------------CIDCGVCEPEC 50
           E C+ C    C EVCP            +    +  E            CI CG+C   C
Sbjct: 167 EKCVNCG--KCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 224

Query: 51  PVDAIKPDTE 60
             DAI  + +
Sbjct: 225 KFDAIIFEDK 234


>gi|82523792|emb|CAI78535.1| pyruvate oxidoreductase [uncultured Chloroflexi bacterium]
          Length = 1181

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 37/109 (33%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY------------------------EGENFLA---IHP 37
           V + CI+C    CV VCP                             E  + L    + P
Sbjct: 685 VPDLCIMCG--KCVFVCPHAVIRAKVYEPQYLENAPETFKSRKANWKEFPDTLYSLQVAP 742

Query: 38  DECIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWP 78
           ++C  C +C   CPV         A+    +P +    ++N E+    P
Sbjct: 743 EDCTGCALCVEACPVKDKTQVGRKALNMIEQPPVREQERVNWEFFQSLP 791


>gi|327310505|ref|YP_004337402.1| 4Fe-4S ferredoxin [Thermoproteus uzoniensis 768-20]
 gi|326946984|gb|AEA12090.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Thermoproteus uzoniensis 768-20]
          Length = 100

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E C LC+   C  +CP  C+ +  + + +  + C++CG C   CP + I
Sbjct: 36 EKCRLCEKKPCTYMCPAKCYVQQGDIVVLSTEACLECGTCRVVCPYENI 84


>gi|294673994|ref|YP_003574610.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
 gi|294474248|gb|ADE83637.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
          Length = 274

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C    C++VCPVD   +G     IH   C  C  C   CPV AI
Sbjct: 204 VDEDVCIKCG--KCIKVCPVDNI-QGTPPEWIHNGRCTSCLACYHYCPVHAI 252



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +    +  D CI CG C   CPVD I+  T P  
Sbjct: 199 DKKFTVDEDVCIKCGKCIKVCPVDNIQ-GTPPEW 231


>gi|209694967|ref|YP_002262896.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
 gi|208008919|emb|CAQ79135.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
          Length = 558

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VT++C LC    CV VCP    +  ++   L     +C+ CG+C   CP  A+    +  
Sbjct: 421 VTKDCTLCMG--CVAVCPTRALHGDQDSPTLKFIEQDCVQCGLCVNACPEKALSMKVQMN 478

Query: 63  L 63
            
Sbjct: 479 W 479



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 17  CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CV+ CP          E  + + I+P  C   G C   CP +AI        +
Sbjct: 192 CVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCSTACPTEAISYALPEAEK 244



 Score = 37.4 bits (86), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 13/76 (17%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
             +  ++PD C         C  C   CP  A+  +        ++IN          +T
Sbjct: 169 PKYFRLNPDLCAHSSRGVKGCERCVDACPAGALTSEGTAETGHNIQINPYLCQGVGTCST 228

Query: 83  KKE------SLPSAAK 92
                    +LP A K
Sbjct: 229 ACPTEAISYALPEAEK 244


>gi|197117572|ref|YP_002137999.1| ferredoxin family protein [Geobacter bemidjiensis Bem]
 gi|197086932|gb|ACH38203.1| ferredoxin family protein [Geobacter bemidjiensis Bem]
          Length = 97

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          E C+ C    C+EVCP   F  E +  L    D C++CG C   CP  AI  D
Sbjct: 18 ELCVGCG--RCIEVCPHQVFQLEEKRALLADRDACMECGACALNCPAAAINVD 68


>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 634

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECP 51
           ++  + C  C    C + CP +    G+  + I   D+C  CG C   CP
Sbjct: 562 HIQPDKCKACG--TCFKQCPAEAIEGGKKRIHIIDQDKCTKCGTCLDVCP 609



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I PD+C  CG C  +CP +AI+
Sbjct: 561 FHIQPDKCKACGTCFKQCPAEAIE 584


>gi|115358128|ref|YP_775266.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria AMMD]
 gi|172062912|ref|YP_001810563.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria MC40-6]
 gi|115283416|gb|ABI88932.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Burkholderia ambifaria AMMD]
 gi|171995429|gb|ACB66347.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria MC40-6]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|327484144|gb|AEA78551.1| Iron-sulfur cluster-binding protein [Vibrio cholerae LMA3894-4]
          Length = 504

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
             +C LC    CV VCP    +   +   L     +C+ CG+C   CP  A
Sbjct: 368 ASDCTLC--MSCVAVCPTRALHPAGDSPALRFIEQDCVQCGLCVKACPEQA 416



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG +     + I+P  C   G C   CP +AI          + +++
Sbjct: 140 CVDACPAGALSSEGSDQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 198



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 117 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSDQTGHRIQIN 164


>gi|325830137|ref|ZP_08163594.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
 gi|325487604|gb|EGC90042.1| thiosulfate reductase electron transport protein phsb [Eggerthella
           sp. HGA1]
          Length = 178

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            V   C+ C++  C +VCP    Y  ++ +  +  ++CI C  C   CP  
Sbjct: 53  TVPVQCMHCENAPCQQVCPTHATYTTDSGVVLVDEEKCIGCKYCMAACPYG 103


>gi|325262526|ref|ZP_08129263.1| ferredoxin 2 [Clostridium sp. D5]
 gi|324032358|gb|EGB93636.1| ferredoxin 2 [Clostridium sp. D5]
          Length = 467

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C   +C++ CP            I    CIDCG C   CP  A
Sbjct: 13 DLCQGC--INCIKYCPTQAIRVHNGKAHIIDKFCIDCGRCIRYCPHHA 58


>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 597

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C  T C   CPV       +N   I+  +CI CG C  +C   AI
Sbjct: 549 CKGC--TACARACPVSAISGTLKNPHVINQLDCIKCGTCVEKCKFGAI 594



 Score = 41.3 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
               I P +C  C  C   CPV AI
Sbjct: 540 KKYMIDPAKCKGCTACARACPVSAI 564


>gi|147919860|ref|YP_686389.1| ech hydrogenase, subunit F [uncultured methanogenic archaeon
          RC-I]
 gi|110621785|emb|CAJ37063.1| Ech hydrogenase, subunit F [uncultured methanogenic archaeon
          RC-I]
          Length = 150

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 9  CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAI 55
          CILC    C   CP +C     E E    ++  +CI CG C   CP +AI
Sbjct: 43 CILCGL--CQRSCPPECIIIHKEKEEIEYLN-TQCIRCGYCVRVCPTNAI 89


>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
           [uncultured archaeon GZfos26D6]
          Length = 654

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECP--VDAI 55
           Y+  + C  C    C++ CP     EG+  +   I   +CI CG+C   CP  V A+
Sbjct: 563 YIEPDKCTAC--RLCMKNCPEGAI-EGDKRVIHVIDQTKCIKCGICYDVCPPKVGAV 616



 Score = 41.3 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
             I PD+C  C +C   CP  AI+ D
Sbjct: 562 YYIEPDKCTACRLCMKNCPEGAIEGD 587


>gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans]
          Length = 617

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP      E      I    CI C  C   C   AI
Sbjct: 566 VIEEDCTTCGL--CEPVCPSGSVTWEKGEVAHIDLTTCIRCKACVDACKFRAI 616



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP     +   ++ I  D C  CG+CEP CP  ++  +
Sbjct: 553 CPGTVCNDLIKYVVIEED-CTTCGLCEPVCPSGSVTWE 589


>gi|77918675|ref|YP_356490.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77544758|gb|ABA88320.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 417

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C+ C    C   CPV+   +   G+ +    P EC  C  C   CPVDAI  D  P 
Sbjct: 352 SQICVDCG--ACDRACPVEAAKDRLAGKKW----PAECFSCARCLRVCPVDAI--DYGPR 403

Query: 63  LEL 65
              
Sbjct: 404 WRQ 406



 Score = 44.0 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 17  CVEVCPVDC---FYE--GENFLAIHPDECIDCGVCEPECPVDA 54
           C  VCP      F E      + I    C+DCG C+  CPV+A
Sbjct: 327 CQLVCPFGWYAWFLEKISLTGVRIDSQICVDCGACDRACPVEA 369


>gi|269216154|ref|ZP_06160008.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
 gi|269130413|gb|EEZ61491.1| anaerobic dimethyl sulfoxide reductase, B subunit [Slackia exigua
           ATCC 700122]
          Length = 220

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
            Y V+  C  C +  C+E CP     +  +   + ++ D C   G C   CP  
Sbjct: 60  AYHVSAACNHCANPACMEACPAGAIEKDSDTRLVFVNQDACKGFGACVDACPYG 113


>gi|322421842|ref|YP_004201065.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18]
 gi|320128229|gb|ADW15789.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18]
          Length = 132

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C  VCP  C      E EN         I    CI CG C   CPVDAI+  
Sbjct: 51  CVACYL--CPTVCPAKCITVEAGEDENHDKYAAKYEIDMLRCIFCGYCVEACPVDAIRMT 108

Query: 59  TEPGLELW 66
            E  L  +
Sbjct: 109 EEFELANY 116


>gi|269791992|ref|YP_003316896.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099627|gb|ACZ18614.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 592

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 9   CILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ CK   C+   CP       +  + I   +C  CG+C   CP  AI  + E
Sbjct: 541 CVKCK--SCIRPGCP--AIAMKDGVIVIDTAQCNGCGLCLQLCPKGAISREGE 589


>gi|170702803|ref|ZP_02893656.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170132291|gb|EDT00766.1| formate dehydrogenase, beta subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFNVPR 149


>gi|157736568|ref|YP_001489251.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018]
 gi|315635731|ref|ZP_07890994.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22]
 gi|157698422|gb|ABV66582.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018]
 gi|315480028|gb|EFU70698.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22]
          Length = 166

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFL-----------AIHPDECIDCGVCEPECPVD 53
           +E C+ C    C   CP +C + E E               I   EC+ CG C   CP D
Sbjct: 73  SEKCVAC--FMCATACPAECIFIEAEERFDEHNEKRPKEFKIDLLECVFCGYCVEACPCD 130

Query: 54  AIKPDT 59
           AI+ DT
Sbjct: 131 AIRMDT 136



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           ++C+ C +C   CP + I  + E   +   +
Sbjct: 74  EKCVACFMCATACPAECIFIEAEERFDEHNE 104


>gi|149914591|ref|ZP_01903121.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b]
 gi|149811384|gb|EDM71219.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|220928118|ref|YP_002505027.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|219998446|gb|ACL75047.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium cellulolyticum H10]
          Length = 578

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V + C  C    C+++ CP     E  + L I+P  C+ C +C   C  +AI+
Sbjct: 525 IVQDKCKKC--RMCMKIGCP--AIVEKGDHLEINPALCVGCKLCTEICGFNAIE 574


>gi|145218861|ref|YP_001129570.1| sulfite reductase, dissimilatory-type beta subunit
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205025|gb|ABP36068.1| dissimilatory sulfite reductase beta subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 362

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 208 CELPKAVARCPVAAIRPTVVNGKRSLMVDEAKCICCGACFGACPAMEINHPEHSKFAIWV 267


>gi|284006928|emb|CBA72199.1| hydrogenase-4 component H [Arsenophonus nasoniae]
          Length = 180

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          G+ F  ++   CI CG CE  CP  AI+   E
Sbjct: 38  QQCIGCG--ACVNACPSNALTAEIDLPKGQLFWQLNLGRCIFCGRCEEVCPTAAIRLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWRK 103



 Score = 41.3 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE-PGLELWLKIN 70
          +P +CI CG C   CP +A+  + + P  +L+ ++N
Sbjct: 36 NPQQCIGCGACVNACPSNALTAEIDLPKGQLFWQLN 71


>gi|239817041|ref|YP_002945951.1| formate dehydrogenase, subunit alpha [Variovorax paradoxus S110]
 gi|239803618|gb|ACS20685.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus S110]
          Length = 957

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 17/71 (23%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVD--------CFYEGENFLAIHPD------ECIDCGVC 46
           M  V  + CI C    CV  C  +            G++ +    D       C+ CG C
Sbjct: 158 MA-VNLDACIQCN--RCVRACREEQVNDVIGYALRGGDSKIVFDLDDPMGDSTCVACGEC 214

Query: 47  EPECPVDAIKP 57
              CP  A+ P
Sbjct: 215 VQACPTGALMP 225


>gi|167840321|ref|ZP_02467005.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|167566351|ref|ZP_02359267.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis
           EO147]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|218778244|ref|YP_002429562.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759628|gb|ACL02094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 331

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C  C+   C+E C        EG     ++ D+C+ CGVC+  CP DAI  D E   +
Sbjct: 269 DACEECEL--CLERCVFKAIEMDEGIGAAVVNADKCMGCGVCQVTCPADAIVLD-EVREK 325

Query: 65  LWL 67
            ++
Sbjct: 326 EFI 328


>gi|150399527|ref|YP_001323294.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012230|gb|ABR54682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 253

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C+ C    C E+CPV         + +    CI CG CE  CPV AI  +
Sbjct: 199 EKCVDC--MVCSEICPVSAITYENGKMVVSKPVCIFCGKCEKNCPVTAISIE 248



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
          YV +  CI C    C E CPV    +   +N   I P+ C+ C +C   CPV AI
Sbjct: 42 YVESSKCIRCNL--CFEECPVSAIKKPSVKNPAEIIPENCVKCEICAKTCPVSAI 94



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++CI C    C + CP D    E +N + I+ + C+ C  CE  CP  +IK + E G   
Sbjct: 132 DSCIKCG--ICEKFCPTDAITVERKNSIDINLNLCMGCTACEKVCPKKSIKVENEMGKID 189

Query: 66  WLK 68
           + K
Sbjct: 190 FKK 192



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 28/81 (34%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--------EGENFLA------------------IHP 37
           ++ ENC+ C+   C + CPV            +G+  +                   I  
Sbjct: 74  IIPENCVKCE--ICAKTCPVSAINVLEGKAELKGDTVIYELNEVPVAHRKIRLKEHCIDM 131

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D CI CG+CE  CP DAI  +
Sbjct: 132 DSCIKCGICEKFCPTDAITVE 152



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C  T C +VCP                  + +  ++C+DC VC   CPV AI  +
Sbjct: 164 CMGC--TACEKVCPKKSIKVENEMGKIDFKKSIFLDNEKCVDCMVCSEICPVSAITYE 219



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             F   E  L +   +CI C +C  ECPV AIK
Sbjct: 31 TGSFLPVEKNLYVESSKCIRCNLCFEECPVSAIK 64


>gi|50306045|ref|XP_452984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642117|emb|CAH01835.1| KLLA0C17556p [Kluyveromyces lactis]
          Length = 607

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C                    I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKRSCPVVKTGKLCIEVMPTSKIAFISENLCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIQ 71


>gi|254253677|ref|ZP_04946994.1| Fe-S-cluster-containing hydrogenase [Burkholderia dolosa AUO158]
 gi|124898322|gb|EAY70165.1| Fe-S-cluster-containing hydrogenase [Burkholderia dolosa AUO158]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|330995605|ref|ZP_08319505.1| electron transfer flavoprotein FAD-binding domain protein
          [Paraprevotella xylaniphila YIT 11841]
 gi|329575011|gb|EGG56564.1| electron transfer flavoprotein FAD-binding domain protein
          [Paraprevotella xylaniphila YIT 11841]
          Length = 404

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CI C    C E C       G +F  +  + C  CG C   CPV A
Sbjct: 18 CISCG--ICAESCAYGAIRMG-DFPEVDEENCRLCGGCVQACPVGA 60



 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 39 ECIDCGVCEPECPVDAIKPDTEPGLEL 65
          +CI CG+C   C   AI+    P ++ 
Sbjct: 17 QCISCGICAESCAYGAIRMGDFPEVDE 43


>gi|289548611|ref|YP_003473599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182228|gb|ADC89472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 232

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y  E +  + ++ D+CI C +C   CP    + D 
Sbjct: 72  SCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWSCPYGCREFDE 125


>gi|260893735|ref|YP_003239832.1| 4Fe-4S ferredoxin [Ammonifex degensii KC4]
 gi|260865876|gb|ACX52982.1| 4Fe-4S ferredoxin [Ammonifex degensii KC4]
          Length = 317

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           +C+ C    CV  CP    Y+ E+ +  I  + C     C   CP   I 
Sbjct: 127 SCMHCTDPACVRACPSGAIYKREDGIVLIDQNLCKGFKACILACPYKRIF 176


>gi|269119596|ref|YP_003307773.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268613474|gb|ACZ07842.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 438

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPV--------DCFYEGE--NFLAIHPDECIDCGVCEPECP 51
           NCILC +  C EVCPV        + + +G+    L  + + CI+CG CE  CP
Sbjct: 363 NCILCGY--CSEVCPVYLMPMKFEEFYRKGKYKKLLEFNLNSCIECGACEYICP 414


>gi|255655546|ref|ZP_05400955.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451536|ref|ZP_06893271.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880115|ref|ZP_06904082.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259601|gb|EFH06461.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428840|gb|EFH14720.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 382

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 324 QDCIKCG--KCKEACPAATIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|224418322|ref|ZP_03656328.1| putative ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|253827643|ref|ZP_04870528.1| putative ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313141851|ref|ZP_07804044.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511049|gb|EES89708.1| putative ferredoxin [Helicobacter canadensis MIT 98-5491]
 gi|313130882|gb|EFR48499.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 512

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 15  TDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T CV+ CP       +N   L   P +CI CG C   CP  +++ +  P  
Sbjct: 173 TKCVDACPTFGVGANDNLMELVFSPVDCIACGACVGVCPTSSLEYEELPKE 223



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            + C LC    CV  C V+  +   +   L  +P  C  CG C   CP + I   +  G+
Sbjct: 379 ADKCTLCL--SCVGACNVNAIFAKSDDFSLRFNPSLCTTCGYCVDSCP-EKIMEVSREGM 435

Query: 64  EL---WLKINSEYATQWPNITTKKESL 87
            L   + K + E A   P +  +    
Sbjct: 436 RLESSYFK-SRELAKDTPFLCVECGKP 461



 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           L I  D+C  C  C   C V+AI   ++ 
Sbjct: 375 LKIDADKCTLCLSCVGACNVNAIFAKSDD 403


>gi|194292422|ref|YP_002008329.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit(beta
           subunit) [Cupriavidus taiwanensis LMG 19424]
 gi|193226326|emb|CAQ72275.1| Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit(beta
           subunit) [Cupriavidus taiwanensis LMG 19424]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +     D CI CG C   CP D  +
Sbjct: 97  DGCMHCEDPGCLKACPAPGAIVQYANGIVDFQSDLCIGCGYCVAGCPFDVPR 148



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           ++ CI C +  CV  CP D     + +N       +C  C           C   CP  A
Sbjct: 129 SDLCIGCGY--CVAGCPFDVPRISKLDNKAY----KCTLCSDRVAVGQEPACVKTCPTGA 182

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 183 IAFGSKAEMQ 192


>gi|167757158|ref|ZP_02429285.1| hypothetical protein CLORAM_02708 [Clostridium ramosum DSM 1402]
 gi|237735753|ref|ZP_04566234.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|167703333|gb|EDS17912.1| hypothetical protein CLORAM_02708 [Clostridium ramosum DSM 1402]
 gi|229381498|gb|EEO31589.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 260

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    CV +CP +   + E+   I+ D CI C  C   CPV A   +     + +
Sbjct: 187 EQCSGCGV--CVNMCPTNAI-DIEDCKTINND-CIACFRCIRICPVHAKSMNNNQEYQTF 242

Query: 67  LK 68
            +
Sbjct: 243 AE 244


>gi|158958055|sp|Q6MDQ8|NUOI_PARUW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
          Length = 157

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 18/77 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E C+ C+   C  VCP    Y              GE +     I+   CI CG CE  C
Sbjct: 56  ERCVGCEL--CAIVCPAQAIYVKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEAC 113

Query: 51  PVDAIKPDTEPGLELWL 67
           P  AI    +  L  + 
Sbjct: 114 PTGAIVLSNQYELSAYT 130


>gi|222053575|ref|YP_002535937.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562864|gb|ACM18836.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 593

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV E C+ C    C++ CP +    E      +  ++C  C  C   C   AI+
Sbjct: 542 VVEEKCVKCG--ACLKACPSNAIIWEKGQIAYLDKEKCTKCKSCYDACRFMAIE 593



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP +C  E   +  +  ++C+ CG C   CP +AI  +
Sbjct: 529 CPSNCCKELLLWQVV-EEKCVKCGACLKACPSNAIIWE 565


>gi|83590757|ref|YP_430766.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
          pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
          39073]
 gi|83573671|gb|ABC20223.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
          pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
          39073]
          Length = 96

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          E C  C    C   CP  CF  GE  + ++ D C  CG+C  ECP  A
Sbjct: 35 ERCNNCL--ACWLFCPEGCFRRGEEAVTLNLDFCKGCGICVTECPRQA 80


>gi|56697608|ref|YP_167977.1| NADH dehydrogenase subunit I [Ruegeria pomeroyi DSS-3]
 gi|81676166|sp|Q5LPS9|NUOI_SILPO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56679345|gb|AAV96011.1| NADH dehydrogenase I, I subunit [Ruegeria pomeroyi DSS-3]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|20093747|ref|NP_613594.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing
           [Methanopyrus kandleri AV19]
 gi|19886647|gb|AAM01524.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin
           containing [Methanopyrus kandleri AV19]
          Length = 357

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    CVEVCP            G+  +  HP+ C  CG C   CPV+AI
Sbjct: 270 VDDEECVGCGL--CVEVCPCGALEFEKGGKAGKTKIVAHPETCAYCGACARACPVNAI 325



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 13/61 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C E CP D              E E  + +  D+C+ CGVC   CPVDAI
Sbjct: 154 EKCIYCK--ACEEACPADAITVERPKPSAADPEPEFTIEVDEDKCVYCGVCMRTCPVDAI 211

Query: 56  K 56
           K
Sbjct: 212 K 212



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V   +C+ C    C  VCPVD        E  L +  +EC+ CG+C   CP  A++ +
Sbjct: 238 VDPSSCVYCGW--CGFVCPVDAIEVIKPYEGTLEVDDEECVGCGLCVEVCPCGALEFE 293



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 12/69 (17%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-----EGENFLA-----IHPDECIDCGVCEPECPVD 53
           V  E C+ C  + C + CP +             L      I  ++CI C  CE  CP D
Sbjct: 112 VDEEECVYC--SLCADTCPQEAITVEREVPTPGDLVMGEIEIDEEKCIYCKACEEACPAD 169

Query: 54  AIKPDTEPG 62
           AI  +    
Sbjct: 170 AITVERPKP 178



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 6  TENCILCKHTDCVEVCPVDCF---------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          T  C  C    C   CPV             +GE+ + +   +C+ CG+C   CP D I+
Sbjct: 33 TSKCAACG--ICEAACPVGAISVAPPSAVVRKGEDPIDVDESKCVLCGICAFVCPYDVIQ 90



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 20/71 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG------------------ENFLAIHPDECIDCGV 45
           V  + C+ C    C+  CPVD    G                  +  + + P  C+ CG 
Sbjct: 191 VDEDKCVYCGV--CMRTCPVDAIKVGCMVCYGTTRGEIPAKGEVDGSVDVDPSSCVYCGW 248

Query: 46  CEPECPVDAIK 56
           C   CPVDAI+
Sbjct: 249 CGFVCPVDAIE 259



 Score = 37.4 bits (86), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
          E  L I+  +C  CG+CE  CPV AI
Sbjct: 26 ERELVINTSKCAACGICEAACPVGAI 51



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 9   CILCKHTDCVEVCPVDCFY--------------EGENFLAIHPDECIDCGVCEPECPVDA 54
           C+LC    C  VCP D                      + +  +EC+ C +C   CP +A
Sbjct: 74  CVLCG--ICAFVCPYDVIQLLVNGKPMTEAGLPNLPKSVEVDEEECVYCSLCADTCPQEA 131

Query: 55  IKPDTEPG 62
           I  + E  
Sbjct: 132 ITVEREVP 139


>gi|76666839|emb|CAJ31216.1| Hdr-like menaquinol-oxidizing enzyme, subunit A (HmeA) [uncultured
           sulfate-reducing bacterium]
          Length = 248

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C  C +  C  VCPV   Y+ ++ + I     CI C  C   CP +
Sbjct: 109 CNHCDNPPCALVCPVQATYKRKDGIVICDKHRCIGCRYCLIACPYN 154


>gi|86148458|ref|ZP_01066748.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio sp. MED222]
 gi|85833755|gb|EAQ51923.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio sp. MED222]
          Length = 228

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHKEKCVGCGYCLLACPYQ 145


>gi|311103542|ref|YP_003976395.1| formate dehydrogenase subunit beta [Achromobacter xylosoxidans A8]
 gi|310758231|gb|ADP13680.1| formate dehydrogenase, beta subunit [Achromobacter xylosoxidans A8]
          Length = 299

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIIQYTNGIVDFHEENCIGCGYCITGCPFNVPR 149


>gi|291562108|emb|CBL40924.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium
           SS3/4]
          Length = 373

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           C  C    C + C  D          I  D+C  CG C   C  DAI        EL  +
Sbjct: 197 CRGCG--RCAKECGSDAITYVNKKAVIDYDKCKGCGRCIGACSFDAIYNPNYNANELLDR 254

Query: 69  INSEYAT 75
             +EYA 
Sbjct: 255 KMAEYAQ 261


>gi|226326078|ref|ZP_03801596.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758]
 gi|225205620|gb|EEG87974.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758]
          Length = 295

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C+ C    C   C +D    +  +    HP ECI CG C   CP +AI
Sbjct: 235 VDPEKCVNC--QKCSHACKMDVNVVDTPD----HP-ECIRCGACMKACPTNAI 280



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 17  CVEVCPVDCFYEGENFLA-----IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  +CP+   Y   N ++     + P++C++C  C   C +D    DT    E
Sbjct: 212 CKWICPLGAIYSLFNKISLLKIKVDPEKCVNCQKCSHACKMDVNVVDTPDHPE 264


>gi|224371399|ref|YP_002605563.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium
           autotrophicum HRM2]
 gi|223694116|gb|ACN17399.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium
           autotrophicum HRM2]
          Length = 168

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           C  C+   C+  C        E+ + + + D+CI C  C   CP   I
Sbjct: 63  CRQCEDAPCMHACISGAITRNEDNIVVTNADKCIGCWTCVMVCPYGVI 110


>gi|167573463|ref|ZP_02366337.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis
           C6786]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEENCIGCGYCVTGCPFN 146


>gi|153874620|ref|ZP_02002769.1| NADH-quinone oxidoreductase, chain I [Beggiatoa sp. PS]
 gi|152068913|gb|EDN67228.1| NADH-quinone oxidoreductase, chain I [Beggiatoa sp. PS]
          Length = 150

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 49  ERCIACKL--CEAVCPALAITIEAAPREDGTRRTTRYDIDLTKCIFCGYCEESCPVDSI 105



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +  P  +
Sbjct: 49 ERCIACKLCEAVCPALAITIEAAPRED 75


>gi|145595045|ref|YP_001159342.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora tropica CNB-440]
 gi|145304382|gb|ABP54964.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Salinispora tropica CNB-440]
          Length = 85

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V+ + C  C    C+  CP          L I  D C  C  C   CPV AI+      L
Sbjct: 10 VLVDACQGCG--ACLLTCPTHAIRPVPGGLVIRADRCTGCLECLEICPVGAIRAAGPRHL 67

Query: 64 EL 65
          E 
Sbjct: 68 EE 69


>gi|108758967|ref|YP_630943.1| NADH dehydrogenase I subunit I [Myxococcus xanthus DK 1622]
 gi|122981133|sp|Q1D8T0|NUOI_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|108462847|gb|ABF88032.1| NADH dehydrogenase I, I subunit [Myxococcus xanthus DK 1622]
          Length = 254

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 21/70 (30%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENF------------------LAIHPDECIDCGVCEPE 49
           C+ C    C  +CP  C Y E   +                    I    CI CG+C   
Sbjct: 88  CVAC--YMCATICPAQCIYIEAGEYEDEASDSEDRVIEKYPTQFVIDELRCIVCGLCVDA 145

Query: 50  CPVDAIKPDT 59
           CP DAI+ DT
Sbjct: 146 CPKDAIRMDT 155


>gi|70608047|ref|YP_256917.1| NADH dehydrogenase subunit I [Sulfolobus acidocaldarius DSM 639]
 gi|68568695|gb|AAY81624.1| NADH-quinone oxidoreductase [Sulfolobus acidocaldarius DSM 639]
          Length = 165

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D        G+    I+   C+ CG C   CPVDA++ 
Sbjct: 60  DICIGC--TLCALICPADAMKMTTEAGKKLPVINYGRCVFCGFCVDVCPVDALRE 112



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + ++ D CI C +C   CP DA+K  TE G +L
Sbjct: 54 MIRLYKDICIGCTLCALICPADAMKMTTEAGKKL 87


>gi|134299685|ref|YP_001113181.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052385|gb|ABO50356.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 159

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           Y +   C  C+   C+E CP++   + +    + +H D+CI C  C   CP   I  + E
Sbjct: 47  YHIPITCASCEKAPCIEACPMEAIQKDKETGGVILHQDQCIGCKQCIQSCPFGHINFNFE 106

Query: 61  PG 62
            G
Sbjct: 107 KG 108


>gi|308163098|gb|EFO65459.1| Nitroreductase Fd-NR2 [Giardia lamblia P15]
          Length = 264

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
          T+ C  C    CVEVCP            +   + D CI CG C   CP  +I
Sbjct: 10 TDTCTGCN--MCVEVCPTAVLKVDPETKVVAYANRDNCIFCGHCGAICPTGSI 60


>gi|300921216|ref|ZP_07137589.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
 gi|300411822|gb|EFJ95132.1| 4Fe-4S binding domain protein [Escherichia coli MS 115-1]
          Length = 112

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C++  CV  CPV     GE  +  +   CI C  C   CP   I
Sbjct: 55  CHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMI 101


>gi|299145932|ref|ZP_07039000.1| ferredoxin-type protein [Bacteroides sp. 3_1_23]
 gi|298516423|gb|EFI40304.1| ferredoxin-type protein [Bacteroides sp. 3_1_23]
          Length = 442

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          + L I   + + C+ CG CE  
Sbjct: 345 MGYVVFIEENCIVYTDGTSCGACSEHCPTQAVAMVPYKDGLTIPHVNKEICVGCGGCEYV 404

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     AI  +  P  + 
Sbjct: 405 CPARPFRAIYIEGNPVQKE 423


>gi|296272509|ref|YP_003655140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096683|gb|ADG92633.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 557

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECP-VDAIKPDTEPGL 63
           ENC LC    CV  C VD       +N L I+   C  CG C   CP  D I  +++   
Sbjct: 428 ENCTLCL--SCVGACNVDALVADARDNTLRINSSLCTSCGYCLVTCPEADCISIESDV-- 483

Query: 64  ELWLKINSEYATQ 76
              + +N  + T+
Sbjct: 484 ---IHLNKTWFTE 493



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 17  CVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C +VCP     + +    L+    +C+ CG C   CP  +++  T        +++  Y+
Sbjct: 219 CEDVCPTVAITKDDKTKTLSFSMVDCLGCGGCISICPSGSLEY-TPMSRTSIYEVSKFYS 277

Query: 75  TQWPNITTKK 84
            + P I   K
Sbjct: 278 GKIPLIIPNK 287


>gi|317052339|ref|YP_004113455.1| hypothetical protein Selin_2179 [Desulfurispirillum indicum S5]
 gi|316947423|gb|ADU66899.1| hypothetical protein Selin_2179 [Desulfurispirillum indicum S5]
          Length = 377

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CV+ CP     +  + + I  D C  CG C   CPV A+
Sbjct: 31 CVDACPFGALQQQGSSIEIDHDRCTLCGACVAACPVLAV 69


>gi|33596549|ref|NP_884192.1| putative iron-sulfur binding protein [Bordetella parapertussis
           12822]
 gi|33566318|emb|CAE37231.1| putative iron-sulfur binding protein [Bordetella parapertussis]
          Length = 705

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V ++ C LC    CV  CP +   +      L +    C+ CG+C   CP +AI
Sbjct: 571 VDSDACTLC--MSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAI 622



 Score = 46.3 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           + C    C+++C         +   + ++P+ C+ CG C   CP  A
Sbjct: 323 VGC--RACIDICSARAISSDSHHQRIVVNPNLCVGCGACTTVCPSGA 367



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D C  C  C   CP  AI  D +  
Sbjct: 200 IDLDLCTRCNACISACPDGAIGLDYQVD 227



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPG 62
           + C  C    C+  CP            +    C     CE  C V  AI     P 
Sbjct: 203 DLCTRCN--ACISACPDGAIGLD---YQVDTARCTSHRACEQACSVAGAIDFSRSPE 254



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +A+  D C  C  C   CP +A+  + +      ++ N
Sbjct: 569 VAVDSDACTLCMSCVSACPSNALLDNPQSPQLRMVEKN 606


>gi|189346228|ref|YP_001942757.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           limicola DSM 245]
 gi|189340375|gb|ACD89778.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobium
           limicola DSM 245]
          Length = 359

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVNGKRSLMVDEAKCICCGACFGACPAMEINHPEHSKFAIWV 264


>gi|57237409|ref|YP_178422.1| ferredoxin, 4Fe-4S [Campylobacter jejuni RM1221]
 gi|86149239|ref|ZP_01067471.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86151455|ref|ZP_01069670.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153761|ref|ZP_01071964.1| ferredoxin [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597321|ref|ZP_01100556.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121613118|ref|YP_001000066.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157414651|ref|YP_001481907.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005023|ref|ZP_02270781.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni 81-176]
 gi|218562013|ref|YP_002343792.1| ferredoxin [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|283955779|ref|ZP_06373270.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni 1336]
 gi|57166213|gb|AAW34992.1| ferredoxin, 4Fe-4S [Campylobacter jejuni RM1221]
 gi|85840597|gb|EAQ57854.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85841802|gb|EAQ59049.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842722|gb|EAQ59934.1| ferredoxin [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87250140|gb|EAQ73098.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88190382|gb|EAQ94356.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359719|emb|CAL34505.1| ferredoxin [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|157385615|gb|ABV51930.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni 81116]
 gi|283792734|gb|EFC31512.1| putative ferredoxin [Campylobacter jejuni subsp. jejuni 1336]
 gi|284925626|gb|ADC27978.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315057778|gb|ADT72107.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Campylobacter
          jejuni subsp. jejuni S3]
 gi|315927843|gb|EFV07168.1| ferredoxin [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930661|gb|EFV09682.1| ferredoxin [Campylobacter jejuni subsp. jejuni 305]
 gi|315931567|gb|EFV10533.1| ferredoxin [Campylobacter jejuni subsp. jejuni 327]
          Length = 81

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++C+ C    C E CP +  YE      I PD C +C        C   CP + 
Sbjct: 1  MSLLITKDCVCCD--ACREECPDEAIYENSPIYVIDPDLCSECVNDFSEPACIVACPYEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|303246786|ref|ZP_07333063.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
 gi|302491803|gb|EFL51683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
          Length = 776

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFY----EGENF-LAIHPDECIDCGVCEPECP 51
            C  C    C  +CP         E + F +   P +CI CG C   CP
Sbjct: 717 ACRDCGV--CTMICPTGAISRNQLEDKEFEMVSDPAKCIGCGFCANACP 763



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 10/17 (58%)

Query: 39  ECIDCGVCEPECPVDAI 55
            C DCGVC   CP  AI
Sbjct: 717 ACRDCGVCTMICPTGAI 733


>gi|300719111|ref|YP_003743914.1| formate dehydrogenase-O, iron-sulfur subunit [Erwinia billingiae
           Eb661]
 gi|299064947|emb|CAX62067.1| formate dehydrogenase-O, iron-sulfur subunit [Erwinia billingiae
           Eb661]
          Length = 298

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFESEQCIGCGYCIAGCPFDVPRLNKEDN 155


>gi|289427411|ref|ZP_06429124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J165]
 gi|289159341|gb|EFD07532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J165]
          Length = 595

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+C  C  C  +CPV AI
Sbjct: 492 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCTGCATCFDQCPVHAI 551

Query: 56  K 56
           +
Sbjct: 552 E 552


>gi|239815798|ref|YP_002944708.1| cytochrome C oxidase accessory protein CcoG [Variovorax paradoxus
           S110]
 gi|239802375|gb|ACS19442.1| cytochrome c oxidase accessory protein CcoG [Variovorax paradoxus
           S110]
          Length = 486

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP      +G         ECI CG+C   C
Sbjct: 280 DCIDCGL--CVQVCPTGIDIRQGLQH------ECIGCGLCVDAC 315



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 5/24 (20%)

Query: 35  IHPDE-----CIDCGVCEPECPVD 53
           I P       CIDCG+C   CP  
Sbjct: 271 IDPRSMALGDCIDCGLCVQVCPTG 294


>gi|120601153|ref|YP_965553.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris DP4]
 gi|120561382|gb|ABM27126.1| glutamate synthase (NADPH) GltB3 subunit [Desulfovibrio vulgaris
           DP4]
          Length = 777

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 6   TENCILCKHTD----CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
            E C+ C        C  +CP          EG   + +  + CI CG C   CP
Sbjct: 710 GEACVSCGACRDCGVCETICPQGAISRRDLGEGRFEMTVDGERCIGCGFCAGACP 764



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 39  ECIDCGVCEPECPVDAI 55
            C DCGVCE  CP  AI
Sbjct: 718 ACRDCGVCETICPQGAI 734


>gi|114319795|ref|YP_741478.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226189|gb|ABI55988.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 254

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CP    ++ ++ +  +    C  C +C P CP DA   D E G
Sbjct: 61  CQHCDDAPCVSACPTGAAWKRDDGIVLVDDPLCSGCELCVPACPYDARWLDPETG 115


>gi|312879841|ref|ZP_07739641.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783132|gb|EFQ23530.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
          Length = 434

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 1  MTYVV---TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          M++ V      C  C   +C++ CP +        + I P+ CIDCG C   C
Sbjct: 1  MSHSVKVFEAACKGC--VNCLKSCPTEAIRVVNGSIRILPELCIDCGECLRTC 51


>gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia
           bacterium enrichment culture clone BF]
          Length = 603

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y VTE  C  C    C + CP      E +   A+   +CI CG+C   C  DAI
Sbjct: 545 YEVTEEKCKGCG--RCNKQCPTGAIAGEKKQPFALDQGKCIRCGLCINACKFDAI 597



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
             +  ++C  CG C  +CP  AI  + +   
Sbjct: 545 YEVTEEKCKGCGRCNKQCPTGAIAGEKKQPF 575


>gi|253998391|ref|YP_003050454.1| NADH dehydrogenase subunit I [Methylovorus sp. SIP3-4]
 gi|313200468|ref|YP_004039126.1| NADH-quinone oxidoreductase subunit I [Methylovorus sp. MP688]
 gi|253985070|gb|ACT49927.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. SIP3-4]
 gi|312439784|gb|ADQ83890.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. MP688]
          Length = 163

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPAMAITIESEQREDNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 118



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 62 ERCIACKLCEAVCPAMAITIESEQRED 88


>gi|241763296|ref|ZP_04761353.1| NADH-quinone oxidoreductase, chain I [Acidovorax delafieldii 2AN]
 gi|241367571|gb|EER61858.1| NADH-quinone oxidoreductase, chain I [Acidovorax delafieldii 2AN]
          Length = 169

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 68  ERCIACKL--CEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 124



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 68 ERCIACKLCEAVCPAMAITIESD 90


>gi|210623084|ref|ZP_03293571.1| hypothetical protein CLOHIR_01521 [Clostridium hiranonis DSM 13275]
 gi|210153887|gb|EEA84893.1| hypothetical protein CLOHIR_01521 [Clostridium hiranonis DSM 13275]
          Length = 309

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           + C  CK      VCPV      +  + +  D+CI+CG C  +C
Sbjct: 172 DKCKSCKKCAVEAVCPVGAAKLVDGTMVVDYDKCINCGRCIEKC 215



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 10/47 (21%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVC--EPECPVDA 54
           V  CP +C           G    AI+ D+C  C  C  E  CPV A
Sbjct: 144 VGGCPNNCVKPNLNDLGVIGARVPAINLDKCKSCKKCAVEAVCPVGA 190


>gi|281357468|ref|ZP_06243956.1| electron transport complex, RnfABCDGE type, B subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281316071|gb|EFB00097.1| electron transport complex, RnfABCDGE type, B subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 283

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 17  CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           C   CP        N   +H + C+ CG C   CP   IK       ++ +  N
Sbjct: 148 CAHHCPFGAIEMINNLAVVHRELCVGCGNCVAACPRGVIK-LVPADADVHIYCN 200


>gi|119357225|ref|YP_911869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chlorobium phaeobacteroides DSM 266]
 gi|119354574|gb|ABL65445.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
          phaeobacteroides DSM 266]
          Length = 62

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M + ++E C  C    C   CPV     G+    I  + C DC        C   CPVD 
Sbjct: 1  MAHRISEECTYC--AACEPECPVSAISAGDEIYIIDENVCTDCVGYHDEAACVLVCPVDC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|330817784|ref|YP_004361489.1| NADH dehydrogenase subunit I [Burkholderia gladioli BSR3]
 gi|327370177|gb|AEA61533.1| NADH dehydrogenase subunit I [Burkholderia gladioli BSR3]
          Length = 162

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESQVRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 61 ERCIACKLCEAVCPAMAITIESQ 83


>gi|319408587|emb|CBI82242.1| NADH dehydrogenase I chain I [Bartonella schoenbuchensis R1]
          Length = 166

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 64  ERCIACKL--CEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAI 121


>gi|282853212|ref|ZP_06262549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J139]
 gi|282582665|gb|EFB88045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J139]
          Length = 595

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+C  C  C  +CPV AI
Sbjct: 492 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCTGCATCFDQCPVHAI 551

Query: 56  K 56
           +
Sbjct: 552 E 552


>gi|165975559|ref|YP_001651152.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875660|gb|ABY68708.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 225

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|154495028|ref|ZP_02034033.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC
           43184]
 gi|154085578|gb|EDN84623.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC
           43184]
          Length = 336

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
              CI C    C + CP +      N   I   +C  C  C   CP  AI     P  + 
Sbjct: 216 ANACIGCG--KCAKECPFEAITVENNVAYIDYTKCRLCRKCVAVCPTGAIHELNFPPRKE 273



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 13  KHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
            + DCV  C  D  +         +  D+C  CG C   CP + I+
Sbjct: 142 GYGDCVAACNFDAIHINLETGLPEVDEDKCTSCGACVKACPKNIIE 187


>gi|150399525|ref|YP_001323292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012228|gb|ABR54680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 394

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 17/63 (26%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGVCEPECPV 52
           +CI C   +CVE CP +    G                  L I  + C+ C  CE  CPV
Sbjct: 83  SCINCG--NCVESCPTEVLEMGTLRKEASGLSWNVPKKINLVIDSEVCVSCSSCEKVCPV 140

Query: 53  DAI 55
           DAI
Sbjct: 141 DAI 143



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPD----ECIDCGVCEPECPVDAIK 56
           E CI C  + C E CP D      N     I PD     CI+CG C   CP + ++
Sbjct: 47  EKCISC--SACAESCPSDAILMKHNEEYNRIMPDFDDGSCINCGNCVESCPTEVLE 100



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V E CI CK  +CV+VCP     + E    +    C+ CG C   CP  AI+
Sbjct: 216 IVPELCINCK--NCVDVCPG--LIDIEKLTVV---TCVKCGHCLSVCPTSAIR 261



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD-AIKPDTEPGL 63
           +E C+ C  + C +VCPVD        +  I  + C+ C  C   CPV+ AI    E  L
Sbjct: 125 SEVCVSC--SSCEKVCPVDAISHNRFSIYKIDVNSCVSCKKCIDSCPVENAILTYDELSL 182

Query: 64  ELWLKI 69
              + +
Sbjct: 183 SNKIDV 188



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 3   YVVTEN-CILCKHTDCVEVCPV-DC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + +  CI C    C + C V +     +  N   I P  C+ CG+CE  CPVDA+
Sbjct: 276 HTINDKKCIGC--RICYKSCNVPNALNISKETNLPYIDPIYCVRCGICENVCPVDAV 330



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 37 PDECIDCGVCEPECPVDAI 55
          P++CI C  C   CP DAI
Sbjct: 46 PEKCISCSACAESCPSDAI 64


>gi|119595091|gb|EAW74685.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_a [Homo
           sapiens]
          Length = 175

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 37.4 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 150 CIYCGF--CQEACPVDAIVEGPNF 171


>gi|115718576|ref|XP_001203141.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115774766|ref|XP_001182876.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 586

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV      C           I    CI CG+C  +CP +A
Sbjct: 13 VNADKCKPKKCR-QECRKSCPVVRMGKLCIEVTPASKIAYISEQLCIGCGICVKKCPFEA 71

Query: 55 IK 56
          I 
Sbjct: 72 IH 73


>gi|254975082|ref|ZP_05271554.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092471|ref|ZP_05321949.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255314210|ref|ZP_05355793.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516888|ref|ZP_05384564.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649989|ref|ZP_05396891.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683140|ref|YP_003214425.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686738|ref|YP_003217871.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520065|ref|ZP_07406412.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|260209303|emb|CBA62685.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212754|emb|CBE03883.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 382

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 324 QDCIKCG--KCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|52548568|gb|AAU82417.1| archaeal flavoproteins [uncultured archaeon GZfos17C7]
 gi|52549777|gb|AAU83626.1| archaeal flavoprotein [uncultured archaeon GZfos32E4]
 gi|52550226|gb|AAU84075.1| archaeal flavoproteins [uncultured archaeon GZfos36D8]
          Length = 267

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M Y +  + C  C   +  + C  D  Y G     I    C  CG+C   CP  AI
Sbjct: 153 MPYSIDRDKCRGCDDCEPRDSCERDAIY-GAPIPQIDLLRCDGCGLCSELCPYGAI 207


>gi|91773049|ref|YP_565741.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91712064|gb|ABE51991.1| Uncharacterized Fe-S protein [Methanococcoides burtonii DSM 6242]
          Length = 231

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 18/62 (29%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECID----------CGVCEPE 49
           M + + + C  C    C+E+CPVD    EG     IH ++C D          CG+C   
Sbjct: 173 MPF-INDACSKC--MKCIEICPVDALTSEG----VIHREKCADYMFNVLGGLRCGLCIKV 225

Query: 50  CP 51
           CP
Sbjct: 226 CP 227


>gi|70729299|ref|YP_259036.1| iron-sulfur cluster-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68343598|gb|AAY91204.1| iron-sulfur cluster-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 471

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +CI C  T CV+VCP        + L I   ECI C  C   C  D+I    E
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC--DSIMDKME 312


>gi|148266246|ref|YP_001232952.1| NADH-quinone oxidoreductase, chain I [Geobacter uraniireducens Rf4]
 gi|146399746|gb|ABQ28379.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4]
          Length = 132

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C  VCP  C      E EN         I    CI CG C   CPVDAI+  
Sbjct: 51  CVACYL--CPTVCPAKCITVEAGEDENHDKFAAKYEIDMLRCIFCGYCVEACPVDAIRMT 108

Query: 59  TEPGLELW 66
               L  +
Sbjct: 109 DTFELASY 116


>gi|332797249|ref|YP_004458749.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Acidianus hospitalis W1]
 gi|332694984|gb|AEE94451.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus
          hospitalis W1]
          Length = 94

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ CI CK   C   CP   +    +  +A+H + C++CG     CP  AIK     G
Sbjct: 28 VNTDICINCKDKPCTVSCPAGTYEALPDGRIAVHYERCLECGGALVICPFGAIKFRFPEG 87


>gi|325291003|ref|YP_004267184.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966404|gb|ADY57183.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 577

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 18/83 (21%)

Query: 6   TENCILCKHTDCVEVC----PVDCF---YEGENFLAIHPDE-------CIDCGVCEPECP 51
           T  C+LC    CV VC     VD     + G       P E       CI+CG C   CP
Sbjct: 144 TSKCVLCG--RCVSVCSSVQNVDAIDFAHRGPQTSVTTPYEEKLTARNCINCGQCIKVCP 201

Query: 52  VDAIKPDTEPGLELWLKI-NSEY 73
           V A+  + +    +W  + NSE 
Sbjct: 202 VGAL-SERDDTDLVWAALENSEL 223


>gi|319761770|ref|YP_004125707.1| NADH-quinone oxidoreductase, chain i [Alicycliphilus denitrificans
           BC]
 gi|330826550|ref|YP_004389853.1| NAD(P)H-quinone oxidoreductase subunit I [Alicycliphilus
           denitrificans K601]
 gi|317116331|gb|ADU98819.1| NADH-quinone oxidoreductase, chain I [Alicycliphilus denitrificans
           BC]
 gi|329311922|gb|AEB86337.1| NAD(P)H-quinone oxidoreductase subunit I [Alicycliphilus
           denitrificans K601]
          Length = 170

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 69  ERCIACKL--CEAVCPAMAITIESDVRSDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 125



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 69 ERCIACKLCEAVCPAMAITIESD 91


>gi|308512759|gb|ADO33033.1| pixie [Biston betularia]
          Length = 608

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGEN--FLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C+  +C + CPV      C     N     I  + CI CG+C  +CP +A
Sbjct: 19 VNADRCKPKRCR-QECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|298674390|ref|YP_003726140.1| CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon
           [Methanohalobium evestigatum Z-7303]
 gi|298287378|gb|ADI73344.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 801

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 13/56 (23%)

Query: 6   TENCILCKHTDCVEVCPV-----DCFYEGEN-----FLAIHPDECIDCGVCEPECP 51
           TE C+ CK  +C  VCP      D     E      F  +H D+CI CG CE  CP
Sbjct: 409 TERCVHCK--ECELVCPTNLSISDAMSAAETGDFAPFEELH-DKCIGCGRCEQVCP 461


>gi|259419188|ref|ZP_05743105.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B]
 gi|259345410|gb|EEW57264.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI 
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 120

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   A
Sbjct: 121 EGPNFEFATETREELFYDKDKLLA 144


>gi|255656355|ref|ZP_05401764.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-23m63]
 gi|296450201|ref|ZP_06891962.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP08]
 gi|296878582|ref|ZP_06902587.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP07]
 gi|296260964|gb|EFH07798.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP08]
 gi|296430389|gb|EFH16231.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP07]
          Length = 595

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 543 DKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 595


>gi|220903726|ref|YP_002479038.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868025|gb|ACL48360.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 260

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCP    Y+ ++ +  +    CI C  C   CP  A
Sbjct: 121 CNHCTNPPCVRVCPTQATYKMDDGIVAMDYHRCIGCRFCMAGCPYGA 167


>gi|212702371|ref|ZP_03310499.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098]
 gi|212674249|gb|EEB34732.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098]
          Length = 289

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           ++CI C    C ++C  +     +    I  D C  CGVC   CP  AI        + +
Sbjct: 66  DDCIRCGQ--CADLCRFEAVRPHDGGFLID-DHCEGCGVCVKLCPQQAIDFPDNHCGDWY 122

Query: 67  L 67
           +
Sbjct: 123 V 123



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          I  D+CI CG C   C  +A++P  
Sbjct: 63 IRQDDCIRCGQCADLCRFEAVRPHD 87


>gi|149920733|ref|ZP_01909197.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis
           pacifica SIR-1]
 gi|149818386|gb|EDM77837.1| pyruvate formate-lyase-activating enzyme, putative [Plesiocystis
           pacifica SIR-1]
          Length = 318

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 6   TENCI---LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C     C  + CV VCP      G         +C  CG C   CP  A
Sbjct: 53  AERCARIPGC--SACVGVCPEGALGLGVEGRV-DWSKCTGCGACVDACPAQA 101


>gi|116329474|ref|YP_799194.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|122282746|sp|Q04XD4|NUOI_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116122218|gb|ABJ80261.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 175

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 19/74 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFL----AIHPDE------------CIDCGVCEPE 49
           E C  C    C+ +CP D  Y E    +     +HP++            CI CG+CE  
Sbjct: 76  ERCTSC--FCCMWICPADAIYIEAGEVVPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEA 133

Query: 50  CPVDAIKPDTEPGL 63
           CP  AI  D    +
Sbjct: 134 CPKGAIYLDGPGEM 147


>gi|126699129|ref|YP_001088026.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|255306494|ref|ZP_05350665.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|115250566|emb|CAJ68390.1| putative iron-sulfur protein [Clostridium difficile]
          Length = 382

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 324 QDCIKCG--KCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|71907446|ref|YP_285033.1| formate dehydrogenase beta subunit [Dechloromonas aromatica RCB]
 gi|71847067|gb|AAZ46563.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Dechloromonas aromatica RCB]
          Length = 295

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 95  DGCMHCSDPGCLKACPSPGAIIQYSNGIVDFHQENCIGCGYCVTGCPFNVPR 146


>gi|325960232|ref|YP_004291698.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325331664|gb|ADZ10726.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 347

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C   CP +                  + I  + CIDCG+CE  CP DAI 
Sbjct: 114 ETCIYCK--ACERACPREAITVARQLPDRSKLVTGEIDIDKETCIDCGICEEMCPADAIT 171

Query: 57  PDTEPGLELWLKINSE 72
            D +   +  + ++ +
Sbjct: 172 IDQKGPEDFDIAVDKD 187



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 7   ENCILCKHTDCVEVCPVD--------CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CV+VCP D             ++ L      CI CG CE  CPV+AI
Sbjct: 266 DKCTTCG--ACVDVCPCDVLFFPKSSAPGTIDDKLMKDEQFCIYCGACENVCPVEAI 320



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEG-----------ENFLAIHPDECIDCGVCEPECPVDAI 55
          E+C+ C    C  +CPV     G           E+ + I  ++C+ CG+C   CPVDA+
Sbjct: 30 ESCVGCGV--CESICPVGAIKLGSVGAIVRNDIDESKIEIDEEKCVLCGMCSVGCPVDAL 87

Query: 56 KPDTE 60
          +   +
Sbjct: 88 EFTVD 92



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 20/85 (23%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY------------------EGENFLAIHPDECIDCGV 45
           V  + C+ C    C + CPVD                     E      I  D C+ CG 
Sbjct: 184 VDKDKCVYCLV--CKKACPVDAIMAACRTCSYGEYDLNPEDAETTGKALIDDDACVRCGW 241

Query: 46  CEPECPVDAIKPDTEPGLELWLKIN 70
           CE  CPVDA K +     EL L ++
Sbjct: 242 CEEVCPVDAAKVEKPFEGELSLDLD 266



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C E+CP D     +       +A+  D+C+ C VC+  CPVDAI
Sbjct: 153 ETCIDCG--ICEEMCPADAITIDQKGPEDFDIAVDKDKCVYCLVCKKACPVDAI 204



 Score = 41.3 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + C+ C    C EVCPVD       +EGE  L++  D+C  CG C   CP D +  
Sbjct: 234 DACVRCGW--CEEVCPVDAAKVEKPFEGE--LSLDLDKCTTCGACVDVCPCDVLFF 285



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 17/64 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL---------------AIHPDECIDCGVCEPECP 51
           E C+LC    C   CPVD      +                  I  + CI C  CE  CP
Sbjct: 70  EKCVLCG--MCSVGCPVDALEFTVDGTPISEIETYPKLISSAEIDDETCIYCKACERACP 127

Query: 52  VDAI 55
            +AI
Sbjct: 128 REAI 131



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 23 VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V+   E +  L+   + C+ CGVCE  CPV AIK
Sbjct: 15 VERSAEEDRELSFKDESCVGCGVCESICPVGAIK 48


>gi|296272276|ref|YP_003654907.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arcobacter nitrofigilis DSM 7299]
 gi|296096451|gb|ADG92401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
          nitrofigilis DSM 7299]
          Length = 178

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFY----EGENFLA--IHPDECIDCGVCEPECPVDAI 55
          ENCI C  T C   CP +       E +  L        CI CG C+  CP  AI
Sbjct: 37 ENCIGC--TACGVACPSNAINVKLNEDKTKLVWEFDAARCIFCGRCDEVCPTGAI 89


>gi|238793375|ref|ZP_04637001.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
           29909]
 gi|238727344|gb|EEQ18872.1| 4Fe-4S ferredoxin, iron-sulfur binding [Yersinia intermedia ATCC
           29909]
          Length = 173

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP      G + + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCENSCPNGAIVTGSHGVQVMASHCIGCKTCMLVCPFGA 103


>gi|269792306|ref|YP_003317210.1| Fe-S cluster domain-containing protein [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269099941|gb|ACZ18928.1| Fe-S cluster domain protein [Thermanaerovibrio acidaminovorans
          DSM 6589]
          Length = 434

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 1  MTYVV---TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          M++ V      C  C   +C++ CP +     +  + I  D CIDCG C   C
Sbjct: 1  MSHSVRIFESACKGC--VNCLKSCPTEAIRVVDGSIRILKDLCIDCGECLRTC 51


>gi|255100556|ref|ZP_05329533.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 382

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++CI C    C E CP      G     I   +CI C  C   CP  AI
Sbjct: 324 QDCIKCG--KCKEACPASTIEIGTKGAIIDLSKCIRCYCCHELCPKKAI 370


>gi|254456806|ref|ZP_05070234.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
 gi|207085598|gb|EDZ62882.1| 4Fe-4S ferredoxin, iron-sulfur binding [Campylobacterales bacterium
           GD 1]
          Length = 566

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V   NC LC    CV  C V+       +N L I+P  C  CG CE  CP    + D   
Sbjct: 424 VNEANCTLCL--ACVGACNVNALVANIDDNSLRINPSICTACGYCEVSCP----EADCLT 477

Query: 62  GLELWLKINSEYATQ 76
             +  +K+N  +  +
Sbjct: 478 IEQNVIKLNPTWFKE 492



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 17  CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           C EVCP       + E  L     +C  CG C   CP  A
Sbjct: 218 CEEVCPTVAIIKIDEEKHLEFSQIDCHGCGGCISVCPSGA 257


>gi|182412302|ref|YP_001817368.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1]
 gi|177839516|gb|ACB73768.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1]
          Length = 180

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 21/108 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCEPEC 50
           E C+ C    C  VCP                            I    CI CG+C+  C
Sbjct: 67  EKCVSC--QLCEFVCPPKAIRIWPGEIAADAPTAHVERAPREFEIDMLRCIYCGMCQEVC 124

Query: 51  PVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPS-AAKMDGVK 97
           P +AI    +  +  + +  +E       +     +LP    K D  K
Sbjct: 125 PEEAIFLQQQYTMTGYTR--AEMVNNKQRLYELGGTLPDQHFKWDKKK 170


>gi|50841651|ref|YP_054878.1| putative glutamate synthase (NADPH) small subunit
           [Propionibacterium acnes KPA171202]
 gi|289424167|ref|ZP_06425950.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes SK187]
 gi|295129728|ref|YP_003580391.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           associated with PFOR [Propionibacterium acnes SK137]
 gi|50839253|gb|AAT81920.1| dehydrogenase, GltD family [Propionibacterium acnes KPA171202]
 gi|289154864|gb|EFD03546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes SK187]
 gi|291375698|gb|ADD99552.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           associated with PFOR [Propionibacterium acnes SK137]
 gi|332674564|gb|AEE71380.1| protein YgfK [Propionibacterium acnes 266]
          Length = 595

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+C  C  C  +CPV AI
Sbjct: 492 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCTGCATCFDQCPVHAI 551

Query: 56  K 56
           +
Sbjct: 552 E 552


>gi|134298507|ref|YP_001112003.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051207|gb|ABO49178.1| putative adenylylsulfate reductase-associated electron transfer
           protein QmoA [Desulfotomaculum reducens MI-1]
          Length = 414

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 22/71 (30%)

Query: 5   VTENCILCKHTDCVEVCPVD---CFYEGENF---------------LAIHPDECID--CG 44
           VT+NC  C    C EVCPV+    F  G +                  I    C    CG
Sbjct: 101 VTDNCTGCG--KCSEVCPVERANAFNLGMDKTKAVYLPQPFAYPMKYVIDNTACTGASCG 158

Query: 45  VCEPECPVDAI 55
            C   C V AI
Sbjct: 159 KCVEVCDVKAI 169


>gi|113475555|ref|YP_721616.1| transcriptional regulator [Trichodesmium erythraeum IMS101]
 gi|110166603|gb|ABG51143.1| transcriptional regulator [Trichodesmium erythraeum IMS101]
          Length = 530

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          MT+ +TENC+ C        CP    +      +I+P+ C  C G      C   C + +
Sbjct: 1  MTHKMTENCLGCATCLPKIQCPTGAIFVENEQYSINPELCNGCEGYYEEPQCVVHCSISS 60

Query: 55 IKPDTEPGLELWLK 68
            P         ++
Sbjct: 61 PVPLQPKKGRYKVE 74


>gi|322791201|gb|EFZ15738.1| hypothetical protein SINV_11846 [Solenopsis invicta]
          Length = 608

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C   CPV      C     N    AI  + CI CG+C  +CP +A
Sbjct: 19 VNSDKCKPKRCR-QECKRSCPVVRMGKLCIEVTPNSKIAAISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|313764837|gb|EFS36201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL013PA1]
 gi|313792724|gb|EFS40805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA1]
 gi|313803388|gb|EFS44570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA2]
 gi|313807034|gb|EFS45532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL087PA2]
 gi|313814047|gb|EFS51761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL025PA1]
 gi|313815601|gb|EFS53315.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL059PA1]
 gi|313817819|gb|EFS55533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL046PA2]
 gi|313821355|gb|EFS59069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL036PA1]
 gi|313824704|gb|EFS62418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL036PA2]
 gi|313826368|gb|EFS64082.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL063PA1]
 gi|313828941|gb|EFS66655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL063PA2]
 gi|313839448|gb|EFS77162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL086PA1]
 gi|314916399|gb|EFS80230.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA4]
 gi|314917239|gb|EFS81070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL050PA1]
 gi|314921614|gb|EFS85445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL050PA3]
 gi|314926390|gb|EFS90221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL036PA3]
 gi|314930738|gb|EFS94569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL067PA1]
 gi|314955142|gb|EFS99547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL027PA1]
 gi|314959339|gb|EFT03441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL002PA1]
 gi|314961511|gb|EFT05612.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL002PA2]
 gi|314964098|gb|EFT08198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL082PA1]
 gi|314969207|gb|EFT13305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL037PA1]
 gi|314980076|gb|EFT24170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL072PA2]
 gi|314986930|gb|EFT31022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA2]
 gi|314990577|gb|EFT34668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA3]
 gi|315078796|gb|EFT50818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL053PA2]
 gi|315081729|gb|EFT53705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL078PA1]
 gi|315082955|gb|EFT54931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL027PA2]
 gi|315086475|gb|EFT58451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL002PA3]
 gi|315088189|gb|EFT60165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL072PA1]
 gi|315099589|gb|EFT71565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL059PA2]
 gi|315102180|gb|EFT74156.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL046PA1]
 gi|315107545|gb|EFT79521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL030PA1]
 gi|315109948|gb|EFT81924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL030PA2]
 gi|327333850|gb|EGE75567.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL096PA3]
 gi|327334733|gb|EGE76444.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL097PA1]
 gi|327444681|gb|EGE91335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL013PA2]
 gi|327454431|gb|EGF01086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL087PA3]
 gi|327456498|gb|EGF03153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL083PA2]
 gi|327457233|gb|EGF03888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL092PA1]
 gi|328756191|gb|EGF69807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL087PA1]
 gi|328758186|gb|EGF71802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL020PA1]
 gi|328758573|gb|EGF72189.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL025PA2]
          Length = 605

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+C  C  C  +CPV AI
Sbjct: 502 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCTGCATCFDQCPVHAI 561

Query: 56  K 56
           +
Sbjct: 562 E 562


>gi|298246358|ref|ZP_06970164.1| NADH-quinone oxidoreductase, chain I [Ktedonobacter racemifer DSM
           44963]
 gi|297553839|gb|EFH87704.1| NADH-quinone oxidoreductase, chain I [Ktedonobacter racemifer DSM
           44963]
          Length = 208

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDE------------CIDCGVCEPEC 50
           E C+ C    C   CP D  Y    E      + P E            CI CG C+  C
Sbjct: 50  ERCVGCYL--CAGACPADAIYIEAAENTEEERVSPGERYARVFDVNMLRCIFCGYCQAAC 107

Query: 51  PVDAIKPDTEPGLELW 66
           P  AI  + E  L  +
Sbjct: 108 PTGAITLEKEYKLASF 123


>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
           NADH-quinone oxidoreductase chain F related [uncultured
           archaeon]
          Length = 658

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECP--VDAI 55
           Y+  + C  C    C++ CP     EG+  +   I    CI CG+C   CP  V A+
Sbjct: 563 YIDPDKCTAC--RLCMKNCPEGAI-EGDKRVIHVIDQTLCIKCGICYDVCPSKVGAV 616



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPD 58
             I PD+C  C +C   CP  AI+ D
Sbjct: 562 FYIDPDKCTACRLCMKNCPEGAIEGD 587


>gi|260221131|emb|CBA29389.1| Electron transport complex protein rnfB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 229

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CI C  T C++ CP D            I P  C  C +C P CPVD I  +T  G  
Sbjct: 91  CIGC--TLCIKACPTDAIIGSNKRMHTVIEP-HCTGCELCLPVCPVDCIMVETVSGER 145



 Score = 37.4 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 28  EGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E    +  I  D CI C +C   CP DAI
Sbjct: 78  EAPRTVVFIDEDWCIGCTLCIKACPTDAI 106


>gi|219854097|ref|YP_002471219.1| hypothetical protein CKR_0754 [Clostridium kluyveri NBRC 12016]
 gi|219567821|dbj|BAH05805.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 466

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECP-VDAIKPDT 59
          E C  C    C +VCPVD     +GE   AI  ++CI CG C   C    +I  D 
Sbjct: 16 ELCTGC--RRCADVCPVDAIGGNKGEPQ-AIDMEKCIMCGQCIQICKGYYSIYDDV 68



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I  + C  C  C   CPVDAI
Sbjct: 10 MINIDRELCTGCRRCADVCPVDAI 33


>gi|170761427|ref|YP_001785345.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408416|gb|ACA56827.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 387

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI+
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPTLIEEKCIGCNRCAEVCP 332


>gi|187921197|ref|YP_001890229.1| formate dehydrogenase subunit beta [Burkholderia phytofirmans PsJN]
 gi|187719635|gb|ACD20858.1| formate dehydrogenase, beta subunit [Burkholderia phytofirmans
           PsJN]
          Length = 310

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGYCITGCPFN 146


>gi|187479613|ref|YP_787638.1| formate dehydrogenase, iron-sulfur subunit [Bordetella avium 197N]
 gi|115424200|emb|CAJ50753.1| nformate dehydrogenase, iron-sulfur subunit [Bordetella avium 197N]
          Length = 299

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIIQYNNGIVDFHEENCIGCGYCITGCPFNVPR 149


>gi|46581693|ref|YP_012501.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451116|gb|AAS97761.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235329|gb|ADP88183.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris RCH1]
          Length = 776

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 6   TENCILCKHTD----CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
            E C+ C        C  +CP          EG   + +  + CI CG C   CP
Sbjct: 709 GEACVSCGACRDCGVCETICPQGAISRRDLGEGRFEMTVDGERCIGCGFCAGACP 763



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 39  ECIDCGVCEPECPVDAI 55
            C DCGVCE  CP  AI
Sbjct: 717 ACRDCGVCETICPQGAI 733


>gi|124268409|ref|YP_001022413.1| ferredoxin [Methylibium petroleiphilum PM1]
 gi|124261184|gb|ABM96178.1| ferredoxin [Methylibium petroleiphilum PM1]
          Length = 99

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++CI C    C   CP      G     I P +C +C        C   CPV  
Sbjct: 1  MALMITDDCINCDV--CEPECPNQAISLGPEIYIIDPAKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|32035313|ref|ZP_00135316.1| COG0437: Fe-S-cluster-containing hydrogenase components 1
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207590|ref|YP_001052815.1| nitrate reductase [Actinobacillus pleuropneumoniae L20]
 gi|190149370|ref|YP_001967895.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250236|ref|ZP_07336437.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303251925|ref|ZP_07338096.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096382|gb|ABN73210.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|189914501|gb|ACE60753.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302649355|gb|EFL79540.1| nitrate reductase, Fe-S protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302650947|gb|EFL81102.1| nitrate reductase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 225

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|325970481|ref|YP_004246672.1| cobyrinic acid ac-diamide synthase [Spirochaeta sp. Buddy]
 gi|324025719|gb|ADY12478.1| Cobyrinic acid ac-diamide synthase [Spirochaeta sp. Buddy]
          Length = 291

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C EVC  D    G     I    C  C  C   CPV AI 
Sbjct: 69  CIACN--RCFEVCRFDAVIPGP-TYRIDLITCEGCTYCLHVCPVGAIH 113


>gi|322804288|emb|CBZ01838.1| iron-sulfur cluster-binding protein [Clostridium botulinum H04402
           065]
          Length = 387

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI+
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPTLIEEKCIGCNRCAEVCP 332


>gi|314922500|gb|EFS86331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL001PA1]
 gi|314965577|gb|EFT09676.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL082PA2]
 gi|314982739|gb|EFT26831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA3]
 gi|315091393|gb|EFT63369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA4]
 gi|315094328|gb|EFT66304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL060PA1]
 gi|315105052|gb|EFT77028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL050PA2]
 gi|327329120|gb|EGE70880.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL103PA1]
          Length = 605

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+C  C  C  +CPV AI
Sbjct: 502 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCTGCATCFDQCPVHAI 561

Query: 56  K 56
           +
Sbjct: 562 E 562


>gi|313772692|gb|EFS38658.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL074PA1]
 gi|313811173|gb|EFS48887.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL083PA1]
 gi|313832174|gb|EFS69888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL007PA1]
 gi|313834333|gb|EFS72047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL056PA1]
 gi|314974430|gb|EFT18525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL053PA1]
 gi|314977381|gb|EFT21476.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL045PA1]
 gi|314985426|gb|EFT29518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA1]
 gi|315097261|gb|EFT69237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL038PA1]
 gi|327331224|gb|EGE72963.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL096PA2]
 gi|327447403|gb|EGE94057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL043PA1]
 gi|327450412|gb|EGE97066.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL043PA2]
 gi|328759538|gb|EGF73144.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL099PA1]
          Length = 605

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   TYVVTENCILCKHT----DCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
            +     C+ C +      C   CP D   +    +    + D+C  C  C  +CPV AI
Sbjct: 502 AHFEAGRCLSCGNCFECDGCYGSCPEDAIIKLGKGHRYEFNYDKCTGCATCFDQCPVHAI 561

Query: 56  K 56
           +
Sbjct: 562 E 562


>gi|291521285|emb|CBK79578.1| C_GCAxxG_C_C family probable redox protein [Coprococcus catus GD/7]
          Length = 452

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           TE C  CK       CP+      +  + I PD+C  CG C  +CP 
Sbjct: 313 TELCKGCKKCQLEAACPISLPKVVDGKVFIDPDKCNRCGRCLHKCPF 359


>gi|284008903|emb|CBA75736.1| formate dehydrogenase, beta subunit [Arsenophonus nasoniae]
          Length = 315

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +     + CI CG C   CP +
Sbjct: 96  DGCMHCADPGCLKACPSAGAIIQYANGIVDFDSEHCIGCGYCIAGCPFN 144


>gi|210623066|ref|ZP_03293553.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275]
 gi|210153869|gb|EEA84875.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275]
          Length = 306

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C+E C  D   E     ++    C  CGVCE  CP  AI
Sbjct: 67  DKCIQCG--KCMENCRFDSIMEKNGEFSVKKFGCEGCGVCEYVCPSSAI 113



 Score = 37.1 bits (85), Expect = 0.90,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           I  D+CI CG C   C  D+I
Sbjct: 63 VIDQDKCIQCGKCMENCRFDSI 84


>gi|171185123|ref|YP_001794042.1| NADH dehydrogenase subunit I [Thermoproteus neutrophilus V24Sta]
 gi|170934335|gb|ACB39596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 156

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TE C  C    C  +CP +         G+ +  I    CI C  C   CP DA+ P   
Sbjct: 51  TEKCTSC--MLCARICPTNAIKMYMEPNGKRYPGIDYGRCIMCHFCIDVCPTDALYPTDI 108

Query: 61  PGLELW 66
             L  +
Sbjct: 109 KELAWY 114


>gi|154151379|ref|YP_001404997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999931|gb|ABS56354.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 428

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           Y+    C  C    C+EVCPV+ +                      + +    + CI+CG
Sbjct: 93  YIDMVACTGCGD--CIEVCPVEVYNRFDAGVGVRKAIYKPHPQVVPDRVVKDNEHCIECG 150

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C   AI  +     
Sbjct: 151 LCYDSCGPQAILREDTEKE 169


>gi|77920193|ref|YP_358008.1| glutamate synthase subunit alpha-like [Pelobacter carbinolicus DSM
           2380]
 gi|77546276|gb|ABA89838.1| glutamate synthase (NADPH) GltB3 subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 771

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 9/54 (16%)

Query: 7   ENCILCKH----TDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
           + CI C      T C+E CP          +G          CI CG+C   CP
Sbjct: 707 DRCISCGSCRDCTLCLETCPEGAIVREEKPDGTFEYVSDEKYCIGCGLCAGICP 760



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPG 62
           C DC +C   CP  AI  + +P 
Sbjct: 715 CRDCTLCLETCPEGAIVREEKPD 737


>gi|332704369|ref|ZP_08424457.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554518|gb|EGJ51562.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 582

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+E CI C    C   CP+    +  +       ECI C VC   CP  AI
Sbjct: 250 VSEKCIECG--KCQRACPMQAIADDPHATR--HGECILCRVCAGVCPTGAI 296



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           ++CI+CG C+  CP+ AI  D
Sbjct: 252 EKCIECGKCQRACPMQAIADD 272



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 4   VVTENCILCKHTD----CVEVCPVDCFY----EGENFLAIHPDE--CIDCGVCEPECPV 52
           V  E C+  K       C EVCP          G      H DE  C  CG CE  CPV
Sbjct: 435 VNRETCLAWKDKKKCLVCDEVCPYGAVELKPEPGNPVYVPHVDEKRCAGCGYCEHFCPV 493


>gi|326494394|dbj|BAJ90466.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326504534|dbj|BAJ91099.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506398|dbj|BAJ86517.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 604

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C                    I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVSPAAKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|284162822|ref|YP_003401445.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012819|gb|ADB58772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 249

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C+H  CV+VC     Y+ E+ + +     CI C  C   CP +A +   EP  E   
Sbjct: 105 CQECEHPGCVQVCLTQASYKREDGIVVVDLHRCIGCRYCMIACPYNARRFLFEPPEEHLT 164

Query: 68  KINSE 72
            +N E
Sbjct: 165 VVNPE 169


>gi|163783140|ref|ZP_02178134.1| dimethylsulfoxide reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881474|gb|EDP74984.1| dimethylsulfoxide reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 177

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C    CV  CP       E +  + +    CI C  C   CP  AI
Sbjct: 57  NCFHCDPAPCVMACPTSAMRKREKDGIVYVEELLCIGCKACIIACPYGAI 106


>gi|149202658|ref|ZP_01879630.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035]
 gi|149143940|gb|EDM31974.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119


>gi|126699996|ref|YP_001088893.1| indolepyruvate oxidoreductase subunit [Clostridium difficile 630]
 gi|255101532|ref|ZP_05330509.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-63q42]
 gi|115251433|emb|CAJ69266.1| Indole pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           difficile]
          Length = 595

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 543 DKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 595


>gi|254975966|ref|ZP_05272438.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-66c26]
 gi|255093353|ref|ZP_05322831.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CIP
           107932]
 gi|255315099|ref|ZP_05356682.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-76w55]
 gi|255517769|ref|ZP_05385445.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-97b34]
 gi|255650882|ref|ZP_05397784.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-37x79]
 gi|306520773|ref|ZP_07407120.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-32g58]
          Length = 595

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 543 DKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 595


>gi|33602759|ref|NP_890319.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33577201|emb|CAE35758.1| putative ferredoxin [Bordetella bronchiseptica RB50]
          Length = 213

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CPVD I  D  P
Sbjct: 81  VIDEAHCIGC--TLCIKACPVDAIVGANKRMHTVLADWCTGCDLCVAPCPVDCI--DMRP 136

Query: 62  GLELWLK 68
              +W +
Sbjct: 137 AARVWSE 143


>gi|125972951|ref|YP_001036861.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
 gi|256005707|ref|ZP_05430663.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
 gi|125713176|gb|ABN51668.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
 gi|255990338|gb|EEU00464.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
 gi|316940813|gb|ADU74847.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
          Length = 566

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 9   CILCKHTDCVEVCP----VDCF---YEGENFLA-------IHPDECIDCGVCEPECPVDA 54
           CILC    CV VC     V      Y G            I    C+ CG C   CP  A
Sbjct: 148 CILCGD--CVRVCNEVQNVGAIDFAYRGSKMTISTVFDKPIFESNCVGCGQCALACPTGA 205

Query: 55  IKPDTEPGLELWLKI 69
           I    +   ++W +I
Sbjct: 206 IVVKDD-TQKVWKEI 219


>gi|167628355|ref|YP_001678854.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
 gi|167591095|gb|ABZ82843.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
          Length = 374

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C++ CP D     E    +  D+CI C  C+  CP  A++
Sbjct: 313 DKCIGC--RICLQSCPADALRM-ERIPQLDKDKCIGCLCCQEMCPERAVE 359



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
              D+CI C +C   CP DA++ +  P L+ 
Sbjct: 310 FDRDKCIGCRICLQSCPADALRMERIPQLDK 340


>gi|163748504|ref|ZP_02155758.1| formate-dependent nitrite reductase complex Fe-S centers
           [Shewanella benthica KT99]
 gi|161332082|gb|EDQ02759.1| formate-dependent nitrite reductase complex Fe-S centers
           [Shewanella benthica KT99]
          Length = 231

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C++  CV VCP    + + E  +  ++ D C+ C  C   CP     I P T+   
Sbjct: 99  SCQHCENAPCVTVCPTGAAYIDSETGIVGVNADMCVGCQYCIAACPYQVRFINPVTKAAD 158

Query: 64  E 64
           +
Sbjct: 159 K 159


>gi|163748761|ref|ZP_02156013.1| Hypothetical pyruvate formate lyase activating enzyme [Shewanella
           benthica KT99]
 gi|161331535|gb|EDQ02340.1| Hypothetical pyruvate formate lyase activating enzyme [Shewanella
           benthica KT99]
          Length = 307

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDA 54
            + + + C  C    C+  CP         +G   +    D CI+C  C   CP  A
Sbjct: 57  PHTIGQ-CDSCGL--CIPSCPAQALSLHETDGSGLIHWDKDLCIECDACLQACPKQA 110


>gi|148643058|ref|YP_001273571.1| polyferredoxin, MvhB [Methanobrevibacter smithii ATCC 35061]
 gi|148552075|gb|ABQ87203.1| polyferredoxin, MvhB [Methanobrevibacter smithii ATCC 35061]
          Length = 413

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV+ CPV      E    ++I  D CI CG+C   CP +A+    +   + 
Sbjct: 145 DCVGCG--TCVDPCPVSAITLDEIGGTISIADDVCIKCGLCSQTCPWNAVFIAEKKPAKR 202

Query: 66  WLKINSE 72
              IN+ 
Sbjct: 203 AKTINAF 209



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    CVE CP D       N   + PD C  C +C   CP DA+  D E
Sbjct: 216 CIGCN--TCVEACPGDFIKANSANLSVLIPDACAACQLCVKLCPTDALSMDVE 266



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C+E CP +  +   N        C  CG C   CP  A+  
Sbjct: 366 CNECGD--CIEACPYNMLHATGNEKFPIMGFCTLCGQCIDACPKHALYD 412



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           +  + D CI CG CE  CP  AI
Sbjct: 1  MIVFNEDGCIRCGACEGTCPTSAI 24



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 11/59 (18%)

Query: 9  CILCKH-TDCVEVCPVDC-------FYEGEN---FLAIHPDECIDCGVCEPECPVDAIK 56
          C  C     C +VCP            EG      L  +   C  CG CE  CP D IK
Sbjct: 34 CDTCGGEPKCADVCPEGALKVETYSIAEGAEEQIRLVFNSTLCNSCGKCEEACPQDTIK 92



 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDA 54
           + + C  C    CV++CP D                  L    ++C   G C  +CP +A
Sbjct: 242 IPDACAAC--QLCVKLCPTDALSMDVEWAEGVPADTEGLGYDAEKCDFVGACANKCPTEA 299

Query: 55  IKPDTEPGL 63
           I+  T+ G+
Sbjct: 300 IRVVTKTGM 308



 Score = 34.0 bits (77), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C E CP D      N L      C+ C  C   CPVD I
Sbjct: 76  CNSCG--KCEEACPQDTIKLTGNDLMEVEGFCVMCQKCVDICPVDVI 120


>gi|160899056|ref|YP_001564638.1| RnfABCDGE type electron transport complex subunit B [Delftia
           acidovorans SPH-1]
 gi|160364640|gb|ABX36253.1| electron transport complex, RnfABCDGE type, B subunit [Delftia
           acidovorans SPH-1]
          Length = 238

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ E  CI C  T C++ CP D       F+  +    C  C +C P CPVD I+
Sbjct: 86  VIDEAWCIGC--TLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCIE 138


>gi|38489083|gb|AAR21230.1| indolepyruvate oxidoreductase II alpha subunit [Methanococcus
           voltae PS]
          Length = 599

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +E C  CK   C+ + CP   F        I+   C+ CG+C   C   AI+
Sbjct: 542 VNSEKCNGCKL--CLRIGCPAISFNNETKKAEINKSLCVGCGLCVDVCKRSAIE 593


>gi|329955179|ref|ZP_08296136.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328526178|gb|EGF53197.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 608

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 8  NCILCKHTDCVEVCPVDCFY---EGENFLA--IHPDECIDCGVCEPECPV---DAIKPDT 59
           C  C    C + CP        + E FL   I  D CI C +CE  CPV   DA+K + 
Sbjct: 9  ECCGCNV--CGDACPKGAITFFEDNEGFLYPSIDDDLCIKCNICEKVCPVINIDALKQND 66

Query: 60 EPGLELWLKINSEY 73
                +  I+   
Sbjct: 67 FAHPHCFAAIHRNL 80


>gi|310828376|ref|YP_003960733.1| hypothetical protein ELI_2789 [Eubacterium limosum KIST612]
 gi|308740110|gb|ADO37770.1| hypothetical protein ELI_2789 [Eubacterium limosum KIST612]
          Length = 100

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + +NC  C    CV VCP      + E  L    D C  CG+C   CP DAI
Sbjct: 45 IADNCKQCLL--CVPVCPDSSIPVKDERRLDFDMDHCKGCGICAKVCPFDAI 94


>gi|296444802|ref|ZP_06886765.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium
           OB3b]
 gi|296257750|gb|EFH04814.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium
           OB3b]
          Length = 162

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYA 74
                P  E  ++   E  
Sbjct: 118 VEG--PNQEFAVETREELY 134


>gi|257790767|ref|YP_003181373.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474664|gb|ACV54984.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 199

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C    CV  CPV  + + EN +   + D CI C  C   CP  A   D +  
Sbjct: 54  SCNHCDEPACVANCPVQAYTKLENGIVQQNHDLCIGCKTCIEACPYHAPCYDEQES 109


>gi|154506154|ref|ZP_02042892.1| hypothetical protein RUMGNA_03696 [Ruminococcus gnavus ATCC 29149]
 gi|153793653|gb|EDN76073.1| hypothetical protein RUMGNA_03696 [Ruminococcus gnavus ATCC 29149]
          Length = 296

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 18/58 (31%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE------CIDCGVCEPECPVDAIKP 57
           T+ CI C    C +VC           + I P E      CI CG C+  CPVDAI  
Sbjct: 247 TDKCINCG--KCKKVC----------QMNIDPVENCNHLECIRCGRCKNACPVDAISY 292



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 17  CVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPEC 50
           C  +CP+   Y   N ++I       D+CI+CG C+  C
Sbjct: 222 CKYICPLGAIYSIFNPISIFRYRLDTDKCINCGKCKKVC 260


>gi|159041061|ref|YP_001540313.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Caldivirga maquilingensis IC-167]
 gi|157919896|gb|ABW01323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
          maquilingensis IC-167]
          Length = 98

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
          + C  C+   C  +CP  C+    +   +   + C++CG C   CP +AI+
Sbjct: 33 DKCRKCEAKPCTHLCPARCYTLSPDGTVLFSHEGCLECGTCRIVCPHNAIE 83


>gi|170727846|ref|YP_001761872.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Shewanella woodyi ATCC 51908]
 gi|169813193|gb|ACA87777.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
          woodyi ATCC 51908]
          Length = 85

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I P+ C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPELCTECVGHYDKPTCISVCPIDC 58

Query: 55 IKPDTEPGLEL 65
          I PD +     
Sbjct: 59 IDPDPDHNESD 69


>gi|2828296|emb|CAA16710.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|7268716|emb|CAB78923.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
          Length = 600

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV      C     G     I  + CI CG+C  +CP +A
Sbjct: 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEA 69

Query: 55 IK 56
          I+
Sbjct: 70 IQ 71


>gi|146279224|ref|YP_001169382.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145557465|gb|ABP72077.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 188

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
            ++  ++C  C    C + CP D        +  +  D CI C  C   CP +AI    +
Sbjct: 106 AFIFEDHCTGC--MRCFKRCPTDAIIGANKQIHTVVTDACIGCNACIEACPTEAIVARVK 163

Query: 61  P 61
           P
Sbjct: 164 P 164


>gi|330823669|ref|YP_004386972.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|329309041|gb|AEB83456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 687

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 10  ILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C  + CV++C  +          + ++P  C+ CG C   CP  A+        +
Sbjct: 306 VGC--SACVDICSAEAIASDPARQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQD 360



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+CE  CP  AI
Sbjct: 556 DRCTLC--MSCVSACPASALQDNPQAPQLRFIERNCVQCGLCERTCPEGAI 604



 Score = 41.3 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + +  D C  C  C   CP  A++ + +     +++ N
Sbjct: 551 VVVDKDRCTLCMSCVSACPASALQDNPQAPQLRFIERN 588



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           + C  C    CV  CP            I    C     C   C V  AI+ D E   +
Sbjct: 183 DLCTRCN--ACVAACPEGAIGLD---YQIDMAACTGHRDCVKACAVAGAIRFDREAEPQ 236



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP  AI  D +  +
Sbjct: 180 IDLDLCTRCNACVAACPEGAIGLDYQIDM 208


>gi|328953795|ref|YP_004371129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454119|gb|AEB09948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  + C+ C   +C+  C  +       +    I P  C  CGVC   CP +AI+
Sbjct: 215 VDPDRCVGC--RECLRFCQFEAMTYSTADQKTVIDPRRCYGCGVCRSGCPEEAIQ 267


>gi|323699243|ref|ZP_08111155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323459175|gb|EGB15040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 257

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C++  CV VCP    ++  + +  +    CI C  C   CP  
Sbjct: 118 CNHCENPPCVRVCPTKATFQRPDGIVAMDYHRCIGCRYCMAGCPYG 163


>gi|323142322|ref|ZP_08077154.1| ferredoxin [Phascolarctobacterium sp. YIT 12067]
 gi|322413206|gb|EFY04093.1| ferredoxin [Phascolarctobacterium sp. YIT 12067]
          Length = 54

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          ++C+ C    C   CPV    E +    I  D C++CG C   CPV AI+
Sbjct: 8  DSCVGCG--TCAATCPVGAITEVDGKYEIGED-CVECGACAASCPVGAIE 54



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 33 LAIHPDECIDCGVCEPECPVDAI 55
          L I  D C+ CG C   CPV AI
Sbjct: 3  LKIDKDSCVGCGTCAATCPVGAI 25


>gi|307594654|ref|YP_003900971.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307549855|gb|ADN49920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 366

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 16/84 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPV-DAI----KPDT 59
           + CI C  + C E CP   F    +    +P    C  CGVC   CPV D I    + + 
Sbjct: 270 DKCIKC--SLCWEYCPDSVFDVTPDG-YFNPVLAYCKGCGVCAEVCPVPDTIIMVDEMEF 326

Query: 60  EPGLELWL------KINSEYATQW 77
           E G   ++      K N E   +W
Sbjct: 327 EDGYGKFIDEYRAWKENREAYRKW 350


>gi|260426977|ref|ZP_05780956.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45]
 gi|260421469|gb|EEX14720.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|260434168|ref|ZP_05788139.1| NADH-quinone oxidoreductase subunit i [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417996|gb|EEX11255.1| NADH-quinone oxidoreductase subunit i [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|260683957|ref|YP_003215242.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CD196]
 gi|260687617|ref|YP_003218751.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           R20291]
 gi|260210120|emb|CBA64259.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CD196]
 gi|260213634|emb|CBE05457.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           R20291]
          Length = 609

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 557 DKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 609


>gi|238916582|ref|YP_002930099.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238871942|gb|ACR71652.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 299

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + + CI C    C + C        +  +A+  D+C  CG C   CP DA
Sbjct: 174 IEDKCIGCGV--CEKACRTGAITMQDGKVAVDYDKCNYCGRCAKSCPTDA 221



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           D+CI CGVCE  C   AI          + K N
Sbjct: 176 DKCIGCGVCEKACRTGAITMQDGKVAVDYDKCN 208


>gi|298491474|ref|YP_003721651.1| XRE family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298233392|gb|ADI64528.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708]
          Length = 529

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M Y +   NC  C   +C   CP        +   I P  C +C G      C   CP +
Sbjct: 1  MPYTIPNKNCDGCD--NCRPQCPTGAIKIENDKYWIDPCLCNNCEGYYPEPQCVIACPSN 58

Query: 54 AIKP 57
          +  P
Sbjct: 59 SPIP 62


>gi|170578894|ref|XP_001894586.1| ATP-binding cassette sub-family E member 1 (Ribonuclease 4
          inhibitor) [Brugia malayi]
 gi|158598731|gb|EDP36568.1| ATP-binding cassette sub-family E member 1 (Ribonuclease 4
          inhibitor), putative [Brugia malayi]
          Length = 610

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPV-----DCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
          + C    C    C + CPV      C     N     I    CI CG+C  +CP +AIK
Sbjct: 23 DRCKPKNCG-LACKKSCPVVRMGKQCIVVESNSKMAEISETLCIGCGICVKKCPYEAIK 80


>gi|126180361|ref|YP_001048326.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus
           marisnigri JR1]
 gi|125863155|gb|ABN58344.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus
           marisnigri JR1]
          Length = 283

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    C +VC        +  +    + CI CG C   CP +AI
Sbjct: 159 ADECEGCG--ACEKVCREGAVRVTDGKVLFSEEACIGCGDCITICPGEAI 206


>gi|120405062|ref|YP_954891.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957880|gb|ABM14885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 543

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C    C+  CP D     G         D+C  C VC  +CPV AI+   EP
Sbjct: 489 NCFECDG--CLGACPEDAVIKLGVGQRYRFDYDKCTGCAVCADQCPVHAIEMFGEP 542


>gi|18978324|ref|NP_579681.1| hypothetical protein PF1952 [Pyrococcus furiosus DSM 3638]
 gi|18894154|gb|AAL82076.1| iron-sulfur protein [Pyrococcus furiosus DSM 3638]
          Length = 641

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    CV  CP       E    + ++P++CI C  C   CP+  IK   E   
Sbjct: 585 ECVGCGV--CVTKCPKRAIEIDEKRKKIIVNPEKCIHCRECMEVCPLVVIKGIEEGSQ 640


>gi|34556995|ref|NP_906810.1| IRON-sulfur protein precursor [Wolinella succinogenes DSM 1740]
 gi|34482710|emb|CAE09710.1| IRON-SULFUR PROTEIN PRECURSOR [Wolinella succinogenes]
          Length = 329

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
            V   C+ C    C ++CP     + E     I PD C+    C   CP     P  + G
Sbjct: 118 FVPRRCMHCDDAPCQKLCPFGVIGKSEQGAVSIDPDFCMGGAKCRDACPWG--IPQRQAG 175

Query: 63  LELWLKI 69
           + L++K+
Sbjct: 176 VGLYMKL 182


>gi|89070163|ref|ZP_01157492.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516]
 gi|89044280|gb|EAR50426.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|117920534|ref|YP_869726.1| formate dehydrogenase subunit beta [Shewanella sp. ANA-3]
 gi|117612866|gb|ABK48320.1| formate dehydrogenase beta subunit [Shewanella sp. ANA-3]
          Length = 300

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            C+ C    C++ C       +  N       ++CI CG C   CP +  K
Sbjct: 98  ACMHCADPACLKACSTSGAIVQHANGTVDFDSNKCIGCGYCASACPFNVPK 148


>gi|315638791|ref|ZP_07893963.1| ferredoxin [Campylobacter upsaliensis JV21]
 gi|315481009|gb|EFU71641.1| ferredoxin [Campylobacter upsaliensis JV21]
          Length = 94

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T++CI C    C++ CPV          EGE+   ++ ++C++C        C  
Sbjct: 1  MAVKITDSCIACG--SCIDECPVSAIVDDANNPEGEDRYYVYSNKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPD 58
                D CI CG C  ECPV AI  D
Sbjct: 1  MAVKITDSCIACGSCIDECPVSAIVDD 27


>gi|257452069|ref|ZP_05617368.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 3_1_5R]
 gi|257466132|ref|ZP_05630443.1| anaerobic sulfite reductase subunit C [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917290|ref|ZP_07913530.1| anaerobic sulfite reductase subunit C [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317058617|ref|ZP_07923102.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 3_1_5R]
 gi|313684293|gb|EFS21128.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 3_1_5R]
 gi|313691165|gb|EFS28000.1| anaerobic sulfite reductase subunit C [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 325

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V    E  N +  + ++CI CG C   CP+ A
Sbjct: 172 DRCVNCG--ACVKKCKRMSVGALREENNKIIRNEEKCIGCGECVLNCPMSA 220


>gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
 gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
          Length = 218

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 1   MTYVVT-ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++YV+  + C  C  T C   CP        +N   I  ++CI CG C  +C   AI 
Sbjct: 161 LSYVIDRDKCRGC--TLCARTCPAGAIVGSVKNPHVIDLNKCIKCGACMEKCKFGAIY 216


>gi|167761283|ref|ZP_02433410.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704]
 gi|167660949|gb|EDS05079.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704]
          Length = 604

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +V  ++C  C    C+    CP     +G    AI P  C  CG+C   C  +AI+    
Sbjct: 547 HVAADSCTFC--RQCIRELGCPAIVIEDG--KAAIEPSLCSGCGICAQVCKFNAIQEVDH 602

Query: 61  PG 62
             
Sbjct: 603 DE 604


>gi|270307620|ref|YP_003329678.1| ferredoxin [Dehalococcoides sp. VS]
 gi|270153512|gb|ACZ61350.1| ferredoxin [Dehalococcoides sp. VS]
          Length = 84

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M++ +T++CI C    C   CP     EGE    I P++C +C G      C   CPVD
Sbjct: 1  MSFKITDDCISCG--ACEPECPNKAISEGETIYIIDPEKCSECVGAFETPQCVEICPVD 57



 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 38 DECIDCGVCEPECPVDAI 55
          D+CI CG CEPECP  AI
Sbjct: 7  DDCISCGACEPECPNKAI 24


>gi|153953475|ref|YP_001394240.1| Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
 gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
          Length = 457

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECP-VDAIKPDT 59
          E C  C    C +VCPVD     +GE   AI  ++CI CG C   C    +I  D 
Sbjct: 7  ELCTGC--RRCADVCPVDAIGGNKGEPQ-AIDMEKCIMCGQCIQICKGYYSIYDDV 59



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           + I  + C  C  C   CPVDAI
Sbjct: 1  MINIDRELCTGCRRCADVCPVDAI 24


>gi|119595092|gb|EAW74686.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
 gi|119595094|gb|EAW74688.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
          Length = 172

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 109 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           + CI C +CE  CP  AI  + EP  +
Sbjct: 109 ERCIACKLCEAICPAQAITIEAEPRAD 135


>gi|332883767|gb|EGK04047.1| hypothetical protein HMPREF9456_01075 [Dysgonomonas mossii DSM
           22836]
          Length = 514

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 15  TDCVEVCPVDCF----YEGENFL---AIHPDECIDCGVCEPECPV---DAIKPDTEPGLE 64
             C E CP        YEG   L    I PD C+ CG CE  CPV    AI  +     +
Sbjct: 435 GACAEHCPTQAVTMIPYEGHEGLTIPFITPDICVGCGGCEYICPVRPYRAIYVEGNKEHK 494

Query: 65  LWLKINSE 72
                  E
Sbjct: 495 QRKAFKEE 502


>gi|308273606|emb|CBX30208.1| hypothetical protein N47_D30170 [uncultured Desulfobacterium sp.]
          Length = 341

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +NCILC   DC+ VC         + + I+ D C  CG+C  +CP  A
Sbjct: 76  QNCILC--ADCLSVCQQGAITI-NDCVRINRDLCDGCGLCAGQCPAKA 120


>gi|307719316|ref|YP_003874848.1| transcriptional regulator containing a ferredoxin domain
          [Spirochaeta thermophila DSM 6192]
 gi|306533041|gb|ADN02575.1| putative transcriptional regulator containing a ferredoxin domain
          [Spirochaeta thermophila DSM 6192]
          Length = 706

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLE 64
          C+ C    C+ VCPV    +G    + + P+ CI CG C   C   A  +  D E  L+
Sbjct: 15 CVSC--HRCIAVCPVKYANDGSGEVVEVRPELCIGCGECLKACTHGARRVVDDLEEALD 71


>gi|300120025|emb|CBK19579.2| subunit NuoI (NDUFS8) [Blastocystis hominis]
          Length = 204

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C  +CP                      I    CI CG C+  CPVDAI
Sbjct: 103 ERCIAC--RLCEAICPAQVINIEAEMRPDGLRRTTRYDIDLSRCIFCGYCQEACPVDAI 159


>gi|255039058|ref|YP_003089679.1| cytochrome c oxidase accessory protein CcoG [Dyadobacter fermentans
           DSM 18053]
 gi|254951814|gb|ACT96514.1| cytochrome c oxidase accessory protein CcoG [Dyadobacter fermentans
           DSM 18053]
          Length = 479

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGLE 64
           +CI C    CV VCP       G         EC++C  C   C  DAI      + GL 
Sbjct: 278 DCINC--FQCVAVCPTGIDIRNGTQM------ECVNCTACIDAC--DAIMDKVGFDRGLI 327

Query: 65  LWLKINSEYATQWPNITTK 83
            +   N+        IT +
Sbjct: 328 RYTSENAIVKKTTKVITPR 346


>gi|125577451|gb|EAZ18673.1| hypothetical protein OsJ_34194 [Oryza sativa Japonica Group]
          Length = 628

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C                    I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|33601102|ref|NP_888662.1| putative iron-sulfur binding protein [Bordetella bronchiseptica
           RB50]
 gi|33575537|emb|CAE32615.1| putative iron-sulfur binding protein [Bordetella bronchiseptica
           RB50]
          Length = 705

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V ++ C LC    CV  CP +   +      L +    C+ CG+C   CP +AI
Sbjct: 571 VDSDACTLC--MSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAI 622



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           + C    C+++C         +   + ++P+ C+ CG C   CP  A
Sbjct: 323 VGC--RACIDICSARAISSDSHHQRIVVNPNLCVGCGACTTVCPSGA 367



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D C  C  C   CP  AI  D +  
Sbjct: 200 IDLDLCTRCNACISACPDGAIGLDYQVD 227



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPG 62
           + C  C    C+  CP            +    C     CE  C V  AI     P 
Sbjct: 203 DLCTRCN--ACISACPDGAIGLD---YQVDTARCTSHRACEQACSVAGAIDFSRSPE 254



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +A+  D C  C  C   CP +A+  + +      ++ N
Sbjct: 569 VAVDSDACTLCMSCVSACPSNALLDNPQSPQLRMVEKN 606


>gi|323483796|ref|ZP_08089175.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum
          WAL-14163]
 gi|323402881|gb|EGA95200.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum
          WAL-14163]
          Length = 387

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 5  VTEN--CILCKHTDCVEVCPVDCFYEGEN---FLAIHPDE--CIDCGVCEPECPV 52
          +T+N  C  C  + C   CPV+      +   FL    D+  CI CG+C   CP 
Sbjct: 6  ITDNKKCSGC--SACYNKCPVEAIEMLPDKEGFLYPEADKGKCIGCGLCVDVCPY 58


>gi|322515130|ref|ZP_08068133.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Actinobacillus ureae ATCC 25976]
 gi|322118844|gb|EFX91034.1| formate-dependent nitrite reductase [Fe-S] protein NrfC
           [Actinobacillus ureae ATCC 25976]
          Length = 225

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|317403976|gb|EFV84438.1| nformate dehydrogenase [Achromobacter xylosoxidans C54]
          Length = 299

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIIQYNNGIVDFHEENCIGCGYCITGCPFNVPR 149


>gi|257460093|ref|ZP_05625197.1| ferredoxin [Campylobacter gracilis RM3268]
 gi|257442534|gb|EEV17673.1| ferredoxin [Campylobacter gracilis RM3268]
          Length = 94

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV+   +      GE+   ++ D+C++C        C  
Sbjct: 1  MAVKITDICISCG--SCIDECPVNAIVDDSDNPSGEDSYYVYADKCVECVGYNDEPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
                D CI CG C  ECPV+AI  D++
Sbjct: 1  MAVKITDICISCGSCIDECPVNAIVDDSD 29


>gi|153954158|ref|YP_001394923.1| hypothetical protein CKL_1533 [Clostridium kluyveri DSM 555]
 gi|219854767|ref|YP_002471889.1| hypothetical protein CKR_1424 [Clostridium kluyveri NBRC 12016]
 gi|146347039|gb|EDK33575.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219568491|dbj|BAH06475.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 376

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +++ E C  C    C   C  +   F + +  + I+ + C+ CG C   C  DAI+   
Sbjct: 190 PHIIEEQCRGC--QRCQRECANNGLFFDDVKKKMTINIENCVGCGRCLGACNFDAIEF-- 245

Query: 60  EPGLELWLKIN---SEYAT 75
                   ++N   +EYA 
Sbjct: 246 -ANWSASEELNCRMAEYAK 263


>gi|71908197|ref|YP_285784.1| respiratory nitrate reductase beta subunit [Dechloromonas aromatica
           RCB]
 gi|71847818|gb|AAZ47314.1| respiratory nitrate reductase beta subunit [Dechloromonas aromatica
           RCB]
          Length = 333

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPV 52
           C  C    C+E CP +  Y  E +  + IH D+C     C   CP 
Sbjct: 137 CNHCTKPACLEACPNEAIYKREQDGIVVIHQDKCKGAQACVQSCPY 182


>gi|20089203|ref|NP_615278.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
 gi|19914078|gb|AAM03758.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
          Length = 346

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIH--PDECIDCGVCEPECPVDAI 55
           C  C    C++VCP +  +      GE    I   PD CI CG C   CPVDAI
Sbjct: 181 CQTC--HTCIDVCPANAIFNKKAKSGERVEKITHRPDACIYCGACAVSCPVDAI 232



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-------EGENFLA----IHPDECIDCGVCEPECPVD 53
           V ENC+ C    C ++CP  C         +G   L     I  + C+ CG C   CPV+
Sbjct: 105 VNENCVHCGL--CEDICPQGCIEVTREISGDGSLKLVGKTNIDTECCVHCGWCAAVCPVN 162

Query: 54  AIKPDTE 60
           AI  +  
Sbjct: 163 AISVEKP 169



 Score = 40.9 bits (95), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL---AIHPDECIDCGVCEPECPVDAIK 56
           TE C+ C    C  VCPV+     + F        + C  C  C   CP +AI 
Sbjct: 146 TECCVHCGW--CAAVCPVNAISVEKPFAGAWTRDENVCQTCHTCIDVCPANAIF 197



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 14/62 (22%)

Query: 7  ENCILCKHTDCVEVCP--------VDCFYEG---ENFLAIHP-DECIDCGVCEPECPVDA 54
          E CI C    CV+ CP        V     G    +FL +   +EC+ CG+C   CP  A
Sbjct: 23 EICIGCG--TCVQACPKGTLAVGAVGVIARGLLDADFLEMTKKEECLVCGICARVCPTGA 80

Query: 55 IK 56
          ++
Sbjct: 81 LE 82



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 30/76 (39%)

Query: 7   ENCILCKHTDCVEVCPVDCF------------YEGE----------------NFLAIHPD 38
           + CI C    C   CPVD               +G                   L     
Sbjct: 215 DACIYCG--ACAVSCPVDAIDVRKTAILPEMEKKGPLEKKLLDAPVPEALLRTRLETDEA 272

Query: 39  ECIDCGVCEPECPVDA 54
            C+ CG C   CPV+A
Sbjct: 273 ACLGCGNCVIVCPVNA 288



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 30 ENFLAIHPDECIDCGVCEPECP 51
          +  L   P+ CI CG C   CP
Sbjct: 15 DKQLVYKPEICIGCGTCVQACP 36


>gi|325475391|gb|EGC78574.1| iron-sulfur cluster-binding protein [Treponema denticola F0402]
          Length = 303

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
           ++ +NC  CK   C+ VCPV+ F   +  ++I +   CI CG C   C  +AI
Sbjct: 212 IIHKNCSACK--KCISVCPVNNFIFTDGRVSIKNQKNCILCGECFYNCGCNAI 262


>gi|323964173|gb|EGB59657.1| nitrate reductase [Escherichia coli M863]
          Length = 1760

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9    CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 1429 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRGWRLCISGCPYKKIYFNWKSG 1484


>gi|241663771|ref|YP_002982131.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|240865798|gb|ACS63459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 719

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 10  ILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C    CV+VC          +G   + + P+ C+ CG C   CP  AI     
Sbjct: 334 VGCN--ACVDVCSASAIASQWKDGRGSVRVTPNLCVGCGACTTACPTGAITYAYP 386



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V  E C LC    CV  CP     +      LA+    C+ CG+CE  CP  AI
Sbjct: 586 VNRERCTLC--MACVGACPSQALRDQAERPVLAMIERNCVQCGLCETTCPESAI 637



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           + C  C    C++VCP       +    I  D C D   C   C
Sbjct: 209 DRCTRCN--ACIDVCPEGAI---DALYQIDLDACRDHRACVKAC 247



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 206 IDLDRCTRCNACIDVCPEGAI 226


>gi|255307406|ref|ZP_05351577.1| indolepyruvate oxidoreductase subunit [Clostridium difficile ATCC
           43255]
          Length = 633

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI CK   C++  CP   F +      I  ++C+ CGVC   CP  AI  + +
Sbjct: 581 DKCIGCKL--CLKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAIVKEEK 633


>gi|167908424|ref|ZP_02495629.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei NCTC
           13177]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|163786539|ref|ZP_02180987.1| iron-sulfur cluster binding protein [Flavobacteriales bacterium
           ALC-1]
 gi|159878399|gb|EDP72455.1| iron-sulfur cluster binding protein [Flavobacteriales bacterium
           ALC-1]
          Length = 308

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 30/103 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI----------------------- 41
           VT++C  C  T C++ CP +   E      +   +CI                       
Sbjct: 182 VTDHCGTC--TACIDACPTEAITE---PYVVDGSKCISYFTIELKENIPTEFKGQFDEWM 236

Query: 42  -DCGVCEPECPVDAI-KPDTEPGLELWLKINSEYATQWPNITT 82
             C VC+  CP +   KP  EP    + ++ +     W  IT 
Sbjct: 237 FGCDVCQDVCPWNRFSKPHKEPLFNPYPELLNMSKKDWEEITE 279


>gi|126740388|ref|ZP_01756076.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6]
 gi|126718524|gb|EBA15238.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6]
          Length = 164

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|91203539|emb|CAJ71192.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 304

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CV  CP  C     E F     D C  C +C  ECP  AI
Sbjct: 248 DACTKC--MICVNRCPDSCISVNKEGFPFADYDNCKGCMICAEECPTKAI 295


>gi|150388601|ref|YP_001318650.1| electron transfer flavoprotein, alpha subunit-like protein
          [Alkaliphilus metalliredigens QYMF]
 gi|149948463|gb|ABR46991.1| Electron transfer flavoprotein, alpha subunit-like protein
          [Alkaliphilus metalliredigens QYMF]
          Length = 392

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E C  C    C++ C  D  ++  N   ++ + C  CG+C   CP +AI  + E
Sbjct: 9  EKCTGCGL--CIKSCATDALHKENNKAMVN-ENCTLCGICIDSCPFEAISIEKE 59


>gi|153947862|ref|YP_001402637.1| iron-sulfur cluster-binding protein [Yersinia pseudotuberculosis IP
           31758]
 gi|170026044|ref|YP_001722549.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Yersinia pseudotuberculosis YPIII]
 gi|152959357|gb|ABS46818.1| iron-sulfur cluster-binding protein [Yersinia pseudotuberculosis IP
           31758]
 gi|169752578|gb|ACA70096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           pseudotuberculosis YPIII]
          Length = 185

 Score = 48.6 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP      G + + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCENACPNGAIITGSHGVQLLASRCIGCKTCMLVCPFGA 103


>gi|332704784|ref|ZP_08424872.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554933|gb|EGJ51977.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 263

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 8   NCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPV 52
            C+ C++  CV VCPV       EG     I+P  CI C  C   CP 
Sbjct: 74  PCMQCENPSCVPVCPVVATTKDEEGGIVSQIYP-RCIGCRYCMAACPY 120



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 32 FLAIHPDECIDCGVCEPECPVD---AIKPD 58
           + I  D+C  CG C   C V+   A  PD
Sbjct: 12 GMVIDLDKCTGCGACMVACQVENNIAPTPD 41


>gi|293396628|ref|ZP_06640904.1| respiratory nitrate reductase, beta subunit [Serratia odorifera DSM
           4582]
 gi|291420892|gb|EFE94145.1| respiratory nitrate reductase, beta subunit [Serratia odorifera DSM
           4582]
          Length = 512

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVSSCPSGAIYKREEDGIVLIDEDKCRGWRMCVSGCPYKKIYFNWKSG 238


>gi|262278404|ref|ZP_06056189.1| ferredoxin [Acinetobacter calcoaceticus RUH2202]
 gi|262258755|gb|EEY77488.1| ferredoxin [Acinetobacter calcoaceticus RUH2202]
          Length = 83

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T  CI C    C+  CP    +EG     I P  C +C        C+  CP+D 
Sbjct: 1  MALLITSECINCD--MCLPECPNIAIFEGSKVYEIDPLRCTECVGFYDAPTCKAVCPIDC 58

Query: 55 IKPD 58
          IK D
Sbjct: 59 IKQD 62


>gi|257064487|ref|YP_003144159.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792140|gb|ACV22810.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 206

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           NC  C +  C+ VCP     + E+ +  +  + CI C  C   CP D ++      LE +
Sbjct: 65  NCQHCANPSCLTVCPTGATQQREDGIVWVDTELCIGCDSCINACPYD-VRRHLADDLEFY 123

Query: 67  LK 68
            +
Sbjct: 124 TE 125


>gi|268679340|ref|YP_003303771.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617371|gb|ACZ11736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 223

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C    CV VCP +  Y  E    + ++ ++CI C  C   CP D   I  +T+   
Sbjct: 93  SCQQCVDAPCVNVCPTNACYRDEKTGIVTMNTNDCIACKYCIVACPYDVRFINHETKSAE 152

Query: 64  ELWLKINSEYAT 75
                 N+ +A 
Sbjct: 153 NCNFCFNTNFAK 164


>gi|217968829|ref|YP_002354063.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506156|gb|ACK53167.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 236

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDA 54
           C  C    CV  CPV+  ++ E+   +    + CI C  C   CP +A
Sbjct: 75  CNHCDDPPCVRNCPVEATFKVEDGGFVLQRYERCIGCRSCMAACPYNA 122


>gi|254512016|ref|ZP_05124083.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535727|gb|EEE38715.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11]
          Length = 164

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|254468272|ref|ZP_05081678.1| electron transport complex protein [beta proteobacterium KB13]
 gi|207087082|gb|EDZ64365.1| electron transport complex protein [beta proteobacterium KB13]
          Length = 183

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI----KPDTEPGL 63
           CI C  T C++ CPVD        +  I   EC  C +C P CPVD I     P+T    
Sbjct: 113 CIGC--TLCIQACPVDAIIGAAKQMHTIVEKECTGCELCLPPCPVDCIDMVEIPETTDNW 170

Query: 64  EL 65
           + 
Sbjct: 171 KW 172



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C +C   CPVDAI
Sbjct: 108 IDESTCIGCTLCIQACPVDAI 128


>gi|206901124|ref|YP_002250290.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
 gi|206740227|gb|ACI19285.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
          Length = 539

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 10 ILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          I C++   C+  CPV           +  DECI CGVC   CP  A
Sbjct: 7  ISCQYCYKCLRNCPVKSIMFNRGKSYVIDDECILCGVCIEVCPQRA 52



 Score = 33.6 bits (76), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)

Query: 2  TYVVTENCILCKHTDCVEVCP 22
          +YV+ + CILC    C+EVCP
Sbjct: 31 SYVIDDECILCGV--CIEVCP 49


>gi|167758024|ref|ZP_02430151.1| hypothetical protein CLOSCI_00361 [Clostridium scindens ATCC
          35704]
 gi|167664456|gb|EDS08586.1| hypothetical protein CLOSCI_00361 [Clostridium scindens ATCC
          35704]
          Length = 141

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAI 55
          M+Y +TE CI C  T C ++CPV       +    I+   C++CGVC   C   AI
Sbjct: 1  MSYFITEKCIGC--TLCKKLCPVGAVEGTLKERHRINEKRCVECGVCGRACGQGAI 54



 Score = 34.4 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 37  PDECIDCGVCEPECPVDAIK 56
           P+ C+ CG+CE  CP+ AI 
Sbjct: 115 PERCVGCGICESACPLHAIY 134


>gi|319425371|gb|ADV53445.1| cytochrome c oxidase accessory protein CcoG [Shewanella
           putrefaciens 200]
          Length = 491

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +  L  ++
Sbjct: 290 DCVDC--HLCVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKQNLIGYM 342

Query: 68  KIN 70
             N
Sbjct: 343 SEN 345


>gi|150398827|ref|YP_001322594.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011530|gb|ABR53982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 654

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 20/74 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP+    E                        I  + CIDCG+C  
Sbjct: 244 EKCTGCG--SCEEVCPITVPNEFDMGIGMRKAIYKPFPQAVPAKYTIDKESCIDCGLCAK 301

Query: 49  ECPVDAIKPDTEPG 62
            C   AI  + +P 
Sbjct: 302 VCGPQAINYNQKPE 315



 Score = 40.1 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 4   VVT---ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VVT   + C  C    CV+ CP         +G+  L +    C  CG C   CP  A++
Sbjct: 576 VVTLDEDVCGACG--ICVQQCPYGAPRFVEKDGKQALEVLSALCKGCGTCAGGCPSGALE 633

Query: 57  PDTEPGLELWLKI 69
                  +++ +I
Sbjct: 634 QSHFKTNQIYGQI 646


>gi|89053678|ref|YP_509129.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1]
 gi|115502532|sp|Q28T58|NUOI_JANSC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88863227|gb|ABD54104.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1]
          Length = 164

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|91774988|ref|YP_544744.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus flagellatus
           KT]
 gi|91708975|gb|ABE48903.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
           flagellatus KT]
          Length = 478

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 16/64 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C +  CV+VCP                +CI CG+C   C         P   I+ D
Sbjct: 272 DCIDCGY--CVQVCPTGIDIRDGLQY-----QCISCGLCIDACNTIMDSIGSPRGLIRYD 324

Query: 59  TEPG 62
           +E  
Sbjct: 325 SEQN 328


>gi|329889339|ref|ZP_08267682.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
 gi|328844640|gb|EGF94204.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG+C+  CPVDAI
Sbjct: 50  ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMVKCIYCGLCQEACPVDAI 106


>gi|317152898|ref|YP_004120946.1| iron-sulfur-binding protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943149|gb|ADU62200.1| iron-sulfur binding protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 149

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ CK  +CV  CP    Y+ E+ L  ++ D C  C  C   CP D
Sbjct: 58  QPCMHCKKPECVPACPTGAMYQREDGLVLVNMDLCDGCQSCIAACPWD 105


>gi|237728885|ref|ZP_04559366.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909507|gb|EEH95425.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 157

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 17/53 (32%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            +     C  C+   C  VCP          + +    CI C  C   CP  A
Sbjct: 51  AFTTAVACHQCEDAPCANVCPTHAIRREHGHIFVEQARCIGCKSCMLACPFGA 103


>gi|222445295|ref|ZP_03607810.1| hypothetical protein METSMIALI_00923 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350144|ref|ZP_05975561.1| polyferredoxin protein MvhB [Methanobrevibacter smithii DSM 2374]
 gi|222434860|gb|EEE42025.1| hypothetical protein METSMIALI_00923 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860930|gb|EFC93228.1| polyferredoxin protein MvhB [Methanobrevibacter smithii DSM 2374]
          Length = 413

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           +C+ C    CV+ CPV      E    ++I  D CI CG+C   CP +A+    +   + 
Sbjct: 145 DCVGCG--TCVDPCPVSAITLDEIGGTISIADDVCIKCGLCSQTCPWNAVFIAEKKPAKR 202

Query: 66  WLKINSE 72
              IN+ 
Sbjct: 203 AKTINAF 209



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    CVE CP D       N   + PD C  C +C   CP DA+  D E
Sbjct: 216 CIGCN--TCVEACPGDFIKANSANLSVLIPDACAACQLCVKLCPTDALSMDVE 266



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C+E CP +  +   N        C  CG C   CP  A+  
Sbjct: 366 CNECGD--CIEACPYNMLHATGNEKFPIMGFCTLCGQCIDACPKHALYD 412



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
           +  + D CI CG CE  CP  AI
Sbjct: 1  MIVFNEDGCIRCGACEGTCPTSAI 24



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 11/59 (18%)

Query: 9  CILCKH-TDCVEVCPVDC-------FYEGEN---FLAIHPDECIDCGVCEPECPVDAIK 56
          C  C     C +VCP            EG      L  +   C  CG CE  CP D IK
Sbjct: 34 CDTCGGEPKCADVCPEGALKVETYSIAEGAEEQIRLVFNSTLCNSCGKCEEACPQDTIK 92



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG----------ENFLAIHPDECIDCGVCEPECPVDA 54
           + + C  C    CV++CP D                  L    ++C   G C  +CP +A
Sbjct: 242 IPDACAAC--QLCVKLCPTDALSMDVEWAEGVPADTEGLGYDAEKCDFVGACANKCPTEA 299

Query: 55  IKPDTEPGL 63
           I+  T+ G+
Sbjct: 300 IRVVTKTGM 308



 Score = 34.0 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C E CP D      N L      C+ C  C   CPVD I
Sbjct: 76  CNSCG--KCEEACPQDTIKLTGNDLMEVEGFCVMCQKCVDICPVDVI 120


>gi|218884327|ref|YP_002428709.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765943|gb|ACL11342.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 166

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +  +C+ C    C++VCP      + E  + +   +CI C  C   CP    + D
Sbjct: 51  IPVSCMHCAKAPCIDVCPTGAMTRDSEGAVYVVASKCIGCMACLYACPFGIPELD 105


>gi|154497736|ref|ZP_02036114.1| hypothetical protein BACCAP_01712 [Bacteroides capillosus ATCC
           29799]
 gi|150273234|gb|EDN00379.1| hypothetical protein BACCAP_01712 [Bacteroides capillosus ATCC
           29799]
          Length = 376

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK-PDT 59
           VV E+ C  C    C + C  D  +    +    I  D C+ CG C   C  DAI  P++
Sbjct: 191 VVAEDKCRKC--HACAKSCGQDAIFFDGTDGKARIDHDRCVGCGRCLGACNFDAISNPES 248

Query: 60  EPGLELWLKINSEYAT 75
                L  K+ +EYA 
Sbjct: 249 NTNTILDYKM-AEYAK 263


>gi|116695395|ref|YP_840971.1| formate dehydrogenase beta subunit [Ralstonia eutropha H16]
 gi|113529894|emb|CAJ96241.1| formate dehydrogenase beta subunit [Ralstonia eutropha H16]
          Length = 296

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +     D CI CG C   CP D  +
Sbjct: 97  DGCMHCEDPGCLKACPAPGAIVQYANGIVDFQSDLCIGCGYCVAGCPFDVPR 148



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           ++ CI C +  CV  CP D     + +N       +C  C           C   CP  A
Sbjct: 129 SDLCIGCGY--CVAGCPFDVPRISKLDNKAY----KCTLCSDRVSVGQEPACVKTCPTGA 182

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 183 IAFGSKAEMQ 192


>gi|57642012|ref|YP_184490.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160336|dbj|BAD86266.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 166

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDT 59
          NC  C+   C+EVCP +  Y   +   +  P +CI C +C   CP    + D+
Sbjct: 47 NCRHCEKAPCLEVCPTNALYRDGDGAVLLAPQKCIGCLMCGIVCPFGIPELDS 99


>gi|16082454|ref|NP_394943.1| putative ATPase RIL [Thermoplasma acidophilum DSM 1728]
 gi|10640832|emb|CAC12610.1| probable RNase L inhibitor [Thermoplasma acidophilum]
          Length = 589

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 16/73 (21%)

Query: 11 LCKHTDCVEVCPVDCFYEGENFLAIH---PD--------ECIDCGVCEPECPVDAIKPDT 59
           C    C   C   C     + +AI    PD         CI CG+C   CP  AIK  T
Sbjct: 10 KCHPKKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAIKIVT 69

Query: 60 EPGLELWLKINSE 72
           P      ++N E
Sbjct: 70 LPD-----ELNKE 77


>gi|148266249|ref|YP_001232955.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
 gi|146399749|gb|ABQ28382.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
          Length = 593

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV + C+ C    C++ CP +    E      +  ++C  C  C   C   AI+
Sbjct: 542 VVEDKCVKCG--ACLKACPSNAIIWEKGKVAYLDKEKCTKCKSCYDACRFMAIE 593



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP +C  E   +  +  D+C+ CG C   CP +AI  +
Sbjct: 529 CPSNCCKELLLWQVV-EDKCVKCGACLKACPSNAIIWE 565


>gi|83859989|ref|ZP_00953509.1| ferredoxin, putative [Oceanicaulis alexandrii HTCC2633]
 gi|83852348|gb|EAP90202.1| ferredoxin, putative [Oceanicaulis alexandrii HTCC2633]
          Length = 497

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV  CP+       + L     ECI+C +C   C
Sbjct: 283 DCIDCK--ACVAACPMGIDIRDGDQL-----ECINCALCIDAC 318



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC  C   CP+ 
Sbjct: 284 CIDCKACVAACPMG 297


>gi|310827343|ref|YP_003959700.1| hypothetical protein ELI_1751 [Eubacterium limosum KIST612]
 gi|308739077|gb|ADO36737.1| hypothetical protein ELI_1751 [Eubacterium limosum KIST612]
          Length = 151

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
             +   C+ C+   C++VCPV      EN    +   +CI C +C   CP+  I
Sbjct: 41 AVTIPVMCMQCEEPACMKVCPVGAISRNENGAFVMDEAKCIVCKMCMNACPLGNI 95


>gi|282855455|ref|ZP_06264776.1| conserved domain protein [Pyramidobacter piscolens W5455]
 gi|282586751|gb|EFB91998.1| conserved domain protein [Pyramidobacter piscolens W5455]
          Length = 56

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          V  + C+ C    C   CPV+     +    +   +C++CG C   CPV+AI
Sbjct: 5  VNVDTCVGCG--ACEGACPVEAITLEDGKSKVDESKCVECGSCVSACPVEAI 54



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDT 59
          ++ D C+ CG CE  CPV+AI  + 
Sbjct: 5  VNVDTCVGCGACEGACPVEAITLED 29


>gi|300022451|ref|YP_003755062.1| nitrate reductase subunit beta [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524272|gb|ADJ22741.1| nitrate reductase, beta subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 508

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C +  CV VCP    Y  E +  + I  D+C    +C   CP   I  
Sbjct: 183 CEHCLNPACVAVCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYY 233


>gi|119872287|ref|YP_930294.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673695|gb|ABL87951.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum islandicum DSM 4184]
          Length = 592

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           E C  C    C  +       +  +    + P  C+ CGVC   CP +A     E   E+
Sbjct: 529 EKCKSCGL--CYNLLKCSAISKRPDGKAYVDPALCVGCGVCAEVCPFNA--FKLEGRKEI 584

Query: 66  WLKI 69
           WL+I
Sbjct: 585 WLEI 588


>gi|127513713|ref|YP_001094910.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella loihica PV-4]
 gi|126639008|gb|ABO24651.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          loihica PV-4]
          Length = 85

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP      GE    I P+ C +C        C   CP+D 
Sbjct: 1  MALLIDDSCINCD--MCEPECPNQAITMGEEIYEIDPNLCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPD 58
          I PD
Sbjct: 59 IDPD 62


>gi|22124514|ref|NP_667937.1| 4Fe-4S ferrodoxin [Yersinia pestis KIM 10]
 gi|45440351|ref|NP_991890.1| 4Fe-4S ferrodoxin [Yersinia pestis biovar Microtus str. 91001]
 gi|51594749|ref|YP_068940.1| 4Fe-4S ferrodoxin [Yersinia pseudotuberculosis IP 32953]
 gi|108809929|ref|YP_653845.1| 4Fe-4S ferrodoxin [Yersinia pestis Antiqua]
 gi|108813487|ref|YP_649254.1| 4Fe-4S ferrodoxin [Yersinia pestis Nepal516]
 gi|145600877|ref|YP_001164953.1| 4Fe-4S ferrodoxin [Yersinia pestis Pestoides F]
 gi|150260613|ref|ZP_01917341.1| 4Fe-4S ferrodoxin [Yersinia pestis CA88-4125]
 gi|162419138|ref|YP_001605307.1| 4Fe-4S ferrodoxin [Yersinia pestis Angola]
 gi|165926721|ref|ZP_02222553.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936565|ref|ZP_02225133.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011874|ref|ZP_02232772.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166214051|ref|ZP_02240086.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400673|ref|ZP_02306182.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418786|ref|ZP_02310539.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423198|ref|ZP_02314951.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469246|ref|ZP_02333950.1| iron-sulfur cluster-binding protein [Yersinia pestis FV-1]
 gi|186893756|ref|YP_001870868.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|218927546|ref|YP_002345421.1| 4Fe-4S ferrodoxin [Yersinia pestis CO92]
 gi|229836601|ref|ZP_04456767.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Pestoides A]
 gi|229840210|ref|ZP_04460369.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229842291|ref|ZP_04462446.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229903971|ref|ZP_04519084.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Nepal516]
 gi|270489043|ref|ZP_06206117.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
 gi|294502455|ref|YP_003566517.1| 4Fe-4S ferrodoxin [Yersinia pestis Z176003]
 gi|21957309|gb|AAM84188.1|AE013662_2 electron transport protein [Yersinia pestis KIM 10]
 gi|45435207|gb|AAS60767.1| 4Fe-4S ferrodoxin [Yersinia pestis biovar Microtus str. 91001]
 gi|51588031|emb|CAH19637.1| 4Fe-4S ferrodoxin [Yersinia pseudotuberculosis IP 32953]
 gi|108777135|gb|ABG19654.1| 4Fe-4S ferrodoxin [Yersinia pestis Nepal516]
 gi|108781842|gb|ABG15900.1| 4Fe-4S ferrodoxin [Yersinia pestis Antiqua]
 gi|115346157|emb|CAL19025.1| 4Fe-4S ferrodoxin [Yersinia pestis CO92]
 gi|145212573|gb|ABP41980.1| 4Fe-4S ferrodoxin [Yersinia pestis Pestoides F]
 gi|149290021|gb|EDM40098.1| 4Fe-4S ferrodoxin [Yersinia pestis CA88-4125]
 gi|162351953|gb|ABX85901.1| iron-sulfur cluster-binding protein [Yersinia pestis Angola]
 gi|165915681|gb|EDR34290.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921344|gb|EDR38568.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989233|gb|EDR41534.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204846|gb|EDR49326.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962780|gb|EDR58801.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050041|gb|EDR61449.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057368|gb|EDR67114.1| iron-sulfur cluster-binding protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186696782|gb|ACC87411.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679741|gb|EEO75844.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Nepal516]
 gi|229690601|gb|EEO82655.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696576|gb|EEO86623.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706285|gb|EEO92293.1| formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit [Yersinia
           pestis Pestoides A]
 gi|262360486|gb|ACY57207.1| 4Fe-4S ferrodoxin [Yersinia pestis D106004]
 gi|262364432|gb|ACY60989.1| 4Fe-4S ferrodoxin [Yersinia pestis D182038]
 gi|270337547|gb|EFA48324.1| 4Fe-4S binding domain protein [Yersinia pestis KIM D27]
 gi|294352914|gb|ADE63255.1| 4Fe-4S ferrodoxin [Yersinia pestis Z176003]
 gi|320013792|gb|ADV97363.1| anaerobic dimethyl sulfoxide reductase chain B [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 185

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP      G + + +    CI C  C   CP  A
Sbjct: 58  CHQCEDAPCENACPNGAIITGSHGVQLLASRCIGCKTCMLVCPFGA 103


>gi|313672286|ref|YP_004050397.1| NADH-quinone oxidoreductase, chain i [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939042|gb|ADR18234.1| NADH-quinone oxidoreductase, chain I [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 145

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C +VCP +C +     G N         I  D CI CG CE  CP DAI 
Sbjct: 60  CVGCYL--CQKVCPSECIHIETDAGPNGERLIRKFEIELDRCIYCGFCEEACPKDAIH 115


>gi|295107498|emb|CBL05041.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
          pamelaeae 7-10-1-b]
          Length = 187

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          C  C +  C +VCPV   +  E    +    D+CI C +C   CP  A
Sbjct: 46 CQHCANPACAKVCPVGATWRDEKTGIVVQDVDKCIGCRMCMGACPYSA 93


>gi|288926953|ref|ZP_06420850.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella
           buccae D17]
 gi|288336273|gb|EFC74657.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella
           buccae D17]
          Length = 306

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C + C  D     +N   I  ++C  C  C   CP  AI
Sbjct: 223 ACIGCG--KCEKECKFDAITITDNLSYIDFNKCRLCTKCVDVCPTGAI 268



 Score = 37.1 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 18  VEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           V  C  D  +         +  D+C  CG C   CP   I+
Sbjct: 152 VAACNFDAIHMNPETGLPEVDEDKCTACGACVKACPRHIIE 192


>gi|322419902|ref|YP_004199125.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320126289|gb|ADW13849.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter sp. M18]
          Length = 255

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 8   NCILCKHTDCVEVCPV---------DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C +  CV  CPV         +    G   + ++  +CI CG C P CP  A
Sbjct: 79  PCMQCDNPPCVAACPVKGADGATWKETKGIGNGIVLVNYAKCIGCGKCVPACPYSA 134


>gi|218551125|ref|YP_002384916.1| formate dehydrogenase-O, Fe-S subunit [Escherichia fergusonii ATCC
           35469]
 gi|218358666|emb|CAQ91319.1| formate dehydrogenase-O, Fe-S subunit [Escherichia fergusonii ATCC
           35469]
          Length = 300

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D I         
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCVAGCPFD-IPRLNPEDNR 156

Query: 65  LW 66
           ++
Sbjct: 157 VY 158


>gi|167899013|ref|ZP_02486414.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           7894]
          Length = 304

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|315925707|ref|ZP_07921916.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315621025|gb|EFV00997.1| pyruvate formate-lyase activating enzyme [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 251

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +CI C    C++VCP       EN   +   +C  CG C   CP  A
Sbjct: 3  SCIHCG--SCLKVCPEPGALSPENPAFVDYQKCTGCGECVAVCPAGA 47


>gi|313672136|ref|YP_004050247.1| ferredoxin-dependent glutamate synthase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938892|gb|ADR18084.1| ferredoxin-dependent glutamate synthase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 547

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 27/83 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG---ENFLA---IHPD-------------------ECI 41
           + C +C    CV  CP      G      +    I+P+                    C 
Sbjct: 23  DRCTMCG--KCVASCPFKAIVPGVEKRRKVVSEDINPNPKVYFQTVPVIKQVVDVNNFCR 80

Query: 42  DCGVCEPECPVDAIKPDTEPGLE 64
            CG+CE  CP DAI+P   P   
Sbjct: 81  GCGICEKVCPNDAIRPVRNPDHR 103


>gi|269102486|ref|ZP_06155183.1| anaerobic sulfite reductase subunit C [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162384|gb|EEZ40880.1| anaerobic sulfite reductase subunit C [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 336

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 3   YVVTENCILCKHTDCVEVC---PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +   E CI C    CV  C    V C             +CI CG C   CP  A     
Sbjct: 174 HFNAERCIGCG--ACVRACEHHAVGCLSLKNGKAIKEESKCIGCGECVLACPTLA--WQR 229

Query: 60  EPGLELWLKINSEYATQWP 78
           +P     +K+    + + P
Sbjct: 230 DPKQLYMVKLGGRTSKKTP 248



 Score = 36.7 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 8/38 (21%)

Query: 21  CPVDC--------FYEGENFLAIHPDECIDCGVCEPEC 50
           CP DC           G   +  + + CI CG C   C
Sbjct: 153 CPNDCAKANMADFGVLGVAKMHFNAERCIGCGACVRAC 190


>gi|260588677|ref|ZP_05854590.1| tRNA (guanine-N(1)-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|331081974|ref|ZP_08331102.1| hypothetical protein HMPREF0992_00026 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541152|gb|EEX21721.1| tRNA (guanine-N(1)-)-methyltransferase [Blautia hansenii DSM 20583]
 gi|330405569|gb|EGG85099.1| hypothetical protein HMPREF0992_00026 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 478

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + E C  C    CV+ CPV      ++ L I   +CI C  C   C   A   D
Sbjct: 407 FIKERCTGC--QVCVQKCPVYAIS--KDTLEIDERKCISCMRCALLCKKGARAYD 457


>gi|212218221|ref|YP_002305008.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuK_Q154]
 gi|212012483|gb|ACJ19863.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuK_Q154]
          Length = 168

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP        G              I   +CI+CG CE  CPVDAI
Sbjct: 66  ERCIACKL--CEAFCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAI 123


>gi|297620127|ref|YP_003708232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379104|gb|ADI37259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 253

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 3   YVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +VV T+ CI C    C ++CPV      +  + I  ++C+ CG+CE  CPV AI
Sbjct: 197 FVVETDKCIDC--MVCHDLCPVSAITY-DGKIIIDNEKCVHCGICEKNCPVSAI 247



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C+ C  T C +VCPV+             E+   +  D+CIDC VC   CPV AI  D
Sbjct: 165 DLCMGC--TACEKVCPVNAIKVDYELSDIKFEDEFVVETDKCIDCMVCHDLCPVSAITYD 222



 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          Y+  + C+ C+   C+E CPVD   +    N   I P++CI C +C   CPV AI+
Sbjct: 43 YIQPKKCVHCEL--CLEACPVDAIEKPNLKNSAKIIPEKCIKCEICAKTCPVGAIE 96



 Score = 43.2 bits (101), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CI C    C   C       E +  + I+ D C+ C  CE  CPV+AIK D E     
Sbjct: 135 DKCIKC--AICERFCAPKAIKVEKKVSIDINEDLCMGCTACEKVCPVNAIKVDYELSDIK 192

Query: 66  W 66
           +
Sbjct: 193 F 193



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
          L I P +C+ C +C   CPVDAI+
Sbjct: 42 LYIQPKKCVHCELCLEACPVDAIE 65


>gi|159905431|ref|YP_001549093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886924|gb|ABX01861.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 481

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+LC+   C++ CP D     E   F +I  +ECI CG C   CP DAI
Sbjct: 321 CVLCEL--CIKECPEDAISIKERSKFTSIDKEECIACGTCSMVCPNDAI 367



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 7  ENCILCKHTD---CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C  CK+ +   C+EVCP +     +         CI CG C  ECP  AIK
Sbjct: 13 EECENCKNKEIPECMEVCPTNAIKMIDGKAF----SCITCGTCAKECPTGAIK 61



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 10/63 (15%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--------CIDCGVCEPECPVDAIK 56
           VTENCILC   +C+  CP D     E  +    ++        CI+CG+C  +CP +A++
Sbjct: 225 VTENCILCG--NCITKCPKDVLEISEFKVVKTKEDVKAKPEKHCINCGLCVDKCPSNALR 282

Query: 57  PDT 59
            D 
Sbjct: 283 FDE 285



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
          +CI C    C + CP     + E     ++   C  CG+C+  CP+D I+
Sbjct: 44 SCITCG--TCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNVCPIDIIE 91



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    CV+ CP +     E  +   P  C  C  C  ECP
Sbjct: 266 CINCGL--CVDKCPSNALRFDEGKILYDPKSCTLCNTCVKECP 306



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)

Query: 2   TYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +Y+ T+N  C+ C    C  +CP D   +GE    I+ ++C  C  C   CP  AI+
Sbjct: 421 SYIRTDNDYCVKCGL--CNIICPNDAIDKGE----INTEKCEYCSACVNICPTRAIR 471



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C+ C    CV +CP D   E E       D C  C +C   CPVD I+ 
Sbjct: 179 EKCVECG--KCVYLCPKDTIIESETI-----DGCTRCNICNDVCPVDTIEY 222



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDA 54
           YV  + C  C    C  VCP+D     E+    A     C+ CG+C  ECP  A
Sbjct: 69  YVNRKLCTGCG--ICKNVCPIDIIEIREDSTGKAYPTGMCVMCGLCTTECPYGA 120



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
           ++I P++C++CG C   CP D I
Sbjct: 174 ISIDPEKCVECGKCVYLCPKDTI 196


>gi|94967507|ref|YP_589555.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549557|gb|ABF39481.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 455

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C   CP        G     + P +CI  G C   CPV AI
Sbjct: 69  CIGCG--TCSTACPEGDVLGIIGGKAAIVKPYKCIGHGFCAEACPVGAI 115



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 25 CFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
           F EG       I    CI CG C   CP  
Sbjct: 52 MFSEGPQAQHPLIDESRCIGCGTCSTACPEG 82


>gi|52425872|ref|YP_089009.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307924|gb|AAU38424.1| HybA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + E  +  ++ D C+ C  C   CP 
Sbjct: 94  QSCQHCTNAPCVAVCPTGASFIDPETGIVDVNKDLCVGCQYCIAVCPY 141


>gi|116753878|ref|YP_842996.1| cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
 gi|116665329|gb|ABK14356.1| Cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
          Length = 277

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C EVC  +          + P+ C  CG C   CP  AI
Sbjct: 67  CVHCG--RCAEVCAFNAIAVIPTRAVVFPELCHGCGACMISCPEKAI 111


>gi|83951754|ref|ZP_00960486.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM]
 gi|83836760|gb|EAP76057.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM]
          Length = 164

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|332796474|ref|YP_004457974.1| ABC transporter-like protein [Acidianus hospitalis W1]
 gi|332694209|gb|AEE93676.1| ABC transporter related protein [Acidianus hospitalis W1]
          Length = 600

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 17 CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C+  CP++          E       I+ + CI CG+C  +CP +AI     P 
Sbjct: 20 CIRFCPINRSGSKAIELSEIVKGKPVIYEETCIGCGICVKKCPYEAISIVNLPD 73


>gi|315609147|ref|ZP_07884116.1| electron transport complex protein RnfB [Prevotella buccae ATCC
           33574]
 gi|315249217|gb|EFU29237.1| electron transport complex protein RnfB [Prevotella buccae ATCC
           33574]
          Length = 306

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C + C  D     +N   I  ++C  C  C   CP  AI
Sbjct: 223 ACIGCG--KCEKECKFDAITITDNLSYIDFNKCRLCTKCVDVCPTGAI 268



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 18  VEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           V  C  D  +         +  D+C  CG C   CP   I+
Sbjct: 152 VAACNFDAIHMNPETGLPEVDEDKCTACGACAKACPRHIIE 192


>gi|319763994|ref|YP_004127931.1| cytochrome c oxidase accessory protein ccog [Alicycliphilus
           denitrificans BC]
 gi|330823742|ref|YP_004387045.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
 gi|317118555|gb|ADV01044.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans BC]
 gi|329309114|gb|AEB83529.1| cytochrome c oxidase accessory protein CcoG [Alicycliphilus
           denitrificans K601]
          Length = 480

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP                ECI CG+C   C
Sbjct: 274 DCIDC--TLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDAC 309


>gi|288931037|ref|YP_003435097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893285|gb|ADC64822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 354

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++E CI C   +CV  CPVD         AI+ D+CI C +CE  CP + I+
Sbjct: 114 ISEGCIEC--RNCVMFCPVDAVRIERGSPAINEDKCIYCEICEYVCPKNVIE 163



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ENC+ C    C  VCP          NF  I  D C++CG+C   C   A+  D  
Sbjct: 9  AENCVGCGL--CERVCPKGSITVTADGNFNVIIDDTCVNCGICAVYCQYGALNIDAP 63



 Score = 40.5 bits (94), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 5   VTENCILCKHTDCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +++ CI C    C  +C V          G+    I P+ C  CGVC+  CP++AI
Sbjct: 298 ISDACISCG--ICESLCKVASDNAFSINRGD----IKPENCTSCGVCQANCPMEAI 347



 Score = 40.5 bits (94), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ENC       C EVCP +     Y+G   +  + + C  CG CE  CP +AI+
Sbjct: 217 ENCFGRDCQVCREVCPNNAIEYRYDGGKMVVFN-ERCNFCGACEKFCPGNAIE 268


>gi|258513409|ref|YP_003189631.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777114|gb|ACV61008.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 589

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 2   TYVV-TENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            YVV  + C  CK   C  + CP   F + E    I    C+ CG+C   C   A++ 
Sbjct: 528 PYVVDPDVCKGCKQ--CQRLGCPAMSFNKLEKKAVIDIITCVGCGLCVQICKHGALRQ 583


>gi|222110218|ref|YP_002552482.1| cytochrome c oxidase accessory protein ccog [Acidovorax ebreus
           TPSY]
 gi|221729662|gb|ACM32482.1| cytochrome c oxidase accessory protein CcoG [Acidovorax ebreus
           TPSY]
          Length = 480

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP                ECI CG+C   C
Sbjct: 274 DCIDC--TLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDAC 309


>gi|242280985|ref|YP_002993114.1| glycyl-radical enzyme activating protein [Desulfovibrio
          salexigens DSM 2638]
 gi|242123879|gb|ACS81575.1| glycyl-radical enzyme activating protein family [Desulfovibrio
          salexigens DSM 2638]
          Length = 297

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          T+ C  C    C EVCP D   E E       ++C +CG C   C
Sbjct: 52 TDLCTGCG--KCAEVCPNDAVIEIEGRFGRDTEKCTNCGACTENC 94


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + C  C  T C   CP +      +    I    C+ CG C  +C   AI  +
Sbjct: 575 ADKCKGC--TLCARTCPNNAIIGSVKEVHMIDQSRCVKCGACMEKCRFGAIYKE 626



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     E      I  D+C  C +C   CP +AI
Sbjct: 560 CPAGVCKE-LLQYKIDADKCKGCTLCARTCPNNAI 593


>gi|163783318|ref|ZP_02178311.1| DMSO reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881426|gb|EDP74937.1| DMSO reductase chain B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 247

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    Y  E +  + ++ D+CI C +C   CP    + D 
Sbjct: 72  SCLHCQDAPCVPVCPTGASYKREQDGIVLVNYDDCIGCKLCSWSCPYGCREFDE 125


>gi|160933254|ref|ZP_02080643.1| hypothetical protein CLOLEP_02100 [Clostridium leptum DSM 753]
 gi|156868328|gb|EDO61700.1| hypothetical protein CLOLEP_02100 [Clostridium leptum DSM 753]
          Length = 603

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +  C  CK   C++   CP        +   I P  C  C +C   CP  AI+
Sbjct: 547 VNSHKCTGCK--RCIKELGCP--AISYSGHKAVIEPSMCYGCTICAQVCPFGAIE 597


>gi|121593503|ref|YP_985399.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120605583|gb|ABM41323.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 480

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP                ECI CG+C   C
Sbjct: 274 DCIDC--TLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDAC 309


>gi|90417835|ref|ZP_01225747.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337507|gb|EAS51158.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 163

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        +   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTVRYDLDMVKCIYCGFCQEACPVDAI 118



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 103 CIYCGF--CQEACPVDAIVEGPNF 124



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 61 ERCIACKLCEAICPAQAITIEAGP 84


>gi|76666825|emb|CAJ31202.1| Adenosine-5-phosphosulfate reductase subunit B (AprB) [uncultured
          sulfate-reducing bacterium]
          Length = 152

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 2  TYVVTENCILCKH---TDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
          +YV+ E C  CK    T C  VCP D     E  +      PD C +C  C   CPV AI
Sbjct: 3  SYVIAEKCDGCKALDKTACQYVCPNDLMVLDEGQMKAFNQEPDMCWECYCCVKICPVQAI 62

Query: 56 K 56
          +
Sbjct: 63 E 63


>gi|325957919|ref|YP_004289385.1| archaeoflavoprotein [Methanobacterium sp. AL-21]
 gi|325329351|gb|ADZ08413.1| archaeoflavoprotein, MJ0208 family [Methanobacterium sp. AL-21]
          Length = 230

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C+       CP D    G   + I+  +C  CG C+  CP +A+
Sbjct: 145 ETCKNCEPCQAAAACPQDAITPG---VEINLLKCEGCGTCQTACPFNAV 190


>gi|284174515|ref|ZP_06388484.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus 98/2]
 gi|261601935|gb|ACX91538.1| NADH-quinone oxidoreductase, chain I [Sulfolobus solfataricus 98/2]
          Length = 167

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D        G+ F  I+   C+ CG C   CPVDA+K 
Sbjct: 60  DVCIGC--TLCALICPADAMKMVTESGKKFPQINYGRCVFCGFCVDVCPVDALKE 112



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + ++ D CI C +C   CP DA+K  TE G + + +IN
Sbjct: 54 MIRLYKDVCIGCTLCALICPADAMKMVTESG-KKFPQIN 91


>gi|163815648|ref|ZP_02207021.1| hypothetical protein COPEUT_01823 [Coprococcus eutactus ATCC 27759]
 gi|158449285|gb|EDP26280.1| hypothetical protein COPEUT_01823 [Coprococcus eutactus ATCC 27759]
          Length = 524

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDAIKPDTE 60
           T+N I C    C   CP  C   G N  ++     +P  CI CG+C   C   AI    E
Sbjct: 396 TQN-IPCN--PCQNACPKGCISIGANITSLPTVTENP--CIGCGMCVASCSGQAIFLVDE 450

Query: 61  PGLELW 66
              + +
Sbjct: 451 DTGDGY 456


>gi|159906061|ref|YP_001549723.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159887554|gb|ABX02491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 154

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+ C  +   C +VCPV+   E +  L +  + CI C +C   CP+ A
Sbjct: 41 CLQCHPEKAPCKQVCPVNAIEEIDGALVVDEESCILCRLCMIACPIGA 88


>gi|154248544|ref|YP_001419502.1| NADH dehydrogenase subunit I [Xanthobacter autotrophicus Py2]
 gi|226737417|sp|A7IP99|NUOI_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|154162629|gb|ABS69845.1| NADH-quinone oxidoreductase, chain I [Xanthobacter autotrophicus
           Py2]
          Length = 162

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 60 ERCIACKLCEAICPAQAITIEAGP 83


>gi|194332883|ref|YP_002014743.1| sulfite reductase, dissimilatory-type subunit beta
           [Prosthecochloris aestuarii DSM 271]
 gi|194310701|gb|ACF45096.1| sulfite reductase, dissimilatory-type beta subunit
           [Prosthecochloris aestuarii DSM 271]
          Length = 359

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVNGKKSLMVDESKCICCGACFGACPAMEINHPEHSKFAIWV 264


>gi|15641524|ref|NP_231156.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587222|ref|ZP_01676996.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|153818533|ref|ZP_01971200.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|153822815|ref|ZP_01975482.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227081674|ref|YP_002810225.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229508536|ref|ZP_04398039.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229511393|ref|ZP_04400872.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229518532|ref|ZP_04407975.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229607941|ref|YP_002878589.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254848637|ref|ZP_05237987.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262161670|ref|ZP_06030688.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|298498397|ref|ZP_07008204.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
 gi|9656020|gb|AAF94670.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548565|gb|EAX58619.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|126510936|gb|EAZ73530.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|126519674|gb|EAZ76897.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227009562|gb|ACP05774.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229343221|gb|EEO08196.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229351358|gb|EEO16299.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229354490|gb|EEO19413.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229370596|gb|ACQ61019.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254844342|gb|EET22756.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262028402|gb|EEY47057.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|297542730|gb|EFH78780.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
          Length = 553

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG       + I+P  C   G C   CP +AI          + +++
Sbjct: 189 CVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 247



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 417 TSDCTLC--MSCVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACP 462



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 166 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQIN 213


>gi|297584150|ref|YP_003699930.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Bacillus selenitireducens MLS10]
 gi|297142607|gb|ADH99364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
          selenitireducens MLS10]
          Length = 182

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
          + +C  C+  +C+ VCP   F +  + +  ++   C  CG+C   CP DAI
Sbjct: 48 SSSCHHCQSPECLRVCPKQTFSKDRDGIVKLNEQICDGCGLCAAACPFDAI 98


>gi|317052597|ref|YP_004113713.1| nitrate reductase subunit beta [Desulfurispirillum indicum S5]
 gi|316947681|gb|ADU67157.1| nitrate reductase, beta subunit [Desulfurispirillum indicum S5]
          Length = 493

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 1   MTYV-VTENCILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPV 52
           M +  +   C  C +  CV  CP    Y  GE+ +  I+ ++C    +C   CP 
Sbjct: 175 MAFFYLPRRCNHCLNAACVAGCPSGAIYKRGEDGVVLINQEKCRGWRMCVSACPY 229


>gi|224371827|ref|YP_002605991.1| putative pyridine nucleotide-disulfide oxidoreductase
           [Desulfobacterium autotrophicum HRM2]
 gi|223694544|gb|ACN17827.1| putative pyridine nucleotide-disulfide oxidoreductase
           [Desulfobacterium autotrophicum HRM2]
          Length = 777

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 8   NCILCKHTD-CVEVCPVDCFYEGE---NFLAI--HPDECIDCGVCEPECPVD--AIKPDT 59
           +C  C+    C  VCP       E   +       P+ CI CG C   CP    A+ P+ 
Sbjct: 716 SCGRCRDCHICETVCPEGAISRVELVPDGYEYRADPELCIGCGFCAGACPCGIWALVPNV 775

Query: 60  E 60
            
Sbjct: 776 P 776


>gi|222873278|gb|EEF10409.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           V+ E  CI C  T C++ CP D       F+  +    C  C +C P CPVD I+
Sbjct: 86  VIDEAWCIGC--TLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCIE 138


>gi|167747453|ref|ZP_02419580.1| hypothetical protein ANACAC_02174 [Anaerostipes caccae DSM 14662]
 gi|167652815|gb|EDR96944.1| hypothetical protein ANACAC_02174 [Anaerostipes caccae DSM 14662]
          Length = 276

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C  C    C EVCP+      +         CI CG C  +CP  A   + E  L    
Sbjct: 205 DCDGCG--ICAEVCPMGSIRREDIRTV--DGICIKCGACIKKCPKHAKYYEDEGYLYHKT 260

Query: 68  KINSEY 73
           ++  +Y
Sbjct: 261 ELEEQY 266


>gi|152980715|ref|YP_001353160.1| NADH dehydrogenase subunit I [Janthinobacterium sp. Marseille]
 gi|151280792|gb|ABR89202.1| NADH dehydrogenase I chain I [Janthinobacterium sp. Marseille]
          Length = 162

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESDQREDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESDQRED 87


>gi|123967404|ref|XP_001313877.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121895788|gb|EAY00960.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 324

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
            CI+C    C + CP D      +     + P +C  CG+CE  CP  AI+
Sbjct: 262 ACIMCG--KCTQ-CPNDAITIVPSRWIYKVDPYKCNGCGLCESVCPTGAIE 309


>gi|190573793|ref|YP_001971638.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|194365330|ref|YP_002027940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Stenotrophomonas maltophilia R551-3]
 gi|254523574|ref|ZP_05135629.1| ferredoxin [Stenotrophomonas sp. SKA14]
 gi|190011715|emb|CAQ45334.1| putative ferredoxin [Stenotrophomonas maltophilia K279a]
 gi|194348134|gb|ACF51257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Stenotrophomonas maltophilia R551-3]
 gi|219721165|gb|EED39690.1| ferredoxin [Stenotrophomonas sp. SKA14]
          Length = 93

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  + E C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINELCVNCDV--CEPACPNQAIAMGETIYVIDPARCTECVGHFDEPQCVVVCPVEC 58

Query: 55 IKPDTE 60
          I PD E
Sbjct: 59 IDPDPE 64


>gi|53722687|ref|YP_111672.1| formate dehydrogenase-O, iron-sulfur subunit [Burkholderia
           pseudomallei K96243]
 gi|76819106|ref|YP_335888.1| formate dehydrogenase subunit beta [Burkholderia pseudomallei
           1710b]
 gi|126444663|ref|YP_001063389.1| formate dehydrogenase subunit beta [Burkholderia pseudomallei 668]
 gi|134278605|ref|ZP_01765319.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
 gi|167724435|ref|ZP_02407671.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           DM98]
 gi|167743399|ref|ZP_02416173.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 14]
 gi|167820584|ref|ZP_02452264.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 91]
 gi|167915699|ref|ZP_02502790.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 112]
 gi|167923540|ref|ZP_02510631.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           BCC215]
 gi|254265045|ref|ZP_04955910.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1710a]
 gi|52213101|emb|CAH39140.1| formate dehydrogenase-O, iron-sulfur subunit [Burkholderia
           pseudomallei K96243]
 gi|76583579|gb|ABA53053.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1710b]
 gi|126224154|gb|ABN87659.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668]
 gi|134250389|gb|EBA50469.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
 gi|254216047|gb|EET05432.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1710a]
          Length = 304

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|332795924|ref|YP_004457424.1| DSMO reductase subunit B [Acidianus hospitalis W1]
 gi|332693659|gb|AEE93126.1| DSMO reductase subunit B [Acidianus hospitalis W1]
          Length = 269

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           +C  C+   CV+VCP    Y    +  + I  + C     C   CP   I  D
Sbjct: 78  SCFHCEDAPCVKVCPTGAIYKRRVDGVVVIDYNVCQGFKYCITACPYGNIDFD 130


>gi|291542332|emb|CBL15442.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus bromii L2-63]
          Length = 286

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    CV+ C        +  +++   +C  CG C   CP DA
Sbjct: 163 DACIGCGV--CVKACRQGAITLEDGKISVDNSKCNYCGRCFKACPTDA 208



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +C++    D   +G   ++   D CI CGVC   C   AI  + 
Sbjct: 141 NCLKAEENDVGIKGGIKVSWKEDACIGCGVCVKACRQGAITLED 184


>gi|257076761|ref|ZP_05571122.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma
           acidarmanus fer1]
          Length = 628

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 2   TYVVTEN-CILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCE--PECPVDAIK 56
           TY V ++ C  C   +CVE   CP     EG N + I  + C  CGVC     CP  AI+
Sbjct: 570 TYTVNQDKCGKC--MNCVENFACPAISI-EGGN-IKIDSNICDGCGVCAEPYVCPFKAIE 625


>gi|217966954|ref|YP_002352460.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dictyoglomus turgidum DSM 6724]
 gi|217336053|gb|ACK41846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dictyoglomus turgidum DSM 6724]
          Length = 542

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 10 ILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          I C++   C+  CPV      +    +  DEC+ CGVC   CP  A
Sbjct: 10 ISCQYCYKCLRNCPVKSIMFNKGKSYVIDDECVLCGVCIEVCPQKA 55


>gi|194290510|ref|YP_002006417.1| 4fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193224345|emb|CAQ70356.1| putative 4Fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424]
          Length = 721

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 15  TDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+++C  +      ++G+  + + P+ C+ CG C   CP  AI        
Sbjct: 344 TACIDICSTEAIASRWHDGKGRIEVAPNLCMGCGACTTVCPSGAISYAYPGPE 396



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T  C LC    CV  CP     +      L+     C+ CG+C+  CP DA+
Sbjct: 585 VDTGKCTLCL--ACVGACPSQALRDNPERPVLSFIERNCVQCGLCQKTCPEDAV 636



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 215 IDLDLCTRCNACIDACPEGAI 235


>gi|153938544|ref|YP_001391087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
 gi|152934440|gb|ABS39938.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
          str. Langeland]
          Length = 579

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV       +   I  + CI CG C   CP +A
Sbjct: 10 NCKNC--YKCLRSCPVKAIKFKNHQAKIEMERCILCGRCVLVCPQNA 54


>gi|89896276|ref|YP_519763.1| hypothetical protein DSY3530 [Desulfitobacterium hafniense Y51]
 gi|89335724|dbj|BAE85319.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 319

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           +V TE C+      CV+ CP  V    E  +      +HPD C  C  C  +CP  AI+
Sbjct: 259 FVDTERCMG--DGLCVDFCPSGVLAMVEAGDRKVAQALHPDACSACYTCVGQCPQQAIQ 315


>gi|330808474|ref|YP_004352936.1| cytochrome c oxidase accessory protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376582|gb|AEA67932.1| Putative cytochrome c oxidase accessory protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 471

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|319407259|emb|CBI80898.1| NADH dehydrogenase I chain I [Bartonella sp. 1-1C]
          Length = 163

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|229591969|ref|YP_002874088.1| putative ferredoxin [Pseudomonas fluorescens SBW25]
 gi|229363835|emb|CAY51284.1| putative ferredoxin [Pseudomonas fluorescens SBW25]
          Length = 475

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 273 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 308


>gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 630

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 3   YVVTENCIL-CKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP--VDAIKPD 58
           Y+V + C   C  + CV  CP +  Y  E+ + AI  D+C+ C  C   CP   DA++  
Sbjct: 559 YIVPQKCSKLC--SACVGSCPTEAIYTREDGIKAITQDKCVKCDNCLKACPPEYDAVEKL 616

Query: 59  TEP 61
           + P
Sbjct: 617 SPP 619


>gi|225412237|ref|ZP_03761426.1| hypothetical protein CLOSTASPAR_05459 [Clostridium asparagiforme
           DSM 15981]
 gi|225042255|gb|EEG52501.1| hypothetical protein CLOSTASPAR_05459 [Clostridium asparagiforme
           DSM 15981]
          Length = 173

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-EGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++  C+ C    CV  CP  C   + E  L I     CI C  C   CP      + E  
Sbjct: 57  ISIACMHCTDAPCVTACPCACIRKDAETGLTIYDNASCIGCHSCAMACPFGIPAFNEEGR 116

Query: 63  LEL 65
           ++ 
Sbjct: 117 MQK 119


>gi|210634658|ref|ZP_03298210.1| hypothetical protein COLSTE_02134 [Collinsella stercoris DSM 13279]
 gi|210158730|gb|EEA89701.1| hypothetical protein COLSTE_02134 [Collinsella stercoris DSM 13279]
          Length = 260

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
            C +C    C   CP       ++    + P++C+ CG C   CP
Sbjct: 147 ACHMCTTALCQTSCPHGAIVTMDDGTRTVDPEKCVGCGTCVAACP 191



 Score = 39.4 bits (91), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEVCP-VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C+ C    CV  CP        E   +    +C+ CG C  +CP  A++
Sbjct: 175 VDPEKCVGCG--TCVAACPWHMPVVNTETHKS---TKCVACGRCADQCPNGALE 223


>gi|172044708|gb|ACB69918.1| perchlorate reductase B [Dechlorosoma sp. KJ]
          Length = 333

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPV 52
           C  C    C+E CP +  Y  E +  + IH D+C     C   CP 
Sbjct: 137 CNHCTKPACLEACPNEAIYKREQDGIVVIHQDKCKGAQACVQSCPY 182


>gi|171185518|ref|YP_001794437.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoproteus neutrophilus V24Sta]
 gi|170934730|gb|ACB39991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoproteus neutrophilus V24Sta]
          Length = 129

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          C  C    CV  CP          L      C  CG+C   CP  AI+  T P L  +L 
Sbjct: 15 CAKCNL--CVRTCPTGALKP-PRVLY---SRCTGCGLCTYTCPRGAIEMATRPSLAAYLL 68

Query: 69 I 69
          I
Sbjct: 69 I 69


>gi|159905022|ref|YP_001548684.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanococcus maripaludis C6]
 gi|159886515|gb|ABX01452.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanococcus maripaludis C6]
          Length = 612

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 3   YVVTEN-CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+  N C  CK   CVE   CP            I  + C  CG+C+  CP DAI    
Sbjct: 556 YVIDRNKCTGCK--ICVERLGCP--AITLNGKIPEIM-ENCTGCGLCKAICPADAINEVD 610

Query: 60  E 60
           E
Sbjct: 611 E 611


>gi|149926238|ref|ZP_01914500.1| ferredoxin [Limnobacter sp. MED105]
 gi|149825056|gb|EDM84268.1| ferredoxin [Limnobacter sp. MED105]
          Length = 160

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++CI C  T C++ CPVD      +   A+  + C  C +C P CPVD I     P    
Sbjct: 30  QHCIGC--TLCIKACPVDAIVGSSKRRHAVLAELCTGCELCIPPCPVDCIDMVFMPEFSA 87

Query: 66  WLKINSEYATQWP 78
           W +  +  A    
Sbjct: 88  WDQTQAHAARTRM 100



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 22 PVD--CFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
          PVD  C    E  + +IHP  CI C +C   CPVDAI
Sbjct: 11 PVDPSCGTTIERHIASIHPQHCIGCTLCIKACPVDAI 47


>gi|170722740|ref|YP_001750428.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas putida
           W619]
 gi|169760743|gb|ACA74059.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas putida
           W619]
          Length = 472

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 270 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 305


>gi|153951285|ref|YP_001398598.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938731|gb|ABS43472.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. doylei 269.97]
          Length = 81

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T++C+ C    C E CP +  YE      I PD C +C        C   CP + 
Sbjct: 1  MSLLITKDCVCCD--ACKEECPDEAIYENSPIYVIDPDLCSECVNDFSEPACIVACPYEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|77458045|ref|YP_347550.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pseudomonas fluorescens
           Pf0-1]
 gi|77382048|gb|ABA73561.1| putative ferredoxin [Pseudomonas fluorescens Pf0-1]
          Length = 472

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 270 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 305


>gi|15922172|ref|NP_377841.1| hypothetical protein ST1859 [Sulfolobus tokodaii str. 7]
 gi|15622961|dbj|BAB66950.1| 620aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 620

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDC------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI CK  DC   CPV        F     F +I   +C+  G C   CP + I 
Sbjct: 553 QQCIECKTVDCANACPVGLTDMRGEFIRKGEFRSI---KCVGIGECIDACPYNNIF 605


>gi|148546847|ref|YP_001266949.1| cytochrome c oxidase cbb3 type, accessory protein FixG [Pseudomonas
           putida F1]
 gi|148510905|gb|ABQ77765.1| Cytochrome c oxidase cbb3 type, accessory protein FixG [Pseudomonas
           putida F1]
          Length = 472

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 270 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 305


>gi|282891842|ref|ZP_06300322.1| hypothetical protein pah_c198o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498275|gb|EFB40614.1| hypothetical protein pah_c198o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 157

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E C+ C+   C  VCP    Y              GE +     I+   CI CG CE  C
Sbjct: 56  ERCVGCEL--CAIVCPAQAIYVKPSENEPKNEHSHGERYASDFQINMLRCIFCGYCEEAC 113

Query: 51  PVDAI 55
           P  AI
Sbjct: 114 PTGAI 118



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)

Query: 37 PDECIDCGVCEPECPVDAIK---PDTEPGLEL 65
           + C+ C +C   CP  AI     + EP  E 
Sbjct: 55 KERCVGCELCAIVCPAQAIYVKPSENEPKNEH 86


>gi|256544870|ref|ZP_05472241.1| Na(+)-translocating NADH-quinone reductase, A subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399369|gb|EEU12975.1| Na(+)-translocating NADH-quinone reductase, A subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 443

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 23/71 (32%)

Query: 5   VTENCILCKHTDCVEVCPV-------------DCFYEGENFLAIHPDECIDCGVCEPECP 51
           +T  CI C    CV VCPV             + F + ++   +    CI+CG C   CP
Sbjct: 368 ITNPCIRC--AKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILD---CIECGSCSYICP 422

Query: 52  -----VDAIKP 57
                V+AI+ 
Sbjct: 423 SKRPLVEAIRF 433


>gi|255323638|ref|ZP_05364768.1| 4Fe-4S binding domain protein [Campylobacter showae RM3277]
 gi|255299352|gb|EET78639.1| 4Fe-4S binding domain protein [Campylobacter showae RM3277]
          Length = 227

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  E      ++ D+CI C  C   CP D
Sbjct: 97  SCQQCEDAPCVNVCPTKACHKDEKTGITTMNTDDCIACKYCIVACPYD 144


>gi|189423121|ref|YP_001950298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189419380|gb|ACD93778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 367

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 4   VVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           VVT  +C  C    C++ C  D     +    I   +C  C  C   CP  A+       
Sbjct: 188 VVTARHCTACGL--CIKACAHDAIRIVDGVAVIDAIKCAGCSRCITVCPTKAVAIQWNEA 245

Query: 63  LELWLKINSEYA 74
            +L +K  +EYA
Sbjct: 246 ADLVMKKMAEYA 257


>gi|91787179|ref|YP_548131.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696404|gb|ABE43233.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
          JS666]
          Length = 86

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP    Y G+    I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNQAIYLGKEIYEIDPHKCTECVGHFDEPQCVQVCPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPVD 62


>gi|88601738|ref|YP_501916.1| putative ATPase RIL [Methanospirillum hungatei JF-1]
 gi|88187200|gb|ABD40197.1| ABC transporter related protein [Methanospirillum hungatei JF-1]
          Length = 588

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 7  ENC--ILCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C  T+C+  CP           + E    I  + C+ CG+C  +CP +AI
Sbjct: 9  DLCHSRKCG-TECILYCPRVRTGDETVLLDEEGKAVISEELCVGCGICVKKCPFEAI 64


>gi|20090579|ref|NP_616654.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina acetivorans C2A]
 gi|19915611|gb|AAM05134.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina acetivorans C2A]
          Length = 619

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 6   TENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           TE+C  C    C++   CP      GE    I  D C  CG+C   CP ++I  D
Sbjct: 564 TESCTGCGF--CIKQLGCPAIFLPPGEEKPFIL-DSCNGCGLCAQICPSESISED 615


>gi|53716344|ref|YP_106249.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|67640777|ref|ZP_00439572.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|121597338|ref|YP_991287.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|124381274|ref|YP_001025697.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126447842|ref|YP_001077773.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|126457799|ref|YP_001076291.1| formate dehydrogenase subunit beta [Burkholderia pseudomallei
           1106a]
 gi|166999433|ref|ZP_02265272.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei PRL-20]
 gi|167828947|ref|ZP_02460418.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9]
 gi|167850419|ref|ZP_02475927.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           B7210]
 gi|217422403|ref|ZP_03453906.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576]
 gi|226200065|ref|ZP_03795614.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510552|ref|ZP_04523267.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|242312971|ref|ZP_04811988.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|254176258|ref|ZP_04882916.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254185039|ref|ZP_04891628.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
 gi|254186271|ref|ZP_04892789.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194033|ref|ZP_04900465.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
 gi|254201131|ref|ZP_04907496.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|254205101|ref|ZP_04911454.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|254301322|ref|ZP_04968766.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|254359225|ref|ZP_04975497.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|52422314|gb|AAU45884.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|121225136|gb|ABM48667.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|126231567|gb|ABN94980.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|126240696|gb|ABO03808.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|147748743|gb|EDK55818.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|147754687|gb|EDK61751.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|148028412|gb|EDK86372.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|157810773|gb|EDO87943.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157933957|gb|EDO89627.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160697300|gb|EDP87270.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|169650784|gb|EDS83477.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
 gi|184215631|gb|EDU12612.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
 gi|217394634|gb|EEC34653.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 576]
 gi|225927917|gb|EEH23955.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002757|gb|EEP52181.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238521562|gb|EEP85013.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei GB8
           horse 4]
 gi|242136210|gb|EES22613.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106b]
 gi|243064499|gb|EES46685.1| formate dehydrogenase-O, beta subunit [Burkholderia mallei PRL-20]
 gi|261826235|gb|ABM99453.2| formate dehydrogenase-O, beta subunit [Burkholderia mallei NCTC
           10229]
          Length = 304

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|301631691|ref|XP_002944931.1| PREDICTED: ferredoxin-like [Xenopus (Silurana) tropicalis]
          Length = 85

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    GE    I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISLGELHYGIDPHKCTECVGHFDEPQCVQICPVAC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IPVD 62


>gi|288931600|ref|YP_003435660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
 gi|288893848|gb|ADC65385.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
          Length = 159

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
          C+ C+   C+ VCPV   YE        I  D+C+ C  C   CP+ 
Sbjct: 52 CVQCEDPVCMAVCPVSAIYEDPKTGAKIIDYDKCMGCRSCVLACPIG 98


>gi|317046310|ref|YP_004113958.1| formate dehydrogenase subunit beta [Pantoea sp. At-9b]
 gi|316947927|gb|ADU67402.1| formate dehydrogenase, beta subunit [Pantoea sp. At-9b]
          Length = 291

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNKEDN 155


>gi|257464067|ref|ZP_05628451.1| hypothetical protein FuD12_09476 [Fusobacterium sp. D12]
 gi|317061588|ref|ZP_07926073.1| iron-sulfur cluster-binding protein [Fusobacterium sp. D12]
 gi|313687264|gb|EFS24099.1| iron-sulfur cluster-binding protein [Fusobacterium sp. D12]
          Length = 271

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  CK   C +VCP+      EN   I P  CI C  C  +CP DA   + E  L   
Sbjct: 199 ERCTDCK--ICAKVCPMGSISF-ENVREI-PGICIKCCACIKKCPEDAKYYEDEGYLYHQ 254

Query: 67  LKINSEYATQ 76
            ++  EY  +
Sbjct: 255 HELEEEYIRR 264


>gi|257791053|ref|YP_003181659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474950|gb|ACV55270.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 375

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           T+        DCV  CP    +       L+     CI CG+C   CP  AI+
Sbjct: 301 TDRSRCTNSLDCVAACPTGARFPSPENGKLSFDARYCIGCGLCVDACPQQAIE 353



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 4  VVTENCILCKHTDCVE---VCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
          V+ + C   +  DC      CP D     E+    I  D C  CG+C   C  
Sbjct: 28 VLRDYCTRVRGADCSRCALACPHDAIGFAEDGRPTIDADVCTRCGICLGICDA 80


>gi|187776517|ref|ZP_02992990.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC
           15579]
 gi|187775176|gb|EDU38978.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC
           15579]
          Length = 392

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C  + C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI+
Sbjct: 322 IEEKCIGC--SRCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAIE 377



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 295 REGGDFYFINPKVTNFLKDIIAPDPTLIEEKCIGCSRCAEVCP 337


>gi|114765005|ref|ZP_01444152.1| NADH dehydrogenase subunit I [Pelagibaca bermudensis HTCC2601]
 gi|114542552|gb|EAU45577.1| NADH dehydrogenase subunit I [Roseovarius sp. HTCC2601]
          Length = 164

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|73668301|ref|YP_304316.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
 gi|72395463|gb|AAZ69736.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
          Length = 60

 Score = 48.2 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
          V  + C  C    CV+ CP D     E      +  DEC++CG CE  CP  AIK + 
Sbjct: 5  VNADECSGCG--TCVDECPNDAITLDEEKGIAVVDNDECVECGACEEACPNQAIKVEE 60


>gi|328950039|ref|YP_004367374.1| NAD(P)H-quinone oxidoreductase subunit I [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450363|gb|AEB11264.1| NAD(P)H-quinone oxidoreductase subunit I [Marinithermus
           hydrothermalis DSM 14884]
          Length = 176

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C  VCP    Y              GE +     I+   CI CG+CE  C
Sbjct: 51  EKCIGC--SLCAAVCPAYAIYVEAAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  +  +
Sbjct: 109 PTGAVVLGNEFEMADY 124


>gi|313497901|gb|ADR59267.1| Iron-sulfur cluster-binding protein [Pseudomonas putida BIRD-1]
          Length = 472

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 270 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 305


>gi|308188782|ref|YP_003932913.1| formate dehydrogenase-O, iron-sulfur subunit [Pantoea vagans C9-1]
 gi|308059292|gb|ADO11464.1| formate dehydrogenase-O, iron-sulfur subunit [Pantoea vagans C9-1]
          Length = 301

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP +  + + E  
Sbjct: 100 DGCMHCADPGCLKACPSAGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNKEDN 157


>gi|298675715|ref|YP_003727465.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanohalobium evestigatum Z-7303]
 gi|298288703|gb|ADI74669.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanohalobium evestigatum Z-7303]
          Length = 86

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + CI CK   C  +CP +     E+ F     D C  CGVC  ECPV AI+   E 
Sbjct: 32 DKCIKCKL--CELLCPDEAINPREDGFFEYDYDYCKGCGVCANECPVSAIEMVLEE 85


>gi|258405609|ref|YP_003198351.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797836|gb|ACV68773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 324

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C    CV  C      E     + +  ++C+ CGVC   CP  A+  +  P 
Sbjct: 249 ACTQCGQ--CVRKCQFAAIVENVAGTVTVDAEKCMGCGVCVNNCPTGALVLERAPE 302


>gi|134095023|ref|YP_001100098.1| NADH dehydrogenase subunit I [Herminiimonas arsenicoxydans]
 gi|156633522|sp|A4G636|NUOI_HERAR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|133738926|emb|CAL61973.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [Herminiimonas arsenicoxydans]
          Length = 162

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD 87


>gi|160900604|ref|YP_001566186.1| NADH dehydrogenase subunit I [Delftia acidovorans SPH-1]
 gi|160366188|gb|ABX37801.1| NADH-quinone oxidoreductase, chain I [Delftia acidovorans SPH-1]
          Length = 169

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 68  ERCIACKL--CEAVCPAMAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 124



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 68 ERCIACKLCEAVCPAMAITIESD 90


>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
           4304]
 gi|3122769|sp|O28002|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
 gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 264

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           VV ENC  C    C+E CP + F  +G+     +   C  CG C   C ++AI
Sbjct: 168 VVNENCNGCGD--CIEACPRNVFEKDGDKVRVKNVMACSMCGECVEVCEMNAI 218


>gi|71029698|ref|XP_764492.1| RNAse L inhibitor [Theileria parva strain Muguga]
 gi|68351446|gb|EAN32209.1| RNAse L inhibitor, putative [Theileria parva]
          Length = 636

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 11 LCKHTDCVEVCPVDCF--YEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           CK   C + C   C     G+  + + P           CI CG+C  +CP +AI
Sbjct: 28 KCKPKKCRQECKRTCPVTKTGKQCIEVDPTSKIAFISEHLCIGCGICVKKCPFEAI 83


>gi|194336248|ref|YP_002018042.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308725|gb|ACF43425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 62

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV+    G++  +I    C +C        C   CP + 
Sbjct: 1  MALYITEECTYCG--ACEPECPVNAIVAGDDIYSIDASTCTECAGYADSPACSAVCPAEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|332298441|ref|YP_004440363.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
 gi|332181544|gb|AEE17232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Treponema brennaborense DSM 12168]
          Length = 394

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 9  CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
          C  C    C + CP +        EG  F  +  ++CIDCG+C  +CP
Sbjct: 11 CFGCG--SCFQACPKNAIRMEADSEGFLFPKVDEEKCIDCGLCVKKCP 56



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESL 87
           ++C  CG C   CP +AI+ + +    L+ K++ E          K  SL
Sbjct: 8  KNKCFGCGSCFQACPKNAIRMEADSEGFLFPKVDEEKCIDCGLCVKKCPSL 58


>gi|325185181|emb|CCA19671.1| hypothetical protein ALNC14_058140 [Albugo laibachii Nc14]
          Length = 627

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 2  TYVVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPV 52
            V ++ C    C+  +C + CPV      C           I  D CI CG+C  +CP 
Sbjct: 9  ALVSSDKCKPKKCR-QECKKSCPVVRMGNLCIEVTPKSKLAFISEDLCIGCGICVKKCPF 67

Query: 53 DAI 55
          +AI
Sbjct: 68 EAI 70


>gi|289523694|ref|ZP_06440548.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503386|gb|EFD24550.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 297

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + C  C    C EVC         + + + P+ C  CG C   CP  AI
Sbjct: 72  ADRCNHCG--RCAEVCAYHAIASLPSKVIVFPELCHGCGACSYLCPESAI 119


>gi|317050864|ref|YP_004111980.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Desulfurispirillum indicum S5]
 gi|316945948|gb|ADU65424.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurispirillum indicum S5]
          Length = 591

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +V  + CI C    C+ V CP   +      + I    C  C +C  ECP DAIK
Sbjct: 534 HVDIKECIGCG--ACLNVGCPALVWNASLKVVTIDTTMCTGCEICMYECPTDAIK 586


>gi|283834651|ref|ZP_06354392.1| hypothetical protein CIT292_08856 [Citrobacter youngae ATCC 29220]
 gi|291069564|gb|EFE07673.1| formate dehydrogenase, beta subunit [Citrobacter youngae ATCC
           29220]
          Length = 300

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155


>gi|88858486|ref|ZP_01133128.1| putative 4Fe-4S ferredoxin [Pseudoalteromonas tunicata D2]
 gi|88820103|gb|EAR29916.1| putative 4Fe-4S ferredoxin [Pseudoalteromonas tunicata D2]
          Length = 82

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M  ++   CI C    CV  CP +  + G     I P +C +C        C   CP+D 
Sbjct: 1  MALLINNKCINCD--MCVPECPNEAIFMGTKIYQIEPTKCTECIGHYDTPTCISVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 649

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
            E C  C    C++ CPV     E ++   I  ++CI CG C+  C  +A+
Sbjct: 598 GEKCRGCGL--CLKNCPVQAIRGEKKSPHTIDNEKCIKCGACQTSCKFNAV 646



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  ++C  CG+C   CPV AI+ + +   
Sbjct: 596 IDGEKCRGCGLCLKNCPVQAIRGEKKSPH 624


>gi|319764056|ref|YP_004127993.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|317118617|gb|ADV01106.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
          Length = 699

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 10  ILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C  + CV++C  +          + ++P  C+ CG C   CP  A+        +
Sbjct: 318 VGC--SACVDICSAEAIASDPARQQVVVNPHLCVGCGACTTVCPTGAMGYAYPSAQD 372



 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+CE  CP  AI
Sbjct: 568 DRCTLC--MSCVSACPASALQDNPQAPQLRFIERNCVQCGLCERTCPEGAI 616



 Score = 40.9 bits (95), Expect = 0.054,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + +  D C  C  C   CP  A++ + +     +++ N
Sbjct: 563 VVVDKDRCTLCMSCVSACPASALQDNPQAPQLRFIERN 600



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLE 64
           + C  C    CV  CP            I    C     C   C V  AI+ D E   +
Sbjct: 195 DLCTRCN--ACVAACPEGAIGLD---YQIDMAACTGHRDCVKACAVAGAIRFDREAEPQ 248



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP  AI  D +  +
Sbjct: 192 IDLDLCTRCNACVAACPEGAIGLDYQIDM 220


>gi|258592355|emb|CBE68664.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [NC10 bacterium 'Dutch sediment']
          Length = 153

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E C+ C+   C   CP D  Y             +GE +     IH   CI CG CE  C
Sbjct: 50  ERCVGCEL--CAVACPADAIYVEAAENTGQERHSKGERYAKVYKIHMLRCIFCGYCEEAC 107

Query: 51  PVDAI 55
           P +AI
Sbjct: 108 PEEAI 112



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 22 PVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIKPD 58
          P+   Y G + L +  D    C+ C +C   CP DAI  +
Sbjct: 31 PLAPRYRGLHMLVVGDDGMERCVGCELCAVACPADAIYVE 70


>gi|288962886|ref|YP_003453180.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288915152|dbj|BAI76636.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 505

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP+               +CI+CG+C   C
Sbjct: 287 DCIDCGQ--CVQVCPIGIDVRTGEQA-----DCINCGLCVDAC 322



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           CIDCG C   CP+ 
Sbjct: 288 CIDCGQCVQVCPIG 301


>gi|163746211|ref|ZP_02153570.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45]
 gi|161380956|gb|EDQ05366.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45]
          Length = 164

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEAREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D E   +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEARED 89



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|254372989|ref|ZP_04988478.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570716|gb|EDN36370.1| iron-sulfur cluster-binding protein [Francisella novicida
           GA99-3549]
          Length = 209

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|157373638|ref|YP_001472238.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157316012|gb|ABV35110.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 236

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           +C  CK+  CV VCP    +  E    + +   +C  C  C   CP DA
Sbjct: 106 SCQQCKNAPCVTVCPTGAAHRDEKTGIVTMDASKCAGCKYCIGACPYDA 154


>gi|148642366|ref|YP_001272879.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|261351019|ref|ZP_05976436.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
 gi|148551383|gb|ABQ86511.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|288860359|gb|EFC92657.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
          Length = 274

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    C E CPV+  +  E  + ++ D+CI C  C   CPV A
Sbjct: 222 DECVNCYL--CEENCPVEAIWLDEEKVVLNNDKCIRCINCTSHCPVGA 267



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 12/61 (19%)

Query: 9   CILCKHTDCVEVCPVD---------CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C    CV+ C  D              +N L I+ DEC++C +CE  CPV+AI  D 
Sbjct: 187 CIGCG--ACVQFCENDSVKLDRTIGPIVHTKN-LEINQDECVNCYLCEENCPVEAIWLDE 243

Query: 60  E 60
           E
Sbjct: 244 E 244



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
          +   CI C    CV+ CPVD       F +A    +C+ C +C   CPV AIK
Sbjct: 46 IAPRCIRCN--MCVDQCPVDAIEPANIFKIAKITHDCVKCEICVQTCPVSAIK 96



 Score = 34.7 bits (79), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 40 CIDCGVCEPECPVDAIKP 57
          CI C +C  +CPVDAI+P
Sbjct: 50 CIRCNMCVDQCPVDAIEP 67


>gi|159043871|ref|YP_001532665.1| NADH dehydrogenase subunit I [Dinoroseobacter shibae DFL 12]
 gi|226737390|sp|A8LIV0|NUOI_DINSH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157911631|gb|ABV93064.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12]
          Length = 164

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|74317168|ref|YP_314908.1| NADH dehydrogenase subunit I [Thiobacillus denitrificans ATCC
           25259]
 gi|115502546|sp|Q3SJP9|NUOI_THIDA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|74056663|gb|AAZ97103.1| NADH-quinone oxidoreductase chain I [Thiobacillus denitrificans
           ATCC 25259]
          Length = 162

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIDSEQRADGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D+E   +
Sbjct: 61 ERCIACKLCEAVCPALAITIDSEQRAD 87


>gi|22074759|gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa Japonica Group]
          Length = 604

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C                    I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|53804899|ref|YP_113273.1| putative glutamate synthase (NADPH) small subunit [Methylococcus
           capsulatus str. Bath]
 gi|53758660|gb|AAU92951.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Methylococcus capsulatus str. Bath]
          Length = 546

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           NC  C    C   CP         G+ +     D C  C VC  +CP  AI+  +EPG 
Sbjct: 491 NCFECDG--CYGACPEQAIVKLGPGKRYRY-DYDRCTGCAVCHEQCPAHAIEMISEPGA 546


>gi|150015671|ref|YP_001307925.1| sulfite reductase, subunit C [Clostridium beijerinckii NCIMB 8052]
 gi|149902136|gb|ABR32969.1| Sulfite reductase, Subunit C [Clostridium beijerinckii NCIMB 8052]
          Length = 321

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V         +  + ++CI CG C   CP  A
Sbjct: 170 DRCVSC--MACVKACKKKSVGALEAINYKIVRNKEKCIGCGECANACPTGA 218


>gi|219667917|ref|YP_002458352.1| hypothetical protein Dhaf_1875 [Desulfitobacterium hafniense DCB-2]
 gi|219538177|gb|ACL19916.1| protein of unknown function DUF169 [Desulfitobacterium hafniense
           DCB-2]
          Length = 319

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIK 56
           +V TE C+      CV+ CP  V    E  +      +HPD C  C  C  +CP  AI+
Sbjct: 259 FVDTERCMG--DGLCVDFCPSGVLAMVEAGDRKVAQALHPDACSACYTCVGQCPQQAIQ 315


>gi|333030659|ref|ZP_08458720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
 gi|332741256|gb|EGJ71738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
          Length = 261

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           E C  C    C  +CPV    +    L   P++CI CG C   CP
Sbjct: 186 ETCNRCG--KCARLCPVGAIPKDAPQLT-DPNKCISCGRCLVICP 227



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEP 61
           + C  CG C   CPV AI  D   
Sbjct: 186 ETCNRCGKCARLCPVGAIPKDAPQ 209


>gi|330506526|ref|YP_004382954.1| formylmethanofuran dehydrogenase subunit F [Methanosaeta concilii
           GP-6]
 gi|328927334|gb|AEB67136.1| formylmethanofuran dehydrogenase, subunit F [Methanosaeta concilii
           GP-6]
          Length = 343

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 14/71 (19%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA------------IHPDECIDCGVCEPE 49
           T V +E C+ C    C +VCP  C    +  LA            I  + C+ CG C   
Sbjct: 99  TVVDSEKCVHCGL--CCDVCPQACIELEDRHLAEDGSLKVGGRTIIDLERCVHCGWCASV 156

Query: 50  CPVDAIKPDTE 60
           CP  AI  +  
Sbjct: 157 CPTGAISFEKP 167



 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 9   CILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  CK   CV  CP +  +       E    ++  PD CI CG C   CPV AI
Sbjct: 179 CQACK--TCVHTCPANALFNREWKAGERGEKVSHRPDACIYCGACAQACPVRAI 230



 Score = 36.7 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCP       + F    +   + C  C  C   CP +A+ 
Sbjct: 145 ERCVHCGW--CASVCPTGAISFEKPFAGTFSRDDNVCQACKTCVHTCPANALF 195



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 14/67 (20%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLA----IHPD--------ECIDCGVCEPEC 50
          + + + CI C    CV+VCP      G         I  D         C  C +C   C
Sbjct: 15 FYLPDRCIGCG--TCVQVCPKGELIIGSVGAVVRGLIDKDFIEKRMSGACAFCALCSRVC 72

Query: 51 PVDAIKP 57
          P  A++ 
Sbjct: 73 PTGALEF 79


>gi|327480767|gb|AEA84077.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 312

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +NC+ C    C++ CP      +  N +   + + CI CG C   CP D
Sbjct: 101 DNCMHCAEPGCLKACPSPGAIVQYANGIVDFNSEHCIGCGYCVAGCPFD 149



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 17/72 (23%)

Query: 6   TENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  CV  CP D     + +N       +C  C           C   CP  +
Sbjct: 133 SEHCIGCGY--CVAGCPFDIPRISKKDNKAY----KCTLCSDRVYHGLEPACVKSCPTGS 186

Query: 55  IKPDTEPGLELW 66
           I+  T+  +  +
Sbjct: 187 IQFGTKEQMLDY 198


>gi|313203867|ref|YP_004042524.1| ferredoxiN-type protein [Paludibacter propionicigenes WB4]
 gi|312443183|gb|ADQ79539.1| ferredoxin-type protein [Paludibacter propionicigenes WB4]
          Length = 511

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 11  LCKHTDCVEVCPVDCFYEGE--NFLAI---HPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C    C E CP    +     + L I     D CI CG CE  CP         P   +
Sbjct: 432 DCG--ACSEHCPTQAVHMIPYKDGLTIPEVTEDICIGCGACESICPA-------RPYQAI 482

Query: 66  WLKINSEYATQWPNITTKKESLPSAAKMDGVKQKY 100
           +++ N         I  KK +   A K D     +
Sbjct: 483 YIEGNET------QILAKKPA--EAEKFDRKIDSF 509


>gi|269215431|ref|ZP_06159285.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Slackia exigua ATCC 700122]
 gi|269130918|gb|EEZ61993.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Slackia exigua ATCC 700122]
          Length = 205

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C++  C +VCP    + +    + I  D+CI C +C   CP +A
Sbjct: 64  ACQHCENPACKKVCPTGATYKDDAGRVEIAYDKCIGCRMCMAACPYNA 111


>gi|260888133|ref|ZP_05899396.1| putative polyferredoxin [Selenomonas sputigena ATCC 35185]
 gi|260862162|gb|EEX76662.1| putative polyferredoxin [Selenomonas sputigena ATCC 35185]
          Length = 415

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
             C +VCP   F  G      HPD CI+CG+C   CP  A++
Sbjct: 79  RACEDVCPAGAFRWG----VPHPDLCIECGLCTAVCPAAAVE 116



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 9   CILCKHTDCVEVCPVDCF---YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV +CP        EGE+F LA  P  C  CG+C   CP  A++    P  +
Sbjct: 327 CNACGF--CVRLCPHGALAAEIEGEDFVLAFTPQLCTACGLCTARCPKSALRLAASPTAK 384

Query: 65  LW 66
            W
Sbjct: 385 RW 386


>gi|242238811|ref|YP_002986992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
 gi|242130868|gb|ACS85170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 233

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C +  CV  CP    Y       + +H D C+ C  C   CP     I P++    
Sbjct: 98  SCQHCDNPPCVSACPTGASYKDPATGIVDVHHDRCVGCRYCLAACPYHVRFIHPESRTAD 157

Query: 64  E 64
           +
Sbjct: 158 K 158


>gi|224369388|ref|YP_002603552.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692105|gb|ACN15388.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 519

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHP----DECIDCGVCEPECPV--DAIK 56
             C    C EVCP    Y  +     HP    D CI CG C+  CPV   AI 
Sbjct: 434 RDCG--ACAEVCPTHAVYTIKENNVHHPRLAPDACIGCGACQQVCPVLPKAIH 484



 Score = 42.4 bits (99), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C    C  VC   C +   +   I    C+ C  C   CP  AI+ 
Sbjct: 238 CNGC--AKCQRVCRAACIH--PSLGEIDGSRCVACFDCMDVCPEQAIQY 282



 Score = 37.4 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 13/60 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECI-DCGVCEPECPVDAIKP 57
           C  C    CV VCP      G N           L  +   C   C  C   CP  AI P
Sbjct: 349 CTACL--ACVAVCPERVILPGINNFGLAGIIQPGLDFNRSRCAYTCNACTQVCPSGAIVP 406



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 17  CVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  +CPV  F+     +     +I    C  C  C+  C    I P
Sbjct: 210 CNTLCPVGAFFSLFSRKALFRFSIDKTRCNGCAKCQRVCRAACIHP 255


>gi|223038427|ref|ZP_03608721.1| 4Fe-4S binding domain protein [Campylobacter rectus RM3267]
 gi|222880284|gb|EEF15371.1| 4Fe-4S binding domain protein [Campylobacter rectus RM3267]
          Length = 228

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV VCP    +  E      ++ D+CI C  C   CP D
Sbjct: 98  SCQQCQDAPCVSVCPTKACHKDEKTGITTMNTDDCIACKYCIVACPYD 145


>gi|239616973|ref|YP_002940295.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
          olearia TBF 19.5.1]
 gi|239505804|gb|ACR79291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
          olearia TBF 19.5.1]
          Length = 166

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDT 59
          C  CK+  CV+ CP D      +      +  C+ C  C   CP   + P+T
Sbjct: 45 CRQCKNAHCVKACPKDALERQPDGTVKRYNLLCVGCKSCVLACPFGTLFPET 96


>gi|154498821|ref|ZP_02037199.1| hypothetical protein BACCAP_02812 [Bacteroides capillosus ATCC
           29799]
 gi|150272211|gb|EDM99415.1| hypothetical protein BACCAP_02812 [Bacteroides capillosus ATCC
           29799]
          Length = 316

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C  CK     +VCP+      +  L+I  D C +CG C  +C  DA
Sbjct: 171 EECNGCKKCGVAQVCPMGAAKLEDGELSIDKDVCNNCGRCIDKCYFDA 218



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 18  VEVCPVDCFYEGENFLAI--------HPDECIDCGVC--EPECPVDAIKPDT 59
           V  CP +C     N L I         P+EC  C  C     CP+ A K + 
Sbjct: 143 VGGCPNNCVKPDLNDLGIIGQMVPNFDPEECNGCKKCGVAQVCPMGAAKLED 194


>gi|153207231|ref|ZP_01945995.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918772|ref|ZP_02218858.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           334]
 gi|120576719|gb|EAX33343.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917496|gb|EDR36100.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           334]
          Length = 163

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C   CP        G              I   +CI+CG CE  CPVDAI
Sbjct: 61  ERCIACKL--CEAFCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAI 118


>gi|159901495|ref|YP_001547742.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894534|gb|ABX07614.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 330

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 23/123 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-------------LAIHPDECIDCGVCEPECPVD 53
           E C  C    C  +CP    +  +                 +  D C+ CG C   CP D
Sbjct: 87  ELCTSC--FQCERICPPQVIHITQAKDPATGKPVPAAANFVLEYDTCMSCGYCAEVCPFD 144

Query: 54  AIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQ----KYEKYFSPN 107
           AIK D   E       +++  Y      I+  +   P       VK+    K +      
Sbjct: 145 AIKMDHDFELSTGNHPELDVNYDRLLRPISYYEAIAP--TMWSDVKEQAMKKLQNNIKRR 202

Query: 108 PGG 110
           PG 
Sbjct: 203 PGA 205


>gi|119720693|ref|YP_921188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525813|gb|ABL79185.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 229

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 7   ENCILCKHTDCVEVCP--VDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    CV VC          +    + +   +C+ CG C  ECPV A
Sbjct: 161 DKCIGCG--ACVSVCASIAGAIKWRKSGRKVEVDAAKCLGCGACVKECPVGA 210



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 12  CKHTDCVEVCPVDCFYEGEN------FLAIHPDECIDCGVCEPECP--VDAIK 56
                CV+VCP                  +  D+CI CG C   C     AIK
Sbjct: 129 VLDFKCVDVCPTGALQRLPKEKAKMGTALLDKDKCIGCGACVSVCASIAGAIK 181


>gi|89900968|ref|YP_523439.1| putative glutamate synthase (NADPH) small subunit [Rhodoferax
           ferrireducens T118]
 gi|89345705|gb|ABD69908.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rhodoferax ferrireducens
           T118]
          Length = 541

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 9   CILCKHT----DCVEVCPVDC-FYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ C +     +C  VCP +     G       + D C  CG+C  ECP  AIK   E 
Sbjct: 482 CLSCGNCFECDNCYGVCPDNAVIKHGPGKGFDFNYDYCKGCGICVSECPCGAIKMVPED 540


>gi|83716728|ref|YP_438907.1| formate dehydrogenase subunit beta [Burkholderia thailandensis
           E264]
 gi|167615424|ref|ZP_02384059.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           Bt4]
 gi|257141997|ref|ZP_05590259.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
 gi|83650553|gb|ABC34617.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
          Length = 304

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYNNGIVDFHEEHCIGCGYCVTGCPFN 146


>gi|68349559|gb|AAY96662.1| formate dehydrogenase beta subunit [uncultured bacterium BAC10-4]
          Length = 290

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
           + C+ C+   C+  CP      + EN +  + P +CI C +C   CP +  + 
Sbjct: 98  DQCLHCEDPGCLAACPAPGAIVQYENGIVDVDPQKCIGCQLCLTGCPFNVPRF 150


>gi|325274390|ref|ZP_08140480.1| cytochrome c oxidase cbb3 type, accessory protein FixG [Pseudomonas
           sp. TJI-51]
 gi|324100475|gb|EGB98231.1| cytochrome c oxidase cbb3 type, accessory protein FixG [Pseudomonas
           sp. TJI-51]
          Length = 471

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TLCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|313894091|ref|ZP_07827657.1| putative ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441655|gb|EFR60081.1| putative ferredoxin [Veillonella sp. oral taxon 158 str. F0412]
          Length = 75

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + + C+ C    C E CPV C  EG     I    CI CG C   CPV A+K
Sbjct: 6  FTIDDTCVKCG--ACAEDCPVQCITEGMTRFNIG-TGCIGCGDCYSICPVGAVK 56


>gi|303248406|ref|ZP_07334666.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio fructosovorans
           JJ]
 gi|302490204|gb|EFL50122.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio fructosovorans
           JJ]
          Length = 187

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C   CPV+C      EG +         I+   CI CG+CE  CP  AI+
Sbjct: 66  ERCVAC--YLCSGACPVNCISMQSEEGPDGRRRAAWFRINFARCIYCGLCEEACPTLAIQ 123


>gi|282900395|ref|ZP_06308345.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii
          CS-505]
 gi|281194708|gb|EFA69655.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii
          CS-505]
          Length = 528

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 1  MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M Y++   NC  C    C   CP        N   I P  C +C G      C   CP  
Sbjct: 1  MPYIIPNKNCNRCD--KCRPQCPTGAIKIENNEYWIDPCLCNNCEGYYPEPQCVIACPTQ 58

Query: 54 AIKP 57
          +  P
Sbjct: 59 SPIP 62



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 32 FLAIHPDE-CIDCGVCEPECPVDAIKPDTEPGL 63
             I P++ C  C  C P+CP  AIK +     
Sbjct: 1  MPYIIPNKNCNRCDKCRPQCPTGAIKIENNEYW 33


>gi|261880458|ref|ZP_06006885.1| electron transport complex [Prevotella bergensis DSM 17361]
 gi|270332797|gb|EFA43583.1| electron transport complex [Prevotella bergensis DSM 17361]
          Length = 313

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            CI C    C++ C  D      N   I   +C  C  C  ECP +AI
Sbjct: 223 ACIGCG--KCLKACRFDAINIENNLSYIDYSKCKLCTKCVDECPTNAI 268



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 21/84 (25%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF---YEGENFLAI-----HPDE-----------CIDCG 44
           VV + C  C    CV+ CP        +G     I     + D+           CI CG
Sbjct: 171 VVDDLCTSCG--ACVKACPRHIIELRKKGPKNRRIYVQCVNMDKGAVARKACQVACIGCG 228

Query: 45  VCEPECPVDAIKPDTEPGLELWLK 68
            C   C  DAI  +       + K
Sbjct: 229 KCLKACRFDAINIENNLSYIDYSK 252


>gi|220904771|ref|YP_002480083.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869070|gb|ACL49405.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 418

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 18/117 (15%)

Query: 1   MTYVVTEN--CILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
           M +V  ++  CI C    C E CP    Y   G      +P+ CI+CG C   CP  AI 
Sbjct: 25  MLFVQIDDKKCIGCDL--CQEYCPTGAVYGETGLAHTVAYPEPCINCGQCLTHCPEMAIY 82

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGKNT 113
                  + W+    E   +  +   K  ++P+ A    V+    + F   PG   T
Sbjct: 83  -----ETQTWVP---ELQEKLKDKNVKCIAMPAPA----VRYALGEAFGLPPGTVTT 127



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 19 EVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDT 59
           V P     +G+  L   I   +CI C +C+  CP  A+  +T
Sbjct: 14 HVPPRGA--DGDKMLFVQIDDKKCIGCDLCQEYCPTGAVYGET 54


>gi|168184969|ref|ZP_02619633.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|237793330|ref|YP_002860882.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
 gi|182671973|gb|EDT83934.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|229262235|gb|ACQ53268.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
          Length = 387

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D    EG+     +  +CI C  C+  CP  AI+
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKEGKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPTLIEEKCIGCNRCAEVCP 332


>gi|164686951|ref|ZP_02210979.1| hypothetical protein CLOBAR_00577 [Clostridium bartlettii DSM
           16795]
 gi|164603836|gb|EDQ97301.1| hypothetical protein CLOBAR_00577 [Clostridium bartlettii DSM
           16795]
          Length = 381

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 9   CILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  CK   C + C  +   F +    ++I+PD C  CG C   C  DAI  +    +E  
Sbjct: 202 CRGCK--KCQKECANNGLVFNKETKKMSINPDTCAGCGRCIGACNFDAIAFENYTAVEN- 258

Query: 67  LKINSEYAT 75
             +N   A 
Sbjct: 259 --LNCRMAE 265


>gi|157963755|ref|YP_001503789.1| radical SAM domain-containing protein [Shewanella pealeana ATCC
          700345]
 gi|157848755|gb|ABV89254.1| Radical SAM domain protein [Shewanella pealeana ATCC 700345]
          Length = 292

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECP 51
           Y + + C  C    CV  CPV+        +G++ +    D+C  C +C   CP
Sbjct: 40 PYTI-DMCDSCGD--CVATCPVNALSLNLDKQGKSKIVWDSDKCTQCDICLSTCP 91


>gi|221068604|ref|ZP_03544709.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni KF-1]
 gi|264677206|ref|YP_003277112.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni CNB-2]
 gi|299530750|ref|ZP_07044165.1| NADH dehydrogenase subunit I [Comamonas testosteroni S44]
 gi|220713627|gb|EED68995.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni KF-1]
 gi|262207718|gb|ACY31816.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni CNB-2]
 gi|298721266|gb|EFI62208.1| NADH dehydrogenase subunit I [Comamonas testosteroni S44]
          Length = 169

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 68  ERCIACKL--CEAVCPAMAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 124



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 68 ERCIACKLCEAVCPAMAITIESD 90


>gi|73540672|ref|YP_295192.1| NADH dehydrogenase subunit I [Ralstonia eutropha JMP134]
 gi|115502538|sp|Q473T5|NUOI_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|72118085|gb|AAZ60348.1| NADH-quinone oxidoreductase, chain I [Ralstonia eutropha JMP134]
          Length = 163

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVDA+
Sbjct: 62  ERCIACKL--CEAVCPALAITIESDVRADGTRRTTRYDIDLTKCIFCGFCEEACPVDAV 118



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 62 ERCIACKLCEAVCPALAITIESD 84


>gi|91978474|ref|YP_571133.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91684930|gb|ABE41232.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            C  C +  C  +   D ++EG + + I P  CI C +C   C +D IK  T P
Sbjct: 551 ACQSCMNLGCPALTWSDEWFEGRHRVKIDPASCIGCTLCAQVCTIDCIKIATPP 604


>gi|89896155|ref|YP_519642.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219670571|ref|YP_002461006.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89335603|dbj|BAE85198.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219540831|gb|ACL22570.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 179

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHP-DECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C+   CV  CP        E+ + IH  D+CI C +C   CP  A +   E G
Sbjct: 57  SCNHCEEPKCVANCPTGALEKRKEDGIVIHHYDKCIGCRLCTWSCPYGAPQYREEEG 113


>gi|332285604|ref|YP_004417515.1| formate dehydrogenase, beta subunit [Pusillimonas sp. T7-7]
 gi|330429557|gb|AEC20891.1| formate dehydrogenase, beta subunit [Pusillimonas sp. T7-7]
          Length = 299

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP D  +
Sbjct: 99  DGCMHCEDPGCLKACPAPGAIIQYNNGIVDFHEENCIGCGYCITGCPFDVPR 150



 Score = 40.1 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ENCI C +  C+  CP D     + +N       +C  C           C   CP  AI
Sbjct: 132 ENCIGCGY--CITGCPFDVPRISKKDNKAY----KCTLCSDRVAVGQEPACVKTCPTGAI 185

Query: 56  KPDTEPGLEL 65
              T+  ++ 
Sbjct: 186 VFGTKEDMQK 195


>gi|317401939|gb|EFV82543.1| electron transport complex protein [Achromobacter xylosoxidans C54]
          Length = 148

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           CI C  T C++ CPVD        +  + PD C  C +C   CPVD I+
Sbjct: 86  CIGC--TLCIQACPVDAIVGANKHMHTVLPDWCTGCDLCVAPCPVDCIE 132


>gi|253742091|gb|EES98943.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
          [Giardia intestinalis ATCC 50581]
          Length = 277

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIH-PDECIDCGVCEPECPVDAI 55
          V  + CI C    CV+ CP  C    +    L     + CI CG C   C   AI
Sbjct: 7  VDEDLCIGCNV--CVQGCPTQCIEVNKKTRKLVFRAKEACISCGHCASVCRTAAI 59



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIK 56
           F  +  D CI C VC   CP   I+
Sbjct: 3  RFPEVDEDLCIGCNVCVQGCPTQCIE 28


>gi|237738128|ref|ZP_04568609.1| pyruvate oxidoreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229420008|gb|EEO35055.1| pyruvate oxidoreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 100

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            + ENC  C    CV  CP       EG+  L    D C  CGVC   CP +AI+   E
Sbjct: 45  FIAENCKQCLL--CVPCCPDSAIPVKEGKR-LEFDMDHCKGCGVCSKACPFNAIEMVKE 100


>gi|168181125|ref|ZP_02615789.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182668040|gb|EDT80019.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 387

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D    EG+     +  +CI C  C+  CP  AI+
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVIDMIKKEGKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPTLIEEKCIGCNRCAEVCP 332


>gi|171186294|ref|YP_001795213.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170935506|gb|ACB40767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 368

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V E C LC    CV VCP D        L + P  CI CGVC  +CP
Sbjct: 252 VAEGCTLCG--ACVNVCPTDALSIKGFELRLTPALCIACGVCAEKCP 296



 Score = 46.3 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 2   TYVVTEN-CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDT 59
           T VV +  CI C    C + CP   F   E   + +  D C+DCG+C   CPV+A+K  +
Sbjct: 76  TVVVDQAKCIWCG--MCAKSCPATAFEYVERRSIRVMYDRCVDCGLCNALCPVEAVKMPS 133

Query: 60  EPG 62
            P 
Sbjct: 134 LPD 136


>gi|52549204|gb|AAU83053.1| uncharacterized anaerobic dehydrogenase [uncultured archaeon
           GZfos26D6]
          Length = 396

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 7   ENCILCKHTDCVEVC-------PVDCFYEGENFLAIHP-----DECIDCGVCEPECPVDA 54
           E CILC    C  VC        ++    G       P     D+CI CG C   CP DA
Sbjct: 49  ERCILCGL--CTRVCDELVGVSAINVISRGVEREVGTPYKELSDDCIGCGSCALVCPTDA 106

Query: 55  IKPDT---EPGLELWLKINSEY 73
           IK +        E   ++ ++Y
Sbjct: 107 IKREKNIYPTTAEDIAELEAKY 128



 Score = 34.0 bits (77), Expect = 7.6,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL 33
           +++CI C    C  VCP D     +N  
Sbjct: 89  SDDCIGCG--SCALVCPTDAIKREKNIY 114


>gi|20092967|ref|NP_619042.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
 gi|19918282|gb|AAM07522.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
          Length = 346

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-----EGENFLAIH--PDECIDCGVCEPECPVDAI 55
           + C  C    CVE CP +  +      GE    I   PD CI CG C   CPV+AI
Sbjct: 179 DTCQTC--HTCVETCPTNAIFNKKAKPGEKVEKISHRPDACIYCGACAVSCPVNAI 232



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-------EGENFLA----IHPDECIDCGVCEPECPV 52
            V E C+ C    C ++CP  C         +G+  L     I  + C+ CG C   CPV
Sbjct: 104 TVNERCVHCGL--CEDICPQGCIEVTREISPDGKLKLVGKTDIDTECCVHCGWCAAVCPV 161

Query: 53  DAIKPDTE 60
           +AI  +  
Sbjct: 162 NAIVVEKP 169



 Score = 41.3 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 14/62 (22%)

Query: 7  ENCILCKHTDCVEVCP--------VDCFYEG---ENFLAIHP-DECIDCGVCEPECPVDA 54
          E CI C    CV+ CP        V     G    NFL +   +ECI CG+C   CP  A
Sbjct: 23 ERCIGCG--TCVQACPKGILAVGAVGAVVRGLLDANFLEMKEREECIACGICARVCPTGA 80

Query: 55 IK 56
          ++
Sbjct: 81 LE 82



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           TE C+ C    C  VCPV+        E       D C  C  C   CP +AI 
Sbjct: 146 TECCVHCGW--CAAVCPVNAIVVEKPFEGRWTGSEDTCQTCHTCVETCPTNAIF 197



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 34/80 (42%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---------------------------- 38
           + CI C    C   CPV+         AI PD                            
Sbjct: 215 DACIYCG--ACAVSCPVNAI--DVRKTAILPDVEKKSVLEKKLLEAPVPEALLRTRLETD 270

Query: 39  --ECIDCGVCEPECPVDAIK 56
              C+ CG C   CPV+A+ 
Sbjct: 271 EYACLGCGNCVIVCPVNALY 290



 Score = 33.6 bits (76), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 22/68 (32%)

Query: 8   NCILCKHTDCVEVCPVDCFY------------------EGENFL--AIHPDECIDCGVCE 47
            C+ C   +CV VCPV+  Y                  E +N +   ++ D C   G C 
Sbjct: 273 ACLGCG--NCVIVCPVNALYSRELASGYLNDMDEKALLEVKNGIISVVNQDVCGADGACA 330

Query: 48  PECPVDAI 55
             CPV+AI
Sbjct: 331 MICPVNAI 338


>gi|15605666|ref|NP_213041.1| dimethylsulfoxide reductase chain B [Aquifex aeolicus VF5]
 gi|2982814|gb|AAC06437.1| dimethylsulfoxide reductase chain B [Aquifex aeolicus VF5]
          Length = 170

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
           NC  C    CV  CP       E +  + +    CI C  C   CP  AI
Sbjct: 57  NCFHCDPAPCVVACPTSAMRKREKDGIVYVEQTLCIGCKACIIACPYGAI 106


>gi|312074026|ref|XP_003139785.1| ATP-binding cassette subfamily E [Loa loa]
 gi|307765049|gb|EFO24283.1| ATP-binding cassette subfamily E [Loa loa]
          Length = 619

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPV-----DCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
          + C    C    C + CPV      C     N     I    CI CG+C  +CP +AIK
Sbjct: 23 DRCKPKNCG-LACKKSCPVVRMGKQCIVVESNSKMAEISETLCIGCGICVKKCPYEAIK 80


>gi|296126262|ref|YP_003633514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
 gi|296018078|gb|ADG71315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Brachyspira
           murdochii DSM 12563]
          Length = 275

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T  C  CK   C  VCP+      +    +   +CI CG C  +CP      D E
Sbjct: 200 VDTSKCTNCK--TCAHVCPLASIDFDDITKYV--GKCIKCGACIKKCPEHCRYYDDE 252


>gi|148643126|ref|YP_001273639.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445363|ref|ZP_03607878.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350076|ref|ZP_05975493.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|148552143|gb|ABQ87271.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434928|gb|EEE42093.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860862|gb|EFC93160.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 471

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +T+ CI C    C EVCP +        +++  D+CI C  C   CPV+AI
Sbjct: 344 ITDECISCG--ICCEVCPKEAITLHRGTISVDLDKCILCENCGVYCPVNAI 392



 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C+ C    C ++CP D   +      +  D+C  CG C+  CP +A   +
Sbjct: 412 QLCMHCGL--CYDICPYDAINKNNGKFEVDEDKCKYCGACKNACPANAFMFE 461



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHPDECIDCGVCEPECPVDAI 55
           + CILC+  +C   CPV+             + F  I    C+ CG+C   CP DAI
Sbjct: 375 DKCILCE--NCGVYCPVNAIPRTTMHKKEIVDGFCFIEQQLCMHCGLCYDICPYDAI 429



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 8  NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          +C+ C    C + CP +  +        +   +C  CG+C   CP+D IK + 
Sbjct: 32 SCLTCGL--CYKNCPSNAIFINSYGGYVVDRAKCSGCGMCMYNCPIDNIKIED 82



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C + CP        +        C DCG+C   CP  A
Sbjct: 152 DRCIYCG--RCEKYCPTGTIQVTLDR---DEGICSDCGLCSDVCPNGA 194


>gi|144897737|emb|CAM74601.1| 4Fe-4S ferredoxin, iron-sulfur binding [Magnetospirillum
          gryphiswaldense MSR-1]
          Length = 79

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+  +TE+C  C    CV VCP      GE    I  D C +C G      C+  CP D 
Sbjct: 1  MSLKITEDCTSCD--ACVSVCPNTAISAGEVIYVIEEDRCTECVGAEDTPQCQLVCPADC 58

Query: 55 IKPDTEPGLEL 65
          I   TE   + 
Sbjct: 59 IVIGTEETPDQ 69


>gi|83590609|ref|YP_430618.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83573523|gb|ABC20075.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 205

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          V T+ C  C    C  VCPV           + P+ C  C  CE  CP
Sbjct: 10 VDTDKCKGC--RTCERVCPVLAIKVVNRKAVVDPERCRGCANCEQRCP 55


>gi|33151579|ref|NP_872932.1| nitrate reductase, Fe-S protein [Haemophilus ducreyi 35000HP]
 gi|33147799|gb|AAP95321.1| nitrate reductase, Fe-S protein [Haemophilus ducreyi 35000HP]
          Length = 225

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    +   N   + +  D C+ C  C   CP     I P+ +  
Sbjct: 93  QSCQHCTNAPCVAVCPTGASFVDPNTGIVDVDSDLCVGCQYCIAVCPYRVRFIHPEKKSA 152

Query: 63  LE 64
            +
Sbjct: 153 DK 154


>gi|26990950|ref|NP_746375.1| iron-sulfur cluster-binding protein [Pseudomonas putida KT2440]
 gi|24985973|gb|AAN69839.1|AE016623_1 iron-sulfur cluster-binding protein [Pseudomonas putida KT2440]
          Length = 471

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|325970111|ref|YP_004246302.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain
          protein [Spirochaeta sp. Buddy]
 gi|324025349|gb|ADY12108.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Spirochaeta sp. Buddy]
          Length = 388

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 13/86 (15%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          TE+C  C    C+++CP       E+     +  +   +C++C  C   CP +  +    
Sbjct: 7  TESCTGCGL--CLDICPCYAISMKEDERGFIYPFVDDSKCVNCKKCIQNCPQNQTEDKGM 64

Query: 61 PGLELWLKINSEYATQWPNITTKKES 86
               +   N         IT KK S
Sbjct: 65 VIHRTYAAWNKN------RITRKKAS 84


>gi|304399200|ref|ZP_07381067.1| nitrate reductase, beta subunit [Pantoea sp. aB]
 gi|304353254|gb|EFM17634.1| nitrate reductase, beta subunit [Pantoea sp. aB]
          Length = 514

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPGGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|298369135|ref|ZP_06980453.1| formate dehydrogenase, beta subunit [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283138|gb|EFI24625.1| formate dehydrogenase, beta subunit [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 306

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      + +N +   H + CI CG C   CP +
Sbjct: 97  DGCMHCADPGCLKACPSPGAIIQYQNGIVDFHQENCIGCGYCIAGCPFN 145


>gi|283787438|ref|YP_003367303.1| formate dehydrogenase-O, iron-sulfur subunit [Citrobacter rodentium
           ICC168]
 gi|282950892|emb|CBG90569.1| formate dehydrogenase-O, iron-sulfur subunit [Citrobacter rodentium
           ICC168]
          Length = 300

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155


>gi|229597845|pdb|3EXY|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin V13g
          Variant From Allochromatium Vinosum
          Length = 82

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58
          +T+ CI C    C   CP     +G+    I P  C +C        C   CPVD I  D
Sbjct: 4  ITDECINCDG--CEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCIIKD 61



 Score = 34.0 bits (77), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C  CEPECP  AI    E
Sbjct: 6  DECINCDGCEPECPNGAISQGDE 28


>gi|152993563|ref|YP_001359284.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
 gi|151425424|dbj|BAF72927.1| 4Fe-4S ferredoxin [Sulfurovum sp. NBC37-1]
          Length = 83

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C E CP +   E +    I  D C +C        C   CPVD 
Sbjct: 1  MALLITDECIACD--ACREECPNEAIEENDPIYIIDADRCTECVGHFDEPQCIAVCPVDC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IISDPD 64


>gi|197117854|ref|YP_002138281.1| electron transfer flavoprotein subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197087214|gb|ACH38485.1| electron transfer flavoprotein, alpha subunit [Geobacter
           bemidjiensis Bem]
          Length = 447

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V   CI C    C   CPV      E    +I   +CI C  C   C   A++    P  
Sbjct: 17  VAGKCIACGAR-CESSCPVSGIQMSEAGEPSIVDGKCIGCAKCVKVCAAGALEMFYTPEE 75

Query: 64  ELWLKINSEYATQWPNITT-KKESLPSAAKMDGVKQKYEKY 103
                   E   QW       +E L  A K   ++ K  +Y
Sbjct: 76  L-------ELLKQWEAQHGAVEEELDPAEK--ELRAKLAQY 107


>gi|167034819|ref|YP_001670050.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas putida
           GB-1]
 gi|166861307|gb|ABY99714.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas putida
           GB-1]
          Length = 472

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 270 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 305


>gi|332305199|ref|YP_004433050.1| cytochrome c oxidase accessory protein CcoG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172528|gb|AEE21782.1| cytochrome c oxidase accessory protein CcoG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 457

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV+VCPV     +G  +      ECI+CG+C   C
Sbjct: 260 DCVDCGL--CVDVCPVGIDIRQGLQY------ECINCGLCADAC 295



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 24/65 (36%)

Query: 13  KHTDCVEVCPVDCF--------------------YEGENFLAIHPDE----CIDCGVCEP 48
           K   C+ +CP   F                      G   +     E    C+DCG+C  
Sbjct: 210 KEKMCLHICPYARFQSVMFNNSTSLMTYDHTRGENRGPRKIKAQKSEELGDCVDCGLCVD 269

Query: 49  ECPVD 53
            CPV 
Sbjct: 270 VCPVG 274


>gi|325958593|ref|YP_004290059.1| hypothetical protein Metbo_0837 [Methanobacterium sp. AL-21]
 gi|325330025|gb|ADZ09087.1| protein of unknown function DUF166 [Methanobacterium sp. AL-21]
          Length = 313

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 2   TYVVTENC---ILCKHTDCVEVCPVDCFYEG------ENFLAIHPDECIDCGVCEPECPV 52
             V  + C   I C   +C++VCP     +       E    I+P  C  C +C  ECP 
Sbjct: 242 AVVDKDACMGGIDC-DHNCIDVCPNVKIGDDTVTVDEEKKAVINPVSCGCCEICVRECPY 300

Query: 53  DAIK 56
            AI+
Sbjct: 301 GAIE 304


>gi|325970945|ref|YP_004247136.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
 gi|324026183|gb|ADY12942.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Spirochaeta sp. Buddy]
          Length = 175

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 16 DCVEVCPVDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C   CPV     G    N   I  ++C  CG+C   CP  AI 
Sbjct: 52 PCETACPVHAITVGSEITNLPVIDIEKCTGCGLCVAACPGLAIY 95


>gi|320449682|ref|YP_004201778.1| NADH-quinone oxidoreductase subunit I [Thermus scotoductus SA-01]
 gi|320149851|gb|ADW21229.1| NADH-quinone oxidoreductase, subunit I [Thermus scotoductus SA-01]
          Length = 182

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 51  EKCIGC--SLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEAC 108

Query: 51  PVDAIKPDTEPGLELW 66
           P  AI    +  +  +
Sbjct: 109 PTGAIVLGYDFEMADY 124


>gi|300853895|ref|YP_003778879.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
 gi|300434010|gb|ADK13777.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
          Length = 462

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP-VDAIKPDTE 60
          E C  C    C +VCPVD   EGE      I+ ++C+ CG C   C    ++  D  
Sbjct: 13 ELCTGC--RRCADVCPVDAI-EGEQGKPQKINTEKCVMCGQCIQVCKGYQSVYDDVP 66



 Score = 41.3 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           + I  + C  C  C   CPVDAI+ +         KIN+E
Sbjct: 7  MINIDEELCTGCRRCADVCPVDAIEGEQGKPQ----KINTE 43


>gi|224539802|ref|ZP_03680341.1| hypothetical protein BACCELL_04712 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518582|gb|EEF87687.1| hypothetical protein BACCELL_04712 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 438

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 16/77 (20%)

Query: 4   VVTENCILCKHT----DCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + ENCI+ +       C E CP        F +G     I  + C+ CG CE  CP   
Sbjct: 346 FIEENCIVYRDGTSCGACSEHCPTQALSMIPFKDGLTIPHIDTEICVGCGGCEYVCPA-- 403

Query: 55  IKPDTEPGLELWLKINS 71
                 P   ++++ N+
Sbjct: 404 -----RPFRAVYIEGNA 415



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           TE C  C    C   C   C    E    I    C+DC  C  EC  +A+   T    E 
Sbjct: 156 TEKCNHCGL--CATKCKASCINSPEQT--IDYSRCVDCFDCLGECRQNALSYTTPLKTEK 211



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 20/62 (32%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                   +    + CI       CG C   CP 
Sbjct: 315 DCTVCGD-----VCPNGAILPLTKEQKHLTQMGKVVFIEENCIVYRDGTSCGACSEHCPT 369

Query: 53  DA 54
            A
Sbjct: 370 QA 371


>gi|89893277|ref|YP_516764.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332725|dbj|BAE82320.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 182

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C++ +CV VCP   + + ++ + +H P  C  CG C   CP    K 
Sbjct: 56  YFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFHVPKY 111


>gi|113968448|ref|YP_732241.1| formate dehydrogenase subunit beta [Shewanella sp. MR-4]
 gi|113883132|gb|ABI37184.1| formate dehydrogenase beta subunit [Shewanella sp. MR-4]
          Length = 304

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
            C+ C    C++ C       +  N       D+CI CG C   CP D
Sbjct: 98  ACMHCADPACLKACSTSGAIVQHANGTVDFDSDKCIGCGYCACACPFD 145


>gi|325958247|ref|YP_004289713.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Methanobacterium sp. AL-21]
 gi|325329679|gb|ADZ08741.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanobacterium sp. AL-21]
          Length = 80

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          E CI C+  +CV  CP  C    +    I  D C  CG+C  ECPV AIK + E
Sbjct: 32 ETCIDCE--NCVMFCPEGCI---DKNYDIDYDYCKGCGICAEECPVKAIKMERE 80


>gi|303244683|ref|ZP_07331015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484991|gb|EFL47923.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 180

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 15/71 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYE--------GENFL-----AIHPDECIDCGVCEPEC 50
           V  E CI C    C   CP  C            EN+       I+ ++C+ C  C   C
Sbjct: 60  VFNELCIGCGG--CANACPTGCIEMVKIEPVKITENYTKEYIPVINSEKCVYCLYCHDFC 117

Query: 51  PVDAIKPDTEP 61
           PV +I  +  P
Sbjct: 118 PVFSIFNEISP 128


>gi|294142319|ref|YP_003558297.1| iron-sulfur cluster-binding protein [Shewanella violacea DSS12]
 gi|293328788|dbj|BAJ03519.1| iron-sulfur cluster-binding protein [Shewanella violacea DSS12]
          Length = 507

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 295 DCIDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDAC 330



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CP  
Sbjct: 296 CIDCNLCVDVCPTG 309


>gi|257459873|ref|ZP_05624979.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268]
 gi|257442725|gb|EEV17862.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268]
          Length = 235

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C+   CV+VCP    +  E      ++ D+CI C  C   CP D
Sbjct: 105 SCQQCEDAPCVKVCPTKACHKDEKTGITTMNTDDCIACKYCIVACPYD 152


>gi|237711984|ref|ZP_04542465.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454679|gb|EEO60400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 508

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPECP 51
           + +NCI         +C   CP                     ++ + CI CG CE  CP
Sbjct: 431 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPEDENDESSPKIPVVNTERCIGCGACENLCP 490

Query: 52  V---DAIKPD 58
                AI  +
Sbjct: 491 ARPFSAIYVE 500



 Score = 40.9 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 17/68 (25%)

Query: 13  KHTDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPVDAIK- 56
           K   C EVCP D  +                     CI       CG C   CP  AI+ 
Sbjct: 399 KCAKCAEVCPTDAIHLTSLAEKSAIQIGHAVWIAQNCIVNTDKVSCGNCARHCPTGAIQM 458

Query: 57  -PDTEPGL 63
            P+ E   
Sbjct: 459 IPEDENDE 466



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C  DAIK 
Sbjct: 221 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQDAIKY 268



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDE------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP       G+    + P+       C   C  C   CP DAI 
Sbjct: 357 AQHCTAC--QLCVSVCPNQVLRPSGDLKRLMQPEMSYERGYCRPKCAKCAEVCPTDAIH 413


>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
 gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
          Length = 595

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           V  E C  C    C + CP D     +  +  I  ++CI C  C   CP DAI 
Sbjct: 544 VDPELCKRCGL--CHKGCPADAIIWKKKQVAVIDKEKCIKCMSCYARCPFDAIF 595



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP            + P+ C  CG+C   CP DAI
Sbjct: 531 CPAK-ICPDLVKFEVDPELCKRCGLCHKGCPADAI 564


>gi|222111080|ref|YP_002553344.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           ebreus TPSY]
 gi|221730524|gb|ACM33344.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           ebreus TPSY]
          Length = 212

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ EN CI C  T C++ CP D            I P  C  C +C P CPVD I+ +  
Sbjct: 84  VIDENWCIGC--TLCLKACPTDAILGINKRMHTVIAP-HCTGCELCLPACPVDCIRMENA 140

Query: 61  PGL 63
            G 
Sbjct: 141 SGQ 143


>gi|167762191|ref|ZP_02434318.1| hypothetical protein BACSTE_00543 [Bacteroides stercoris ATCC
           43183]
 gi|167699834|gb|EDS16413.1| hypothetical protein BACSTE_00543 [Bacteroides stercoris ATCC
           43183]
          Length = 509

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 5   VTENCILCKHT----DCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPECP 51
           + ENCI         +C   CPV             +      ++ + CI CG CE  CP
Sbjct: 432 IKENCICITDKVECGNCARHCPVGAIQMVASDSGNPQSPKIPVVNTERCIGCGACENLCP 491

Query: 52  V---DAIKPD 58
                AI  +
Sbjct: 492 ARPFSAIYVE 501



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 17/80 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIKP 57
            ++C  C    CV VCP        +   +   E       C  +C  C   CP  AI+P
Sbjct: 358 AQHCTAC--QLCVAVCPNQVLRPSSDLTRLMQPEMSYERGYCRPECTKCSEVCPAGAIRP 415

Query: 58  DTEPG-------LELWLKIN 70
            T+           +W+K N
Sbjct: 416 ITKADKSAIQIGHAVWIKEN 435



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           TE C  C    C   C   C         I    C+ C  C  +C   AI
Sbjct: 225 TEKCNGCGL--CARNCKASCIN--SKTHEIDYSRCVACMDCLDKCRQGAI 270



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 15  TDCVEVCPVD---CFYEGENFL--AIHPDECIDCGVCEPECPVDAI 55
           T C  +CPV     F  G +     I  ++C  CG+C   C    I
Sbjct: 198 TYCNTICPVGTVLGFLSGYSLFKPVIDTEKCNGCGLCARNCKASCI 243


>gi|114777369|ref|ZP_01452366.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1]
 gi|114552151|gb|EAU54653.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1]
          Length = 160

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP         E ++         I   +CI CG+C+  CPVDAI
Sbjct: 59  ERCIACKL--CEVICPAVAILIESAERDDGSRRTTRYDIDFSKCIYCGLCQEACPVDAI 115


>gi|91775254|ref|YP_545010.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus flagellatus
           KT]
 gi|91775398|ref|YP_545154.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methylobacillus flagellatus
           KT]
 gi|91709241|gb|ABE49169.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
           flagellatus KT]
 gi|91709385|gb|ABE49313.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylobacillus
           flagellatus KT]
          Length = 461

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 16/67 (23%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C +  CV VCP            I    CI CG+C   C         P   I+ D
Sbjct: 267 DCIDCNY--CVNVCPTGVDIR--KGFQI---GCISCGLCVDACNQIMDRLKLPHGLIRFD 319

Query: 59  TEPGLEL 65
            +  ++ 
Sbjct: 320 RDENIQE 326


>gi|39997194|ref|NP_953145.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39984084|gb|AAR35472.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|298506208|gb|ADI84931.1| carbon monoxide dehydrogenase-associated iron-sulfur
           cluster-binding oxidoreductase CooF [Geobacter
           sulfurreducens KN400]
          Length = 197

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG-ENFLAI-HPDECIDCGVCEPECPVDAI 55
           +C  C   +C++ CP        EN   I  P  C  C +C   CP DAI
Sbjct: 57  SCRHCDPAECLDACPSGALGRDPENGAVILDPARCKACAMCAMVCPFDAI 106


>gi|20094522|ref|NP_614369.1| fused ferredoxin domain/pyruvate-formate lyase-activating protein
          [Methanopyrus kandleri AV19]
 gi|19887637|gb|AAM02299.1| Ferredoxin domain fused to pyruvate-formate lyase-activating
          enzyme [Methanopyrus kandleri AV19]
          Length = 390

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 15/50 (30%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHP----DECIDCGVCEPECPVDA 54
          C  C +   V  CPV             P    ++C+ CG C P CP  A
Sbjct: 10 CRHCGYCSQVVDCPVG-----------DPLWNREDCVGCGACVPACPYGA 48


>gi|15679380|ref|NP_276497.1| heterodisulfide reductase, subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622491|gb|AAB85858.1| heterodisulfide reductase, subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 669

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENFL---------------AIHPDECIDCG 44
           Y+  + C  C    CVEVCP++    F EG                    I  D CI+C 
Sbjct: 259 YIDEDLCTGCG--SCVEVCPIEMPNYFDEGIGMTKAVYIPFPQAVPLCATIDKDYCIECM 316

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C+  C   A+K D EP  
Sbjct: 317 LCDEICERGAVKHDQEPEE 335



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++ C  C+   C+E+CP       E    ++   C  CG C   CP  A+        ++
Sbjct: 599 SDVCGGCEV--CIELCPFGAISIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFRTEQI 656

Query: 66  WLKINSEYATQ 76
             +I +    Q
Sbjct: 657 MAQIEAALNEQ 667


>gi|85712566|ref|ZP_01043613.1| Iron-sulfur cluster-binding protein [Idiomarina baltica OS145]
 gi|85693557|gb|EAQ31508.1| Iron-sulfur cluster-binding protein [Idiomarina baltica OS145]
          Length = 474

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           CI C    CV+VCP                ECIDCG C   C
Sbjct: 271 CIDC--YMCVQVCPTGIDIRNGLQY-----ECIDCGACIDAC 305



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCFY--------------------EGENFLAIHPDE-----CIDCGVCEPECP 51
           C  +CP   F                      G       P E     CIDC +C   CP
Sbjct: 223 CTHMCPYARFQSAMFDKDTYTVSYDANRGEPRGPRSRKADPAEKGLGHCIDCYMCVQVCP 282

Query: 52  VD 53
             
Sbjct: 283 TG 284


>gi|84502622|ref|ZP_01000741.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
 gi|84389017|gb|EAQ01815.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
          Length = 164

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|114320807|ref|YP_742490.1| sulfite reductase, dissimilatory-type beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227201|gb|ABI57000.1| dissimilatory sulfite reductase beta subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 360

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C P CP   I       L +W+
Sbjct: 206 CERPSVVARCPVAAIRPALVNGKPSLEVDEQKCICCGACYPPCPPMEINDPEHSKLAIWI 265

Query: 68  KINSEYATQWPN 79
             N   A   P 
Sbjct: 266 GGNHSNARGAPT 277


>gi|258405961|ref|YP_003198703.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfohalobium retbaense DSM 5692]
 gi|257798188|gb|ACV69125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfohalobium retbaense DSM 5692]
          Length = 139

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
          C  C +  C  VCP       E    + I  + CI CG+C   CP+  I
Sbjct: 51 CNHCLNAYCQNVCPARAISRDEQTGAVVIDENRCISCGLCAQYCPLGVI 99


>gi|257064775|ref|YP_003144447.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792428|gb|ACV23098.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 204

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVD 53
           C  C++  C+EVCP            + I  + CI C  C   CP  
Sbjct: 59  CQQCENAPCIEVCPTGASQRDPVTGVVIIDRETCIGCKSCLTACPYG 105


>gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis
           SH0165]
 gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone
           oxidoreductase, subunit RnfC [Haemophilus parasuis
           SH0165]
          Length = 666

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDC-------FYEGENF---LAIHPDECIDCGVCEPECP 51
           NCI C  + C + CPV         F   E+       H D CI+CGVC   CP
Sbjct: 378 NCIRC--SSCSDACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP 429


>gi|212691689|ref|ZP_03299817.1| hypothetical protein BACDOR_01184 [Bacteroides dorei DSM 17855]
 gi|212665878|gb|EEB26450.1| hypothetical protein BACDOR_01184 [Bacteroides dorei DSM 17855]
          Length = 510

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECP 51
           + +NCI         +C   CP                     ++ + CI CG CE  CP
Sbjct: 433 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPKDENDESSPKIPVVNTERCIGCGACENLCP 492

Query: 52  V---DAIKPD 58
                AI  +
Sbjct: 493 ARPFSAIYVE 502



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDE------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP       G+    + P+       C  +C  C   CP DAI 
Sbjct: 359 AQHCTAC--QLCVSVCPNQILRPSGDLKRLMQPEMSYERGYCRPECAKCAEVCPTDAIH 415



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C  DAIK 
Sbjct: 223 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQDAIKY 270


>gi|153815271|ref|ZP_01967939.1| hypothetical protein RUMTOR_01505 [Ruminococcus torques ATCC 27756]
 gi|145847333|gb|EDK24251.1| hypothetical protein RUMTOR_01505 [Ruminococcus torques ATCC 27756]
          Length = 803

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---EGENFLA--IHPDECIDCGVCEPECPV 52
           + C  C  + C   CP  C     + E FL   I  + CI C  C+  CPV
Sbjct: 419 DKCCGC--SACAMACPKQCITMVADKEGFLYPQIDQELCIHCNKCQQVCPV 467



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 28  EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
           E E  +    D+C  C  C   CP   I    +    L+ +I+ E 
Sbjct: 409 EIEQLIYDSKDKCCGCSACAMACPKQCITMVADKEGFLYPQIDQEL 454


>gi|19113524|ref|NP_596732.1| iron-sulfur protein [Schizosaccharomyces pombe 972h-]
 gi|74676038|sp|O60102|YOX6_SCHPO RecName: Full=Uncharacterized ABC transporter ATP-binding protein
          C14F5.06
 gi|3184109|emb|CAA19324.1| iron-sulfur protein [Schizosaccharomyces pombe]
          Length = 593

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 4  VVTEN-CI--LCKHTDCVEVCPVD-----CF--YEGENFLAIHPDECIDCGVCEPECPVD 53
          +V+E+ C    C+  +C   CPV      C      +    I    CI CG+C  +CP  
Sbjct: 10 IVSEDKCRPKKCR-QECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCPFG 68

Query: 54 AI 55
          AI
Sbjct: 69 AI 70


>gi|90422214|ref|YP_530584.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90104228|gb|ABD86265.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 606

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 4   VVTENCILCKHTDCVEV-CPV----DCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +VT  C  C    C+ + CP     D ++EG + + I P  CI C +C   C VD IK
Sbjct: 544 IVTGQCTAC--QSCMNLGCPALTWSDQWFEGRHRVKIDPALCIGCTLCAQVCTVDCIK 599


>gi|73748123|ref|YP_307362.1| ferredoxin, iron-sulfur cluster-binding protein [Dehalococcoides
          sp. CBDB1]
 gi|147668813|ref|YP_001213631.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Dehalococcoides sp. BAV1]
 gi|289432200|ref|YP_003462073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dehalococcoides sp. GT]
 gi|73659839|emb|CAI82446.1| ferredoxin, iron-sulfur cluster-binding protein [Dehalococcoides
          sp. CBDB1]
 gi|146269761|gb|ABQ16753.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Dehalococcoides sp. BAV1]
 gi|288945920|gb|ADC73617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dehalococcoides sp. GT]
          Length = 84

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M++ +T++CI C    C   CP     EGE    I P++C +C G      C   CPVD
Sbjct: 1  MSFKITDDCISCG--ACEPECPNKAISEGETIYIIDPEKCSECVGAFDTPQCVEICPVD 57


>gi|194336423|ref|YP_002018217.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308900|gb|ACF43600.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 199

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           C+ C++T C+  CP       ++ +  ++ D CI C  C   CP DA       D +   
Sbjct: 60  CMHCENTPCLSACPTGATSITKDGIVLVNYDRCIGCYACCIACPYDARYAYESEDVDTEK 119

Query: 64  ELWLKI 69
           EL+  +
Sbjct: 120 ELYGDL 125


>gi|269139848|ref|YP_003296549.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Edwardsiella tarda
           EIB202]
 gi|267985509|gb|ACY85338.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Edwardsiella tarda
           EIB202]
 gi|304559687|gb|ADM42351.1| Pyruvate-flavodoxin oxidoreductase [Edwardsiella tarda FL6-60]
          Length = 1193

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 29/73 (39%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------------------------EGENFLAIHPDE 39
           + CI C   +C  VCP                                E    L ++P++
Sbjct: 694 DLCIQCG--NCAFVCPHAAIRAKFYHQDLLDGAPQDFRSAPISARGFPETRYTLQVYPED 751

Query: 40  CIDCGVCEPECPV 52
           C  CG+C   CPV
Sbjct: 752 CTGCGLCVEACPV 764



 Score = 40.5 bits (94), Expect = 0.085,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 37  PDECIDCGVCEPECPVDAIK 56
           PD CI CG C   CP  AI+
Sbjct: 693 PDLCIQCGNCAFVCPHAAIR 712


>gi|225569142|ref|ZP_03778167.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
          15053]
 gi|225161941|gb|EEG74560.1| hypothetical protein CLOHYLEM_05222 [Clostridium hylemonae DSM
          15053]
          Length = 302

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          +E C  C    C  VCP +   E    +      C  CG C   C
Sbjct: 50 SERCAGCG--SCAVVCPQNAVREEAGKMVTDRKLCTGCGTCVDSC 92


>gi|166711657|ref|ZP_02242864.1| putative ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 94

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDA 54
          M+  +   C+ C    C   CP      GE    I P  C +C        C   CPV+ 
Sbjct: 1  MSLKINALCVNCDV--CEPACPNQAISMGETIYVIDPARCTECVGHFDEAQCVVVCPVEC 58

Query: 55 IKPD--TEPGLELWLKINSEYATQWPNITTKKESLP 88
          I PD       +  L    +     P +  ++   P
Sbjct: 59 IDPDPAIPETHDQLLAKLMQLQRDHPELYEQEPPAP 94


>gi|153940224|ref|YP_001389380.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152936120|gb|ABS41618.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|295317487|gb|ADF97864.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           230613]
          Length = 387

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D   +G+  +   +  +CI C  C+  CP  AI+
Sbjct: 317 IKEKCIGCN--RCAEVCPEKPYVIDMIKKGDKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPILIKEKCIGCNRCAEVCP 332


>gi|53802986|ref|YP_115287.1| electron transport complex protein RnfB [Methylococcus capsulatus
           str. Bath]
 gi|53756747|gb|AAU91038.1| electron transport complex, B subunit [Methylococcus capsulatus
           str. Bath]
          Length = 178

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           CI C  T C++ CPVD        +  +   EC  C +C   CPVD I  +
Sbjct: 112 CIGC--TLCIQACPVDAILGAAKLMHTVIASECTGCELCIAPCPVDCIAME 160



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAI 55
           E+   I   +CI C +C   CPVDAI
Sbjct: 102 ESVAVIDETKCIGCTLCIQACPVDAI 127


>gi|306921797|dbj|BAJ17556.1| dissimilatory sulfite reductase beta subunit [Prosthecochloris
           vibrioformis]
          Length = 307

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 180 CELPKAVARCPVAAIRPTVVNGKRSLMVDEAKCICCGACFGACPAMEINHPEHSKFAIWV 239


>gi|316932550|ref|YP_004107532.1| cytochrome c oxidase accessory protein CcoG [Rhodopseudomonas
           palustris DX-1]
 gi|315600264|gb|ADU42799.1| cytochrome c oxidase accessory protein CcoG [Rhodopseudomonas
           palustris DX-1]
          Length = 480

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 16/73 (21%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAI 55
           +  +CI C    CV VCP          L      C+ CG+C   C         P D I
Sbjct: 260 IAGDCIDC--HQCVNVCPTGVDIRQGLQL-----GCVQCGLCIDACNTVMKQVGRPPDLI 312

Query: 56  KPDTEPGLELWLK 68
             DT+  ++  L 
Sbjct: 313 AYDTDLNIQRRLD 325


>gi|257063008|ref|YP_003142680.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
 gi|256790661|gb|ACV21331.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
          subunit [Slackia heliotrinireducens DSM 20476]
          Length = 57

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          T+ C+ C    C + CP +     +    ++  EC+DCGVC  EC V+AI  +
Sbjct: 7  TDECVGCGV--CADSCPNEAIEVVDGVAVVNEAECVDCGVCVDECAVEAITVE 57



 Score = 33.6 bits (76), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I+ DEC+ CGVC   CP +AI+
Sbjct: 5  INTDECVGCGVCADSCPNEAIE 26


>gi|242280739|ref|YP_002992868.1| glutamate synthase alpha subunit domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123633|gb|ACS81329.1| glutamate synthase alpha subunit domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 775

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFY----EGENF-LAIHPDECIDCGVCEPECP 51
           +C  C    C  VCP         EG++F +    ++CI CG C   CP
Sbjct: 716 SCRDCGL--CETVCPQAAISRKGGEGKDFEMVCDSEKCIGCGFCANVCP 762



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 40  CIDCGVCEPECPVDAI 55
           C DCG+CE  CP  AI
Sbjct: 717 CRDCGLCETVCPQAAI 732


>gi|46579107|ref|YP_009915.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603313|ref|YP_967713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46448520|gb|AAS95174.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit,
           putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563542|gb|ABM29286.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311232951|gb|ADP85805.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit,
           putative [Desulfovibrio vulgaris RCH1]
          Length = 255

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    CV VCPV   D   EG     ++P  CI C  C   CP  A
Sbjct: 74  PCMQCGKPSCVSVCPVVATDKNEEGGIVSQVYP-RCIGCRYCMASCPYHA 122



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 32 FLAIHPDECIDCGVCEPECPVD---AIKPD 58
           + I  D+C  CG C   C  +   A +PD
Sbjct: 12 GMVIDLDKCTGCGACMVACQAENNIAPQPD 41


>gi|189501296|ref|YP_001960766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189496737|gb|ACE05285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 188

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C++  CV  CP    +  +N    I+   C  C  C   CP DA
Sbjct: 58  SERCQHCENAPCVTYCPTRASHYDDNGTVQINRSRCTGCKACLAACPYDA 107


>gi|89900294|ref|YP_522765.1| NADH dehydrogenase subunit I [Rhodoferax ferrireducens T118]
 gi|115502541|sp|Q21YB9|NUOI_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|89345031|gb|ABD69234.1| NADH-quinone oxidoreductase, chain I [Rhodoferax ferrireducens
           T118]
          Length = 177

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        I  ++CI CG CE  CPVD+I
Sbjct: 76  ERCIACKL--CEAICPAMAITIESEVRADGSRRTTRYDIDLNKCIFCGFCEESCPVDSI 132



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 76 ERCIACKLCEAICPAMAITIESE 98


>gi|327398331|ref|YP_004339200.1| NIL domain-containing protein [Hippea maritima DSM 10411]
 gi|327180960|gb|AEA33141.1| NIL domain-containing protein [Hippea maritima DSM 10411]
          Length = 138

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDTE 60
           E C  C    CV VCP       +       ++ D CI CG C   CPV A+  + E
Sbjct: 83  EKCYHCGF--CVAVCPTQALTINDRKTMRVDLYKDRCIACGYCVKVCPVKAMNLENE 137


>gi|325679919|ref|ZP_08159488.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 8]
 gi|324108357|gb|EGC02604.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 8]
          Length = 606

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 9   CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C+    CP     +G    AI    C  CG+C   CPV+AI
Sbjct: 555 CINCK--KCINSLGCPGLVIKDG--KAAIEASLCTGCGLCSQVCPVNAI 599


>gi|288961304|ref|YP_003451643.1| formate hydrogenlyase complex iron-sulfur subunit [Azospirillum
          sp. B510]
 gi|288913612|dbj|BAI75099.1| formate hydrogenlyase complex iron-sulfur subunit [Azospirillum
          sp. B510]
          Length = 186

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           E+CI C    C   CP +          G    +I+   C+ CG CE  CP  AI+   
Sbjct: 37 AEDCIAC--AACTVACPANAIAMETDTTAGNRVWSINYGRCVFCGRCEESCPTGAIRLSD 94

Query: 60 E 60
          +
Sbjct: 95 D 95


>gi|253996808|ref|YP_003048872.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
 gi|253983487|gb|ACT48345.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
          Length = 476

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCPV               ECI CG+C   C
Sbjct: 270 DCIDCNF--CVQVCPVGIDIRNGLQY-----ECISCGLCVDAC 305


>gi|237728000|ref|ZP_04558481.1| formate dehydrogenase-O beta subunit [Citrobacter sp. 30_2]
 gi|226910257|gb|EEH96175.1| formate dehydrogenase-O beta subunit [Citrobacter sp. 30_2]
          Length = 300

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155


>gi|222444431|ref|ZP_03606946.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433996|gb|EEE41161.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii
           DSM 2375]
          Length = 274

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    C E CPV+  +  E  + ++ D+CI C  C   CPV A
Sbjct: 222 DECVNCYL--CEENCPVEAIWLDEEKVVLNNDKCIRCINCTSHCPVGA 267



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 12/61 (19%)

Query: 9   CILCKHTDCVEVCPVD---------CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           CI C    CV+ C  D              +N L I+ DEC++C +CE  CPV+AI  D 
Sbjct: 187 CIGCG--ACVQFCENDSVKLDRTIGPIVHTKN-LEINQDECVNCYLCEENCPVEAIWLDE 243

Query: 60  E 60
           E
Sbjct: 244 E 244



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
          +   CI C    CV+ CPVD       F +A    +C+ C +C   CPV AIK
Sbjct: 46 IAPRCIRCN--MCVDQCPVDAIEPANIFKIAKITHDCVKCEICVQTCPVSAIK 96



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 40 CIDCGVCEPECPVDAIKP 57
          CI C +C  +CPVDAI+P
Sbjct: 50 CIRCNMCVDQCPVDAIEP 67


>gi|217979057|ref|YP_002363204.1| NADH dehydrogenase subunit I [Methylocella silvestris BL2]
 gi|259514776|sp|B8EIM5|NUOI_METSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|217504433|gb|ACK51842.1| NADH-quinone oxidoreductase, chain I [Methylocella silvestris BL2]
          Length = 162

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117


>gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 617

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP      E      I    CI C  C   C   AI
Sbjct: 566 VIEEDCTTCGL--CEPVCPSGSVTWEKGEVAHIDLTTCIRCKACVDACKFRAI 616



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP     +   ++ I  D C  CG+CEP CP  ++  +
Sbjct: 553 CPGTVCNDLIKYVVIEED-CTTCGLCEPVCPSGSVTWE 589


>gi|220916901|ref|YP_002492205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954755|gb|ACL65139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 258

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
           V   C  C+   C  VCP        + + + +   C+ C  C   CP +
Sbjct: 98  VPRLCNHCESPACTTVCPTQATCRRADGVVVVNNTRCVGCAACVQACPYE 147


>gi|121535967|ref|ZP_01667761.1| aldo/keto reductase [Thermosinus carboxydivorans Nor1]
 gi|121305459|gb|EAX46407.1| aldo/keto reductase [Thermosinus carboxydivorans Nor1]
          Length = 315

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V + C+ C    C   CP+      +    +   +C+ CG C   CP
Sbjct: 264 VEDWCVGCG--RCAGKCPMQAITIVDGMAVVDHSKCVLCGYCGAHCP 308



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 38  DECIDCGVCEPECPVDAI 55
           D C+ CG C  +CP+ AI
Sbjct: 266 DWCVGCGRCAGKCPMQAI 283


>gi|91776405|ref|YP_546161.1| NADH dehydrogenase subunit I [Methylobacillus flagellatus KT]
 gi|123078791|sp|Q1GZL7|NUOI_METFK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91710392|gb|ABE50320.1| NADH dehydrogenase subunit I [Methylobacillus flagellatus KT]
          Length = 163

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPAMAITIESEQREDNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 118



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 62 ERCIACKLCEAVCPAMAITIESEQRED 88


>gi|148264481|ref|YP_001231187.1| nitroreductase [Geobacter uraniireducens Rf4]
 gi|146397981|gb|ABQ26614.1| nitroreductase [Geobacter uraniireducens Rf4]
          Length = 303

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAI 55
          +C  C    C  +CP++   +    +AI       CI CG C   CP   I
Sbjct: 20 SCTACG--ACAAICPLEVLTQTATGIAIDNAAMFGCIACGQCMMVCPAHCI 68



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 34 AIHPDECIDCGVCEPECPVD 53
           I  + C  CG C   CP++
Sbjct: 15 VIDRNSCTACGACAAICPLE 34


>gi|310816705|ref|YP_003964669.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
 gi|308755440|gb|ADO43369.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
          Length = 164

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI- 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI 
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 120

Query: 56  -----KPDTEPGLELWLKINSEYA 74
                +  TE   EL+   +   A
Sbjct: 121 EGPNFEFATESREELFYDKDKLLA 144


>gi|282901490|ref|ZP_06309415.1| Ferredoxin-like protein in nif region protein, fdxN
          [Cylindrospermopsis raciborskii CS-505]
 gi|281193769|gb|EFA68741.1| Ferredoxin-like protein in nif region protein, fdxN
          [Cylindrospermopsis raciborskii CS-505]
          Length = 112

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV-------CEPECPV 52
          M Y +T  CI C    CV  CP     + E    I    C +C         C+  CP 
Sbjct: 1  MAYTITSQCISCNL--CVSACPNGAIEKVEGKHIIDAQRCTNCANTIYTVPQCKAVCPT 57


>gi|251780085|ref|ZP_04823005.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084400|gb|EES50290.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 285

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +V+ + C+ C    CV+ C        +  +  + D C+DCG C   C + A
Sbjct: 162 FVI-DKCVGCGL--CVKACRQKALEVVDKKIVHNKDLCVDCGGCVRACKLGA 210


>gi|166032145|ref|ZP_02234974.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
 gi|166027868|gb|EDR46625.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
          Length = 249

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            Y V++ CI C    C   CP       +       ++C  C  C   CPV+AI
Sbjct: 176 AYHVSDECIGCGL--CERKCPAKAIEIQDGKPVWIKEDCYLCMACLNYCPVEAI 227



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           DECI CG+CE +CP  AI  + + G  +W+K
Sbjct: 181 DECIGCGLCERKCPAKAI--EIQDGKPVWIK 209


>gi|88603224|ref|YP_503402.1| nitrite and sulfite reductase 4Fe-4S region [Methanospirillum
           hungatei JF-1]
 gi|88188686|gb|ABD41683.1| nitrite and sulphite reductase 4Fe-4S region [Methanospirillum
           hungatei JF-1]
          Length = 291

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            Y V   C  C    CV+ C           + ++ D C+ CG+C   CP   IK +
Sbjct: 156 PYRVPGTCTGCG--TCVQYCKEKAISIKNGQIQMNDDLCVHCGMCIQSCPFHIIKAE 210


>gi|83594655|ref|YP_428407.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83577569|gb|ABC24120.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 506

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV+VCP      EG          CI CG+C   C
Sbjct: 291 DCVDCGL--CVQVCPTGVDIREGTQL------GCIGCGLCVDAC 326



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 40  CIDCGVCEPECPVD 53
           C+DCG+C   CP  
Sbjct: 292 CVDCGLCVQVCPTG 305


>gi|76802482|ref|YP_327490.1| ferredoxin II [Natronomonas pharaonis DSM 2160]
 gi|76558347|emb|CAI49937.1| ferredoxin II [Natronomonas pharaonis DSM 2160]
          Length = 109

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLA-------IHPDECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F   +  +             D+CIDC +C   CPV
Sbjct: 37  THVAVDLDICVGDGACLEDCPVDVFEWIDTPDHPESEQKVTPADEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPGLELWL 67
           DAI  D +PG E  +
Sbjct: 97  DAI--DVDPGRENRI 109


>gi|147669455|ref|YP_001214273.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. BAV1]
 gi|289432722|ref|YP_003462595.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. GT]
 gi|146270403|gb|ABQ17395.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. BAV1]
 gi|288946442|gb|ADC74139.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. GT]
          Length = 183

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPV-D 53
           V E CI C    C   CPV         GE+       ++I    CI CG+C   CP  +
Sbjct: 50  VKETCIACL--ACARACPVKAINMEVSRGEDRKLKVDHMSIDFGLCIFCGLCVESCPTKN 107

Query: 54  AIK 56
           AI 
Sbjct: 108 AIY 110



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + CI C  C   CPV AI  +   G +  LK++
Sbjct: 51 KETCIACLACARACPVKAINMEVSRGEDRKLKVD 84


>gi|328543695|ref|YP_004303804.1| NADH-quinone oxidoreductase subunit I [polymorphum gilvum
           SL003B-26A1]
 gi|326413439|gb|ADZ70502.1| NADH-quinone oxidoreductase subunit I [Polymorphum gilvum
           SL003B-26A1]
          Length = 162

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123


>gi|307942127|ref|ZP_07657478.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4]
 gi|307774413|gb|EFO33623.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4]
          Length = 162

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123


>gi|298674716|ref|YP_003726466.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methanohalobium evestigatum Z-7303]
 gi|298287704|gb|ADI73670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanohalobium evestigatum Z-7303]
          Length = 58

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
            V +E C  C+   CV+ CPVD     ++ +  +  +EC DC  C   CPV+AI
Sbjct: 3  AVVDSEICTGCE--ACVDECPVDAISMNDDGIAVVDEEECTDCEACVDICPVEAI 55


>gi|294011317|ref|YP_003544777.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S]
 gi|292674647|dbj|BAI96165.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S]
          Length = 161

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAQPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 116



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +P  +
Sbjct: 60 ERCIACKLCEAICPAQAITIEAQPRDD 86



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 101 CIYCGF--CQEACPVDAIVEGPNF 122


>gi|265753219|ref|ZP_06088788.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236405|gb|EEZ21900.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 508

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECP 51
           + +NCI         +C   CP                     ++ + CI CG CE  CP
Sbjct: 431 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPKDENDESSPKIPVVNTERCIGCGACENLCP 490

Query: 52  V---DAIKPD 58
                AI  +
Sbjct: 491 ARPFSAIYVE 500



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDE------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP       G+    + P+       C  +C  C   CP DAI 
Sbjct: 357 AQHCTAC--QLCVSVCPNQILRPSGDLKRLMQPEMSYERGYCRPECAKCAEVCPTDAIH 413



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C  DAIK 
Sbjct: 221 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQDAIKY 268


>gi|257452895|ref|ZP_05618194.1| hypothetical protein F3_07499 [Fusobacterium sp. 3_1_5R]
 gi|257462572|ref|ZP_05626983.1| hypothetical protein FuD12_01890 [Fusobacterium sp. D12]
 gi|257466740|ref|ZP_05631051.1| hypothetical protein FgonA2_04820 [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315917889|ref|ZP_07914129.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059437|ref|ZP_07923922.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|317060225|ref|ZP_07924710.1| predicted protein [Fusobacterium sp. D12]
 gi|313685113|gb|EFS21948.1| predicted protein [Fusobacterium sp. 3_1_5R]
 gi|313685901|gb|EFS22736.1| predicted protein [Fusobacterium sp. D12]
 gi|313691764|gb|EFS28599.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 56

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C  VCPV      ++      D C+DCG C   CPV AI
Sbjct: 7  ETCIGCG--ACEGVCPVSTISATDDGKYEVGDACVDCGACAAGCPVSAI 53



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I  + CI CG CE  CPV  I    +   E
Sbjct: 1  MHVIDKETCIGCGACEGVCPVSTISATDDGKYE 33


>gi|237725760|ref|ZP_04556241.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435568|gb|EEO45645.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 508

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECP 51
           + +NCI         +C   CP                     ++ + CI CG CE  CP
Sbjct: 431 IAQNCIVNTDKVSCGNCARHCPTGAIQMIPKDENDESSPKIPVVNTERCIGCGACENLCP 490

Query: 52  V---DAIKPD 58
                AI  +
Sbjct: 491 ARPFSAIYVE 500



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDE------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP       G+    + P+       C  +C  C   CP DAI 
Sbjct: 357 AQHCTAC--QLCVSVCPNQVLRPSGDLKRLMQPEMSYERGYCRPECAKCAEVCPTDAIH 413



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C  DAIK 
Sbjct: 221 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQDAIKY 268


>gi|226326958|ref|ZP_03802476.1| hypothetical protein PROPEN_00818 [Proteus penneri ATCC 35198]
 gi|225204795|gb|EEG87149.1| hypothetical protein PROPEN_00818 [Proteus penneri ATCC 35198]
          Length = 312

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     + CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINEEDN 155



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 17/69 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP +     E +N       +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFNVPRINEEDNRAY----KCTLCVDRVEVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGL 63
           I   ++  +
Sbjct: 184 IHFGSKEAM 192


>gi|171058193|ref|YP_001790542.1| NADH dehydrogenase subunit I [Leptothrix cholodnii SP-6]
 gi|170775638|gb|ACB33777.1| NADH-quinone oxidoreductase, chain I [Leptothrix cholodnii SP-6]
          Length = 165

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 64  ERCIACKL--CEAVCPAMAITIESDVRADGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 120



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 64 ERCIACKLCEAVCPAMAITIESD 86


>gi|134302046|ref|YP_001122015.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|254369257|ref|ZP_04985269.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|134049823|gb|ABO46894.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|157122207|gb|EDO66347.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 209

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|159043218|ref|YP_001532012.1| nitrogen fixation protein fixG [Dinoroseobacter shibae DFL 12]
 gi|157910978|gb|ABV92411.1| nitrogen fixation protein fixG [Dinoroseobacter shibae DFL 12]
          Length = 480

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP+      G+        ECI CG+C   C
Sbjct: 259 DCIDC--MACVNVCPMGIDIRNGQQM------ECITCGLCIDAC 294



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 23/60 (38%)

Query: 17  CVEVCP---VDCFYEGENFLAI--------------------HPDECIDCGVCEPECPVD 53
           C+  CP   +      E+ L I                       +CIDC  C   CP+ 
Sbjct: 214 CIYACPWPRIQAAMMDEDTLTIGYRDWRGEPRGKHRKAEGAEEKGDCIDCMACVNVCPMG 273


>gi|118590029|ref|ZP_01547433.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614]
 gi|118437526|gb|EAV44163.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614]
          Length = 162

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 41 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 83



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123


>gi|147921465|ref|YP_684720.1| putative heterodisulfide reductase, subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620116|emb|CAJ35394.1| putative heterodisulfide reductase, subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 786

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  E C  C    C+++CP    Y     +AI P  CI  G C   CP  AI   +  
Sbjct: 578 AVVDPERCTRCG--ICLKLCPYGAPYL-NGKVAIDPLSCIGLGGCISRCPEHAITMPSCS 634

Query: 62  GLELWLKIN 70
             EL+ +I+
Sbjct: 635 DEELFARID 643



 Score = 41.7 bits (97), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 20/71 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           ++  + C+ C    C   C V    E                       +I PD C  CG
Sbjct: 240 FIDPDKCVSCG--KCSAACSVRVPDEWNAGLSSRKAVYKPFAQAVPGTYSIDPDACKRCG 297

Query: 45  VCEPECPVDAI 55
            C  EC   AI
Sbjct: 298 KCARECDARAI 308



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIK 56
             F  + P+ C  CG+C   CP  A  
Sbjct: 575 PKFAVVDPERCTRCGICLKLCPYGAPY 601



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 33  LAIHPDECIDCGVCEPECPV 52
           + I PD+C+ CG C   C V
Sbjct: 239 VFIDPDKCVSCGKCSAACSV 258


>gi|160872870|ref|ZP_02063002.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli]
 gi|159121669|gb|EDP47007.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli]
          Length = 165

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGE---------NFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP      E E             I   +CI CG CE  CPVDAI
Sbjct: 64  ERCIACKL--CEAVCPALAITIEAEPREDGSRRTTLYEIDLFKCIYCGFCEESCPVDAI 120



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 64 ERCIACKLCEAVCPALAITIEAEPRED 90


>gi|88602555|ref|YP_502733.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188017|gb|ABD41014.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 201

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    C++VCP       E    + +   +CI CGVC   CP   I+          
Sbjct: 60  CRHCDPAPCMQVCPTGSLSRDESTGSVLVDYLKCIRCGVCAMACPFGIIEFRKVIKPAPD 119

Query: 67  LKINSE 72
            ++N++
Sbjct: 120 REVNAK 125


>gi|83589573|ref|YP_429582.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83572487|gb|ABC19039.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 159

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVD 53
          C  C    C+ VCP          N + I  D CI C +C   CP  
Sbjct: 53 CQHCDEPACMAVCPAGAISRDVKTNAVIIDEDRCIGCRMCIMACPFG 99


>gi|78357974|ref|YP_389423.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220379|gb|ABB39728.1| molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit,
           putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 255

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C  C +  CV VCPV   D   EG     + P  CI C  C   CP  A
Sbjct: 74  PCQQCGNPPCVSVCPVIATDKNEEGGIVSQVTP-RCIGCRYCMAACPYHA 122


>gi|20092985|ref|NP_619060.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19918302|gb|AAM07540.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 58

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C    C++ CP        ++   +  DEC+DCG CE  CP  AI  +
Sbjct: 7  ADACTGCG--SCIDECPAAAISLSDDDIAVVDEDECLDCGACEDACPNGAITLE 58


>gi|323978192|gb|EGB73278.1| 4Fe-4S binding domain-containing protein [Escherichia coli
          TW10509]
          Length = 184

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +     +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDMQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.]
          Length = 1155

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 9    CILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C LC+   C++ CP       Y+ E  L I+P  C  CG C   CP  A
Sbjct: 1090 CALCEQ--CIDACPYGARSVDYDNERIL-INPGICQGCGTCAAVCPNSA 1135



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 20/65 (30%)

Query: 9   CILCKHTDCVEVCPVD------------------CFYEGENFLAIHPDECIDCGVCEPEC 50
           C  C +  C +VC V+                    +   N   I    C  CG C   C
Sbjct: 118 CTGCGY--CADVCQVEIPDKFNENIGTHKAVYLPVPHAIPNPYIIDFTSCTRCGACIKVC 175

Query: 51  PVDAI 55
           P  AI
Sbjct: 176 PTGAI 180


>gi|253681487|ref|ZP_04862284.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium
           botulinum D str. 1873]
 gi|253561199|gb|EES90651.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium
           botulinum D str. 1873]
          Length = 282

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C    C +VC  D     +    I    C  CG C   CP +AIK   E    +++
Sbjct: 67  CISCG--KCEKVCRFDAISNNK----IDSYSCEGCGTCIIVCPNNAIKLKEEKSANMYI 119



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G     I+ + CI CG CE  C  DAI
Sbjct: 56 GGKIAEINYNLCISCGKCEKVCRFDAI 82


>gi|269866490|ref|XP_002652291.1| Fe-S-cluster-containing hydrogenase components 1 [Enterocytozoon
          bieneusi H348]
 gi|220062798|gb|EED41764.1| Fe-S-cluster-containing hydrogenase components 1 [Enterocytozoon
          bieneusi H348]
          Length = 149

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVD 53
          TY +   C  C+ + C  VCP    Y  E    + ++ ++CI C  C   CP  
Sbjct: 28 TYWLPVMCQQCEESPCTHVCPTGASYRDEKTGMVLVNKEKCIGCKYCMMACPYG 81


>gi|171060331|ref|YP_001792680.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix
          cholodnii SP-6]
 gi|170777776|gb|ACB35915.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix
          cholodnii SP-6]
          Length = 431

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C  +CPV           +   +C  C  C   CP  +I
Sbjct: 18 EICIRCN--TCEAICPVQAITHDSRNYVVDAVKCNLCMACISPCPTGSI 64



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I P+ CI C  CE  CPV AI  D+ 
Sbjct: 15 IDPEICIRCNTCEAICPVQAITHDSR 40


>gi|222053326|ref|YP_002535688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
            FRC-32]
 gi|221562615|gb|ACM18587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
            FRC-32]
          Length = 1019

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 5    VTE-NCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            VTE +C+ C    C+  C                 + P  C   G+C  +CP  AI    
Sbjct: 940  VTESDCVSCG--ACITACKYGAISFHDTPQGKKARVEPILCKGDGLCNAKCPTGAIYLKH 997

Query: 60   EPGLELWLKINSEY 73
                E++ +I++  
Sbjct: 998  YTDDEIFAQIDAAL 1011



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 25/83 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYE--GENF-------------LAIHPDECI--- 41
           Y+  E C  C    CV+ CPV   D F +   EN                + P+ C+   
Sbjct: 105 YISEEKCTGCN--ICVDYCPVKISDPFNQHLSENKAVHIYFSQAVPLVTYVDPETCLYLK 162

Query: 42  --DCGVCEPECPVDAIKPDTEPG 62
              C +C   C  +AI    +P 
Sbjct: 163 EGKCQICVGACKTNAIDLHQKPE 185


>gi|91772644|ref|YP_565336.1| cobyrinic acid a,c-diamide synthase [Methanococcoides burtonii DSM
           6242]
 gi|91711659|gb|ABE51586.1| MinD /ParA family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 290

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            Y+    CI C    C E C  D      + + +   EC  CGVC   CP  AI      
Sbjct: 61  AYIDDSLCIQCGL--CKEACRFDAIT---DNIKVDSFECEGCGVCAHICPEGAITLVERK 115

Query: 62  GLELWL 67
             E +L
Sbjct: 116 AGEAYL 121


>gi|85857983|ref|YP_460185.1| heterodisulfide reductase subunit A and related polyferredoxins
            [Syntrophus aciditrophicus SB]
 gi|85721074|gb|ABC76017.1| heterodisulfide reductase, subunit A and related polyferredoxins
            [Syntrophus aciditrophicus SB]
          Length = 1039

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 9    CILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    CV  C           +G+    I P  C  CG+C  +CP  AI+       
Sbjct: 957  CMACG--ACVPACTYGAIEFKETKQGKKASVI-PVLCKGCGLCNSKCPTGAIQLKHYTDT 1013

Query: 64   ELWLKINSEYATQ 76
            EL  +I++  +++
Sbjct: 1014 ELLTQIDAAGSSE 1026



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKP 57
            ++   C+ CG C P C   AI+ 
Sbjct: 951 EVNEKMCMACGACVPACTYGAIEF 974


>gi|73667682|ref|YP_303697.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
 gi|72394844|gb|AAZ69117.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
          Length = 58

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          V  ++C  C    CV+ CP         +   +  +EC+DCG CE  CP +AI  +
Sbjct: 5  VNADSCTGCG--TCVDECPAAAISLNDNDIAVVDENECLDCGACEDACPNNAITIE 58


>gi|89256273|ref|YP_513635.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314727|ref|YP_763450.1| NADH:ubiquinone oxidoreductase subunit RnfB [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502339|ref|YP_001428404.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|254367609|ref|ZP_04983630.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           holarctica 257]
 gi|89144104|emb|CAJ79361.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129626|gb|ABI82813.1| NADH:ubiquinone oxidoreductase subunit RnfB [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253420|gb|EBA52514.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           holarctica 257]
 gi|156252942|gb|ABU61448.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 209

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|56707771|ref|YP_169667.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670242|ref|YP_666799.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456842|ref|ZP_03665315.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370271|ref|ZP_04986276.1| NADH:ubiquinone oxidoreductase subunit RnfB [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874583|ref|ZP_05247293.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604263|emb|CAG45282.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320575|emb|CAL08665.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568514|gb|EDN34168.1| NADH:ubiquinone oxidoreductase subunit RnfB [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840582|gb|EET19018.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158943|gb|ADA78334.1| Iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 209

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|194333119|ref|YP_002014979.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194310937|gb|ACF45332.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 223

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 15/65 (23%)

Query: 3   YVVTEN-CILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVC--EPE 49
           Y + EN C+ C    C++ CP  V+           EG     I  D CI C  C    E
Sbjct: 125 YFILENLCVGCGL--CLDTCPPKVNAIGYKFYGDVQEGGFRCYIDQDACISCAACFSSDE 182

Query: 50  CPVDA 54
           CP  A
Sbjct: 183 CPSGA 187


>gi|322709044|gb|EFZ00621.1| translation initiation factor RLI1 [Metarhizium anisopliae ARSEF
           23]
          Length = 852

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4   VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           V ++ C    C+  +C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 195 VNSDKCRPRKCR-QECKKSCPVVRSGKLCIEVTPESRLAFISESLCIGCGICPKKCPFDA 253

Query: 55  I 55
           I
Sbjct: 254 I 254


>gi|306921800|dbj|BAJ17558.1| dissimilatory sulfite reductase beta subunit [Chlorobium
           phaeovibrioides]
          Length = 335

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVNGKRSLMVDEAKCICCGACFGACPAMEINHPEHSKFAIWV 264


>gi|254502708|ref|ZP_05114859.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222438779|gb|EEE45458.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 161

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 59  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 116



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          PV   + GE+ L  +P   + CI C +CE  CP  AI  +  P
Sbjct: 40 PVSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAGP 82



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 101 CIYCGF--CQEACPVDAIVEGPNF 122


>gi|39995889|ref|NP_951840.1| hydrogenase 2 protein HybA [Geobacter sulfurreducens PCA]
 gi|39982653|gb|AAR34113.1| nickel-dependent hydrogenase, iron-sulfur cluster-binding protein
           [Geobacter sulfurreducens PCA]
 gi|307634747|gb|ADI83626.2| periplasmically oriented, membrane-bound [NiFe]-hydrogenase
           iron-sulfur cluster-binding subunit [Geobacter
           sulfurreducens KN400]
          Length = 305

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  +C+ C    CV  CPV    +      +A + + CI C  C+  CP +  +   +  
Sbjct: 110 VKHSCMHCTKPGCVSACPVKAMTKDPVTGVVAYNKNACIGCRYCQVACPYNIPRFQWDKA 169

Query: 63  LEL 65
           L  
Sbjct: 170 LPQ 172


>gi|20089323|ref|NP_615398.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19914212|gb|AAM03878.1| ferredoxin [Methanosarcina acetivorans C2A]
          Length = 60

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
          V  + C  C    CV+ CP +     E      +  DEC++CG CE  CP  AIK + 
Sbjct: 5  VNADECSGCG--TCVDECPSEAITLDEEKGLAVVDQDECVECGACEEACPNQAIKVEE 60



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          ++ DEC  CG C  ECP +AI  D E GL
Sbjct: 5  VNADECSGCGTCVDECPSEAITLDEEKGL 33


>gi|120599991|ref|YP_964565.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560084|gb|ABM26011.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 487

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +  L  ++
Sbjct: 286 DCVDC--HLCVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKQNLIGYM 338

Query: 68  KIN 70
             N
Sbjct: 339 SEN 341


>gi|146292075|ref|YP_001182499.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563765|gb|ABP74700.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 487

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C    CVEVCP                ECI+CG C   C    +K D +  L  ++
Sbjct: 286 DCVDC--HLCVEVCPTGIDIRNGLQY-----ECINCGACVDACNETMLKFDYKQNLIGYM 338

Query: 68  KIN 70
             N
Sbjct: 339 SEN 341


>gi|325143283|gb|EGC65621.1| ferredoxin [Neisseria meningitidis 961-5945]
          Length = 63

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D   +GE    I+P+ C  C        C+  CPVD 
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDC 58

Query: 55 IKPDT 59
          I  D 
Sbjct: 59 ILIDE 63


>gi|291279718|ref|YP_003496553.1| hypothetical protein DEFDS_1334 [Deferribacter desulfuricans SSM1]
 gi|290754420|dbj|BAI80797.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 571

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDAIK 56
           + C LC    CV  C +      E   +++  P  CI CG+CE  CP +AI+
Sbjct: 445 DECTLCL--ACVNHCKIGALVAKEEDFSLNHTPAFCIQCGICEYVCPENAIE 494



 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CK   C+E C  +     +  + ++   C+ CG C   CP  A
Sbjct: 231 GCK--RCIESCEYEAISTDDEGIVVNHLNCVGCGKCISVCPTGA 272



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C  C   +C +VCP +     +  L I    C  C  CE  C  +AI  D    +E
Sbjct: 117 EKCSWCG--ECFKVCPENAI---DLDLNIDYGLCSLCKKCEQVCKDNAITIDRLESIE 169


>gi|224371828|ref|YP_002605992.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2]
 gi|223694545|gb|ACN17828.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2]
          Length = 544

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 28/82 (34%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG---ENFLA--IH---------------------PDEC 40
           + C LC    C  VCPV         +  L   IH                      + C
Sbjct: 26  DRCTLCGQ--CTAVCPVQAIELAVFRKRNLVTSIHRVEDNRSTFDTFYGIKQKTTIAEAC 83

Query: 41  IDCGVCEPECPVDAIKPDTEPG 62
           I C +C   CP DAI+P+  PG
Sbjct: 84  IGCAMCSMVCPNDAIEPNPHPG 105


>gi|187931878|ref|YP_001891863.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712787|gb|ACD31084.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 209

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCI 128



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|119719107|ref|YP_919602.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524227|gb|ABL77599.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 180

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTE 60
           V  NC  C+   C+ VCPV           I     CI C +C   CP      D E
Sbjct: 59  VPLNCRHCEEAPCMAVCPVKAIKRDAEGAVIVDSLRCIGCRLCVLACPFGIPTVDKE 115


>gi|121594420|ref|YP_986316.1| RnfABCDGE type electron transport complex subunit B [Acidovorax sp.
           JS42]
 gi|120606500|gb|ABM42240.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           sp. JS42]
          Length = 217

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ EN CI C  T C++ CP D            I P  C  C +C P CPVD I+ +  
Sbjct: 84  VIDENWCIGC--TLCLKACPTDAILGINKRMHTVIAP-HCTGCELCLPACPVDCIRMENA 140

Query: 61  PGL 63
            G 
Sbjct: 141 SGQ 143


>gi|22328793|ref|NP_193656.2| ATRLI2; transporter [Arabidopsis thaliana]
 gi|75330288|sp|Q8LPJ4|AB2E_ARATH RecName: Full=ABC transporter E family member 2; Short=ABC
          transporter ABCE.2; Short=AtABCE2; AltName: Full=RNase
          L inhibitor-like protein 2; Short=AtRLI2;
          Short=AthaRLI2
 gi|20466462|gb|AAM20548.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|23198180|gb|AAN15617.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|110742163|dbj|BAE99009.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|332658760|gb|AEE84160.1| ABC transporter E family member 2 [Arabidopsis thaliana]
          Length = 605

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV      C     G     I  + CI CG+C  +CP +A
Sbjct: 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEA 69

Query: 55 IK 56
          I+
Sbjct: 70 IQ 71


>gi|84686443|ref|ZP_01014337.1| NADH dehydrogenase subunit I [Maritimibacter alkaliphilus HTCC2654]
 gi|84665626|gb|EAQ12102.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2654]
          Length = 164

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|86149164|ref|ZP_01067396.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597238|ref|ZP_01100473.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561992|ref|YP_002343771.1| ferredoxin [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85840522|gb|EAQ57779.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190299|gb|EAQ94273.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359698|emb|CAL34484.1| ferredoxin [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925605|gb|ADC27957.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927863|gb|EFV07188.1| ferredoxin [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928681|gb|EFV07964.1| ferredoxin [Campylobacter jejuni subsp. jejuni 305]
          Length = 94

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV+         EGE+   ++ ++C++C        C  
Sbjct: 1  MAVKITDICIACG--SCIDECPVNAIVDDTNNPEGEDRYYVYANKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLELWLKIN 70
                D CI CG C  ECPV+AI  DT   E     ++  N
Sbjct: 1  MAVKITDICIACGSCIDECPVNAIVDDTNNPEGEDRYYVYAN 42


>gi|258405237|ref|YP_003197979.1| NIL domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257797464|gb|ACV68401.1| NIL domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 147

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++C+ C    C  +CP            +    ++C  CG C   CPV A++ D +  L
Sbjct: 90  DSCVHCGL--CTALCPTQALSLDHETRHVLFDVEKCTACGACTRVCPVHAMRVDVDDTL 146



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
             D C+ CG+C   CP  A+  D E    L+
Sbjct: 88  DEDSCVHCGLCTALCPTQALSLDHETRHVLF 118


>gi|222056361|ref|YP_002538723.1| glutamate synthase (NADPH) [Geobacter sp. FRC-32]
 gi|221565650|gb|ACM21622.1| Glutamate synthase (NADPH) [Geobacter sp. FRC-32]
          Length = 509

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 9  CILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          CI CK   CV  C   V  + E +N L      CI C  C   CP  AI
Sbjct: 22 CIRCKV--CVRQCSYGVHSYVEQDNVLIEDNTSCIGCRRCSALCPTGAI 68


>gi|254465688|ref|ZP_05079099.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium
           Y4I]
 gi|206686596|gb|EDZ47078.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium
           Y4I]
          Length = 164

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRED 89



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|315230769|ref|YP_004071205.1| MinD-like P-loop ATPase [Thermococcus barophilus MP]
 gi|315183797|gb|ADT83982.1| MinD-like P-loop ATPase [Thermococcus barophilus MP]
          Length = 295

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           + CI C    C E CP +     +    ++   C  CGVC+  CPV
Sbjct: 69  DTCIRCG--ICYERCPYESIKLVDGKYVVNELTCEGCGVCKLVCPV 112



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G     I  D CI CG+C   CP ++IK
Sbjct: 60 GAKVARIDQDTCIRCGICYERCPYESIK 87


>gi|193213535|ref|YP_001999488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobaculum parvum NCIB 8327]
 gi|193087012|gb|ACF12288.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobaculum
           parvum NCIB 8327]
          Length = 228

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  ++           EG     I  D CI C  C    EC
Sbjct: 131 FIIENLCVGCGL--CLDKCPPKINAIGYKFYGDVQEGGFRCYIDQDACISCSACFSGDEC 188

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 189 PSGALIEQLPDGE 201


>gi|170091616|ref|XP_001877030.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648523|gb|EDR12766.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 143

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
          E CI CK   C  +CP            +G        I   +CI CG C+  CPVDAI
Sbjct: 42 ERCIACKL--CEAICPAQAITIESEARLDGSRKTTKYDIDMTKCIYCGFCQEACPVDAI 98



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E  L+
Sbjct: 42 ERCIACKLCEAICPAQAITIESEARLD 68


>gi|163753540|ref|ZP_02160664.1| probable ferredoxin [Kordia algicida OT-1]
 gi|161327272|gb|EDP98597.1| probable ferredoxin [Kordia algicida OT-1]
          Length = 474

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 21/82 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV VCP          L     EC++C  C  EC         P   I+ D
Sbjct: 269 DCIDC--FQCVNVCPTGIDIRNGTQL-----ECVNCTACIDECDTIMEKVNLPKGLIRYD 321

Query: 59  TEPGLELWLKINSEYATQWPNI 80
           +E G+E       E     P +
Sbjct: 322 SEAGIEK-----KEKFKFTPRL 338


>gi|281357174|ref|ZP_06243663.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
 gi|281316205|gb|EFB00230.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
          vadensis ATCC BAA-548]
          Length = 393

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)

Query: 6  TENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPV 52
           + C  C    C+  CP                  +    CI CG+C   CPV
Sbjct: 13 ADKCTGCG--ACIAKCPRQAVRLKFDPERLSRRTVVDDKLCIQCGMCRQACPV 63



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPG 62
          D+C  CG C  +CP  A++   +P 
Sbjct: 14 DKCTGCGACIAKCPRQAVRLKFDPE 38


>gi|158520594|ref|YP_001528464.1| cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
 gi|158509420|gb|ABW66387.1| Cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
          Length = 291

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    C+E+C  +      +   + P  C  CGVC   CP  AI    +   + +
Sbjct: 66  DRCTSCG--RCLELCRFEAIR---DDFVVDPIACEGCGVCVDLCPEQAIDFPIQTCGQWY 120

Query: 67  L 67
           +
Sbjct: 121 I 121



 Score = 40.1 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          G     I PD C  CG C   C  +AI+ D
Sbjct: 57 GGGIAEIDPDRCTSCGRCLELCRFEAIRDD 86


>gi|146313718|ref|YP_001178792.1| formate dehydrogenase beta subunit [Enterobacter sp. 638]
 gi|145320594|gb|ABP62741.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Enterobacter sp. 638]
          Length = 307

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRMNPEDN 155



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRMNPEDNRVY----KCTLCVDRVNVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEDMK 193


>gi|88602297|ref|YP_502475.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88187759|gb|ABD40756.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 119

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C  C+   CV +CP +           ++ D+C  C  C   C + AI  D E  
Sbjct: 35 CRACQDPPCVHLCPEEALLPRPGGGVTLNKDKCTGCKKCLEGCILGAISWDHEEN 89


>gi|21228649|ref|NP_634571.1| putative ferredoxin [Methanosarcina mazei Go1]
 gi|20907149|gb|AAM32243.1| putative ferredoxin [Methanosarcina mazei Go1]
          Length = 266

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V+++C  C    C EVCPV      EN       +CI C  C   CP +A
Sbjct: 191 VSDDCSQCG--TCAEVCPVGAIDP-ENSNLTDTGKCITCCACIKNCPQNA 237



 Score = 38.6 bits (89), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D+C  CG C   CPV AI P+
Sbjct: 193 DDCSQCGTCAEVCPVGAIDPE 213


>gi|41017065|sp|O27434|HDRA_METTH RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
          Length = 659

 Score = 48.2 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENFL---------------AIHPDECIDCG 44
           Y+  + C  C    CVEVCP++    F EG                    I  D CI+C 
Sbjct: 249 YIDEDLCTGCG--SCVEVCPIEMPNYFDEGIGMTKAVYIPFPQAVPLCATIDKDYCIECM 306

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C+  C   A+K D EP  
Sbjct: 307 LCDEICERGAVKHDQEPEE 325



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           ++ C  C+   C+E+CP       E    ++   C  CG C   CP  A+        ++
Sbjct: 589 SDVCGGCEV--CIELCPFGAISIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFRTEQI 646

Query: 66  WLKINSEYATQ 76
             +I +    Q
Sbjct: 647 MAQIEAALNEQ 657


>gi|323141406|ref|ZP_08076297.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414155|gb|EFY04983.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 260

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C ++CP D     +  +A    +CI C  C   CP  A
Sbjct: 188 CTSCG--ACAKICPTDAISNMDGKMATDAAKCILCMACIHACPKQA 231



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 39  ECIDCGVCEPECPVDAI 55
            C  CG C   CP DAI
Sbjct: 187 TCTSCGACAKICPTDAI 203


>gi|321224391|gb|EFX49454.1| Respiratory nitrate reductase beta chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 747

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSG 238


>gi|310778118|ref|YP_003966451.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309747441|gb|ADO82103.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 55

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 3  YVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          YV+  E CI C    C   CPV      +    I  D C+DCG C   CPVDAI
Sbjct: 2  YVIDKEACIACG--ACEGTCPVSAISAADGKYEI-SDACVDCGACAGACPVDAI 52



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
             I  + CI CG CE  CPV AI
Sbjct: 1  MYVIDKEACIACGACEGTCPVSAI 24


>gi|310658792|ref|YP_003936513.1| aldo/keto reductase [Clostridium sticklandii DSM 519]
 gi|308825570|emb|CBH21608.1| Aldo/keto reductase [Clostridium sticklandii]
          Length = 316

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           ++++ CI C   +C +VC  +          +  + C+ C  C P C    IK
Sbjct: 264 IISDWCIGC--RECEKVCKQNAISVINGKAVVDKERCVLCSYCAPRCKEFCIK 314


>gi|296242763|ref|YP_003650250.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095347|gb|ADG91298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 160

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGE-------NFLAIHPDECIDCGVCEPECPVDAIKP 57
           C  C  + C +VCP  C      EG+        F  I   +C  CG+C   CPV A+  
Sbjct: 45  CTGC--SMCQQVCPAACIDMVVVEGDYSQNPRKRFPRIDHSKCTFCGLCVEYCPVAALSM 102

Query: 58  DTEPGLELWL 67
            T  G EL+ 
Sbjct: 103 TTVTGYELFT 112


>gi|295107015|emb|CBL04558.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 223

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +T++CI C    C+E C       GE +  I  + C +CG C   CP  A++
Sbjct: 171 ITDSCIACG--TCLEGCSFKAIVPGEPYT-ILGERCDECGNCYHVCPAGAVE 219


>gi|295098705|emb|CBK87795.1| Fe-S-cluster-containing hydrogenase components 2 [Enterobacter
          cloacae subsp. cloacae NCTC 9394]
          Length = 151

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          T+     C  C+   C  VCP    +       +    CI C  C   CP  A
Sbjct: 46 TFTTAVGCHQCEDAPCANVCPTGAIHRAAGAWLVEQARCIGCKSCMVACPFGA 98


>gi|238921486|ref|YP_002935001.1| hypothetical protein NT01EI_3638 [Edwardsiella ictaluri 93-146]
 gi|238871055|gb|ACR70766.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 211

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           C  C    C+EVCP    Y   + L  I    C  CG C   CP  
Sbjct: 88  CQHCDPAPCLEVCPSQATYRDAHGLIQIDTRRCTGCGYCIRACPYQ 133


>gi|289805686|ref|ZP_06536315.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 242

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 146 QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 201



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI CG C   CPVDAI
Sbjct: 2  IDTTRCIACGDCLFVCPVDAI 22



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 142 EISPQECRMCGACWRSCPENVIQFDDD 168


>gi|116754566|ref|YP_843684.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanosaeta thermophila PT]
 gi|116666017|gb|ABK15044.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanosaeta thermophila PT]
          Length = 58

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M  VV  E C+ C    CVE CP +    + E    + P++C +CG C   CP +AI  +
Sbjct: 1  MPAVVNREECVSCG--TCVEECPEEAIKLDDEEIAVVDPEKCTECGTCVEACPSEAIHIE 58



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ +EC+ CG C  ECP +AIK D E 
Sbjct: 4  VVNREECVSCGTCVEECPEEAIKLDDEE 31


>gi|121593314|ref|YP_985210.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120605394|gb|ABM41134.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
          sp. JS42]
          Length = 85

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +  + G+    I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNEAIFLGQEHYEIEPSKCTECVGHFDEPQCVAICPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP +AI 
Sbjct: 7  DECINCDVCEPECPNEAIF 25


>gi|21226862|ref|NP_632784.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20905165|gb|AAM30456.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 58

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + C  C    CV+ CP        ++   +  DEC+DCG C   CP  AI  +
Sbjct: 7  ADACTGCG--TCVDECPAAAISLNDDDIAVVDEDECLDCGACVDACPNGAITLE 58



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEP 61
          I  D C  CG C  ECP  AI  + + 
Sbjct: 5  IDADACTGCGTCVDECPAAAISLNDDD 31


>gi|332971771|gb|EGK10719.1| NADH-quinone oxidoreductase subunit I [Desmospora sp. 8437]
          Length = 150

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGE-----------NFLAIHPDECIDCGVCEPECP 51
           Y+  + CI+C    C  VCP DC                +   I+ + CI C +C   CP
Sbjct: 46  YLDPDKCIVCNQ--CARVCPTDCITLTGRKHPEKRGKVIDTFDINFEICILCDLCTEVCP 103

Query: 52  VDAI 55
            +AI
Sbjct: 104 TEAI 107


>gi|300916621|ref|ZP_07133341.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 115-1]
 gi|300416066|gb|EFJ99376.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 115-1]
          Length = 1174

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 34/113 (30%), Gaps = 37/113 (32%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------------------------YEGENF-LAIHPDE 39
           E C  C H  CV  CP                                G+ + L + P++
Sbjct: 687 ELCTQCNH--CVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPED 744

Query: 40  CIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           C  C +C   CP          AI   +        KIN ++    P I  +K
Sbjct: 745 CTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRRK 797


>gi|298675839|ref|YP_003727589.1| RnfABCDGE type electron transport complex subunit B
           [Methanohalobium evestigatum Z-7303]
 gi|298288827|gb|ADI74793.1| electron transport complex, RnfABCDGE type, B subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 290

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V T  CI CK   C + CP D          I  ++C  CG+C  +CP   I+
Sbjct: 213 VCTTGCIGCK--ICEKNCPEDAIKVNNFLAEIDQEKCTACGICVEKCPQGTIE 263



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           CV  CP      GE+ L  I+ + C  CG+C   CP D
Sbjct: 149 CVRACPFGAITIGEDRLPHINKNLCTSCGLCIESCPND 186



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 18/72 (25%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH--------PDE--------CIDCG 44
           + ++    C  C    C+E CP D    G+    +H        P          CI C 
Sbjct: 165 LPHINKNLCTSCGL--CIESCPNDILVFGKESEKVHVRCRSHDKPKAVKAVCTTGCIGCK 222

Query: 45  VCEPECPVDAIK 56
           +CE  CP DAIK
Sbjct: 223 ICEKNCPEDAIK 234


>gi|295689285|ref|YP_003592978.1| cytochrome c oxidase accessory protein CcoG [Caulobacter segnis
           ATCC 21756]
 gi|295431188|gb|ADG10360.1| cytochrome c oxidase accessory protein CcoG [Caulobacter segnis
           ATCC 21756]
          Length = 497

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 16/64 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +C+ C    CV VCP+         L     ECI+CG+C   C         P   I  D
Sbjct: 283 DCVDC--RQCVVVCPMGIDIRDGAQL-----ECINCGLCVDACDDIMTKMGRPTGLIAYD 335

Query: 59  TEPG 62
           +E  
Sbjct: 336 SEAA 339


>gi|188587026|ref|YP_001918571.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351713|gb|ACB85983.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 652

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 40/125 (32%), Gaps = 26/125 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCF----YEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           +  C  C    C +VC          EGE+     I P  C  CG C   C  DAIK + 
Sbjct: 419 SNECSGCG--KCYQVCRFAAITFQEREGEDKQKYQIDPLNCEGCGACRLVCQSDAIKLEP 476

Query: 60  EPGLELW-------------LKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSP 106
               E +             L I  E + +   +T  K     A ++       E     
Sbjct: 477 AINGEWYKSKISQGAMSHARLGIAEENSGKLVTLTRTK-----AKELASFDNVTEGLLDG 531

Query: 107 NPGGK 111
           +PG  
Sbjct: 532 SPGTG 536



 Score = 41.7 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           E C  C   +C ++C  +        + + P+ C  CG C   CP  AI+ 
Sbjct: 77  EKCTGCG--ECSQICVFNALVSINQEILLFPELCHACGACNLACPNSAIQE 125



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPGLELWLKIN 70
           G     I  +EC  CG C   C   AI   + E   +   +I+
Sbjct: 411 GGYLARIDSNECSGCGKCYQVCRFAAITFQEREGEDKQKYQID 453


>gi|18313615|ref|NP_560282.1| polyferredoxin [Pyrobaculum aerophilum str. IM2]
 gi|18161161|gb|AAL64464.1| polyferredoxin [Pyrobaculum aerophilum str. IM2]
          Length = 370

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + E C LC    CV  CP D        L + P  CI CGVC  +CP   +  + +    
Sbjct: 255 IREGCTLCG--ACVNACPTDALSVRGYELRLVPALCIACGVCVAKCPEGVMDVERKAVER 312

Query: 65  LWLKINSEYATQWPNITTKKE 85
            +    +      P       
Sbjct: 313 PYES--AALFRDSPAKCASCG 331



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKP 57
           + + I   +CI CG+C   CP  AI+ 
Sbjct: 78  DTVVIDQSKCIWCGLCADYCPASAIEY 104


>gi|89897569|ref|YP_521056.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219670695|ref|YP_002461130.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|89337017|dbj|BAE86612.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|219540955|gb|ACL22694.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 192

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKP 57
           Y ++  C  C    CV+ CP    +   +    H  E CI C  C   CP      
Sbjct: 52  YYLSMGCNHCADAKCVKGCPTGAMHVAADGTVQHDQELCIGCKYCVWNCPYSVPHY 107


>gi|303240613|ref|ZP_07327128.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591850|gb|EFL61583.1| Radical SAM domain protein [Acetivibrio cellulolyticus CD2]
          Length = 297

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG--LE 64
           E C  C    C  VC   CF         +   C+ CG C   C   A+  +   G   E
Sbjct: 50  EYCTGCG--KCRAVCKAGCFIVNGENHYFNETNCVRCGKCVLNCSHGALAYNLREGTPEE 107

Query: 65  LWLKINSEY 73
           ++ +I +E 
Sbjct: 108 IFKEIKAEL 116


>gi|218780439|ref|YP_002431757.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761823|gb|ACL04289.1| Putative electron transport complex, RnfB protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 672

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 10  ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + C     CV+ CP      GE+ L  +  ++C  CG CE  CP   I
Sbjct: 136 VGCLGLGSCVKACPFGALEMGEDGLPRVIAEKCTGCGTCERVCPKGII 183



 Score = 33.6 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI-DCGV-CEPECPVD 53
           V+ E C  C    C  VCP            I  +    DC   C+  CP  
Sbjct: 163 VIAEKCTGCG--TCERVCPKGIINMSSVTRRIIKEYTTNDCTTPCQRACPAG 212


>gi|170724611|ref|YP_001758637.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169809958|gb|ACA84542.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 227

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C+ T CV+VCP    Y+  +   +++   +C+ C  C   CP  
Sbjct: 95  SCQQCESTPCVDVCPTGAAYKDPDTGIVSVDEWKCVGCQYCIAACPYQ 142


>gi|104780949|ref|YP_607447.1| oxidase [Pseudomonas entomophila L48]
 gi|95109936|emb|CAK14641.1| putative oxidase with iron-sulfur cluster [Pseudomonas entomophila
           L48]
          Length = 471

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|73988225|ref|XP_852209.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) [Canis familiaris]
          Length = 253

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK  +   VCP            +G        I+  +CI CG C+  CPVDAI
Sbjct: 152 ERCIACKLHE--AVCPAQAITIQAEPRADGSRRTTRYDIYMTKCIYCGFCQEACPVDAI 208



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 193 CIYCGF--CQEACPVDAIVEGPNF 214


>gi|29346185|ref|NP_809688.1| ferredoxin-type protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568383|ref|ZP_04845794.1| ferredoxin-type protein [Bacteroides sp. 1_1_6]
 gi|29338080|gb|AAO75882.1| ferredoxin-type protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842456|gb|EES70536.1| ferredoxin-type protein [Bacteroides sp. 1_1_6]
          Length = 521

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 1   MTYV--VTENCI----LCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPE 49
           M YV  + ENCI          C E CP          +G     ++ + C+ CG CE  
Sbjct: 424 MGYVVFIEENCIVLTDGTSCGACSEHCPTQAIAMVPYKDGLTLPHVNTEICVGCGGCEYV 483

Query: 50  CPV---DAIKPDTEPGLEL 65
           CP     A+  +  P  + 
Sbjct: 484 CPARPFRAVYIEGNPVQKE 502


>gi|284165379|ref|YP_003403658.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284015034|gb|ADB60985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 446

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE-NFLAI-HPDECIDCGVCEPECPVD 53
            C  C    C +VCP    +  + + L +   D CI C  C+  CP  
Sbjct: 197 PCQHCTDAPCEKVCPTTARHTRDSDGLVLTDYDVCIGCRYCQVACPYG 244


>gi|197302539|ref|ZP_03167594.1| hypothetical protein RUMLAC_01267 [Ruminococcus lactaris ATCC
          29176]
 gi|197298437|gb|EDY32982.1| hypothetical protein RUMLAC_01267 [Ruminococcus lactaris ATCC
          29176]
          Length = 392

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 8  NCILCKHTDCVEVCPVDCFY---EGENFLA--IHPDECIDCGVCEPECPV 52
           C+ C    C +VCP  C     + E FL   +  ++CI CG C   CPV
Sbjct: 16 ECVGC--RSCEQVCPTGCIVFKPDEEGFLYPKVEEEQCIRCGKCLRHCPV 63



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 39 ECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          EC+ C  CE  CP   I    +P  E +L
Sbjct: 16 ECVGCRSCEQVCPTGCIVF--KPDEEGFL 42


>gi|154492651|ref|ZP_02032277.1| hypothetical protein PARMER_02285 [Parabacteroides merdae ATCC
           43184]
 gi|154086956|gb|EDN86001.1| hypothetical protein PARMER_02285 [Parabacteroides merdae ATCC
           43184]
          Length = 501

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPEC- 50
           + ENCI         +C   CP              +      ++ ++CI CG CE  C 
Sbjct: 424 IQENCIVNRDGVTCGNCARHCPTQAILMVAKDPNDPDSPQLPVVNEEKCIGCGACENLCP 483

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 484 SRPFSAIYVE 493



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 21/106 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-------- 57
           T  C  C    C   C   C         I    C+DC  C  +C   AI+         
Sbjct: 221 TSKCNGCGL--CARNCKAACIN--AKVHEIDYSRCVDCMDCIDKCRQGAIRYTRRKTNKA 276

Query: 58  --------DTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                     +P    +  +++  AT       +K  LP   K+DG
Sbjct: 277 ETQTNQPVVDKPDRRKFFTVSALLATSATLKAQEKVQLPD-KKVDG 321



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 15  TDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECPVDAI 55
           T C  +CPV  F    +        I   +C  CG+C   C    I
Sbjct: 194 TYCNTICPVGTFLGLISRFSVFKPVIDTSKCNGCGLCARNCKAACI 239


>gi|307298219|ref|ZP_07578023.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916305|gb|EFN46688.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 605

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 10  ILCKHTDCVEVCPVDCFYEGEN---FLAIHPDECIDCGVCEPECPVDAIK 56
           I C    C   CP      G+N      I   +C  CG+C   CP  AI 
Sbjct: 389 IPCN--PCETSCPAGAISIGDNINSRPIIDYSKCTGCGICATTCPGLAIF 436


>gi|294676711|ref|YP_003577326.1| cbb3-type cytochrome c oxidase accessory protein CcoG [Rhodobacter
           capsulatus SB 1003]
 gi|294475531|gb|ADE84919.1| cytochrome c oxidase, Cbb3-type, accessory protein CcoG
           [Rhodobacter capsulatus SB 1003]
          Length = 486

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP+         L     ECI CG+C   C
Sbjct: 263 DCIDC--MACVNVCPMGIDIRNGQQL-----ECITCGLCIDAC 298


>gi|225028680|ref|ZP_03717872.1| hypothetical protein EUBHAL_02959 [Eubacterium hallii DSM 3353]
 gi|224953990|gb|EEG35199.1| hypothetical protein EUBHAL_02959 [Eubacterium hallii DSM 3353]
          Length = 290

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 15/65 (23%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C+ C    C +VC +D    +  N    HP ECI CG C   CP DAI          
Sbjct: 238 DKCVGC--HQCTKVCKMDVDVIKSPN----HP-ECIRCGACMKACPKDAIHY-------Q 283

Query: 66  WLKIN 70
           ++K N
Sbjct: 284 FIKFN 288


>gi|213421275|ref|ZP_03354341.1| formate hydrogenlyase subunit 2 [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 147

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 14 HTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             C  VCPV+     +  + ++   C+ C +C   CP  AI+ 
Sbjct: 1  DAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEF 44


>gi|157364217|ref|YP_001470984.1| hypothetical protein Tlet_1363 [Thermotoga lettingae TMO]
 gi|157314821|gb|ABV33920.1| protein of unknown function DUF39 [Thermotoga lettingae TMO]
          Length = 443

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C+ C    CV +CP D     +       ++C  C  C   CPV    P  E
Sbjct: 393 ECVDCG--ACVSLCPFDALLLVDGKFTFLREKCTMCLQCSDACPVGVKLPPDE 443



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 36  HPDECIDCGVCEPECPVDA 54
              EC+DCG C   CP DA
Sbjct: 390 DKPECVDCGACVSLCPFDA 408


>gi|150400805|ref|YP_001324571.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013508|gb|ABR55959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 418

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVD---CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + CI C    C +VC VD             I+P  C+ CG+C  ECPV+AI
Sbjct: 310 VNEDACIGC--RICYKVCGVDDTINISSETRMPYINPKLCVRCGLCYNECPVNAI 362



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTE 60
           E C+ C    C   CPVD     E    I  ++CI+C  C   CPV DAIK   E
Sbjct: 126 ELCVNCGL--CKNACPVDAIDYNEKTHYIIDNDCIECMECIKVCPVKDAIKTYDE 178



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 17/69 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGVCEPECP 51
           ++CI C    CVE CP      G                  L I  + C++CG+C+  CP
Sbjct: 82  DSCITC--ALCVESCPTGVLDIGTVKEDTDGRAFSVPKYTNLIIDEELCVNCGLCKNACP 139

Query: 52  VDAIKPDTE 60
           VDAI  + +
Sbjct: 140 VDAIDYNEK 148



 Score = 41.3 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVD 53
          E CI C    C   CP       +N         I  D CI C +C   CP  
Sbjct: 47 EKCISCG--ACAGACPCFAIEMVKNDEYNKELPVIDDDSCITCALCVESCPTG 97



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 10/44 (22%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNI 80
          P++CI CG C   CP  AI+             N EY  + P I
Sbjct: 46 PEKCISCGACAGACPCFAIEMVK----------NDEYNKELPVI 79


>gi|126729567|ref|ZP_01745380.1| NADH dehydrogenase subunit I [Sagittula stellata E-37]
 gi|126709686|gb|EBA08739.1| NADH dehydrogenase subunit I [Sagittula stellata E-37]
          Length = 164

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN----------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 63  ERCIACKL--CEAICPAQAITIDAEPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 119



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  D EP  +
Sbjct: 63 ERCIACKLCEAICPAQAITIDAEPRDD 89



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 104 CIYCGF--CQEACPVDAIVEGPNF 125


>gi|328954778|ref|YP_004372111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coriobacterium glomerans PW2]
 gi|328455102|gb|AEB06296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coriobacterium glomerans PW2]
          Length = 412

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 19/92 (20%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--------------IHPDECIDCGVCEPECPVDA 54
           CI C    C  VC  D     E                  I    C+ CG C   C  DA
Sbjct: 214 CIGC--RACARVCAFDAISFTETRERALAGGATRQIQVAGIDQTRCVGCGRCIGACNQDA 271

Query: 55  IKPDTEPGLELWLKINSEYATQWPNITTKKES 86
           I PD +    +   +N + A     +   + S
Sbjct: 272 IVPDYDQAAAV---LNCKIAEYTKAVVQDRPS 300


>gi|294495923|ref|YP_003542416.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
          mahii DSM 5219]
 gi|292666922|gb|ADE36771.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
          mahii DSM 5219]
          Length = 341

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 15/80 (18%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEG-----------ENFLAIHPDECIDCGVCEPECPVD 53
          + E CI C    CV VCP +    G           + FL I P+ CI CG+C   CP  
Sbjct: 17 IPEKCIGCG--TCVMVCPKETLVIGSVGPVARGLIDKEFLEIRPNTCITCGMCSKVCPTG 74

Query: 54 AIK--PDTEPGLELWLKINS 71
          A++   D +P  E    IN+
Sbjct: 75 ALEMREDGKPVEEKTYLINA 94



 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 13/74 (17%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEG-----------ENFLAIHPDECIDCGVCEPECPV 52
            V ++C+ C    C +VCP  C               +    I  + C+ CG CE  CPV
Sbjct: 99  TVNDDCVHCGL--CEQVCPQGCIEVDQWLSNDNAAKVDGQTTIDQECCVHCGWCESVCPV 156

Query: 53  DAIKPDTEPGLELW 66
           DAI+ +       +
Sbjct: 157 DAIEVEKPFEGTWF 170



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CV+VCP +  +       E  + +A  PD CI CG C   CPV AI
Sbjct: 174 DVCQAC--RTCVDVCPCNALFNPDWEAGERVDKVAQRPDACIYCGACAVSCPVQAI 227



 Score = 39.4 bits (91), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 22/74 (29%)

Query: 8   NCILCKHTDCVEVCPVDCF--------------------YEGENFLAIHPDECIDCGVCE 47
           +C+ C   +CV VCPV+ +                     E      +  D C  CG C 
Sbjct: 268 DCLGCG--NCVIVCPVNAYANKELAAGHLNNMDEKALLEVENGAVNVVDQDVCGSCGACA 325

Query: 48  PECPVDAIKPDTEP 61
             CP +AI  +   
Sbjct: 326 MICPTNAIWLEKRE 339



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIK-PDTEPG 62
           E C+ C    C  VCPVD        E       D C  C  C   CP +A+  PD E G
Sbjct: 142 ECCVHCGW--CESVCPVDAIEVEKPFEGTWFRDEDVCQACRTCVDVCPCNALFNPDWEAG 199

Query: 63  LE 64
             
Sbjct: 200 ER 201


>gi|288940311|ref|YP_003442551.1| RnfABCDGE type electron transport complex subunit B [Allochromatium
           vinosum DSM 180]
 gi|288895683|gb|ADC61519.1| electron transport complex, RnfABCDGE type, B subunit
           [Allochromatium vinosum DSM 180]
          Length = 189

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++  E CI C  T C++ CPVD        L  +   EC  C +C   CPV  I
Sbjct: 103 AFIDPELCIGC--TRCIQACPVDAIIGAAKQLHAVLNSECTGCELCVEPCPVACI 155



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
             +   I P+ CI C  C   CPVDAI
Sbjct: 99  APSVAFIDPELCIGCTRCIQACPVDAI 125


>gi|291286150|ref|YP_003502966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883310|gb|ADD67010.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 204

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           +C  C +  C   CPV   Y  E +  + ++ D C D   C   CP  A +   +   
Sbjct: 58  SCNHCANPACTAACPVGAIYKREEDGIVIVNRDLCQDIKACAVACPYGAPQFGDDDSE 115


>gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum]
          Length = 617

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ E+C  C    C  VCP      E      I    CI C  C   C   AI
Sbjct: 566 VIEEDCTTCGL--CEPVCPSGSVTWEKGEVAHIDLTTCIRCKACVDACKFRAI 616



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CP     +   ++ I  D C  CG+CEP CP  ++  +
Sbjct: 553 CPGTVCNDLIKYVVIEED-CTTCGLCEPVCPSGSVTWE 589


>gi|30061070|gb|AAP19909.1| nitrite reductase [Haemophilus influenzae]
 gi|30061072|gb|AAP19910.1| nitrite reductase [Haemophilus influenzae]
 gi|30061096|gb|AAP19922.1| nitrite reductase [Haemophilus influenzae]
 gi|30061100|gb|AAP19924.1| nitrite reductase [Haemophilus influenzae]
 gi|30061104|gb|AAP19926.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C +  CV VCP    F + E  +  +H D CI C  C   CP 
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPY 85


>gi|77918234|ref|YP_356049.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544317|gb|ABA87879.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 398

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            Y   + C  C    CV+ CP          L I    CI C  C+  CP  A
Sbjct: 311 PYADPQLCRHCGL--CVKHCPPQAMVLKHGRLHIDYRRCIHCFCCQELCPYGA 361


>gi|5114277|gb|AAD40249.1|AF156174_1 iron-sulfur protein [Prosthecochloris vibrioformis]
          Length = 228

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  ++           EG     I  D CI C  C    EC
Sbjct: 131 FIIENLCVGCGL--CLDKCPPKINAIGYKFYGDVQEGGFRCYIDQDACISCSACFSGDEC 188

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 189 PSGALIEQLPDGE 201


>gi|16761464|ref|NP_457081.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765870|ref|NP_461485.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29140839|ref|NP_804181.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181114|ref|YP_217531.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167549421|ref|ZP_02343180.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992677|ref|ZP_02573773.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232125|ref|ZP_02657183.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238290|ref|ZP_02663348.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243336|ref|ZP_02668268.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168466692|ref|ZP_02700546.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821468|ref|ZP_02833468.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444809|ref|YP_002041812.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449446|ref|YP_002046611.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471798|ref|ZP_03077782.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735811|ref|YP_002115613.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249765|ref|YP_002147505.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263863|ref|ZP_03163937.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244708|ref|YP_002216616.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388883|ref|ZP_03215495.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929566|ref|ZP_03220640.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353648|ref|YP_002227449.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857958|ref|YP_002244609.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213163624|ref|ZP_03349334.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425304|ref|ZP_03358054.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583918|ref|ZP_03365744.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213618813|ref|ZP_03372639.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646418|ref|ZP_03376471.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|224582910|ref|YP_002636708.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912671|ref|ZP_04656508.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825397|ref|ZP_06544634.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|60391778|sp|P0A1Y2|ASRC_SALTY RecName: Full=Anaerobic sulfite reductase subunit C
 gi|60391779|sp|P0A1Y3|ASRC_SALTI RecName: Full=Anaerobic sulfite reductase subunit C
 gi|25387614|pir||AE0825 anaerobic sulfite reductase chain C (EC 1.8.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421096|gb|AAL21444.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503764|emb|CAD02753.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136464|gb|AAO68030.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128747|gb|AAX66450.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194403472|gb|ACF63694.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407750|gb|ACF67969.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458162|gb|EDX47001.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711313|gb|ACF90534.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630754|gb|EDX49346.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213468|gb|ACH50865.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242118|gb|EDY24738.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288804|gb|EDY28177.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197939224|gb|ACH76557.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605981|gb|EDZ04526.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321285|gb|EDZ06485.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273429|emb|CAR38405.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325275|gb|EDZ13114.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329116|gb|EDZ15880.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333579|gb|EDZ20343.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337685|gb|EDZ24449.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205341941|gb|EDZ28705.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709761|emb|CAR34113.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224467437|gb|ACN45267.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247746|emb|CBG25574.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994674|gb|ACY89559.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159099|emb|CBW18613.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913539|dbj|BAJ37513.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087048|emb|CBY96817.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222746|gb|EFX47817.1| Anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613320|gb|EFY10262.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620476|gb|EFY17341.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625056|gb|EFY21885.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629500|gb|EFY26276.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633887|gb|EFY30626.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635493|gb|EFY32204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639831|gb|EFY36510.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644283|gb|EFY40827.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652250|gb|EFY48607.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654842|gb|EFY51159.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658230|gb|EFY54496.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322669679|gb|EFY65825.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673314|gb|EFY69419.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674897|gb|EFY70984.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682920|gb|EFY78938.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685581|gb|EFY81576.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715604|gb|EFZ07175.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130880|gb|ADX18310.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194692|gb|EFZ79882.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200376|gb|EFZ85457.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201276|gb|EFZ86343.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208346|gb|EFZ93286.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211578|gb|EFZ96416.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216010|gb|EGA00742.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221917|gb|EGA06311.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225602|gb|EGA09829.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229319|gb|EGA13443.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235366|gb|EGA19450.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237448|gb|EGA21511.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245203|gb|EGA29204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248777|gb|EGA32704.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254043|gb|EGA37864.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254908|gb|EGA38700.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262013|gb|EGA45578.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267797|gb|EGA51278.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269644|gb|EGA53096.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624371|gb|EGE30716.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628750|gb|EGE35093.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989477|gb|AEF08460.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 337

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI C    CV+ C    V C              CI CG C   CP  A     +P 
Sbjct: 177 ADRCIGCG--ACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLA--WQRKPD 232

Query: 63  LELWLKINSEYATQWPNI 80
               +++    + + P +
Sbjct: 233 QLWQVRLGGRTSKKTPRV 250


>gi|270158106|ref|ZP_06186763.1| NADH-quinone oxidoreductase I subunit [Legionella longbeachae
           D-4968]
 gi|289163629|ref|YP_003453767.1| NADH-quinone oxidoreductase chain I [Legionella longbeachae NSW150]
 gi|269990131|gb|EEZ96385.1| NADH-quinone oxidoreductase I subunit [Legionella longbeachae
           D-4968]
 gi|288856802|emb|CBJ10613.1| NADH-quinone oxidoreductase chain I [Legionella longbeachae NSW150]
          Length = 166

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI+CG+CE  CPVD+I
Sbjct: 65  ERCIACKL--CEAVCPALAITIEAQPREDGTRRTTRYDIDMFKCINCGLCEESCPVDSI 121



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + +P  +
Sbjct: 65 ERCIACKLCEAVCPALAITIEAQPRED 91


>gi|222110035|ref|YP_002552299.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Acidovorax ebreus TPSY]
 gi|221729479|gb|ACM32299.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
          ebreus TPSY]
          Length = 85

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +  + G+    I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNEAIFLGQEHYEIEPSKCTECVGHFDEPQCVAICPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP +AI 
Sbjct: 7  DECINCDVCEPECPNEAIF 25


>gi|83589025|ref|YP_429034.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83571939|gb|ABC18491.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 251

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C  C +  CV+ CP            + +    C  CG C   CP  A++
Sbjct: 165 CRQCGNAACVKACPEGALSRDARTRAVILDRARCTGCGSCARACPFQALR 214


>gi|84997525|ref|XP_953484.1| RNAse L inhibitor protein [Theileria annulata strain Ankara]
 gi|65304480|emb|CAI76859.1| RNAse L inhibitor protein, putative [Theileria annulata]
          Length = 636

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 11 LCKHTDCVEVCPVDCF--YEGENFLAIHPDE---------CIDCGVCEPECPVDAI 55
           CK   C + C   C     G+  + + P           CI CG+C  +CP +AI
Sbjct: 28 KCKPKKCRQECKRTCPVTKTGKQCIEVDPTSKIAFISEHLCIGCGICVKKCPFEAI 83


>gi|125972947|ref|YP_001036857.1| putative PAS/PAC sensor protein [Clostridium thermocellum ATCC
          27405]
 gi|256005703|ref|ZP_05430659.1| putative PAS/PAC sensor protein [Clostridium thermocellum DSM
          2360]
 gi|281417158|ref|ZP_06248178.1| putative PAS/PAC sensor protein [Clostridium thermocellum JW20]
 gi|125713172|gb|ABN51664.1| putative PAS/PAC sensor protein [Clostridium thermocellum ATCC
          27405]
 gi|255990334|gb|EEU00460.1| putative PAS/PAC sensor protein [Clostridium thermocellum DSM
          2360]
 gi|281408560|gb|EFB38818.1| putative PAS/PAC sensor protein [Clostridium thermocellum JW20]
 gi|316940817|gb|ADU74851.1| putative PAS/PAC sensor protein [Clostridium thermocellum DSM
          1313]
          Length = 556

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGLEL 65
          NC  C    C+  CPV      +    I  DEC+ CG C   CP +A  I+ D E   +L
Sbjct: 11 NCKNC--YKCIRHCPVKSLKFTDGQAHIVRDECVLCGECYVVCPQNAKQIRSDVEKAKQL 68

Query: 66 WLKINSEYATQWPN 79
           LK +  YA+  P+
Sbjct: 69 VLKYDV-YASIAPS 81


>gi|329909995|ref|ZP_08275180.1| NADH-ubiquinone oxidoreductase chain I [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546332|gb|EGF31351.1| NADH-ubiquinone oxidoreductase chain I [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 162

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESEQRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD 87


>gi|325479026|gb|EGC82127.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 267

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C +VCP D  +  +    +  ++C+ CG C   CP + I
Sbjct: 143 CVGCG--SCEKVCPFDAIHVKDGVAVVDREKCVACGKCVATCPKNII 187


>gi|296105416|ref|YP_003615562.1| formate dehydrogenase beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059875|gb|ADF64613.1| formate dehydrogenase beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 300

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVNVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEDMK 193


>gi|291525318|emb|CBK90905.1| Coenzyme F420-reducing hydrogenase, beta subunit [Eubacterium
          rectale DSM 17629]
          Length = 383

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPV 52
          ++ + C  C+   C  VCP  C      YEG     ++ ++C++C +C   CPV
Sbjct: 5  IIKDRCTGCEG--CASVCPTKCIDMVQNYEGFFMPQVNSNKCVNCKMCINICPV 56


>gi|255658358|ref|ZP_05403767.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
 gi|260849688|gb|EEX69695.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
          Length = 286

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
            +NC  C    C  VCP         E  + +   +C+ CG C   CP DA
Sbjct: 162 ADNCTFCGV--CEAVCPEKAITVKADEGKVVLDESKCVYCGKCIKSCPTDA 210



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPG 62
           D C  CGVCE  CP  AI    + G
Sbjct: 163 DNCTFCGVCEAVCPEKAITVKADEG 187


>gi|225568281|ref|ZP_03777306.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
          15053]
 gi|225163000|gb|EEG75619.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
          15053]
          Length = 88

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          E CI C    C+  CPV+   + +    I  D C  CG+C  ECP +AI    E G
Sbjct: 34 ETCIACG--TCLLYCPVNSIRKTDGTFTICYDYCKGCGICAHECPKNAITMIPEEG 87


>gi|152972689|ref|YP_001337835.1| formate dehydrogenase-O, Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206577740|ref|YP_002241240.1| formate dehydrogenase-O, iron-sulfur subunit [Klebsiella pneumoniae
           342]
 gi|238892294|ref|YP_002917028.1| formate dehydrogenase-O beta subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041666|ref|ZP_06014858.1| formate dehydrogenase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288937878|ref|YP_003441937.1| formate dehydrogenase subunit beta [Klebsiella variicola At-22]
 gi|290513102|ref|ZP_06552465.1| formate dehydrogenase, beta subunit [Klebsiella sp. 1_1_55]
 gi|150957538|gb|ABR79568.1| formate dehydrogenase-O, Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206566798|gb|ACI08574.1| formate dehydrogenase-O, iron-sulfur subunit [Klebsiella pneumoniae
           342]
 gi|238544610|dbj|BAH60961.1| formate dehydrogenase-O beta subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040928|gb|EEW42007.1| formate dehydrogenase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288892587|gb|ADC60905.1| formate dehydrogenase, beta subunit [Klebsiella variicola At-22]
 gi|289774484|gb|EFD82489.1| formate dehydrogenase, beta subunit [Klebsiella sp. 1_1_55]
          Length = 300

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVTVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEDMK 193


>gi|56461673|ref|YP_156954.1| Iron-sulfur cluster-binding protein [Idiomarina loihiensis L2TR]
 gi|56180683|gb|AAV83405.1| Iron-sulfur cluster-binding protein [Idiomarina loihiensis L2TR]
          Length = 476

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           CI C    CV+VCP                ECIDCG C   C
Sbjct: 273 CIDC--YMCVQVCPTGIDIRNGLQY-----ECIDCGACIDAC 307



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCFY--------------------EGENFLAIHPDE-----CIDCGVCEPECP 51
           C  +CP   F                      G       P E     CIDC +C   CP
Sbjct: 225 CTHMCPYARFQSAMFDKDTYTVSYDAERGEPRGPRSRKADPAEKGLGHCIDCYMCVQVCP 284

Query: 52  VD 53
             
Sbjct: 285 TG 286


>gi|56412572|ref|YP_149647.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361507|ref|YP_002141143.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126829|gb|AAV76335.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092983|emb|CAR58415.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI C    CV+ C    V C              CI CG C   CP  A     +P 
Sbjct: 177 ADRCIGCG--ACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLA--WQRKPD 232

Query: 63  LELWLKINSEYATQWPNI 80
               +++    + + P +
Sbjct: 233 QLWQVRLGGRTSKKTPRV 250


>gi|117923565|ref|YP_864182.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Magnetococcus sp. MC-1]
 gi|117607321|gb|ABK42776.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Magnetococcus sp. MC-1]
          Length = 85

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCG------VCEPEC 50
          M  ++ E+C  C    C+  CP +   +G +       IHPD C +C        C   C
Sbjct: 1  MALIINEDCTNCDV--CLPECPNEAITDGSDVDSDIYYIHPDLCSECKGSFDEPQCVSVC 58

Query: 51 PVDAIKPDTEP 61
          PV+ I+ D + 
Sbjct: 59 PVECIEQDPDH 69


>gi|295101845|emb|CBK99390.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
          subunits [Faecalibacterium prausnitzii L2-6]
          Length = 56

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + V++ C+ C    C   CPV           ++ D CIDCG CE  CP  AI  +
Sbjct: 1  MAHKVSDACVGCG--ACEGACPVGAVAVEGGVAVVNADACIDCGACEGACPTGAITAE 56


>gi|227329693|ref|ZP_03833717.1| respiratory nitrate reductase 1 beta chain [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 521

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|224369477|ref|YP_002603641.1| RnfB [Desulfobacterium autotrophicum HRM2]
 gi|223692194|gb|ACN15477.1| RnfB [Desulfobacterium autotrophicum HRM2]
          Length = 273

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
              DCVE C  D  +  +    ++ D CI CG C   CP
Sbjct: 144 GFGDCVEACKYDAIHVEDGLAVVNYDHCIGCGACVKACP 182


>gi|56415882|ref|YP_152957.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364811|ref|YP_002144448.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56130139|gb|AAV79645.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096288|emb|CAR61888.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 300

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRFNPEDN 155



 Score = 38.2 bits (88), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP +   F   +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFNVPRFNPEDNRVY----KCTLCVDRVTVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEDMK 193


>gi|45658784|ref|YP_002870.1| hypothetical protein LIC12957 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294827694|ref|NP_710811.2| oxidoreductase-like protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45602028|gb|AAS71507.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385537|gb|AAN47829.2| oxidoreductase-related protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 386

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 8   NCILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVD 53
            CI C   +C   CP++C       G+       D CI+CG+C   CP  
Sbjct: 321 PCIECG--ECTYNCPLECNPISLVNGQGKFF--ADACIECGICTYLCPSG 366


>gi|56478184|ref|YP_159773.1| NADH dehydrogenase subunit I [Aromatoleum aromaticum EbN1]
 gi|81356980|sp|Q5P1E2|NUOI_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56314227|emb|CAI08872.1| NADH dehydrogenase I , chain I [Aromatoleum aromaticum EbN1]
          Length = 161

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVDA+
Sbjct: 60  ERCIACKL--CEAVCPALAITIESEQRDDGSRRTKRYDIDLTKCIFCGFCEEACPVDAV 116



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 60 ERCIACKLCEAVCPALAITIESEQRDD 86


>gi|332096054|gb|EGJ01059.1| 4Fe-4S binding domain protein [Shigella boydii 3594-74]
          Length = 166

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 61  ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 108


>gi|325959018|ref|YP_004290484.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330450|gb|ADZ09512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 252

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGEN--------FLAIHPDECIDCGVCEPECPVD 53
             V  ++CI C    C  VC  +                LAI  D C+ CG+CE  CPV+
Sbjct: 157 AVVDKDSCIGCG--ACANVCGENAVSLERRLGSVFKTKKLAIDEDICVACGMCEENCPVE 214

Query: 54  AIKPD 58
           AIK +
Sbjct: 215 AIKLE 219



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 9   CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C   +CV+ CP        EG     +  D CI CG C   C  +A+  +   G
Sbjct: 134 CTSCG--NCVKFCPTGAIKLFDEGP--AVVDKDSCIGCGACANVCGENAVSLERRLG 186



 Score = 41.3 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           + C+ C    C E CPV+        +    ++CI C VC  +CPV A+  + 
Sbjct: 199 DICVACG--MCEENCPVEAIKLENGKIVYSKNKCITCEVCSKKCPVAALNVEE 249



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           ++  C+ C    C + CPV+   E +    A   D C+ C +C   CPV+AIK
Sbjct: 45 TISPECVRCNL--CAQECPVNAIDEAKLTKPAKILDNCVKCEICSQTCPVNAIK 96



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 27/84 (32%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-------------------------NFLAIHPDE 39
           + +NC+ C+   C + CPV+     E                           + + P +
Sbjct: 76  ILDNCVKCE--ICSQTCPVNAIKVIESKSDLEEDVTYKLKTKKVPHRTLRMEKIDVDPVK 133

Query: 40  CIDCGVCEPECPVDAIKPDTEPGL 63
           C  CG C   CP  AIK   E   
Sbjct: 134 CTSCGNCVKFCPTGAIKLFDEGPA 157


>gi|306819989|ref|ZP_07453640.1| electron transport complex protein RnfB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552025|gb|EFM39965.1| electron transport complex protein RnfB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 340

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+VCP D      N   IH ++C  C  C  +CP   I
Sbjct: 216 CIGC--QMCVKVCPFDAITFENNLPTIHYEKCKQCNKCVEKCPTKTI 260



 Score = 42.4 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 18/83 (21%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIH----------PDEC----IDCGV 45
            +V  + C+ C    C+EVCP            + I+           D+C    I C +
Sbjct: 164 AHVDRDKCVACG--KCIEVCPKSIIEWIPYNQQVYIYCKSREKGKDVKDKCSVGCIGCQM 221

Query: 46  CEPECPVDAIKPDTEPGLELWLK 68
           C   CP DAI  +       + K
Sbjct: 222 CVKVCPFDAITFENNLPTIHYEK 244



 Score = 42.4 bits (99), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
               CV  C  D  Y G + +  +  D+C+ CG C   CP   I+       ++++
Sbjct: 143 GFGTCVRACKFDAIYIGTDGVAHVDRDKCVACGKCIEVCPKSIIEW-IPYNQQVYI 197


>gi|306819962|ref|ZP_07453613.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551998|gb|EFM39938.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 305

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++ CI C    C +VC V      + ++    ++C  CG C   CP  A
Sbjct: 58  SDQCIRCG--SCFKVCKVGAINLDKEYIV-DREKCTSCGECVLVCPSSA 103



 Score = 37.1 bits (85), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          D+CI CG C   C V AI  D E
Sbjct: 59 DQCIRCGSCFKVCKVGAINLDKE 81


>gi|294785473|ref|ZP_06750761.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_27]
 gi|294487187|gb|EFG34549.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_27]
          Length = 324

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A
Sbjct: 172 DRCVACG--ACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSA 220


>gi|256752102|ref|ZP_05492969.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749011|gb|EEU62048.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 291

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C E+C  D          ++P  C  CG+C  +CPV+AIK
Sbjct: 66  DKCIECGL--CEELCRFDAISN----FEVNPYYCEGCGLCMYKCPVEAIK 109



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C  DAI
Sbjct: 57 GKETAVIDKDKCIECGLCEELCRFDAI 83


>gi|322418741|ref|YP_004197964.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
 gi|320125128|gb|ADW12688.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
          M18]
          Length = 448

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 13/87 (14%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDA--IKPDT 59
          +   CI C    C   CPVD       GE  + +   +CI C  C   CP  A  I    
Sbjct: 17 IEGKCIACGAR-CQSSCPVDGILMSDAGEPEIVL--SKCIGCLKCVKACPGSALEIFYSK 73

Query: 60 EPGLELWLKINSEYATQWPNITTKKES 86
          E      L+I ++ A Q        + 
Sbjct: 74 EE-----LEILAQLAGQQDVAEEDADP 95


>gi|258404551|ref|YP_003197293.1| response regulator receiver protein [Desulfohalobium retbaense DSM
            5692]
 gi|257796778|gb|ACV67715.1| response regulator receiver protein [Desulfohalobium retbaense DSM
            5692]
          Length = 1142

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 9    CILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C LC    CV VCP            + +    C  CG C   CP  A         ++ 
Sbjct: 1074 CSLC--QACVNVCPYGARSLDWENEQIVVDEILCQGCGACTAVCPNSAAVLRGFQDEQVL 1131

Query: 67   LKINSEY 73
             +I++  
Sbjct: 1132 AEIDASL 1138



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 20/70 (28%)

Query: 4   VVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECIDCGV 45
           V    CI C    C  VCPV   D F  G                N   +    C  C  
Sbjct: 113 VDAHKCISCGQ--CSTVCPVRIPDTFNAGLGERAAIYLPVPHNIPNQYVVDLAHCTRCWK 170

Query: 46  CEPECPVDAI 55
           C   CP  A+
Sbjct: 171 CAEACPTGAV 180


>gi|229815904|ref|ZP_04446228.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
 gi|229808599|gb|EEP44377.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
          Length = 421

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 8   NCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ CK        C++VCPV+   E E+      D C  CG+C   CP +A
Sbjct: 58  PCLACKSEKSSCHACMDVCPVNAI-EIEDGAIDVLDSCRKCGLCVAACPTEA 108



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C +C    CVE CP   C       LAI P  CI CG+C   C   A+K     G EL
Sbjct: 320 DRCTMCG--ACVEACPTFACDLLNGGKLAIEPTYCIGCGLCAEVCSDHALKMVERDGSEL 377


>gi|121535135|ref|ZP_01666951.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306244|gb|EAX47170.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 462

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 7   ENCILC--KHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
           + C  C      C + CPV      E   L I+ ++CI  G C   C   A
Sbjct: 92  DACRSCPEGDRACEKACPVAAITRDELGRLRINYEKCIGDGHCVDVCDFGA 142


>gi|22213650|emb|CAC86940.1| Iron-sulfur protein [Acidianus ambivalens]
          Length = 473

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 5   VTENC---ILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           +++ C     C  T C + CP +    + ++ ++I   +C  CG+C   CP+ AI+  + 
Sbjct: 136 ISDMCKLYRAC--TLCQDSCPYNAIKVDKKSGVSIDYTKCTACGLCVSSCPMSAIQFPSV 193

Query: 61  PGLELW 66
               ++
Sbjct: 194 SQQAIF 199



 Score = 40.9 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 10  ILCKHTDCVEVCPVDC----FYEGENFLAIHPDECIDCGVCEPECPVD 53
           I      C + CP       + +    L+ +PD+CI C +C   CP  
Sbjct: 326 IHALCGKCAKWCPTSALTIEYTDSGEKLSFNPDKCIGCKICINVCPEG 373


>gi|78185518|ref|YP_377953.1| putative LdpA protein [Synechococcus sp. CC9902]
 gi|78169812|gb|ABB26909.1| putative LdpA protein [Synechococcus sp. CC9902]
          Length = 343

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
             C  VCP +    G+     +P  C  CG C P CP   I+ 
Sbjct: 109 RPCQRVCPAEAI--GDRGAV-NPLLCYGCGRCLPACPYGLIEE 148


>gi|21227956|ref|NP_633878.1| flavoprotein [Methanosarcina mazei Go1]
 gi|20906380|gb|AAM31550.1| Archaeal flavoprotein [Methanosarcina mazei Go1]
          Length = 239

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MTYVVTE-NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           M Y +    C  C+     E CP +   E       I   +C  CG+C+  CP +AIK
Sbjct: 144 MPYNIDRKQCKHCETCPPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELCPYNAIK 201


>gi|86131880|ref|ZP_01050477.1| cytochrome c oxidase accessory protein CcoG [Dokdonia donghaensis
           MED134]
 gi|85817702|gb|EAQ38876.1| cytochrome c oxidase accessory protein CcoG [Dokdonia donghaensis
           MED134]
          Length = 473

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 21/82 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV VCP          L     EC++C  C   C         P   I+  
Sbjct: 269 DCIDC--FACVHVCPTGIDIRNGTQL-----ECVNCTACIDACDHMMEAVNLPTGLIRYA 321

Query: 59  TEPGLELWLKINSEYATQWPNI 80
           +E  +E       E     P +
Sbjct: 322 SEDNIEK-----KEKFKFTPRL 338


>gi|189499286|ref|YP_001958756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189494727|gb|ACE03275.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 232

 Score = 47.8 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 18/74 (24%)

Query: 3   YVVTEN-CILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVC--EPE 49
           Y + EN C+ C    C++ CP  V+           EG     I  D CI C  C    E
Sbjct: 134 YFILENLCVGCGL--CLDKCPPKVNAIGYKFYGDVQEGGFRCYIDQDACISCSACFSSDE 191

Query: 50  CPVDA---IKPDTE 60
           CP  A   I PD E
Sbjct: 192 CPSGALLEILPDGE 205


>gi|308187894|ref|YP_003932025.1| nitrate reductase beta chain [Pantoea vagans C9-1]
 gi|308058404|gb|ADO10576.1| nitrate reductase beta chain [Pantoea vagans C9-1]
          Length = 514

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|297569602|ref|YP_003690946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925517|gb|ADH86327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 188

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCP--VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +V  + C+ C    CV VCP  +    +G     I   EC  CG+C  ECP  AIK + 
Sbjct: 118 AWVERDQCVSCL--TCVRVCPWRIPVIDQGGR-AHIDAKECRACGICPEECPAGAIKLNQ 174

Query: 60  EPGLEL 65
                L
Sbjct: 175 SADERL 180


>gi|256830116|ref|YP_003158844.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579292|gb|ACU90428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 669

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ CK   C+ +CP       E      I+   C  CG C   CP  A +      ++
Sbjct: 581 DICVGCK--MCIGLCPYSAIEFDERRHIAVINEAMCKGCGSCAGHCPSGAAQIKHFRQVQ 638

Query: 65  LWLKINSEYATQWPNI 80
           ++ +I+     + P+I
Sbjct: 639 VFNEIDGLLDRK-PDI 653



 Score = 42.1 bits (98), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 25/87 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFL------------------AIHPDECI--- 41
           YV  + C  C    C+E CP     E E  L                   I  + C    
Sbjct: 238 YVREDICTGCG--ACLEKCPTKVVSEFEEGLGMRRAIYRNSPQAVPSTPVIDAEHCKMLT 295

Query: 42  --DCGVCEPECPVDAIKPDTEPGLELW 66
              CG+C+  CP  AI    +   E++
Sbjct: 296 KGKCGICQKTCPTGAIDFTQQDRKEVY 322



 Score = 41.7 bits (97), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTE 60
           I+PD C+ C +C   CP  AI+ D  
Sbjct: 578 INPDICVGCKMCIGLCPYSAIEFDER 603


>gi|239623493|ref|ZP_04666524.1| electron transport complex [Clostridiales bacterium 1_7_47_FAA]
 gi|239521524|gb|EEQ61390.1| electron transport complex [Clostridiales bacterium 1_7_47FAA]
          Length = 262

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C + C  D  +  +N   I  ++C +CG C  +CPV  I+
Sbjct: 217 CIGC--TLCTKQCEFDAIHMEDNLAVIDYEKCTNCGKCAEKCPVKVIQ 262



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  CV+ C  D  +  +    +  ++C+ CG C   CP   I+
Sbjct: 145 GYGSCVKACAFDAIHVVDGVAVVDKEKCVACGKCVSSCPNHLIE 188


>gi|153005613|ref|YP_001379938.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029186|gb|ABS26954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 426

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFY-------EGENFLA--IHPDECIDCGVCEPECPVDAI 55
            C  C+   CV VCPV+                   +  D C+ CGVC   C   AI
Sbjct: 292 ACNGCE--KCVRVCPVEAMSAVSANDPRHPKRTVARLDEDRCLGCGVCVRACAPRAI 346


>gi|157373383|ref|YP_001471983.1| twin-arginine translocation pathway signal [Shewanella sediminis
           HAW-EB3]
 gi|157315757|gb|ABV34855.1| twin-arginine translocation pathway signal [Shewanella sediminis
           HAW-EB3]
          Length = 225

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C+ T CV+VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 93  SCQQCEDTPCVKVCPTGAAYKDPETGIVSVDSWKCVGCQYCIAACPYQ 140


>gi|118497625|ref|YP_898675.1| iron-sulfur cluster-binding protein [Francisella tularensis subsp.
           novicida U112]
 gi|195536326|ref|ZP_03079333.1| electron transport complex, rnfaBcdge type, b subunit family
           [Francisella tularensis subsp. novicida FTE]
 gi|254374440|ref|ZP_04989922.1| hypothetical protein FTDG_00609 [Francisella novicida GA99-3548]
 gi|118423531|gb|ABK89921.1| iron-sulfur cluster-binding protein [Francisella novicida U112]
 gi|151572160|gb|EDN37814.1| hypothetical protein FTDG_00609 [Francisella novicida GA99-3548]
 gi|194372803|gb|EDX27514.1| electron transport complex, rnfaBcdge type, b subunit family
           [Francisella tularensis subsp. novicida FTE]
 gi|332678332|gb|AEE87461.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           cf. novicida Fx1]
          Length = 209

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|126700933|ref|YP_001089830.1| hydrogenase [Clostridium difficile 630]
 gi|115252370|emb|CAJ70211.1| Iron hydrogenase [Clostridium difficile]
          Length = 461

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 1  MTYVV----TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPEC 50
          MT+++     + C  C   +C +VCPV+   EGE      I+ D C+ CG C   C
Sbjct: 1  MTFMIINIDKDLCTGC--RECSKVCPVNAI-EGEEGKPQEINLDRCVMCGQCVQTC 53



 Score = 39.7 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          I  D C  C  C   CPV+AI+ +     E
Sbjct: 8  IDKDLCTGCRECSKVCPVNAIEGEEGKPQE 37


>gi|33594448|ref|NP_882092.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33597856|ref|NP_885499.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33564523|emb|CAE43838.1| putative ferredoxin [Bordetella pertussis Tohama I]
 gi|33574285|emb|CAE38618.1| putative ferredoxin [Bordetella parapertussis]
 gi|332383859|gb|AEE68706.1| ferredoxin [Bordetella pertussis CS]
          Length = 213

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           V+ E  CI C  T C++ CPVD        +  +  D C  C +C   CPVD I  D  P
Sbjct: 81  VIDEAHCIGC--TLCMKACPVDAIVGANKRMHTVLADWCTGCDLCVAPCPVDCI--DMRP 136

Query: 62  GLELWLK 68
              +W +
Sbjct: 137 AARVWSE 143


>gi|120010|sp|P00202|FER_METBA RecName: Full=Ferredoxin
          Length = 59

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
          V  + C  C    CV+ CP D     E      +  DEC++CG CE  CP  AIK + 
Sbjct: 4  VNADECSGCG--TCVDECPNDAITLDEEKGIAVVDNDECVECGACEEACPNQAIKVEE 59


>gi|323486698|ref|ZP_08092019.1| hypothetical protein HMPREF9474_03770 [Clostridium symbiosum
           WAL-14163]
 gi|323400079|gb|EGA92456.1| hypothetical protein HMPREF9474_03770 [Clostridium symbiosum
           WAL-14163]
          Length = 263

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ C  D  +   N   I  ++C +CG C  +CPV  I
Sbjct: 218 CIGC--TLCIKQCEDDAIHMDNNLAVIDYEKCTNCGKCAAKCPVKVI 262



 Score = 41.3 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
               CV  C  D  +  +    +  ++C+ CG C   CP
Sbjct: 146 GFGSCVTACQFDAIHVVDGIAVVDKEKCVACGKCVDACP 184


>gi|270262316|ref|ZP_06190588.1| nitrate reductase, beta subunit [Serratia odorifera 4Rx13]
 gi|270044192|gb|EFA17284.1| nitrate reductase, beta subunit [Serratia odorifera 4Rx13]
          Length = 514

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|288931625|ref|YP_003435685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893873|gb|ADC65410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 228

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            V  NC+ C+   C   C    V    + E  +  I  ++CI C  C   CP  A + 
Sbjct: 52  FVPMNCMHCEDPPCKRACDAIGVGAITKNEYGVVLIDYEKCIGCKYCIAVCPYGAPQY 109


>gi|288932139|ref|YP_003436199.1| ABC transporter [Ferroglobus placidus DSM 10642]
 gi|288894387|gb|ADC65924.1| ABC transporter related protein [Ferroglobus placidus DSM 10642]
          Length = 587

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 1  MTYVVT----ENCI--LCKHTDCVEVCP-VDCFYEG---ENFLAIHPDECIDCGVCEPEC 50
          M+Y +     + C    C H +C++ CP V    E    E    I  + C+ CG+C  +C
Sbjct: 1  MSYRIAVVDKDRCQPKKCSH-ECLKYCPKVRTGDETIKIEEKAVISEELCVGCGICVKKC 59

Query: 51 PVDAI 55
          P  AI
Sbjct: 60 PFKAI 64


>gi|222054300|ref|YP_002536662.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563589|gb|ACM19561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 427

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 11/70 (15%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLA---------IHPDECIDCGVCEPECP 51
           +  V   +C  C    C ++CP+                    ++ D C+ CG+C   C 
Sbjct: 284 LPVVDAHSCSGCG--RCADICPIGAISVVSKHEVDGVPRTSGVVNGDICLGCGICVRSCS 341

Query: 52  VDAIKPDTEP 61
             AIK    P
Sbjct: 342 ATAIKLVPRP 351


>gi|121533913|ref|ZP_01665739.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307424|gb|EAX48340.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 184

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP 57
           C  C+   C++ CP       + +  + +   +C  C +C   CP  A+ P
Sbjct: 60  CRHCQDAACLKACPSGAMRRSDEWQTVYVDQSQCRGCWMCVMVCPFGAVTP 110



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP-DECIDCG--VCEPECPVDAIKPDT 59
           YV    C  C    CV VCP         +   H  D C+D     C   CP  A+    
Sbjct: 87  YVDQSQCRGC--WMCVMVCPFGAVTPLPAYKVAHKCDACVDMEEPACVASCPTGALYYGD 144

Query: 60  EPGLEL 65
           E   E 
Sbjct: 145 EAAYEK 150


>gi|57235053|ref|YP_180939.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
          195]
 gi|57225501|gb|AAW40558.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
          195]
          Length = 84

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVD 53
          M++ +T++CI C    C   CP     EGE    I P+ C +C G      C   CPVD
Sbjct: 1  MSFKITDDCISCG--ACEPECPNKAISEGETIYIIDPERCSECVGAFETPQCVEICPVD 57



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 38 DECIDCGVCEPECPVDAI 55
          D+CI CG CEPECP  AI
Sbjct: 7  DDCISCGACEPECPNKAI 24


>gi|303240984|ref|ZP_07327494.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302591409|gb|EFL61147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 297

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
            ++  + C  C    C + CPVD    G     I   ECI+CG C  +C
Sbjct: 249 AHIDKKLCTNCGL--CQKSCPVDAIENG----VIRQSECINCGECRSKC 291



 Score = 41.3 bits (96), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 11/51 (21%)

Query: 17  CVEVCPVDCFYEGENFL-----------AIHPDECIDCGVCEPECPVDAIK 56
           C  +CP        + L            I    C +CG+C+  CPVDAI+
Sbjct: 222 CRVICPYGALLGIVSALSSRLKLRSATAHIDKKLCTNCGLCQKSCPVDAIE 272


>gi|256544875|ref|ZP_05472246.1| RnfB/polyferredoxin [Anaerococcus vaginalis ATCC 51170]
 gi|256399374|gb|EEU12980.1| RnfB/polyferredoxin [Anaerococcus vaginalis ATCC 51170]
          Length = 266

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV+ C  D  +  +    +  ++C+ CG C   CP + I+
Sbjct: 143 CLGCG--SCVKACEFDAIHMVDGVSVVDKEKCVACGACVKTCPKNIIE 188


>gi|253688642|ref|YP_003017832.1| nitrate reductase, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755220|gb|ACT13296.1| nitrate reductase, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 521

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|242398139|ref|YP_002993563.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sibiricus MM 739]
 gi|242264532|gb|ACS89214.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sibiricus MM 739]
          Length = 646

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           YV  + C  C    C+    CP   + E +    + P  C  CG C   CP  A +P  E
Sbjct: 586 YVNEDKCTGC--RICINAYGCPAIYWDEEKKQARVEPTMCWGCGGCAQVCPFGAFEPMKE 643

Query: 61  PGL 63
              
Sbjct: 644 GEQ 646



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 33  LAIHPDECIDCGVCEPE--CPVDAIKPDTEPGL 63
             ++ D+C  C +C     CP  AI  D E   
Sbjct: 585 YYVNEDKCTGCRICINAYGCP--AIYWDEEKKQ 615


>gi|227111903|ref|ZP_03825559.1| respiratory nitrate reductase 1 beta chain [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 521

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|120603320|ref|YP_967720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120563549|gb|ABM29293.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 170

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C + CP   + + +     +    CI CG C   CPVDA+  D E GL
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 109



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C E CPVD  + +GE  L   P  CI CG C   CP + I+   +P
Sbjct: 86  CIRCG--RCAEACPVDAVHMDGETGL---PYVCIHCGRCVAFCPHECIELVDQP 134


>gi|86156647|ref|YP_463432.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773158|gb|ABC79995.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1200

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 35/115 (30%), Gaps = 37/115 (32%)

Query: 9   CILCKHTDCVEVCPVDCFYE---GEN--------FLAIH----------------PDECI 41
           CI C    C  +CP         G          FLA+                 PD+C 
Sbjct: 697 CIQCN--KCALICPHAAIRPKFYGPEVLGGAPQGFLAMDYKSADVKGAKYSLQVAPDDCT 754

Query: 42  DCGVCEPECPVD--------AIKPDTEPGLELWLKINSEYATQWPNITTKKESLP 88
            C +C   CP +        AI       L+   + N E+    P+   KK  L 
Sbjct: 755 GCTLCVEICPAESKTEKGKKAINMADAMPLKEKERANFEFFLSIPDADRKKVKLD 809



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 37  PDECIDCGVCEPECPVDAIKP 57
           P  CI C  C   CP  AI+P
Sbjct: 694 PSLCIQCNKCALICPHAAIRP 714


>gi|332526755|ref|ZP_08402857.1| NADH dehydrogenase subunit I [Rubrivivax benzoatilyticus JA2]
 gi|332111158|gb|EGJ11190.1| NADH dehydrogenase subunit I [Rubrivivax benzoatilyticus JA2]
          Length = 165

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 64  ERCIACKL--CEAVCPAMAITIESDVRADGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 120



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 64 ERCIACKLCEAVCPAMAITIESD 86


>gi|325970887|ref|YP_004247078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324026125|gb|ADY12884.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 354

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 8   NCILCKHTDCVEVCPVD-CFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           +CI C    C   CP+     E     LA+H   C+ CG C   CP   ++ +T
Sbjct: 288 SCIGCG--ACDRACPLSIPIQEKASKALAVHSSRCVGCGHCVDACPKHTLRYET 339



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 5/38 (13%)

Query: 19  EVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECP 51
            +CP+          G   +      CI CG C+  CP
Sbjct: 263 HLCPLGAVLSLLSKLGRMHIRTDVTSCIGCGACDRACP 300


>gi|317485953|ref|ZP_07944809.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922803|gb|EFV44033.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 255

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    CV VCPV   D   +G     I+P  CI C  C   CP  A
Sbjct: 74  PCMQCGKPSCVSVCPVVATDKNEDGGIVSQIYP-RCIGCRYCMASCPYHA 122


>gi|315923839|ref|ZP_07920068.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622872|gb|EFV02824.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 206

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           + + + CI C    C  +CP      G    AI    C+ CG+C   CPVDAI
Sbjct: 151 FKIVDGCIGCD--TCAGLCPQQAIDAGTP-YAIRQANCLHCGLCFENCPVDAI 200


>gi|319795633|ref|YP_004157273.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Variovorax
          paradoxus EPS]
 gi|315598096|gb|ADU39162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Variovorax
          paradoxus EPS]
          Length = 94

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAI 55
          +T+ CI C    C   CP D  Y G  +  I P +C +C        C   CPV  I
Sbjct: 2  ITDECINCDV--CEPECPNDAIYMGAEYYEIDPHKCTECVGHFDEPQCVQICPVACI 56



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/23 (69%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP DAI    E
Sbjct: 4  DECINCDVCEPECPNDAIYMGAE 26


>gi|296271571|ref|YP_003654202.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Arcobacter nitrofigilis DSM 7299]
 gi|296095746|gb|ADG91696.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
          nitrofigilis DSM 7299]
          Length = 127

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGE------NFLAIHPDECIDCG------VCEP 48
          M   +TE CI C+   C   CPV    E        +   + P+ C++C        C  
Sbjct: 1  MAVKITEECISCE--ACAPECPVAAILEDGHDKNPTDVFYVKPESCVECVDHADKPRCAE 58

Query: 49 ECPVD-AIKPDTE 60
           CP + AI  D  
Sbjct: 59 ACPTEGAIVWDMP 71


>gi|257063244|ref|YP_003142916.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790897|gb|ACV21567.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 205

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C++  C  VCPV    + E+ + I   + CI C  C   CP +      EP  
Sbjct: 64  ACQHCENPACEAVCPVGATQKLEDGVVIVDGELCIGCQSCIQACPYNVRTYLAEPPA 120


>gi|255656212|ref|ZP_05401621.1| anaerobic sulfite reductase subunit C [Clostridium difficile
           QCD-23m63]
 gi|296450352|ref|ZP_06892110.1| sulfite reductase [Clostridium difficile NAP08]
 gi|296878764|ref|ZP_06902766.1| sulfite reductase [Clostridium difficile NAP07]
 gi|296260802|gb|EFH07639.1| sulfite reductase [Clostridium difficile NAP08]
 gi|296430232|gb|EFH16077.1| sulfite reductase [Clostridium difficile NAP07]
          Length = 323

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V       N +    D+CI CG C   CP +A
Sbjct: 172 DRCVNCG--ACVKKCSKISVGALKTENNKVVRDGDKCIGCGECVLNCPTNA 220


>gi|225182143|ref|ZP_03735567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
 gi|225167157|gb|EEG75984.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Dethiobacter alkaliphilus AHT 1]
          Length = 71

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
          T+ C  C    C EVCP   F        I + + C++CG C   CP +AI
Sbjct: 16 TDKCSGC--RLCTEVCPHQVFAMENKKSRIANKEACMECGACARNCPTEAI 64


>gi|212704793|ref|ZP_03312921.1| hypothetical protein DESPIG_02857 [Desulfovibrio piger ATCC 29098]
 gi|212671755|gb|EEB32238.1| hypothetical protein DESPIG_02857 [Desulfovibrio piger ATCC 29098]
          Length = 370

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            E C  CK   C   C       GE+  A I  D C  CG C   C  DAI
Sbjct: 194 AEKCRGCK--TCTHYCAQSAISIGEDHKARIDHDLCAGCGRCIGVCNFDAI 242


>gi|170289697|ref|YP_001736513.1| putative ATPase RIL [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173777|gb|ACB06830.1| ABC transporter related [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 591

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 7  ENCI--LCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C    C   +C++ CP       D     ++ L I    C  CG+C  +CP  AI
Sbjct: 12 DRCNPKKCG-LECIKYCPEVRMGVEDTIKLVDSTLIIDEKLCTGCGICVKKCPFGAI 67


>gi|333031169|ref|ZP_08459230.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741766|gb|EGJ72248.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 321

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CI C    C + CP +     +    I P +C  C  C   CP  +I
Sbjct: 221 SCIGCG--ICAKTCPFEAITVKDRLAYIDPHKCKSCRKCVEVCPQGSI 266



 Score = 37.8 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV VC  D  +         +   +C  C  C   CP + I+
Sbjct: 143 CLGCGD--CVTVCQFDAIHINPETGIPEVDEAKCTACNSCVEACPKNIIE 190


>gi|325833409|ref|ZP_08165858.1| putative ferredoxin-type protein NapF [Eggerthella sp. HGA1]
 gi|325485333|gb|EGC87802.1| putative ferredoxin-type protein NapF [Eggerthella sp. HGA1]
          Length = 211

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 1   MTYVVTENCILCKHTDCVE---VCPVDCFY-EGENFLAIHPDECIDCGVCEPECPV 52
           M  V  + C+   +  CVE    CP +    +G+    +  D C  CGVCE  CP 
Sbjct: 119 MAVVQKDRCVA-YYQGCVECQKACPFEAIALDGDGHPVVDADRCNGCGVCEDVCPA 173



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFY----EGENF--LAIHPDECI----DCGVCEPECPVDAIKP 57
           +C  C    C  VCP         E +      +  D C+     C  C+  CP +AI  
Sbjct: 91  SCDFCGD--CQRVCPTGAIGAFDPEADKMGMAVVQKDRCVAYYQGCVECQKACPFEAIAL 148

Query: 58  D 58
           D
Sbjct: 149 D 149


>gi|300718079|ref|YP_003742882.1| Nitrate reductase 1 beta chain [Erwinia billingiae Eb661]
 gi|299063915|emb|CAX61035.1| Nitrate reductase 1 beta chain [Erwinia billingiae Eb661]
          Length = 514

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|295109922|emb|CBL23875.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           obeum A2-162]
          Length = 263

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP       +    I  D+C +CG C+  CP   I
Sbjct: 218 CIGCK--KCEKTCPNGAITVTDFCAHIDYDKCTNCGACKEACPRHVI 262



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
               CV+ CP D  +       ++ + C  CG C  +CP   I+
Sbjct: 146 GFGSCVKACPFDAIHIVNGVAVVNREACKACGKCIAKCPHHLIE 189


>gi|251778561|ref|ZP_04821481.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082876|gb|EES48766.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 320

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV  C    VD        +  + ++CI CG C   CP  A
Sbjct: 170 DRCVSCG--ACVRACKKKSVDSLKAVNYKVVRNEEKCIGCGECVINCPTGA 218



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 8/38 (21%)

Query: 21  CPVDCFYEGENFLAI--------HPDECIDCGVCEPEC 50
           CP DC     +   I          D C+ CG C   C
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYDKDRCVSCGACVRAC 182


>gi|237737383|ref|ZP_04567864.1| nitroreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229421245|gb|EEO36292.1| nitroreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 261

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 7  ENCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + CI CK   C+  C P +   + +      P  C+ CG C   CP  AI  +     E 
Sbjct: 7  DKCIKCK--SCIRDCFPENIILQNDEISIKGP--CMMCGHCVAICPTKAISFEGYEDSEE 62

Query: 66 WLKIN 70
             +N
Sbjct: 63 LKNLN 67


>gi|300775181|ref|ZP_07085043.1| NADH-quinone oxidoreductase subunit I [Chryseobacterium gleum ATCC
           35910]
 gi|300505921|gb|EFK37057.1| NADH-quinone oxidoreductase subunit I [Chryseobacterium gleum ATCC
           35910]
          Length = 185

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-------ENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +            E  L           I+   CI CG+CE  
Sbjct: 76  ERCTACGL--CAVACPAEAITMTAAERTKEEKHLYREEKYASVYEINMLRCIFCGMCEEA 133

Query: 50  CPVDAIK 56
           CP  AI 
Sbjct: 134 CPKSAIY 140


>gi|224437351|ref|ZP_03658323.1| NADH dehydrogenase subunit I [Helicobacter cinaedi CCUG 18818]
 gi|313143814|ref|ZP_07806007.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG
           18818]
 gi|313128845|gb|EFR46462.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG
           18818]
          Length = 234

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI C    C ++C  +C       GE+        +I+   CI CG+C   CP  AI
Sbjct: 81  ERCIGCGL--CEKICTSNCIRIITDRGEDGRKKILDYSINFGRCIYCGLCAEVCPELAI 137



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 25  CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             ++ +  L    + CI CG+CE  C  + I+  T+ G +   KI
Sbjct: 68  AIHKLQRLLESENERCIGCGLCEKICTSNCIRIITDRGEDGRKKI 112


>gi|197286928|ref|YP_002152800.1| formate dehydrogenase-O subunit beta [Proteus mirabilis HI4320]
 gi|227354833|ref|ZP_03839250.1| formate dehydrogenase-O beta subunit [Proteus mirabilis ATCC 29906]
 gi|194684415|emb|CAR46111.1| formate dehydrogenase-O beta subunit [Proteus mirabilis HI4320]
 gi|227165151|gb|EEI49982.1| formate dehydrogenase-O beta subunit [Proteus mirabilis ATCC 29906]
          Length = 312

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     + CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINEEDN 155



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 17/69 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP +     E +N       +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFNVPRINEEDNRAY----KCTLCVDRVEVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGL 63
           I   ++  +
Sbjct: 184 IHFGSKESM 192


>gi|182679344|ref|YP_001833490.1| NADH dehydrogenase subunit I [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|259514766|sp|B2IHV8|NUOI_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|182635227|gb|ACB96001.1| NADH-quinone oxidoreductase, chain I [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 162

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 23/79 (29%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAKAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117

Query: 56  KPDTEPGLELWLKINSEYA 74
                         N+E+A
Sbjct: 118 VEGP----------NAEFA 126


>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
 gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
          Length = 596

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 1   MTYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           M++V+ +   C  C  + C  +CP             I    CI CG C  +C   AI
Sbjct: 539 MSFVI-DPKVCKGC--SLCARMCPPGAISGIPKQPYAIDQARCIKCGTCLEKCKFGAI 593


>gi|148976171|ref|ZP_01812914.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3]
 gi|145964566|gb|EDK29820.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3]
          Length = 555

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 175 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCATSCPTEAI 234

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 235 SYALPNPDDTQKFIE 249



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 421 DCTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACP 464



 Score = 34.0 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             F  +  D C         C  C   CP  A+  +        ++IN
Sbjct: 168 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHKIEIN 215


>gi|30061074|gb|AAP19911.1| nitrite reductase [Haemophilus influenzae]
 gi|30061078|gb|AAP19913.1| nitrite reductase [Haemophilus influenzae]
 gi|30061084|gb|AAP19916.1| nitrite reductase [Haemophilus influenzae]
 gi|30061090|gb|AAP19919.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C +  CV VCP    F + E  +  +H D CI C  C   CP 
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCIGCQYCIAVCPY 85


>gi|62263617|gb|AAX78177.1| unknown protein [synthetic construct]
          Length = 244

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 109 CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 164



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I    CI C  C   CPVDAI
Sbjct: 104 IDESMCIGCEKCLLACPVDAI 124


>gi|148257859|ref|YP_001242444.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1]
 gi|146410032|gb|ABQ38538.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1]
          Length = 393

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI C    C E CP D      N   +   +C  C  C   CP  +I
Sbjct: 13 EICIRCN--TCEETCPEDAITHDNNNYVVDATKCNFCMDCIQPCPTGSI 59



 Score = 42.4 bits (99), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPD 58
          I P+ CI C  CE  CP DAI  D
Sbjct: 10 IDPEICIRCNTCEETCPEDAITHD 33


>gi|327399635|ref|YP_004340504.1| glutamate synthase [Hippea maritima DSM 10411]
 gi|327182264|gb|AEA34445.1| Glutamate synthase (NADPH) [Hippea maritima DSM 10411]
          Length = 504

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 2  TYVVTEN---CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          ++VV  +   CI CK   CVE C  D   + E E+ +      C+ C  C   CP +AI
Sbjct: 14 SFVVERDDYRCIRCK--ACVEQCSFDATFYDEEEDKVWNWNANCVGCNRCVAICPTEAI 70



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 40 CIDCGVCEPECPVDAIKPDTEPG 62
          CI C  C  +C  DA   D E  
Sbjct: 24 CIRCKACVEQCSFDATFYDEEED 46


>gi|323703106|ref|ZP_08114760.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531883|gb|EGB21768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 169

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C +  C+  CP       E +  + I  D C  C  C   CP  A + D   G
Sbjct: 58  SCFHCDNPWCIAACPNGAIQKREEDGVIFIDQDRCAGCKSCIMACPWSAPQWDARKG 114


>gi|301058593|ref|ZP_07199598.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium
           NaphS2]
 gi|300447325|gb|EFK11085.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium
           NaphS2]
          Length = 171

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 12/71 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFY------EGENFLA----IHPDECIDCGVCEPECPVDAI 55
            E C+ C    C  VCP DC        E     A    I+   CI CG CE  CP  AI
Sbjct: 48  AERCVACYL--CSAVCPTDCIAVQGAVAEDGRHYAASFRINFARCIYCGFCEEACPTLAI 105

Query: 56  KPDTEPGLELW 66
           +   +  +  +
Sbjct: 106 QLSPDFEMGEY 116


>gi|260595933|ref|YP_003208504.1| formate dehydrogenase-O iron-sulfur subunit [Cronobacter turicensis
           z3032]
 gi|260215110|emb|CBA26872.1| Formate dehydrogenase-O iron-sulfur subunit [Cronobacter turicensis
           z3032]
          Length = 300

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVTVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   ++  ++ 
Sbjct: 184 IHFGSKEDMKQ 194


>gi|255524652|ref|ZP_05391605.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255511676|gb|EET87963.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 376

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 7   ENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           E C  CK   C+  C  +   F + E  ++I+ D C+ CG C   C  DAI         
Sbjct: 195 EQCRGCK--RCLRECANNGLVFDDVEKKMSINADNCVGCGRCLGACNFDAITF---SNWA 249

Query: 65  LWLKINSEYAT 75
              ++N   A 
Sbjct: 250 ASKELNCRMAE 260


>gi|239787665|emb|CAX84132.1| Pyridine nucleotide-disulphide oxidoreductase family protein
           [uncultured bacterium]
          Length = 544

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 9   CILCKHT----DCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C +     +C   CP +        +G  F     D C  CG+C  ECP  AI
Sbjct: 485 CMSCGNCFECDNCYGACPDNAIIKVGPGQGFEFKY---DYCKGCGLCVTECPCGAI 537


>gi|261342961|ref|ZP_05970819.1| hypothetical protein ENTCAN_09562 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314711|gb|EFC53649.1| formate dehydrogenase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 300

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155



 Score = 37.8 bits (87), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVNVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEDMK 193


>gi|218780816|ref|YP_002432134.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762200|gb|ACL04666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 530

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 4   VVTENCI-LCKHTDCV---EVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV-- 52
            + +NC+   K T+CV   E CP           G     +  D C+ CG CE  CP   
Sbjct: 437 FIKQNCVVATKGTECVACAEHCPTGAVKIVREQGGPGLPKVDEDVCVGCGACEFACPAKP 496

Query: 53  -DAIK 56
             AI 
Sbjct: 497 HKAIY 501



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP--------- 57
           E CI C    C + C   C  + EN        C+ C  C   CPVDA++          
Sbjct: 233 EKCIQCG--ACSKRCKASCM-DVENKTV-DASRCVMCLDCLTVCPVDAVEFTNPSAAKKV 288

Query: 58  DTEPGLELWLKINSEYATQWPNI----TTKKESLPSAA 91
           +T+P     L + +   T  P+     T      PSA 
Sbjct: 289 ETDPARRSLLFMGAFLLTGLPSRSAAETGYGYPEPSAE 326



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 5/43 (11%)

Query: 17  CVEVCPVDCFYE-GENFLA----IHPDECIDCGVCEPECPVDA 54
           C  +CPV  F      F      +  ++CI CG C   C    
Sbjct: 207 CNTLCPVGAFLGLASRFSVFKISMDEEKCIQCGACSKRCKASC 249



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 39  ECIDCGVCEPECPVDAIKPDT 59
            C  C +C   CP   I+P+ 
Sbjct: 363 ACTGCHLCVAACPSHVIRPEL 383


>gi|242006426|ref|XP_002424051.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus
          corporis]
 gi|212507357|gb|EEB11313.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus
          corporis]
          Length = 608

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    CK  +C + CPV      C      +    I  + CI CG+C  +CP +A
Sbjct: 19 VNSDKCKPKRCK-QECKKSCPVVRMGKLCIEVVPNDKIATISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|169831731|ref|YP_001717713.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638575|gb|ACA60081.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 262

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  C    C EVC V  +        I  +P+ C+ C  C+  CP   I+   +   
Sbjct: 77  CNHCLEPLCAEVCFVHAYVVRPEGPVIYFNPEICVGCRYCQLACPFLNIQMKWDETW 133


>gi|147676577|ref|YP_001210792.1| dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Pelotomaculum thermopropionicum SI]
 gi|146272674|dbj|BAF58423.1| dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Pelotomaculum thermopropionicum SI]
          Length = 283

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C+ C    C +VCP       E    IH   C+  G C   CP DA   +   G  L+
Sbjct: 163 EKCVGCGL--CQKVCPRQAISMAEGKPYIHRSRCLLEGNCISSCPADA-WQEKRKGYLLY 219

Query: 67  L 67
           +
Sbjct: 220 I 220



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYEGENFL--------AIHPDECIDCGVCEPECPVDAI 55
           V  CP  C    EN +         +  ++C+ CG+C+  CP  AI
Sbjct: 135 VSGCPNCCARPRENDIGLVGAVEPVLCEEKCVGCGLCQKVCPRQAI 180


>gi|118475634|ref|YP_891436.1| ferredoxin, 4Fe-4S [Campylobacter fetus subsp. fetus 82-40]
 gi|261884700|ref|ZP_06008739.1| ferredoxin, 4Fe-4S [Campylobacter fetus subsp. venerealis str.
          Azul-94]
 gi|118414860|gb|ABK83280.1| ferredoxin, 4Fe-4S [Campylobacter fetus subsp. fetus 82-40]
          Length = 93

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV    +      GE+   ++ D+C++C        C  
Sbjct: 1  MAVRITDTCISCG--SCIDECPVSAIVDDSDNPTGEDAYYVYADKCVECVGHNDSPACAE 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          D CI CG C  ECPV AI  D++
Sbjct: 7  DTCISCGSCIDECPVSAIVDDSD 29


>gi|16755057|gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum]
          Length = 604

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-----------AIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C       L            I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVSPVAKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|145219557|ref|YP_001130266.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Prosthecochloris vibrioformis DSM 265]
 gi|145205721|gb|ABP36764.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
          phaeovibrioides DSM 265]
          Length = 62

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV     G++   I    C +C        C   CP + 
Sbjct: 1  MALYITEECTYCG--ACEPECPVTAISAGDDIYVIDAATCTECAGYADAPACVAVCPAEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|323692163|ref|ZP_08106406.1| electron transport complex [Clostridium symbiosum WAL-14673]
 gi|323503737|gb|EGB19556.1| electron transport complex [Clostridium symbiosum WAL-14673]
          Length = 263

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ C  D  +   N   I  ++C +CG C  +CPV  I
Sbjct: 218 CIGC--TLCIKQCEDDAIHMDNNLAVIDYEKCTNCGKCAAKCPVKVI 262



 Score = 41.3 bits (96), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
               CV  C  D  +  +    +  ++C+ CG C   CP
Sbjct: 146 GFGSCVTACQFDAIHVVDGIAVVDKEKCVACGKCVDACP 184


>gi|311232944|gb|ADP85798.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C + CP   + + +     +    CI CG C   CPVDA+  D E GL
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 109



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C E CPVD  + +GE  L   P  CI CG C   CP + I+   +P
Sbjct: 86  CIRCG--RCAEACPVDAVHMDGETGL---PYVCIHCGRCVAFCPHECIELVDQP 134


>gi|227831518|ref|YP_002833298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|227457966|gb|ACP36653.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
          Length = 627

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-----CIDCGVCEPECPVDAIKPDTEPGL 63
           C+ CK  DC   CPV           I+  E     C+  G C   CP D I       +
Sbjct: 563 CVNCKTVDCAFACPVG--ITDMRGWFINKGEFKSFKCVGIGECVNACPYDNIYF---YDI 617

Query: 64  ELWLK 68
             W+K
Sbjct: 618 RQWIK 622


>gi|189346681|ref|YP_001943210.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          limicola DSM 245]
 gi|189340828|gb|ACD90231.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          limicola DSM 245]
          Length = 62

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV+    G++   I    C +C        C   CP + 
Sbjct: 1  MALYITEECTYCG--ACEPECPVNAISAGDDVYVIDAGSCTECAGYADSPACSAVCPSEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|115485837|ref|NP_001068062.1| Os11g0546000 [Oryza sativa Japonica Group]
 gi|77551423|gb|ABA94220.1| ATP-binding cassette sub-family E member 1, putative, expressed
          [Oryza sativa Japonica Group]
 gi|113645284|dbj|BAF28425.1| Os11g0546000 [Oryza sativa Japonica Group]
          Length = 604

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C                    I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|84385487|ref|ZP_00988518.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01]
 gi|84379467|gb|EAP96319.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01]
          Length = 553

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCATSCPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 TYALPNPDDTQKFIE 247



 Score = 43.2 bits (101), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 16/80 (20%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKINSEY-------AT 75
             F  +  D C         C  C   CP  A+  +        ++IN          AT
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCAT 225

Query: 76  QWPN--ITTKKESLPSAAKM 93
             P   IT    +     K 
Sbjct: 226 SCPTEAITYALPNPDDTQKF 245


>gi|157157477|ref|YP_001464032.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           E24377A]
 gi|218696314|ref|YP_002403981.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           55989]
 gi|256019501|ref|ZP_05433366.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
 gi|260856827|ref|YP_003230718.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O26:H11 str. 11368]
 gi|260869395|ref|YP_003235797.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O111:H- str. 11128]
 gi|293449036|ref|ZP_06663457.1| hycF [Escherichia coli B088]
 gi|300820495|ref|ZP_07100646.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300906777|ref|ZP_07124459.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300919244|ref|ZP_07135767.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300922238|ref|ZP_07138364.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|301305389|ref|ZP_07211483.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|301326245|ref|ZP_07219628.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|331669453|ref|ZP_08370299.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA271]
 gi|331678694|ref|ZP_08379368.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H591]
 gi|332280623|ref|ZP_08393036.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
 gi|157079507|gb|ABV19215.1| formate hydrogenlyase, subunit F [Escherichia coli E24377A]
 gi|218353046|emb|CAU98871.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           55989]
 gi|257755476|dbj|BAI26978.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O26:H11 str. 11368]
 gi|257765751|dbj|BAI37246.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O111:H- str. 11128]
 gi|291322126|gb|EFE61555.1| hycF [Escherichia coli B088]
 gi|300401471|gb|EFJ85009.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300413689|gb|EFJ96999.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300421368|gb|EFK04679.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|300526759|gb|EFK47828.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300839309|gb|EFK67069.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|300847090|gb|EFK74850.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|315254502|gb|EFU34470.1| hydrogenase 4 subunit H [Escherichia coli MS 85-1]
 gi|320202370|gb|EFW76940.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli EC4100B]
 gi|323154936|gb|EFZ41128.1| formate hydrogenlyase subunit 6 [Escherichia coli EPECa14]
 gi|323180141|gb|EFZ65693.1| formate hydrogenlyase subunit 6 [Escherichia coli 1180]
 gi|323183247|gb|EFZ68644.1| formate hydrogenlyase subunit 6 [Escherichia coli 1357]
 gi|323946399|gb|EGB42427.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324119970|gb|EGC13848.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|331063121|gb|EGI35034.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA271]
 gi|331073524|gb|EGI44845.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H591]
 gi|332102975|gb|EGJ06321.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|326793210|ref|YP_004311031.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium lentocellum DSM 5427]
 gi|326543974|gb|ADZ85833.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium lentocellum DSM 5427]
          Length = 105

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + CI C    C  VCP    YE +N + I    C  CG+C+ EC    I  + E G+E 
Sbjct: 46  DKCIHCNW--CYMVCPEGVIYENDNKIQIDYRFCKGCGICQKECKKQCIIMEEEGGVED 102


>gi|295105801|emb|CBL03344.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 247

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            C  C+   C + CP    Y+ + F  + +  D+C  C  C   CP  A +  ++  
Sbjct: 58  PCGHCEDPACAKACPNGALYKEDEFGAVLVDQDKCDGCRKCYDACPYGAPRFASDEP 114


>gi|218892493|ref|YP_002441360.1| putative ferredoxin [Pseudomonas aeruginosa LESB58]
 gi|218772719|emb|CAW28504.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 471

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|189465842|ref|ZP_03014627.1| hypothetical protein BACINT_02204 [Bacteroides intestinalis DSM
           17393]
 gi|189434106|gb|EDV03091.1| hypothetical protein BACINT_02204 [Bacteroides intestinalis DSM
           17393]
          Length = 505

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 4   VVTENCILCKHT----DCVEVCPVDC-----FYEGENFLAIHPDECIDCGVCEPECPV 52
            + ENCI+ +       C E CP        F +G     I  + C+ CG CE  CP 
Sbjct: 413 FIKENCIVYRDGTSCGACSEHCPTQALSMIPFKDGLTIPHIDTEICVGCGGCEYVCPA 470



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            E C  C    C   C   C    E    I    CIDC  C  EC  +A
Sbjct: 223 AEKCNHCGL--CATKCKASCINSPEQT--IDYSRCIDCFDCLGECRQNA 267



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 20/62 (32%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECI------DCGVCEPECPV 52
           +C +C       VCP                   +    + CI       CG C   CP 
Sbjct: 382 DCTVCGD-----VCPNGAILPLTKAQKHLTQMGKVVFIKENCIVYRDGTSCGACSEHCPT 436

Query: 53  DA 54
            A
Sbjct: 437 QA 438


>gi|218778558|ref|YP_002429876.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759942|gb|ACL02408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 150

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           C  C++  C  VCPV           L +  D+CI C +C   CP++
Sbjct: 55  CNQCENAYCANVCPVKAISRDPETRALVVDRDKCIGCNMCHKYCPIE 101


>gi|150017844|ref|YP_001310098.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904309|gb|ABR35142.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 218

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 5   VTENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V+ +CI CK   C + CP+    +    + L+ HPD CI CG C  ECP  AI
Sbjct: 162 VSSSCISCKL--CEKKCPLGLVPYNHKGDILS-HPD-CIQCGKCVIECPKKAI 210


>gi|150018615|ref|YP_001310869.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149905080|gb|ABR35913.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 461

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPEC 50
          E C  C    CVEVCPV+     +     I  D C+ CG C   C
Sbjct: 11 ELCTGC--QQCVEVCPVNAIQGKKGQPQNIDYDVCVSCGQCIQVC 53



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 35 IHPDECIDCGVCEPECPVDAIK 56
          I  + C  C  C   CPV+AI+
Sbjct: 8  IDKELCTGCQQCVEVCPVNAIQ 29


>gi|167038500|ref|YP_001666078.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038757|ref|YP_001661742.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter sp. X514]
 gi|256751369|ref|ZP_05492248.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913657|ref|ZP_07130974.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X561]
 gi|307723328|ref|YP_003903079.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter sp. X513]
 gi|320116895|ref|YP_004187054.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166852997|gb|ABY91406.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X514]
 gi|166857334|gb|ABY95742.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749751|gb|EEU62776.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890342|gb|EFK85487.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X561]
 gi|307580389|gb|ADN53788.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X513]
 gi|319929986|gb|ADV80671.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 271

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    CV+ CP +          I+ ++C +CG+C  +CP   I    E 
Sbjct: 215 CIGC--QICVKSCPENAITFENYLAKINYEKCTNCGICAEKCPTGTIFSSLEQ 265



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV+VC             I  ++C+ C  C   CP   I+
Sbjct: 141 CLGCG--TCVDVCDYGAIQIINGVAVIDKEKCVACKACIEVCPKGIIE 186


>gi|167037063|ref|YP_001664641.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115478|ref|YP_004185637.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855897|gb|ABY94305.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928569|gb|ADV79254.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 291

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C E+C  D          ++P  C  CG+C  +CPV+AIK
Sbjct: 66  DKCIECGL--CEELCRFDAISN----FEVNPYYCEGCGLCMYKCPVEAIK 109



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C  DAI
Sbjct: 57 GKETAVIDKDKCIECGLCEELCRFDAI 83


>gi|116749373|ref|YP_846060.1| NADH dehydrogenase subunit I [Syntrophobacter fumaroxidans MPOB]
 gi|156632695|sp|A0LJM3|NUOI2_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|116698437|gb|ABK17625.1| NADH-quinone oxidoreductase, chain I [Syntrophobacter fumaroxidans
           MPOB]
          Length = 178

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C  VCPV C      E E+         I+   CI CG+CE  CP  AI
Sbjct: 55  GERCVAC--YLCSAVCPVSCISMQAAEREDGRRHAAWFRINFARCIYCGLCEEACPTSAI 112

Query: 56  K 56
           +
Sbjct: 113 Q 113


>gi|327400332|ref|YP_004341171.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315840|gb|AEA46456.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Archaeoglobus veneficus SNP6]
          Length = 410

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 23/78 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE---GENF---------------LAIHPDECI---DC 43
           VT+ C  C   +CV+ CP +   E   G +                  I  + C     C
Sbjct: 105 VTDACTACG--ECVKACPAERPNEFNYGMDKTKAIYLPHEMSFPMKYVIDAEYCQKNEGC 162

Query: 44  GVCEPECPVDAIKPDTEP 61
             C   CP DAI    EP
Sbjct: 163 KACVDACPYDAIDLAMEP 180


>gi|323968437|gb|EGB63843.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327252787|gb|EGE64441.1| hypothetical protein ECSTEC7V_2032 [Escherichia coli STEC_7v]
          Length = 184

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
          ++C  C+   C++VCP    +     +  +   +CI C  C   CP  
Sbjct: 52 QSCQHCEDAPCIDVCPTGASWRDMQGIVRVEKSQCIGCSYCIGACPYQ 99


>gi|302335790|ref|YP_003800997.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
 gi|301319630|gb|ADK68117.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
          Length = 355

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 1   MTY-VVTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           MTY ++   C  C    C+  C  D     + F+  I    CI CG C   C   A+
Sbjct: 281 MTYHILVSRCTGCGD--CLAACEEDAITGKDKFVHVIDQKACIQCGRCLEACGEGAV 335


>gi|156935969|ref|YP_001439885.1| hypothetical protein ESA_03863 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534223|gb|ABU79049.1| hypothetical protein ESA_03863 [Cronobacter sakazakii ATCC BAA-894]
          Length = 300

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVTVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 184 IHFGTKEDMKQ 194


>gi|146303092|ref|YP_001190408.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
          [Metallosphaera sedula DSM 5348]
 gi|145701342|gb|ABP94484.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Metallosphaera sedula DSM 5348]
          Length = 85

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          VV + CI C    C   CP            ++ + C  CGVC   CPV AI   TE
Sbjct: 30 VVGDRCIGCN--ACYLWCPEGTIGVKGKRAEVNYEYCKGCGVCANVCPVKAISMVTE 84


>gi|117620413|ref|YP_857010.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561820|gb|ABK38768.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 199

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C+   C   CP +     +  + +    CI C  C   CP  A
Sbjct: 75  CRQCEDKPCAMACPNNAIVSEDGCVKVLQARCIGCKSCVVACPYGA 120


>gi|82778087|ref|YP_404436.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella
           dysenteriae Sd197]
 gi|309786197|ref|ZP_07680825.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617]
 gi|81242235|gb|ABB62945.1| probable iron-sulfur protein of hydrogenase 3 [Shigella dysenteriae
           Sd197]
 gi|308925942|gb|EFP71421.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELVWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|21673682|ref|NP_661747.1| sulfite reductase, dissimilatory-type, beta subunit [Chlorobium
           tepidum TLS]
 gi|21646802|gb|AAM72089.1| sulfite reductase, dissimilatory-type, beta subunit [Chlorobium
           tepidum TLS]
          Length = 359

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVNGKKTLMVDEAKCICCGACFGACPAMEINHPEHSKFAVWV 264


>gi|332296339|ref|YP_004438262.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
 gi|332179442|gb|AEE15131.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
          Length = 449

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKP 57
          C+ C    C E CP +    GE  +  +I   +CI CG C   CP  AI+ 
Sbjct: 44 CVGCD--TCREQCPANAI-RGELGVAHSIDIMKCITCGQCLINCPFGAIEQ 91



 Score = 37.8 bits (87), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 22 PVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          P   +  GE    + I+ ++C+ C  C  +CP +AI+ + 
Sbjct: 24 PEGTYRPGELKGIIKINQNKCVGCDTCREQCPANAIRGEL 63


>gi|325849937|ref|ZP_08170976.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479961|gb|EGC83044.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 265

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV+ C  D  +       +  ++C+ CG C   CP + I+
Sbjct: 142 CVGCG--SCVKACEFDAIHMVNGVSVVDKEKCVACGACVKICPKNIIE 187


>gi|290769854|gb|ADD61626.1| putative protein [uncultured organism]
          Length = 295

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V T+ C+ C    C   C +D    +  N       ECI CG+C   CP  AI  
Sbjct: 234 VDTDKCVSCG--ACARACKMDVDITKTPNHA-----ECIRCGMCIKSCPTKAIHY 281


>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 624

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           Y+    C  C  + C   CPV     + +    I   +CI CG C   C   A+K D
Sbjct: 570 YIDEVLCKGC--SKCARSCPVGAISGQIKKPFKIDEKKCIKCGACIGACAFKAVKED 624



 Score = 36.7 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAI 55
             + I    C  C  C   CPV AI
Sbjct: 567 RQIYIDEVLCKGCSKCARSCPVGAI 591


>gi|289192494|ref|YP_003458435.1| NIL domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938944|gb|ADC69699.1| NIL domain protein [Methanocaldococcus sp. FS406-22]
          Length = 131

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C+  CP++  Y  E + +    ++C+ C  C   CP  AI+
Sbjct: 80  DKCVHCG--CCITQCPINVIYMDEEYNVVFKEEDCVGCKNCLKACPFKAIE 128


>gi|254881564|ref|ZP_05254274.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294778845|ref|ZP_06744262.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|254834357|gb|EET14666.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294447298|gb|EFG15881.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
          Length = 301

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TE CI CK   C +VCPV      +  +      C  C  C   CPV A++ 
Sbjct: 236 TEACIGCK--KCEKVCPVGNITVTDRPVW--GGNCTQCLACYHVCPVHAVEY 283



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C  CE  CPV  I     P  
Sbjct: 237 EACIGCKKCEKVCPVGNITVTDRPVW 262


>gi|209519316|ref|ZP_03268116.1| formate dehydrogenase, beta subunit [Burkholderia sp. H160]
 gi|209500265|gb|EEA00321.1| formate dehydrogenase, beta subunit [Burkholderia sp. H160]
          Length = 307

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSPGAIVQYTNGIVDFHEENCIGCGFCIAGCPFN 146


>gi|188587996|ref|YP_001922032.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498277|gb|ACD51413.1| anaerobic sulfite reductase subunit C [Clostridium botulinum E3
           str. Alaska E43]
          Length = 285

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V + C+ C    CV+ C        +  +  + D C+DCG C   C + A
Sbjct: 162 FVLDKCVGCGL--CVKACRQKALEVVDKKIVHNKDLCVDCGGCVRACKLGA 210


>gi|188586666|ref|YP_001918211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351353|gb|ACB85623.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 149

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C +  C +VCPV           +  DECI CG C+  CP D I
Sbjct: 54  CNQCDNAFCEKVCPVSAIKRENGIPVVVQDECIGCGQCQKYCPRDVI 100


>gi|118594546|ref|ZP_01551893.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylophilales
          bacterium HTCC2181]
 gi|118440324|gb|EAV46951.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methylophilales
          bacterium HTCC2181]
          Length = 82

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +T+ CI C    C   CP D  Y+G     I+P  C +C        C   CPV  
Sbjct: 1  MSLFITDECINCDV--CEPECPNDAIYQGIEIYEINPKLCTECVGHFDQPQCVEVCPVAC 58

Query: 55 IKPDTE 60
          I  D +
Sbjct: 59 IPKDPD 64


>gi|157371122|ref|YP_001479111.1| nitrate reductase subunit beta [Serratia proteamaculans 568]
 gi|157322886|gb|ABV41983.1| nitrate reductase, beta subunit [Serratia proteamaculans 568]
          Length = 514

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|78356256|ref|YP_387705.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218661|gb|ABB38010.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 660

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V T  C+ C    C   CP     E ++        +    C  CG+C   CP  AI+  
Sbjct: 579 VDTARCVGC--MKCAMTCPFGAVRETQDRAGNVKADVLETVCQGCGICTATCPHGAIQLQ 636

Query: 59  TEPGLELWLKINS 71
                ++  ++N+
Sbjct: 637 HFTDNQILAEVNA 649



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 26/84 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDEC-- 40
           TYV    C  C    C+E CP     D F EG                   +I PD C  
Sbjct: 235 TYVDWSKCTGCGL--CMEKCPSKKSFDRFNEGVATTTAINIPFPQAIPKKASIDPDYCRK 292

Query: 41  ---IDCGVCEPECPVDAIKPDTEP 61
                CGVCE  CP+  I  + + 
Sbjct: 293 LQGKKCGVCEKFCPMGCIDFEQQE 316


>gi|51244101|ref|YP_063985.1| iron-sulfur proteins [Desulfotalea psychrophila LSv54]
 gi|50875138|emb|CAG34978.1| related to iron-sulfur proteins [Desulfotalea psychrophila LSv54]
          Length = 261

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V +  C  C+   C  VCP       E  +     +CI C  C   CP  AI        
Sbjct: 184 VDSTLCNFCE--TCTSVCPAGIISAVEGKILFEAGDCIRCCACIKSCPTSAISFAVPALA 241

Query: 64  ELWLKI 69
           EL LK+
Sbjct: 242 ELALKL 247


>gi|193069699|ref|ZP_03050651.1| formate hydrogenlyase, subunit F [Escherichia coli E110019]
 gi|192957062|gb|EDV87513.1| formate hydrogenlyase, subunit F [Escherichia coli E110019]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|15596748|ref|NP_250242.1| ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|107100981|ref|ZP_01364899.1| hypothetical protein PaerPA_01002011 [Pseudomonas aeruginosa PACS2]
 gi|116049495|ref|YP_791702.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254234652|ref|ZP_04927975.1| hypothetical protein PACG_00519 [Pseudomonas aeruginosa C3719]
 gi|254239899|ref|ZP_04933221.1| hypothetical protein PA2G_00528 [Pseudomonas aeruginosa 2192]
 gi|296390079|ref|ZP_06879554.1| putative ferredoxin [Pseudomonas aeruginosa PAb1]
 gi|313106556|ref|ZP_07792784.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
 gi|9947511|gb|AAG04940.1|AE004583_5 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|115584716|gb|ABJ10731.1| putative ferredoxin [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166583|gb|EAZ52094.1| hypothetical protein PACG_00519 [Pseudomonas aeruginosa C3719]
 gi|126193277|gb|EAZ57340.1| hypothetical protein PA2G_00528 [Pseudomonas aeruginosa 2192]
 gi|310879286|gb|EFQ37880.1| putative ferredoxin [Pseudomonas aeruginosa 39016]
          Length = 471

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|327312049|ref|YP_004338946.1| NADH-quinone oxidoreductase subunit I [Thermoproteus uzoniensis
           768-20]
 gi|326948528|gb|AEA13634.1| NADH-quinone oxidoreductase, subunit I [Thermoproteus uzoniensis
           768-20]
          Length = 178

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 6   TENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           TE C  C    C  +CP +         G  +  I    CI C  C   CP  A+ P   
Sbjct: 53  TERCTSC--MICARICPTNAIKMYMEKNGRRYPGIDYGRCIMCHYCIDACPTYALYPTDI 110

Query: 61  PGLELW 66
                +
Sbjct: 111 RDFAFY 116


>gi|303258421|ref|ZP_07344424.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|330999914|ref|ZP_08323613.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302858867|gb|EFL81955.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|329573432|gb|EGG55041.1| Tat pathway signal sequence domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 236

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 5   VTENCILCKHT-DCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V + C  C H   C   CP              +  + CI CG+C+  CP + +  D E
Sbjct: 119 VQDTCRQCDHPVPCANACPKGAIRVNPKTGARYVDEETCIGCGLCQKACPWNMMSFDVE 177


>gi|303240131|ref|ZP_07326652.1| Fe-S cluster domain protein [Acetivibrio cellulolyticus CD2]
 gi|302592400|gb|EFL62127.1| Fe-S cluster domain protein [Acetivibrio cellulolyticus CD2]
          Length = 267

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    C +VCP            I+P+ C +CG C   CP  AI
Sbjct: 216 CIGCG--KCSKVCPSSAIAVNGTLAKINPELCSNCGECMKACPTGAI 260



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
               +C  +CP       +    I    C  C  C   CP   I  +  P  + ++
Sbjct: 143 VGMGNCARICPFGAIEIIDGLARIIESRCKACEKCVAACPKKII--EMVPKFDEYI 196


>gi|217967124|ref|YP_002352630.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Dictyoglomus turgidum DSM 6724]
 gi|217336223|gb|ACK42016.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Dictyoglomus turgidum DSM 6724]
          Length = 137

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
           E C+ C +  CV  CP    Y  E  L +     +C  CGVC   CP +A++
Sbjct: 83  EKCVHCGY--CVSYCPTKALYRNEKTLMVGFDSQKCTACGVCIEICPYNAME 132


>gi|29345796|ref|NP_809299.1| putative F420H2-dehydrogenase [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|29337689|gb|AAO75493.1| putative F420H2-dehydrogenase [Bacteroides thetaiotaomicron
          VPI-5482]
          Length = 397

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 12 CKHTDCVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECPVD 53
          C  + CV  CP  C    ++       +  + + CIDC +C   CP++
Sbjct: 14 CGCSACVHKCPKQCLRMSQDKDGFFFPIVNNREACIDCSLCAKVCPME 61


>gi|331006088|ref|ZP_08329424.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [gamma proteobacterium IMCC1989]
 gi|330420125|gb|EGG94455.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in
           Cu oxidation [gamma proteobacterium IMCC1989]
          Length = 484

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCPVD              ECI+CG+C   C
Sbjct: 275 DCIDCSW--CVQVCPVDIDIRDGLQY-----ECINCGLCVDAC 310


>gi|303240033|ref|ZP_07326555.1| Rubrerythrin [Acetivibrio cellulolyticus CD2]
 gi|302592512|gb|EFL62238.1| Rubrerythrin [Acetivibrio cellulolyticus CD2]
          Length = 350

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 13 KHTDCVEVCPVDCFYEGENFLAIHPDECI-DCGVCEPECPVDAIK--PDTEPGLEL 65
          K   C+ VCP     + EN + I   +CI  C  C   CP  AI   PD  P  + 
Sbjct: 12 KDCMCLYVCPTGA-TDTENSI-IDVSKCIKGCRKCVDACPSGAISLLPDEYPPQQP 65


>gi|303242026|ref|ZP_07328518.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
 gi|302590444|gb|EFL60200.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
          Length = 290

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C    C + C  D      +   + P +C  CG C   CP  AI  +     EL+
Sbjct: 66  DLCIKCG--ICKDTCRFDSIN---DEFKMIPMKCEGCGACVLACPQKAIHLEEVKTGELY 120

Query: 67  L 67
           +
Sbjct: 121 I 121



 Score = 40.5 bits (94), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          G     I PD CI CG+C+  C  D+I  +
Sbjct: 57 GAKEAVIDPDLCIKCGICKDTCRFDSINDE 86


>gi|293395662|ref|ZP_06639945.1| respiratory nitrate reductase [Serratia odorifera DSM 4582]
 gi|291421981|gb|EFE95227.1| respiratory nitrate reductase [Serratia odorifera DSM 4582]
          Length = 513

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|239628717|ref|ZP_04671748.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518863|gb|EEQ58729.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 617

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +V + C+ C    C+    CP       ++ + I    C  CG+C   C VDAI+P
Sbjct: 564 IVEDRCVDC--RTCINEIGCP--ALVLDQDKVKIDSGLCTGCGLCGQICTVDAIEP 615


>gi|225016109|ref|ZP_03705342.1| hypothetical protein CLOSTMETH_00053 [Clostridium methylpentosum
           DSM 5476]
 gi|224951106|gb|EEG32315.1| hypothetical protein CLOSTMETH_00053 [Clostridium methylpentosum
           DSM 5476]
          Length = 579

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++  E C  CK   C+++ CP     EG   + I   +C+ CG CE  C   AIK   E
Sbjct: 524 HIDQEACKKCK--MCLKIGCPAISIREGN--ILIDETQCVGCGQCECMCKFGAIKSKEE 578


>gi|218701212|ref|YP_002408841.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           IAI39]
 gi|218371198|emb|CAR19029.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           IAI39]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|254469568|ref|ZP_05082973.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062]
 gi|211961403|gb|EEA96598.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062]
          Length = 153

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 51  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGFCQEACPVDAI 108


>gi|170290904|ref|YP_001737720.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Candidatus
          Korarchaeum cryptofilum OPF8]
 gi|170174984|gb|ACB08037.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Candidatus
          Korarchaeum cryptofilum OPF8]
          Length = 89

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
          CI C    C   CP +   EGEN    I    C  CGVC   CP  AI+
Sbjct: 37 CIKC--WLCWLYCPEEVISEGENGFPVIDLSYCKGCGVCADVCPAKAIE 83


>gi|297584190|ref|YP_003699970.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Bacillus
           selenitireducens MLS10]
 gi|297142647|gb|ADH99404.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Bacillus
           selenitireducens MLS10]
          Length = 337

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 14/74 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN-------FLA-IHPDECIDCGVCEPECPVDAIK 56
           E+CI C    C  VCP  CF   +GE+       FL  I    C  C  C   CP DA+ 
Sbjct: 254 ESCIHC--AACDTVCPDYCFVWEQGEDKKGRPQMFLKGIDYQYCKGCLKCVDACPTDALA 311

Query: 57  PDTEPGLELWLKIN 70
              E   + + + N
Sbjct: 312 DLVEE--KGYAEDN 323


>gi|153833468|ref|ZP_01986135.1| sulfite reductase, subunit C [Vibrio harveyi HY01]
 gi|269964103|ref|ZP_06178405.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3]
 gi|148870243|gb|EDL69178.1| sulfite reductase, subunit C [Vibrio harveyi HY01]
 gi|269831162|gb|EEZ85319.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3]
          Length = 333

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 9   CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C    CV+ C    VDC    +        +CI CG C   CP  A + D  P    
Sbjct: 180 CIGCG--ACVKACAHHAVDCLSLKDGKAVKEESKCIGCGECVLACPTLAWRRD--PKQFY 235

Query: 66  WLKINSEYATQWPNI 80
            +K+    + + P +
Sbjct: 236 MVKLGGRTSKKTPRV 250


>gi|13539221|emb|CAC35763.1| putative iron-sulfur protein (PscB) [Prosthecochloris vibrioformis]
          Length = 226

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  ++           EG     I  D CI C  C    EC
Sbjct: 131 FIIENLCVGCGL--CLDKCPPKINAIGYKFYGDVQEGGFRCYIDQDACISCSACFSGDEC 188

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 189 PSGALIEQLPDGE 201


>gi|71281936|ref|YP_270999.1| iron-sulfur cluster-binding protein [Colwellia psychrerythraea 34H]
 gi|71147676|gb|AAZ28149.1| iron-sulfur cluster-binding protein [Colwellia psychrerythraea 34H]
          Length = 487

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 16/66 (24%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CVEVCP                ECI+CG C   C         P   I+  
Sbjct: 285 DCIDCNL--CVEVCPTGIDIRNGLQY-----ECINCGSCVDACSGVMDKMNYPQGLIRYT 337

Query: 59  TEPGLE 64
           TE  L+
Sbjct: 338 TEHELQ 343


>gi|332087441|gb|EGI92569.1| formate hydrogenlyase subunit 6 [Shigella boydii 5216-82]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|319794270|ref|YP_004155910.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315596733|gb|ADU37799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 692

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           + C    CVEVC        +    + ++P+ C+ CG C   CP  A
Sbjct: 308 VGCN--ACVEVCSAHAIASDKQRQRIVVNPNLCVGCGACTTVCPTGA 352



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAI 55
           E C LC    CV  CP     +      L      C+ CG+CE  CP DA+
Sbjct: 561 EKCTLCL--ACVSACPSGALLDSQTAPQLRFIEKNCVQCGLCEITCPEDAV 609



 Score = 37.1 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +A+  ++C  C  C   CP  A+          +++ N
Sbjct: 556 IAVDKEKCTLCLACVSACPSGALLDSQTAPQLRFIEKN 593



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D C  C  C   CP  AI  D +  
Sbjct: 180 IDLDLCTRCNACIAACPEQAIGLDYQID 207


>gi|288559381|ref|YP_003422867.1| archaeoflavoprotein AfpA [Methanobrevibacter ruminantium M1]
 gi|288542091|gb|ADC45975.1| archaeoflavoprotein AfpA [Methanobrevibacter ruminantium M1]
          Length = 233

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C   D  EVCP            I   +CI CG C+  C   A+
Sbjct: 147 CQKCDVCDAAEVCPNGAIVA---HQEIDLLKCIGCGACKDICQYGAV 190


>gi|296136698|ref|YP_003643940.1| hypothetical protein Tint_2260 [Thiomonas intermedia K12]
 gi|294340853|emb|CAZ89248.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [Thiomonas sp. 3As]
 gi|295796820|gb|ADG31610.1| hypothetical protein Tint_2260 [Thiomonas intermedia K12]
          Length = 162

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESEQRDDGTRRTTRYDIDLTKCIFCGLCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRDD 87


>gi|237737520|ref|ZP_04568001.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419400|gb|EEO34447.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 56

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          + CI C    C   CPV      ++      + C+DCG C   CPV AI  +
Sbjct: 7  DTCIGCG--ACEGTCPVGAISATDDGKFQIGEACVDCGACAGGCPVSAISAE 56



 Score = 40.9 bits (95), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
             I  D CI CG CE  CPV AI    +   +
Sbjct: 1  MHVIDKDTCIGCGACEGTCPVGAISATDDGKFQ 33


>gi|269797247|ref|YP_003311147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
 gi|269093876|gb|ACZ23867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Veillonella
          parvula DSM 2008]
          Length = 70

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + C+ C    C E CPV C  EG+    I    CI CG C   CPV A+K
Sbjct: 8  IDDTCVKCG--ACAEDCPVQCITEGKTRFIIGKG-CIGCGDCYSICPVGAVK 56


>gi|224539806|ref|ZP_03680345.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518552|gb|EEF87657.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 373

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGL 63
           TE+CI C    CV+ C  D  +    +   I   +C+ CG C   C  D AI  D +   
Sbjct: 193 TESCIGCN--ICVKHCAHDAVHLNAGHKAEIDYAKCVGCGQCVALCQYDGAIMGDEDTSE 250

Query: 64  ELWLKINSEYA 74
            L  KI +EY+
Sbjct: 251 RLNYKI-AEYS 260


>gi|220916882|ref|YP_002492186.1| nitrate reductase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954736|gb|ACL65120.1| nitrate reductase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 489

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D C    +C   CP   +  + E G
Sbjct: 184 CNHCLNAACVAACPSGAIYKRGEDGVVLISQDVCKGWRMCVSACPYKKVYFNWETG 239


>gi|94265001|ref|ZP_01288771.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454548|gb|EAT04829.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 668

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C+ C   +CV +CP D     +    +  + C+ CG+C   CP  AI+     
Sbjct: 491 ATVQNDYCVKCL--NCVRLCPYDAPRI-DRTARVPAEHCLACGLCYGACPTGAIRLQNNS 547

Query: 62  GLEL 65
             +L
Sbjct: 548 PEQL 551


>gi|226944039|ref|YP_002799112.1| electron transport complex protein RnfB [Azotobacter vinelandii DJ]
 gi|226718966|gb|ACO78137.1| Electron transport complex, subunit B [Azotobacter vinelandii DJ]
          Length = 187

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI----KPDTEPG 62
            CI C  T C++ CPVD        +  +   EC  C +C   CPVD I      DT   
Sbjct: 109 ECIGC--TKCLQACPVDAIVGAARHMHTVIAAECTGCDLCVEPCPVDCIDMLPIADTPQD 166

Query: 63  LELWLKI 69
            +  L +
Sbjct: 167 WKWDLPL 173


>gi|332702968|ref|ZP_08423056.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553117|gb|EGJ50161.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 293

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + C  C    C   C  +          I  + C  CG+C   CPV AIK +
Sbjct: 65  ADECTQCLL--CQSRCRFEAITMEPR---ILAEHCEGCGLCAFICPVGAIKME 112


>gi|330830388|ref|YP_004393340.1| ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase [Aeromonas veronii B565]
 gi|328805524|gb|AEB50723.1| ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase [Aeromonas veronii B565]
          Length = 1191

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 34/109 (31%)

Query: 6   TENCILCKHTDCVEVCPVDC---------------------------FYEGENFLAIHPD 38
           ++ CI C   +CV VCP                              F +    L ++P+
Sbjct: 691 SDICIQCG--NCVFVCPHAALRAKFYHQDWLATAPEAAQSVPVTAKGFPDSRYTLQLYPE 748

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESL 87
           +C  CG C   CPV A   ++  G      ++       P++  +K++L
Sbjct: 749 DCTGCGQCVQACPVRAGADESHEGERAIAMMDKA-----PHLAGQKQAL 792



 Score = 37.8 bits (87), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKES 86
           H D CI CG C   CP  A++       + WL    E A   P  T K   
Sbjct: 690 HSDICIQCGNCVFVCPHAALRAKFY--HQDWLATAPEAAQSVPV-TAKGFP 737


>gi|302339228|ref|YP_003804434.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301636413|gb|ADK81840.1| dihydroorotate dehydrogenase family protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 362

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  C    CV VCP +        + +    C  CG+C   CP  A
Sbjct: 309 DICTECG--RCVTVCPYEARSMVGRQMNLDRSMCRYCGLCVTACPTGA 354



 Score = 40.5 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 33  LAIHPDECIDCGVCEPECPVDA 54
            + +PD C +CG C   CP +A
Sbjct: 304 FSYNPDICTECGRCVTVCPYEA 325


>gi|258513528|ref|YP_003189750.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
 gi|257777233|gb|ACV61127.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
          Length = 573

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 9   CILCKHTDCVEVC----PVDCFYEGENFL--AIHP--------DECIDCGVCEPECPVDA 54
           CILC    CV VC     V      E      I P          C++CG C   CP  A
Sbjct: 148 CILC--RRCVSVCENIQKVTAIAPQERGFDTVIAPAFLASLSDSTCVNCGQCALVCPTAA 205

Query: 55  IKPDTEPGLELWLKI 69
           I  +     E+W  +
Sbjct: 206 IV-EKNQVQEVWSAL 219


>gi|209920159|ref|YP_002294243.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           SE11]
 gi|209913418|dbj|BAG78492.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|324017033|gb|EGB86252.1| hydrogenase 4 subunit H [Escherichia coli MS 117-3]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|197122114|ref|YP_002134065.1| nitrate reductase subunit beta [Anaeromyxobacter sp. K]
 gi|196171963|gb|ACG72936.1| nitrate reductase, beta subunit [Anaeromyxobacter sp. K]
          Length = 489

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D C    +C   CP   +  + E G
Sbjct: 184 CNHCLNAACVAACPSGAIYKRGEDGVVLISQDVCKGWRMCVSACPYKKVYFNWETG 239


>gi|160938185|ref|ZP_02085540.1| hypothetical protein CLOBOL_03078 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438558|gb|EDP16315.1| hypothetical protein CLOBOL_03078 [Clostridium bolteae ATCC
           BAA-613]
          Length = 181

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI C    CV+ CP D      N   I   +CI CG+C  +CP   I
Sbjct: 126 CIACG--ICVKNCPADAVRIENNHAVIDEAKCIACGMCAVKCPRGII 170



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 15  TDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             CV  C  D  +        +   +C+ CG+C   CP+  I+  T  
Sbjct: 55  GSCVAACKSDAIHINSFGAAEVDRGKCVGCGLCVKACPLGLIRITTPE 102


>gi|88602686|ref|YP_502864.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188148|gb|ABD41145.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 257

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           T+ CI CK   C +VCPV     GE +   +  EC  CG C   CPV
Sbjct: 208 TDACISCKQ--CEKVCPV-----GEAYADSNKSECFLCGRCTQVCPV 247



 Score = 37.1 bits (85), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 17  CVEVCPVDCFYEGENFLAIH----PDECIDCGVCEPECPVDAIKPDTEPGL 63
           C  +CP   F    ++ ++      D CI C  CE  CPV     D+    
Sbjct: 184 CRFICPYGLFLTLASYFSLMRLTRTDACISCKQCEKVCPVGEAYADSNKSE 234


>gi|86158593|ref|YP_465378.1| respiratory nitrate reductase beta subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775104|gb|ABC81941.1| respiratory nitrate reductase beta subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 489

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D C    +C   CP   +  + E G
Sbjct: 184 CNHCLNAACVAACPSGAIYKRGEDGVVLISQDVCKGWRMCVSACPYKKVYFNWETG 239


>gi|86146002|ref|ZP_01064329.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222]
 gi|85836207|gb|EAQ54338.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222]
          Length = 553

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG +     + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCATSCPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 TYALPNPDDTQKFIE 247



 Score = 42.8 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACP 462



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 16/80 (20%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKINSEY-------AT 75
             F  +  D C         C  C   CP  A+  +        ++IN          AT
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSDKTGHKIEINPYLCQGVGTCAT 225

Query: 76  QWPN--ITTKKESLPSAAKM 93
             P   IT    +     K 
Sbjct: 226 SCPTEAITYALPNPDDTQKF 245


>gi|331001666|ref|ZP_08325189.1| hypothetical protein HMPREF0491_00051 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413387|gb|EGG92754.1| hypothetical protein HMPREF0491_00051 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 271

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T CV+ C  D  +   N   I   +CI+CG C  +CP   I+
Sbjct: 216 CIAC--TLCVKACEDDAIHMNGNVALIDYSKCINCGKCAAKCPTKVIQ 261



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
               CV+VC  D  +  +    +  ++C+ CG C   CP
Sbjct: 144 GFGSCVKVCEFDSIHIVDGIALVDREKCVACGKCVEACP 182


>gi|301060225|ref|ZP_07201092.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445737|gb|EFK09635.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 651

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 3   YVVTENC-ILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP--VDAIKPD 58
           Y+  + C   C    CV  CPV+  +   N    I    C+ CG C   CP   DA+   
Sbjct: 570 YIDLDKCARGCD--ACVGCCPVEAIFTTPNRKKGIDQKLCVKCGECVTACPPEYDAVVKV 627

Query: 59  TEPGLELWLKINSE 72
           + P L   ++  +E
Sbjct: 628 SPPHLAPIVERPAE 641


>gi|284161826|ref|YP_003400449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Archaeoglobus profundus DSM 5631]
 gi|284011823|gb|ADB57776.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Archaeoglobus profundus DSM 5631]
          Length = 81

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 4  VVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          VVT N   C +   CV VC  +     E FL I+ D+C  CG+C   CP+ A++
Sbjct: 22 VVTVNRFKCAYCGACVSVCKFNANELIETFLQIYEDKCTGCGICVKVCPMGALE 75


>gi|260892201|ref|YP_003238298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260864342|gb|ACX51448.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 244

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKP 57
            +   C+ C    CV+ C      +      I  P  CI C  C   CP    + 
Sbjct: 68  FIKRQCMHCVDPACVKACFSGALRKTPEGPVIQDPSRCIACLYCFNACPFHVPRY 122


>gi|261821824|ref|YP_003259930.1| nitrate reductase subunit beta [Pectobacterium wasabiae WPP163]
 gi|261605837|gb|ACX88323.1| nitrate reductase, beta subunit [Pectobacterium wasabiae WPP163]
          Length = 526

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 188 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 243


>gi|257792494|ref|YP_003183100.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317490364|ref|ZP_07948848.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|257476391|gb|ACV56711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316910499|gb|EFV32124.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 211

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 1   MTYVVTENCILCKHTDCVE---VCPVDCFY-EGENFLAIHPDECIDCGVCEPECPV 52
           M  V  + C+   +  CVE    CP +    +G+    +  D C  CGVCE  CP 
Sbjct: 119 MAVVQKDRCVA-YYQGCVECQKACPFEAIALDGDGHPVVDADRCNGCGVCEDVCPA 173



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 8   NCILCKHTDCVEVCPVDCFY----EGENF--LAIHPDECI----DCGVCEPECPVDAIKP 57
           +C  C    C  VCP         E +      +  D C+     C  C+  CP +AI  
Sbjct: 91  SCDFCGD--CQRVCPTGAIGAFDPEADKMGMAVVQKDRCVAYYQGCVECQKACPFEAIAL 148

Query: 58  D 58
           D
Sbjct: 149 D 149


>gi|218555264|ref|YP_002388177.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           IAI1]
 gi|300815876|ref|ZP_07096100.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
 gi|218362032|emb|CAQ99639.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           IAI1]
 gi|300531805|gb|EFK52867.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVEADLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  + +
Sbjct: 36 NPQQCIGCAACVNACPSNALTVEAD 60


>gi|193211704|ref|YP_001997657.1| sulfite reductase, dissimilatory-type subunit beta [Chlorobaculum
           parvum NCIB 8327]
 gi|193085181|gb|ACF10457.1| sulfite reductase, dissimilatory-type beta subunit [Chlorobaculum
           parvum NCIB 8327]
          Length = 359

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV        +G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVARCPVAAIRPTVVDGKKTLMVDEAKCICCGACFGACPAMEINHPEHSKFAIWV 264


>gi|253701389|ref|YP_003022578.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776239|gb|ACT18820.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 447

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
          CI C    C   CPV      E    +I   +CI C  C   C   A++    P+    L
Sbjct: 21 CIACGAR-CESSCPVSGIQMSEAGEPSILDGKCIGCAKCVKVCAAGALEMFYTPEELELL 79

Query: 64 ELWLK 68
          + W  
Sbjct: 80 KQWEA 84


>gi|150399855|ref|YP_001323622.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus vannielii SB]
 gi|150012558|gb|ABR55010.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus vannielii SB]
          Length = 62

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
          V+ + CI C    CV  CPVD   E ++    I   +C  CG C   CPVD IK +
Sbjct: 5  VIEDECIACG--ACVPSCPVDAISEKDDGKAVIDASKCNSCGDCVDICPVDCIKEE 58



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI CG C P CPVDAI    +
Sbjct: 8  DECIACGACVPSCPVDAISEKDD 30


>gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 637

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
           Y+  E C  C  T C + CP      G+N +  +   +C  CG C   CP
Sbjct: 560 YIEPEKCQAC--TSCGKKCPAGAIEGGKNQIHMVDQAKCTKCGACLQACP 607



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I P++C  C  C  +CP  AI+
Sbjct: 559 YYIEPEKCQACTSCGKKCPAGAIE 582


>gi|50120960|ref|YP_050127.1| respiratory nitrate reductase 1 subunit beta [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611486|emb|CAG74934.1| respiratory nitrate reductase 1 beta chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 526

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  GE+ +  I  D+C    +C   CP   I  + + G
Sbjct: 188 CEHCLNPACVATCPSGAIYKRGEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 243


>gi|27381853|ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobium japonicum USDA
           110]
 gi|27355022|dbj|BAC52007.1| blr6742 [Bradyrhizobium japonicum USDA 110]
          Length = 599

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 33/80 (41%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-------------------------------LA 34
           T  CI C    CV++CP+DC    EN                                + 
Sbjct: 497 TSLCIECD--ACVDICPMDCITFTENGEEPDLRQRLKAPSLHPDQDLYVSSDLKTGRVMV 554

Query: 35  IHPDECIDCGVCEPECPVDA 54
              D C+ CG+C   CP  A
Sbjct: 555 KDEDVCLHCGLCAERCPTGA 574



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 40  CIDCGVCEPECPVDAI---KPDTEPGLELWLK 68
           CI+C  C   CP+D I   +   EP L   LK
Sbjct: 500 CIECDACVDICPMDCITFTENGEEPDLRQRLK 531


>gi|194432977|ref|ZP_03065260.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012]
 gi|194418704|gb|EDX34790.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012]
 gi|320180857|gb|EFW55780.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           boydii ATCC 9905]
 gi|332088651|gb|EGI93764.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 155-74]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|15803237|ref|NP_289269.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15832830|ref|NP_311603.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|74313287|ref|YP_311706.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sonnei
           Ss046]
 gi|82545205|ref|YP_409152.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii
           Sb227]
 gi|110806653|ref|YP_690173.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella
           flexneri 5 str. 8401]
 gi|157162166|ref|YP_001459484.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           HS]
 gi|168749955|ref|ZP_02774977.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755465|ref|ZP_02780472.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762881|ref|ZP_02787888.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768811|ref|ZP_02793818.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774748|ref|ZP_02799755.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778702|ref|ZP_02803709.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787975|ref|ZP_02812982.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC869]
 gi|168800199|ref|ZP_02825206.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC508]
 gi|170019034|ref|YP_001723988.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           ATCC 8739]
 gi|188492377|ref|ZP_02999647.1| iron-sulfur binding domain protein [Escherichia coli 53638]
 gi|191166826|ref|ZP_03028652.1| formate hydrogenlyase, subunit F [Escherichia coli B7A]
 gi|193065016|ref|ZP_03046091.1| formate hydrogenlyase, subunit F [Escherichia coli E22]
 gi|194427901|ref|ZP_03060447.1| formate hydrogenlyase, subunit F [Escherichia coli B171]
 gi|194438985|ref|ZP_03071069.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1]
 gi|195938470|ref|ZP_03083852.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805909|ref|ZP_03248246.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813713|ref|ZP_03255042.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818938|ref|ZP_03259258.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396172|ref|YP_002272183.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327035|ref|ZP_03443118.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547772|ref|YP_002381563.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia
           fergusonii ATCC 35469]
 gi|253772425|ref|YP_003035256.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037759|ref|ZP_04871817.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
 gi|254162651|ref|YP_003045759.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B str. REL606]
 gi|254794660|ref|YP_003079497.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|260845363|ref|YP_003223141.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O103:H2 str. 12009]
 gi|261226014|ref|ZP_05940295.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256728|ref|ZP_05949261.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291284047|ref|YP_003500865.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415970|ref|ZP_06658610.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B185]
 gi|300930578|ref|ZP_07145970.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|301027130|ref|ZP_07190499.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|307312857|ref|ZP_07592487.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309795180|ref|ZP_07689599.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|312973070|ref|ZP_07787243.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70]
 gi|331654197|ref|ZP_08355197.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M718]
 gi|331674228|ref|ZP_08374988.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA280]
 gi|331684333|ref|ZP_08384925.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H299]
 gi|12517168|gb|AAG57827.1|AE005500_6 probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)
           [Escherichia coli O157:H7 str. EDL933]
 gi|13363047|dbj|BAB36999.1| formate hydrogenlyase subunit-7 component F [Escherichia coli
           O157:H7 str. Sakai]
 gi|73856764|gb|AAZ89471.1| probable iron-sulfur protein of hydrogenase 3 [Shigella sonnei
           Ss046]
 gi|81246616|gb|ABB67324.1| probable iron-sulfur protein of hydrogenase 3 [Shigella boydii
           Sb227]
 gi|110616201|gb|ABF04868.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)
           [Shigella flexneri 5 str. 8401]
 gi|157067846|gb|ABV07101.1| formate hydrogenlyase, subunit F [Escherichia coli HS]
 gi|169753962|gb|ACA76661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|187769586|gb|EDU33430.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015821|gb|EDU53943.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487576|gb|EDU62679.1| iron-sulfur binding domain protein [Escherichia coli 53638]
 gi|189003527|gb|EDU72513.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357266|gb|EDU75685.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362055|gb|EDU80474.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366888|gb|EDU85304.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372135|gb|EDU90551.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC869]
 gi|189377500|gb|EDU95916.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC508]
 gi|190903197|gb|EDV62920.1| formate hydrogenlyase, subunit F [Escherichia coli B7A]
 gi|192927313|gb|EDV81932.1| formate hydrogenlyase, subunit F [Escherichia coli E22]
 gi|194414134|gb|EDX30410.1| formate hydrogenlyase, subunit F [Escherichia coli B171]
 gi|194422106|gb|EDX38109.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1]
 gi|208725710|gb|EDZ75311.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734990|gb|EDZ83677.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739061|gb|EDZ86743.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157572|gb|ACI35005.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761900|gb|ACI79262.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761902|gb|ACI79263.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761904|gb|ACI79264.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761906|gb|ACI79265.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|217319402|gb|EEC27827.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           TW14588]
 gi|218355313|emb|CAQ87920.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia
           fergusonii ATCC 35469]
 gi|222034414|emb|CAP77156.1| Formate hydrogenlyase subunit 6 [Escherichia coli LF82]
 gi|226839383|gb|EEH71404.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
 gi|242378277|emb|CAQ33052.1| formate hydrogenlyase complex iron-sulfur protein, subunit of
           hydrogenase 3 and formate hydrogenlyase complex
           [Escherichia coli BL21(DE3)]
 gi|253323469|gb|ACT28071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974552|gb|ACT40223.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           B str. REL606]
 gi|253978719|gb|ACT44389.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BL21(DE3)]
 gi|254594060|gb|ACT73421.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|257760510|dbj|BAI32007.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O103:H2 str. 12009]
 gi|290763920|gb|ADD57881.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str.
           CB9615]
 gi|291432159|gb|EFF05141.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B185]
 gi|300395162|gb|EFJ78700.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|300461520|gb|EFK25013.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|306907292|gb|EFN37798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|308121151|gb|EFO58413.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|309703079|emb|CBJ02411.1| formate hydrogenlyase subunit 6 [Escherichia coli ETEC H10407]
 gi|310333012|gb|EFQ00226.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70]
 gi|312947249|gb|ADR28076.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315061996|gb|ADT76323.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           W]
 gi|315298792|gb|EFU58046.1| hydrogenase 4 subunit H [Escherichia coli MS 16-3]
 gi|320173427|gb|EFW48626.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           dysenteriae CDC 74-1112]
 gi|320186506|gb|EFW61234.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           flexneri CDC 796-83]
 gi|320189052|gb|EFW63711.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. EC1212]
 gi|320640363|gb|EFX09902.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320656760|gb|EFX24648.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662303|gb|EFX29700.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667354|gb|EFX34312.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323159852|gb|EFZ45823.1| formate hydrogenlyase subunit 6 [Escherichia coli E128010]
 gi|323167105|gb|EFZ52823.1| formate hydrogenlyase subunit 6 [Shigella sonnei 53G]
 gi|323172992|gb|EFZ58623.1| formate hydrogenlyase subunit 6 [Escherichia coli LT-68]
 gi|323377421|gb|ADX49689.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           KO11]
 gi|323935724|gb|EGB32038.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941449|gb|EGB37632.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323960620|gb|EGB56246.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971551|gb|EGB66784.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|324111345|gb|EGC05327.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|325496239|gb|EGC94098.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia
           fergusonii ECD227]
 gi|326339208|gb|EGD63023.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. 1044]
 gi|326342909|gb|EGD66677.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. 1125]
 gi|331047579|gb|EGI19656.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M718]
 gi|331068322|gb|EGI39717.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA280]
 gi|331077948|gb|EGI49154.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H299]
 gi|332091881|gb|EGI96959.1| formate hydrogenlyase subunit 6 [Shigella boydii 3594-74]
 gi|332344601|gb|AEE57935.1| formate hydrogenlyase subunit 6 [Escherichia coli UMNK88]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|302343661|ref|YP_003808190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640274|gb|ADK85596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 332

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLA-IHPDECIDCGVCEPECPVDAI 55
           E C  C    C E C        EGE   + +  ++C+ CG+C   CP +AI
Sbjct: 268 EACTGCGL--CHERCYFGAISWSEGEGSASQVDAEKCLGCGLCMVTCPAEAI 317



 Score = 37.1 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            I P+ C  CG+C   C   AI
Sbjct: 264 EIDPEACTGCGLCHERCYFGAI 285


>gi|295095042|emb|CBK84132.1| formate dehydrogenase beta subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 300

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 155



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVNVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEDMK 193


>gi|213018798|ref|ZP_03334606.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|212995749|gb|EEB56389.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 125

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENF---------LAIHPDECIDCGVCEPECPVDAI 55
          E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 24 ERCIACKL--CEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 80



 Score = 34.0 bits (77), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + E   +
Sbjct: 24 ERCIACKLCEVICPAQAIVIEAEERED 50


>gi|147821791|emb|CAN65893.1| hypothetical protein VITISV_021090 [Vitis vinifera]
          Length = 599

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV      C           I  + CI CG+C  +CP +A
Sbjct: 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEA 69

Query: 55 IK 56
          I+
Sbjct: 70 IQ 71


>gi|134045838|ref|YP_001097324.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C5]
 gi|132663463|gb|ABO35109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanococcus maripaludis C5]
          Length = 154

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+ C      C +VCPV+   E +  L +  + CI C +C   CP+ A
Sbjct: 41 CLQCHPDKAPCKQVCPVNAIEELDGALVVDEESCILCRLCMIACPIGA 88


>gi|114776888|ref|ZP_01451931.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114552974|gb|EAU55405.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 548

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           NC  C    C   CP D   +   G+ +L    D+C  C  C  +CP  AI+  +E  ++
Sbjct: 488 NCFECDG--CYGSCPEDAIIKLGKGKRYLY-DYDKCTGCASCFEQCPCHAIEMVSEDAVQ 544


>gi|91773344|ref|YP_566036.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91712359|gb|ABE52286.1| conserved methanogen protein with ferredoxin domains
           [Methanococcoides burtonii DSM 6242]
          Length = 540

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 8   NCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECID--CGVCEPECPVDAIKP 57
            CI C    C   CP D       +GE +   + + C+   C  C   CPVDAI  
Sbjct: 480 ECIRCGQ--CEVECPEDAIKIIERDGELYANYNSERCLGTSCRRCVAVCPVDAIHY 533



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           H  ECI CG CE ECP DAIK   E   EL+   NSE
Sbjct: 477 HAPECIRCGQCEVECPEDAIKI-IERDGELYANYNSE 512


>gi|325261257|ref|ZP_08127995.1| putative F420H2-dehydrogenase [Clostridium sp. D5]
 gi|324032711|gb|EGB93988.1| putative F420H2-dehydrogenase [Clostridium sp. D5]
          Length = 393

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFL-----AIHPDECIDCGVCEPECP 51
          NC  C    CV+ CP  C    ++        I    CI+C  C   CP
Sbjct: 11 NCTGCL--ACVDSCPQKCIEVDKDKYGFIVPHIDESNCINCNKCIKICP 57


>gi|323701850|ref|ZP_08113520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
 gi|323533154|gb|EGB23023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum nigrificans DSM 574]
          Length = 54

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M + +T+ C+ C    C++ CP +   EGE  +      C +CG C   CP  AI  +
Sbjct: 1  MAFKITDECLACG--TCLDSCPNNAIEEGE--IFKITTACENCGTCVDVCPTGAIIEE 54


>gi|315651314|ref|ZP_07904342.1| electron transport complex protein RnfB [Eubacterium saburreum DSM
           3986]
 gi|315486466|gb|EFU76820.1| electron transport complex protein RnfB [Eubacterium saburreum DSM
           3986]
          Length = 271

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T CV  C  D  +   N   I   +CI+CG C  +CP   I+
Sbjct: 216 CIAC--TMCVRACEDDAIHMNGNVALIDYSKCINCGKCAAKCPTKVIQ 261



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
               CV+VC  D  +  +    +  D+C+ CG C   CP
Sbjct: 144 GFGSCVKVCEFDSIHIVDGIALVDRDKCVACGKCVDACP 182


>gi|315921831|ref|ZP_07918071.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695706|gb|EFS32541.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 343

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C    CV  CP     +G+  L     +CI C  C   C   A   +T 
Sbjct: 274 DLCTHCGL--CVVRCPAGAITKGDE-LHTDEAKCIKCCACVKACVRKARVYETP 324



 Score = 37.4 bits (86), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             D C  CG+C   CP  AI    E
Sbjct: 272 DEDLCTHCGLCVVRCPAGAITKGDE 296


>gi|297539097|ref|YP_003674866.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
 gi|297258444|gb|ADI30289.1| cytochrome c oxidase accessory protein CcoG [Methylotenera sp. 301]
          Length = 505

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  + CV+VCP                ECI CG C   C
Sbjct: 269 SCIDC--SLCVQVCPTGIDIRDGLQY-----ECIGCGACADVC 304


>gi|283781842|ref|YP_003372597.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283440295|gb|ADB18737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 559

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE-NFLAIH-PDECIDCGVCEPECPVDAIKP 57
           VT  C  C    C++ CPV  + +     +  H  D+CI C  C   CP +  + 
Sbjct: 117 VTTACHHCVEPGCLQGCPVQAYDKDPLTGIVRHLDDQCIGCQYCILMCPYEVPQY 171


>gi|258514628|ref|YP_003190850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfotomaculum acetoxidans DSM 771]
 gi|257778333|gb|ACV62227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfotomaculum acetoxidans DSM 771]
          Length = 1480

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 2    TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
              V  + C  C    CV  CP       E   A I   +C  CG C  ECP  AI+    
Sbjct: 1402 AVVDEDKCAACL--TCVRTCPFGVPKINERHRAQIESVQCQGCGTCVGECPNKAIQLQHY 1459

Query: 61   PGLEL-------WLKIN 70
              ++L       + +IN
Sbjct: 1460 KDIQLIGKVEGMFYEIN 1476


>gi|160893288|ref|ZP_02074075.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50]
 gi|156864980|gb|EDO58411.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50]
          Length = 622

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 3   YVVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++ T+ CI C    C+    CP    Y  E  + I    C  C +C   CPV AI
Sbjct: 562 HIDTDACIGC--QKCIREIGCP--ALYTFEGKVCIDESLCTGCTLCSQLCPVHAI 612



 Score = 33.6 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPE--CPV 52
           P     +    + I  D CI C  C  E  CP 
Sbjct: 550 PCIAITKSSRCMHIDTDACIGCQKCIREIGCPA 582


>gi|332298288|ref|YP_004440210.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Treponema brennaborense DSM 12168]
 gi|332181391|gb|AEE17079.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Treponema brennaborense DSM 12168]
          Length = 411

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          V   C  CK   C  VC  +        EG  +  I  ++CIDCG C   CP 
Sbjct: 7  VKSGCCGCKV--CASVCKTNAISFESDEEGFWYPIIDGNKCIDCGQCRKVCPA 57


>gi|295700902|ref|YP_003608795.1| formate dehydrogenase subunit beta [Burkholderia sp. CCGE1002]
 gi|295440115|gb|ADG19284.1| formate dehydrogenase, beta subunit [Burkholderia sp. CCGE1002]
          Length = 307

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +   H + CI CG C   CP D
Sbjct: 98  DGCMHCEDPGCLKACPAPGAIVQYTNGIVDFHQENCIGCGFCIAGCPFD 146


>gi|260892959|ref|YP_003239056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865100|gb|ACX52206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 416

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 22/78 (28%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEG------------------ENFLAIHPDECID--CG 44
           VT  C  C    CVEVCP +   E                        I    C    C 
Sbjct: 102 VTAACTACG--KCVEVCPAERPNEFNYNLDKTKAIYLPHIFAFPYKYVIDMQACQGTSCS 159

Query: 45  VCEPECPVDAIKPDTEPG 62
            C   CPV AI  + +P 
Sbjct: 160 KCVEVCPVKAIDLNMQPE 177


>gi|237741880|ref|ZP_04572361.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 4_1_13]
 gi|229429528|gb|EEO39740.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 4_1_13]
          Length = 324

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A
Sbjct: 172 DRCVACG--ACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSA 220


>gi|218885697|ref|YP_002435018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756651|gb|ACL07550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAI 55
           + C+ C    C   C  D     E    +I+ + C+ CG C   C  DAI
Sbjct: 247 DKCVGC--RTCARYCNQDAITFNEEQKASINHELCVGCGRCIATCNFDAI 294


>gi|210616091|ref|ZP_03290945.1| hypothetical protein CLONEX_03164 [Clostridium nexile DSM 1787]
 gi|210149946|gb|EEA80955.1| hypothetical protein CLONEX_03164 [Clostridium nexile DSM 1787]
          Length = 72

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          + +NC+ C    C++VCP    + E      ++ D CI CG C  ECP   I
Sbjct: 14 IGKNCVACG--CCMKVCPKGAIHIELGIIAKVNKDACIGCGKCARECPAGII 63


>gi|297619219|ref|YP_003707324.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
 gi|297378196|gb|ADI36351.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
          Length = 293

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C    C + C  +     +N   +    C DCG+C   CPV+AI   T P
Sbjct: 70  CTKCGD--CAKYCNFNALAITKNSALVFEKLCHDCGLCYEVCPVNAISEITRP 120


>gi|117617630|ref|YP_857017.1| hydrogenase-4 component H [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|117559037|gb|ABK35985.1| hydrogenase-4 component H [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 185

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C + CP +          GE    I    CI CG CE  CP  AI
Sbjct: 37 ADQCIAC--AACTKACPANALVMEVDMETGERRWEISMARCIFCGRCEEVCPTRAI 90



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 38 DECIDCGVCEPECPVDAI--KPDTEPGLELW 66
          D+CI C  C   CP +A+  + D E G   W
Sbjct: 38 DQCIACAACTKACPANALVMEVDMETGERRW 68


>gi|89892933|ref|YP_516420.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89332381|dbj|BAE81976.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 190

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            Y ++ +C  C+   CV+ CP    Y  E +  + +  ++C+ CG C   CP  A K
Sbjct: 60  AYWLSMSCNHCQEPKCVQNCPAGAMYKREEDGIVLVDQNKCLGCGYCTWSCPYGAPK 116


>gi|114562199|ref|YP_749712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Shewanella frigidimarina NCIMB 400]
 gi|114333492|gb|ABI70874.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 85

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++ ++CI C    C   CP +    GE    I P  C +C        C   CP+D 
Sbjct: 1  MALIIDDSCINCD--MCEPECPNEAITMGEEVYEIDPSLCTECVGHYDKPTCISVCPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IAID 62



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             I  D CI+C +CEPECP +AI    E
Sbjct: 1  MALIIDDSCINCDMCEPECPNEAITMGEE 29


>gi|330829824|ref|YP_004392776.1| hydrogenase-4 component H [Aeromonas veronii B565]
 gi|328804960|gb|AEB50159.1| Hydrogenase-4 component H [Aeromonas veronii B565]
          Length = 185

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAI 55
           + CI C    C + CP +          GE    I    CI CG CE  CP  AI
Sbjct: 37 ADQCIAC--AACTKACPANALVMEVDMETGERRWEISMARCIFCGRCEEVCPTRAI 90



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 38 DECIDCGVCEPECPVDAI--KPDTEPGLELW 66
          D+CI C  C   CP +A+  + D E G   W
Sbjct: 38 DQCIACAACTKACPANALVMEVDMETGERRW 68


>gi|325849927|ref|ZP_08170966.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479951|gb|EGC83034.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 438

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 23/71 (32%)

Query: 5   VTENCILCKHTDCVEVCPV-------------DCFYEGENFLAIHPDECIDCGVCEPECP 51
           VT  CI C    CV VCPV             + F + ++   +    CI+CG C   CP
Sbjct: 363 VTNPCIRC--AKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILD---CIECGSCSYICP 417

Query: 52  -----VDAIKP 57
                V+AI+ 
Sbjct: 418 SKRPLVEAIRF 428


>gi|325264016|ref|ZP_08130749.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
 gi|324031054|gb|EGB92336.1| iron-sulfur cluster-binding protein [Clostridium sp. D5]
          Length = 204

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            +  CV+ CP D  +  E    +  ++C  CG C   CP   I+
Sbjct: 146 GYGTCVKACPFDAIHIVEGIAVVDKEKCKACGKCIAACPKHLIE 189


>gi|313888764|ref|ZP_07822426.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845241|gb|EFR32640.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 294

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y V ++CI C    C  VC +D           +  ECI CG C   CP  AI
Sbjct: 232 YHVDDSCISCG--KCKRVCKMDVDMSKNQ----NALECIRCGDCLRACPTSAI 278


>gi|313206207|ref|YP_004045384.1| NADH dehydrogenase subunit i [Riemerella anatipestifer DSM 15868]
 gi|312445523|gb|ADQ81878.1| NADH dehydrogenase subunit I [Riemerella anatipestifer DSM 15868]
 gi|325336346|gb|ADZ12620.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Riemerella anatipestifer RA-GD]
          Length = 175

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-------ENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +            E  L           I+   CI CG+CE  
Sbjct: 71  ERCTACGL--CAVACPAEAITMTSAERTKEEKHLYREEKYASTYEINMLRCIFCGLCEEA 128

Query: 50  CPVDAIK 56
           CP  AI 
Sbjct: 129 CPKSAIY 135


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            + C  C  T C   CP        +    I   +C+ CG C  +C   AI  +
Sbjct: 543 ADKCKGC--TLCARNCPNGAISGKLKEPHVIDQSKCLKCGACMEKCRFGAIYKE 594



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     +      I  D+C  C +C   CP  AI
Sbjct: 528 CPAG-VCKALLSYKIDADKCKGCTLCARNCPNGAI 561


>gi|282164659|ref|YP_003357044.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
 gi|282156973|dbj|BAI62061.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
          Length = 786

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    CV++CP    Y     + I P  CI  G C   CP  AI   +     L+
Sbjct: 576 EKCTSCG--ACVKLCPYGAAY-TNGRITIDPLSCIGLGGCILRCPEHAISLPSCSDEALY 632

Query: 67  LKINSEYA 74
            +I+   A
Sbjct: 633 ARIDGMLA 640



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIK 56
             +  I  ++C  CG C   CP  A  
Sbjct: 568 PKYAVIDHEKCTSCGACVKLCPYGAAY 594



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 20/71 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           ++  + C+ C    C + CPV    E                    +   I    C  CG
Sbjct: 239 HIDPKKCMSCG--KCAQACPVTVKDEWNAMLSKRKAAYRPFPQAVPSSYTIDDKACKKCG 296

Query: 45  VCEPECPVDAI 55
            C   C   AI
Sbjct: 297 SCVKACGAGAI 307


>gi|296125194|ref|YP_003632446.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Brachyspira murdochii DSM 12563]
 gi|296017010|gb|ADG70247.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
          protein [Brachyspira murdochii DSM 12563]
          Length = 867

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPEC 50
           C  C  + C  +CP +     EN        I+ D+C +CG+C  +C
Sbjct: 13 ECTGC--SVCYHICPHNAINMIENEKGFYNPVINKDKCTNCGICVKQC 58


>gi|258405500|ref|YP_003198242.1| ferredoxin-dependent glutamate synthase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797727|gb|ACV68664.1| ferredoxin-dependent glutamate synthase [Desulfohalobium retbaense
           DSM 5692]
          Length = 544

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 28/77 (36%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-----------------ENFLAI--------HPDE-C 40
           + C LC    C  VCPV     G                 EN  +I         P + C
Sbjct: 26  DKCTLCG--RCTSVCPVQAIDLGVFRKREIATPLGLCGRPENSFSIFYGIRQHTDPAKAC 83

Query: 41  IDCGVCEPECPVDAIKP 57
           I C +C   CP DAIKP
Sbjct: 84  IGCAMCSMVCPNDAIKP 100



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 36 HPDECIDCGVCEPECPVDAI 55
          + D+C  CG C   CPV AI
Sbjct: 24 NKDKCTLCGRCTSVCPVQAI 43


>gi|218706214|ref|YP_002413733.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UMN026]
 gi|293406212|ref|ZP_06650138.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1412]
 gi|298381949|ref|ZP_06991546.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300899959|ref|ZP_07118162.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|331664274|ref|ZP_08365180.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA143]
 gi|218433311|emb|CAR14211.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           UMN026]
 gi|284922656|emb|CBG35744.1| formate hydrogenlyase subunit 6 [Escherichia coli 042]
 gi|291426218|gb|EFE99250.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1412]
 gi|298277089|gb|EFI18605.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300356468|gb|EFJ72338.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|331058205|gb|EGI30186.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA143]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|212695714|ref|ZP_03303842.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677387|gb|EEB36994.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 443

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 23/71 (32%)

Query: 5   VTENCILCKHTDCVEVCPV-------------DCFYEGENFLAIHPDECIDCGVCEPECP 51
           VT  CI C    CV VCPV             + F + ++   +    CI+CG C   CP
Sbjct: 368 VTNPCIRC--AKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILD---CIECGSCSYICP 422

Query: 52  -----VDAIKP 57
                V+AI+ 
Sbjct: 423 SKRPLVEAIRF 433


>gi|194430838|ref|ZP_03063205.1| ferredoxin [Escherichia coli B171]
 gi|194411118|gb|EDX27573.1| ferredoxin [Escherichia coli B171]
          Length = 98

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          E CI C   +C   CP    Y  ++   I  +P++C  C  C   C   A++   E  +E
Sbjct: 38 EKCIHCG--NCTAACPTGALYVEKDTFYIRFNPEKCTACEFCVAVCITKAMEVHVESEVE 95

Query: 65 LWL 67
           + 
Sbjct: 96 SFT 98



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
          E  +  + ++CI CG C   CP  A+  + +     +++ N E
Sbjct: 30 EQQIIKNEEKCIHCGNCTAACPTGALYVEKD---TFYIRFNPE 69


>gi|253701647|ref|YP_003022836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251776497|gb|ACT19078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 432

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 6   TEN--CILCKHTDCVEVCPVDCFY-----EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           T+   C  C    CV +CPVD        EG    A   ++ + C+ CGVC   C   A+
Sbjct: 287 TDPARCDGCG--RCVAICPVDAISLVREPEGSGMPAKARLNSELCLGCGVCARNCHTKAV 344

Query: 56  KPDTEP 61
           + +   
Sbjct: 345 RLEARE 350



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEP---GLELWLKINSEY 73
            P  C  CG C   CPVDAI    EP   G+    ++NSE 
Sbjct: 288 DPARCDGCGRCVAICPVDAISLVREPEGSGMPAKARLNSEL 328


>gi|158423300|ref|YP_001524592.1| NADH dehydrogenase subunit I [Azorhizobium caulinodans ORS 571]
 gi|172047937|sp|A8I407|NUOI_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|158330189|dbj|BAF87674.1| NADH-quinone oxidoreductase chain I protein [Azorhizobium
           caulinodans ORS 571]
          Length = 162

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP        G              I   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAI 117



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF 32
           CI C    C E CPVD   EG NF
Sbjct: 102 CIYCGF--CQEACPVDAIVEGPNF 123



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  +  P
Sbjct: 60 ERCIACKLCEAICPAQAITIEAGP 83


>gi|150403020|ref|YP_001330314.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150034050|gb|ABR66163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 58

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y V E+ CI C    CV  CP +   E  +    I P +C  CG C   CPV  IK +
Sbjct: 1  MAYKVNEDECIACG--ACVPSCPENAISEKADGKAVIDPAKCTGCGDCADICPVACIKEE 58


>gi|157830382|pdb|1BLU|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Chromatium
          Vinosum
          Length = 82

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC------GVCEPECPVDAIKPD 58
          +T+ CI C    C   CP     +G+    I P  C +C        C   CPVD I  D
Sbjct: 4  ITDECINCDV--CEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCIIKD 61



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/23 (65%), Positives = 16/23 (69%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP  AI    E
Sbjct: 6  DECINCDVCEPECPNGAISQGDE 28


>gi|94311696|ref|YP_584906.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355548|gb|ABF09637.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus
           metallidurans CH34]
          Length = 726

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 15  TDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
           T C+++C          +G+  + + P+ C+ CG C   CP  AI     PG E + +
Sbjct: 346 TACIDICSTQAISSHWRDGKGRIEVTPNLCMGCGACTTVCPSGAISYGY-PGPETFGE 402



 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           V T  C LC    CV  CP     +      LA     C+ CG+CE  CP DAI
Sbjct: 590 VDTARCTLC--MACVGACPTQALRDNAERPVLAFVERNCVQCGLCEKTCPEDAI 641



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 6/59 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTEPGLE 64
           + C  C    C+  CP       +    I  D C D   C   C    AI  D     E
Sbjct: 220 DLCTRCN--ACIAACPEQAI---DFSYQIDLDRCRDHRECVKACGAAAAIDFDRPAATE 273



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP  AI
Sbjct: 217 IDLDLCTRCNACIAACPEQAI 237


>gi|328948503|ref|YP_004365840.1| phosphoadenosine phosphosulfate reductase [Treponema succinifaciens
           DSM 2489]
 gi|328448827|gb|AEB14543.1| phosphoadenosine phosphosulfate reductase [Treponema succinifaciens
           DSM 2489]
          Length = 569

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPE 49
            C  C    C  VC         N   I+P++C+ C  C  E
Sbjct: 512 ACRKCL--KCESVCRSGAISLAGNKYYINPEKCVHCKKCVTE 551


>gi|209761898|gb|ACI79261.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|320645910|gb|EFX14891.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651210|gb|EFX19645.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H- str. H 2687]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|297565434|ref|YP_003684406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Meiothermus silvanus DSM 9946]
 gi|296849883|gb|ADH62898.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
           silvanus DSM 9946]
          Length = 324

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 11/73 (15%)

Query: 5   VTENCILCKHTDCVEVCP---VDCFYEGENFLA------IHPDECIDCGVCEPECPVDAI 55
           V E C LC    C  VCP   V+   EG   L+      ++   C  CG C   CP   I
Sbjct: 240 VAEGCTLC--PVCTNVCPTGAVERIREGVEGLSEEYVLKLNVSACTGCGACVNSCPPQVI 297

Query: 56  KPDTEPGLELWLK 68
             +     E++ +
Sbjct: 298 TLEEAGPAEIFGE 310



 Score = 44.0 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          C +VCP          + I    C  CG+C   CP  A++    P  E
Sbjct: 39 CQQVCPHGAIRLENFTVEIDEALCTGCGLCTQVCPGVALEFPLGPVQE 86


>gi|218887774|ref|YP_002437095.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758728|gb|ACL09627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 255

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ C    CV VCPV   D   EG     ++P  CI C  C   CP  A
Sbjct: 74  PCMQCGKPSCVSVCPVIATDKNEEGGIVSQVYP-RCIGCRYCMASCPYHA 122


>gi|213622070|ref|ZP_03374853.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 176

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           + C +C    C   CP +     ++ L I    C  CG C   CP  A  ++ D EP 
Sbjct: 80  QECRMCG--ACWRSCPENVIQFDDDTLTIAAARCTGCGGCAAVCPHQALRLRFDVEPA 135



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I P EC  CG C   CP + I+ D +
Sbjct: 76  EISPQECRMCGACWRSCPENVIQFDDD 102


>gi|183222747|ref|YP_001840743.1| NADH-quinone oxidoreductase chain I [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912779|ref|YP_001964334.1| NADH dehydrogenase subunit I [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|226737397|sp|B0SHV5|NUOI_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737398|sp|B0SRH5|NUOI_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|167777455|gb|ABZ95756.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781169|gb|ABZ99467.1| NADH-quinone oxidoreductase chain I [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 175

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 22/83 (26%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDE------------CIDCGVCEPE 49
           E C  C    C+ +CP +  +            +HP++            CI CG+CE  
Sbjct: 76  ERCTAC--FCCMWICPANAIHIEAAEVTAERQHLHPEDKYAKKFEINLLRCIFCGLCEEA 133

Query: 50  CPVDAIKPDTEPGLELWLKINSE 72
           CP  AI  D   G       N E
Sbjct: 134 CPKGAIYLD---GTGEMAADNRE 153


>gi|94265838|ref|ZP_01289569.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93453613|gb|EAT04006.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 150

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 8   NCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C    CV VCP        +  + +  ++C  C  C   CP +
Sbjct: 58  SCYHCDDPHCVPVCPTGAMLKRADGIVYVDQEKCTGCVACVGACPWN 104


>gi|89895690|ref|YP_519177.1| hypothetical protein DSY2944 [Desulfitobacterium hafniense Y51]
 gi|89335138|dbj|BAE84733.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 367

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    C   CP         F  I    CI CG C   C   AI
Sbjct: 190 VNEERCTACG--KCKNWCPASAITVAG-FARIDEKLCIGCGECAVTCTFKAI 238


>gi|84393094|ref|ZP_00991859.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio splendidus
           12B01]
 gi|84376251|gb|EAP93134.1| Fe-S-cluster-containing hydrogenase component 1 [Vibrio splendidus
           12B01]
          Length = 228

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQ 145


>gi|323978670|gb|EGB73752.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 180

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|309790829|ref|ZP_07685373.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6]
 gi|308227116|gb|EFO80800.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6]
          Length = 439

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGE------NFLAIHPDECIDCGVCEPECPVDA 54
           + C  C    CV VCPV+     + E       +     D C+ CGVC   C   A
Sbjct: 295 QLCRGCG--RCVPVCPVNALQINQSEVGGRRRRWAVRDADLCLGCGVCYAACRHGA 348



 Score = 42.1 bits (98), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I P  C  CG C P CPV+A++
Sbjct: 292 IDPQLCRGCGRCVPVCPVNALQ 313


>gi|301059898|ref|ZP_07200787.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
 gi|300446004|gb|EFK09880.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
          Length = 271

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA------IKPDTE 60
           C  C +  CV VCP    +  E +  + +    CI C  C   CP  +      I  +  
Sbjct: 123 CNHCYNPPCVRVCPTQATFKREWDGIVEMDMHRCIGCRFCMAACPYGSRSFNFGIPREAP 182

Query: 61  PGLELWLKINSEYATQWPNITTKK 84
             L      N EY  +   +  K 
Sbjct: 183 KKLNPDFPTNKEYPERSKGVVEKC 206


>gi|242041649|ref|XP_002468219.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor]
 gi|241922073|gb|EER95217.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor]
          Length = 604

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-----------AIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C       L            I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVTSASKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|261339875|ref|ZP_05967733.1| formate dehydrogenase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288317784|gb|EFC56722.1| formate dehydrogenase, beta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 294

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C+   C++ CP      +  N +     D CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCEDPGCLKACPSAGAIIQYANGIVDFQQDNCIGCGYCIAGCPFNVPRLNKEDN 155


>gi|218709918|ref|YP_002417539.1| hypothetical protein VS_1931 [Vibrio splendidus LGP32]
 gi|218322937|emb|CAV19114.1| Protein nrfC homolog precursor [Vibrio splendidus LGP32]
          Length = 228

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVD 53
           +C  C +  CV VCP    Y  E    + +H ++C+ CG C   CP  
Sbjct: 98  SCQHCDNAPCVMVCPTGAAYKDEKTGIVDVHQEKCVGCGYCLLACPYQ 145


>gi|170769717|ref|ZP_02904170.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia albertii
           TW07627]
 gi|170121525|gb|EDS90456.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia albertii
           TW07627]
          Length = 300

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|34499295|ref|NP_903510.1| formate dehydrogenase [Chromobacterium violaceum ATCC 12472]
 gi|34105146|gb|AAQ61502.1| formate dehydrogenase [Chromobacterium violaceum ATCC 12472]
          Length = 295

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   H + CI CG C   CP +
Sbjct: 95  DGCMHCADPGCLKACPSPGAIVQYSNGIVDFHQENCIGCGYCIAGCPFN 143



 Score = 40.5 bits (94), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 17/70 (24%)

Query: 7   ENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ENCI C +  C+  CP +     + +N       +C  C           C   CP  AI
Sbjct: 128 ENCIGCGY--CIAGCPFNIPRISKEDNKAY----KCTLCSDRVAVGLEPACVKTCPTGAI 181

Query: 56  KPDTEPGLEL 65
           +  ++  ++ 
Sbjct: 182 QFGSKEDMKE 191


>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 600

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C   CPV     E +   +I    CI CG C  +C   A++
Sbjct: 550 EKCIGCG--ICARSCPVGAIDGEKKQPHSIDIKACIKCGNCLQKCKFGAVQ 598



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 21  CPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71
           CP        N L   I  ++CI CG+C   CPV AI  D E      + I +
Sbjct: 534 CPAGVC---PNLLVYTIDREKCIGCGICARSCPVGAI--DGEKKQPHSIDIKA 581


>gi|108804038|ref|YP_643975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765281|gb|ABG04163.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 183

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 19/92 (20%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGEN---------------FLAIHPDECIDCGV 45
           M  V  + CI C    C+ VCP  C    ++                  I    C+ C +
Sbjct: 42  MLTVDMDRCISCLQ--CMRVCPDHCITIVQDRRDADGSGKPRPYSMGFMIDDSRCMYCAL 99

Query: 46  CEPECPVDAIKPDTEPGLELWLKINSEYATQW 77
           C   CPV+ I    E  ++ + ++  + A Q+
Sbjct: 100 CVEVCPVNCIYHTEEFEIQAYNRL--DLARQF 129


>gi|317489034|ref|ZP_07947561.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
 gi|316911901|gb|EFV33483.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
          1_3_56FAA]
          Length = 394

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C   ++ +     C + C   C    +  L +   +CI CG C   CP  A++     
Sbjct: 33 ERCAKVRNRNVACLKCADACTSGCIALVDGELRVDAAKCIGCGTCATVCPTSALEARNPS 92

Query: 62 GLEL 65
            +L
Sbjct: 93 DAQL 96



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    C   CP          +G   +  +P EC+ CG C   CP +AI+   E
Sbjct: 294 ACSSC--RMCATFCPTGAIRKFDNDDGTLGVYHYPGECVKCGSCRDVCPENAIELLDE 349


>gi|307069587|ref|YP_003878064.1| putative NADH:ubiquinone oxidoreductase, chain I [Candidatus
           Zinderia insecticola CARI]
 gi|306482847|gb|ADM89718.1| putative NADH:ubiquinone oxidoreductase, chain I [Candidatus
           Zinderia insecticola CARI]
          Length = 164

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-----------LAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C  VCP +       +             I+  +CI CG+CE  CPV++I
Sbjct: 70  CISCKL--CESVCPANAINIKTGYNKKNNIRETIEYKINLKKCIFCGLCESSCPVNSI 125


>gi|302670181|ref|YP_003830141.1| coenzyme F420-reducing hydrogenase beta subunit [Butyrivibrio
          proteoclasticus B316]
 gi|302394654|gb|ADL33559.1| coenzyme F420-reducing hydrogenase beta subunit [Butyrivibrio
          proteoclasticus B316]
          Length = 388

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY---EGENFL--AIHPDECIDCGVCEPECP 51
          M  V  + C  C    C   CP  C     + E FL  ++   ECI CG C+  CP
Sbjct: 1  MISVNNKTCTGC--RACEHTCPKKCISMKADTEGFLIPSVDIKECIKCGACDRVCP 54


>gi|319762960|ref|YP_004126897.1| electron transport complex, rnfabcdge type, b subunit
           [Alicycliphilus denitrificans BC]
 gi|330825040|ref|YP_004388343.1| RnfABCDGE type electron transport complex subunit B [Alicycliphilus
           denitrificans K601]
 gi|317117521|gb|ADV00010.1| electron transport complex, RnfABCDGE type, B subunit
           [Alicycliphilus denitrificans BC]
 gi|329310412|gb|AEB84827.1| electron transport complex, RnfABCDGE type, B subunit
           [Alicycliphilus denitrificans K601]
          Length = 227

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V+ EN CI C  T C++ CP D            I P  C  C +C P CPVD I+ +  
Sbjct: 91  VIDENWCIGC--TLCIKACPTDAILGLNKRMHTVIAP-HCTGCELCLPACPVDCIRMENA 147

Query: 61  PGL 63
            G 
Sbjct: 148 SGQ 150


>gi|261868638|ref|YP_003256560.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413970|gb|ACX83341.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 225

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + +  +  +H + C+ C  C   CP 
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDKDTGIVDVHKELCVGCQYCIAVCPY 139


>gi|296137375|ref|YP_003644617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797497|gb|ADG32287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 736

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           V    C LC    CV  CP     +      L      C+ CG+C   CP DAI+ +
Sbjct: 602 VDASRCTLCL--SCVGACPAGALADNPQTPQLRFIEKNCVQCGLCVKTCPEDAIRLE 656



 Score = 40.5 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDA 54
             + I P  C+ CG C   CP  A
Sbjct: 372 EQIEIDPHLCVGCGACTTVCPTGA 395



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +  D C  C  C   CP  AI  D +  L+
Sbjct: 200 VDLDVCTRCNACLAACPEGAIGLDYQIDLQ 229



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +    C  C  C   CP  A+  + +     +++ N
Sbjct: 602 VDASRCTLCLSCVGACPAGALADNPQTPQLRFIEKN 637


>gi|256845223|ref|ZP_05550681.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_36A2]
 gi|256718782|gb|EEU32337.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_36A2]
          Length = 324

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A
Sbjct: 172 DRCVACG--ACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSA 220


>gi|223986391|ref|ZP_03636397.1| hypothetical protein HOLDEFILI_03709 [Holdemania filiformis DSM
          12042]
 gi|223961633|gb|EEF66139.1| hypothetical protein HOLDEFILI_03709 [Holdemania filiformis DSM
          12042]
          Length = 57

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C    C  VCPV     + +    +    CIDCG C   CPV AI
Sbjct: 8  DTCIGCG--ACAGVCPVGAIALQDDGKAGVDEGTCIDCGACVSTCPVSAI 55



 Score = 37.1 bits (85), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          +  D CI CG C   CPV AI    +
Sbjct: 5  VDKDTCIGCGACAGVCPVGAIALQDD 30


>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
           [Geobacter metallireducens GS-15]
          Length = 635

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECP 51
           ++  E C  C    C   CP +    G+  + I   ++C  CG C   CP
Sbjct: 562 HIDPEKCKACG--SCFRQCPAEAIQGGKKLIHIIDQEKCTKCGTCLDVCP 609



 Score = 42.1 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIK 56
             I P++C  CG C  +CP +AI+
Sbjct: 561 FHIDPEKCKACGSCFRQCPAEAIQ 584


>gi|73668208|ref|YP_304223.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri
          str. Fusaro]
 gi|72395370|gb|AAZ69643.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri
          str. Fusaro]
          Length = 503

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+ C    C+E C    +    + + I   +C  C  C   CP DAI    +P
Sbjct: 17 DQCMDCG--RCIENCSYGVYRREGDKILIESRKCTGCLRCVAMCPRDAITLTEKP 69



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 32 FLAIHPDECIDCGVCEPECPVD 53
           ++I  D+C+DCG C   C   
Sbjct: 11 KVSIDRDQCMDCGRCIENCSYG 32


>gi|18314097|ref|NP_560764.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
 gi|18161681|gb|AAL64946.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
          Length = 390

 Score = 47.8 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C  +      Y+  +    + P  C+ CG+C   CP +A KP+     E WL
Sbjct: 329 CTGCGL--CYNLLKCSAIYKRPDRKAHVDPALCVGCGICAEVCPFNAFKPE--GKREAWL 384

Query: 68  KI 69
           ++
Sbjct: 385 EL 386


>gi|320101017|ref|YP_004176609.1| flavoprotein [Desulfurococcus mucosus DSM 2162]
 gi|319753369|gb|ADV65127.1| flavoprotein [Desulfurococcus mucosus DSM 2162]
          Length = 237

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C LC      + CP             +   +C  C VC+  CP  AI  D E
Sbjct: 149 CSLCNWCAAADSCPTGALRHDPYHRVRVDASKCTRCYVCKDRCPYGAISFDVE 201


>gi|288575050|ref|ZP_06393407.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570791|gb|EFC92348.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1173

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 34/94 (36%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-----YEGE------NFLAIH----------------P 37
           + + CI C    C  VCP          E E      NF  I                 P
Sbjct: 687 IMDKCIQCNQ--CAMVCPHAAIRPVLLNEDEMSLAPKNFEVIDAKGKELEGLKFRMQVSP 744

Query: 38  DECIDCGVCEPECPVDAIKP-----DTEPGLELW 66
            +C+ CG C   CPV A++       T+P  E W
Sbjct: 745 LDCLGCGNCADICPVKALEMKPLATQTDPQAENW 778


>gi|331649744|ref|ZP_08350824.1| formate dehydrogenase, beta subunit [Escherichia coli M605]
 gi|281180960|dbj|BAI57290.1| formate dehydrogenase iron-sulfur subunit [Escherichia coli SE15]
 gi|330908215|gb|EGH36734.1| formate dehydrogenase O beta subunit [Escherichia coli AA86]
 gi|331041377|gb|EGI13527.1| formate dehydrogenase, beta subunit [Escherichia coli M605]
          Length = 300

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|257092939|ref|YP_003166580.1| methyl-viologen-reducing hydrogenase subunit delta [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045463|gb|ACV34651.1| methyl-viologen-reducing hydrogenase delta subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 523

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 9/57 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF-------YEGENFLAIHPDECIDCGVCEPECP 51
             V   NC  C    C+  CP             G     +  D C  CG+C   CP
Sbjct: 296 AVVDAANCTGCD--RCLADCPYAAIAMRPHPRRPGLKLAVVDADLCAGCGICAGSCP 350



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            +    C  C  C  +CP  AI
Sbjct: 297 VVDAANCTGCDRCLADCPYAAI 318


>gi|226324375|ref|ZP_03799893.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
 gi|225206823|gb|EEG89177.1| hypothetical protein COPCOM_02156 [Coprococcus comes ATCC 27758]
          Length = 299

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          E C+ C    C +VCP D     +    +  ++C  CG C+  CP
Sbjct: 51 EKCVGCG--TCAKVCPNDAITMVDGKPELDKEKCQLCGKCDNFCP 93



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
          E  L    ++C+ CG C   CP DAI
Sbjct: 43 ERELQCDKEKCVGCGTCAKVCPNDAI 68


>gi|219670113|ref|YP_002460548.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540373|gb|ACL22112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 367

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  E C  C    C   CP         F  I    CI CG C   C   AI
Sbjct: 190 VNEERCTACG--KCKNWCPASAITVAG-FARIDEKLCIGCGECAVTCTFKAI 238


>gi|121998731|ref|YP_001003518.1| sulfite reductase, dissimilatory-type subunit beta [Halorhodospira
           halophila SL1]
 gi|121590136|gb|ABM62716.1| dissimilatory sulfite reductase beta subunit [Halorhodospira
           halophila SL1]
          Length = 362

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 12  CKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV        +G+  L +   +C+ CG C P CP   I       L +W+
Sbjct: 208 CERPSVVARCPVAAIRPAVVDGKPSLEVDESKCVACGACYPPCPPMQINDPEHSRLAIWV 267

Query: 68  KINSEYATQWPN 79
             N   A   P 
Sbjct: 268 GGNHSNARGVPT 279


>gi|187731222|ref|YP_001881533.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii
           CDC 3083-94]
 gi|187428214|gb|ACD07488.1| formate hydrogenlyase, subunit F [Shigella boydii CDC 3083-94]
          Length = 180

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|116749408|ref|YP_846095.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698472|gb|ABK17660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1021

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 25/76 (32%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEG---------------ENFLAIHPDECI--- 41
           YV +  CI C    C E CP    D F EG                    I  D CI   
Sbjct: 108 YVDSSKCIACGV--CAEKCPKKVDDLFNEGLGKRKAAYVKYPQAVPLKYVIDEDNCIYFK 165

Query: 42  --DCGVCEPECPVDAI 55
              C  CE  CP  A+
Sbjct: 166 SGKCRACEKFCPAGAV 181



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 9/55 (16%)

Query: 7    ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAI 55
            E CI C    C  +CP           +G     I    C  CGVC   CP  AI
Sbjct: 949  EACIGCGL--CEALCPFGAIRLHKVIGKGFRAETISA-SCKGCGVCSASCPQKAI 1000



 Score = 41.7 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 36  HPDECIDCGVCEPECPVDAIK 56
             + CI CG+CE  CP  AI+
Sbjct: 947 DQEACIGCGLCEALCPFGAIR 967


>gi|332880667|ref|ZP_08448341.1| electron transfer flavoprotein FAD-binding domain protein
          [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681655|gb|EGJ54578.1| electron transfer flavoprotein FAD-binding domain protein
          [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 404

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+ C    C E C       G +F  +  + C  CG C   CPV A
Sbjct: 18 CVSCG--ICAESCAYGAIRMG-DFPEVDEENCRLCGGCVQACPVGA 60


>gi|256027301|ref|ZP_05441135.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. D11]
 gi|289765276|ref|ZP_06524654.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. D11]
 gi|289716831|gb|EFD80843.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. D11]
          Length = 324

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A
Sbjct: 172 DRCVACG--ACVKKCKKVSVEALKMENNKIVRDANKCIGCGECVINCPMSA 220


>gi|257066810|ref|YP_003153066.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798690|gb|ACV29345.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 267

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C +VCP D  +  +    +  ++C+ CG C   CP + I
Sbjct: 143 CVGCG--SCEKVCPFDAIHVKDGVAVVDREKCVACGKCVATCPKNII 187


>gi|225620720|ref|YP_002721978.1| ferredoxin [Brachyspira hyodysenteriae WA1]
 gi|225215540|gb|ACN84274.1| ferredoxin [Brachyspira hyodysenteriae WA1]
          Length = 275

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T  C  CK   C  VCP+      +    +   +CI CG C  +CP      D E
Sbjct: 200 VDTSKCTNCK--TCAHVCPLASIDFDDITKYV--GKCIKCGACIKKCPEHCRYYDDE 252


>gi|218709479|ref|YP_002417100.1| hypothetical protein VS_1488 [Vibrio splendidus LGP32]
 gi|218322498|emb|CAV18657.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 553

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 6   TENC----ILCKHTD-CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAI 55
           T+ C       K  + CV+ CP      EG       + I+P  C   G C   CP +AI
Sbjct: 173 TDLCAHSSRGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCATSCPTEAI 232

Query: 56  KP--DTEPGLELWLK 68
                     + +++
Sbjct: 233 TYALPNPDDTQKFIE 247



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
           +C LC    CV VCP    +       L     +CI CG+CE  CP
Sbjct: 419 DCTLC--MSCVAVCPTRALHTDGASPSLKFVEQDCIQCGLCEKACP 462



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 22/80 (27%), Gaps = 16/80 (20%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKINSEY-------AT 75
             F  +  D C         C  C   CP  A+  +        ++IN          AT
Sbjct: 166 PKFFRLDTDLCAHSSRGVKGCERCVDACPAGALSSEGSEKTGHKIEINPYLCQGVGTCAT 225

Query: 76  QWPN--ITTKKESLPSAAKM 93
             P   IT    +     K 
Sbjct: 226 SCPTEAITYALPNPDDTQKF 245


>gi|169831690|ref|YP_001717672.1| cobyrinic acid a,c-diamide synthase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638534|gb|ACA60040.1| Cobyrinic acid a,c-diamide synthase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 287

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C E+C         + +   P  C  CG C   CP +AI
Sbjct: 76  CVHCGL--CAEICRYGAIAAVGDMILTFPGMCHSCGGCFLACPAEAI 120


>gi|21227721|ref|NP_633643.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20906118|gb|AAM31315.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 60

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIK 56
          V  + C  C    CV+ CP +     E      +  DEC++CG CE  CP  AIK
Sbjct: 5  VNADECSGCG--TCVDECPSEAITLDEEKGIAVVDQDECVECGACEEACPNQAIK 57



 Score = 34.0 bits (77), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          ++ DEC  CG C  ECP +AI  D E G
Sbjct: 5  VNADECSGCGTCVDECPSEAITLDEEKG 32


>gi|116754637|ref|YP_843755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116666088|gb|ABK15115.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 168

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEP 61
           C  C+   CV VCP     +      +  + D CI C  C   C    I  D   
Sbjct: 59  CRHCEDAPCVAVCPTGALTQDAISGVVRHNKDICIGCWTCASVCTYGVIGRDRRA 113


>gi|219666198|ref|YP_002456633.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219536458|gb|ACL18197.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 190

 Score = 47.5 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
            Y ++ +C  C+   CV+ CP    Y  E +  + +  ++C+ CG C   CP  A K
Sbjct: 60  AYWLSMSCNHCQEPKCVQNCPAGAMYKREEDGIVLVDQNKCLGCGYCTWSCPYGAPK 116


>gi|332528530|ref|ZP_08404518.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
 gi|332042041|gb|EGI78379.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
          Length = 497

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP                ECI CG C   C
Sbjct: 282 DCIDC--TMCVQVCPTGIDIRKGLQY-----ECISCGACVDVC 317


>gi|325294718|ref|YP_004281232.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum
          DSM 11699]
 gi|325065166|gb|ADY73173.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum
          DSM 11699]
          Length = 505

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 9  CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTEPG 62
          C+ CK   CV+ C  D   + E    +    + C++C  CE  CP DAIK    P T   
Sbjct: 22 CVRCK--SCVDQCSFDATYYDEDLEMIVNRNENCVNCKRCEAFCPTDAIKVVKNPSTFHP 79

Query: 63 LELWLK 68
             W +
Sbjct: 80 DANWTE 85


>gi|305663975|ref|YP_003860263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
 gi|304378544|gb|ADM28383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
          aggregans DSM 17230]
          Length = 75

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          YV  E CI C    C  VCP   F    +  + I+ D+C+ C  C   CP +AI+
Sbjct: 6  YVDQEKCIGC--AQCYAVCPNKVFVIRDKKSIPINADKCVGCRACIVRCPTNAIR 58


>gi|303248978|ref|ZP_07335224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489627|gb|EFL49565.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 256

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 8   NCILCKHTDCVEVCPV---DCFYEGENFLAIHPDECIDCGVCEPECPV 52
            C  C +  CV VCPV   D   +G     I+P  CI C  C   CP 
Sbjct: 76  PCQQCGNPPCVSVCPVVATDKNEDGGIVSQIYP-RCIGCRYCVAACPY 122


>gi|255718765|ref|XP_002555663.1| KLTH0G14520p [Lachancea thermotolerans]
 gi|238937047|emb|CAR25226.1| KLTH0G14520p [Lachancea thermotolerans]
          Length = 608

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 11 LCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CK   C + C   C                    I  + CI CG+C  +CP DAI+
Sbjct: 15 KCKPKKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISENLCIGCGICVKKCPFDAIQ 71


>gi|225427605|ref|XP_002271392.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 605

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV      C           I  + CI CG+C  +CP +A
Sbjct: 11 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEA 69

Query: 55 IK 56
          I+
Sbjct: 70 IQ 71


>gi|160886328|ref|ZP_02067331.1| hypothetical protein BACOVA_04337 [Bacteroides ovatus ATCC 8483]
 gi|299146812|ref|ZP_07039880.1| putative ferredoxin [Bacteroides sp. 3_1_23]
 gi|156108213|gb|EDO09958.1| hypothetical protein BACOVA_04337 [Bacteroides ovatus ATCC 8483]
 gi|298517303|gb|EFI41184.1| putative ferredoxin [Bacteroides sp. 3_1_23]
          Length = 343

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C    CV  CP     +G+  L     +CI C  C   C   A   +T 
Sbjct: 274 DLCTHCGL--CVVRCPAGAITKGDE-LHTDEAKCIKCCACVKACVRKARVYETP 324



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             D C  CG+C   CP  AI    E
Sbjct: 272 DEDLCTHCGLCVVRCPAGAITKGDE 296


>gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha subunit [Janthinobacterium sp.
           Marseille]
 gi|151281111|gb|ABR89521.1| formate dehydrogenase alpha subunit [Janthinobacterium sp.
           Marseille]
          Length = 946

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 16/68 (23%)

Query: 4   VVTENCILCKHTDCVEVCPVD--------CFYEGENFLAIHPD------ECIDCGVCEPE 49
           V  + CI C  T CV  C  +         F      +    D       C+ CG C   
Sbjct: 151 VNLDACIQC--TRCVRACRDEQENDVIGLAFRGDHAKIVFDMDDPMGASTCVACGECVQA 208

Query: 50  CPVDAIKP 57
           CP  A+ P
Sbjct: 209 CPTGALMP 216


>gi|150400069|ref|YP_001323836.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012772|gb|ABR55224.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus vannielii SB]
          Length = 615

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V TE C  CK   C E   CP        +   I  + CI CG+C   CP +AI  +
Sbjct: 558 VDTEKCTGCK--ICFEELGCP--AIVMDRDIPNITSN-CIACGLCVAVCPFNAIINE 609



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI 35
           +T NCI C    CV VCP +      N   +
Sbjct: 587 ITSNCIACGL--CVAVCPFNAIINEGNCYEL 615


>gi|167031549|ref|YP_001666780.1| formate dehydrogenase subunit beta [Pseudomonas putida GB-1]
 gi|166858037|gb|ABY96444.1| formate dehydrogenase, beta subunit [Pseudomonas putida GB-1]
          Length = 316

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 94  DGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|104779825|ref|YP_606323.1| formate dehydrogenase-O, Fe-S subunit [Pseudomonas entomophila L48]
 gi|95108812|emb|CAK13508.1| formate dehydrogenase-O, Fe-S subunit [Pseudomonas entomophila L48]
          Length = 316

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 94  DGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|15896476|ref|NP_349825.1| hydrogenase subunit (ferredoxin) [Clostridium acetobutylicum ATCC
           824]
 gi|15026303|gb|AAK81165.1|AE007819_1 Hydrogenase subunit (ferredoxin) [Clostridium acetobutylicum ATCC
           824]
 gi|325510634|gb|ADZ22270.1| Hydrogenase subunit (ferredoxin) [Clostridium acetobutylicum EA
           2018]
          Length = 450

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 13  KHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
             T C + CP D     +N     I  D C DCG C   CP  +I    E
Sbjct: 92  GETPCQKSCPFDAILVDKNTKTSHIQKDLCTDCGNCITSCPSGSILDKIE 141


>gi|296085461|emb|CBI29193.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV      C           I  + CI CG+C  +CP +A
Sbjct: 31 VSSDRCKPKKCR-QECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEA 89

Query: 55 IK 56
          I+
Sbjct: 90 IQ 91


>gi|260888161|ref|ZP_05899424.1| iron-sulfur cluster-binding protein [Selenomonas sputigena ATCC
           35185]
 gi|330840027|ref|YP_004414607.1| protein of unknown function DUF362 [Selenomonas sputigena ATCC
           35185]
 gi|260862190|gb|EEX76690.1| iron-sulfur cluster-binding protein [Selenomonas sputigena ATCC
           35185]
 gi|329747791|gb|AEC01148.1| protein of unknown function DUF362 [Selenomonas sputigena ATCC
           35185]
          Length = 375

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C + C  D     EN   +  + C  CG C   C  +A+  +     ++ 
Sbjct: 196 ELCRGC--RRCAKECGSDAISYVENKAVVDKELCKGCGRCIGSCTFNALYNEVWDAADIL 253

Query: 67  LKINSEYAT 75
            +  +EYA 
Sbjct: 254 DRRMAEYAQ 262


>gi|302876992|ref|YP_003845625.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
 gi|307687683|ref|ZP_07630129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
 gi|302579849|gb|ADL53861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
          Length = 254

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++C+ C    C +VCP++     +        +C+DC  C   CP +AI
Sbjct: 183 VNDSCVGCN--MCKKVCPIENIEMEDKKPVW-KGKCVDCMACINICPQNAI 230



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPG 62
           D C+ C +C+  CP++ I+ + +  
Sbjct: 185 DSCVGCNMCKKVCPIENIEMEDKKP 209


>gi|187776537|ref|ZP_02993010.1| hypothetical protein CLOSPO_00042 [Clostridium sporogenes ATCC
           15579]
 gi|187775196|gb|EDU38998.1| hypothetical protein CLOSPO_00042 [Clostridium sporogenes ATCC
           15579]
          Length = 262

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TE+CI C    CV  CP          +  H + CI C  C   CP +AI  
Sbjct: 195 TEHCIKCG--MCVRNCPKGNIVFENGGVVFHSN-CILCLRCIYICPSNAIFY 243


>gi|51245519|ref|YP_065403.1| iron-sulfur cluster-binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50876556|emb|CAG36396.1| related to iron-sulfur cluster-binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    C+E+C       +    + +    C+ CG C   C   A++ + E G++ +L
Sbjct: 225 CVGCGL--CMELCQHGALSLDSNKKIQVDDQLCVGCGACLLACKTGALQVNWETGIQEFL 282

Query: 68  KINSEYATQWPNITTKKES 86
           +   EYA     + TKK  
Sbjct: 283 EKMMEYALA--VLKTKKSP 299


>gi|312136489|ref|YP_004003826.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanothermus
          fervidus DSM 2088]
 gi|311224208|gb|ADP77064.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanothermus
          fervidus DSM 2088]
          Length = 80

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          CI C    C+  CP  C  E      I+ D C  CG+CE ECPV+AIK
Sbjct: 34 CIKCN--TCILFCPEGCIDENHE---INYDYCKGCGICEEECPVNAIK 76


>gi|268610390|ref|ZP_06144117.1| hypothetical protein RflaF_12946 [Ruminococcus flavefaciens FD-1]
          Length = 247

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + V  +C+ C    C + CP               D C  C  C   CP  AI+ 
Sbjct: 177 FCVDNSCVGCGL--CAKNCPDKAIEMKGGKPHWIKDACTKCTACINRCPSKAIQY 229


>gi|255745043|ref|ZP_05418993.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101]
 gi|255737514|gb|EET92909.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101]
          Length = 504

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 17  CVEVCPVDCFY-EGENF----LAIHPDECIDCGVCEPECPVDAIKP--DTEPGLELWLK 68
           CV+ CP      EG       + I+P  C   G C   CP +AI          + +++
Sbjct: 140 CVDACPAGALSSEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQKFIE 198



 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T +C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 368 TSDCTLC--MSCVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACP 413



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 7/48 (14%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             +  + PD C         C  C   CP  A+  +        ++IN
Sbjct: 117 PKYFRLDPDLCAHSSRGVKGCERCVDACPAGALSSEGSEQTGHRIQIN 164


>gi|288942157|ref|YP_003444397.1| formate dehydrogenase subunit beta [Allochromatium vinosum DSM 180]
 gi|288897529|gb|ADC63365.1| formate dehydrogenase, beta subunit [Allochromatium vinosum DSM
           180]
          Length = 297

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C+  CP         N +   H + CI CG C   CP D
Sbjct: 96  DGCMHCADPGCLAACPAPGAIVRYSNGIVDFHQEHCIGCGYCITGCPFD 144


>gi|170755623|ref|YP_001781808.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169120835|gb|ACA44671.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 273

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           NCI CK   C  +CP+      E+   ++ + CI C  C  +CPV A   D    L+   
Sbjct: 202 NCINCKL--CANLCPIGSIDF-EDVTKLN-EICIKCCACIKKCPVGAKYFDDSGYLKHKK 257

Query: 68  KINSEY 73
           ++ + +
Sbjct: 258 ELENNF 263


>gi|152978929|ref|YP_001344558.1| formate dehydrogenase, beta subunit [Actinobacillus succinogenes
           130Z]
 gi|150840652|gb|ABR74623.1| formate dehydrogenase, beta subunit [Actinobacillus succinogenes
           130Z]
          Length = 314

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     D+CI CG C   CP +  K + E  
Sbjct: 99  DGCMHCAEPGCLKACPAPGAIIQYANGIVDFQTDKCIGCGYCIAGCPFNVPKMNDEDN 156



 Score = 40.9 bits (95), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 17/74 (22%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           T+ CI C +  C+  CP +     + +N +     +C  C           C   CP  A
Sbjct: 131 TDKCIGCGY--CIAGCPFNVPKMNDEDNRVY----KCTLCVDRVNVGQEPACVKTCPTGA 184

Query: 55  IKPDTEPGLELWLK 68
           I   T+  +  + +
Sbjct: 185 IHFGTKEEMLHYAE 198


>gi|332983171|ref|YP_004464612.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Mahella
           australiensis 50-1 BON]
 gi|332700849|gb|AEE97790.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Mahella
           australiensis 50-1 BON]
          Length = 608

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 3   YVVTEN-CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
           Y V E  C LC +  CVE   CP    +  ++  AI    C  CG+C   CPV AI P+ 
Sbjct: 552 YTVDEQICTLCNY--CVEQLGCP--ALFVIDDMPAIQ-STCAGCGLCAQICPVGAIVPEG 606

Query: 60  EP 61
           E 
Sbjct: 607 ED 608


>gi|312880247|ref|ZP_07740047.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
 gi|310783538|gb|EFQ23936.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
          Length = 387

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C    C EVCPVD     ++   +  + C+ C  C   CP  A+K    P L  W+
Sbjct: 327 ACVRC--RVCQEVCPVDALAW-DDGPVVDSNRCVQCLCCHEMCPTGAMKAAANP-LARWV 382

Query: 68  K 68
           +
Sbjct: 383 Q 383


>gi|167753237|ref|ZP_02425364.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM
          17216]
 gi|167659168|gb|EDS03298.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM
          17216]
          Length = 287

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAIKPDTEPG 62
          T +CI C    CV+VCP     + +    I   + D CI CG C   CP  +++  + P 
Sbjct: 9  TASCIRCG--KCVKVCPAWIMTQAKPGDPIGLRNIDSCIVCGHCAAVCPTGSVRHSSFPP 66

Query: 63 LE 64
           +
Sbjct: 67 DK 68



 Score = 33.6 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 35 IHPDECIDCGVCEPECPV 52
          I    CI CG C   CP 
Sbjct: 7  IDTASCIRCGKCVKVCPA 24


>gi|153806260|ref|ZP_01958928.1| hypothetical protein BACCAC_00515 [Bacteroides caccae ATCC 43185]
 gi|149130937|gb|EDM22143.1| hypothetical protein BACCAC_00515 [Bacteroides caccae ATCC 43185]
          Length = 504

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCF---------YEGENFLAIHPDECIDCGVCEPEC- 50
           + ENC+      +  +C   CP              +      ++ ++CI CG CE  C 
Sbjct: 427 IKENCVPLTDGVECGNCARHCPTGAIQMVVSDPDMADSPKIPVVNAEKCIGCGACENLCP 486

Query: 51  --PVDAIK 56
             P  AI 
Sbjct: 487 SRPFSAIY 494



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP        N L +   E       C  +C  C   CP DAI 
Sbjct: 353 AQHCTAC--QLCVSVCPNQVLRPSGNLLTLMQPEMSYERGYCRPECAKCAEVCPTDAIH 409


>gi|91788667|ref|YP_549619.1| formate dehydrogenase subunit alpha [Polaromonas sp. JS666]
 gi|91697892|gb|ABE44721.1| NAD-dependent formate dehydrogenase iron-sulfur protein /
           NAD-dependent formate dehydrogenase catalytic subunit
           [Polaromonas sp. JS666]
          Length = 945

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 16/74 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVD--------CFYEGENFLAIHPD------ECIDCGVCEPE 49
           V  + CI C  T C+  C  +         F   +  +    D       C+ CG C   
Sbjct: 151 VNLDACIQC--TRCLRACRDEQVNDVIGLAFRGDQAKIVFDMDDAMGASTCVACGECVQA 208

Query: 50  CPVDAIKPDTEPGL 63
           CP  A+ P  E  L
Sbjct: 209 CPTGALMPAREAAL 222


>gi|78042778|ref|YP_361366.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994893|gb|ABB13792.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 179

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDA 54
           C  C +  C+EVCP    Y+ E+ + +  D+ C  C  C   CP  A
Sbjct: 58  CQHCDNAPCIEVCPTGATYKREDGIVLVDDKRCAGCKYCMVACPYQA 104


>gi|78042879|ref|YP_360533.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994994|gb|ABB13893.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI C    C+ VCP       +  +   +  ++C+ CG+C   CP+  ++ D E
Sbjct: 52  CIQCGL--CINVCPTGALKRDKKTMAVVVDKEKCVGCGMCTNVCPIGVLRIDKE 103


>gi|73540385|ref|YP_294905.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117798|gb|AAZ60061.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 717

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 15  TDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           T C+++C         ++G+  + + P+ C+ CG C   CP  AI        
Sbjct: 340 TACIDICSTQAIRSQWHDGKGRIEVTPNLCMGCGACTTVCPSGAISYAYPGPE 392



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
           V T +C LC    C   CP     +      +      C+ CG+CE  CP  AI
Sbjct: 581 VDTASCTLC--MACAGACPTQALRDNPERPVLGFLERNCVQCGLCEKTCPEHAI 632



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 6/57 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PVDAIKPDTEPG 62
           + C  C    C+E CP +     +    I  D C     C   C    AI  D    
Sbjct: 214 DLCTRCN--ACIEACPENAI---DFSYQIDMDRCRAHRDCVRACGAAAAIDFDRPAA 265



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + +    C  C  C   CP  A++ + E  +  +L+ N
Sbjct: 579 VVVDTASCTLCMACAGACPTQALRDNPERPVLGFLERN 616



 Score = 34.0 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP +AI
Sbjct: 211 IDLDLCTRCNACIEACPENAI 231


>gi|46580179|ref|YP_010987.1| periplasmic [Fe] hydrogenase large subunit [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|120602431|ref|YP_966831.1| hydrogenases, Fe-only [Desulfovibrio vulgaris DP4]
 gi|130070|sp|P07598|PHFL_DESVH RecName: Full=Periplasmic [Fe] hydrogenase large subunit;
          AltName: Full=Fe hydrogenlyase
 gi|290560604|pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase
          From Desulfovibrio Desulfuricans
 gi|290560605|pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase
          From Desulfovibrio Desulfuricans
 gi|40830|emb|CAA26266.1| unnamed protein product [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46449596|gb|AAS96246.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|120562660|gb|ABM28404.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
 gi|311233830|gb|ADP86684.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
          Length = 421

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 9  CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CI C    C + CP    +   GE     H + CI+CG C   CP +AI  
Sbjct: 35 CIGCD--TCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYE 83



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          F+ I   +CI C  C   CP  AI  + 
Sbjct: 27 FVQIDEAKCIGCDTCSQYCPTAAIFGEM 54


>gi|332296916|ref|YP_004438838.1| methyl-accepting chemotaxis sensory transducer [Treponema
          brennaborense DSM 12168]
 gi|332180019|gb|AEE15707.1| methyl-accepting chemotaxis sensory transducer [Treponema
          brennaborense DSM 12168]
          Length = 690

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
          C+ C    C+ VCP     +G      ++ D CI CG C   C   A
Sbjct: 16 CVNC--HRCITVCPAKMCNDGSGNYVGVNTDLCIGCGECIEACSHGA 60


>gi|332528603|ref|ZP_08404585.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
 gi|332041919|gb|EGI78263.1| 4Fe-4S ferredoxin [Hylemonella gracilis ATCC 19624]
          Length = 88

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP +  Y G     I P  C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNEAIYLGPQIYEIDPARCTECVGHHEQPQCVQLCPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/19 (73%), Positives = 16/19 (84%)

Query: 38 DECIDCGVCEPECPVDAIK 56
          DECI+C VCEPECP +AI 
Sbjct: 7  DECINCDVCEPECPNEAIY 25


>gi|325831143|ref|ZP_08164467.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487064|gb|EGC89510.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 394

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C   ++ +     C + C   C    +  L +   +CI CG C   CP  A++     
Sbjct: 33 ERCAKVRNRNVACLKCADACTSGCIALVDGELRVDAAKCIGCGTCATVCPTSALEARNPS 92

Query: 62 GLEL 65
            +L
Sbjct: 93 DAQL 96



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    C   CP          +G   +  +P EC+ CG C   CP +AI+   E
Sbjct: 294 ACSSC--RMCATFCPTGAIRKFDNDDGTLGVYHYPGECVKCGSCRDVCPENAIELLDE 349


>gi|317493923|ref|ZP_07952340.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918250|gb|EFV39592.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 185

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           E CI C    C   CP +         EG    ++H   CI C  CE  CP  AIK   E
Sbjct: 38  EQCIACG--ACTAACPANALTMETNAREGTRTWSLHLGRCIFCARCEEVCPTAAIKLTPE 95

Query: 61  PGLELW 66
             L +W
Sbjct: 96  FELAVW 101



 Score = 40.1 bits (93), Expect = 0.100,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEP 61
          +P++CI CG C   CP +A+  +T  
Sbjct: 36 NPEQCIACGACTAACPANALTMETNA 61


>gi|300087731|ref|YP_003758253.1| ferredoxin [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527464|gb|ADJ25932.1| ferredoxin [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 243

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 19/83 (22%)

Query: 7   ENCILCKHTD--CVEVCPVDCF---YEGENFLAIHP-----DECIDCGVCEPECPVDAIK 56
           +NCILC   +  C EV  VD       G       P     ++CI CG C   CP  AI+
Sbjct: 125 DNCILCGLCNRVCAEVVGVDAISLVNRGTRREVALPFYDETNDCIACGACSYICPTKAIQ 184

Query: 57  PDTEPGLELWLKINSEYATQWPN 79
                 +   +         WPN
Sbjct: 185 MKDTKEIRTMI---------WPN 198


>gi|291543751|emb|CBL16860.1| Iron only hydrogenase large subunit, C-terminal domain
          [Ruminococcus sp. 18P13]
          Length = 556

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV       N   I  +ECI CG C   CP +A
Sbjct: 11 NCKNC--YKCIRHCPVKSIRFSGNQAHIVGNECILCGQCFVVCPQNA 55


>gi|253991863|ref|YP_003043219.1| formate dehydrogenase-o, iron-sulfur subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783313|emb|CAQ86478.1| formate dehydrogenase-o, iron-sulfur subunit (formate
           dehydrogenase-beta subunit) (fdh-z beta subunit)
           (aerobic formate dehydrogenas iron-sulfur subunit)
           [Photorhabdus asymbiotica]
          Length = 309

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     + CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINKEDN 155



 Score = 37.8 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP +     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFNVPRINKEDNRVY----KCTLCVDRVAVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   ++  ++ 
Sbjct: 184 IHFGSKKAMKD 194


>gi|313905204|ref|ZP_07838572.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Eubacterium cellulosolvens 6]
 gi|313469957|gb|EFR65291.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Eubacterium cellulosolvens 6]
          Length = 526

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 16  DCVEVCPVDCFYEGENF----LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C + CP  C   G +       +    CI CG+C   C   AI    E
Sbjct: 404 PCQDACPKGCISTGSSITNLPFTVDNSSCIGCGMCVASCSGQAIFLVDE 452


>gi|303247146|ref|ZP_07333421.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
 gi|302491572|gb|EFL51457.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
          Length = 442

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 26/82 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPV---------------------DCFYEGENFLAIHPDECI 41
           YV  + CI C    C   CPV                     +          +   +C+
Sbjct: 105 YVDMDKCIGC--RKCEYACPVVVPDVEQGGFSGRKAIRIPFSNAI---PQKAVLDVTQCM 159

Query: 42  DCGVCEPECPVDAIKPDTEPGL 63
            CG C   CP  AI  D +P  
Sbjct: 160 LCGKCASVCPTGAIVYDQQPEA 181


>gi|257792752|ref|YP_003183358.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Eggerthella lenta DSM 2243]
 gi|257476649|gb|ACV56969.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
          lenta DSM 2243]
          Length = 393

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 7  ENCILCKHTD-----CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E C   ++ +     C + C   C    +  L +   +CI CG C   CP  A++     
Sbjct: 32 ERCAKVRNRNVACLKCADACTSGCIALVDGELRVDAAKCIGCGTCATVCPTSALEARNPS 91

Query: 62 GLEL 65
            +L
Sbjct: 92 DAQL 95



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 8   NCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
            C  C    C   CP          +G   +  +P EC+ CG C   CP +AI+   E
Sbjct: 293 ACSSC--RMCATFCPTGAIRKFDNDDGTLGVYHYPGECVKCGSCRDVCPENAIELLDE 348


>gi|164688748|ref|ZP_02212776.1| hypothetical protein CLOBAR_02395 [Clostridium bartlettii DSM
          16795]
 gi|164602224|gb|EDQ95689.1| hypothetical protein CLOBAR_02395 [Clostridium bartlettii DSM
          16795]
          Length = 589

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 1  MTYVV--TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
          M YV      C  C    C  VCPV+          I  D CI C  C   CP
Sbjct: 13 MWYVNFKKTRCKSC--YACARVCPVNAIKFKNEQAQILKDRCIVCNECSKACP 63



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 40 CIDCGVCEPECPVDAIKPDTEPGL 63
          C  C  C   CPV+AIK   E   
Sbjct: 23 CKSCYACARVCPVNAIKFKNEQAQ 46


>gi|153853438|ref|ZP_01994847.1| hypothetical protein DORLON_00836 [Dorea longicatena DSM 13814]
 gi|149754224|gb|EDM64155.1| hypothetical protein DORLON_00836 [Dorea longicatena DSM 13814]
          Length = 140

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +   C  C    C++ CPV   Y+     F+    ++CI C  CE  CP D I  D +  
Sbjct: 52  ICPGCAHCG--ICIKACPVQAIYKDPKTGFVLTDKEKCIGCHACEKVCPKDVIHFDKDGK 109

Query: 63  LEL 65
           +E 
Sbjct: 110 MEK 112


>gi|20093524|ref|NP_613371.1| Fe-S-cluster-containing hydrogenase component [Methanopyrus
          kandleri AV19]
 gi|19886362|gb|AAM01301.1| Fe-S-cluster-containing hydrogenase component [Methanopyrus
          kandleri AV19]
          Length = 175

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 7  ENCILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + CI C  +   C   CP     +    L +  D C  CG C   CPV  I 
Sbjct: 41 QKCIHCDPERAMCARACPHHAIVQVCETLVVDRDRCNGCGKCAEACPVGGIF 92


>gi|325969959|ref|YP_004246150.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324025197|gb|ADY11956.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 142

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           NC  C    CV+ C        +  + I    C+ C  C   CP  A+ P TE  ++ 
Sbjct: 57  NCRHCTEPLCVKSCIAGAITSKDGVIVIDQSRCVLCYSCIMACPYGALMPSTEGVMQK 114


>gi|319794660|ref|YP_004156300.1| NADH-quinone oxidoreductase, chain i [Variovorax paradoxus EPS]
 gi|315597123|gb|ADU38189.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus EPS]
          Length = 181

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 80  ERCIACKL--CEAVCPALAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 136



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  +++
Sbjct: 80  ERCIACKLCEAVCPALAITIESD 102


>gi|294635463|ref|ZP_06713950.1| putative oxidoreductase, Fe-S subunit [Edwardsiella tarda ATCC
           23685]
 gi|291091159|gb|EFE23720.1| putative oxidoreductase, Fe-S subunit [Edwardsiella tarda ATCC
           23685]
          Length = 208

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
            + C  C+   C++ CP+       +   +A+    CI C  C   CP
Sbjct: 120 ADTCRQCRDPACLDACPIGAIRWRADLGCIAVDQKRCIGCSACTTACP 167


>gi|261366842|ref|ZP_05979725.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
 gi|282570942|gb|EFB76477.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
          Length = 258

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           T+ C  C    C   CPV   ++ E+   +    CI C  C   CP  A
Sbjct: 184 TKACNRCGV--CAAECPVQAIHK-EDPTKVDEKACISCMRCVAVCPQGA 229



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 39  ECIDCGVCEPECPVDAIKPDTE 60
            C  CGVC  ECPV AI  +  
Sbjct: 186 ACNRCGVCAAECPVQAIHKEDP 207


>gi|255574746|ref|XP_002528281.1| rnase l inhibitor, putative [Ricinus communis]
 gi|223532318|gb|EEF34119.1| rnase l inhibitor, putative [Ricinus communis]
          Length = 591

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C + CPV      C           I  + CI CG+C  +CP +A
Sbjct: 11 VSSDRCKPKKCR-QECKKSCPVVKTGRLCIEVTPASKIAFISEELCIGCGICVKKCPFEA 69

Query: 55 IK 56
          I+
Sbjct: 70 IQ 71


>gi|219852172|ref|YP_002466604.1| ATPase RIL [Methanosphaerula palustris E1-9c]
 gi|219546431|gb|ACL16881.1| ABC transporter related [Methanosphaerula palustris E1-9c]
          Length = 589

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 7  ENC--ILCKHTDCVEVCP-----VDCFYEGE-NFLAIHPDECIDCGVCEPECPVDA 54
          E C    C  T+C+  CP      +    GE     I  + C+ CG+C  +CP DA
Sbjct: 9  ERCHPRKCG-TECIHYCPRVRTGDETIIIGESKKAEISEELCVGCGICVKKCPFDA 63


>gi|187736098|ref|YP_001878210.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426150|gb|ACD05429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 187

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 17/65 (26%)

Query: 7   ENCILCKHTDCVEVCPV-------DCFYEGE--------NFLAIHPDECIDCGVCEPECP 51
           E C+ C    C  +CP            EG             I    CI CG+CE  CP
Sbjct: 85  ERCVSC--QLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGMCEEACP 142

Query: 52  VDAIK 56
             AI 
Sbjct: 143 EQAIF 147


>gi|270308199|ref|YP_003330257.1| NADH:quinone oxidoreductase subunit 1 (chain I) [Dehalococcoides
           sp. VS]
 gi|270154091|gb|ACZ61929.1| NADH:quinone oxidoreductase subunit 1 (chain I) [Dehalococcoides
           sp. VS]
          Length = 183

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPV-D 53
           V E CI C    C   CPV         GE+       ++I    C+ CG+C   CP  +
Sbjct: 50  VKETCIACL--ACARACPVKAINMEVSRGEDRKLKVDHMSIDFGLCVFCGLCVESCPTKN 107

Query: 54  AIK 56
           AI 
Sbjct: 108 AIY 110



 Score = 37.4 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + CI C  C   CPV AI  +   G +  LK++
Sbjct: 51 KETCIACLACARACPVKAINMEVSRGEDRKLKVD 84


>gi|160878704|ref|YP_001557672.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160427370|gb|ABX40933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           phytofermentans ISDg]
          Length = 749

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPEC 50
            C  C  T C EVCP +      +     +  +  D+C+ C +C+  C
Sbjct: 301 ECCGC--TACREVCPYNAIEMKPDEEGFIYPVVDHDKCVKCMLCKKVC 346



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CP D          I   EC  C  C   CP +AI  + +P  E ++
Sbjct: 293 CPTD----------IKKIECCGCTACREVCPYNAI--EMKPDEEGFI 327


>gi|326387453|ref|ZP_08209062.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208109|gb|EGD58917.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 161

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDA+
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAEPRDDGSRRTTRYDIDMTKCIFCGFCQEACPVDAV 116



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 60 ERCIACKLCEAVCPAQAITIEAEPRDD 86


>gi|309704319|emb|CBJ03668.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli ETEC
           H10407]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|304314087|ref|YP_003849234.1| pyruvate synthase, subunit D [Methanothermobacter marburgensis
          str. Marburg]
 gi|313104161|sp|P80903|PORD_METTM RecName: Full=Pyruvate synthase subunit porD; AltName:
          Full=Pyruvate oxidoreductase delta chain; Short=POR;
          AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit
          delta
 gi|302587546|gb|ADL57921.1| pyruvate synthase, subunit D [Methanothermobacter marburgensis
          str. Marburg]
          Length = 81

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI C   +C+  CP  C    +    I  D C  CG+C  ECPV AIK + E
Sbjct: 32 DKCIDCD--NCILFCPEGCI---DKEHEIDYDYCKGCGICAEECPVKAIKMERE 80


>gi|220934170|ref|YP_002513069.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995480|gb|ACL72082.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 163

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPALAITIESEQRADGTRRTTRYDIDLFKCIFCGFCEEACPVDSI 118



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 62 ERCIACKLCEAVCPALAITIESEQRAD 88


>gi|157147326|ref|YP_001454645.1| hypothetical protein CKO_03118 [Citrobacter koseri ATCC BAA-895]
 gi|157084531|gb|ABV14209.1| hypothetical protein CKO_03118 [Citrobacter koseri ATCC BAA-895]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D  +
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPR 149



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEQCIGCGY--CIAGCPFDVPRLNPDDNRVY----KCTLCVDRVVVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 184 IHFGSKEAMK 193


>gi|78188597|ref|YP_378935.1| NrfC protein [Chlorobium chlorochromatii CaD3]
 gi|78170796|gb|ABB27892.1| NrfC protein [Chlorobium chlorochromatii CaD3]
          Length = 180

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
          +E C  C +  CV  CP    +  E     I+   C  C  C   CP DA
Sbjct: 50 SERCQHCDNAPCVTYCPTGASHYDEFGTVQINRSRCTGCKACMAACPYDA 99


>gi|114049320|ref|YP_739870.1| twin-arginine translocation pathway signal [Shewanella sp. MR-7]
 gi|113890762|gb|ABI44813.1| Twin-arginine translocation pathway signal [Shewanella sp. MR-7]
          Length = 228

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP       +    +++   +C+ C  C   CP 
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPY 142


>gi|194427467|ref|ZP_03060016.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           B171]
 gi|194414507|gb|EDX30780.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           B171]
 gi|323161207|gb|EFZ47124.1| formate dehydrogenase, beta subunit [Escherichia coli E128010]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|333001063|gb|EGK20633.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-272]
 gi|333015432|gb|EGK34771.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-227]
          Length = 180

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLPTGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  FELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTEPG 62
          +P +CI C  C   CP +A+  +T+  
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETDLP 62


>gi|320352154|ref|YP_004193493.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
 gi|320120656|gb|ADW16202.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
          Length = 669

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           E C  C    CV +CP           G     I    C  CGVC   CP  AI      
Sbjct: 600 EICSGCG--ICVPLCPYHAISMQPSDNGPR-ARIEMSACKGCGVCTSACPSGAIVLHGYE 656

Query: 62  GLELWLKINS 71
             +++ +I +
Sbjct: 657 EAQIFAQIEA 666



 Score = 37.4 bits (86), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 24/92 (26%), Gaps = 40/92 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECIDC 43
           TYV    C  C    C   CP    D F  G                    I  D CI+C
Sbjct: 237 TYVDWNKCTGCGD--CASKCPAKTPDEFNAGLSDRRAAFIMFPQAVPKKAVIDIDHCINC 294

Query: 44  GV--------------------CEPECPVDAI 55
                                 CE  CP +AI
Sbjct: 295 AGREIGTQPKSNQKTGRPILAPCERACPAEAI 326



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIK-PDTEPGLELWLKINS 71
            +H + C  CG+C P CP  AI    ++ G    +++++
Sbjct: 596 EVHQEICSGCGICVPLCPYHAISMQPSDNGPRARIEMSA 634


>gi|312137197|ref|YP_004004534.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224916|gb|ADP77772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 341

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 12/66 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI CK   C  VCP                    + I  D+CI CGVCE  CP  AI+
Sbjct: 105 EKCIYCK--SCEIVCPQGAITITRELPERSELVTGEIEIDKDKCIFCGVCEEMCPAAAIE 162

Query: 57  PDTEPG 62
            + +  
Sbjct: 163 IEWKEP 168



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C  C    CVEVCP +           E    L I    C+ CG CE  CP DAIK
Sbjct: 261 ELCQGC--ATCVEVCPCNALSFPKPSKPGEKPQKLHIEEKFCVYCGACEKACPTDAIK 316



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 9   CILCKHTDCVEVCPVDCFY----------------EGENFLAIHPDECIDCGVCEPECPV 52
           C+ C    C  VCPV+                   E +    I  + C++CG C+  CPV
Sbjct: 186 CVYC--MICKRVCPVNAIKVICKVCPYGEYEIKEPEIKGSTYIDSELCVNCGWCQETCPV 243

Query: 53  DAIKPDTEPGLELWLKINSEYATQWPNITTKKE 85
           DAIK +     E  ++IN E             
Sbjct: 244 DAIKIEKP--FEGTVEINEELCQGCATCVEVCP 274



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           TY+ +E C+ C    C E CPVD        E  + I+ + C  C  C   CP +A+   
Sbjct: 224 TYIDSELCVNCGW--CQETCPVDAIKIEKPFEGTVEINEELCQGCATCVEVCPCNALSFP 281

Query: 59  TE 60
             
Sbjct: 282 KP 283



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDA 54
          E C +C    C ++CPV+             E  + L +  D+C+ CG+C   CP DA
Sbjct: 22 EKCNVCGL--CEKICPVNAIEVSPPGAVVREENISKLILDEDKCVLCGMCSSICPYDA 77



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 13/61 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPD----------ECIDCGVCEPECPVDAI 55
           + CI C    C E+CP      E +   +I P           +C+ C +C+  CPV+AI
Sbjct: 144 DKCIFCGV--CEEMCPAAAIEIEWKEPTSIDPSTANDIRVDEKKCVYCMICKRVCPVNAI 201

Query: 56  K 56
           K
Sbjct: 202 K 202



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 17/64 (26%)

Query: 7   ENCILCKHTDCVEVCPVDC---------FYEGENF------LAIHPDECIDCGVCEPECP 51
           + C+LC    C  +CP D            +   +        I  ++CI C  CE  CP
Sbjct: 61  DKCVLCG--MCSSICPYDALDLQIDKKSIKDIPEYPTLIKSSEIDEEKCIYCKSCEIVCP 118

Query: 52  VDAI 55
             AI
Sbjct: 119 QGAI 122


>gi|303229944|ref|ZP_07316718.1| putative ferredoxin [Veillonella atypica ACS-134-V-Col7a]
 gi|302515310|gb|EFL57278.1| putative ferredoxin [Veillonella atypica ACS-134-V-Col7a]
          Length = 67

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + C+ C    C E CPV C  EG     I    CI CG C   CPV A++
Sbjct: 8  IDDTCVKCG--ACAEDCPVQCITEGATKFIIG-SGCISCGDCYSICPVGAVQ 56


>gi|288575165|ref|ZP_06393522.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570906|gb|EFC92463.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 620

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 9   CILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           CI C    C+    CP   + +      +    C++CGVC   CP  AI P+
Sbjct: 567 CIGCG--ICIRDFNCPGLVWDQATGKAMVDDRYCVNCGVCVAVCPKGAIVPE 616


>gi|224539362|ref|ZP_03679901.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519023|gb|EEF88128.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 285

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDE---CIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV+VCP     + +       D    CI CG C   CP  +I     P  +
Sbjct: 11 ACTQCG--KCVKVCPSGVLLKLDRGSVPQVDNIGFCIGCGHCAAVCPNGSIVHSLFPKEK 68


>gi|254361779|ref|ZP_04977914.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261494020|ref|ZP_05990523.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496221|ref|ZP_05992627.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093314|gb|EDN74310.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261308173|gb|EEY09470.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310186|gb|EEY11386.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 764

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDC-------FYEGENF---LAIHPDECIDCGVCEPECP 51
           +CI C  + C + CPV         F   E+       H D CI+CGVC   CP
Sbjct: 384 SCIRC--SSCSDACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP 435


>gi|281356043|ref|ZP_06242536.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC
          BAA-548]
 gi|281317412|gb|EFB01433.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC
          BAA-548]
          Length = 572

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 6  TEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDT 59
          TEN C  C    C+  CP       +    +  D C+ CG+C   CP  A  I+PD 
Sbjct: 10 TENICHDC--YKCIRHCPCKAIRIVDGRAGVIQDLCVACGMCVKVCPAHAKKIRPDL 64


>gi|330831550|ref|YP_004394502.1| cytochrome c oxidase accessory protein CcoG [Aeromonas veronii
           B565]
 gi|328806686|gb|AEB51885.1| Cytochrome c oxidase accessory protein CcoG [Aeromonas veronii
           B565]
          Length = 483

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 278 DCIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACVDAC 313



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P       CIDC +C   CP
Sbjct: 231 CIHMCPYARFQSAMFDKDTFIVGYDTKRGETRGARSRKADPKAMGLGDCIDCDLCVQVCP 290

Query: 52  VD 53
             
Sbjct: 291 TG 292


>gi|324115610|gb|EGC09548.1| formate dehydrogenase [Escherichia coli E1167]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|290559230|gb|EFD92577.1| ABC transporter related protein [Candidatus Parvarchaeum
          acidophilus ARMAN-5]
          Length = 482

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 15/59 (25%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA---------IHPDECIDCGVCEPECPVDAIK 56
          +NC       C EVCP     EG              I    CI CG+C   CP DAIK
Sbjct: 15 DNCNDI----CAEVCPR--VREGAKETVYARENGQAAITESLCISCGICVKRCPFDAIK 67


>gi|163746329|ref|ZP_02153687.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380214|gb|EDQ04625.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 535

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +CI C    CV VCP+     EG+        ECI C +C   C     K     GL
Sbjct: 286 VLGDCIDCN--ACVAVCPMGIDIREGQQM------ECITCALCIDACDDVMAKIGRPRGL 337

Query: 64  ELWLKINSE 72
             +L ++ E
Sbjct: 338 IDYLALDDE 346


>gi|156089325|ref|XP_001612069.1| ABC transporter, ATP-binding domain containing protein [Babesia
          bovis]
 gi|154799323|gb|EDO08501.1| ABC transporter, ATP-binding domain containing protein [Babesia
          bovis]
          Length = 616

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPV-----DCFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C   CPV      C           I    CI CG+C  +CP +A
Sbjct: 25 VSTDKCKPKKCR-QECKRNCPVAKAGKQCIIADPTSKIAFISETLCIGCGICVKKCPFEA 83

Query: 55 I 55
          I
Sbjct: 84 I 84


>gi|145297213|ref|YP_001140054.1| FixG-related protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142849985|gb|ABO88306.1| FixG-related protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 483

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 278 DCIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACVDAC 313



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P       CIDC +C   CP
Sbjct: 231 CIHMCPYARFQSAMFDKDTFIVGYDTKRGETRGARSRKADPKALGLGDCIDCDLCVQVCP 290

Query: 52  VD 53
             
Sbjct: 291 TG 292


>gi|124023993|ref|YP_001018300.1| Fe-S-cluster-containing hydrogenase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964279|gb|ABM79035.1| Fe-S-cluster-containing hydrogenase components 2 [Prochlorococcus
           marinus str. MIT 9303]
          Length = 323

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPGLELW 66
           C       C   CP +   E G   L+     C  CG C P CP+  I + D    L  +
Sbjct: 81  CPSDCARPCQHACPAEAIGEQGGVQLS----RCYGCGRCLPTCPLGLIDEHDRRLELRDF 136

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMD 94
             +    A   P+      +   A   +
Sbjct: 137 GPL---LAELHPDAVEIHTAPGRAKAFE 161


>gi|123142348|sp|Q0QLF7|HNR_EUBBA RecName: Full=6-hydroxynicotinate reductase
 gi|86278261|gb|ABC88393.1| 6-hydroxynicotinate reductase [Eubacterium barkeri]
          Length = 499

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 7  ENCILCKHTDCVEVCPVDC-FYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
          E C  C    CV+ CPV   +YE ++  AI    ++C++CG+C+  C   AI+ D    
Sbjct: 7  EKCKKC--RMCVKECPVHAVYYEKKDKGAIVEITEKCVECGICKRVCKFGAIENDAPLE 63



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             I  ++C  C +C  ECPV A+  + + 
Sbjct: 1  MFKIDEEKCKKCRMCVKECPVHAVYYEKKD 30


>gi|90413770|ref|ZP_01221758.1| Putative FixG-related protein [Photobacterium profundum 3TCK]
 gi|90325239|gb|EAS41736.1| Putative FixG-related protein [Photobacterium profundum 3TCK]
          Length = 476

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACVDAC 308



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P       CIDC +C   CP
Sbjct: 226 CIHMCPYARFQSAMFDKDTYIVGYNEERGEARGPRSRKKDPKALGLGDCIDCDLCVQVCP 285

Query: 52  VD 53
             
Sbjct: 286 TG 287


>gi|63029706|gb|AAY27748.1| perchlorate reductase B [Dechloromonas agitata]
          Length = 333

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPV 52
           + V   C  C    C+E CP +  Y  E +  + IH ++C     C   CP 
Sbjct: 131 FYVPRMCNHCAKPACLEACPNEAIYKREQDGLVVIHQEKCKGAQACIQSCPY 182


>gi|54310626|ref|YP_131646.1| putative FixG-related protein [Photobacterium profundum SS9]
 gi|46915069|emb|CAG21844.1| Putative FixG-related protein [Photobacterium profundum SS9]
          Length = 476

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACVDAC 308



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 17/62 (27%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P E     CIDC +C   CP
Sbjct: 226 CIHMCPYARFQSAMFDKDTYIVGYNEERGEARGPRSRKKDPKELGLGDCIDCDLCVQVCP 285

Query: 52  VD 53
             
Sbjct: 286 TG 287


>gi|33863997|ref|NP_895557.1| hypothetical protein PMT1730 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635581|emb|CAE21905.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 323

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 9/88 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI-KPDTEPGLELW 66
           C       C   CP +   E G   L+     C  CG C P CP+  I + D    L+ +
Sbjct: 81  CPSDCSRPCQHSCPAEAIGEQGGVQLS----RCYGCGRCLPTCPLGLIDEHDRRLELKDF 136

Query: 67  LKINSEYATQWPNITTKKESLPSAAKMD 94
             +    A   P+      +   A   +
Sbjct: 137 GPL---LAELHPDAVEIHTAPGRAEAFE 161


>gi|330507229|ref|YP_004383657.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanosaeta concilii GP-6]
 gi|328928037|gb|AEB67839.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanosaeta concilii GP-6]
          Length = 583

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 1   MTYVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           M  ++ E C  C+   C+ + CP       +  + I+   C  CG+CE  CP  AI
Sbjct: 526 MRTILAEECRACEL--CLSLGCP--AIEGVDGVMKINQTLCAGCGLCEQICPAGAI 577


>gi|330004630|ref|ZP_08304997.1| formate dehydrogenase, beta subunit [Klebsiella sp. MS 92-3]
 gi|328536545|gb|EGF62879.1| formate dehydrogenase, beta subunit [Klebsiella sp. MS 92-3]
          Length = 276

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP D  + + E  
Sbjct: 74  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDVPRLNPEDN 131



 Score = 37.4 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 106 SEQCIGCGY--CIAGCPFDVPRLNPEDNRVY----KCTLCVDRVTVGQEPACVKTCPTGA 159

Query: 55  IKPDTEPGLE 64
           I   ++  ++
Sbjct: 160 IHFGSKEDMK 169


>gi|303244238|ref|ZP_07330575.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanothermococcus okinawensis IH1]
 gi|302485365|gb|EFL48292.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Methanothermococcus okinawensis IH1]
          Length = 85

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + C++C+  +C   CP  C  E +    I  D C  C +C  ECPV+AI
Sbjct: 32 DKCVMCE--NCFIFCPEGCIKEKDGKFEIDYDYCKGCLICVEECPVNAI 78


>gi|288958981|ref|YP_003449322.1| NADH dehydrogenase I chain I [Azospirillum sp. B510]
 gi|288911289|dbj|BAI72778.1| NADH dehydrogenase I chain I [Azospirillum sp. B510]
          Length = 162

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG+C+  CPVDA+
Sbjct: 61  ERCIACKL--CEAVCPALAITIEAEPRDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAV 117



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 61 ERCIACKLCEAVCPALAITIEAEPRDD 87


>gi|187779124|ref|ZP_02995597.1| hypothetical protein CLOSPO_02719 [Clostridium sporogenes ATCC
           15579]
 gi|187772749|gb|EDU36551.1| hypothetical protein CLOSPO_02719 [Clostridium sporogenes ATCC
           15579]
          Length = 278

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + CI C   +C  VC  D          I P  C  CG C   C  +AIK + E   + +
Sbjct: 62  DICIKC--MECESVCKFDAIKN----FKIDPFLCEGCGACTLICLQNAIKLEDEKTAKTF 115

Query: 67  L 67
           +
Sbjct: 116 I 116



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 13/28 (46%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G     I  D CI C  CE  C  DAIK
Sbjct: 53 GGKKANIDEDICIKCMECESVCKFDAIK 80


>gi|167622243|ref|YP_001672537.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352265|gb|ABZ74878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 227

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C  T CV+VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 95  SCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQ 142


>gi|125534698|gb|EAY81246.1| hypothetical protein OsI_36424 [Oryza sativa Indica Group]
          Length = 474

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C                    I  + CI CG+C  +CP 
Sbjct: 10 IVSED--KCKPKKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          DAI+
Sbjct: 68 DAIE 71


>gi|94263620|ref|ZP_01287430.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93456040|gb|EAT06191.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 684

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C  CK   C  +CP       E      I+   C  CG C   CP+ AI
Sbjct: 619 CTGCK--ICQNICPYRAIGFDEEKQVAVINRVLCRGCGTCAAACPLTAI 665



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-CFYEG--------------ENFLAIHPDECI------ 41
           +V    CI C   +C+E CP +    EG               N   I P  C+      
Sbjct: 239 FVDLGRCIGCG--ECIEACPAESVGTEGGRCKAIDFAVPGALPNVPKIDPGLCLRGGSDP 296

Query: 42  DCGVCEPECPVD 53
           +C +C+  CP+ 
Sbjct: 297 ECRLCQTACPMG 308


>gi|20428818|emb|CAD21693.1| NADH dependant phenylglyoxylate [Azoarcus evansii]
          Length = 446

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP     +      I     +C+DC +C   C    I  D 
Sbjct: 58  CRQCADPKCVTVCPAGALNKDGTSGVIGWDATKCVDCLLCTVGCAYAGIALDE 110


>gi|73670960|ref|YP_306975.1| carbon-monoxide dehydrogenase, Fe-S subunit [Methanosarcina barkeri
           str. Fusaro]
 gi|72398122|gb|AAZ72395.1| carbon-monoxide dehydrogenase, Fe-S subunit [Methanosarcina barkeri
           str. Fusaro]
          Length = 165

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPEC 50
           C  C+   CV VCP     + EN   ++  P+ C+DC +C   C
Sbjct: 57  CRHCEDAPCVSVCPTKAICQDENASIVSYDPNLCVDCWLCSMVC 100


>gi|89894977|ref|YP_518464.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89334425|dbj|BAE84020.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 224

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +C  C    C+ VCPV  +   + +  +A +  +C+ C  C   CP  A + 
Sbjct: 100 SCNHCADPACMAVCPVKAYTKRDKDGIVAHNTKKCVGCAYCLYACPYHAPQF 151


>gi|148545776|ref|YP_001265878.1| formate dehydrogenase subunit beta [Pseudomonas putida F1]
 gi|148509834|gb|ABQ76694.1| formate dehydrogenase beta subunit [Pseudomonas putida F1]
          Length = 316

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 94  DGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|117922393|ref|YP_871585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614725|gb|ABK50179.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 228

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP       +    +++   +C+ C  C   CP 
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPY 142


>gi|116750707|ref|YP_847394.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699771|gb|ABK18959.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 174

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   CV VCP     +      + + P  C+ C  C   CP  A +
Sbjct: 58  PCFHCEVPWCVPVCPTGAMRKRPFDGIVYVEPSLCVGCKRCISACPWGAPQ 108


>gi|329898085|ref|ZP_08272294.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
 gi|328920957|gb|EGG28382.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
          Length = 574

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 12/56 (21%)

Query: 6   TENCILCKHTDCVEVCPVDC-------FYEGENFLAIHP---DECIDCGVCEPECP 51
           ++ CI C H  C +VCP          + + +N   +      +CI+CG C   CP
Sbjct: 363 SQPCIRCGH--CADVCPASLLPQQLYWYAKSQNHEQLDAHNLADCIECGACAYVCP 416


>gi|301303365|ref|ZP_07209489.1| formate dehydrogenase, beta subunit [Escherichia coli MS 124-1]
 gi|300841319|gb|EFK69079.1| formate dehydrogenase, beta subunit [Escherichia coli MS 124-1]
 gi|315254260|gb|EFU34228.1| formate dehydrogenase, beta subunit [Escherichia coli MS 85-1]
 gi|323189685|gb|EFZ74964.1| formate dehydrogenase, beta subunit [Escherichia coli RN587/1]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D I         
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD-IPRLNPEDNR 156

Query: 65  LW 66
           ++
Sbjct: 157 VY 158


>gi|268611546|ref|ZP_06145273.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus flavefaciens FD-1]
          Length = 576

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C+ C    C+++ CP       +    I   +C+ CG+C+ +C + AI
Sbjct: 527 VDADKCVGCG--MCMKLGCP--AISMRDGRAVIDHTQCVGCGICQEQCKIGAI 575


>gi|260223136|emb|CBA33398.1| NADH-quinone oxidoreductase subunit I [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 146

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 45  ERCIACKL--CEAVCPAMAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 101



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 45 ERCIACKLCEAVCPAMAITIESD 67


>gi|222445863|ref|ZP_03608378.1| hypothetical protein METSMIALI_01507 [Methanobrevibacter smithii
          DSM 2375]
 gi|288869567|ref|ZP_05975009.2| ferredoxin 2 [Methanobrevibacter smithii DSM 2374]
 gi|222435428|gb|EEE42593.1| hypothetical protein METSMIALI_01507 [Methanobrevibacter smithii
          DSM 2375]
 gi|288861550|gb|EFC93848.1| ferredoxin 2 [Methanobrevibacter smithii DSM 2374]
          Length = 58

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          E C +C+   C++VCP +   +    + I+ ++C DCG C   CPV AI  +
Sbjct: 9  EECGVCED--CIDVCPEEAIIKKAFKVEINENKCDDCGECVDICPVGAIYDE 58


>gi|229816263|ref|ZP_04446572.1| hypothetical protein COLINT_03314 [Collinsella intestinalis DSM
           13280]
 gi|229808114|gb|EEP43907.1| hypothetical protein COLINT_03314 [Collinsella intestinalis DSM
           13280]
          Length = 255

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
            C +C    C   CP       E+    + P++C+ CG C   CP
Sbjct: 142 ACHMCTTALCQTSCPHAAIVTLEDGTRTVDPEKCVGCGTCVAACP 186



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 4   VVTENCILCKHTDCVEVCP-VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V  E C+ C    CV  CP        E   +    +C+ CG C  +CP  A++
Sbjct: 170 VDPEKCVGCG--TCVAACPWHMPVVNTETHKS---TKCVACGRCAEQCPNGALE 218


>gi|220933525|ref|YP_002512424.1| putative iron-sulfur cluster-binding protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994835|gb|ACL71437.1| putative iron-sulfur cluster-binding protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 243

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           +C+ C+   CV VCP    +   E+ +  +  D+CI C  C   CP    + D 
Sbjct: 72  SCLHCEEPPCVPVCPTGASYKRPEDGIVLVDYDKCIGCKYCSWACPYGVREIDE 125


>gi|157376826|ref|YP_001475426.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319200|gb|ABV38298.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 481

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDAC 308



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC +C   CP  
Sbjct: 274 CIDCNLCVDVCPTG 287


>gi|150402148|ref|YP_001329442.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C7]
 gi|150033178|gb|ABR65291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C7]
          Length = 154

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C+ C      C +VCPV+   E +  L +  + CI C +C   CP+ A
Sbjct: 41 CLQCHPDKAPCKQVCPVNAIEELDGALVVDEESCILCRLCMIACPIGA 88


>gi|124267660|ref|YP_001021664.1| putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124260435|gb|ABM95429.1| putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 494

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP      EG  +      ECI C  C   C
Sbjct: 282 DCIDC--TLCVQVCPTGIDIREGLQY------ECIGCAACIDVC 317


>gi|13539225|emb|CAC35759.1| putative iron-sulfur protein (PscB) [Chlorobium phaeovibrioides]
          Length = 232

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  ++           EG     I  D CI C  C    EC
Sbjct: 137 FIIENLCVGCGL--CLDKCPPKINAIGYKFYGDVQEGGFRCYIDQDACISCSACFSGDEC 194

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 195 PSGALIEQLPDGE 207


>gi|39996453|ref|NP_952404.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39983333|gb|AAR34727.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
          Length = 322

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            ++CI C    C + C  D    G+N   L I P  C+ CG C   CP +A
Sbjct: 169 ADHCIGCGL--CAKSCTEDAIAMGDNGKPLFI-PANCLYCGDCLKVCPTEA 216



 Score = 40.5 bits (94), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 11  LCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
                 C   CP     D  ++G  +  +  D CI CG+C   C  DAI      G  L+
Sbjct: 139 KVGFAGCPFDCPKSATNDVGFQGAVWPVLSADHCIGCGLCAKSCTEDAIAMGDN-GKPLF 197

Query: 67  LKINSEY 73
           +  N  Y
Sbjct: 198 IPANCLY 204


>gi|33592015|ref|NP_879659.1| NADH dehydrogenase subunit I [Bordetella pertussis Tohama I]
 gi|33602808|ref|NP_890368.1| NADH dehydrogenase subunit I [Bordetella bronchiseptica RB50]
 gi|81425357|sp|Q7VZP7|NUOI_BORPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81429893|sp|Q7WCU7|NUOI_BORBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|158958056|sp|Q7W5B5|NUOI_BORPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|33571659|emb|CAE41152.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella pertussis
           Tohama I]
 gi|33577250|emb|CAE35807.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella bronchiseptica
           RB50]
 gi|332381431|gb|AEE66278.1| NADH dehydrogenase subunit I [Bordetella pertussis CS]
          Length = 162

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESEQRDDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRDD 87


>gi|325288696|ref|YP_004264877.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964097|gb|ADY54876.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 288

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
           + C  C    C  VCP       +    L ++   C DCG C   CPV+A
Sbjct: 164 DKCNFCGL--CEAVCPEKSIRLDQENRKLELNTRTCNDCGRCVKVCPVEA 211



 Score = 34.7 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           D+C  CG+CE  CP  +I+ D E      L++N
Sbjct: 164 DKCNFCGLCEAVCPEKSIRLDQE---NRKLELN 193


>gi|317126172|ref|YP_004100284.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Intrasporangium calvum DSM 43043]
 gi|315590260|gb|ADU49557.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Intrasporangium calvum DSM 43043]
          Length = 586

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           NC  C    C   CP D   +         +  +C  CG C  +CPV AI+  +E   +
Sbjct: 492 NCFECDG--CFGSCPEDAIIKLGKGKRYEFNYAKCTGCGTCYRQCPVHAIEMVSESQFD 548


>gi|304317220|ref|YP_003852365.1| PAS/PAC sensor protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778722|gb|ADL69281.1| putative PAS/PAC sensor protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 572

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          NC  C    C+  CPV           I    CI CG C   CP +A
Sbjct: 10 NCRNC--YKCIRYCPVKAIKVNNEQAEIVDYMCIACGRCLNVCPQNA 54


>gi|289829692|ref|ZP_06547233.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-3139]
          Length = 132

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 7  ENCILCKHTDCVEVCPVDCF-------YEG---ENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C+ C    C   CPV C         +G     F  I+   CI CG+CE  CP  AI+
Sbjct: 10 ERCVACNL--CAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQ 67

Query: 57 PDTEPGLELW 66
             +  L  +
Sbjct: 68 LTPDFELGEY 77


>gi|237654368|ref|YP_002890682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237625615|gb|ACR02305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 710

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE--PGLELWLK-INSE 72
           +C+E C         + +A+ P  C  CG C   CP  A+       P L   +K + +E
Sbjct: 334 NCIESCSTAAIRSNGDVIAVDPYLCKGCGTCSTVCPSGALSFQYPRVPELGQRVKTLLAE 393

Query: 73  YAT 75
           YA 
Sbjct: 394 YAR 396



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPD 58
           ++ C LC    C   CP        +   L      C+ CG+CE  CP  AI  +
Sbjct: 571 SDACTLC--MSCTGACPAGALRAASDAYRLEFVEKNCLQCGLCEASCPESAITLE 623



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  + C+ C  C   CP  AI  D +  
Sbjct: 204 IDLELCVRCNACVKACPEGAIGWDLQVD 231



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           E C+ C    CV+ CP          L +  D C   G C   C
Sbjct: 207 ELCVRCN--ACVKACPEGAIGWD---LQVDVDACRSHGACVAAC 245



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            I  D C  C  C   CP  A++  ++     +++ N
Sbjct: 568 VIASDACTLCMSCTGACPAGALRAASDAYRLEFVEKN 604


>gi|150401635|ref|YP_001325401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014338|gb|ABR56789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 655

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 20/82 (24%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV    C  C    C  VCP++   E                        I  + CIDC 
Sbjct: 240 YVSESACTGCG--ACAAVCPIEVPNEFDCGLGMRKAIYAPFPQAVPLVYTIDKEHCIDCK 297

Query: 45  VCEPECPVDAIKPDTEPGLELW 66
           +C+  C  DAI  + +P    +
Sbjct: 298 LCDKACGPDAIDYNQQPEEIKF 319



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           VV E+ C  C    C  +CP +      +   +    C  CG C   CP  A
Sbjct: 578 VVNEDVCGACG--ICAPLCPYNAIKYENDLAVVDDIACKGCGSCAGACPSGA 627



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + ++ D C  CG+C P CP +AIK + +
Sbjct: 577 VVVNEDVCGACGICAPLCPYNAIKYEND 604


>gi|197117834|ref|YP_002138261.1| polyferredoxin benzoyl-CoA reductase electron transfer protein
            [Geobacter bemidjiensis Bem]
 gi|197087194|gb|ACH38465.1| polyferredoxin, putative benzoyl-CoA reductase electron transfer
            protein [Geobacter bemidjiensis Bem]
          Length = 1012

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 4    VVTENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            V   NC+ C    C+  C                 + P  C   G+C  +CP  AI    
Sbjct: 940  VNENNCVSCG--ACITACKYGAISFVDTPKGKKAHVEPILCKGDGLCNAKCPTQAIYLKH 997

Query: 60   EPGLELWLKINSEY 73
                 ++ +I++  
Sbjct: 998  YTDDAIFAQIDAAL 1011



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 25/83 (30%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYE--GENF-------------LAIHPDECI--- 41
           Y+  E C  C    CV+ CPV   D F +   EN                + P+ C+   
Sbjct: 105 YISEEKCTGCN--ICVDYCPVKIPDPFNQNLSENKAVHIYFSQAVPLVTYVDPETCLYLK 162

Query: 42  --DCGVCEPECPVDAIKPDTEPG 62
              C +C   C  +AI    +P 
Sbjct: 163 EGKCQICVGACKTNAIDLHQKPE 185


>gi|219669379|ref|YP_002459814.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219539639|gb|ACL21378.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 224

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           +C  C    C+ VCPV  +   + +  +A +  +C+ C  C   CP  A + 
Sbjct: 100 SCNHCADPACMAVCPVKAYTKRDKDGIVAHNTKKCVGCAYCLYACPYHAPQF 151


>gi|113972090|ref|YP_735883.1| twin-arginine translocation pathway signal [Shewanella sp. MR-4]
 gi|113886774|gb|ABI40826.1| Twin-arginine translocation pathway signal [Shewanella sp. MR-4]
          Length = 228

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP       +    +++   +C+ C  C   CP 
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVDAWKCVGCQYCIAACPY 142


>gi|22127947|ref|NP_671370.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis KIM
           10]
 gi|45443694|ref|NP_995233.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51598213|ref|YP_072404.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809019|ref|YP_652935.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Antiqua]
 gi|108813864|ref|YP_649631.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Nepal516]
 gi|145597360|ref|YP_001161435.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Pestoides F]
 gi|150261000|ref|ZP_01917728.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           CA88-4125]
 gi|153948809|ref|YP_001403061.1| aerobic formate dehydrogenase, iron-sulfur subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|162420916|ref|YP_001608080.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Angola]
 gi|165926134|ref|ZP_02221966.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936933|ref|ZP_02225499.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009476|ref|ZP_02230374.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213345|ref|ZP_02239380.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399250|ref|ZP_02304774.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420862|ref|ZP_02312615.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167425543|ref|ZP_02317296.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|170022301|ref|YP_001718806.1| formate dehydrogenase subunit beta [Yersinia pseudotuberculosis
           YPIII]
 gi|186897442|ref|YP_001874554.1| formate dehydrogenase subunit beta [Yersinia pseudotuberculosis
           PB1/+]
 gi|218931041|ref|YP_002348916.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis CO92]
 gi|229839763|ref|ZP_04459922.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229841847|ref|ZP_04462003.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229896725|ref|ZP_04511889.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Pestoides A]
 gi|229904384|ref|ZP_04519495.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Nepal516]
 gi|270488326|ref|ZP_06205400.1| formate dehydrogenase, beta subunit [Yersinia pestis KIM D27]
 gi|294505588|ref|YP_003569650.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Z176003]
 gi|21961089|gb|AAM87621.1|AE014009_3 formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis KIM
           10]
 gi|45438564|gb|AAS64110.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51591495|emb|CAH23166.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777512|gb|ABG20031.1| formate dehydrogenase beta subunit [Yersinia pestis Nepal516]
 gi|108780932|gb|ABG14990.1| formate dehydrogenase beta subunit [Yersinia pestis Antiqua]
 gi|115349652|emb|CAL22631.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis CO92]
 gi|145209056|gb|ABP38463.1| formate dehydrogenase beta subunit [Yersinia pestis Pestoides F]
 gi|149290408|gb|EDM40485.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           CA88-4125]
 gi|152960304|gb|ABS47765.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pseudotuberculosis IP 31758]
 gi|162353731|gb|ABX87679.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis Angola]
 gi|165915175|gb|EDR33786.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921994|gb|EDR39171.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991398|gb|EDR43699.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205643|gb|EDR50123.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960991|gb|EDR57012.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051754|gb|EDR63162.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055557|gb|EDR65350.1| putative aerobic formate dehydrogenase, iron-sulfur subunit
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169748835|gb|ACA66353.1| formate dehydrogenase, beta subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186700468|gb|ACC91097.1| formate dehydrogenase, beta subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678502|gb|EEO74607.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Nepal516]
 gi|229691186|gb|EEO83239.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696129|gb|EEO86176.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700264|gb|EEO88299.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Pestoides A]
 gi|262363753|gb|ACY60474.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           D106004]
 gi|262367688|gb|ACY64245.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           D182038]
 gi|270336830|gb|EFA47607.1| formate dehydrogenase, beta subunit [Yersinia pestis KIM D27]
 gi|294356047|gb|ADE66388.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           Z176003]
 gi|320017385|gb|ADW00957.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 323

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKESMKE 196


>gi|316965841|gb|EFV50509.1| putative ABC transporter, ATP-binding protein [Trichinella
          spiralis]
          Length = 610

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C    C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 21 VNNDRCKPKNCG-QVCKKSCPVVRMGKLCIEVTPSSKIAFISESLCIGCGICVKKCPYDA 79

Query: 55 I 55
          I
Sbjct: 80 I 80


>gi|303258425|ref|ZP_07344428.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|330999910|ref|ZP_08323609.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
 gi|302858871|gb|EFL81959.1| protein NrfC [Burkholderiales bacterium 1_1_47]
 gi|329573428|gb|EGG55037.1| thiosulfate reductase electron transport protein phsb
           [Parasutterella excrementihominis YIT 11859]
          Length = 222

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA--IKPDTEPGL 63
           +C  C    CV VCP          N + +    C+ C  C   CP +   I  +T+   
Sbjct: 92  SCQQCSEPPCVRVCPTGAAHIDPATNIVTMDNSRCVGCKYCIAGCPYNVRFINEETKAAE 151


>gi|294496342|ref|YP_003542835.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalophilus mahii DSM 5219]
 gi|292667341|gb|ADE37190.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 451

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 12/57 (21%)

Query: 5   VTENCILCKHTDCVEVCPVDCF--------YEG--ENFLAIHPDECIDCGVCEPECP 51
           ++++CI C    CV+VCPVD           +G  +    +H + CI+CG C   CP
Sbjct: 357 ISKDCIHC--ARCVDVCPVDLIPNRIAALSNQGRFDECRQMHIENCIECGRCSSVCP 411


>gi|282849346|ref|ZP_06258731.1| putative ferredoxin [Veillonella parvula ATCC 17745]
 gi|282581050|gb|EFB86448.1| putative ferredoxin [Veillonella parvula ATCC 17745]
          Length = 65

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + + C+ C    C E CPV C  EG+    I    CI CG C   CPV A+K
Sbjct: 8  IDDTCVKCG--ACAEDCPVQCITEGKTQFIIGKG-CIGCGDCYSICPVGAVK 56


>gi|237751862|ref|ZP_04582342.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376745|gb|EEO26836.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 408

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           V    C LC    CV  C V+  +   +   L  +   C  CG C   CP + I+   E 
Sbjct: 279 VDASKCTLCL--SCVGACNVNAIFARSDDFSLRFNASLCTTCGYCVTSCPENVIELSREG 336

Query: 62  GLELWLKINSEYAT 75
                + +N+ Y  
Sbjct: 337 -----IALNAGYFK 345



 Score = 42.8 bits (100), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 15  TDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEP--GLELWLK 68
             C EVCP   F  G N     LA    +CI+CG C   CP + ++ +  P  GLE  ++
Sbjct: 69  AKCAEVCPT--FGVGSNDSLMELAFSMVDCINCGACVGVCPTNCLEYEELPKEGLEEIIE 126

Query: 69  I 69
           +
Sbjct: 127 L 127


>gi|229586000|ref|YP_002844502.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.27]
 gi|238620985|ref|YP_002915811.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.4]
 gi|228021050|gb|ACP56457.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.27]
 gi|238382055|gb|ACR43143.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Sulfolobus islandicus M.16.4]
          Length = 94

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          NCI CK   C   CP          + +  + C  CGVC   CPV AI
Sbjct: 43 NCIGCK--ACFMFCPESTIVPSNGKVRVDYEYCKGCGVCANVCPVKAI 88


>gi|218670705|ref|ZP_03520376.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           GR56]
          Length = 141

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 9   CILCKHTDCVEVCPVDCF----YEGEN------FLAIHPDECIDCGVCEPECPVDAI 55
           C+ C+   C  +CP DC     YE E          I    C+ CG+CE  CP DAI
Sbjct: 68  CVACEL--CARICPCDCIEVVPYEDEKGNRHPAKFEIDTARCLFCGLCEDACPADAI 122


>gi|254472883|ref|ZP_05086282.1| radical activating enzyme [Pseudovibrio sp. JE062]
 gi|211958347|gb|EEA93548.1| radical activating enzyme [Pseudovibrio sp. JE062]
          Length = 272

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV  CP       +  +   P  C  C  C   CP++A
Sbjct: 31 CNDCGD--CVPECPTGALTIVQGKVVHDPSICDQCDKCLDVCPINA 74


>gi|160331512|ref|XP_001712463.1| rli1 [Hemiselmis andersenii]
 gi|159765911|gb|ABW98138.1| rli1 [Hemiselmis andersenii]
          Length = 599

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 11 LCKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CK + C   C  +C               EN   I  + CI CG+C  +CP  AI
Sbjct: 15 KCKPSKCKFECKKNCPIVRTGKFCIQIDFSENKAKISEELCIGCGICIKKCPFGAI 70


>gi|82778934|ref|YP_405283.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella dysenteriae
           Sd197]
 gi|309783817|ref|ZP_07678462.1| formate dehydrogenase, beta subunit [Shigella dysenteriae 1617]
 gi|81243082|gb|ABB63792.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella dysenteriae
           Sd197]
 gi|308928188|gb|EFP73650.1| formate dehydrogenase, beta subunit [Shigella dysenteriae 1617]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D I         
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD-IPRLNPEDNR 156

Query: 65  LW 66
           ++
Sbjct: 157 VY 158


>gi|78188921|ref|YP_379259.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
 gi|78171120|gb|ABB28216.1| polysulfide reductase, subunit B, putative [Chlorobium
           chlorochromatii CaD3]
          Length = 199

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
           C+ C++T C+  CP    ++ ++ +  ++ D CI C  C   CP DA       D E   
Sbjct: 60  CMHCENTPCMSACPTGATWKNKDGVILVNYDRCIGCYACCIACPYDARYAYNNHDVEEAE 119

Query: 64  ELWLKI 69
           +L+ K+
Sbjct: 120 KLYGKL 125


>gi|89893636|ref|YP_517123.1| hypothetical protein DSY0890 [Desulfitobacterium hafniense Y51]
 gi|89333084|dbj|BAE82679.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 379

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 16 DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+  CP D  +   N + ++ D C  CG+C  +CP +
Sbjct: 28 HCIGHCPADAIHYDNNHIYLNKDSCNGCGLCLSDCPTE 65



 Score = 37.1 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCF-YEGENFL---AIHPDECIDCGVCEPECPVDAIKPDTE 60
           + + C+ C    C   CP      E ++ +   +     C+DC +CE  CP +AI  D E
Sbjct: 266 INDQCVNCG--MCRNYCPSGTLQMEVKDGVCEHSFTSGNCLDCRICELFCPKEAISRDRE 323

Query: 61  PGLELW 66
                +
Sbjct: 324 KVERPF 329


>gi|319942137|ref|ZP_08016455.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804347|gb|EFW01231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
          Length = 552

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 9   CILCKHT----DCVEVCPVDC-FYEGENF-LAIHPDECIDCGVCEPECPVDAI 55
           C+ C +     +C  VCP +     G       + D C  CG+C  ECP  AI
Sbjct: 493 CMSCGNCFECDNCYGVCPDNAVIKLGPGKRFRFNYDYCKGCGICANECPCGAI 545


>gi|317476662|ref|ZP_07935906.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907125|gb|EFV28835.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 502

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPEC- 50
           + ENCI      +  +C   CPV             E      ++ + CI CG CE  C 
Sbjct: 425 IKENCICITDDVECGNCARHCPVGAIQMVASDPENPESRKIPVVNTERCIGCGACENLCP 484

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 485 SRPFSAIYVE 494



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 17/80 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIKP 57
            ++C  C    CV VCP        +   +   E       C  +C  C   CP  AI+P
Sbjct: 351 AQHCTAC--QLCVSVCPNQVLRPSSDLTRLMQPEMSYERGYCRPECTKCAEVCPAGAIRP 408

Query: 58  DTEPG-------LELWLKIN 70
            T+           +W+K N
Sbjct: 409 ITKADKSAIQIGHAVWIKEN 428


>gi|237744522|ref|ZP_04575003.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 7_1]
 gi|229431751|gb|EEO41963.1| anaerobic sulfite reductase subunit C [Fusobacterium sp. 7_1]
          Length = 324

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A
Sbjct: 172 DRCVACG--ACVKKCKKLSVEALRMENNKIVRDENKCIGCGECVINCPMSA 220


>gi|218130166|ref|ZP_03458970.1| hypothetical protein BACEGG_01754 [Bacteroides eggerthii DSM 20697]
 gi|217987670|gb|EEC53998.1| hypothetical protein BACEGG_01754 [Bacteroides eggerthii DSM 20697]
          Length = 502

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPEC- 50
           + ENCI      +  +C   CPV             E      ++ + CI CG CE  C 
Sbjct: 425 IKENCICITDDVECGNCARHCPVGAIQMVASDPENPESRKIPVVNTERCIGCGACENLCP 484

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 485 SRPFSAIYVE 494



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 17/80 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIKP 57
            ++C  C    CV VCP        +   +   E       C  +C  C   CP  AI+P
Sbjct: 351 AQHCTAC--QLCVSVCPNQVLRPSSDLTRLMQPEMSYERGYCRPECTKCAEVCPAGAIRP 408

Query: 58  DTEPG-------LELWLKIN 70
            T+           +W+K N
Sbjct: 409 ITKADKSAIQIGHAVWIKEN 428


>gi|153930946|ref|YP_001382420.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936038|ref|YP_001385972.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|152926990|gb|ABS32490.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931952|gb|ABS37451.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
          Length = 387

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D   +G   +   +  +CI C  C+  CP  AI+
Sbjct: 317 IKEKCIGCN--RCAEVCPEKPYVIDMIKKGGKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 7.4,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPTLIKEKCIGCNRCAEVCP 332


>gi|94266265|ref|ZP_01289971.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
 gi|93453147|gb|EAT03615.1| Twin-arginine translocation pathway signal [delta proteobacterium
           MLMS-1]
          Length = 248

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
            +   C+ C +  CV  CP    Y+ +    +  +  +CI C  C   CP DA   + E
Sbjct: 116 FIPVLCMQCNNPPCVRACPTKATYKDQQHGIVMMENRKCIGCKTCVIACPYDARFFNEE 174



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 11/54 (20%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHP-DECI--------DCGVCEPECPVD 53
           CI CK   CV  CP D  +  E   A+   D CI            C   CP  
Sbjct: 154 CIGCK--TCVIACPYDARFFNEETHAMDKCDFCIHTRLAKGEKLTACSAACPTG 205


>gi|68304986|gb|AAY89997.1| hypothetical protein blr6742 [uncultured bacterium BAC13K9BAC]
          Length = 546

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 28/75 (37%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYE---------GE----------------NFLAIHPDEC 40
           + C+LC   +C+ V PV +C  E         GE                  L I P  C
Sbjct: 462 DLCVLCD--ECLLVRPVHECIKELSSKNIDDNGEVSFKKIEPGKSHGIYHGLLYIDPKVC 519

Query: 41  IDCGVCEPECPVDAI 55
           + CG CE  CP  AI
Sbjct: 520 VRCGECEKACPTGAI 534


>gi|57506083|ref|ZP_00372006.1| ferredoxin, 4Fe-4S [Campylobacter upsaliensis RM3195]
 gi|57015691|gb|EAL52482.1| ferredoxin, 4Fe-4S [Campylobacter upsaliensis RM3195]
          Length = 94

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDC-GV-----CEP 48
          M   +T++CI C    C++ CPV          EGE+   ++ ++C++C G      C  
Sbjct: 1  MAVKITDSCIACG--SCIDECPVSAIVDDANNPEGEDRYYVYSNKCVECIGYNDQPTCAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 VCPTD 63



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPD 58
                D CI CG C  ECPV AI  D
Sbjct: 1  MAVKITDSCIACGSCIDECPVSAIVDD 27


>gi|46201902|ref|ZP_00208298.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
           T C + CP        +  ++    C   G C   CP  AI+ D   G  L+ ++
Sbjct: 286 TRCFDACPSGALSPLGDAASVDAHVCGGHGACASVCPTGAIRFDVPAGNGLFTRL 340


>gi|16131733|ref|NP_418329.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|24115187|ref|NP_709697.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri 2a
           str. 301]
 gi|26250658|ref|NP_756698.1| formate dehydrogenase-O beta subunit [Escherichia coli CFT073]
 gi|30064814|ref|NP_838985.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri 2a
           str. 2457T]
 gi|74314395|ref|YP_312814.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella sonnei
           Ss046]
 gi|82546239|ref|YP_410186.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella boydii
           Sb227]
 gi|89110135|ref|AP_003915.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|91213437|ref|YP_543423.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           UTI89]
 gi|110644234|ref|YP_671964.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli 536]
 gi|110807417|ref|YP_690937.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri 5
           str. 8401]
 gi|117626163|ref|YP_859486.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli APEC O1]
 gi|157155894|ref|YP_001465382.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           E24377A]
 gi|157163365|ref|YP_001460683.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli HS]
 gi|170022095|ref|YP_001727049.1| formate dehydrogenase, beta subunit [Escherichia coli ATCC 8739]
 gi|170083365|ref|YP_001732685.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170680015|ref|YP_001746224.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           SMS-3-5]
 gi|187732413|ref|YP_001882589.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella boydii CDC
           3083-94]
 gi|188495086|ref|ZP_03002356.1| formate dehydrogenase, beta subunit [Escherichia coli 53638]
 gi|191166462|ref|ZP_03028293.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli B7A]
 gi|191173866|ref|ZP_03035386.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli F11]
 gi|193063950|ref|ZP_03045036.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli E22]
 gi|193068035|ref|ZP_03049000.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           E110019]
 gi|194438326|ref|ZP_03070417.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           101-1]
 gi|209921370|ref|YP_002295454.1| formate dehydrogenase iron-sulfur subunit [Escherichia coli SE11]
 gi|218556456|ref|YP_002389370.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli IAI1]
 gi|218560966|ref|YP_002393879.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli S88]
 gi|218692181|ref|YP_002400393.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli ED1a]
 gi|218697608|ref|YP_002405275.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli 55989]
 gi|218701406|ref|YP_002409035.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli IAI39]
 gi|218707522|ref|YP_002415041.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli UMN026]
 gi|227885367|ref|ZP_04003172.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli 83972]
 gi|237702925|ref|ZP_04533406.1| formate dehydrogenase-O beta subunit [Escherichia sp. 3_2_53FAA]
 gi|238902960|ref|YP_002928756.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli BW2952]
 gi|253775469|ref|YP_003038300.1| formate dehydrogenase subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039104|ref|ZP_04873154.1| formate dehydrogenase-O [Escherichia sp. 1_1_43]
 gi|254163843|ref|YP_003046951.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli B str.
           REL606]
 gi|256021537|ref|ZP_05435402.1| formate dehydrogenase-O, Fe-S subunit [Shigella sp. D9]
 gi|256026072|ref|ZP_05439937.1| formate dehydrogenase-O, Fe-S subunit [Escherichia sp. 4_1_40B]
 gi|260846686|ref|YP_003224464.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O103:H2 str. 12009]
 gi|260857705|ref|YP_003231596.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O26:H11 str. 11368]
 gi|293407516|ref|ZP_06651435.1| formate dehydrogenase N beta subunit [Escherichia coli FVEC1412]
 gi|293413331|ref|ZP_06655992.1| formate dehydrogenase [Escherichia coli B354]
 gi|293417355|ref|ZP_06659979.1| formate dehydrogenase [Escherichia coli B185]
 gi|298383259|ref|ZP_06992852.1| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300819276|ref|ZP_07099476.1| formate dehydrogenase, beta subunit [Escherichia coli MS 107-1]
 gi|300823718|ref|ZP_07103844.1| formate dehydrogenase, beta subunit [Escherichia coli MS 119-7]
 gi|306813842|ref|ZP_07448018.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           NC101]
 gi|307140589|ref|ZP_07499945.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           H736]
 gi|307313980|ref|ZP_07593594.1| formate dehydrogenase, beta subunit [Escherichia coli W]
 gi|309796601|ref|ZP_07691007.1| formate dehydrogenase, beta subunit [Escherichia coli MS 145-7]
 gi|312971822|ref|ZP_07785996.1| formate dehydrogenase, beta subunit [Escherichia coli 1827-70]
 gi|331644625|ref|ZP_08345744.1| formate dehydrogenase, beta subunit [Escherichia coli H736]
 gi|331655583|ref|ZP_08356575.1| formate dehydrogenase, beta subunit [Escherichia coli M718]
 gi|331660445|ref|ZP_08361379.1| formate dehydrogenase, beta subunit [Escherichia coli TA206]
 gi|331665546|ref|ZP_08366444.1| formate dehydrogenase, beta subunit [Escherichia coli TA143]
 gi|331670741|ref|ZP_08371577.1| formate dehydrogenase, beta subunit [Escherichia coli TA271]
 gi|331675353|ref|ZP_08376103.1| formate dehydrogenase, beta subunit [Escherichia coli TA280]
 gi|331680007|ref|ZP_08380669.1| formate dehydrogenase, beta subunit [Escherichia coli H591]
 gi|331685632|ref|ZP_08386215.1| formate dehydrogenase, beta subunit [Escherichia coli H299]
 gi|332282775|ref|ZP_08395188.1| formate dehydrogenase-O [Shigella sp. D9]
 gi|77416731|sp|P0AAJ6|FDOH_ECOL6 RecName: Full=Formate dehydrogenase-O iron-sulfur subunit; AltName:
           Full=Aerobic formate dehydrogenase iron-sulfur subunit;
           AltName: Full=FDH-Z subunit beta; AltName: Full=Formate
           dehydrogenase-O subunit beta
 gi|77416732|sp|P0AAJ5|FDOH_ECOLI RecName: Full=Formate dehydrogenase-O iron-sulfur subunit; AltName:
           Full=Aerobic formate dehydrogenase iron-sulfur subunit;
           AltName: Full=FDH-Z subunit beta; AltName: Full=Formate
           dehydrogenase-O subunit beta
 gi|77416820|sp|P0AAJ7|FDOH_SHIFL RecName: Full=Formate dehydrogenase-O iron-sulfur subunit; AltName:
           Full=Aerobic formate dehydrogenase iron-sulfur subunit;
           AltName: Full=FDH-Z subunit beta; AltName: Full=Formate
           dehydrogenase-O subunit beta
 gi|26111089|gb|AAN83272.1|AE016770_72 Formate dehydrogenase-O beta subunit [Escherichia coli CFT073]
 gi|304997|gb|AAB03026.1| formate dehydrogenase-O beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790326|gb|AAD13455.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|24054468|gb|AAN45404.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri 2a
           str. 301]
 gi|30043074|gb|AAP18796.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri 2a
           str. 2457T]
 gi|73857872|gb|AAZ90579.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella sonnei
           Ss046]
 gi|81247650|gb|ABB68358.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella boydii
           Sb227]
 gi|85676166|dbj|BAE77416.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli str. K12
           substr. W3110]
 gi|91075011|gb|ABE09892.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           UTI89]
 gi|110345826|gb|ABG72063.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli 536]
 gi|110616965|gb|ABF05632.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri 5
           str. 8401]
 gi|115515287|gb|ABJ03362.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli APEC O1]
 gi|157069045|gb|ABV08300.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli HS]
 gi|157077924|gb|ABV17632.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           E24377A]
 gi|169757023|gb|ACA79722.1| formate dehydrogenase, beta subunit [Escherichia coli ATCC 8739]
 gi|169891200|gb|ACB04907.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517733|gb|ACB15911.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           SMS-3-5]
 gi|187429405|gb|ACD08679.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella boydii CDC
           3083-94]
 gi|188490285|gb|EDU65388.1| formate dehydrogenase, beta subunit [Escherichia coli 53638]
 gi|190903562|gb|EDV63280.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli B7A]
 gi|190905824|gb|EDV65443.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli F11]
 gi|192929415|gb|EDV83023.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli E22]
 gi|192958655|gb|EDV89093.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           E110019]
 gi|194422763|gb|EDX38759.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           101-1]
 gi|209914629|dbj|BAG79703.1| formate dehydrogenase iron-sulfur subunit [Escherichia coli SE11]
 gi|218354340|emb|CAV01071.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli 55989]
 gi|218363225|emb|CAR00868.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli IAI1]
 gi|218367735|emb|CAR05524.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli S88]
 gi|218371392|emb|CAR19225.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli IAI39]
 gi|218429745|emb|CAR10568.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli ED1a]
 gi|218434619|emb|CAR15550.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli UMN026]
 gi|222035609|emb|CAP78354.1| Formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           LF82]
 gi|226838540|gb|EEH70569.1| formate dehydrogenase-O [Escherichia sp. 1_1_43]
 gi|226902862|gb|EEH89121.1| formate dehydrogenase-O beta subunit [Escherichia sp. 3_2_53FAA]
 gi|227837625|gb|EEJ48091.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli 83972]
 gi|238861134|gb|ACR63132.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli BW2952]
 gi|242379430|emb|CAQ34244.1| formate dehydrogenase-O, beta subunit, subunit of formate
           dehydrogenase-O [Escherichia coli BL21(DE3)]
 gi|253326513|gb|ACT31115.1| formate dehydrogenase, beta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975744|gb|ACT41415.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli B str.
           REL606]
 gi|253979901|gb|ACT45571.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|257756354|dbj|BAI27856.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O26:H11 str. 11368]
 gi|257761833|dbj|BAI33330.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O103:H2 str. 12009]
 gi|260451269|gb|ACX41691.1| formate dehydrogenase, beta subunit [Escherichia coli DH1]
 gi|281603287|gb|ADA76271.1| Formate dehydrogenase-O, iron-sulfur subunit [Shigella flexneri
           2002017]
 gi|284923995|emb|CBG37094.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli 042]
 gi|291425433|gb|EFE98472.1| formate dehydrogenase N beta subunit [Escherichia coli FVEC1412]
 gi|291430875|gb|EFF03871.1| formate dehydrogenase [Escherichia coli B185]
 gi|291468079|gb|EFF10577.1| formate dehydrogenase [Escherichia coli B354]
 gi|294491514|gb|ADE90270.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           IHE3034]
 gi|298276293|gb|EFI17813.1| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300523780|gb|EFK44849.1| formate dehydrogenase, beta subunit [Escherichia coli MS 119-7]
 gi|300528162|gb|EFK49224.1| formate dehydrogenase, beta subunit [Escherichia coli MS 107-1]
 gi|305852840|gb|EFM53287.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           NC101]
 gi|306906297|gb|EFN36813.1| formate dehydrogenase, beta subunit [Escherichia coli W]
 gi|307556037|gb|ADN48812.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli ABU
           83972]
 gi|307628969|gb|ADN73273.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           UM146]
 gi|308119757|gb|EFO57019.1| formate dehydrogenase, beta subunit [Escherichia coli MS 145-7]
 gi|310334199|gb|EFQ00404.1| formate dehydrogenase, beta subunit [Escherichia coli 1827-70]
 gi|312948469|gb|ADR29296.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313647176|gb|EFS11630.1| formate dehydrogenase, beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|315063185|gb|ADT77512.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli W]
 gi|315138461|dbj|BAJ45620.1| formate dehydrogenase N beta subunit [Escherichia coli DH1]
 gi|315617683|gb|EFU98288.1| formate dehydrogenase, beta subunit [Escherichia coli 3431]
 gi|320176221|gb|EFW51284.1| Formate dehydrogenase O beta subunit [Shigella dysenteriae CDC
           74-1112]
 gi|320184917|gb|EFW59702.1| Formate dehydrogenase O beta subunit [Shigella flexneri CDC 796-83]
 gi|320196883|gb|EFW71505.1| Formate dehydrogenase O beta subunit [Escherichia coli WV_060327]
 gi|323155126|gb|EFZ41314.1| formate dehydrogenase, beta subunit [Escherichia coli EPECa14]
 gi|323167523|gb|EFZ53230.1| formate dehydrogenase, beta subunit [Shigella sonnei 53G]
 gi|323174372|gb|EFZ59998.1| formate dehydrogenase, beta subunit [Escherichia coli LT-68]
 gi|323182415|gb|EFZ67822.1| formate dehydrogenase, beta subunit [Escherichia coli 1357]
 gi|323380751|gb|ADX53019.1| formate dehydrogenase, beta subunit [Escherichia coli KO11]
 gi|323934381|gb|EGB30794.1| formate dehydrogenase [Escherichia coli E1520]
 gi|323939064|gb|EGB35281.1| formate dehydrogenase [Escherichia coli E482]
 gi|323943725|gb|EGB39823.1| formate dehydrogenase [Escherichia coli H120]
 gi|323949384|gb|EGB45273.1| formate dehydrogenase [Escherichia coli H252]
 gi|323954334|gb|EGB50119.1| formate dehydrogenase [Escherichia coli H263]
 gi|323959340|gb|EGB55001.1| formate dehydrogenase [Escherichia coli H489]
 gi|323964242|gb|EGB59725.1| formate dehydrogenase [Escherichia coli M863]
 gi|323969760|gb|EGB65043.1| formate dehydrogenase [Escherichia coli TA007]
 gi|323974302|gb|EGB69431.1| formate dehydrogenase [Escherichia coli TW10509]
 gi|324111492|gb|EGC05473.1| formate dehydrogenase [Escherichia fergusonii B253]
 gi|325499407|gb|EGC97266.1| formate dehydrogenase-O, Fe-S subunit [Escherichia fergusonii
           ECD227]
 gi|327250525|gb|EGE62233.1| formate dehydrogenase, beta subunit [Escherichia coli STEC_7v]
 gi|331036087|gb|EGI08323.1| formate dehydrogenase, beta subunit [Escherichia coli H736]
 gi|331046684|gb|EGI18769.1| formate dehydrogenase, beta subunit [Escherichia coli M718]
 gi|331052394|gb|EGI24431.1| formate dehydrogenase, beta subunit [Escherichia coli TA206]
 gi|331057231|gb|EGI29221.1| formate dehydrogenase, beta subunit [Escherichia coli TA143]
 gi|331061996|gb|EGI33919.1| formate dehydrogenase, beta subunit [Escherichia coli TA271]
 gi|331067413|gb|EGI38818.1| formate dehydrogenase, beta subunit [Escherichia coli TA280]
 gi|331072333|gb|EGI43666.1| formate dehydrogenase, beta subunit [Escherichia coli H591]
 gi|331077103|gb|EGI48318.1| formate dehydrogenase, beta subunit [Escherichia coli H299]
 gi|332084124|gb|EGI89329.1| formate dehydrogenase, beta subunit [Shigella boydii 5216-82]
 gi|332088283|gb|EGI93403.1| formate dehydrogenase, beta subunit [Shigella boydii 3594-74]
 gi|332105127|gb|EGJ08473.1| formate dehydrogenase-O [Shigella sp. D9]
 gi|332345885|gb|AEE59219.1| formate dehydrogenase, beta subunit FdxH [Escherichia coli UMNK88]
 gi|332751520|gb|EGJ81920.1| formate dehydrogenase, beta subunit [Shigella flexneri K-671]
 gi|332751623|gb|EGJ82022.1| formate dehydrogenase, beta subunit [Shigella flexneri 4343-70]
 gi|332752601|gb|EGJ82987.1| formate dehydrogenase, beta subunit [Shigella flexneri 2747-71]
 gi|332764573|gb|EGJ94805.1| formate dehydrogenase, beta subunit [Shigella flexneri 2930-71]
 gi|332997662|gb|EGK17274.1| formate dehydrogenase, beta subunit [Shigella flexneri VA-6]
 gi|332998488|gb|EGK18086.1| formate dehydrogenase, beta subunit [Shigella flexneri K-272]
 gi|332998569|gb|EGK18166.1| formate dehydrogenase, beta subunit [Shigella flexneri K-218]
 gi|333013925|gb|EGK33287.1| formate dehydrogenase, beta subunit [Shigella flexneri K-304]
 gi|333013984|gb|EGK33345.1| formate dehydrogenase, beta subunit [Shigella flexneri K-227]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D I         
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD-IPRLNPEDNR 156

Query: 65  LW 66
           ++
Sbjct: 157 VY 158


>gi|303248577|ref|ZP_07334833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490018|gb|EFL49940.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 200

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C++ C        E +  + +    CI C  C   CP    + 
Sbjct: 61  ACLHCVAPACLDACAAGAISKSEEDGRVVVDAARCIGCKACARACPYGVPQF 112



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGV------CEPECPVDAIKP 57
           V    CI CK   C   CP      G + + +  D C+D  +      C   CP  A+  
Sbjct: 90  VDAARCIGCK--ACARACPYGVPQFGPDKVMVKCDLCLDQQLGGLEPPCVATCPDRALVW 147

Query: 58  DT 59
           + 
Sbjct: 148 EE 149


>gi|298675109|ref|YP_003726859.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303]
 gi|298288097|gb|ADI74063.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 644

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C E+C ++          I  D CI+CG C   CP +    + + G  +W
Sbjct: 517 EKCTGCG--RCSELCKLNAISIVAGKAVIDRDLCINCGWCVRGCPHEGAV-EDKTGYSIW 573

Query: 67  LKIN 70
           +  N
Sbjct: 574 IGGN 577



 Score = 37.4 bits (86), Expect = 0.67,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +    C  CG C   CP + I+ D    
Sbjct: 13 VVDKGLCTLCGACAAVCPYEIIEFDENGP 41



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYE--------GENFLAIHPDECIDCGVCEPECPVDAI 55
           +  CP  C           G+    I  ++C  CG C   C ++AI
Sbjct: 489 IAGCPNSCVRAESNDIGIVGQMRPKIDEEKCTGCGRCSELCKLNAI 534


>gi|220905149|ref|YP_002480461.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869448|gb|ACL49783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 386

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-CIDCGVCEPECPVDAIKPDT 59
           T  C  C H  CV VCP     + E    I   + C+ C +C   CP   I  +T
Sbjct: 56  TVRCHQCPHAPCVNVCPTGALQQDEQGRIIMRVQYCVACKMCMAACPYGTITMET 110


>gi|170290138|ref|YP_001736954.1| glycyl-radical activating family protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174218|gb|ACB07271.1| glycyl-radical enzyme activating protein family [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 299

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV+VCP+     +  +   I  + C  CG C   CP +A+K
Sbjct: 54  CLHC--HLCVDVCPLQAIRIDKGDVHIIDRELCDACGKCSDNCPSNALK 100


>gi|170289901|ref|YP_001736717.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173981|gb|ACB07034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 171

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C+   C+E CP       +   + I  + C  CG C   CP  AI+
Sbjct: 58  CRFCEPAPCMEACPTGSIRRNDIGAIVIFEETCSSCGNCINSCPYGAIR 106


>gi|198244810|ref|YP_002217958.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939326|gb|ACH76659.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326625749|gb|EGE32094.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|126439381|ref|YP_001058346.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 668]
 gi|166918789|sp|A3N7M5|NUOI_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|126218874|gb|ABN82380.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           668]
          Length = 162

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|116747835|ref|YP_844522.1| indolepyruvate ferredoxin oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696899|gb|ABK16087.1| Indolepyruvate ferredoxin oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 616

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V E C  C        CP       +  + I    C  CGVC   CP  A++  +E
Sbjct: 559 VNEKCKGCDFCVKQFECPALRPRGEKEPIVIDDSLCSGCGVCVRVCPHGALEAVSE 614


>gi|11497625|ref|NP_068845.1| putative ATPase RIL [Archaeoglobus fulgidus DSM 4304]
 gi|2650646|gb|AAB91222.1| RNase L inhibitor [Archaeoglobus fulgidus DSM 4304]
          Length = 586

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 7  ENCI--LCKHTDCVEVCP-VDCFYEG---ENFLAIHPDECIDCGVCEPECPVDAI 55
          E C    C   +CV+ CP V    E    E+   I  + C+ CG+C  +CP+ AI
Sbjct: 11 ERCQPKKCG-QECVKYCPRVRTGDETVKIEDKAVISENLCVGCGICVKKCPMHAI 64


>gi|14521282|ref|NP_126757.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           abyssi GE5]
 gi|5458500|emb|CAB49988.1| iorA-like indolepyruvate ferredoxin oxidoreductase related protein,
           alpha and beta subunits [Pyrococcus abyssi GE5]
          Length = 613

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ E C  CK    +  C    +      + I    C  CG+C   CP DAIK   E  
Sbjct: 555 IIEEKCTGCKACILLSGCQALIYDPETRKVKIDELICTGCGICNQLCPFDAIKFREELE 613


>gi|15834073|ref|NP_312846.1| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|168748818|ref|ZP_02773840.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755571|ref|ZP_02780578.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761730|ref|ZP_02786737.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768188|ref|ZP_02793195.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775280|ref|ZP_02800287.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780804|ref|ZP_02805811.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786742|ref|ZP_02811749.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|168799535|ref|ZP_02824542.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|195937533|ref|ZP_03082915.1| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808903|ref|ZP_03251240.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813940|ref|ZP_03255269.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818459|ref|ZP_03258779.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398803|ref|YP_002273410.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324662|ref|ZP_03440746.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795888|ref|YP_003080725.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|261223520|ref|ZP_05937801.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261257283|ref|ZP_05949816.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285307|ref|YP_003502125.1| Formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|13364295|dbj|BAB38242.1| formate dehydrogenase-O iron-sulfur subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187769120|gb|EDU32964.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016796|gb|EDU54918.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001488|gb|EDU70474.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357170|gb|EDU75589.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362637|gb|EDU81056.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189367938|gb|EDU86354.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373333|gb|EDU91749.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189378011|gb|EDU96427.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208728704|gb|EDZ78305.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735217|gb|EDZ83904.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738582|gb|EDZ86264.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160203|gb|ACI37636.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209752558|gb|ACI74586.1| formate dehydrogenase-O major subunit [Escherichia coli]
 gi|209752560|gb|ACI74587.1| formate dehydrogenase-O major subunit [Escherichia coli]
 gi|209752562|gb|ACI74588.1| formate dehydrogenase-O major subunit [Escherichia coli]
 gi|209752564|gb|ACI74589.1| formate dehydrogenase-O major subunit [Escherichia coli]
 gi|209752566|gb|ACI74590.1| formate dehydrogenase-O major subunit [Escherichia coli]
 gi|217320883|gb|EEC29307.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595288|gb|ACT74649.1| formate dehydrogenase-O, Fe-S subunit [Escherichia coli O157:H7
           str. TW14359]
 gi|290765180|gb|ADD59141.1| Formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|320191013|gb|EFW65663.1| Formate dehydrogenase O beta subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639232|gb|EFX08859.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320644620|gb|EFX13674.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320649944|gb|EFX18452.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320655251|gb|EFX23197.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660878|gb|EFX28324.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666037|gb|EFX33056.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338100|gb|EGD61930.1| Formate dehydrogenase O beta subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326342605|gb|EGD66378.1| Formate dehydrogenase O beta subunit [Escherichia coli O157:H7 str.
           1125]
          Length = 300

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D I         
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD-IPRLNPEDNR 156

Query: 65  LW 66
           ++
Sbjct: 157 VY 158


>gi|110637549|ref|YP_677756.1| ferredoxin [Cytophaga hutchinsonii ATCC 33406]
 gi|110280230|gb|ABG58416.1| probable ferredoxin [Cytophaga hutchinsonii ATCC 33406]
          Length = 469

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 18/67 (26%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +CI C    CV VCP       G         ECI+C  C  EC         P   I+ 
Sbjct: 269 DCIDC--HQCVHVCPTGIDIRNGVQM------ECINCTACIDECDSIMDKIGKPHGLIRY 320

Query: 58  DTEPGLE 64
            +E G+ 
Sbjct: 321 ASEEGIR 327



 Score = 34.4 bits (78), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 27  YEGENFLAIHPDECIDCGVCEPECPVD 53
             GE+       +CIDC  C   CP  
Sbjct: 257 KRGEDREIAGKGDCIDCHQCVHVCPTG 283


>gi|317488229|ref|ZP_07946798.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325830727|ref|ZP_08164111.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|316912671|gb|EFV34211.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325487134|gb|EGC89577.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 375

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
           T+        DCV  CP    +       L+     CI CG+C   CP  AI+
Sbjct: 301 TDRSRCTNSLDCVAACPTGARFPSPENGELSFDARYCIGCGLCVDACPQQAIE 353



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 4  VVTENCILCKHTDCVE---VCPVDCFYEGENF-LAIHPDECIDCGVCEPECPV 52
          V+ + C   +  DC      CP D     E+    I  D C  CG+C   C  
Sbjct: 28 VLRDYCTRVRGADCSRCALACPHDAIGFAEDGRPTIDTDACTRCGICLGICDA 80


>gi|268611863|ref|ZP_06145590.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 268

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI CK   C + CP +         +I  ++C +CG C   CPV  I       ++ 
Sbjct: 214 CIGCK--ICEKKCPSEAIKVENFHASIDYEKCTNCGSCMAACPVKVIHSCEPASVQE 268



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI      CV VC             + P  C  CG C   CP   I
Sbjct: 140 CIGLGD--CVNVCEHGAIKVENGVAKVIPSLCGACGQCAAVCPNQLI 184


>gi|255659850|ref|ZP_05405259.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida
           DSM 20544]
 gi|260847927|gb|EEX67934.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida
           DSM 20544]
          Length = 778

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 9   CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
           C  CK   C+E CP          +G       P+ CI CG+C   CP
Sbjct: 711 CRDCK--MCLESCPEKAINRIEHEDGTIEYTSDPNRCIGCGICAGVCP 756


>gi|239624430|ref|ZP_04667461.1| anaerobic dimethyl sulfoxide reductase chain B [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520816|gb|EEQ60682.1| anaerobic dimethyl sulfoxide reductase chain B [Clostridiales
           bacterium 1_7_47FAA]
          Length = 176

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C    C+  CPV C  + +   F       CI C  C   CP  A + 
Sbjct: 60  ACMHCVDAPCIAACPVGCLIKDQETGFTIYDNTNCIGCKSCALACPFGAPRY 111


>gi|205352736|ref|YP_002226537.1| respiratory nitrate reductase 2 subunit beta [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272517|emb|CAR37412.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627804|gb|EGE34147.1| respiratory nitrate reductase 2 beta chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 514

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C D  +C   CP   I  + + G
Sbjct: 183 CEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRDWRLCISGCPYKKIYFNWKSG 238


>gi|153002651|ref|YP_001368332.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151367269|gb|ABS10269.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 228

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP       +    ++++  +C+ C  C   CP 
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPY 142


>gi|260493921|ref|ZP_05814052.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_33]
 gi|260198067|gb|EEW95583.1| sulfite reductase, subunit C [Fusobacterium sp. 3_1_33]
          Length = 324

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C    V+      N +    ++CI CG C   CP+ A
Sbjct: 172 DRCVACG--ACVKKCKKLSVEALKMENNKIVRDANKCIGCGECVINCPMSA 220


>gi|167562185|ref|ZP_02355101.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis EO147]
 gi|167569430|ref|ZP_02362304.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis C6786]
          Length = 162

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
           mobilis]
          Length = 609

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C   CP D      +    I  ++CI CG C   C  +A+K
Sbjct: 561 CNGCGL--CRRDCPTDAITGSTKQRHVIDQEKCIRCGNCVDSCKRNAVK 607



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CP     E   F  I    C  CG+C  +CP DAI
Sbjct: 543 CPAGVCRELTTF-EIDGALCNGCGLCRRDCPTDAI 576


>gi|27380889|ref|NP_772418.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
 gi|27354055|dbj|BAC51043.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110]
          Length = 479

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 16/78 (20%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +C+ C    C+ VCP          L      CI CG+C   C         P   I  D
Sbjct: 264 DCVDC--HQCINVCPTGVDIRNGIQL-----GCIQCGLCIDACDNVMREIGRPAGLIGYD 316

Query: 59  TEPGLELWLKINSEYATQ 76
           T+  ++   +  +     
Sbjct: 317 TDINMQRRREGKAPLYRI 334


>gi|238787783|ref|ZP_04631580.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia frederiksenii
           ATCC 33641]
 gi|238724126|gb|EEQ15769.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia frederiksenii
           ATCC 33641]
          Length = 325

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKESMKE 196


>gi|118578917|ref|YP_900167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118501627|gb|ABK98109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 435

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 5   VT-ENCILCKHTDCVEVCPVDCFYE---------GENFLAIHPDECIDCGVCEPECPVDA 54
           +T E C  C    C + CP++              +    I    C+ CGVC  +CP  A
Sbjct: 287 ITREKCSGCGL--CAQACPINAIAMVAADTRSPKRKQDAVIDTAICLGCGVCALKCPSGA 344



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  ++C  CG+C   CP++AI
Sbjct: 287 ITREKCSGCGLCAQACPINAI 307


>gi|331090680|ref|ZP_08339529.1| hypothetical protein HMPREF9477_00172 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400094|gb|EGG79745.1| hypothetical protein HMPREF9477_00172 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 250

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +   C  C    C + CP      GE ++ +  + CI C  C   CP  A
Sbjct: 176 IKRTCNHCG--KCAKECPAGAISMGE-YIKLDKNLCISCMRCVAVCPRHA 222



 Score = 33.6 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 6/35 (17%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEY 73
            C  CG C  ECP  AI       +  ++K++   
Sbjct: 179 TCNHCGKCAKECPAGAI------SMGEYIKLDKNL 207


>gi|327478839|gb|AEA82149.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 313

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D CI CG C   CP D
Sbjct: 96  DGCMHCADPGCLKACPAPGAIVKYANGIVDFNQDHCIGCGYCITGCPFD 144



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 17/70 (24%)

Query: 7   ENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ++CI C +  C+  CP D     E +        +C  C           C   CP  AI
Sbjct: 129 DHCIGCGY--CITGCPFDIPRISEKDKKAY----KCTLCSDRVSVGLEPACVKTCPTGAI 182

Query: 56  KPDTEPGLEL 65
              ++  ++ 
Sbjct: 183 VFGSKEDMKE 192


>gi|296274184|ref|YP_003656815.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098358|gb|ADG94308.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 170

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 14/66 (21%)

Query: 6   TENCILCKHTDCVEVCPVDCFY------------EGENFLAIHPDECIDCGVCEPECPVD 53
           +E C+ C    C   CP +C +            +      I   EC+ CG C   CP D
Sbjct: 75  SEKCVAC--YMCATACPAECIFIDAEERFDGKAEKRPKEFKIDLLECVYCGYCVEACPCD 132

Query: 54  AIKPDT 59
           AI+ DT
Sbjct: 133 AIRMDT 138



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGLE 64
           ++C+ C +C   CP + I  D E   +
Sbjct: 76  EKCVACYMCATACPAECIFIDAEERFD 102


>gi|294496437|ref|YP_003542930.1| glutamate synthase (NADPH) GltB2 subunit [Methanohalophilus mahii
          DSM 5219]
 gi|292667436|gb|ADE37285.1| glutamate synthase (NADPH) GltB2 subunit [Methanohalophilus mahii
          DSM 5219]
          Length = 504

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          + C+ C    CV+ C    F E ++  + I   +C  C  C   CP DAI     P
Sbjct: 17 QQCMQC--MRCVDNCSYGVFREEDDGNILIDSRKCTACHRCISMCPRDAINLSERP 70


>gi|297565706|ref|YP_003684678.1| NADH-quinone oxidoreductase subunit I [Meiothermus silvanus DSM
           9946]
 gi|296850155|gb|ADH63170.1| NADH-quinone oxidoreductase, chain I [Meiothermus silvanus DSM
           9946]
          Length = 199

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C  +CP    Y              GE +     I+   CI CG+CE  C
Sbjct: 52  EKCIGC--SLCAAICPAYAIYVEPAENDPAHPTSAGERYAKVYEINMLRCIFCGLCEEAC 109

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    +  +  +
Sbjct: 110 PTGAVVLGYDFEMADY 125


>gi|166031919|ref|ZP_02234748.1| hypothetical protein DORFOR_01620 [Dorea formicigenerans ATCC
           27755]
 gi|166028372|gb|EDR47129.1| hypothetical protein DORFOR_01620 [Dorea formicigenerans ATCC
           27755]
          Length = 263

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + C  D     +N   I P++C  CG C  +CP   I
Sbjct: 218 CIGCK--MCEKACQFDAVKVLDNVAHIDPEKCTGCGACAAKCPKKVI 262



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
               CV+ CP D  +  +    +  + C  CG C   CP   I+      ++  +K NS+
Sbjct: 146 GEGTCVKACPFDAIHIVDGVAVVDKEACKACGKCVAACPRKLIEI-VPYDMKHLVKCNSK 204


>gi|146280561|ref|YP_001170714.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
 gi|145568766|gb|ABP77872.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           stutzeri A1501]
          Length = 311

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D CI CG C   CP D
Sbjct: 95  DGCMHCADPGCLKACPAPGAIVKYANGIVDFNQDHCIGCGYCITGCPFD 143



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 17/70 (24%)

Query: 7   ENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ++CI C +  C+  CP D     E +        +C  C           C   CP  AI
Sbjct: 128 DHCIGCGY--CITGCPFDIPRISEKDKKAY----KCTLCSDRVSVGLEPACVKTCPTGAI 181

Query: 56  KPDTEPGLEL 65
              ++  ++ 
Sbjct: 182 VFGSKEDMKE 191


>gi|37528694|ref|NP_932039.1| formate dehydrogenase-O, iron-sulfur subunit (formate
           dehydrogenase-O beta subunit) (FDH-Z beta subunit)
           (aerobic formate dehydrogenase iron-sulfur subunit)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36788133|emb|CAE17260.1| formate dehydrogenase-O, iron-sulfur subunit (formate
           dehydrogenase-O beta subunit) (FDH-Z beta subunit)
           (aerobic formate dehydrogenase iron-sulfur subunit)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 309

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     + CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINKEDN 155



 Score = 37.4 bits (86), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP +     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFNVPRINKEDNRVY----KCTLCVDRVNVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   ++  ++ 
Sbjct: 184 IHFGSKKAMKD 194


>gi|114321111|ref|YP_742794.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311310|sp|Q0A783|NUOI_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114227505|gb|ABI57304.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 163

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGEN---------FLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP        G              I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIEAGPREDDGTRRTTLYEIDMFKCIYCGFCEESCPVDSI 118

Query: 56  KPDTEPG 62
               E  
Sbjct: 119 VETREHE 125



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLEL 65
          + CI C +CE  CP  AI  +  P  + 
Sbjct: 61 ERCIACKLCEAVCPALAITIEAGPREDD 88


>gi|332163481|ref|YP_004300058.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667711|gb|ADZ44355.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330861699|emb|CBX71873.1| formate dehydrogenase-O iron-sulfur subunit [Yersinia
           enterocolitica W22703]
          Length = 323

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKEAMKE 196


>gi|318607984|emb|CBY29482.1| formate dehydrogenase O beta subunit [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 323

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKEAMKE 196


>gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 633

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            E C  C    C + CP +     +     +   +CI CG+C   C  DAI
Sbjct: 582 AEACTGC--RSCAKKCPQEAIAGEKKQPHKLDQAKCIKCGICYDACKFDAI 630



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CP     +      I  + C  C  C  +CP +AI  + +   +L
Sbjct: 567 CPAG-VCKALFHYEIDAEACTGCRSCAKKCPQEAIAGEKKQPHKL 610


>gi|302388562|ref|YP_003824384.1| ferredoxin [Clostridium saccharolyticum WM1]
 gi|302199190|gb|ADL06761.1| putative ferredoxin [Clostridium saccharolyticum WM1]
          Length = 68

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
          + + C+ C    CV  CP           A I  D CI CG C   CP D I  +  
Sbjct: 10 IGKECVACG--SCVTTCPKGAIAIASGVTARIDKDRCIGCGKCARICPADVITIEER 64


>gi|291527542|emb|CBK93128.1| hypothetical protein ERE_11070 [Eubacterium rectale M104/1]
          Length = 173

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 4  VVTENCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPV 52
          ++ + C  C+   C  VCP  C      YEG     ++ ++C++C +C   CPV
Sbjct: 5  IIKDRCTGCEG--CASVCPTKCIDMVQNYEGFFMPQVNSNKCVNCKMCINICPV 56


>gi|254512090|ref|ZP_05124157.1| cytochrome c oxidase accessory protein CcoG [Rhodobacteraceae
           bacterium KLH11]
 gi|221535801|gb|EEE38789.1| cytochrome c oxidase accessory protein CcoG [Rhodobacteraceae
           bacterium KLH11]
          Length = 454

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCPV         L     ECI C +C   C
Sbjct: 238 DCIDC--MACVNVCPVGIDIRDGQQL-----ECITCALCIDAC 273



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 25/71 (35%)

Query: 17  CVEVCP---VDCFYEGENFLAI-------HPD------------ECIDCGVCEPECPVDA 54
           C+  CP   +      E+ L +        P             +CIDC  C   CPV  
Sbjct: 194 CIYACPWPRIQAAMMDEDTLVVGYREWRGEPRGKGKRTSESELGDCIDCMACVNVCPVG- 252

Query: 55  IKPDTEPGLEL 65
              D   G +L
Sbjct: 253 --IDIRDGQQL 261


>gi|188585285|ref|YP_001916830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349972|gb|ACB84242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 374

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
          C  +CP +       F +I    CI C +C  +CP  AI          + +I
Sbjct: 37 CASICPREAISIQGAFPSILRKNCIGCHICVRQCPNGAIYQTDFDYYRKYREI 89



 Score = 40.5 bits (94), Expect = 0.084,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-----EGE-NFLAI--HPDECIDCGVCEPECPVDAIK 56
           ++ +C  C    C + C            GE   + I   P +C DCG+C+  CPVDAIK
Sbjct: 260 ISPDCYGCGL--CAKSCDFGALTINTWGSGESKQIVIQHSPWKCFDCGICKLACPVDAIK 317


>gi|170682605|ref|YP_001744869.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           SMS-3-5]
 gi|170520323|gb|ACB18501.1| formate hydrogenlyase, subunit F [Escherichia coli SMS-3-5]
          Length = 180

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C  + CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--SACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCSACVNACPSNALTVETD 60


>gi|144899618|emb|CAM76482.1| iron-sulfur cluster-binding protein [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 488

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 21/81 (25%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPDT 59
           C+ CK   CV+ CP        N L      CI CGVC   C         P   I  D+
Sbjct: 272 CVDCK--MCVQSCPTGVDIRFGNQL-----ACIGCGVCIDACDQIMDKFGLPRGLISYDS 324

Query: 60  EPGLELWLKINSEYATQWPNI 80
           +  LE       E   + P I
Sbjct: 325 QVNLEA-----REAGRKAPGI 340


>gi|153004871|ref|YP_001379196.1| formate dehydrogenase subunit beta [Anaeromyxobacter sp. Fw109-5]
 gi|152028444|gb|ABS26212.1| formate dehydrogenase, beta subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 290

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +V + C+ C    C++ CP      +  N +     D CI CG C+  CP +
Sbjct: 93  IVKDGCLHCADPGCLKACPAPGAIVQYSNGIVDFKQDNCIGCGYCQTGCPFN 144


>gi|13539180|emb|CAC35754.1| putative iron-sulfur protein (PscB) [Chlorobium chlorovibrioides]
 gi|13539223|emb|CAC35764.1| putative iron-sulfur protein (PscB) [Chlorobium chlorovibrioides]
          Length = 232

 Score = 47.5 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  ++           EG     I  D CI C  C    EC
Sbjct: 137 FIIENLCVGCGL--CLDKCPPKINAIGYKFYGDVQEGGFRCYIDQDACISCSACFSGDEC 194

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 195 PSGALIEQLPDGE 207


>gi|323697804|ref|ZP_08109716.1| NIL domain protein [Desulfovibrio sp. ND132]
 gi|323457736|gb|EGB13601.1| NIL domain protein [Desulfovibrio desulfuricans ND132]
          Length = 147

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C    C  +CP D        L    + D+C  CG+C   CPV  +  D +  
Sbjct: 89  DACIHCGV--CTAMCPTDALALDRETLKVVFNVDKCSACGMCTRVCPVKCMTLDMDEN 144



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             D CI CGVC   CP DA+  D E
Sbjct: 87  DEDACIHCGVCTAMCPTDALALDRE 111


>gi|322613101|gb|EFY10051.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619172|gb|EFY16055.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322626038|gb|EFY22850.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626502|gb|EFY23308.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632385|gb|EFY29133.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635133|gb|EFY31854.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642664|gb|EFY39254.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647953|gb|EFY44425.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650703|gb|EFY47104.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652886|gb|EFY49223.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657201|gb|EFY53481.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662311|gb|EFY58526.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666846|gb|EFY63022.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672116|gb|EFY68231.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675838|gb|EFY71910.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681746|gb|EFY77772.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684059|gb|EFY80068.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193331|gb|EFZ78546.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197688|gb|EFZ82821.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200738|gb|EFZ85809.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207257|gb|EFZ92209.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211459|gb|EFZ96300.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218495|gb|EGA03203.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221022|gb|EGA05454.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225998|gb|EGA10217.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231678|gb|EGA15790.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236073|gb|EGA20151.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239505|gb|EGA23554.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243901|gb|EGA27912.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249264|gb|EGA33181.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250493|gb|EGA34376.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258947|gb|EGA42599.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260192|gb|EGA43815.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265311|gb|EGA48808.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270533|gb|EGA53979.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|323141693|ref|ZP_08076571.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413849|gb|EFY04690.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 296

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V    CI C    C+E C +DC + G+        ECI CG C   CPV AI
Sbjct: 248 VNAVKCINCD--RCMEHCKMDCRHVGD-------SECIACGECRKVCPVKAI 290


>gi|320182319|gb|EFW57220.1| Formate dehydrogenase O beta subunit [Shigella boydii ATCC 9905]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|312879724|ref|ZP_07739524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310783015|gb|EFQ23413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 375

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    CV  C       G + +A I  + C+ CG C   C   A +   E       
Sbjct: 195 CVGCG--ACVAHCAHGAVTLGPDRIARIDEERCVGCGQCIVSCAFGAAQVVWEHSGAALG 252

Query: 68  KINSEYA 74
           +  +EYA
Sbjct: 253 ERIAEYA 259


>gi|297625182|ref|YP_003706616.1| NADH-quinone oxidoreductase subunit I [Truepera radiovictrix DSM
           17093]
 gi|297166362|gb|ADI16073.1| NADH-quinone oxidoreductase, chain I [Truepera radiovictrix DSM
           17093]
          Length = 174

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 18/76 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E CI C  + C   CP    Y              GE +     I+   CI CG CE  C
Sbjct: 51  EKCIGC--SLCAAACPAYAIYVEAAENDPENPTSPGERYAKIYEINMLRCIFCGFCEEAC 108

Query: 51  PVDAIKPDTEPGLELW 66
           P  A+    E  L  +
Sbjct: 109 PTGAVVLGHEFELSDF 124


>gi|217076870|ref|YP_002334586.1| ferredoxin 2 [Thermosipho africanus TCF52B]
 gi|217036723|gb|ACJ75245.1| ferredoxin 2 [Thermosipho africanus TCF52B]
          Length = 534

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHT-DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          Y+++     CK+   C+  CPV      +N   +   EC+ CG C   CP DA
Sbjct: 4  YIISNQ-ANCKYCYKCLRNCPVKSISFSDNISKVIDSECVLCGKCIEVCPQDA 55


>gi|169335538|ref|ZP_02862731.1| hypothetical protein ANASTE_01953 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258276|gb|EDS72242.1| hypothetical protein ANASTE_01953 [Anaerofustis stercorihominis DSM
           17244]
          Length = 376

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVD----CFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y+V + CI CK   CV  CP+      F E EN ++    +CI C  C+  C   AI+ 
Sbjct: 308 PYIVQKKCIRCK--ICVNACPLPDKAISFNEKENRISYDYSKCIRCYCCQEMCQSKAIEV 365

Query: 58  DTE 60
            T 
Sbjct: 366 KTP 368


>gi|153954855|ref|YP_001395620.1| transcription regulator [Clostridium kluyveri DSM 555]
 gi|219855312|ref|YP_002472434.1| hypothetical protein CKR_1969 [Clostridium kluyveri NBRC 12016]
 gi|146347713|gb|EDK34249.1| Predicted transcriptional regulator containing a ferredoxin
          domain [Clostridium kluyveri DSM 555]
 gi|219569036|dbj|BAH07020.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 639

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 7  ENCILCKHTDCVEVCPV-----DCFYEGENFLAIHPDECIDCGVCEPEC 50
          E C+ C    C+  CPV         EG+N + I+ ++CI CG C   C
Sbjct: 13 EKCVGCN--KCIVNCPVIGANIAYIVEGKNKVKINGEKCIHCGECIKVC 59


>gi|82702228|ref|YP_411794.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
 gi|115502511|sp|Q2YA19|NUOI2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|82410293|gb|ABB74402.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
          Length = 162

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESEQREDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRED 87


>gi|26987230|ref|NP_742655.1| formate dehydrogenase, beta subunit [Pseudomonas putida KT2440]
 gi|24981870|gb|AAN66119.1|AE016240_4 formate dehydrogenase, iron-sulfur subunit [Pseudomonas putida
           KT2440]
 gi|313496856|gb|ADR58222.1| Formate dehydrogenase, beta subunit [Pseudomonas putida BIRD-1]
          Length = 316

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D CI CG C   CP +
Sbjct: 94  DGCMHCADPGCLKACPSPGAIIKHANGIVDFNQDHCIGCGYCITGCPFN 142


>gi|45358388|ref|NP_987945.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
 gi|44921146|emb|CAF30381.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
          Length = 654

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 20/74 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP+    E                        I  + CIDCG+C  
Sbjct: 244 EKCTGCG--SCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTIDKESCIDCGLCAK 301

Query: 49  ECPVDAIKPDTEPG 62
            C   AI    +P 
Sbjct: 302 VCGPQAIDYGQKPE 315



 Score = 38.2 bits (88), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 4   VVTENCILCKHTD-CVEVCPVDC--FYEGENFLA--IHPDECIDCGVCEPECPVDAIKPD 58
           VVT +  +C     CV+ CP     F E +  +   +    C  CG C   CP  A++  
Sbjct: 576 VVTIDENVCGACGICVQQCPYGAPRFVEKDGKVVAEVLSALCKGCGTCAAGCPSGALEQS 635

Query: 59  TEPGLELWLKI 69
                +++ +I
Sbjct: 636 HFKTSQIYGQI 646


>gi|53718855|ref|YP_107841.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei K96243]
 gi|53725807|ref|YP_103426.1| NADH dehydrogenase subunit I [Burkholderia mallei ATCC 23344]
 gi|67642184|ref|ZP_00440944.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8
           horse 4]
 gi|76809047|ref|YP_332852.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1710b]
 gi|121600349|ref|YP_992477.1| NADH dehydrogenase subunit I [Burkholderia mallei SAVP1]
 gi|124383581|ref|YP_001026720.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10229]
 gi|126448769|ref|YP_001079995.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10247]
 gi|126452103|ref|YP_001065585.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1106a]
 gi|134283892|ref|ZP_01770588.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305]
 gi|167000360|ref|ZP_02266178.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20]
 gi|167718853|ref|ZP_02402089.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei DM98]
 gi|167737861|ref|ZP_02410635.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 14]
 gi|167815044|ref|ZP_02446724.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 91]
 gi|167823460|ref|ZP_02454931.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 9]
 gi|167845012|ref|ZP_02470520.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei B7210]
 gi|167893553|ref|ZP_02480955.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 7894]
 gi|167901999|ref|ZP_02489204.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei NCTC 13177]
 gi|167910235|ref|ZP_02497326.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 112]
 gi|167918268|ref|ZP_02505359.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei BCC215]
 gi|217420048|ref|ZP_03451554.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576]
 gi|226195304|ref|ZP_03790893.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811590|ref|YP_002896041.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit
           i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346]
 gi|242314671|ref|ZP_04813687.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b]
 gi|254175738|ref|ZP_04882398.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399]
 gi|254181179|ref|ZP_04887776.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1655]
 gi|254190542|ref|ZP_04897049.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195148|ref|ZP_04901577.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           S13]
 gi|254202102|ref|ZP_04908465.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH]
 gi|254207432|ref|ZP_04913782.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU]
 gi|254260039|ref|ZP_04951093.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1710a]
 gi|254298541|ref|ZP_04965993.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           406e]
 gi|254359854|ref|ZP_04976124.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280]
 gi|81380042|sp|Q63VM5|NUOI_BURPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81604658|sp|Q62IP3|NUOI_BURMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502520|sp|Q3JUA1|NUOI_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633514|sp|A3NTB4|NUOI_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918786|sp|A3MIA9|NUOI_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918787|sp|A2S451|NUOI_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918788|sp|A1V2M4|NUOI_BURMS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|52209269|emb|CAH35214.1| putative NADH dehydrogenase I chain I [Burkholderia pseudomallei
           K96243]
 gi|52429230|gb|AAU49823.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 23344]
 gi|76578500|gb|ABA47975.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1710b]
 gi|121229159|gb|ABM51677.1| NADH dehydrogenase I, I subunit [Burkholderia mallei SAVP1]
 gi|124291601|gb|ABN00870.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10229]
 gi|126225745|gb|ABN89285.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106a]
 gi|126241639|gb|ABO04732.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10247]
 gi|134244681|gb|EBA44779.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305]
 gi|147746349|gb|EDK53426.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH]
 gi|147751326|gb|EDK58393.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU]
 gi|148029094|gb|EDK86999.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280]
 gi|157808385|gb|EDO85555.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           406e]
 gi|157938217|gb|EDO93887.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696782|gb|EDP86752.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399]
 gi|169651896|gb|EDS84589.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           S13]
 gi|184211717|gb|EDU08760.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1655]
 gi|217397352|gb|EEC37368.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576]
 gi|225932506|gb|EEH28504.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237504518|gb|ACQ96836.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit
           i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346]
 gi|238523280|gb|EEP86719.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8
           horse 4]
 gi|242137910|gb|EES24312.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b]
 gi|243063694|gb|EES45880.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20]
 gi|254218728|gb|EET08112.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1710a]
          Length = 162

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|320352571|ref|YP_004193910.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Desulfobulbus propionicus DSM 2032]
 gi|320121073|gb|ADW16619.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfobulbus propionicus DSM 2032]
          Length = 95

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDA 54
          + CI C   +C  VCP   F  EGE       D C++CG C   CPV A
Sbjct: 18 DRCIGCG--NCTVVCPHRIFALEGEKLKVGDRDLCMECGACARNCPVQA 64


>gi|319404251|emb|CBI77844.1| NADH dehydrogenase I chain I [Bartonella rochalimae ATCC BAA-1498]
          Length = 163

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP             +G        I   +CI CG C+  CPVDAI
Sbjct: 61  ERCIACKL--CEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAI 118


>gi|319785955|ref|YP_004145430.1| cytochrome C oxidase accessory protein CcoG [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464467|gb|ADV26199.1| cytochrome c oxidase accessory protein CcoG [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 516

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP                ECI CG C   C
Sbjct: 316 DCIDC--TICVQVCPTGIDIRNGLQY-----ECIACGACIDAC 351


>gi|313682653|ref|YP_004060391.1| hypothetical protein Sulku_1529 [Sulfuricurvum kujiense DSM
          16994]
 gi|313155513|gb|ADR34191.1| hypothetical protein Sulku_1529 [Sulfuricurvum kujiense DSM
          16994]
          Length = 132

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 15/73 (20%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCG------VCEP 48
          M+ ++ + CI C    C++ CPV+   +      G+    + PD+C++C        C  
Sbjct: 1  MSVIINDTCITCD--ACLQQCPVNAIVDDSSNPTGKKQYYVQPDKCVECVGIYDDPQCAA 58

Query: 49 ECP-VDAIKPDTE 60
           CP +  I  D  
Sbjct: 59 ICPSIGCITWDMP 71


>gi|317152072|ref|YP_004120120.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942323|gb|ADU61374.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2]
          Length = 267

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 6  TENCILCKHTDCVEVCPVDCFYE-GENFLAIHP---DECIDCGVCEPECPVDAIKPDTEP 61
          T  C  C    C   CP     E GE F  + P     CI CG C   CPV A+     P
Sbjct: 5  TGICKRCG--ACAAECPYSLIVEDGEGFPWLRPAARKTCIGCGHCVAVCPVGALTLPDLP 62


>gi|325983281|ref|YP_004295683.1| NADH-quinone oxidoreductase, chain I [Nitrosomonas sp. AL212]
 gi|325532800|gb|ADZ27521.1| NADH-quinone oxidoreductase, chain I [Nitrosomonas sp. AL212]
          Length = 162

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPAMAITIESEQRADGTRRTTRYDIDLSKCIFCGFCEESCPVDSI 117



 Score = 35.1 bits (80), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRAD 87


>gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
 gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
           gammatolerans EJ3]
          Length = 229

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           V+T  CI C    C   CP       E    I  + CI CG C   CP
Sbjct: 171 VLTGLCIGCG--ACELSCPTGAIRLVEKRPTIIQERCIRCGTCYIRCP 216



 Score = 37.4 bits (86), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 40  CIDCGVCEPECPVDAIK 56
           CI CG CE  CP  AI+
Sbjct: 176 CIGCGACELSCPTGAIR 192


>gi|157963777|ref|YP_001503811.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848777|gb|ABV89276.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 227

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVD 53
           +C  C  T CV+VCP    Y+      +++   +C+ C  C   CP  
Sbjct: 95  SCQHCDDTPCVKVCPTGAAYKDPKTGIVSVDEWKCVGCQYCIAACPYQ 142


>gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT]
 gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT]
          Length = 299

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           ++ NCI C   +C   C V    +  N   I  ++CI+CG C   C  +A
Sbjct: 49 FISRNCIQCG--NCARACKVGAI-DVINRNGIDKNKCINCGKCVETCYANA 96



 Score = 34.0 bits (77), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 40 CIDCGVCEPECPVDAI 55
          CI CG C   C V AI
Sbjct: 54 CIQCGNCARACKVGAI 69


>gi|84488956|ref|YP_447188.1| HdrA2 [Methanosphaera stadtmanae DSM 3091]
 gi|84372275|gb|ABC56545.1| HdrA2 [Methanosphaera stadtmanae DSM 3091]
          Length = 771

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+LC    CVE C         N + +    C  CG C   CP +AI
Sbjct: 582 CVLCG--SCVENCVYQAITLNRNSIHVDAISCTGCGDCIITCPQEAI 626



 Score = 42.1 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 20/69 (28%)

Query: 3   YVVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECIDCG 44
           YV T+ C  C    C   CP    D + EG                +   +  + CI CG
Sbjct: 242 YVDTQKCTSCG--RCTSACPTVVPDEWNEGLINRKAIYKPFPQAVPSTYTLDDEHCIKCG 299

Query: 45  VCEPECPVD 53
           +C   CP +
Sbjct: 300 ICTNVCPTN 308


>gi|18313500|ref|NP_560167.1| formate dehydrogenase beta subunit [Pyrobaculum aerophilum str.
           IM2]
 gi|18161039|gb|AAL64349.1| formate dehydrogenase beta subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 281

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAIK 56
           GE  + I+ +ECI CG CE  CP D  K
Sbjct: 115 GEGAVVINKEECIGCGYCEAACPYDVPK 142



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 14/56 (25%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG---------VCEPECPVD 53
           E CI C +  C   CP D   +G +       +C  C           C   CP +
Sbjct: 124 EECIGCGY--CEAACPYDVPKKGSDGRYY---KCTFCVDRIQNGRAPACVEVCPTN 174


>gi|95928438|ref|ZP_01311186.1| NADH-quinone oxidoreductase, chain I [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135709|gb|EAT17360.1| NADH-quinone oxidoreductase, chain I [Desulfuromonas acetoxidans
           DSM 684]
          Length = 131

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C  VCP  C      E EN         I    CI CG C   CPV+AI+
Sbjct: 50  EKCVACYL--CPTVCPAKCITVEAAEDENGVKYPTVYQIDMLRCIFCGYCVEACPVEAIE 107

Query: 57  PDTEPGLELW 66
              E  L  +
Sbjct: 108 MTGEYELANY 117


>gi|304314927|ref|YP_003850074.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588386|gb|ADL58761.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 376

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E C  C    CVE CP D    G          CI+C  C   CP  A   D
Sbjct: 311 ERCRNCNV--CVESCPADALKSGALVPEFDYSSCINCLCCMEVCPHRAFYQD 360



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           I P+ C +C VC   CP DA+K
Sbjct: 308 IDPERCRNCNVCVESCPADALK 329


>gi|226487090|emb|CAX75410.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
          japonicum]
          Length = 137

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 36 ERCIACKL--CEAICPAQAITIEAEPRAGGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 92



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + EP
Sbjct: 36 ERCIACKLCEAICPAQAITIEAEP 59



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 77  CIYCGF--CQEACPVDAIVEGPNFEY 100


>gi|168263072|ref|ZP_02685045.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205348061|gb|EDZ34692.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|152989003|ref|YP_001350851.1| nitrate-inducible formate dehydrogenase subunit beta [Pseudomonas
           aeruginosa PA7]
 gi|150964161|gb|ABR86186.1| formate dehydrogenase, beta subunit [Pseudomonas aeruginosa PA7]
          Length = 309

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D+CI CG C   CP D
Sbjct: 94  DGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFD 142


>gi|134045695|ref|YP_001097181.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus
           maripaludis C5]
 gi|132663320|gb|ABO34966.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus
           maripaludis C5]
          Length = 654

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 20/74 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP+    E                        I  + CIDCG+C  
Sbjct: 244 EKCTGCG--SCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTIDKESCIDCGLCAK 301

Query: 49  ECPVDAIKPDTEPG 62
            C   AI    +P 
Sbjct: 302 VCGPQAIDYGQKPE 315



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 9   CILCKHTDCVEVCPVDC--FYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV+ CP     F E +  +   +    C  CG C   CP  A++       +
Sbjct: 584 CGGCG--ICVQQCPYGAPRFVEKDGKVVAEVLSALCKGCGTCAAGCPSGALEQSHFKTSQ 641

Query: 65  LWLKI 69
           ++ +I
Sbjct: 642 IYGQI 646



 Score = 33.6 bits (76), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  + C  CG+C  +CP  A +   + G
Sbjct: 579 IDENVCGGCGICVQQCPYGAPRFVEKDG 606


>gi|62182496|ref|YP_218913.1| formate dehydrogenase-O, Fe-S subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62130129|gb|AAX67832.1| formate dehydrogenase-O, Fe-S subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322716991|gb|EFZ08562.1| formate dehydrogenase-O, Fe-S subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|83955192|ref|ZP_00963848.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family protein
           [Sulfitobacter sp. NAS-14.1]
 gi|83840521|gb|EAP79694.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family protein
           [Sulfitobacter sp. NAS-14.1]
          Length = 535

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +CI C    CV VCP+     EG+        ECI C +C   C     K     GL
Sbjct: 286 VLGDCIDCN--ACVAVCPMGIDIREGQQM------ECITCALCIDACDDVMAKIGRPRGL 337

Query: 64  ELWLKINSE 72
             +L ++ E
Sbjct: 338 IDYLALDDE 346


>gi|331268846|ref|YP_004395338.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
 gi|329125396|gb|AEB75341.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
          Length = 282

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C  VC  D     +    I    C  CG C   CP +AI+ + E    +++
Sbjct: 67  CTNCG--KCQRVCRFDAISNNK----IDSYSCEGCGTCIIVCPNNAIQLNEEKSANMYI 119



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G     I+   C +CG C+  C  DAI
Sbjct: 56 GGKVAEINDKLCTNCGKCQRVCRFDAI 82


>gi|291545029|emb|CBL18138.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus sp. 18P13]
          Length = 575

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V  + C  CK   C+++ CP       E    I   +C+ CG+C  +C   AI
Sbjct: 524 HVEADKCKSCK--MCLKLGCP--AISMREGKAVIDHTQCVGCGICMEQCKFGAI 573


>gi|253996091|ref|YP_003048155.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
 gi|253982770|gb|ACT47628.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
          Length = 481

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  + CV+VCP                ECI CG C   C
Sbjct: 270 SCIDC--SMCVQVCPTGIDIRKGLQY-----ECIGCGACADVC 305


>gi|261342162|ref|ZP_05970020.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315495|gb|EFC54433.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC
           35316]
          Length = 180

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AI+   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVEIDLKSGELAWQFNLGRCIFCGRCEEVCPTAAIRLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  + +
Sbjct: 36 NPQQCIGCAACVNACPSNALTVEID 60


>gi|152981162|ref|YP_001353325.1| 4Fe-4S ferredoxin, iron sulfur binding [Janthinobacterium sp.
           Marseille]
 gi|151281239|gb|ABR89649.1| 4Fe-4S ferredoxin, iron sulfur binding [Janthinobacterium sp.
           Marseille]
          Length = 466

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
            CI C  + CV+VCPV               ECI C  C   C
Sbjct: 259 ACIDC--SMCVQVCPVGIDIRDGLQY-----ECIGCAACVDAC 294



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 39  ECIDCGVCEPECPVD 53
            CIDC +C   CPV 
Sbjct: 259 ACIDCSMCVQVCPVG 273


>gi|158521172|ref|YP_001529042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509998|gb|ABW66965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 1002

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    C  VCP D  F + E  ++ +  +C+ CG+C   CP  A
Sbjct: 937 DICMSCL--ACFRVCPFDSPFIDEEGHISHNEVKCMGCGICAGVCPAKA 983



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPN 79
            + PD+C  CG+CE +CP   +  + E GL     I S  A   PN
Sbjct: 105 YVDPDKCTGCGICEKKCP-KLVTSEFEQGLTKRKAIYSLLAQAVPN 149



 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 25/80 (31%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEG---------------ENFLAIHPDECI--- 41
           YV  + C  C    C + CP      F +G                N   I  D C+   
Sbjct: 105 YVDPDKCTGCG--ICEKKCPKLVTSEFEQGLTKRKAIYSLLAQAVPNTRVIDYDNCLYFQ 162

Query: 42  --DCGVCEPECPVDAIKPDT 59
              C  CE  C   AI  + 
Sbjct: 163 RGRCKACEKFCTAGAINFED 182


>gi|152983886|ref|YP_001349135.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas aeruginosa
           PA7]
 gi|150959044|gb|ABR81069.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas aeruginosa
           PA7]
          Length = 471

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP        + L I   ECI C  C   C
Sbjct: 269 DCIDC--TMCVQVCPTGIDIR--DGLQI---ECIGCAACIDAC 304


>gi|83590738|ref|YP_430747.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573652|gb|ABC20204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 228

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCF--YEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           ++  + C+ C    C  VCP       E       I P  C+ C  C   CP  +I+
Sbjct: 157 HINPDRCLACG--RCRRVCPAGAIATNEAPGKSYRILPRYCLFCFACLEVCPRSSIE 211



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
             I+PD C+ CG C   CP  AI  +  PG
Sbjct: 156 FHINPDRCLACGRCRRVCPAGAIATNEAPG 185


>gi|16767301|ref|NP_462916.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991561|ref|ZP_02572660.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168244219|ref|ZP_02669151.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168467369|ref|ZP_02701206.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821625|ref|ZP_02833625.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194451151|ref|YP_002048037.1| formate dehydrogenase-O iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197261745|ref|ZP_03161819.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|204930210|ref|ZP_03221187.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|238912180|ref|ZP_04656017.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422599|gb|AAL22875.1| formate dehydrogenase-O, Fe-S subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194409455|gb|ACF69674.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195630226|gb|EDX48866.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197240000|gb|EDY22620.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|204320614|gb|EDZ05816.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205329943|gb|EDZ16707.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205336904|gb|EDZ23668.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341794|gb|EDZ28558.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|261249152|emb|CBG27013.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996323|gb|ACY91208.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160543|emb|CBW20073.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915150|dbj|BAJ39124.1| formate dehydrogenase-O iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088442|emb|CBY98201.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225323|gb|EFX50381.1| Formate dehydrogenase O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132378|gb|ADX19808.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990865|gb|AEF09848.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|15804482|ref|NP_290522.1| formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 EDL933]
 gi|12518785|gb|AAG59086.1|AE005620_8 formate dehydrogenase-O, iron-sulfur subunit [Escherichia coli
           O157:H7 str. EDL933]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|14521671|ref|NP_127147.1| hydrogenase-4 component b [Pyrococcus abyssi GE5]
 gi|5458890|emb|CAB50377.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F)
           [Pyrococcus abyssi GE5]
          Length = 185

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDA 54
            ++  E CI C    CV  CP D          G   L  +   CI C  C   CP  A
Sbjct: 45  PHIDPELCIGCG--ACVNACPPDALIMEWDKENGVKRLTFNAARCIRCYRCVEVCPTGA 101



 Score = 42.1 bits (98), Expect = 0.029,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I P+ CI CG C   CP DA+  + +  
Sbjct: 46 HIDPELCIGCGACVNACPPDALIMEWDKE 74


>gi|119775967|ref|YP_928707.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella amazonensis
           SB2B]
 gi|119768467|gb|ABM01038.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella amazonensis
           SB2B]
          Length = 512

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CVEVCP                ECI+CG C   C
Sbjct: 306 DCVDCNL--CVEVCPTGIDIRNGLQY-----ECINCGACVDAC 341


>gi|95928896|ref|ZP_01311642.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135241|gb|EAT16894.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 180

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C ++ CV+ CP     + EN +  +   +C+ C  C   CP  A   + E G 
Sbjct: 59  CMHCDNSPCVDACPTGASIQAENGIVHVEDKKCVGCLSCIMACPYGARYHNHETGA 114


>gi|189345732|ref|YP_001942261.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189339879|gb|ACD89282.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 225

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  V+           EG     +  D CI C  C    EC
Sbjct: 128 FIIENLCVGCGL--CLDKCPPKVNAIGYKFYGDVQEGGFRCYVDQDACISCSACFSGDEC 185

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 186 PSGALIEVLPDGQ 198


>gi|332295485|ref|YP_004437408.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermodesulfobium narugense DSM 14796]
 gi|332178588|gb|AEE14277.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermodesulfobium narugense DSM 14796]
          Length = 139

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C +C    C +VCPV      +  + I+PD C+ C  C   CP  AI+
Sbjct: 47 CTMCG--ICEKVCPVKAIDRRKGVIDINPDACVGCKTCYYMCPFGAIE 92


>gi|325955354|ref|YP_004239014.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Weeksella virosa DSM 16922]
 gi|323437972|gb|ADX68436.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Weeksella virosa DSM 16922]
          Length = 1059

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ +   C  C H  C  VCPV       +G+N +A +   CI    C   CP 
Sbjct: 874 VIFQPIMCQHCNHAPCETVCPVAATSHGRQGQNMMAYN--RCIGTRYCANNCPY 925



 Score = 40.5 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL------WLKINSEYATQWPNITTKKE 85
            L+I  + C  CG C   C  +   P              WL+I+  Y+    N  T+K 
Sbjct: 782 KLSIDMNACTGCGACIIACQAENNVPVVGKDEIRMSRDMYWLRIDRYYSDVTDNTLTQKV 841

Query: 86  SLPSAAKMDGVKQKYEK------YFSPNPGGKN 112
           +L     MDG      +         P     +
Sbjct: 842 ALEG-PNMDGKGDGLNEPQQYKLLIQPKAENPD 873


>gi|319779328|ref|YP_004130241.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG [Taylorella
           equigenitalis MCE9]
 gi|317109352|gb|ADU92098.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG [Taylorella
           equigenitalis MCE9]
          Length = 518

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP       G  ++      CI CG C   C
Sbjct: 282 DCIDC--TMCVQVCPTGIDIRNGLQYM------CIGCGACIDAC 317


>gi|311281651|ref|YP_003943882.1| formate dehydrogenase, beta subunit [Enterobacter cloacae SCF1]
 gi|308750846|gb|ADO50598.1| formate dehydrogenase, beta subunit [Enterobacter cloacae SCF1]
          Length = 297

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|260870612|ref|YP_003237014.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O111:H- str. 11128]
 gi|257766968|dbj|BAI38463.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O111:H- str. 11128]
 gi|323177907|gb|EFZ63491.1| formate dehydrogenase, beta subunit [Escherichia coli 1180]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|239909238|ref|YP_002955980.1| glutamate synthase large subunit [Desulfovibrio magneticus RS-1]
 gi|239799105|dbj|BAH78094.1| glutamate synthase large subunit [Desulfovibrio magneticus RS-1]
          Length = 544

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 28/81 (34%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-----------------ENFLAI--------HPD-ECID 42
           C LC    C  VCPV+    G                  N  +I         P   CI 
Sbjct: 28  CTLCG--RCTSVCPVNAIELGVHRKRTVEALPGLLKKPTNSYSIYHGIRQRTDPAYRCIG 85

Query: 43  CGVCEPECPVDAIKPDTEPGL 63
           C +C   CP +AI P   P  
Sbjct: 86  CAMCNMVCPNNAIAPRLRPEA 106



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 36 HPDECIDCGVCEPECPVDAIK 56
            + C  CG C   CPV+AI+
Sbjct: 24 DKNTCTLCGRCTSVCPVNAIE 44


>gi|300777483|ref|ZP_07087341.1| formate dehydrogenase-N, beta subunit [Chryseobacterium gleum ATCC
           35910]
 gi|300502993|gb|EFK34133.1| formate dehydrogenase-N, beta subunit [Chryseobacterium gleum ATCC
           35910]
          Length = 191

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C+   C  VCP D   + E  +    D  +CI C  C   CP    +   +  +
Sbjct: 60  CMHCEDPICANVCPADAITKDEYGIVHTADTSKCIGCANCVIGCPFGVPQIPDQSAM 116


>gi|225548111|ref|ZP_03769396.1| hypothetical protein RUMHYD_00090 [Blautia hydrogenotrophica DSM
          10507]
 gi|225040787|gb|EEG51033.1| hypothetical protein RUMHYD_00090 [Blautia hydrogenotrophica DSM
          10507]
          Length = 395

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 16/88 (18%)

Query: 8  NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          +C  C    CV++CP  C       EG     +    C++CG C   CPV+         
Sbjct: 11 DCSGCG--ACVQICPQSCLALRPDKEGFLHPIMDSQNCVNCGKCIKVCPVE--------N 60

Query: 63 LELWLKINSEYATQWPNITTKKESLPSA 90
           + ++ + + YA    + T  K+S   A
Sbjct: 61 PKKYVPL-ASYAAISKDNTMLKKSSSGA 87



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVD--AIKPDTE 60
           NF AI+ ++C  CG C   CP    A++PD E
Sbjct: 2  GNFSAINKNDCSGCGACVQICPQSCLALRPDKE 34


>gi|206901319|ref|YP_002250452.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740422|gb|ACI19480.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 137

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
           + C+ C +  CV  CP       E  L +     +C  CG+C   CP  A++
Sbjct: 83  DKCVHCGY--CVSYCPTKALNRDEKTLTVSFDSQKCTACGICVEICPYSAME 132


>gi|124486233|ref|YP_001030849.1| pyruvate ferredoxin oxidoreductase, delta subunit
          [Methanocorpusculum labreanum Z]
 gi|124363774|gb|ABN07582.1| pyruvate ferredoxin oxidoreductase, delta subunit
          [Methanocorpusculum labreanum Z]
          Length = 88

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP--VDAIKPDTEP 61
          TE C  C    C  +CP  C  +  +    I  D C  CG+C  ECP    AI    E 
Sbjct: 31 TEKCTKCG--TCQLICPEGCINQNPDKTYSIDLDFCKGCGMCAEECPDKAKAIHMVKEE 87


>gi|125975026|ref|YP_001038936.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum ATCC 27405]
 gi|256005088|ref|ZP_05430058.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 2360]
 gi|281418557|ref|ZP_06249576.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum JW20]
 gi|125715251|gb|ABN53743.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum ATCC 27405]
 gi|255990939|gb|EEU01051.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 2360]
 gi|281407641|gb|EFB37900.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum JW20]
 gi|316939187|gb|ADU73221.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 1313]
          Length = 290

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
           M   V + CI C    C  VCP       + E  L  +  +CI CG C   CP  A
Sbjct: 158 MPSWVKDKCIYCGL--CQAVCPAKVIEVKKQEKELTFNEKDCIYCGKCVKVCPTSA 211



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            D+CI CG+C+  CP   I+   +     + +
Sbjct: 163 KDKCIYCGLCQAVCPAKVIEVKKQEKELTFNE 194


>gi|325972134|ref|YP_004248325.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy]
 gi|324027372|gb|ADY14131.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy]
          Length = 582

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 7   ENCILCKHTDCVEVCPV-------DCFYEGEN-------FLAIHPDECIDCGVCEPECPV 52
           E CI C    CV+VC         +    G+         L +    C+ CG C   CPV
Sbjct: 146 EKCIKCG--RCVQVCQDLQGVFALEFIGRGDETCMAPAAMLKLEDSPCVRCGQCAAHCPV 203

Query: 53  DAIKPDTE 60
            AI    E
Sbjct: 204 GAIYEKDE 211



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 33  LAIHPDECIDCGVCEPEC 50
           + + P++CI CG C   C
Sbjct: 141 IVLDPEKCIKCGRCVQVC 158


>gi|317494602|ref|ZP_07953015.1| formate dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917532|gb|EFV38878.1| formate dehydrogenase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 312

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + E  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKEDN 155



 Score = 37.8 bits (87), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDVPRMNKEDNRVY----KCTLCVDRVAVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 184 IHFGTKEAMKE 194


>gi|312876635|ref|ZP_07736616.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796588|gb|EFR12936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 373

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    CV+ C        E     I  ++C+ CG C   C  +A     +    +  
Sbjct: 196 CVGCG--MCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFEAATVKWDEAASIAS 253

Query: 68  KINSEYA 74
           +  +EYA
Sbjct: 254 EKIAEYA 260


>gi|268324256|emb|CBH37844.1| iron-sulfur cluster-binding protein [uncultured archaeon]
          Length = 678

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           ++   C++C    C  +CP     + +N +      CI CG+CE  CP +AI  +     
Sbjct: 536 IIGPKCLICN--ACETLCPTKALTKDKNKINFVYGRCIACGLCEQACPEEAITLERTLDF 593

Query: 64  ELWLK 68
              ++
Sbjct: 594 SRLIE 598



 Score = 42.8 bits (100), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C    C   CP +      + +      C DCG C   CP  AI+
Sbjct: 201 CISCGL--CAGACPKEAIQ--YDAVYTIGAGCDDCGDCVSVCPTGAIE 244



 Score = 40.5 bits (94), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 11  LCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
            C++  C+  CP +  +     +     +C  CG+C   CP+   K    P   ++ +I
Sbjct: 313 GCEY--CL-PCPYNAIWREGTKMVFSEVKCQGCGLCTSLCPLSVPKLHEYPDHLIYSQI 368



 Score = 39.7 bits (92), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPD 58
           I   +CI CG+C   CP +AI+ D
Sbjct: 196 IDLAKCISCGLCAGACPKEAIQYD 219


>gi|298531053|ref|ZP_07018454.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509076|gb|EFI32981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 356

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           C+ C    C   C V  F +  +      P  C+ C  C   CP +    +
Sbjct: 116 CMHCLEPACAHSCFVKAFAKRPDGAVTYDPKVCVGCRYCMMACPFNIPAYE 166


>gi|218281314|ref|ZP_03487802.1| hypothetical protein EUBIFOR_00367 [Eubacterium biforme DSM 3989]
 gi|218217499|gb|EEC91037.1| hypothetical protein EUBIFOR_00367 [Eubacterium biforme DSM 3989]
          Length = 59

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C    CV  CPV     + E         CIDCG C   CPV AI
Sbjct: 10 DACIGCG--ACVGGCPVGALSLDDEGKSVCDEGTCIDCGSCVGTCPVGAI 57



 Score = 37.8 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I  D CI CG C   CPV A+  D E
Sbjct: 7  IDKDACIGCGACVGGCPVGALSLDDE 32


>gi|219852538|ref|YP_002466970.1| protein of unknown function DUF362 [Methanosphaerula palustris
           E1-9c]
 gi|219546797|gb|ACL17247.1| protein of unknown function DUF362 [Methanosphaerula palustris
           E1-9c]
          Length = 383

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C + CP +       ++  I    CI C  C+  CP  AI+
Sbjct: 324 CTRCG--TCRDNCPPEAITMKVGDYPMIDQSRCIACFCCQELCPAGAIE 370



 Score = 33.6 bits (76), Expect = 9.1,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 34  AIHPDECIDCGVCEPECPVDAI 55
            +    C  CG C   CP +AI
Sbjct: 318 VVDRARCTRCGTCRDNCPPEAI 339


>gi|169333719|ref|ZP_02860912.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259568|gb|EDS73534.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 256

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          M  V    CI C    C   CP       +    I   EC+ CG CE  CP +AI
Sbjct: 4  MIEVDENKCIGCGL--CKRDCPTANIKLEDKKAKIITMECLYCGHCEAICPKNAI 56



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + +  ++CI CG+C+ +CP   IK + +
Sbjct: 4  MIEVDENKCIGCGLCKRDCPTANIKLEDK 32


>gi|164686831|ref|ZP_02210859.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM
          16795]
 gi|164604221|gb|EDQ97686.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM
          16795]
          Length = 274

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + CI C  T C + C V      +    I    CI CG C   CPV A+  D E  
Sbjct: 6  DKCIGC--TLCKQDCIVSDIEMIDKKAHIRNLTCIKCGHCIAICPVKAVSCDDEEE 59


>gi|94969319|ref|YP_591367.1| formate dehydrogenase beta subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551369|gb|ABF41293.1| formate dehydrogenase beta subunit [Candidatus Koribacter
           versatilis Ellin345]
          Length = 260

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++ C  C++  C+E CP       E   + +  D C  C  C   CP   ++ + + G
Sbjct: 81  SDVCKHCENAGCLEACPTGALTRTEFGGVYLQSDVCNGCSYCVVSCPFGVVQKNVKDG 138


>gi|55378119|ref|YP_135969.1| ferridoxin protein [Haloarcula marismortui ATCC 43049]
 gi|55230844|gb|AAV46263.1| putative ferridoxin protein [Haloarcula marismortui ATCC 43049]
          Length = 711

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
           V + C       C  +CP D     GE  LA +  +C++CG+CE  CP  AI
Sbjct: 577 VNDACT--LTPTCTNLCPTDAIQRTGEGELAFNHADCVNCGLCEEGCPETAI 626



 Score = 40.1 bits (93), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 15  TDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           T CV+ CP         + +      C +CG C   CP  A
Sbjct: 313 TACVDACPHGAVDRPTIDSVEFDEVACENCGACTSSCPTGA 353



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           VT++CI C    CV   P     E    + IHPD   D G     CP DAI  D
Sbjct: 195 VTDDCIDCMD--CVREGPDGMVTEFP--VDIHPDA-PD-GEWTNTCPTDAIDLD 242


>gi|46446201|ref|YP_007566.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399842|emb|CAF23291.1| probable NADH-ubiquinone oxidoreductase chain I [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 143

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 18/77 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------------EGENF---LAIHPDECIDCGVCEPEC 50
           E C+ C+   C  VCP    Y              GE +     I+   CI CG CE  C
Sbjct: 42  ERCVGCEL--CAIVCPAQAIYVKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEAC 99

Query: 51  PVDAIKPDTEPGLELWL 67
           P  AI    +  L  + 
Sbjct: 100 PTGAIVLSNQYELSAYT 116


>gi|126172436|ref|YP_001048585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|160877386|ref|YP_001556702.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|217971392|ref|YP_002356143.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|304412297|ref|ZP_07393905.1| twin-arginine translocation pathway signal [Shewanella baltica
           OS183]
 gi|307306081|ref|ZP_07585826.1| twin-arginine translocation pathway signal [Shewanella baltica
           BA175]
 gi|125995641|gb|ABN59716.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
 gi|160862908|gb|ABX51442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|217496527|gb|ACK44720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
 gi|304349332|gb|EFM13742.1| twin-arginine translocation pathway signal [Shewanella baltica
           OS183]
 gi|306910954|gb|EFN41381.1| twin-arginine translocation pathway signal [Shewanella baltica
           BA175]
 gi|315269590|gb|ADT96443.1| twin-arginine translocation pathway signal [Shewanella baltica
           OS678]
          Length = 228

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C+   CV VCP       +    ++++  +C+ C  C   CP 
Sbjct: 96  SCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPY 142


>gi|309390310|gb|ADO78190.1| nitroreductase [Halanaerobium praevalens DSM 2228]
          Length = 273

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          M  +  E CI C    C+  C V      +    I  + C  CG C   CP DA+   TE
Sbjct: 1  MMQIDQEKCIGC--AKCITDCLVRDIVMEDGKARIKNESCFKCGHCIAICPADAVSS-TE 57

Query: 61 PGLELWLKINSEYAT 75
            ++   +  +E   
Sbjct: 58 YEMDEVKEYKAEKFE 72


>gi|301059609|ref|ZP_07200518.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
 gi|300446255|gb|EFK10111.1| Hdr-like menaquinol oxidoreductase iron-sulfur, subunit 1 [delta
           proteobacterium NaphS2]
          Length = 259

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C    CV  CP    +  E +  + +    CI C  C   CP  +   +        
Sbjct: 120 CNHCDDPPCVRACPTQATFKREKDGIVMMDYHRCIGCRFCMAACPYGSRSFNFRDPRPYV 179

Query: 67  LKINSEYATQWPNITTKK 84
            KIN  + T+   +  K 
Sbjct: 180 RKINPAFPTRRRGVVEKC 197


>gi|242239936|ref|YP_002988117.1| formate dehydrogenase subunit beta [Dickeya dadantii Ech703]
 gi|242131993|gb|ACS86295.1| formate dehydrogenase, beta subunit [Dickeya dadantii Ech703]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     + CI CG C   CP +  + + +  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNKDDN 155


>gi|238919984|ref|YP_002933499.1| electron transport complex protein RnfC [Edwardsiella ictaluri
           93-146]
 gi|259494050|sp|C5BDE7|RNFC_EDWI9 RecName: Full=Electron transport complex protein rnfC
 gi|238869553|gb|ACR69264.1| electron transport complex protein RnfC [Edwardsiella ictaluri
           93-146]
          Length = 800

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 12/57 (21%)

Query: 7   ENCILCKHTDCVEVCPV-------DCFYEGENFLA---IHPDECIDCGVCEPECPVD 53
           + CI C    C +VCP          F +G+        H  ECI+CG C   CP +
Sbjct: 376 QPCIRCG--ACADVCPARLLPQQLYWFSQGKEHDKARGYHLQECIECGACAYVCPSN 430


>gi|156846852|ref|XP_001646312.1| hypothetical protein Kpol_1032p48 [Vanderwaltozyma polyspora DSM
          70294]
 gi|156116987|gb|EDO18454.1| hypothetical protein Kpol_1032p48 [Vanderwaltozyma polyspora DSM
          70294]
          Length = 607

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 4  VVTEN-C--ILCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVD 53
          +V+E+ C    C+  +C   CPV      C     N     I    CI CG+C  +CP D
Sbjct: 10 IVSEDKCKPRKCR-QECKRSCPVVKTGKLCIEVAPNSKIAFISEILCIGCGICVKKCPFD 68

Query: 54 AIK 56
          AI+
Sbjct: 69 AIQ 71


>gi|153953567|ref|YP_001394332.1| anaerobic sulfite reductase-related protein [Clostridium kluyveri
           DSM 555]
 gi|219854189|ref|YP_002471311.1| hypothetical protein CKR_0846 [Clostridium kluyveri NBRC 12016]
 gi|146346448|gb|EDK32984.1| Anaerobic sulfite reductase-related protein [Clostridium kluyveri
           DSM 555]
 gi|219567913|dbj|BAH05897.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 9   CILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CV+ C          G   +    D+CI CG C  +CP  A
Sbjct: 86  CIGC--QACVKNCKKRSTGALTFGSFKVVRDHDKCIGCGECVGKCPTGA 132


>gi|126179464|ref|YP_001047429.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125862258|gb|ABN57447.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 132

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C+ C    C+ VCP + F ++ E  L +  + C+ CG C   CP  A
Sbjct: 81  EECVDCG--ACIGVCPQEVFSFDAEWRLVVSAERCVLCGKCIRACPHGA 127



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 30  ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           EN +    +EC+DCG C   CP +    D E
Sbjct: 73  ENAVVRDEEECVDCGACIGVCPQEVFSFDAE 103


>gi|26249119|ref|NP_755159.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           CFT073]
 gi|91212080|ref|YP_542066.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UTI89]
 gi|117624952|ref|YP_853940.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           APEC O1]
 gi|170765966|ref|ZP_02900777.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627]
 gi|218690844|ref|YP_002399056.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           ED1a]
 gi|227888258|ref|ZP_04006063.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           83972]
 gi|237706657|ref|ZP_04537138.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA]
 gi|300976820|ref|ZP_07173637.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1]
 gi|301049523|ref|ZP_07196481.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1]
 gi|306812402|ref|ZP_07446600.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           NC101]
 gi|331658828|ref|ZP_08359770.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA206]
 gi|26109526|gb|AAN81729.1|AE016765_131 Formate hydrogenlyase subunit 6 [Escherichia coli CFT073]
 gi|91073654|gb|ABE08535.1| formate hydrogenlyase subunit 6 [Escherichia coli UTI89]
 gi|115514076|gb|ABJ02151.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           APEC O1]
 gi|170125112|gb|EDS94043.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627]
 gi|218428408|emb|CAR09333.2| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           ED1a]
 gi|226899697|gb|EEH85956.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA]
 gi|227834527|gb|EEJ44993.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           83972]
 gi|294491620|gb|ADE90376.1| formate hydrogenlyase, subunit F [Escherichia coli IHE3034]
 gi|300298754|gb|EFJ55139.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1]
 gi|300410006|gb|EFJ93544.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1]
 gi|305854440|gb|EFM54878.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           NC101]
 gi|307554695|gb|ADN47470.1| formate hydrogenlyase subunit 6 [Escherichia coli ABU 83972]
 gi|307625709|gb|ADN70013.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UM146]
 gi|315289283|gb|EFU48678.1| hydrogenase 4 subunit H [Escherichia coli MS 110-3]
 gi|315293723|gb|EFU53075.1| hydrogenase 4 subunit H [Escherichia coli MS 153-1]
 gi|320194858|gb|EFW69487.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli WV_060327]
 gi|323188866|gb|EFZ74151.1| formate hydrogenlyase subunit 6 [Escherichia coli RN587/1]
 gi|323951061|gb|EGB46937.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957068|gb|EGB52793.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|331053410|gb|EGI25439.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA206]
          Length = 180

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE         CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFDLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|51245051|ref|YP_064935.1| pyruvate synthase, gamma subunit [Desulfotalea psychrophila LSv54]
 gi|50876088|emb|CAG35928.1| probable pyruvate synthase, gamma subunit [Desulfotalea
           psychrophila LSv54]
          Length = 309

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + C  C    C   CP            I  D C  C +C  +CP  AI+  +E
Sbjct: 247 QRCKGC-WWICSTFCPDGAIPVRGKIPEIDYDHCKGCMICVAQCPTHAIEAVSE 299


>gi|121604338|ref|YP_981667.1| NADH dehydrogenase subunit I [Polaromonas naphthalenivorans CJ2]
 gi|156633538|sp|A1VM68|NUOI_POLNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120593307|gb|ABM36746.1| NADH dehydrogenase subunit I [Polaromonas naphthalenivorans CJ2]
          Length = 165

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G    +   I   +CI CG CE  CPVD+I
Sbjct: 64  ERCIACKL--CEAVCPALAITIESDVREDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 120



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  +++
Sbjct: 64 ERCIACKLCEAVCPALAITIESD 86


>gi|83944109|ref|ZP_00956565.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family protein
           [Sulfitobacter sp. EE-36]
 gi|83844976|gb|EAP82857.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family protein
           [Sulfitobacter sp. EE-36]
          Length = 535

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +CI C    CV VCP+     EG+        ECI C +C   C     K     GL
Sbjct: 286 VLGDCIDCN--ACVAVCPMGIDIREGQQM------ECITCALCIDACDDVMAKIGRPRGL 337

Query: 64  ELWLKINSE 72
             +L ++ E
Sbjct: 338 IDYLALDDE 346


>gi|296412563|ref|XP_002835993.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629791|emb|CAZ80150.1| unnamed protein product [Tuber melanosporum]
          Length = 568

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV      C           I    CI CG+C  +CP  A
Sbjct: 11 VSTDKCKPKKCR-QECKKSCPVVRTGRLCIEVTPESRIAFISEQLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|289578798|ref|YP_003477425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|297545019|ref|YP_003677321.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528511|gb|ADD02863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter italicus Ab9]
 gi|296842794|gb|ADH61310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 123

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CILC    C  VCP +C      E      P EC+ CG C   CP  ++K + E
Sbjct: 41 DKCILCG--ICQRVCPSNCIQVNRKEGKWVFQPFECVICGACVENCPTKSLKMEAE 94



 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 24 DCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
          + F      +    D+CI CG+C+  CP + I+ + + G  ++
Sbjct: 27 EPFERARGHIKNDIDKCILCGICQRVCPSNCIQVNRKEGKWVF 69


>gi|254787399|ref|YP_003074828.1| glutamate synthase (NADPH) small subunit [Teredinibacter turnerae
           T7901]
 gi|237686554|gb|ACR13818.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Teredinibacter turnerae T7901]
          Length = 542

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--GENFLAIHPDECIDCGVCEPECPVDAIK 56
           NC  C    C   CP     +     F  I    C  CG C  +CP  AI 
Sbjct: 489 NCFECDG--CYGACPEHAIIKLGSGRFYQIDYSRCTGCGACTTQCPTAAIH 537


>gi|239907309|ref|YP_002954050.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239797175|dbj|BAH76164.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 223

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD 53
           C  C+   C+ VCP      E +  +   P  C   G C   CP  
Sbjct: 95  CNQCREAPCLAVCPNGAVRREADGIVVTDPKRCTGAGACVTACPYG 140


>gi|209550517|ref|YP_002282434.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
 gi|209536273|gb|ACI56208.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhizobium
          leguminosarum bv. trifolii WSM2304]
          Length = 104

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 8/59 (13%)

Query: 5  VTENC---ILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
          VTE C          C E CP +         G     I    C  C  C   CPV AI
Sbjct: 34 VTEACLSRRGVACRSCDESCPENAIRFRPRIGGPFLPEIDETLCTGCDACLAICPVGAI 92


>gi|168207991|ref|ZP_02633996.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170660717|gb|EDT13400.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 273

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP +      N   I  ++C  CG+C  +CP  AI
Sbjct: 219 CIGCKL--CEKNCPSEAIRIENNLAIIDYEKCTSCGICVSKCPKKAI 263



 Score = 38.2 bits (88), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAI------HPDE---------CIDCGVCE 47
           V +  C+ CK   CV  CP +      EN   I         +         CI C +CE
Sbjct: 169 VDSSKCVACK--ACVSACPQNLIAIIKENQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCE 226

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP +AI+ +    +  + K
Sbjct: 227 KNCPSEAIRIENNLAIIDYEK 247



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 13/41 (31%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             C + C             +   +C+ C  C   CP + I
Sbjct: 149 GSCKDACKFGAISIINGIAKVDSSKCVACKACVSACPQNLI 189


>gi|218780367|ref|YP_002431685.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761751|gb|ACL04217.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 172

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 8   NCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C  C+   C+  CP       E +  + +    C+ C  C   CP  A +
Sbjct: 58  PCYHCEKPWCIPACPTGAMQRRESDGIVYVDESLCVGCKACISACPWGAPQ 108


>gi|161617158|ref|YP_001591123.1| hypothetical protein SPAB_04998 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551481|ref|ZP_02345236.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168232962|ref|ZP_02658020.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237653|ref|ZP_02662711.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194442665|ref|YP_002043256.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194471033|ref|ZP_03077017.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737000|ref|YP_002116958.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248304|ref|YP_002148958.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|200388365|ref|ZP_03214977.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205354383|ref|YP_002228184.1| formate dehydrogenase-O subunit beta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859227|ref|YP_002245878.1| formate dehydrogenase-O subunit beta [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|161366522|gb|ABX70290.1| hypothetical protein SPAB_04998 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401328|gb|ACF61550.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194457397|gb|EDX46236.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712502|gb|ACF91723.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197212007|gb|ACH49404.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197289330|gb|EDY28695.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199605463|gb|EDZ04008.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205274164|emb|CAR39179.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323700|gb|EDZ11539.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205332800|gb|EDZ19564.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|206711030|emb|CAR35399.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326629511|gb|EGE35854.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|161505472|ref|YP_001572584.1| hypothetical protein SARI_03631 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866819|gb|ABX23442.1| hypothetical protein SARI_03631 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155


>gi|297619109|ref|YP_003707214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378086|gb|ADI36241.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 654

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 20/74 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCGVCEP 48
           E C  C    C EVCP+    E                        I  + CIDCG+C  
Sbjct: 244 EKCTGCG--SCAEVCPISVPNEFDMGLGMRKAIYKPFPQAVPAKYTIDMEHCIDCGLCSR 301

Query: 49  ECPVDAIKPDTEPG 62
            C   AI  + +P 
Sbjct: 302 VCGPQAIDYNQKPE 315



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ C  C    CV+ CP         +G+  + +    C  CG C   CP  A++     
Sbjct: 581 SDICGACG--ICVQQCPYGAPRFVEKDGKLSVEVISALCKGCGTCAAGCPSGALEQSHFK 638

Query: 62  GLELWLKI 69
             +++ +I
Sbjct: 639 TGQIYHQI 646



 Score = 34.7 bits (79), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           I  D C  CG+C  +CP  A +   + G
Sbjct: 579 IDSDICGACGICVQQCPYGAPRFVEKDG 606


>gi|114797401|ref|YP_759946.1| cytochrome c oxidase accessory protein FixG [Hyphomonas neptunium
           ATCC 15444]
 gi|114737575|gb|ABI75700.1| cytochrome c oxidase accessory protein FixG [Hyphomonas neptunium
           ATCC 15444]
          Length = 490

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 16/62 (25%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI CK   CV+VCP+         L     ECI C +C   C         P   I  D
Sbjct: 274 DCIDCKQ--CVQVCPMGIDIRDGAQL-----ECIHCALCIDACDDMMKKVGRPTGLIAYD 326

Query: 59  TE 60
           T+
Sbjct: 327 TD 328


>gi|46579100|ref|YP_009908.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448513|gb|AAS95167.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 162

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C    C + CP   + + +     +    CI CG C   CPVDA+  D E GL
Sbjct: 46  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 101



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CI C    C E CPVD  + +GE  L   P  CI CG C   CP + I+   +P
Sbjct: 78  CIRCG--RCAEACPVDAVHMDGETGL---PYVCIHCGRCVAFCPHECIELVDQP 126


>gi|16130627|ref|NP_417200.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89109507|ref|AP_003287.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082296|ref|YP_001731616.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238901857|ref|YP_002927653.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BW2952]
 gi|256024773|ref|ZP_05438638.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia sp.
           4_1_40B]
 gi|300947002|ref|ZP_07161228.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|300954960|ref|ZP_07167372.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|301027397|ref|ZP_07190736.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|301645300|ref|ZP_07245250.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|307139407|ref|ZP_07498763.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           H736]
 gi|331643404|ref|ZP_08344535.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H736]
 gi|123920|sp|P16432|HYCF_ECOLI RecName: Full=Formate hydrogenlyase subunit 6; Short=FHL subunit 6;
           AltName: Full=Hydrogenase-3 component F
 gi|41685|emb|CAA35551.1| hycF [Escherichia coli]
 gi|882613|gb|AAA69230.1| formate hydrogenlyase subunit 6 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85675541|dbj|BAE76797.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K12 substr. W3110]
 gi|169890131|gb|ACB03838.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238861136|gb|ACR63134.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BW2952]
 gi|260448230|gb|ACX38652.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|299879311|gb|EFI87522.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|300318095|gb|EFJ67879.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|300453389|gb|EFK17009.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|301076418|gb|EFK91224.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|315137327|dbj|BAJ44486.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           DH1]
 gi|315615108|gb|EFU95745.1| formate hydrogenlyase subunit 6 [Escherichia coli 3431]
 gi|331036875|gb|EGI09099.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H736]
 gi|1093499|prf||2104213F hycF gene
          Length = 180

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|15679144|ref|NP_276261.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|41017307|sp|Q50784|MVHB_METTH RecName: Full=Polyferredoxin protein mvhB
 gi|2622237|gb|AAB85622.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 412

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +C+ C    CV  CPVD          + I  D CI CGVC   CP +A+ 
Sbjct: 145 DCVGCG--MCVPECPVDAITLDKVGGVIEIDEDTCIKCGVCAQTCPWNAVY 193



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C    CVE CP D       N     P  C  CG+CE  CPVDAI  + E G
Sbjct: 214 DACIGCN--TCVEACPGDFIVPRTSNLTVELPAICTACGLCEQLCPVDAIDLEVELG 268



 Score = 41.7 bits (97), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 20/64 (31%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C    CV++CPV                  EG  F+A    +C+ CG+C PECPVDA
Sbjct: 107 CVMC--QKCVDICPVGVIGVEGIKEPAKVELEIEGPIFIA----DCVGCGMCVPECPVDA 160

Query: 55  IKPD 58
           I  D
Sbjct: 161 ITLD 164



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C + CP +  Y                 +  D CI C  C   CP D I 
Sbjct: 175 DTCIKCGV--CAQTCPWNAVYISGRKPEKRAKEIKKFELDEDACIGCNTCVEACPGDFIV 232

Query: 57  P 57
           P
Sbjct: 233 P 233



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 11/54 (20%)

Query: 9  CILCKH-TDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECP 51
          C +C     CV++CP                 +  +  +PD+C +CG C   CP
Sbjct: 34 CDICGGEPKCVDICPTGALKLEDLVVDEAGNTQGRIVFNPDKCNECGDCVEVCP 87



 Score = 34.0 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C+E CP D     +  + +    CI C  C P CP  A
Sbjct: 366 CDQCGD--CIEACPYDMLKLTDEKVPL-KGFCILCDQCIPACPKGA 408



 Score = 33.6 bits (76), Expect = 9.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ ++CI CG C+  CP  AI+
Sbjct: 1  MIIVNKEDCIRCGACQGTCPTAAIE 25


>gi|254238460|ref|ZP_04931783.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa C3719]
 gi|126170391|gb|EAZ55902.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa C3719]
          Length = 309

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D+CI CG C   CP D
Sbjct: 94  DGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFD 142


>gi|194337674|ref|YP_002019468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310151|gb|ACF44851.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 229

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 3   YVVTEN-CILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PE 49
           Y + EN C+ C    C++ CP  V            EG     I  D CI C  C    E
Sbjct: 131 YFILENLCVGCGL--CLDKCPPKVQAIGYKFYGDVQEGGFRCYIDQDACISCSACFSTDE 188

Query: 50  CPVDAIKPDTEPGL 63
           CP  A+      G 
Sbjct: 189 CPSGALLEVLPDGE 202


>gi|116052959|ref|YP_793276.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115588180|gb|ABJ14195.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 309

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D+CI CG C   CP D
Sbjct: 94  DGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFD 142


>gi|15600005|ref|NP_253499.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa PAO1]
 gi|107103908|ref|ZP_01367826.1| hypothetical protein PaerPA_01004979 [Pseudomonas aeruginosa PACS2]
 gi|218893904|ref|YP_002442773.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa LESB58]
 gi|254244289|ref|ZP_04937611.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa 2192]
 gi|9951079|gb|AAG08197.1|AE004894_3 nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa PAO1]
 gi|126197667|gb|EAZ61730.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa 2192]
 gi|218774132|emb|CAW29949.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           aeruginosa LESB58]
          Length = 309

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   + D+CI CG C   CP D
Sbjct: 94  DGCMHCAEPGCLKACPSPGAIVKYANGIVDFNQDKCIGCGYCITGCPFD 142


>gi|320353242|ref|YP_004194581.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM
           2032]
 gi|320121744|gb|ADW17290.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM
           2032]
          Length = 301

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    C  +C      E      + P  C  CGVC   CP  AI    +   E +
Sbjct: 66  DLCTGCG--TCRSLCRFGAITEA---FEVDPIRCEGCGVCVDFCPEAAIDFPVQRCGEWY 120

Query: 67  L 67
           +
Sbjct: 121 I 121



 Score = 40.9 bits (95), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 27 YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + G +   I+PD C  CG C   C   AI    E  
Sbjct: 55 FMGGSKAVINPDLCTGCGTCRSLCRFGAITEAFEVD 90


>gi|312794392|ref|YP_004027315.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181532|gb|ADQ41702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 373

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+ C    CV+ C        E     I  ++C+ CG C   C  +A     +    +  
Sbjct: 196 CVGCG--MCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFEAATVKWDEAASIAS 253

Query: 68  KINSEYA 74
           +  +EYA
Sbjct: 254 EKIAEYA 260


>gi|303243584|ref|ZP_07329926.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486145|gb|EFL49067.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 154

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CILC   +C+E CP +  ++  + + I  ++C+ CG C   CPV+A+K
Sbjct: 99  CILCG--ECLE-CPYNAIFKNGHLIEIDNNKCMLCGDCIAICPVNALK 143


>gi|291550300|emb|CBL26562.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           torques L2-14]
          Length = 265

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
               CV  CP D  +  +    +  + C  CG C   CP   I+       + +++ NS 
Sbjct: 146 GFGSCVAACPFDAIHVVDGIAVVDKEACKACGKCIAACPKHLIE-LIPYEQKTFVRCNSN 204



 Score = 42.4 bits (99), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           CI C    C + C             I  D+C +CGVC  +CP
Sbjct: 218 CIGC--RLCEKNCEAGAITVTNFLAHIDADKCTECGVCVEKCP 258


>gi|289191700|ref|YP_003457641.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938150|gb|ADC68905.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 654

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           YV    C  C    C EVCP++   E                    +   I  + CI+CG
Sbjct: 240 YVDETKCTGCGQ--CAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTIDKEHCIECG 297

Query: 45  VCEPECPVDAIKPDTEPGL 63
           +C   C   AI  + +P  
Sbjct: 298 LCAKVCGPKAIDFNQKPEF 316



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLA--IHPDECIDCGVCEPECPVDAIKP 57
             V  E C  C    CV+ CP       E +  L   +    C  CG C   CP  A++ 
Sbjct: 577 ATVNEEICGGCGV--CVKQCPYGAPRLVEKDGRLVCEVIAALCKGCGTCAAGCPSGALEQ 634

Query: 58  DTEPGLELWLKI 69
           +    ++L+ +I
Sbjct: 635 NHFKTIQLYKQI 646


>gi|210623816|ref|ZP_03294065.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275]
 gi|210153311|gb|EEA84317.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275]
          Length = 266

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +  C  C    C  VCPV    + EN   +   +CI C  C   CP +A
Sbjct: 192 SSACNGCGV--CATVCPVGAISK-ENPKKVDKSKCISCMRCIKACPSNA 237



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 39  ECIDCGVCEPECPVDAIKPDTE 60
            C  CGVC   CPV AI  +  
Sbjct: 194 ACNGCGVCATVCPVGAISKENP 215


>gi|121281900|gb|ABM53531.1| putative NADH-ubiquinone oxidoreductase [uncultured bacterium
           CBNPD1 BAC clone 543]
          Length = 185

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 14/60 (23%)

Query: 9   CILCKHTDCVEVCPVDCFY------------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C   CP +C +            +      I    CI CG+CE  CPVDAI+
Sbjct: 93  CVAC--FMCATACPANCIHIVAEESPWEDREKYPKQFDIDELRCIYCGMCEEACPVDAIE 150


>gi|220915474|ref|YP_002490778.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953328|gb|ACL63712.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 640

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 21/72 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE----NFLAI---HPDECID----------CGVCE 47
           +T  C  C    C   CPV+    GE    N + I     D+C            CG C 
Sbjct: 382 ITRMCANCD--RCARACPVNSVPMGEPTVENGVKIWQVDKDKCTRFRTGNLNGNMCGACL 439

Query: 48  PECPVDAIKPDT 59
             CP +  KPDT
Sbjct: 440 AVCPYN--KPDT 449


>gi|197120761|ref|YP_002132712.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Anaeromyxobacter sp.
           K]
 gi|196170610|gb|ACG71583.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           sp. K]
          Length = 640

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 21/72 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGE----NFLAI---HPDECID----------CGVCE 47
           +T  C  C    C   CPV+    GE    N + I     D+C            CG C 
Sbjct: 382 ITRMCANCD--RCARACPVNSVPMGEPTVENGVKIWQVDKDKCTRFRTGNLNGNMCGACL 439

Query: 48  PECPVDAIKPDT 59
             CP +  KPDT
Sbjct: 440 AVCPYN--KPDT 449


>gi|94266345|ref|ZP_01290046.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93453059|gb|EAT03541.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 785

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C  CK   C  +CP       E      I+   C  CG C   CP+ AI
Sbjct: 720 CTGCK--ICRNICPYRAIGFDEEKQVAVINRVLCRGCGTCAAACPLTAI 766



 Score = 41.3 bits (96), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-CFYEG--------------ENFLAIHPDECI------ 41
           +V    CI C   +C+E CP +    EG               N   I PD C+      
Sbjct: 340 FVDLGRCIGCG--ECIEACPAESAGVEGGKCKAIDFAVPGALPNVPKIDPDLCLRGGSDP 397

Query: 42  DCGVCEPECPVD 53
           +C +C+  CP+ 
Sbjct: 398 ECRLCQTACPMG 409


>gi|59711970|ref|YP_204746.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114]
 gi|59480071|gb|AAW85858.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114]
          Length = 566

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 17  CVEVCPVDCFY-EGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CV+ CP      EG +     + I+P  C   G C   CP +AI        +
Sbjct: 200 CVDACPAGALTSEGSDQTGHHIQINPYLCQGVGTCATACPTEAISYALPEAEK 252



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T++C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 430 TKDCTLCMG--CVAVCPTRALHSDPDSPTLKFIEQDCVQCGLCVSACP 475



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 13/76 (17%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
             +  ++P+ C         C  C   CP  A+  +        ++IN           T
Sbjct: 177 PKYFRLNPELCAHSSRGVKGCERCVDACPAGALTSEGSDQTGHHIQINPYLCQGVGTCAT 236

Query: 83  KKE------SLPSAAK 92
                    +LP A K
Sbjct: 237 ACPTEAISYALPEAEK 252


>gi|39998523|ref|NP_954474.1| NADH dehydrogenase subunit I [Geobacter sulfurreducens PCA]
 gi|81700840|sp|Q746T4|NUOI2_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|39985470|gb|AAR36824.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens PCA]
 gi|298507467|gb|ADI86190.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens KN400]
          Length = 176

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 12/61 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
            E C+ C    C   CPVDC      EGE          I+   CI CG+C   CP  AI
Sbjct: 54  GERCVACYL--CSAACPVDCISMEAAEGEEGRRYARWFRINFSRCIFCGLCAEACPTLAI 111

Query: 56  K 56
           +
Sbjct: 112 Q 112


>gi|320178009|gb|EFW52991.1| Pyruvate-flavodoxin oxidoreductase [Shigella boydii ATCC 9905]
          Length = 1174

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 32/113 (28%), Gaps = 37/113 (32%)

Query: 7   ENCILCKHTDCVEVCP----------VDCFYEGENFLA-----------------IHPDE 39
           E C  C H  CV  CP           +        L                  + P++
Sbjct: 687 ELCTQCNH--CVAACPHSTIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPED 744

Query: 40  CIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           CI C +C   CP          AI   +        KIN ++    P I   K
Sbjct: 745 CIGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSK 797


>gi|319944436|ref|ZP_08018710.1| formate dehydrogenase [Lautropia mirabilis ATCC 51599]
 gi|319742397|gb|EFV94810.1| formate dehydrogenase [Lautropia mirabilis ATCC 51599]
          Length = 332

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +   H ++CI CG C   CP +
Sbjct: 109 DGCMHCAEPGCLKACPSPGAIVQYTNGIVDFHEEKCIGCGYCITGCPFN 157


>gi|300925913|ref|ZP_07141748.1| formate dehydrogenase, beta subunit [Escherichia coli MS 182-1]
 gi|300948136|ref|ZP_07162268.1| formate dehydrogenase, beta subunit [Escherichia coli MS 116-1]
 gi|300976503|ref|ZP_07173486.1| formate dehydrogenase, beta subunit [Escherichia coli MS 45-1]
 gi|301046705|ref|ZP_07193831.1| formate dehydrogenase, beta subunit [Escherichia coli MS 185-1]
 gi|301648473|ref|ZP_07248202.1| formate dehydrogenase, beta subunit [Escherichia coli MS 146-1]
 gi|300301344|gb|EFJ57729.1| formate dehydrogenase, beta subunit [Escherichia coli MS 185-1]
 gi|300410075|gb|EFJ93613.1| formate dehydrogenase, beta subunit [Escherichia coli MS 45-1]
 gi|300418017|gb|EFK01328.1| formate dehydrogenase, beta subunit [Escherichia coli MS 182-1]
 gi|300452323|gb|EFK15943.1| formate dehydrogenase, beta subunit [Escherichia coli MS 116-1]
 gi|301073469|gb|EFK88275.1| formate dehydrogenase, beta subunit [Escherichia coli MS 146-1]
          Length = 300

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|293603927|ref|ZP_06686342.1| NADH-quinone oxidoreductase subunit I [Achromobacter piechaudii
           ATCC 43553]
 gi|292817764|gb|EFF76830.1| NADH-quinone oxidoreductase subunit I [Achromobacter piechaudii
           ATCC 43553]
          Length = 162

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESDQREDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRED 87


>gi|290953109|ref|ZP_06557730.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313637|ref|ZP_06804221.1| electron transport complex, RnfABCDGE type, B subunit [Francisella
           tularensis subsp. holarctica URFT1]
          Length = 196

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|258404410|ref|YP_003197152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796637|gb|ACV67574.1| molybdopterin oxidoreductase, ferredoxin subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 258

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 8   NCILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPV 52
            C+ C +  C  VCPV       EG     I+P  CI C  C   CP 
Sbjct: 76  PCMQCGNPSCSTVCPVIATTKDEEGGIVSQIYP-RCIGCRYCMAACPY 122



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 32 FLAIHPDECIDCGVCEPECPVD 53
           + I  D+C  CG C   C  +
Sbjct: 14 GMVIDIDKCTGCGACMVACEAE 35


>gi|160940739|ref|ZP_02088081.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436259|gb|EDP14026.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC
          BAA-613]
          Length = 677

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV  C V      +    I PD+CI CG C   CP  A
Sbjct: 13 CKHC--YKCVRYCGVKAIQVKDERAVIMPDKCILCGHCLKICPQSA 56


>gi|152991554|ref|YP_001357276.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
 gi|151423415|dbj|BAF70919.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
          Length = 346

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          T+C+++CP + F+     L++   +C +CGVC   CP +A+  +
Sbjct: 28 TECMDICPKEAFFFDRGRLSLDAQKCTNCGVCLGVCPSEALYLE 71



 Score = 45.5 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           + +NC  C+   CV+ CP    +  +   AI      CIDC +C   C VDA+K   +  
Sbjct: 232 IDQNCTNCRD--CVQFCPTGALFYAKEGTAIWFMSGRCIDCDICNDICKVDAVKNKEQID 289

Query: 63  LELW 66
           +  W
Sbjct: 290 IVSW 293


>gi|149194115|ref|ZP_01871213.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Caminibacter
           mediatlanticus TB-2]
 gi|149136068|gb|EDM24546.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Caminibacter
           mediatlanticus TB-2]
          Length = 545

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIK 56
           C LC    C  VC    F   E    I     C DCG CE  CP   I+
Sbjct: 420 CTLC--MSCATVCNAGAFIADEKGALIFDATYCTDCGYCEVACPEKCIE 466



 Score = 44.0 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 15  TDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
            +C +VCP +   + +    L     +C  CG C   CPV A
Sbjct: 208 GNCADVCPTNAILKDDESKELIFSHIDCDGCGGCVSVCPVGA 249



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 43  CGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           CG C   CP +AI  D E    ++  I+ +
Sbjct: 207 CGNCADVCPTNAILKDDESKELIFSHIDCD 236


>gi|119896807|ref|YP_932020.1| electron transport complex protein RnfB [Azoarcus sp. BH72]
 gi|119669220|emb|CAL93133.1| probable electron transport complex protein RnfB [Azoarcus sp.
           BH72]
          Length = 175

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK-PDTEP 61
           V  E CI C  T C + CP D        +  +  D C  C  CE  CP  AI       
Sbjct: 105 VTEEICIGC--TKCYKSCPTDAILGAVKQVHTVIRDACTGCAKCEDVCPTGAITLSPIPV 162

Query: 62  GLELWL 67
             + W+
Sbjct: 163 TQQSWV 168


>gi|84490257|ref|YP_448489.1| HdrA1 [Methanosphaera stadtmanae DSM 3091]
 gi|84373576|gb|ABC57846.1| HdrA1 [Methanosphaera stadtmanae DSM 3091]
          Length = 649

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC---FYEGENFL---------------AIHPDECIDCG 44
           +V    C  C    C EVCP++    F EG   +                I  D CI C 
Sbjct: 243 FVDEVTCTGCGV--CQEVCPIEMPNYFDEGTGMVKAAYIPFPQAVPLVATIDDDYCIGCK 300

Query: 45  VCEPECPVDAIKPDTEP 61
           +C+  C + AI  + EP
Sbjct: 301 LCDKACEIGAIDHEQEP 317



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +NC  C+   CVE+CP       +    ++   C  CG C   CP  A+        ++ 
Sbjct: 584 DNCGGCE--ICVELCPFKALSIVDGKCEVNIALCKGCGTCVGACPTGALDQAHFRDEQIL 641

Query: 67  LKINSEY 73
            +I + +
Sbjct: 642 AQIEAAF 648


>gi|148254249|ref|YP_001238834.1| nitrogen fixation protein [Bradyrhizobium sp. BTAi1]
 gi|146406422|gb|ABQ34928.1| nitrogen fixation protein [Bradyrhizobium sp. BTAi1]
          Length = 488

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV VCP      +G         +CI CG+C   C
Sbjct: 274 DCIDCKQ--CVAVCPTGIDIRDGAQM------DCIQCGLCIDAC 309


>gi|89896158|ref|YP_519645.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219670574|ref|YP_002461009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89335606|dbj|BAE85201.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|219540834|gb|ACL22573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 182

 Score = 47.5 bits (112), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           +C  C   +C  VCP   + +  + +  I  + C  C  C   CP  A + D
Sbjct: 53  SCNHCSSPECFRVCPEHAYIKRRDGIVLIDSNRCAGCQTCVGACPYGAPQFD 104


>gi|302391321|ref|YP_003827141.1| electron transport complex, RnfABCDGE type, C subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203398|gb|ADL12076.1| electron transport complex, RnfABCDGE type, C subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 442

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 18/61 (29%)

Query: 6   TENCILCKHTDCVEVCP-------------VDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           + NCI C    CV+VCP             VD   + +++  +    CI+CG C   CP 
Sbjct: 364 SSNCIRC--ARCVDVCPAFLMPVTLSKVAQVDMVEKLDDYNVMD---CIECGSCSYVCPA 418

Query: 53  D 53
           +
Sbjct: 419 N 419


>gi|302387080|ref|YP_003822902.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein
           [Clostridium saccharolyticum WM1]
 gi|302197708|gb|ADL05279.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein
           [Clostridium saccharolyticum WM1]
          Length = 416

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           CI C+   C EVC             I    C  CG C+  CP +AI    E   +++L
Sbjct: 67  CINCE--ICEEVCKFGAIKN----CTIDLFSCEGCGACKVVCPQNAISLVEEKTADVFL 119



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIK 56
          G     I+   CI+C +CE  C   AIK
Sbjct: 56 GGKKARINRSLCINCEICEEVCKFGAIK 83


>gi|291460671|ref|ZP_06600061.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416630|gb|EFE90349.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 485

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 14/77 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVDAI 55
           T  CI C    CV  CP +             +   F  ++  ECI+CG C   CP    
Sbjct: 393 TTACINCG--RCVSACPENLMPTLMMQSALRKDTARFTKLYGMECIECGCCSYVCPAK-- 448

Query: 56  KPDTEPGLELWLKINSE 72
           +P T+   E+  ++N+E
Sbjct: 449 RPLTQGFKEMKRRVNAE 465


>gi|238763390|ref|ZP_04624353.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia kristensenii
           ATCC 33638]
 gi|238763471|ref|ZP_04624433.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia kristensenii
           ATCC 33638]
 gi|238698253|gb|EEP91008.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia kristensenii
           ATCC 33638]
 gi|238698334|gb|EEP91088.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia kristensenii
           ATCC 33638]
          Length = 323

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 38.6 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKEAMKE 196


>gi|289581689|ref|YP_003480155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
 gi|289531242|gb|ADD05593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
          Length = 159

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGENFLA-------IHPDECIDCGVCEPECPVDAIKP 57
           + CI      C+E CPVD F   E              H  +CIDC +C   CPVDAI  
Sbjct: 96  DLCIA--DGACLEDCPVDVFEWVETPGHPESEEKADPTHEAQCIDCMLCVDVCPVDAIDV 153

Query: 58  D 58
           D
Sbjct: 154 D 154


>gi|213408048|ref|XP_002174795.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus
          yFS275]
 gi|212002842|gb|EEB08502.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus
          yFS275]
          Length = 594

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+EV P D          I    CI CG+C  +CP  AI
Sbjct: 39 CIEVTPNDRIA------FISETLCIGCGICVKKCPFSAI 71


>gi|168700377|ref|ZP_02732654.1| NADH-quinone oxidoreductase, chain I [Gemmata obscuriglobus UQM
           2246]
          Length = 188

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 18/64 (28%)

Query: 9   CILCKHTDCVEVCPVDCF------------YEG----ENFLAIHPDECIDCGVCEPECPV 52
           C+ C    C   CP  C              +G         I    CI CG+CE  CPV
Sbjct: 74  CVAC--YMCATACPAHCIDIVAAPAPADWQKDGREKYPETFVIDELRCIYCGMCEEACPV 131

Query: 53  DAIK 56
           DAI+
Sbjct: 132 DAIE 135



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 15/44 (34%)

Query: 39  ECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
           +C+ C +C   CP   I     P    W K   E   +   I  
Sbjct: 73  KCVACYMCATACPAHCIDIVAAPAPADWQKDGREKYPETFVIDE 116


>gi|167770282|ref|ZP_02442335.1| hypothetical protein ANACOL_01625 [Anaerotruncus colihominis DSM
          17241]
 gi|167667604|gb|EDS11734.1| hypothetical protein ANACOL_01625 [Anaerotruncus colihominis DSM
          17241]
          Length = 149

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 8  NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C    CV  CPV C  +             CI C  C   CP  A +   +  
Sbjct: 36 ACAHCDDAPCVMACPVGCLQKDYDTGMTVYDNTRCIGCRSCGMACPFGAPRYLPDSE 92


>gi|94267644|ref|ZP_01290947.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93451914|gb|EAT02640.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 450

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C+ C   +CV +CP D     +    +  + C+ CG+C   CP  AI+     
Sbjct: 273 ATVQNDYCVKCL--NCVRLCPYDAPRI-DRTARVPAEHCLACGLCYGACPTGAIRLQNNS 329

Query: 62  GLEL 65
             +L
Sbjct: 330 PEQL 333


>gi|78357189|ref|YP_388638.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219594|gb|ABB38943.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 146

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           ++C+ C    C  +CPVD  +       +    + C  CG+C   CPV A+  + E G
Sbjct: 89  DSCMHCG--MCTAICPVDALHMDWVARTVTFDTERCTACGLCTKVCPVRAMHVEVENG 144



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 36  HPDECIDCGVCEPECPVDAIKPD 58
             D C+ CG+C   CPVDA+  D
Sbjct: 87  DEDSCMHCGMCTAICPVDALHMD 109


>gi|148262695|ref|YP_001229401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396195|gb|ABQ24828.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 197

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           +C  C   DC+  CP       +    + +    C  C +C   CP DAI
Sbjct: 57  SCRHCDPADCLNACPSGAISRDQESGAVLLDASLCKACAMCAMVCPFDAI 106


>gi|127512995|ref|YP_001094192.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           loihica PV-4]
 gi|166225086|sp|A3QEN5|RNFB_SHELP RecName: Full=Electron transport complex protein rnfB
 gi|126638290|gb|ABO23933.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           loihica PV-4]
          Length = 189

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD     G+    +  D C  C +C   CPVD I
Sbjct: 107 AFIREAECIGC--TKCIQACPVDAILGTGKQMHTVITDYCTGCDLCVEPCPVDCI 159


>gi|115352330|ref|YP_774169.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD]
 gi|161524212|ref|YP_001579224.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616]
 gi|170698117|ref|ZP_02889197.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           IOP40-10]
 gi|171316311|ref|ZP_02905532.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5]
 gi|172061201|ref|YP_001808853.1| NADH dehydrogenase subunit I [Burkholderia ambifaria MC40-6]
 gi|189351031|ref|YP_001946659.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616]
 gi|221199664|ref|ZP_03572708.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M]
 gi|221205436|ref|ZP_03578451.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2]
 gi|221211743|ref|ZP_03584722.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1]
 gi|122322649|sp|Q0BDD8|NUOI_BURCM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737384|sp|B1YTP9|NUOI_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737387|sp|A9AFZ5|NUOI_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115282318|gb|ABI87835.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD]
 gi|160341641|gb|ABX14727.1| NADH-quinone oxidoreductase, chain I [Burkholderia multivorans ATCC
           17616]
 gi|170136975|gb|EDT05223.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           IOP40-10]
 gi|171098537|gb|EDT43338.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5]
 gi|171993718|gb|ACB64637.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           MC40-6]
 gi|189335053|dbj|BAG44123.1| NADH dehydrogenase I chain I [Burkholderia multivorans ATCC 17616]
 gi|221169104|gb|EEE01572.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1]
 gi|221174274|gb|EEE06706.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2]
 gi|221180949|gb|EEE13352.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M]
          Length = 162

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|67924432|ref|ZP_00517858.1| Helix-turn-helix motif:4Fe-4S ferredoxin, iron-sulfur binding
          [Crocosphaera watsonii WH 8501]
 gi|67853721|gb|EAM49054.1| Helix-turn-helix motif:4Fe-4S ferredoxin, iron-sulfur binding
          [Crocosphaera watsonii WH 8501]
          Length = 533

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M+Y ++E+C  C    C   CP D          I   +C +C G      C  +CP+ +
Sbjct: 1  MSYTISESCPTCN--SCRIDCPTDAIQIENGEYWIDQKKCNNCEGYYEEPQCIVQCPISS 58

Query: 55 IKP 57
            P
Sbjct: 59 PSP 61


>gi|302872143|ref|YP_003840779.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575002|gb|ADL42793.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 598

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           + + +NC  CK    V  CP     E EN  + I    C  CG+C+  C   AI+
Sbjct: 540 FKINQNCSNCKVCLQVTGCP--ALNEDENGNIFIDSTLCNGCGLCKSFCRYSAIE 592


>gi|295094493|emb|CBK83584.1| Coenzyme F420-reducing hydrogenase, beta subunit [Coprococcus sp.
           ART55/1]
          Length = 856

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 6   TENCIL----CKHTDCVEVCPVDCF---YEGENFL--AIHPDECIDCGVCEPECP 51
           T  CI     C    C  VCPV+     Y+ E FL   +   +C +CG+C   CP
Sbjct: 116 TVGCIHPDYCCGCGACYSVCPVNAISMKYDSEGFLAPVVDRSKCTNCGLCRKICP 170



 Score = 44.4 bits (104), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           IHPD C  CG C   CPV+AI
Sbjct: 120 IHPDYCCGCGACYSVCPVNAI 140


>gi|238750253|ref|ZP_04611755.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia rohdei ATCC
           43380]
 gi|238711486|gb|EEQ03702.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia rohdei ATCC
           43380]
          Length = 321

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 155



 Score = 38.6 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 184 IHFGTKESMKE 194


>gi|215489223|ref|YP_002331654.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312969362|ref|ZP_07783564.1| formate dehydrogenase, beta subunit [Escherichia coli 2362-75]
 gi|215267295|emb|CAS11744.1| formate dehydrogenase-O, Fe-S subunit FdoH [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312285909|gb|EFR13827.1| formate dehydrogenase, beta subunit [Escherichia coli 2362-75]
          Length = 300

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYSNGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|94269811|ref|ZP_01291569.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93451066|gb|EAT02016.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 668

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
             V  + C+ C   +CV +CP D     +    +  + C+ CG+C   CP  AI+     
Sbjct: 491 ATVQNDYCVKCL--NCVRLCPYDAPRI-DRTARVPAEHCLACGLCYGACPTGAIRLQNNS 547

Query: 62  GLEL 65
             +L
Sbjct: 548 PEQL 551


>gi|89902033|ref|YP_524504.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346770|gb|ABD70973.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 697

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 11  LCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
            C  T C++VC             + ++P+ CI CG C   CP  A
Sbjct: 314 GC--TACIDVCSASAIESDRSRQQIKVNPNLCIGCGTCSTVCPTGA 357



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDA 54
           + C LC    CV  CP     +    L +      C+ CG+C   CP  A
Sbjct: 566 DACTLCL--SCVNACPASALQDNPQALELRLIEKNCVQCGLCVKTCPEQA 613



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP DAI  D +  L
Sbjct: 190 IDLDLCTRCNACLAVCPEDAIGLDYQVDL 218



 Score = 37.4 bits (86), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 33  LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           L I+ D C  C  C   CP  A++ + +      ++ N
Sbjct: 561 LVINKDACTLCLSCVNACPASALQDNPQALELRLIEKN 598



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGL 63
           + C  C    C+ VCP D          +    C     C   C V  AI    EP  
Sbjct: 193 DLCTRCN--ACLAVCPEDAIGLD---YQVDLSACQAHRACVKVCQVAGAIDFQREPEA 245


>gi|114319379|ref|YP_741062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225773|gb|ABI55572.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 428

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN----FLAIHPDECIDCGVCEPECPVDAI 55
           +++ C  C H  C  +CP       E+     L   P  CI CG+C+  CP  AI
Sbjct: 287 ISDAC--CNHRICAALCPTGALQPVEDEDGSGLDYDPLFCIRCGLCQQVCPEKAI 339



 Score = 43.6 bits (102), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C + CPVD          +  D C+ CG C   CP  AI
Sbjct: 49 RACSQACPVDALTATPKGPQLTGD-CVACGRCTAACPTGAI 88


>gi|118579075|ref|YP_900325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118580054|ref|YP_901304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118581586|ref|YP_902836.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|156633537|sp|A1ALP7|NUOI_PELPD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118501785|gb|ABK98267.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379]
 gi|118502764|gb|ABK99246.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379]
 gi|118504296|gb|ABL00779.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379]
          Length = 186

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 15/61 (24%)

Query: 9   CILCKHTDCVEVCPVDCFY-------------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           C+ C    C  VCP  C               +  +   I    CI CG C   CP DAI
Sbjct: 80  CVSCN--MCATVCPAYCIEIQSAADFNDPFHPKSPDRFEIDYSRCIFCGFCVEACPEDAI 137

Query: 56  K 56
           +
Sbjct: 138 R 138


>gi|239992865|ref|ZP_04713389.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Alteromonas
           macleodii ATCC 27126]
          Length = 467

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 266 DCIDCNL--CVQVCPTGIDIRNGLQY-----ECINCGACVDAC 301


>gi|225155272|ref|ZP_03723766.1| ferredoxin [Opitutaceae bacterium TAV2]
 gi|224804027|gb|EEG22256.1| ferredoxin [Opitutaceae bacterium TAV2]
          Length = 56

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          M+Y +T E C+ C    C   CP      G     I P++C+DCG C   CP  A  P
Sbjct: 1  MSYEITAEKCVACG--ACESDCPASAINPGTP-YRIDPEKCMDCGACADACPEGAPHP 55


>gi|117621207|ref|YP_855562.1| putative ferredoxin [Aeromonas hydrophila subsp. hydrophila ATCC
          7966]
 gi|117562614|gb|ABK39562.1| putative ferredoxin [Aeromonas hydrophila subsp. hydrophila ATCC
          7966]
          Length = 82

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P  C +C        C   CP+D 
Sbjct: 1  MALLITDKCINCD--MCDPECPNQAISLGEEIYEIDPSRCTECVGHYEKPTCISVCPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIWD 62


>gi|149734|gb|AAB02352.1| mvhB [Methanothermobacter thermautotrophicus]
          Length = 412

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCGVCEPECPVDAIK 56
           +C+ C    CV  CPVD          + I  D CI CGVC   CP +A+ 
Sbjct: 145 DCVGCG--MCVPECPVDAITLDKVGGVIEIDEDTCIKCGVCAQTCPWNAVY 193



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + CI C    CVE CP D       N     P  C  CG+CE  CPVDAI  + E G
Sbjct: 214 DACIGCN--TCVEACPGDFIVPRTSNLTVELPAICTACGLCEQLCPVDAIDLEVELG 268



 Score = 41.7 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 20/64 (31%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C    CV++CPV                  EG  F+A    +C+ CG+C PECPVDA
Sbjct: 107 CVMC--QKCVDICPVGVIGVEGIKEPAKVELEIEGPIFIA----DCVGCGMCVPECPVDA 160

Query: 55  IKPD 58
           I  D
Sbjct: 161 ITLD 164



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C + CP +  Y                 +  D CI C  C   CP D I 
Sbjct: 175 DTCIKCGV--CAQTCPWNAVYISGRKPEKRAKEIKKFELDEDACIGCNTCVEACPGDFIV 232

Query: 57  P 57
           P
Sbjct: 233 P 233



 Score = 34.7 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 11/54 (20%)

Query: 9  CILCKH-TDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECP 51
          C +C     CV++CP                 +  +  +PD+C +CG C   CP
Sbjct: 34 CDICGGEPKCVDICPTGALKLEDLVVDEAGNTQGRIVFNPDKCNECGDCVEVCP 87



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C+E CP D     +  + +    CI C  C P CP  A
Sbjct: 366 CDQCGD--CIEACPYDMLKLTDEKVPL-KGFCILCDQCIPACPKGA 408



 Score = 33.6 bits (76), Expect = 9.9,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ ++CI CG C+  CP  AI+
Sbjct: 1  MIIVNKEDCIRCGACQGTCPTAAIE 25


>gi|83590257|ref|YP_430266.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica
          ATCC 39073]
 gi|83573171|gb|ABC19723.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
          thermoacetica ATCC 39073]
          Length = 56

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            V  + C  C    C EVCP +     E  +   PDEC++CG C  ECP +AI  D
Sbjct: 3  ARVDEDKCTGCG--RCAEVCPAEAITLNEVAIV-DPDECLECGACVDECPNEAISLD 56


>gi|15922109|ref|NP_377778.1| ferredoxin [Sulfolobus tokodaii str. 7]
 gi|15622897|dbj|BAB66887.1| 89aa long hypothetical ferredoxin [Sulfolobus tokodaii str. 7]
          Length = 89

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
          V T+ CI CK   C   CP   +    +   I H + C++CG     CP  AIK     G
Sbjct: 23 VNTDICITCKDKPCTVSCPAGTYEAQPDGRIIAHYERCLECGGALVICPFGAIKFRFPEG 82

Query: 63 LELW 66
             +
Sbjct: 83 GISY 86


>gi|121998536|ref|YP_001003323.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1]
 gi|156633521|sp|A1WXV9|NUOI_HALHL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|121589941|gb|ABM62521.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1]
          Length = 163

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 62  ERCIACKL--CEAVCPALAITIDSHQRADGTRRTTRYDIDMFKCIYCGFCEESCPVDSI 118



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDT 59
          + CI C +CE  CP  AI  D+
Sbjct: 62 ERCIACKLCEAVCPALAITIDS 83


>gi|295697740|ref|YP_003590978.1| NADH-quinone oxidoreductase, chain I [Bacillus tusciae DSM 2912]
 gi|295413342|gb|ADG07834.1| NADH-quinone oxidoreductase, chain I [Bacillus tusciae DSM 2912]
          Length = 154

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGEN-FLAIHP-----DECIDCGVCEPECPVDAIK 56
           E CI+C    C  +CP  C       GE+  L +       + CI C +C   CP +AIK
Sbjct: 44  ERCIVCGQ--CARICPTSCISLSGTRGEDRKLHLDTFDISFEICILCDLCTEVCPTEAIK 101

Query: 57  PDTEPGLELW 66
              E  L  +
Sbjct: 102 MTDEFELAAY 111


>gi|291547384|emb|CBL20492.1| Electron transfer flavoprotein, alpha subunit [Ruminococcus sp.
          SR1/5]
          Length = 396

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD------TEPG 62
          C+LC    CVE CP        N + +  D C  CG+C   CP  AI+ +       +  
Sbjct: 11 CVLCGV--CVEKCPFGALTIEGNGIVVG-DACRMCGLCVRNCPEKAIRFEQKAKSFDKDK 67

Query: 63 LELWL 67
           + +L
Sbjct: 68 WKNFL 72


>gi|255524142|ref|ZP_05391102.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           carboxidivorans P7]
 gi|296186599|ref|ZP_06855001.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           carboxidivorans P7]
 gi|255512127|gb|EET88407.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           carboxidivorans P7]
 gi|296048636|gb|EFG88068.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           carboxidivorans P7]
          Length = 300

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
               CV+ CP D    GEN L  I  ++C  CG CE  CP   I+
Sbjct: 144 GFGTCVKNCPFDAMTLGENGLPIIDENKCTGCGKCETVCPKHVIE 188


>gi|237749584|ref|ZP_04580064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Oxalobacter formigenes OXCC13]
 gi|229380946|gb|EEO31037.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Oxalobacter formigenes OXCC13]
          Length = 82

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T  CI C    CV  CP +    G+    I PD+C +C        C+  CP+D 
Sbjct: 1  MALLITHECICCD--ICVPECPNEAITLGKKVCEIDPDKCTECVGHYPEPQCKQVCPMDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IVSD 62


>gi|168704240|ref|ZP_02736517.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 1156

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPV 52
           VV++   C+ C+   C +VCPV+      EG N    +   CI    C   CP 
Sbjct: 916 VVSQPLACVHCEAAPCEQVCPVNAAVHSPEGLNLQVYN--RCIGTRYCSNACPY 967


>gi|148643468|ref|YP_001273981.1| tungsten formylmethanofuran dehydrogenase, subunit E, FwdE
           [Methanobrevibacter smithii ATCC 35061]
 gi|288869596|ref|ZP_05975164.2| tungsten formylmethanofuran dehydrogenase, subunit H
           [Methanobrevibacter smithii DSM 2374]
 gi|89953727|gb|ABD83343.1| FwdE [Methanobrevibacter smithii]
 gi|148552485|gb|ABQ87613.1| tungsten formylmethanofuran dehydrogenase, subunit E, FwdE
           [Methanobrevibacter smithii ATCC 35061]
 gi|288861702|gb|EFC94000.1| tungsten formylmethanofuran dehydrogenase, subunit H
           [Methanobrevibacter smithii DSM 2374]
          Length = 153

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV ++CI C    CV +C +           +   +C  C +C+ ECP ++IK
Sbjct: 99  VVADSCIGCGL--CVSMCSMKAIKLESLKAHVDSIQCCGCQLCKDECPTNSIK 149



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
                 F A+  D CI CG+C   C + AIK ++
Sbjct: 90  ICNDREFEAVVADSCIGCGLCVSMCSMKAIKLES 123


>gi|73669582|ref|YP_305597.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
 gi|72396744|gb|AAZ71017.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
          Length = 128

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           E CI C    C+ VCP++ +   +++   +   +CI CGVC   CP  A+K
Sbjct: 77  EECIECG--ACISVCPMNVYSFDDSWNVLVDEKKCIQCGVCIKMCPHGALK 125



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDT 59
            +ECI+CG C   CP++    D 
Sbjct: 75 DEEECIECGACISVCPMNVYSFDD 98


>gi|83594052|ref|YP_427804.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum
          ATCC 11170]
 gi|83576966|gb|ABC23517.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum
          ATCC 11170]
          Length = 62

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +T  CI C    C   CP +    G+    I P +C +C        C P CPV+ 
Sbjct: 1  MALKITNECISCG--ACEPECPNEAISVGDQTFTIDPAKCTECEGFHDQPQCVPVCPVEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|68468947|ref|XP_721532.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
          albicans SC5314]
 gi|68469496|ref|XP_721261.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
          albicans SC5314]
 gi|46443170|gb|EAL02454.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
          albicans SC5314]
 gi|46443452|gb|EAL02734.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
          albicans SC5314]
 gi|238879189|gb|EEQ42827.1| ATP-binding cassette sub-family E member 1 [Candida albicans
          WO-1]
          Length = 622

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    CK  +C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 26 VSADRCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDA 84

Query: 55 I 55
          I
Sbjct: 85 I 85


>gi|319642948|ref|ZP_07997584.1| hypothetical protein HMPREF9011_03185 [Bacteroides sp. 3_1_40A]
 gi|317385496|gb|EFV66439.1| hypothetical protein HMPREF9011_03185 [Bacteroides sp. 3_1_40A]
          Length = 272

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TE CI CK   C +VCPV      +  +      C  C  C   CPV A++ 
Sbjct: 207 TEACIGCK--KCEKVCPVGNITVTDRPVW--GGNCTQCLACYHVCPVHAVEY 254



 Score = 35.1 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C  CE  CPV  I     P  
Sbjct: 208 EACIGCKKCEKVCPVGNITVTDRPVW 233


>gi|301059324|ref|ZP_07200251.1| putative selenate reductase, YgfK subunit [delta proteobacterium
            NaphS2]
 gi|300446553|gb|EFK10391.1| putative selenate reductase, YgfK subunit [delta proteobacterium
            NaphS2]
          Length = 1478

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 7/51 (13%)

Query: 9    CILCKHTDCVEVCPVDC---FYEG--ENFLAIHPDECIDCGVCEPECPVDA 54
            C  C    CV+VCP         G  E    I+P  C  CG+C   C   A
Sbjct: 1412 CSSCGV--CVDVCPYSAPSLIETGPFEGKAEINPILCKGCGLCVASCRSGA 1460



 Score = 38.6 bits (89), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 34  AIHPDECIDCGVCEPECPV 52
            I P++C  CG C   CPV
Sbjct: 103 YIDPNKCTACGDCAEVCPV 121



 Score = 37.1 bits (85), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 35   IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
            ++P  C  CGVC   CP  A         E   +IN
Sbjct: 1407 VNPLRCSSCGVCVDVCPYSAPSLIETGPFEGKAEIN 1442


>gi|298294405|ref|YP_003696344.1| cytochrome C oxidase accessory protein CcoG [Starkeya novella DSM
           506]
 gi|296930916|gb|ADH91725.1| cytochrome c oxidase accessory protein CcoG [Starkeya novella DSM
           506]
          Length = 488

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV  CP        + L      CI CG+C   C         P   I  D
Sbjct: 273 DCIDC--RQCVAACPTGVDIRLGSQL-----ACIQCGLCIDACDTVMEKIGRPTRLIAYD 325

Query: 59  TEPGLELWLK 68
           TE  ++  +K
Sbjct: 326 TEMNVQRRIK 335


>gi|295099079|emb|CBK88168.1| hypothetical protein [Eubacterium cylindroides T2-87]
          Length = 218

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPV 52
          + C  C  + C  +CP+         EG  +  I   +CIDC  C   CP 
Sbjct: 11 DKCSGC--SACYSICPMSAISMIPDQEGFQYPIIDEKKCIDCRQCINVCPF 59



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 11/48 (22%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKK 84
           D+C  C  C   CP+ AI     P  E +         Q+P I  KK
Sbjct: 10 KDKCSGCSACYSICPMSAIS--MIPDQEGF---------QYPIIDEKK 46


>gi|227485674|ref|ZP_03915990.1| iron-sulfur cluster-binding protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236346|gb|EEI86361.1| iron-sulfur cluster-binding protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 287

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CI C    C  VC +D    +    L     ECI CG C   CP  AI  +
Sbjct: 231 DKCISCG--KCARVCKMDVDIRQSTTHL-----ECIRCGDCVKACPTKAIISE 276



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 17  CVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVD 53
           C  +CP+  FY   N  +I     + D+CI CG C   C +D
Sbjct: 205 CKWICPLGAFYSLFNKYSIYQLKLNEDKCISCGKCARVCKMD 246


>gi|167389621|ref|XP_001739023.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165897462|gb|EDR24612.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 409

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDA 54
          V+ + C    C+  +C + CP++     C      +    I    CI C +C  +CP +A
Sbjct: 16 VINDRCKPGKCR-LECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKKCPFEA 74

Query: 55 IK 56
          IK
Sbjct: 75 IK 76


>gi|71907125|ref|YP_284712.1| electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
 gi|71846746|gb|AAZ46242.1| Electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
          Length = 177

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI-KPDTEP 61
           V  E CI C    C++VCP D        +  +  + C  C  C   CP +A+       
Sbjct: 105 VTEEICIGC--CRCMKVCPTDAIIGAAKQIHNVIREACTGCSSCVDVCPTEALGMMPIPV 162

Query: 62  GLELW 66
            L+ W
Sbjct: 163 TLQHW 167



 Score = 34.0 bits (77), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 29  GENFLAIHPDECIDCGVCEPECPVDAI 55
           G     +  + CI C  C   CP DAI
Sbjct: 99  GPQIAEVTEEICIGCCRCMKVCPTDAI 125


>gi|15231301|ref|NP_187973.1| ATRLI1; transporter [Arabidopsis thaliana]
 gi|75335031|sp|Q9LID6|AB1E_ARATH RecName: Full=ABC transporter E family member 1; Short=ABC
          transporter ABCE.1; Short=AtABCE1; AltName: Full=RNase
          L inhibitor-like protein 1; Short=AtRLI1;
          Short=AthaRLI1
 gi|9294008|dbj|BAB01911.1| RNase L inhibitor [Arabidopsis thaliana]
 gi|28393118|gb|AAO41992.1| putative RNase L inhibitor protein [Arabidopsis thaliana]
 gi|28827462|gb|AAO50575.1| putative RNase L inhibitor protein [Arabidopsis thaliana]
 gi|332641865|gb|AEE75386.1| ABC transporter E family member 1 [Arabidopsis thaliana]
          Length = 603

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFL-----------AIHPDECIDCGVCEPECPV 52
          +V+E+   CK   C + C   C       L            I  + CI CG+C  +CP 
Sbjct: 10 IVSED--RCKPKKCRQECKKSCPVVKTGKLCIEVGSTSKSAFISEELCIGCGICVKKCPF 67

Query: 53 DAIK 56
          +AI+
Sbjct: 68 EAIQ 71


>gi|332307904|ref|YP_004435755.1| cytochrome c oxidase accessory protein CcoG [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175233|gb|AEE24487.1| cytochrome c oxidase accessory protein CcoG [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 475

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 275 DCIDCNL--CVQVCPTGIDIRNGLQY-----ECINCGACVDAC 310


>gi|316962582|gb|EFV48695.1| NADH dehydrogenase I, I subunit [Trichinella spiralis]
          Length = 114

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENF---------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP      E E             I   +CI CG+C+  CPVDAI
Sbjct: 51  ERCIACKL--CEAICPAQAITIEAEERPDGSRRTTRYDIDMCKCIYCGLCQEACPVDAI 107



 Score = 34.4 bits (78), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEP 61
          + CI C +CE  CP  AI  + E 
Sbjct: 51 ERCIACKLCEAICPAQAITIEAEE 74


>gi|306819722|ref|ZP_07453382.1| iron-sulfur cluster-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552220|gb|EFM40151.1| iron-sulfur cluster-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 288

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKP 57
           CI+C    CV VCPV+ F   ++   +   P  CI C  C   CP  A+K 
Sbjct: 214 CIVCGQ--CVSVCPVNMFVNLDSKVQMVRDPKHCILCAECYHHCPAKAVKH 262



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVD 53
            +     ++I   +CI CG C   CPV+
Sbjct: 200 IHRKYKKVSIDATKCIVCGQCVSVCPVN 227


>gi|284007515|emb|CBA73011.1| Electron transport complex protein rnfC [Arsenophonus nasoniae]
          Length = 586

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 5   VTENCILCKHTDCVEVCPVDC-------FYEGENFLA---IHPDECIDCGVCEPECPVD 53
           + E CI C    C + CP +        F  G+        +  +CI+CG C   CP +
Sbjct: 376 IEEACIRCGL--CTQACPANLLPQQLYWFSRGQEHEKAEKYNLSDCIECGACAYVCPSN 432


>gi|258405760|ref|YP_003198502.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797987|gb|ACV68924.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 524

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           V E+C  C    C + CPV    +G     +   EC++CG+C  +CP + I   T     
Sbjct: 218 VGEHCTHCG--RCAQQCPVGIGEDGA----VAAGECLNCGLCVAQCPEEVIGFQTGGQQR 271

Query: 65  LWLKINSEYATQWP 78
                    A  WP
Sbjct: 272 ---------APFWP 276



 Score = 41.7 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 9/49 (18%)

Query: 17  CVEVCPVDCF----YEGENFL--AIHPDECIDCGVCEPECPVD---AIK 56
           C E CP          G+      +  D C  CG CE  CPV    AI+
Sbjct: 422 CDEACPFGAIDLRREPGQKVAVPYVLEDRCTGCGACEHACPVQGQAAIQ 470



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 15  TDCVEVCPVDCFY-----------EGENFLAIHPDECID------CGVCEPECPVDAIKP 57
           T C EVCP                 G   L   P +C+       C VC+  CP  AI  
Sbjct: 376 TACGEVCPTGAIRSLPLTEKLWAKMGTARLL--PSKCLAWEWDRSCLVCDEACPFGAIDL 433

Query: 58  DTEPGLE 64
             EPG +
Sbjct: 434 RREPGQK 440


>gi|213029517|ref|ZP_03343964.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 216

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
            + CI C    CV+ C    V C              CI CG C   CP  A     +P 
Sbjct: 56  ADRCIGCG--ACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLA--WQRKPD 111

Query: 63  LELWLKINSEYATQWPNI 80
               +++    + + P +
Sbjct: 112 QLWQVRLGGRTSKKTPRV 129


>gi|219666551|ref|YP_002456986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219536811|gb|ACL18550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 174

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKP 57
           Y ++ +C  C++ +CV VCP   + + ++ + +H P  C  CG C   CP    K 
Sbjct: 48  YFLSLSCNHCENPECVRVCPEGTYRKRKDGIVLHDPWRCSGCGKCTHACPFHVPKY 103


>gi|332295827|ref|YP_004437750.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermodesulfobium narugense DSM 14796]
 gi|332178930|gb|AEE14619.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermodesulfobium narugense DSM 14796]
          Length = 70

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE---NFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + C  C    CV +CP    +  E    F  I PD+C  CGVC   CP  A+K      
Sbjct: 14 DLCEACG--ACVLICPTGAIFISEKDIEFSVIDPDKCQGCGVCAIVCPNGAVKEKLNEP 70



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIK 56
           +I PD C  CG C   CP  AI 
Sbjct: 9  FSIDPDLCEACGACVLICPTGAIF 32


>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
 gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
          Length = 281

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           + C LCK   C+EVCP +     +N +      ECI C  C   CP  AI
Sbjct: 186 DLCNLCK--KCIEVCPKNVLTVYQNRIQVKDKYECILCKQCMYACPTKAI 233


>gi|304315261|ref|YP_003850408.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin
           [Methanothermobacter marburgensis str. Marburg]
 gi|313104135|sp|P60232|MVHB_METTM RecName: Full=Polyferredoxin protein mvhB
 gi|302588720|gb|ADL59095.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin
           [Methanothermobacter marburgensis str. Marburg]
          Length = 412

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +C+ C    CV  CPVD     +    + I  D CI CGVC   CP +A+ 
Sbjct: 145 DCVGCG--MCVPECPVDAITLEKVGGVIEIDEDTCIKCGVCAQTCPWNAVY 193



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           E CI C    CVE CP D       N     P  C  CG+CE  CPVDAI  D E G
Sbjct: 214 EACIGCN--TCVEACPGDFIVPKSSNLTVELPAICTACGLCEQLCPVDAIDLDVELG 268



 Score = 41.3 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 20/64 (31%)

Query: 9   CILCKHTDCVEVCPVDCF--------------YEGENFLAIHPDECIDCGVCEPECPVDA 54
           C++C    CV++CPV                  EG  F+A    +C+ CG+C PECPVDA
Sbjct: 107 CVMC--QKCVDICPVGVIGVEGIKEPAKVELEIEGPIFIA----DCVGCGMCVPECPVDA 160

Query: 55  IKPD 58
           I  +
Sbjct: 161 ITLE 164



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C + CP +  Y                 +  + CI C  C   CP D I 
Sbjct: 175 DTCIKCGV--CAQTCPWNAVYISGKKPEKRAKEIRKFELDEEACIGCNTCVEACPGDFIV 232

Query: 57  P 57
           P
Sbjct: 233 P 233



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 11/54 (20%)

Query: 9  CILCKH-TDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECP 51
          C +C     CV+ CP                 +  +  +PD+C +CG C   CP
Sbjct: 34 CDICGGEPKCVDACPTGALKIEDLVVDEAGNTQGRIVFNPDKCNECGDCVEVCP 87



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIK 56
           + ++ ++CI CG C+  CP  AI+
Sbjct: 1  MIVVNKEDCIRCGACQGTCPTAAIE 25



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C+E CP D     +  + +    CI C  C P CP  A
Sbjct: 366 CDQCGD--CIEACPYDMLKLTDEKVPL-KGFCILCDQCIPACPKGA 408


>gi|300690753|ref|YP_003751748.1| 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
 gi|299077813|emb|CBJ50451.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
          Length = 708

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAI 55
           E C LC    CV  CP     +      +   E  C+ CG+CE  CP DAI
Sbjct: 578 ERCTLC--MACVSACPSQALRDQAERPVLSMIERNCVQCGLCETTCPEDAI 626



 Score = 45.5 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 10  ILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDA 54
           + C    CV VC          +G   + + P+ C+ CG C   CP  A
Sbjct: 323 VGCD--ACVRVCSAAAITSQWKDGRGSVHVTPNLCVGCGACTTACPTGA 369



 Score = 39.0 bits (90), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           + C  C    C++VCP D     +    I  D C D   C   C
Sbjct: 198 DRCTHCN--ACIDVCPEDAI---DTLYQIDLDACRDHRDCVKAC 236



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  D C  C  C   CP DAI
Sbjct: 195 IDLDRCTHCNACIDVCPEDAI 215



 Score = 34.4 bits (78), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
              K  D V   P    +     + +  + C  C  C   CP  A++   E  +   ++ 
Sbjct: 553 RHAKAADAVIPLPAGAPFGA---IEVDRERCTLCMACVSACPSQALRDQAERPVLSMIER 609

Query: 70  N 70
           N
Sbjct: 610 N 610


>gi|291548339|emb|CBL21447.1| Uncharacterized Fe-S center protein [Ruminococcus sp. SR1/5]
          Length = 374

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + C  C    C + C  D          I  D+C  CG C   C  DA+        EL 
Sbjct: 195 DVCRGC--RRCAKECGSDAITYVNKKAVIDYDKCKGCGRCIGACSYDAVYNPNSSANELL 252

Query: 67  LKINSEYAT 75
            +  +EYA 
Sbjct: 253 DRKMAEYAQ 261


>gi|291534172|emb|CBL07285.1| glutamate synthase (NADPH) GltB3 subunit [Megamonas hypermegale
           ART12/1]
          Length = 778

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 9   CILCKHT----DCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
           CI C        C++ CP          +G        ++CI CG+C   CP
Sbjct: 706 CISCGTCRDCETCMQSCPEKAITRIQHLDGSFEYVSDANKCIGCGICAGVCP 757


>gi|284106853|ref|ZP_06386296.1| NADH dehydrogenase subunit I [Candidatus Poribacteria sp. WGA-A3]
 gi|283830032|gb|EFC34308.1| NADH dehydrogenase subunit I [Candidatus Poribacteria sp. WGA-A3]
          Length = 179

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 18/83 (21%)

Query: 6   TENCILCKHTDCVEVCP------VDCFYEGE------NFLAIHPDECIDCGVCEPECPVD 53
           TE C+ C    C   CP      V     GE          +    C+ CG+C   CPVD
Sbjct: 60  TEKCVGCDL--CEAACPSRVIRVVSAEVPGEPTKRFAKEYYMDMTRCLFCGLCVDACPVD 117

Query: 54  AIKPDTEPGLELW----LKINSE 72
           A+    E    ++    L +N E
Sbjct: 118 ALGMSQEFEWAVYDKRHLHLNKE 140


>gi|254882448|ref|ZP_05255158.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254835241|gb|EET15550.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 510

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPEC- 50
           V +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 433 VAQNCIVNTDGVSCGNCARHCPTGAILMVPKDADDGKSLKIPVVNTERCIGCGACENLCP 492

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 493 SRPFSAIYVE 502



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 15/56 (26%)

Query: 15  TDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPVDAI 55
             C EVCP D  +  +                  CI       CG C   CP  AI
Sbjct: 403 AKCAEVCPTDAIHLADLTEKSSVQIGHAVWVAQNCIVNTDGVSCGNCARHCPTGAI 458



 Score = 37.1 bits (85), Expect = 0.78,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP        +   +   E       C  +C  C   CP DAI 
Sbjct: 359 AQHCTAC--QLCVSVCPNQVLRPSGDLKHLMQPEMSYERGYCRPECAKCAEVCPTDAIH 415



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C   AIK 
Sbjct: 223 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQGAIKY 270


>gi|253688411|ref|YP_003017601.1| electron transport complex, RnfABCDGE type, B subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259493852|sp|C6DH16|RNFB_PECCP RecName: Full=Electron transport complex protein rnfB
 gi|251754989|gb|ACT13065.1| electron transport complex, RnfABCDGE type, B subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 192

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
            ++   NCI C  T C++ CPVD        +  +  D C  C +C   CP D I+
Sbjct: 110 AWIDESNCIGC--TKCIQACPVDAIIGSTKAVHTVVSDLCTGCDLCVAPCPTDCIE 163


>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 597

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           Y+    C  C    C + CP      E +    I   +CI CG C+ +C  ++I 
Sbjct: 543 YIDARACKGCGL--CSKNCPAGAISGEKKKPHVIDAGKCIKCGTCKDKCKFNSIF 595



 Score = 43.6 bits (102), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 21  CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           CP     +      I    C  CG+C   CP  AI  + +   
Sbjct: 531 CPAGA-CQALVTYYIDARACKGCGLCSKNCPAGAISGEKKKPH 572


>gi|149280562|ref|ZP_01886678.1| NADH dehydrogenase I chain I [Pedobacter sp. BAL39]
 gi|149228677|gb|EDM34080.1| NADH dehydrogenase I chain I [Pedobacter sp. BAL39]
          Length = 167

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 19/78 (24%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C   CP +            E  L           I+   CI CG+CE  
Sbjct: 72  ERCTACGL--CALSCPAEAITMIAAERKPEEKQLYREEKYASVYEINMLRCIFCGLCEEA 129

Query: 50  CPVDAIKPDTEPGLELWL 67
           CP +AI  D       +L
Sbjct: 130 CPKEAIYLDGPIVPADYL 147


>gi|139437066|ref|ZP_01771226.1| Hypothetical protein COLAER_00201 [Collinsella aerofaciens ATCC
          25986]
 gi|133776713|gb|EBA40533.1| Hypothetical protein COLAER_00201 [Collinsella aerofaciens ATCC
          25986]
          Length = 153

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 2  TYVVTEN--CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAI 55
          TY ++    C  C+   C + CP    +       I  + D CI C  C   CP  A+
Sbjct: 24 TYEISAPVACHHCEDAPCAKACPTGALFFDPKNHRIGVNEDNCIGCKSCVMACPFGAV 81


>gi|117619471|ref|YP_858641.1| cytochrome c oxidase accessory protein CcoG [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560878|gb|ABK37826.1| cytochrome c oxidase accessory protein CcoG [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 482

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 277 DCIDCDL--CVQVCPTGIDIRDGLQY-----ECINCGACVDAC 312



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P       CIDC +C   CP
Sbjct: 230 CIHMCPYARFQSAMFDKDTFIVGYDAKRGETRGARARKADPKALGLGDCIDCDLCVQVCP 289

Query: 52  VD 53
             
Sbjct: 290 TG 291


>gi|194334197|ref|YP_002016057.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Prosthecochloris aestuarii DSM 271]
 gi|194312015|gb|ACF46410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Prosthecochloris aestuarii DSM 271]
          Length = 61

 Score = 47.1 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG-----VCEPECPVDAI 55
          M   +TE C  C    C   CPV     G++   I    C +C       C   CP + I
Sbjct: 1  MALYITEECTYCG--ACEPECPVTAISAGDDIYVIDAATCNECAGLDEQACVSVCPAECI 58


>gi|294101088|ref|YP_003552946.1| Polyferredoxin-like protein [Aminobacterium colombiense DSM 12261]
 gi|293616068|gb|ADE56222.1| Polyferredoxin-like protein [Aminobacterium colombiense DSM 12261]
          Length = 448

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           +CI C    C   CPV+   E +     +  ECI CG C   CPV+
Sbjct: 216 SCIHC--HLCHTSCPVNLNPEAKETE--NSAECIACGRCTDTCPVE 257



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 5/42 (11%)

Query: 17  CVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVD 53
           C  +CP+         L++     +   CI C +C   CPV+
Sbjct: 189 CRYLCPLGALLALGQKLSLVKIRRNDSSCIHCHLCHTSCPVN 230


>gi|257789834|ref|YP_003180440.1| thiamine pyrophosphate protein domain-containing protein
           TPP-binding [Eggerthella lenta DSM 2243]
 gi|257473731|gb|ACV54051.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Eggerthella lenta DSM 2243]
          Length = 735

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 2   TYVVTENCILCKHTDCVEV--CP---VDCFYEGEN-----FLAIHPDECIDCGVCEPECP 51
             V  E C  CK   C+    CP    D    G          + P  C  CG+C   CP
Sbjct: 648 AVVDAETCTGCK--KCITEIGCPGIGFDADARGPRSKQRGQAFVDPSLCNGCGLCVQVCP 705

Query: 52  VDA 54
            DA
Sbjct: 706 FDA 708


>gi|257063839|ref|YP_003143511.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791492|gb|ACV22162.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 191

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV  CP    ++ E    +++  + CI C  C   CP  A   + +
Sbjct: 67  CNHCESPACVLNCPTGAMHKDEETGVVSVDQNICIGCSTCANTCPYGAPALNED 120


>gi|222109383|ref|YP_002551647.1| cytochrome c oxidase accessory protein ccog [Acidovorax ebreus
           TPSY]
 gi|221728827|gb|ACM31647.1| cytochrome c oxidase accessory protein CcoG [Acidovorax ebreus
           TPSY]
          Length = 470

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  + CV+VCP                ECI CG+C   C
Sbjct: 264 DCIDC--SLCVQVCPTGIDIRKGLQY-----ECIGCGMCVDAC 299


>gi|220918980|ref|YP_002494284.1| formate dehydrogenase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956834|gb|ACL67218.1| formate dehydrogenase, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 291

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +V + C+ C    C++ CP      +  N +     D+CI CG C+  CP +
Sbjct: 94  IVKDGCLHCAEPGCLKACPAPGAIVQYANGIVDFQQDQCIGCGYCQTGCPFN 145


>gi|113868290|ref|YP_726779.1| polyferredoxin [Ralstonia eutropha H16]
 gi|113527066|emb|CAJ93411.1| Polyferredoxin [Ralstonia eutropha H16]
          Length = 492

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +C+ C  + CV+VCP                ECI CG C   C     K +   GL  + 
Sbjct: 278 DCVNC--SICVQVCPTGIDIRDGLQY-----ECIGCGACIDACDQVMDKMEYPRGLIRYT 330

Query: 68  KINS 71
             N+
Sbjct: 331 SENA 334


>gi|121592579|ref|YP_984475.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120604659|gb|ABM40399.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 470

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  + CV+VCP                ECI CG+C   C
Sbjct: 264 DCIDC--SLCVQVCPTGIDIRKGLQY-----ECIGCGMCVDAC 299


>gi|153884|gb|AAA99277.1| anaerobic sulfite reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 337

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 6   TENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            + CI C    CV+ C    V C              CI CG C   CP  A
Sbjct: 177 ADRCIGCG--ACVKACSHHAVGCLALKNGKAVKEESACIGCGECVLACPTLA 226


>gi|189346345|ref|YP_001942874.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          limicola DSM 245]
 gi|189340492|gb|ACD89895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
          limicola DSM 245]
          Length = 62

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+  +TE C  C    C   CPV+    G++   I    C +C        C   CP D 
Sbjct: 1  MSLQITEACTYC--AACEPECPVNAISAGDDIYVIDATTCTECSGYADSPACIAVCPADC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|332299154|ref|YP_004441076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
 gi|332182257|gb|AEE17945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
          Length = 304

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 17  CVEVCPVDCFYEGEN-----FLAIHPDECIDCGVCEPECPVD 53
           C  VCPV  F +  N      + I P++CI C  CE  CP+ 
Sbjct: 216 CKYVCPVPVFQKAGNACSLLKITIDPEKCIGCKKCERSCPMQ 257



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 6/51 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDA 54
           E CI CK   C   CP+      Y+  N       ECI C  C   C  +A
Sbjct: 242 EKCIGCK--KCERSCPMQVPILTYKTGNMRV-GSTECIACLKCTHVCSRNA 289


>gi|329297710|ref|ZP_08255046.1| NADH dehydrogenase [Plautia stali symbiont]
          Length = 82

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M  ++TE CI C    C   CP      GE+   I  D C +C        C+  CP+D
Sbjct: 1  MALIITERCINCD--MCEPECPNQAISMGESIYQIDADRCTECVGHYDEPTCQSVCPID 57


>gi|330502371|ref|YP_004379240.1| electron transport complex protein RnfB [Pseudomonas mendocina
           NK-01]
 gi|328916657|gb|AEB57488.1| electron transport complex protein RnfB [Pseudomonas mendocina
           NK-01]
          Length = 191

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 107 AFIREAECIGC--TKCIQACPVDAIVGAARQMHTVIVSECTGCDLCVEPCPVDCI 159



 Score = 34.0 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 18  VEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           VE  P+D     +  +   I   ECI C  C   CPVDAI
Sbjct: 90  VEAEPLDAVEGEKPQMVAFIREAECIGCTKCIQACPVDAI 129


>gi|320658802|gb|EFX26476.1| electron transport complex protein RnfB [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 192

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 1   MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
           M  V+ EN CI C  T C++ CPVD        +  +    C  C +C   CP   I  +
Sbjct: 108 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSVLCTGCNLCVDPCPTHCISLQ 165

Query: 57  PDTEPGLELWLKIN 70
           P  E        +N
Sbjct: 166 PVAETPDSWKWDLN 179


>gi|317401996|gb|EFV82596.1| NADH-quinone oxidoreductase subunit I [Achromobacter xylosoxidans
           C54]
          Length = 162

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRDD 87


>gi|302670861|ref|YP_003830821.1| indolepyruvate ferredoxin oxidoreductase alpha subunit IorA
           [Butyrivibrio proteoclasticus B316]
 gi|302395334|gb|ADL34239.1| indolepyruvate ferredoxin oxidoreductase alpha subunit IorA
           [Butyrivibrio proteoclasticus B316]
          Length = 584

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           V T+ C+ CK   C+ + CP            I    C+ C VC   CPV A
Sbjct: 529 VNTDKCVGCK--SCMRIGCP--AISMKNGKANIDTTLCVGCNVCSQLCPVGA 576


>gi|302035984|ref|YP_003796306.1| NADH-quinone oxidoreductase subunit I [Candidatus Nitrospira
           defluvii]
 gi|300604048|emb|CBK40380.1| NADH-quinone oxidoreductase, subunit I [Candidatus Nitrospira
           defluvii]
          Length = 191

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 14/73 (19%)

Query: 6   TENCILCKHTDCVEVCPVDCFY------EGE------NFLAIHPDECIDCGVCEPECPVD 53
           TE C+ C    C   CP            GE          +    C+ CG+C   CPVD
Sbjct: 72  TEKCVGCDL--CEAACPSRVIRVVSGEVPGEPTKRYSKEYYMDMTRCLFCGLCVDACPVD 129

Query: 54  AIKPDTEPGLELW 66
           A+    E    ++
Sbjct: 130 ALGMTREFEWAVY 142


>gi|282162750|ref|YP_003355135.1| hypothetical protein MCP_0080 [Methanocella paludicola SANAE]
 gi|282155064|dbj|BAI60152.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 461

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V ++CI C    C   CP     +   F       CI C  CE  CP +AI
Sbjct: 219 VNDSCIKC--MKCRRACPAGAISKENGF---DTTACIKCLKCERACPENAI 264



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 17  CVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD--AIKPDTEPG 62
           C EVCPV      G N   +  D C  CG C+  CPV+  AI   +E  
Sbjct: 408 CEEVCPVKAIKSTGRNRPVVSEDVCAGCGSCQLNCPVEGKAIVVSSEGE 456



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 14/60 (23%)

Query: 9   CILCKHTDCVEVCPVDCFYEGEN------FLAIHPDECID------CGVCEPECPVDAIK 56
           C  C    C  VCP                  +  ++CI       C +CE  CPV AIK
Sbjct: 361 CERCG--TCGSVCPTGAVISIPEANMKMGTARLDKNKCIAWAQNKKCLICEEVCPVKAIK 418



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 38  DECIDCGVCEPECPVDAIKPD 58
           D CI C  C   CP  AI  +
Sbjct: 221 DSCIKCMKCRRACPAGAISKE 241



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 12/67 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGE----------NFLAIHPDECIDCGVCEPECPVDAIKP 57
            C+ C+   CV+ C                     L  +  +C  CG C   CP  A+  
Sbjct: 321 ACVRCE--SCVKACLGQVIRPAGLDGGLERAFTPVLDFNKGKCERCGTCGSVCPTGAVIS 378

Query: 58  DTEPGLE 64
             E  ++
Sbjct: 379 IPEANMK 385


>gi|197335123|ref|YP_002156163.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11]
 gi|197316613|gb|ACH66060.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11]
          Length = 558

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 17  CVEVCPVDCFY-EGEN----FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           CV+ CP      EG +     + I+P  C   G C   CP +AI        +
Sbjct: 192 CVDACPAGALTSEGSDQTGHHIQINPYLCQGVGTCATACPTEAISYALPEAEK 244



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECP 51
           T++C LC    CV VCP    +   +   L     +C+ CG+C   CP
Sbjct: 422 TKDCTLCMG--CVAVCPTRALHSDPDSPTLKFIEQDCVQCGLCVSACP 467



 Score = 37.1 bits (85), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 13/76 (17%)

Query: 30  ENFLAIHPDEC-------IDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITT 82
             +  ++P+ C         C  C   CP  A+  +        ++IN           T
Sbjct: 169 PKYFRLNPELCAHSSRGVKGCERCVDACPAGALTSEGSDQTGHHIQINPYLCQGVGTCAT 228

Query: 83  KKE------SLPSAAK 92
                    +LP A K
Sbjct: 229 ACPTEAISYALPEAEK 244


>gi|146306435|ref|YP_001186900.1| electron transport complex protein RnfB [Pseudomonas mendocina ymp]
 gi|166991044|sp|A4XS52|RNFB_PSEMY RecName: Full=Electron transport complex protein rnfB
 gi|145574636|gb|ABP84168.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           mendocina ymp]
          Length = 191

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
            ++    CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 107 AFIREAECIGC--TKCIQACPVDAIVGAARQMHTVIVSECTGCDLCVEPCPVDCI 159



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 18  VEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAI 55
           VE  P+D     +  +   I   ECI C  C   CPVDAI
Sbjct: 90  VEPEPLDAVEGEKPQMVAFIREAECIGCTKCIQACPVDAI 129


>gi|83591008|ref|YP_431017.1| formate hydrogenlyase complex iron-sulfur subunit [Moorella
          thermoacetica ATCC 39073]
 gi|83573922|gb|ABC20474.1| NADH dehydrogenase subunit I [Moorella thermoacetica ATCC 39073]
          Length = 184

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI C    C   CP +         +G     I    CI CG CE  CP  AI   TE
Sbjct: 38 DRCIACG--ACATACPPNAITMEYDLKQGTKTWNIFYGRCIFCGRCEEVCPTGAIALTTE 95



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGL 63
          D CI CG C   CP +AI  + +   
Sbjct: 38 DRCIACGACATACPPNAITMEYDLKQ 63


>gi|46580698|ref|YP_011506.1| iron-sulfur protein CooF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602010|ref|YP_966410.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46450117|gb|AAS96766.1| iron-sulfur protein CooF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562239|gb|ABM27983.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311234417|gb|ADP87271.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris RCH1]
          Length = 173

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  CK   C  VCP     + +  + +    C  C +C   CP  AI
Sbjct: 63  CRQCKDAPCARVCPTRALVQDDGVVTMRAQFCAACRLCIMACPYGAI 109


>gi|330507418|ref|YP_004383846.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanosaeta concilii GP-6]
 gi|328928226|gb|AEB68028.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanosaeta concilii GP-6]
          Length = 594

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 2   TYVVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            + V++ C  C    CVE  CP            I+ + C  CG+C   CP  AI
Sbjct: 540 AFKVSDECQGC--RICVEYGCP--AIEFEGEMAKIN-NLCTGCGICAQICPSSAI 589


>gi|294494960|ref|YP_003541453.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292665959|gb|ADE35808.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 638

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 1   MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           M  +    C  C    C E+C  +          I+ D C +CG C   CP +A   + +
Sbjct: 510 MPVIDETKCTGCG--RCTELCKFNAISIEGGKAVINRDLCGNCGWCVRGCPHEA-ALEDK 566

Query: 61  PGLELWLKIN 70
            G  LW+  N
Sbjct: 567 RGYSLWIGGN 576



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
            CV V   D    G+    I   +C  CG C   C  +AI  +
Sbjct: 494 SCVRVRDHDIGIMGQLMPVIDETKCTGCGRCTELCKFNAISIE 536


>gi|253580939|ref|ZP_04858201.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847781|gb|EES75749.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 374

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  E C  C    C + C  D          I  D+C  CG C   C  DA+        
Sbjct: 192 VNEELCRGC--RRCAKECGSDAITYPNKKAVIDYDKCKGCGRCIGACGFDAVYNPNSSAN 249

Query: 64  ELWLKINSEYAT 75
           EL  +  +EYA 
Sbjct: 250 ELLDRKMAEYAQ 261


>gi|225568863|ref|ZP_03777888.1| hypothetical protein CLOHYLEM_04942 [Clostridium hylemonae DSM
           15053]
 gi|225162362|gb|EEG74981.1| hypothetical protein CLOHYLEM_04942 [Clostridium hylemonae DSM
           15053]
          Length = 601

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 4   VVTENCILCKHTDCVEV--CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  + C  C    C+    CP       +   AI P  C  CG+C   C   AI+ 
Sbjct: 548 VAEDACTSC--RQCIRELGCP--AIVNADGKAAIEPSLCFGCGICAQVCKFGAIQE 599


>gi|157375410|ref|YP_001474010.1| putative pyruvate oxidoreductase [Shewanella sediminis HAW-EB3]
 gi|157317784|gb|ABV36882.1| putative pyruvate oxidoreductase [Shewanella sediminis HAW-EB3]
          Length = 1197

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 37/105 (35%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------------------------EGENFLAIHPDE 39
           E CI C   +C  VCP                                +    L ++ D+
Sbjct: 697 EICIQCG--NCAIVCPHAAIRAKFYNKRRLQGAPTTFPSSNVTSRGFPDARYTLQVYADD 754

Query: 40  CIDCGVCEPECPVD--------AIKPDTEPGLELWLKINSEYATQ 76
           C  CG+C   CPV+        AI    +       + N E+   
Sbjct: 755 CTGCGLCVKACPVNHTADEHHHAINMQNKEKHLQDERRNLEFFET 799



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 36  HPDECIDCGVCEPECPVDAIK 56
             + CI CG C   CP  AI+
Sbjct: 695 DREICIQCGNCAIVCPHAAIR 715


>gi|149184627|ref|ZP_01862945.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
 gi|148831947|gb|EDL50380.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
          Length = 161

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDA+
Sbjct: 60  ERCIACKL--CEAVCPAQAITIESEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAV 116



 Score = 38.6 bits (89), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++EP  +
Sbjct: 60 ERCIACKLCEAVCPAQAITIESEPRED 86


>gi|254302139|ref|ZP_04969497.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322331|gb|EDK87581.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 435

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 17/66 (25%)

Query: 6   TENCILCKHTDCVEVCPVD----------CFYEGENFLAIHPDECIDCGVCEPECP---- 51
           T+ CI C  + CV  CP+              E E     +  +CI+CG C   CP    
Sbjct: 361 TKACISC--SKCVSACPMGLAPLMFDRLAAAKEYEEMAVHNLMDCIECGSCAYICPANRP 418

Query: 52  -VDAIK 56
             +AIK
Sbjct: 419 LAEAIK 424


>gi|148378021|ref|YP_001252562.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287505|emb|CAL81564.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
          Length = 354

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     +D   +G   +   +  +CI C  C+  CP  AI+
Sbjct: 284 IKEKCIGCN--RCAEVCPEKPYVIDMIKKGGKKIPVWNMKKCIRCFCCQELCPKGAIE 339



 Score = 33.6 bits (76), Expect = 8.7,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 257 REGGDFYFINPKVTNFLKDIIAPDPTLIKEKCIGCNRCAEVCP 299


>gi|115378570|ref|ZP_01465725.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820736|ref|YP_003953094.1| NADH-quinone oxidoreductase subunit i [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364442|gb|EAU63522.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393808|gb|ADO71267.1| NADH-quinone oxidoreductase subunit I [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 21/70 (30%)

Query: 9   CILCKHTDCVEVCPVDCFY--------EGEN-----------FLAIHPDECIDCGVCEPE 49
           C+ C    C  +CP  C Y        E E               I    CI CG+C   
Sbjct: 88  CVAC--YMCATICPAQCIYIEAGEYAPESEESQSRVIEKYPTQFVIDELRCIVCGLCVEA 145

Query: 50  CPVDAIKPDT 59
           CP DAI+ DT
Sbjct: 146 CPKDAIRMDT 155


>gi|94266046|ref|ZP_01289766.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93453406|gb|EAT03831.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 677

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 9/55 (16%)

Query: 6   TENCILCKHTD----CVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECP 51
            + CI C        C   C            G+    +    CI CG C   CP
Sbjct: 613 AQRCISCGLCRDCHICEHTCHYGAISRQDLGAGDYRYVVDESRCIGCGFCAGVCP 667


>gi|70606479|ref|YP_255349.1| putative ATPase RIL [Sulfolobus acidocaldarius DSM 639]
 gi|68567127|gb|AAY80056.1| RNase L inhibitor-like protein [Sulfolobus acidocaldarius DSM 639]
          Length = 604

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 17  CVEVCPVD-----CFYEGE---NFLAIHPDECIDCGVCEPECPVDAI----KPDTEPGLE 64
           C+  CP++          E       I+ + CI CG+C  +CP DAI     PD     E
Sbjct: 20  CIAFCPINKSGSKAIELSEIVKGKPIIYEETCIGCGICIKKCPFDAIDIVNLPDEYGKDE 79

Query: 65  -LWLKINSEYATQWPNITTKKES 86
               K+N      +  IT KK S
Sbjct: 80  THRYKVN--GFKLFGMITPKKGS 100


>gi|56707219|ref|YP_169115.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257082|ref|YP_514444.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669689|ref|YP_666246.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315439|ref|YP_764162.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301254|ref|YP_001121222.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|167009474|ref|ZP_02274405.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187930996|ref|YP_001890980.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456280|ref|ZP_03664753.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368318|ref|ZP_04984336.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368973|ref|ZP_04984986.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371435|ref|ZP_04987436.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874057|ref|ZP_05246767.1| NADH-quinone oxidoreductase subunit I [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81598102|sp|Q5NIM7|NUOI_FRATT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502530|sp|Q2A1F8|NUOI_FRATH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122324576|sp|Q0BK59|NUOI_FRATO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123169702|sp|Q14K30|NUOI_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633520|sp|A4IW00|NUOI_FRATW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737393|sp|B2SEV7|NUOI_FRATM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|54114125|gb|AAV29696.1| NT02FT1744 [synthetic construct]
 gi|56603711|emb|CAG44672.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144913|emb|CAJ80261.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320022|emb|CAL08055.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130338|gb|ABI83525.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134049031|gb|ABO46102.1| NADH dehydrogenase I subunit I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254126|gb|EBA53220.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569674|gb|EDN35328.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|157121894|gb|EDO66064.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187711905|gb|ACD30202.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840056|gb|EET18492.1| NADH-quinone oxidoreductase subunit I [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158327|gb|ADA77718.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 162

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E E+         +   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEVVCPALAITINSTEREDGTRRTSSYEMDLFKCIFCGYCEESCPVDSI 117


>gi|51892039|ref|YP_074730.1| ferredoxin [Symbiobacterium thermophilum IAM 14863]
 gi|51855728|dbj|BAD39886.1| Na+-transporting NADH-quinone reductase subunit 6 [Symbiobacterium
           thermophilum IAM 14863]
          Length = 271

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V T  CI C    CV  CP        N   I P  C  CG+C  +CP   I
Sbjct: 210 VCTAGCIACGL--CVRQCPQKTIAMVNNVAYIDPSGCDGCGICAEKCPTKCI 259



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 12  CKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
                CV  CP D  +  E      +   +C  CG+C  ECP
Sbjct: 140 VGLGTCVRACPFDALHMDEAAGLPVVDRQKCTGCGICTQECP 181


>gi|219668381|ref|YP_002458816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538641|gb|ACL20380.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 184

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            C  C   +C  VCP   F + ++ +  I    C  C +C   CP DA + 
Sbjct: 51  ACNHCDSPECFRVCPQHAFNKRKDGIVEIDSSLCNGCRLCVKACPYDAPQY 101


>gi|317489291|ref|ZP_07947808.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325832214|ref|ZP_08165213.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
 gi|316911692|gb|EFV33284.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325486050|gb|EGC88504.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
          Length = 767

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 2   TYVVTENCILCKHTDCVEV--CP---VDCFYEGEN-----FLAIHPDECIDCGVCEPECP 51
             V  E C  CK   C+    CP    D    G          + P  C  CG+C   CP
Sbjct: 684 AVVDAETCTGCK--KCITEIGCPGIGFDADARGPRSKQRGQAFVDPSLCNGCGLCVQVCP 741

Query: 52  VDA 54
            DA
Sbjct: 742 FDA 744


>gi|313112566|ref|ZP_07798228.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625109|gb|EFQ08402.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 379

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 9   CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C    C + C  D   Y+  N   I   +C  CG C   C  DAI    +   E+  
Sbjct: 202 CRGC--HRCAKECGSDAITYDANNKAVIDQTKCKGCGRCIGACNFDAIYSQCDSANEMLD 259

Query: 68  KINSEYAT 75
           +  +EYA 
Sbjct: 260 RKMAEYAA 267


>gi|288961312|ref|YP_003451651.1| electron transport protein [Azospirillum sp. B510]
 gi|288913620|dbj|BAI75107.1| electron transport protein [Azospirillum sp. B510]
          Length = 181

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           C  C+   CV  CP +     +N + +  + C+ C  C   CP   +   T P +  +
Sbjct: 58  CHHCEDAPCVNACPNNAIVYRQNSVQVEQERCLGCKNCVLACPFGVMDVVTVPAVRQF 115


>gi|297527371|ref|YP_003669395.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297256287|gb|ADI32496.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 172

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    C+EVCP       E+  + +   +CI C  C   CP    + D + G
Sbjct: 57  SCLHCSRAPCIEVCPTGAMTRDESGAVYVESMKCIGCMACLYACPFGIPELDPKVG 112


>gi|255535803|ref|YP_003096174.1| NADH-ubiquinone oxidoreductase chain I [Flavobacteriaceae bacterium
           3519-10]
 gi|255341999|gb|ACU08112.1| NADH-ubiquinone oxidoreductase chain I [Flavobacteriaceae bacterium
           3519-10]
          Length = 182

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-------ENFLA----------IHPDECIDCGVCEPE 49
           E C  C    C  VCP +            E  L           I+   CI CG+CE  
Sbjct: 73  ERCTACGL--CAVVCPAEAITMTSAERTREEKHLYREEKYASVYEINMLRCIFCGLCEEA 130

Query: 50  CPVDAIK 56
           CP  A+ 
Sbjct: 131 CPKSAVY 137


>gi|146339456|ref|YP_001204504.1| nitrogen fixation protein FixG [Bradyrhizobium sp. ORS278]
 gi|146192262|emb|CAL76267.1| Nitrogen fixation protein fixG; 4Fe-4S ferredoxin, iron-sulfur
           binding domain [Bradyrhizobium sp. ORS278]
          Length = 493

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV VCP      +G         +CI CG+C   C
Sbjct: 279 DCIDCKQ--CVAVCPTGIDIRDGAQM------DCIQCGLCIDAC 314


>gi|67521596|ref|XP_658860.1| hypothetical protein AN1256.2 [Aspergillus nidulans FGSC A4]
 gi|40746693|gb|EAA65849.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 657

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V T+ C    C+  +C + CPV      C           I    CI CG+C  +CP  A
Sbjct: 11 VSTDKCKPKKCR-QECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGA 69

Query: 55 IK 56
          I 
Sbjct: 70 IH 71


>gi|332828887|gb|EGK01570.1| hypothetical protein HMPREF9455_02102 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 511

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 18/72 (25%)

Query: 3   YVVTENCI------LCKHTDCVEVCPVDCF----YEGENFL---AIHPDECIDCGVCEPE 49
           + V + C+       C    C E CP        YEG   L    I PD C+ CG CE  
Sbjct: 416 HFVEDICVVHVEETNCG--ACAEHCPTQAVTMVPYEGHEGLTIPHITPDICVGCGGCEFI 473

Query: 50  CPV---DAIKPD 58
           CPV    AI  +
Sbjct: 474 CPVRPNRAIFVE 485


>gi|332525619|ref|ZP_08401774.1| formate dehydrogenase subunit beta [Rubrivivax benzoatilyticus JA2]
 gi|332109184|gb|EGJ10107.1| formate dehydrogenase subunit beta [Rubrivivax benzoatilyticus JA2]
          Length = 309

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C++ CP      +  N +   H + CI CG C   CP +  +
Sbjct: 99  DGCMHCADPGCLKACPSPGAIVQYTNGIVDFHQENCIGCGYCITGCPFNVPR 150



 Score = 38.2 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ENCI C +  C+  CP +     + ++       +C  C           C   CP  AI
Sbjct: 132 ENCIGCGY--CITGCPFNVPRISKTDHKAY----KCTLCSDRVAVGQEPACVKTCPTGAI 185

Query: 56  KPDTEPGLEL 65
              T+  ++ 
Sbjct: 186 MFGTKQAMKD 195


>gi|307211114|gb|EFN87340.1| ATP-binding cassette sub-family E member 1 [Harpegnathos
          saltator]
          Length = 608

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C   CPV      C     N    +I  + CI CG+C  +CP +A
Sbjct: 19 VNSDKCKPKRCR-QECKRSCPVVRMGKLCIEVNPNSKIASISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|303257314|ref|ZP_07343328.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
 gi|302860805|gb|EFL83882.1| iron-sulfur cluster-binding protein [Burkholderiales bacterium
           1_1_47]
          Length = 198

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 6   TENCILCKHTDCV---EVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPV 52
           TE+CI  +   C    E CP       E  +  I  ++C  CGVCE  CP 
Sbjct: 123 TESCIALRTGACTKCKEECPYGAISLDERMVPLIDSEKCNGCGVCEHICPA 173



 Score = 35.1 bits (80), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 18/66 (27%)

Query: 8   NCILCKHTDCVEVCPVDCFYE--------GENFLAIHPDECID-----CGVCEPECPVDA 54
           +C  C    C+EVCP              G+  L    + CI      C  C+ ECP  A
Sbjct: 91  SCDFC--RKCIEVCPTGALLNFIGDTTPIGKAQLT---ESCIALRTGACTKCKEECPYGA 145

Query: 55  IKPDTE 60
           I  D  
Sbjct: 146 ISLDER 151


>gi|301629607|ref|XP_002943929.1| PREDICTED: protein rdxA-like [Xenopus (Silurana) tropicalis]
          Length = 470

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  + CV+VCP                ECI CG+C   C
Sbjct: 264 DCIDC--SLCVQVCPTGIDIRNGLQY-----ECIGCGLCVDAC 299


>gi|301155488|emb|CBW14954.1| predicted 4Fe-4S cluster-containing protein [Haemophilus
          parainfluenzae T3T1]
          Length = 86

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP-VD 53
          M  ++T  C  C    C+  CP +    GE    I P  C +C        C+  CP  +
Sbjct: 1  MALLITNKCTNCD--MCLPECPNEAISIGEEIYVIDPVLCTECVGHYDTPTCQKVCPITN 58

Query: 54 AIKPDTEPGLEL 65
           IKPD E     
Sbjct: 59 CIKPDPEHQESE 70


>gi|297517233|ref|ZP_06935619.1| electron transport complex protein RnfB [Escherichia coli OP50]
          Length = 101

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI--K 56
          M  V+ EN CI C  T C++ CPVD        +  +  D C  C +C   CP   I  +
Sbjct: 17 MVAVIDENNCIGC--TKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQ 74

Query: 57 PDTEPGLELWLKIN 70
          P  E        +N
Sbjct: 75 PVAETPDSWKWDLN 88


>gi|154151233|ref|YP_001404851.1| glutamate synthase (NADPH) [Candidatus Methanoregula boonei 6A8]
 gi|153999785|gb|ABS56208.1| Glutamate synthase (NADPH) [Methanoregula boonei 6A8]
          Length = 503

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          T  C+ C    C+E C    +    + + ++   C+ C  C   CP DAI
Sbjct: 16 TGQCMNCG--RCIENCSYGVYRREGDRIVVNSRNCVACHRCTAFCPRDAI 63


>gi|29653641|ref|NP_819333.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|153208644|ref|ZP_01946896.1| ferredoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154706402|ref|YP_001425124.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161830643|ref|YP_001596239.1| ferredoxin [Coxiella burnetii RSA 331]
 gi|165919779|ref|ZP_02219522.1| ferredoxin [Coxiella burnetii RSA 334]
 gi|212213202|ref|YP_002304138.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212218124|ref|YP_002304911.1| ferredoxin [Coxiella burnetii CbuK_Q154]
 gi|29540903|gb|AAO89847.1| ferredoxin [Coxiella burnetii RSA 493]
 gi|120575830|gb|EAX32454.1| ferredoxin [Coxiella burnetii 'MSU Goat Q177']
 gi|154355688|gb|ABS77150.1| ferredoxin [Coxiella burnetii Dugway 5J108-111]
 gi|161762510|gb|ABX78152.1| ferredoxin [Coxiella burnetii RSA 331]
 gi|165916862|gb|EDR35466.1| ferredoxin [Coxiella burnetii RSA 334]
 gi|212011612|gb|ACJ18993.1| ferredoxin [Coxiella burnetii CbuG_Q212]
 gi|212012386|gb|ACJ19766.1| ferredoxin [Coxiella burnetii CbuK_Q154]
          Length = 81

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE CI C    C   CP D    GE    I+ + C +C        C   CPVD 
Sbjct: 1  MALKITEECINCDV--CEPECPNDAISMGELIYEINSNRCTECVGHFDEPQCRQVCPVDC 58

Query: 55 IKPDTEPGLEL 65
          I  D     E 
Sbjct: 59 IPLDFHESKED 69


>gi|89896541|ref|YP_520028.1| hypothetical protein DSY3795 [Desulfitobacterium hafniense Y51]
 gi|89335989|dbj|BAE85584.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 93

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          E C  CK  +C+ VCP   + E    + +    C++CG C   CP  AI+
Sbjct: 29 ELCKSCKEKNCLLVCPAGLYSEQNGEIIVEWAGCLECGTCRAVCPQKAIE 78


>gi|320355321|ref|YP_004196660.1| NIL domain-containing protein [Desulfobulbus propionicus DSM 2032]
 gi|320123823|gb|ADW19369.1| NIL domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 136

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 9   CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    CV  CP             +A + D CI+C  C   CP  A
Sbjct: 85  CGQCG--ACVVHCPTGALSIVDRATRQVAFNEDSCIECLACVAACPFGA 131


>gi|319937315|ref|ZP_08011722.1| hypothetical protein HMPREF9488_02557 [Coprobacillus sp. 29_1]
 gi|319807681|gb|EFW04274.1| hypothetical protein HMPREF9488_02557 [Coprobacillus sp. 29_1]
          Length = 391

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
          E+CI      C++ CP D      + + I  ++CI C VC  ECP 
Sbjct: 13 EHCIK-----CLKSCPADAISIVNHEVQIDEEKCIHCDVCIKECPA 53


>gi|319640450|ref|ZP_07995172.1| ferredoxin-type protein [Bacteroides sp. 3_1_40A]
 gi|317387937|gb|EFV68794.1| ferredoxin-type protein [Bacteroides sp. 3_1_40A]
          Length = 508

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPEC- 50
           V +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 431 VAQNCIVNTDGVSCGNCARHCPTGAILMVPKDADDGKSLKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 491 SRPFSAIYVE 500



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 15/56 (26%)

Query: 15  TDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPVDAI 55
             C EVCP D  +  +                  CI       CG C   CP  AI
Sbjct: 401 AKCAEVCPTDAIHLADLTEKSSVQIGHAVWVAQNCIVNTDGVSCGNCARHCPTGAI 456



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP        +   +   E       C  +C  C   CP DAI 
Sbjct: 357 AQHCTAC--QLCVSVCPNQVLRPSGDLKHLMQPEMSYERGYCRPECAKCAEVCPTDAIH 413



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C   AIK 
Sbjct: 221 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQGAIKY 268


>gi|307131779|ref|YP_003883795.1| formate dehydrogenase-O, Fe-S subunit [Dickeya dadantii 3937]
 gi|306529308|gb|ADM99238.1| formate dehydrogenase-O, Fe-S subunit [Dickeya dadantii 3937]
          Length = 300

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 155



 Score = 37.1 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDVPRMNKDDNKVY----KCTLCVDRVDVGQEPSCVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   T+  ++
Sbjct: 184 IHFGTKDEMK 193


>gi|294495149|ref|YP_003541642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666148|gb|ADE35997.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 231

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 17/59 (28%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECID----------CGVCEPECP 51
            + + C  C    C+EVCPVD    EG     IH ++C +          CG+C   CP
Sbjct: 175 FINDACSEC--MKCIEVCPVDALTSEG----VIHKEKCAEYMFNVLGGLRCGLCIKVCP 227


>gi|262168762|ref|ZP_06036457.1| sensor kinase CitA [Vibrio cholerae RC27]
 gi|262022880|gb|EEY41586.1| sensor kinase CitA [Vibrio cholerae RC27]
          Length = 138

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/20 (70%), Positives = 17/20 (85%)

Query: 1  MTYVVTENCILCKHTDCVEV 20
          M +VVT+NCI CK+TDCV V
Sbjct: 1  MAFVVTDNCIQCKYTDCVAV 20


>gi|223041743|ref|ZP_03611936.1| electron transport complex protein RnfC [Actinobacillus minor 202]
 gi|223017427|gb|EEF15845.1| electron transport complex protein RnfC [Actinobacillus minor 202]
          Length = 571

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 12/54 (22%)

Query: 8   NCILCKHTDCVEVCPVDC-------FYEGENFL---AIHPDECIDCGVCEPECP 51
            CI C  + C + CPV         F   E+       H D CI+CGVC   CP
Sbjct: 390 ACIRC--SSCSDACPVGLLPQQLYWFARSEDHEKSKEYHLDACIECGVCAYVCP 441



 Score = 33.6 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 24  DCFYEGENFLAIHPD---ECIDCGVCEPECPVD 53
           +C    ++F    P+    CI C  C   CPV 
Sbjct: 372 NCIIAPDHFEYAPPEDERACIRCSSCSDACPVG 404


>gi|218261084|ref|ZP_03476043.1| hypothetical protein PRABACTJOHN_01707 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224231|gb|EEC96881.1| hypothetical protein PRABACTJOHN_01707 [Parabacteroides johnsonii
           DSM 18315]
          Length = 516

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPV 52
           VV      C    C E CP    +            I+PD CI CG CE  CPV
Sbjct: 430 VVNTEEKDCG--ACAEHCPTQAVHMVPYKGTLTIPQINPDLCIGCGGCESICPV 481



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           E C  C   +C   C  +        L +    C+DC  C   C
Sbjct: 232 EACTHCG--NCEHTCKAEAI--DSKNLTVDTSRCVDCFNCVSSC 271



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 13/67 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-----------ENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CV  CP                       I      +C VC   CP  AI
Sbjct: 349 DKCTGC--QICVVRCPSQVLRPTGLEYGLDYMLKPRLAYISSYCNYECTVCSDVCPTGAI 406

Query: 56  KPDTEPG 62
           KP T   
Sbjct: 407 KPLTVEE 413



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 17  CVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDAI 55
           C  +CPV       +  +        + C  CG CE  C  +AI
Sbjct: 206 CNTICPVGALLSLFSRYSFFRITFDKEACTHCGNCEHTCKAEAI 249



 Score = 35.1 bits (80), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 19/80 (23%)

Query: 12  CKH--TDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPECPVD 53
           C +  T C +VCP                       +    ++ +E  DCG C   CP  
Sbjct: 390 CNYECTVCSDVCPTGAIKPLTVEEKTTTQVGIATFFKGRCVVNTEE-KDCGACAEHCPTQ 448

Query: 54  AIKPDTEPGLELWLKINSEY 73
           A+      G     +IN + 
Sbjct: 449 AVHMVPYKGTLTIPQINPDL 468


>gi|154492558|ref|ZP_02032184.1| hypothetical protein PARMER_02192 [Parabacteroides merdae ATCC
           43184]
 gi|154087783|gb|EDN86828.1| hypothetical protein PARMER_02192 [Parabacteroides merdae ATCC
           43184]
          Length = 529

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-----LAIHPDECIDCGVCEPECPV 52
           VV      C    C E CP    +            I+PD CI CG CE  CPV
Sbjct: 443 VVNTEEKDCG--ACAEHCPTQAVHMVPYKGTLTIPQINPDLCIGCGGCESICPV 494



 Score = 39.7 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           E C  C   +C   C  +        L I    C+DC  C   C
Sbjct: 232 EACTHCG--NCEHTCKAEAI--DSKNLTIDTSRCVDCFNCVSSC 271



 Score = 37.1 bits (85), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 13/64 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG-----------ENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C    CV  CP                       I      +C VC   CP  AI
Sbjct: 362 DKCTGC--QICVVRCPSQVLRPTGLEYGLDYMLKPRLAYISSYCNYECTVCSDVCPTGAI 419

Query: 56  KPDT 59
           KP T
Sbjct: 420 KPLT 423



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 17  CVEVCPVDCFYEGENFLAI-----HPDECIDCGVCEPECPVDAI 55
           C  +CPV       +  +        + C  CG CE  C  +AI
Sbjct: 206 CNTICPVGALLSLFSRYSFFRITFDKEACTHCGNCEHTCKAEAI 249



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 19/80 (23%)

Query: 12  CKH--TDCVEVCPVDCFYEG----------------ENFLAIHPDECIDCGVCEPECPVD 53
           C +  T C +VCP                       +    ++ +E  DCG C   CP  
Sbjct: 403 CNYECTVCSDVCPTGAIKPLTIEEKTTTQVGIATFFKGRCVVNTEE-KDCGACAEHCPTQ 461

Query: 54  AIKPDTEPGLELWLKINSEY 73
           A+      G     +IN + 
Sbjct: 462 AVHMVPYKGTLTIPQINPDL 481


>gi|73668279|ref|YP_304294.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
 gi|72395441|gb|AAZ69714.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
          Length = 59

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 7  ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          E C  C    CV+ CPV+     E E    +  DEC++CG CE  CP +AI  +
Sbjct: 8  EECTGCG--TCVDECPVEAIVIDEEEGCAVVDEDECVECGACEEACPNEAITIE 59


>gi|51244862|ref|YP_064746.1| heterodisulfide reductase, subunit A [Desulfotalea psychrophila
           LSv54]
 gi|50875899|emb|CAG35739.2| related to heterodisulfide reductase, subunit A [Desulfotalea
           psychrophila LSv54]
          Length = 1018

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF-------LAIHPDECIDCGVCEPECP 51
             V  + C  C    CV+VCP      G          ++++  +C  CG+C+  CP
Sbjct: 940 ATVDPDFCDGC--ALCVDVCPYGAITLGSRSDDLPSRIISVNEAKCKGCGLCQATCP 994



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           + PD C  C +C   CP  AI
Sbjct: 942 VDPDFCDGCALCVDVCPYGAI 962



 Score = 39.0 bits (90), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 28/94 (29%), Gaps = 33/94 (35%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF------------------LAIHPDECID-- 42
           YV  + CI C    C + CP     E +                      I P  C+   
Sbjct: 104 YVDMDKCIACG--ACTDKCPKKVDSEYDEKTGKRKAIFVKYAQAVPLKYQIDPLNCLRLT 161

Query: 43  ----------CGVCEPECPVDAI-KPDTEPGLEL 65
                     CG CE  C   AI   DTE   EL
Sbjct: 162 AMRNGKEKLPCGFCEQVCDAGAINYNDTEKTHEL 195



 Score = 37.4 bits (86), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWP 78
            +  D+CI CG C  +CP   +  + +        I  +YA   P
Sbjct: 104 YVDMDKCIACGACTDKCPKK-VDSEYDEKTGKRKAIFVKYAQAVP 147


>gi|127511286|ref|YP_001092483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636581|gb|ABO22224.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 215

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C  C++  CV VCP    +       + +   +C  C  C   CP +A   ++E  
Sbjct: 85  SCQQCQNAPCVSVCPTGAAHRDPKTGIVTMDASKCAGCKYCIAACPYNARYINSETD 141


>gi|107023180|ref|YP_621507.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia AU 1054]
 gi|116690262|ref|YP_835885.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia HI2424]
 gi|170733601|ref|YP_001765548.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia MC0-3]
 gi|254247665|ref|ZP_04940986.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia
           PC184]
 gi|254251869|ref|ZP_04945187.1| Formate hydrogenlyase subunit 6/NADH [Burkholderia dolosa AUO158]
 gi|115502519|sp|Q1BV21|NUOI_BURCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633513|sp|A0K915|NUOI_BURCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737385|sp|B1JVN3|NUOI_BURCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|105893369|gb|ABF76534.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia AU 1054]
 gi|116648351|gb|ABK08992.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia HI2424]
 gi|124872441|gb|EAY64157.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia
           PC184]
 gi|124894478|gb|EAY68358.1| Formate hydrogenlyase subunit 6/NADH [Burkholderia dolosa AUO158]
 gi|169816843|gb|ACA91426.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia
           MC0-3]
          Length = 162

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|68249124|ref|YP_248236.1| putative ferredoxin-like protein [Haemophilus influenzae
          86-028NP]
 gi|145630295|ref|ZP_01786076.1| putative ferredoxin-like protein [Haemophilus influenzae R3021]
 gi|145635392|ref|ZP_01791094.1| putative ferredoxin-like protein [Haemophilus influenzae PittAA]
 gi|145640503|ref|ZP_01796087.1| putative ferredoxin-like protein [Haemophilus influenzae R3021]
 gi|148825199|ref|YP_001289952.1| putative ferredoxin-like protein [Haemophilus influenzae PittEE]
 gi|229844314|ref|ZP_04464454.1| putative ferredoxin-like protein [Haemophilus influenzae 6P18H1]
 gi|229846610|ref|ZP_04466718.1| putative ferredoxin-like protein [Haemophilus influenzae 7P49H1]
 gi|319775552|ref|YP_004138040.1| putative ferredoxin-like protein [Haemophilus influenzae F3047]
 gi|68057323|gb|AAX87576.1| putative ferredoxin-like protein [Haemophilus influenzae
          86-028NP]
 gi|144984030|gb|EDJ91467.1| putative ferredoxin-like protein [Haemophilus influenzae R3021]
 gi|145267398|gb|EDK07400.1| putative ferredoxin-like protein [Haemophilus influenzae PittAA]
 gi|145275089|gb|EDK14951.1| putative ferredoxin-like protein [Haemophilus influenzae 22.4-21]
 gi|148715359|gb|ABQ97569.1| putative ferredoxin-like protein [Haemophilus influenzae PittEE]
 gi|229810703|gb|EEP46421.1| putative ferredoxin-like protein [Haemophilus influenzae 7P49H1]
 gi|229812563|gb|EEP48252.1| putative ferredoxin-like protein [Haemophilus influenzae 6P18H1]
 gi|309972322|gb|ADO95523.1| Putative 4Fe-4S ferredoxin-type protein [Haemophilus influenzae
          R2846]
 gi|317450143|emb|CBY86357.1| Putative ferredoxin-like protein [Haemophilus influenzae F3047]
          Length = 86

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP-VD 53
          M   +T  C  C    C+  CP +    G+    I P  C +C        C+  CP  +
Sbjct: 1  MALFITSKCTNCD--MCLPECPNEAISIGDEIYVIDPILCTECVGHYDTPTCQKVCPITN 58

Query: 54 AIKPDTEPGL 63
           IKPD E   
Sbjct: 59 CIKPDPEHQE 68


>gi|329115328|ref|ZP_08244082.1| Formate dehydrogenase-O iron-sulfur subunit [Acetobacter pomorum
           DM001]
 gi|326695307|gb|EGE46994.1| Formate dehydrogenase-O iron-sulfur subunit [Acetobacter pomorum
           DM001]
          Length = 311

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           E C+ C+   C++ CP      +  N +     ++CI CG C   CP D
Sbjct: 99  EGCMHCEDPGCLKACPSPGAILQFANGIVDFQSEQCIGCGYCIAGCPFD 147



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N       +C  C           C   CP  A
Sbjct: 131 SEQCIGCGY--CIAGCPFDIPRINTKDNKAY----KCTLCADRVAVGQEPACVKTCPTGA 184

Query: 55  IKPDTEPGLEL 65
           I   ++  ++ 
Sbjct: 185 ISFGSKADMKD 195


>gi|325278986|ref|YP_004251528.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712]
 gi|324310795|gb|ADY31348.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712]
          Length = 1076

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 11  LCKHT----DCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
            C +      C   CP     +        I  D+CI C  C  +CP  AI         
Sbjct: 460 DCLYGFACNPCSFACPHGAITKTSTSTVPVIDYDKCIGCMECVYQCPGLAIFGYDLRKDN 519

Query: 65  LWLKI 69
           L+L I
Sbjct: 520 LFLPI 524


>gi|312875814|ref|ZP_07735804.1| Indolepyruvate ferredoxin oxidoreductase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797295|gb|EFR13634.1| Indolepyruvate ferredoxin oxidoreductase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 506

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           YV  E C  CK   C+ + CP     E      I  + C+ CG+CE  C   AI    E 
Sbjct: 452 YVDFEKCKNCKV--CLSLGCPAISIKEKP---TIDENLCLACGMCEDVCKFGAISSQKEQ 506


>gi|304558979|gb|ADM41643.1| Electron transport complex protein RnfC [Edwardsiella tarda FL6-60]
          Length = 773

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 7   ENCILCKHTDCVEVCP----------VDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + CI C    C +VCP               E +     H  ECI+CG C   CP +
Sbjct: 376 QPCIRCG--ACADVCPARLLPQQLYWYSQGKEHDKARDYHLQECIECGACAYVCPSN 430


>gi|237734473|ref|ZP_04564954.1| electron transport complex [Mollicutes bacterium D7]
 gi|229382293|gb|EEO32384.1| electron transport complex [Coprobacillus sp. D7]
          Length = 442

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 12/55 (21%)

Query: 8   NCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPV 52
            CI C    CV+VCP+              + ENFL +H ++C++CG C   CP 
Sbjct: 366 ACIHCG--RCVDVCPIGLIPQLLYRYARTGDKENFLKVHGNDCMECGCCTFTCPA 418



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 37  PDECIDCGVCEPECPVDAI 55
           P  CI CG C   CP+  I
Sbjct: 364 PTACIHCGRCVDVCPIGLI 382


>gi|254519300|ref|ZP_05131356.1| polyferredoxin [Clostridium sp. 7_2_43FAA]
 gi|226913049|gb|EEH98250.1| polyferredoxin [Clostridium sp. 7_2_43FAA]
          Length = 265

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            CI CK   C   CP D  +   N   +  D+C++C +C  +CP  AIK
Sbjct: 214 ACIGCKL--CERNCPKDAVHVTNNLAKVDYDKCVNCQLCTKKCPTGAIK 260



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
             CV VC             ++ D+C +CG C   CP   I+       ++ ++ N
Sbjct: 145 GSCVSVCEFGALDIVNGIAKVNVDKCTNCGACINICPKGLIES-VPVSKKVRVECN 199


>gi|126733616|ref|ZP_01749363.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Roseobacter sp.
           CCS2]
 gi|126716482|gb|EBA13346.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Roseobacter sp.
           CCS2]
          Length = 438

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP      EG+        ECI C +C   C
Sbjct: 222 DCIDC--MACVNVCPAGIDIREGQQM------ECITCALCIDAC 257



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 3/25 (12%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLE 64
           CIDC  C   CP      D   G +
Sbjct: 223 CIDCMACVNVCPAG---IDIREGQQ 244


>gi|126466337|ref|YP_001041446.1| pyruvate ferredoxin oxidoreductase, delta subunit
          [Staphylothermus marinus F1]
 gi|126015160|gb|ABN70538.1| pyruvate ferredoxin oxidoreductase, delta subunit
          [Staphylothermus marinus F1]
          Length = 96

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C+ C    C   CP          + ++ D C  CG+C  ECPV+AI    EP
Sbjct: 44 CVKC--MLCWLFCPDMAIIWDGEKIVVNYDYCKGCGICAHECPVNAISMVPEP 94


>gi|123444304|ref|YP_001008271.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122091265|emb|CAL14151.1| formate dehydrogenase-O, iron-sulfur subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 323

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKEAMKE 196


>gi|160900868|ref|YP_001566450.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Delftia acidovorans SPH-1]
 gi|160366452|gb|ABX38065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Delftia
          acidovorans SPH-1]
          Length = 87

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP D    GE +  I   +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNDAISMGEEYYEIEHSKCTECVGHFDEPQCVQICPVAC 58

Query: 55 I 55
          I
Sbjct: 59 I 59



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/23 (69%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP DAI    E
Sbjct: 7  DECINCDVCEPECPNDAISMGEE 29


>gi|157414630|ref|YP_001481886.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81116]
 gi|4105265|gb|AAD02330.1| ferredoxin [Campylobacter jejuni]
 gi|157385594|gb|ABV51909.1| ferredoxin [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747270|gb|ADN90540.1| Ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni M1]
 gi|315931589|gb|EFV10555.1| ferredoxin [Campylobacter jejuni subsp. jejuni 327]
          Length = 94

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV          EGE+   ++ ++C++C        C  
Sbjct: 1  MAVKITDICIACG--SCIDECPVSAIVDDVNNPEGEDRYYVYANKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLELWLKIN 70
                D CI CG C  ECPV AI  D    E     ++  N
Sbjct: 1  MAVKITDICIACGSCIDECPVSAIVDDVNNPEGEDRYYVYAN 42


>gi|310778117|ref|YP_003966450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
 gi|309747440|gb|ADO82102.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
          polytropus DSM 2926]
          Length = 55

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 3  YVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          YV+  E CI C    C   CPV      +    I  D CIDCG C   CPV+ I
Sbjct: 2  YVIDKEACIACG--ACEGTCPVSAISAADGKYEI-SDACIDCGACAGVCPVECI 52



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAI 55
             I  + CI CG CE  CPV AI
Sbjct: 1  MYVIDKEACIACGACEGTCPVSAI 24


>gi|317055293|ref|YP_004103760.1| Fe-S cluster domain-containing protein [Ruminococcus albus 7]
 gi|315447562|gb|ADU21126.1| Fe-S cluster domain protein [Ruminococcus albus 7]
          Length = 561

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 4  VVT--ENCILCKHTDCVEVCP-----VDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
          ++T  + C+ C    CV  CP     +    EG  F+  ++PD CI CG C   C   A
Sbjct: 5  IITRPDKCVGCN--SCVRSCPAPEANITKMLEGGKFVTTVNPDRCIGCGSCVKSCNHGA 61


>gi|299143637|ref|ZP_07036717.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518122|gb|EFI41861.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 271

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           CI CK   C   CP+      +N   I P +C+ C  C  +CP  A   D E
Sbjct: 201 CIDCK--ICARECPLGSINF-DNVEEI-PGKCMKCCACIKKCPTGAKYFDDE 248



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 21  CPVDCFYEGENFLAIHPDE----CIDCGVCEPECPVDAIKPD 58
            P D    G NF+ I P      CIDC +C  ECP+ +I  D
Sbjct: 178 TPRDRHGNGINFVKIKPKTDMSLCIDCKICARECPLGSINFD 219


>gi|255532381|ref|YP_003092753.1| cytochrome c oxidase accessory protein CcoG [Pedobacter heparinus
           DSM 2366]
 gi|255345365|gb|ACU04691.1| cytochrome c oxidase accessory protein CcoG [Pedobacter heparinus
           DSM 2366]
          Length = 466

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI CK   CV+VCP       G         EC++C  C   C
Sbjct: 263 DCIDCKL--CVDVCPTGIDIRNGTQM------ECVNCTACIDAC 298


>gi|291287574|ref|YP_003504390.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884734|gb|ADD68434.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 546

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 27/81 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEG--------ENFLAIHP-----------------DECI 41
           + C LC    CV  CP      G         + L   P                 + C 
Sbjct: 23  DRCTLCG--KCVAACPFKAIEAGVEKRRKVVSDHLTPEPKVEFKTIPVIRQVVNEYEFCR 80

Query: 42  DCGVCEPECPVDAIKPDTEPG 62
            CG+CE  CP +AI P+  P 
Sbjct: 81  GCGICERVCPNEAINPERNPD 101



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTE 60
          PD C  CG C   CP  AI+   E
Sbjct: 22 PDRCTLCGKCVAACPFKAIEAGVE 45


>gi|206560695|ref|YP_002231460.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia J2315]
 gi|226737386|sp|B4E5L4|NUOI_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|198036737|emb|CAR52637.1| putative NADH dehydrogenase I chain I [Burkholderia cenocepacia
           J2315]
          Length = 162

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|209884301|ref|YP_002288158.1| beta subunit of formate dehydrogenase [Oligotropha carboxidovorans
           OM5]
 gi|209872497|gb|ACI92293.1| beta subunit of formate dehydrogenase [Oligotropha carboxidovorans
           OM5]
          Length = 312

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +     D+CI CG C   CP +
Sbjct: 110 DGCMHCEDPGCLKACPAPGAIVQYSNGIVDFVHDKCIGCGYCVKGCPFN 158


>gi|167625352|ref|YP_001675646.1| nitrate reductase subunit beta [Shewanella halifaxensis HAW-EB4]
 gi|167355374|gb|ABZ77987.1| nitrate reductase, beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 519

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  C   CP    Y  + +  + I  D+C    +C   CP   I  + + G
Sbjct: 182 CEHCLNPACAASCPSGAIYKRQDDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSG 237


>gi|163733951|ref|ZP_02141393.1| RdxB protein [Roseobacter litoralis Och 149]
 gi|161393062|gb|EDQ17389.1| RdxB protein [Roseobacter litoralis Och 149]
          Length = 478

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCPV     +G+        ECI C +C   C
Sbjct: 260 DCIDC--MACVNVCPVGIDIRDGQQM------ECITCALCIDAC 295



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 3/25 (12%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLE 64
           CIDC  C   CPV     D   G +
Sbjct: 261 CIDCMACVNVCPVG---IDIRDGQQ 282


>gi|150003163|ref|YP_001297907.1| putative ferredoxin-type protein [Bacteroides vulgatus ATCC 8482]
 gi|149931587|gb|ABR38285.1| putative ferredoxin-type protein [Bacteroides vulgatus ATCC 8482]
          Length = 508

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPEC- 50
           V +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 431 VAQNCIVNTDGVSCGNCARHCPTGAILMVPKDADDGKSLKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 491 SRPFSAIYVE 500



 Score = 37.8 bits (87), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 15/56 (26%)

Query: 15  TDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPVDAI 55
             C EVCP D  +  +                  CI       CG C   CP  AI
Sbjct: 401 AKCAEVCPTDAIHLADLTEKSSVQIGHAVWVAQNCIVNTDGVSCGNCARHCPTGAI 456



 Score = 37.1 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP        +   +   E       C  +C  C   CP DAI 
Sbjct: 357 AQHCTAC--QLCVSVCPNQVLRPSGDLKHLMQPEMSYERGYCRPECAKCAEVCPTDAIH 413



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C   AIK 
Sbjct: 221 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQGAIKY 268


>gi|145592470|ref|YP_001154472.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145284238|gb|ABP51820.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 132

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 3   YVVTEN--CILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++V +   CI C    C  VCP           G+ +  I    CI CG C   CP  ++
Sbjct: 38  FIVNDRSKCISC--QLCEAVCPAKAIKFHLEENGKRYPGIDWGRCILCGYCVDACPTGSL 95

Query: 56  KPDTEPGLELWLKIN 70
           +  T+  +  W  +N
Sbjct: 96  QHTTDVEI-TWRDLN 109


>gi|11498973|ref|NP_070206.1| heterodisulfide reductase, subunit A (hdrA-2) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2649195|gb|AAB89867.1| heterodisulfide reductase, subunit A (hdrA-2) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 659

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 28/92 (30%), Gaps = 40/92 (43%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGE--------NFLAI------------HPDECI 41
           TYV  + CI C    CVE CP     E E          + I             P  C+
Sbjct: 233 TYVDWDKCIGCG--ACVEACPPRAVTEDEFNEGLTKRRAMYIASPYAIPRKAVHDPKSCV 290

Query: 42  DCGV------------------CEPECPVDAI 55
           +CG                   CE  CP  AI
Sbjct: 291 NCGKKTLGTRRFLRGGKEYLAPCEKACPTGAI 322



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           C  C    C   CP +               C  CG+C   CP +A+
Sbjct: 598 CTGCG--ICASACPYEAISVNGRAEV-DTRRCKGCGICSSVCPANAV 641



 Score = 40.5 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDAIKPDT 59
               +  D+CI CG C   CP  A+  D 
Sbjct: 231 KQTYVDWDKCIGCGACVEACPPRAVTEDE 259



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           +    C  CG+C   CP +AI
Sbjct: 593 VDEKLCTGCGICASACPYEAI 613


>gi|13542329|ref|NP_112017.1| putative ATPase RIL [Thermoplasma volcanium GSS1]
          Length = 589

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIH---PD--------ECIDCGVCEPECPVDAIKPDTE 60
           C    C   C   C     + +AI    PD         CI CG+C   CP  AI+  T 
Sbjct: 11  CHPKKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAIRIVTL 70

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           P      ++N     ++     +  SLP       V  K       N
Sbjct: 71  PD-----ELNKNVFHRYGVNGFRIYSLP-----TVVPGKVSAILGQN 107


>gi|89894000|ref|YP_517487.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89333448|dbj|BAE83043.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 196

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
            C  C   +C  VCP   F + ++ +  I    C  C +C   CP DA + 
Sbjct: 63  ACNHCDSPECFRVCPQHAFNKRKDGIVEIDSSLCNGCRLCVKACPYDAPQY 113


>gi|14325764|dbj|BAB60667.1| RNase L inhibitor [Thermoplasma volcanium GSS1]
          Length = 592

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIH---PD--------ECIDCGVCEPECPVDAIKPDTE 60
           C    C   C   C     + +AI    PD         CI CG+C   CP  AI+  T 
Sbjct: 14  CHPKKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAIRIVTL 73

Query: 61  PGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPN 107
           P      ++N     ++     +  SLP       V  K       N
Sbjct: 74  PD-----ELNKNVFHRYGVNGFRIYSLP-----TVVPGKVSAILGQN 110


>gi|87119910|ref|ZP_01075806.1| probable ferredoxin [Marinomonas sp. MED121]
 gi|86164612|gb|EAQ65881.1| probable ferredoxin [Marinomonas sp. MED121]
          Length = 470

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV VCP     +  + L I   +CI C +C   C     K D   GL  + 
Sbjct: 267 DCIDCNQ--CVHVCP--AGIDIRDGLQI---QCIGCALCIDACDSVMEKMDYPKGLISYT 319

Query: 68  KIN 70
             N
Sbjct: 320 TEN 322


>gi|84502452|ref|ZP_01000588.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family protein
           [Oceanicola batsensis HTCC2597]
 gi|84389264|gb|EAQ02061.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family protein
           [Oceanicola batsensis HTCC2597]
          Length = 527

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 5   VTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           V  +CI C    CV VCP+     EG+        ECI C +C   C     K     GL
Sbjct: 286 VLGDCIDCN--ACVAVCPMGIDIREGQQM------ECITCALCIDACDDVMAKIGRPRGL 337

Query: 64  ELWLKINSE 72
             +L ++ E
Sbjct: 338 IDYLALDDE 346


>gi|330840005|ref|YP_004414585.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
 gi|329747769|gb|AEC01126.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Selenomonas sputigena ATCC 35185]
          Length = 357

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 15 TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C +VCP   F  G      HPD CI+CG+C   CP  A++
Sbjct: 21 RACEDVCPAGAFRWG----VPHPDLCIECGLCTAVCPAAAVE 58



 Score = 41.3 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 9   CILCKHTDCVEVCPVDCF---YEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           C  C    CV +CP        EGE+F LA  P  C  CG+C   CP  A++    P  +
Sbjct: 269 CNACGF--CVRLCPHGALAAEIEGEDFVLAFTPQLCTACGLCTARCPKSALRLAASPTAK 326

Query: 65  LW 66
            W
Sbjct: 327 RW 328


>gi|222445881|ref|ZP_03608396.1| hypothetical protein METSMIALI_01527 [Methanobrevibacter smithii
          DSM 2375]
 gi|222435446|gb|EEE42611.1| hypothetical protein METSMIALI_01527 [Methanobrevibacter smithii
          DSM 2375]
          Length = 167

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C++  CV++CP +             ++CI CG+C   CP  AI
Sbjct: 44 CQHCENAPCVKICPTNAMTTDGVKT----EDCIGCGLCSIICPFGAI 86


>gi|219853309|ref|YP_002467741.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Methanosphaerula palustris E1-9c]
 gi|219547568|gb|ACL18018.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Methanosphaerula palustris E1-9c]
          Length = 589

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 4   VVTENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           ++T+ C  C    C+   CP       +    ++ D C  CGVC   CP  AI
Sbjct: 536 ILTDRCTGC--RACIRFGCP--AIEFEDGKAVVN-DLCSGCGVCTAICPFGAI 583


>gi|212636696|ref|YP_002313221.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212558180|gb|ACJ30634.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 477

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV+VCP                ECI+CG C   C
Sbjct: 276 DCVDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDAC 311


>gi|212224106|ref|YP_002307342.1| hypothetical protein TON_0957 [Thermococcus onnurineus NA1]
 gi|212009063|gb|ACJ16445.1| 3'-phosphoadenosine 5'-phosphosulfate reductase [Thermococcus
           onnurineus NA1]
          Length = 630

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C+ C    CV  CP            + ++P+ CI C  C   CP+  IK   E   
Sbjct: 574 ECVGCGV--CVGKCPEGALSIDPVSKKIMVNPELCIHCRECMDVCPLLKIKNPEEGSQ 629


>gi|182419871|ref|ZP_02951109.1| hydrogenase subunit [Clostridium butyricum 5521]
 gi|237667120|ref|ZP_04527104.1| hydrogenase large subunit domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376240|gb|EDT73824.1| hydrogenase subunit [Clostridium butyricum 5521]
 gi|237655468|gb|EEP53024.1| hydrogenase large subunit domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 456

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 8   NCILCKHTD--CVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           NCI  K     C   CP +            I  D CI+CG+C   C    I    E
Sbjct: 84  NCIKSKDDKFTCEAACPFNAIKYDTTNKTTYISKDICINCGICVDSCKGGRILDKVE 140


>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
 gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
          Length = 600

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           C  C  T C + CP             I   +CI CGVC   C   AI
Sbjct: 552 CKGC--TLCAKNCPAGAISGAVRAPHVIDQSKCIKCGVCMDNCRFSAI 597



 Score = 39.0 bits (90), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 33  LAIHPDECIDCGVCEPECPVDAI 55
             I P +C  C +C   CP  AI
Sbjct: 545 YTIDPAKCKGCTLCAKNCPAGAI 567


>gi|126464923|ref|YP_001040032.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Staphylothermus marinus F1]
 gi|126013746|gb|ABN69124.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Staphylothermus marinus F1]
          Length = 161

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 17 CVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          C  VCP +     +  +   ++PD+CI CGVC P+CP  A+ 
Sbjct: 45 CANVCPFNAIEMEKIYDLPRVNPDKCIGCGVCVPQCPGLAMF 86


>gi|153004163|ref|YP_001378488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|166918784|sp|A7H9V8|NUOI_ANADF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|152027736|gb|ABS25504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 14/63 (22%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENF-----------LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C   CP  C Y E   +             I    CI CG C   CP DAI+
Sbjct: 91  CVAC--YMCATACPAQCIYIEAGEYADDPIEKYPVKFVIDELRCIVCGFCVEACPKDAIR 148

Query: 57  PDT 59
            D+
Sbjct: 149 MDS 151


>gi|91794283|ref|YP_563934.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella denitrificans
           OS217]
 gi|91716285|gb|ABE56211.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella denitrificans
           OS217]
          Length = 494

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV+VCP                ECI+CG C   C
Sbjct: 291 DCVDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDAC 326


>gi|15679378|ref|NP_276495.1| hypothetical protein MTH1379 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622489|gb|AAB85856.1| conserved protein (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 236

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C+       CP D    G   + I    C  CG C   CP  A+
Sbjct: 146 ELCRGCEPCLAAAACPEDAIVPG---VEIRLLSCRGCGACRTACPHGAV 191


>gi|127514011|ref|YP_001095208.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126639306|gb|ABO24949.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 480

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV+VCP                ECI+CG C   C
Sbjct: 270 DCVDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDAC 305


>gi|114565055|ref|YP_752569.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336348|gb|ABI73730.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 487

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV+VCP                ECI+CG C   C
Sbjct: 272 DCVDCNL--CVDVCPTGIDIRNGLQY-----ECINCGACVDAC 307


>gi|332295890|ref|YP_004437813.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178993|gb|AEE14682.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 137

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C  VCP +     ++    +  ++CI C  C   C V+A+  D+E
Sbjct: 52  CRACFDPPCAAVCPTNALEVRKDGGVNLISEKCIGCKNCVEACTVNAVFWDSE 104



 Score = 37.4 bits (86), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           ++E CI CK  +CVE C V+  +         P+ C  CG C   CP   +  + E
Sbjct: 80  ISEKCIGCK--NCVEACTVNAVFWDSETN--KPNICTYCGFCAMNCPHHVLYFNKE 131


>gi|310827563|ref|YP_003959920.1| quinone oxidoreductase [Eubacterium limosum KIST612]
 gi|308739297|gb|ADO36957.1| quinone oxidoreductase [Eubacterium limosum KIST612]
          Length = 388

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 7/48 (14%)

Query: 8  NCILCKHTDCVEVCPVDCF-----YEGENFLAIHPDECIDCGVCEPEC 50
           C  C  T C  +CP +        EG  +  I+ + CI+CG C   C
Sbjct: 9  ECCGC--TACKSICPQNAIQMKQNKEGFFYPVINENNCIECGFCTKVC 54


>gi|301061492|ref|ZP_07202256.1| putative Indolepyruvate oxidoreductase subunit IorA [delta
           proteobacterium NaphS2]
 gi|300444410|gb|EFK08411.1| putative Indolepyruvate oxidoreductase subunit IorA [delta
           proteobacterium NaphS2]
          Length = 187

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 11  LCK-HTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            CK H DC+    CP   + EG + + I  + CI C VC   CP +AI P
Sbjct: 137 KCKNHRDCLNLLACPA-MYLEG-DQVEIDKNACIGCTVCAQVCPENAIVP 184


>gi|296108948|ref|YP_003615897.1| NIL domain protein [Methanocaldococcus infernus ME]
 gi|295433762|gb|ADG12933.1| NIL domain protein [Methanocaldococcus infernus ME]
          Length = 132

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           E C+ C    CV  CP+D  Y  + +  +    +EC+ C  C   CP  AI+
Sbjct: 80  EKCVHCG--CCVTQCPLDVIYIDKSDYSVVFKEEECVGCKNCLKACPFKAIE 129


>gi|226227060|ref|YP_002761166.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27]
 gi|226090251|dbj|BAH38696.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27]
          Length = 151

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGEN--------FLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C  VCP +C     GE+           I    CI CG C+  CP +AI 
Sbjct: 55  CVACGL--CPTVCPANCIKLTPGEDEQGNRYPLVFEIDEFRCIFCGYCQEVCPEEAIH 110


>gi|224371564|ref|YP_002605728.1| putative dissimilatory sulfite reductase [Desulfobacterium
           autotrophicum HRM2]
 gi|223694281|gb|ACN17564.1| putative dissimilatory sulfite reductase [Desulfobacterium
           autotrophicum HRM2]
          Length = 267

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPVD 53
           V  E CI C    CV+ C         +     I  D C+ C  C   CP  
Sbjct: 146 VTEEACIGCG--ACVDACQEGAIALTGDGEQPEIDFDRCLMCAKCVKACPTG 195



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 8/46 (17%)

Query: 18  VEVCPVDCFYEGENFLAIH--------PDECIDCGVCEPECPVDAI 55
           V  CP  C       + I          + CI CG C   C   AI
Sbjct: 121 VAQCPNGCSQPQIKGIGIISAARPGVTEEACIGCGACVDACQEGAI 166


>gi|167039777|ref|YP_001662762.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300914979|ref|ZP_07132294.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307724899|ref|YP_003904650.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
 gi|166854017|gb|ABY92426.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300888703|gb|EFK83850.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307581960|gb|ADN55359.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
          Length = 291

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + CI C    C  +C  D          ++P  C  CG+C  +CPV+AIK
Sbjct: 66  DKCIECGL--CERLCRFDAISN----FEVNPYYCEGCGLCMYKCPVEAIK 109



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C  DAI
Sbjct: 57 GKETAVIDKDKCIECGLCERLCRFDAI 83


>gi|10802771|gb|AAG23607.1|AF244658_1 carbon monoxide dehydrogenase [Carboxydothermus hydrogenoformans]
          Length = 128

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  CK   C+E  P    FY+ E  +    ++C  CG+CE  CP  AI+
Sbjct: 60  CKHCKRAKCIEAYPQGALFYDEEGRVVCSEEKCTGCGLCEKACPFHAIR 108


>gi|15599326|ref|NP_252820.1| iron-sulfur protein [Pseudomonas aeruginosa PAO1]
 gi|9950335|gb|AAG07518.1|AE004829_8 probable iron-sulfur protein [Pseudomonas aeruginosa PAO1]
          Length = 573

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP        + L I    CI C  C   C
Sbjct: 372 DCIDC--QQCVQVCPTGIDIR--DGLQI---ACIGCAACVDAC 407


>gi|238783091|ref|ZP_04627118.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia bercovieri
           ATCC 43970]
 gi|238716092|gb|EEQ08077.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia bercovieri
           ATCC 43970]
          Length = 323

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKESMKE 196


>gi|330507413|ref|YP_004383841.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328928221|gb|AEB68023.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 128

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            C+ C    CV +CP   F   +  +     +CI CG C   CP  A+K
Sbjct: 78  ECVNCG--ACVSICPTGTFRFEDWRVVADSGKCIQCGACVVGCPQRALK 124


>gi|328952283|ref|YP_004369617.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfobacca
          acetoxidans DSM 11109]
 gi|328452607|gb|AEB08436.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfobacca
          acetoxidans DSM 11109]
          Length = 396

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 1  MTYVVT-ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          M+ ++  E C  C    C++ CP    Y  +  L +  D C  CG C   C   A
Sbjct: 1  MSVIINLERCTGCGQ--CLDACPFGLLYLLDGRLMVD-DGCTLCGACVEVCEYGA 52


>gi|323966867|gb|EGB62296.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251443|gb|EGE63129.1| formate hydrogenlyase subunit 6 [Escherichia coli STEC_7v]
          Length = 180

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|239816475|ref|YP_002945385.1| NADH dehydrogenase subunit I [Variovorax paradoxus S110]
 gi|239803052|gb|ACS20119.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus S110]
          Length = 181

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 80  ERCIACKL--CEAVCPALAITIESDVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 136



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38  DECIDCGVCEPECPVDAIKPDTE 60
           + CI C +CE  CP  AI  +++
Sbjct: 80  ERCIACKLCEAVCPALAITIESD 102


>gi|119873473|ref|YP_931480.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Pyrobaculum islandicum DSM 4184]
 gi|119674881|gb|ABL89137.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Pyrobaculum islandicum DSM 4184]
          Length = 129

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C+ C    CV  CP          L      C  CG+C   CP  AIK  T   L  
Sbjct: 12 GDRCVKCNL--CVRACPTSALRP-PRVLY---SRCTGCGLCTYTCPRGAIKMATRLSLAA 65

Query: 66 WLKI 69
          ++ I
Sbjct: 66 YVFI 69



 Score = 34.4 bits (78), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 35 IHPDECIDCGVCEPECPVDAIKP 57
          I  D C+ C +C   CP  A++P
Sbjct: 10 IDGDRCVKCNLCVRACPTSALRP 32


>gi|222054475|ref|YP_002536837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563764|gb|ACM19736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 368

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           E C  C    C++ C  D     E   AI  +EC+ CG C   C
Sbjct: 193 EFCTGCG--ACLKSCAHDAIAIIEGKAAIDQEECVGCGRCVTAC 234


>gi|48477469|ref|YP_023175.1| ferredoxin like protein [Picrophilus torridus DSM 9790]
 gi|48430117|gb|AAT42982.1| ferredoxin like protein [Picrophilus torridus DSM 9790]
          Length = 88

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEP 61
          V  + C  CK   CV VCP   +      + I H + C++C      CP  +IK     
Sbjct: 22 VNLDICAKCKEKPCVRVCPAGTYEPDPEKIMIVHYERCVECSAALVACPYGSIKFSYPE 80


>gi|77362066|ref|YP_341640.1| putative 4Fe-4S ferredoxin [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76876977|emb|CAI89194.1| putative 4Fe-4S ferredoxin [Pseudoalteromonas haloplanktis
          TAC125]
          Length = 84

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++   CI C    C   CP +  Y G     I P +C +C        C   CP+D 
Sbjct: 1  MALLINNKCINCD--MCDPECPNEAIYMGAKIYQIDPSKCTECVGHYDKPTCVSVCPIDC 58

Query: 55 IKPD 58
          IKPD
Sbjct: 59 IKPD 62


>gi|332878640|ref|ZP_08446359.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332683415|gb|EGJ56293.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 191

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C  VCP D   + E  +    D  +CI C  C   CP    K   +
Sbjct: 60  CMHCDDPICANVCPADAIVKDEYGIVHSADVSKCIGCANCVLSCPFGVPKIPDQ 113


>gi|332017503|gb|EGI58223.1| ATP-binding cassette sub-family E member 1 [Acromyrmex
          echinatior]
          Length = 602

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C   CPV      C     N    AI  + CI CG+C  +CP +A
Sbjct: 13 VNSDKCKPKRCR-QECKRSCPVVRMGKLCIEVNPNSKIAAISEELCIGCGICVKKCPFEA 71

Query: 55 I 55
          I
Sbjct: 72 I 72


>gi|323699427|ref|ZP_08111339.1| glycyl-radical enzyme activating protein family [Desulfovibrio sp.
           ND132]
 gi|323459359|gb|EGB15224.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           desulfuricans ND132]
          Length = 306

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           TE C     T C++ CP       E+ L  + P +C+ C  C   C  +A
Sbjct: 60  TEKC-----TRCIDNCPQGAISPSEDHLIVMDPAKCVQCHTCAKHCAANA 104


>gi|320160963|ref|YP_004174187.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila
           UNI-1]
 gi|319994816|dbj|BAJ63587.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila
           UNI-1]
          Length = 609

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEGENF--------LAIHPDECIDCGVCEPECPVDA 54
           VV E C  C  T C  V CP     + E            I P  C  C +C   CP DA
Sbjct: 539 VVEEKCNGC--TMCFRVGCP--AISKSEKLDPRYQRPLAVIDPSLCTGCEICAQVCPRDA 594

Query: 55  I 55
           I
Sbjct: 595 I 595


>gi|217966695|ref|YP_002352201.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Dictyoglomus turgidum DSM 6724]
 gi|217335794|gb|ACK41587.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
          [Dictyoglomus turgidum DSM 6724]
          Length = 92

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          C  C    C   CP          + I  D C  CGVC  ECPV AI    E 
Sbjct: 41 CTTCMF--CWLFCPDSAVKFDGQKVYIDYDYCKGCGVCAAECPVKAITMKEEE 91


>gi|197124200|ref|YP_002136151.1| formate dehydrogenase subunit beta [Anaeromyxobacter sp. K]
 gi|196174049|gb|ACG75022.1| formate dehydrogenase, beta subunit [Anaeromyxobacter sp. K]
          Length = 291

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +V + C+ C    C++ CP      +  N +     D+CI CG C+  CP +
Sbjct: 94  IVKDGCLHCAEPGCLKACPAPGAIVQYANGIVDFQQDQCIGCGYCQTGCPFN 145


>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [uncultured methanogenic
           archaeon RC-I]
 gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [uncultured methanogenic
           archaeon RC-I]
          Length = 262

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAIKPDTEPG 62
            V++ C  CK   C++ CP   F   +N L +    +C  C +C   C   AI  D    
Sbjct: 166 TVSDKCDQCK--ACIDECPRGVFKIEKNKLVVTDQYKCSMCKLCVDVCDAGAI--DVSAD 221

Query: 63  LELWL 67
            + ++
Sbjct: 222 KKAFI 226


>gi|29347004|ref|NP_810507.1| putative ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338902|gb|AAO76701.1| putative ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
          Length = 319

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   CP     +G+  L  + ++CI C  C   C   A K DT 
Sbjct: 252 CTHCG--ICAARCPAGAITKGDE-LNTNAEKCIKCCACVKACANKARKYDTP 300



 Score = 34.4 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG+C   CP  AI    E
Sbjct: 248 DESLCTHCGICAARCPAGAITKGDE 272


>gi|110642843|ref|YP_670573.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           536]
 gi|191171357|ref|ZP_03032906.1| formate hydrogenlyase, subunit F [Escherichia coli F11]
 gi|300941096|ref|ZP_07155608.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|300975044|ref|ZP_07172845.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1]
 gi|312965022|ref|ZP_07779262.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75]
 gi|331648438|ref|ZP_08349526.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M605]
 gi|110344435|gb|ABG70672.1| formate hydrogenase-3 component F [Escherichia coli 536]
 gi|190908291|gb|EDV67881.1| formate hydrogenlyase, subunit F [Escherichia coli F11]
 gi|281179723|dbj|BAI56053.1| formate hydrogenlyase subunit [Escherichia coli SE15]
 gi|300308812|gb|EFJ63332.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1]
 gi|300454139|gb|EFK17632.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|312290578|gb|EFR18458.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75]
 gi|324005682|gb|EGB74901.1| hydrogenase 4 subunit H [Escherichia coli MS 57-2]
 gi|324013675|gb|EGB82894.1| hydrogenase 4 subunit H [Escherichia coli MS 60-1]
 gi|331042185|gb|EGI14327.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M605]
          Length = 180

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWQFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|330506430|ref|YP_004382858.1| 4Fe-4S binding domain-containing protein [Methanosaeta concilii
          GP-6]
 gi|328927238|gb|AEB67040.1| 4Fe-4S binding domain protein [Methanosaeta concilii GP-6]
          Length = 145

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C+   C  VC     ++  +  A   D+C  CG+C+  CP   ++ D
Sbjct: 45 CHHCEDACCTMVCSTGALHKEGDKTAFDVDKCTGCGLCQLACPFGVVRTD 94


>gi|320198902|gb|EFW73500.1| Formate dehydrogenase O beta subunit [Escherichia coli EC4100B]
          Length = 300

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 146


>gi|332652797|ref|ZP_08418542.1| putative ferredoxin [Ruminococcaceae bacterium D16]
 gi|332517943|gb|EGJ47546.1| putative ferredoxin [Ruminococcaceae bacterium D16]
          Length = 263

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKP 57
            + V++ C  C    C   CP+            HP    EC  C  C   CPV AI+ 
Sbjct: 182 PFSVSDACTSCG--KCERSCPLGSISMVNG----HPAWGKECTHCMACINGCPVQAIEY 234


>gi|301328213|ref|ZP_07221341.1| formate dehydrogenase, beta subunit [Escherichia coli MS 78-1]
 gi|300845350|gb|EFK73110.1| formate dehydrogenase, beta subunit [Escherichia coli MS 78-1]
          Length = 286

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 84  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 132


>gi|253995914|ref|YP_003047978.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
 gi|253982593|gb|ACT47451.1| cytochrome c oxidase accessory protein CcoG [Methylotenera mobilis
           JLW8]
          Length = 477

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 14/73 (19%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI--KPDTEPGLE 64
           +CI C    CV+VCP       G         ECI CG+C   C  ++I  K +   GL 
Sbjct: 271 DCIDCSF--CVQVCPTGIDIRNGLQQ------ECISCGLCVDAC--NSIMDKMEYPRGLI 320

Query: 65  LWLKINSEYATQW 77
            +   N+     W
Sbjct: 321 RFSTQNA-LTNHW 332


>gi|238757336|ref|ZP_04618522.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia aldovae ATCC
           35236]
 gi|238704375|gb|EEP96906.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia aldovae ATCC
           35236]
          Length = 323

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKEAMKE 196


>gi|291327291|ref|ZP_06127698.2| formate dehydrogenase, beta subunit [Providencia rettgeri DSM 1131]
 gi|291310898|gb|EFE51351.1| formate dehydrogenase, beta subunit [Providencia rettgeri DSM 1131]
          Length = 312

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTE 60
           + C+ C    C++ CP      + +N +     + CI CG C   CP D   I P+  
Sbjct: 96  DGCMHCADPGCLKACPSEGAIVQYKNGIVDFQSEHCIGCGYCIAGCPFDVPRINPEDN 153



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-----ECIDCG---------VCEPECP 51
           +E+CI C +  C+  CP D          I+P+     +C  C           C   CP
Sbjct: 128 SEHCIGCGY--CIAGCPFDVPR-------INPEDNRAYKCTLCVDRVEVGQEPACVKTCP 178

Query: 52  VDAIKPDTEPGL 63
             AI   ++  +
Sbjct: 179 TGAIHFGSKEDM 190


>gi|171910298|ref|ZP_02925768.1| cytochrome c oxidase accessory protein FixG [Verrucomicrobium
           spinosum DSM 4136]
          Length = 476

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP          L     ECI C  C   C
Sbjct: 258 DCINC--RRCVQVCPTGIDIRNGLQL-----ECIGCAACVDAC 293


>gi|146311706|ref|YP_001176780.1| formate dehydrogenase beta subunit [Enterobacter sp. 638]
 gi|145318582|gb|ABP60729.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Enterobacter sp. 638]
          Length = 294

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C+   C++ CP      +  N +     D CI CG C   CP +  + + +  
Sbjct: 98  DGCMHCEDPGCLKACPSAGAIIQYANGIVDFQQDNCIGCGYCIAGCPFNVPRLNKDDN 155


>gi|74318301|ref|YP_316041.1| adenylylsulfate reductase subunit beta [Thiobacillus
          denitrificans ATCC 25259]
 gi|74057796|gb|AAZ98236.1| adenylylsulfate reductase, beta subunit [Thiobacillus
          denitrificans ATCC 25259]
          Length = 160

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 2  TYVVTENCILCKHTDCVEVCPVDCFYE---GENFLAIHPDECIDCGVCEPECPVDAI 55
          T+V    C  C +  CV++CP D  +          I P+ C +C  C   CP+DAI
Sbjct: 3  TFVYMTRCDGCGY--CVDICPSDIMHIDKVTRRAYNIEPNMCWECYSCVKACPMDAI 57


>gi|323700091|ref|ZP_08112003.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323460023|gb|EGB15888.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 323

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           + C+ C    C   CP     E ++   + P ECI CG C   CPV
Sbjct: 224 DACVHCG--KCSASCPSGIAVEKKDR-VLTP-ECIGCGQCIGACPV 265



 Score = 37.1 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 5/42 (11%)

Query: 17  CVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVD 53
           C  +CP           G   +    D C+ CG C   CP  
Sbjct: 198 CRYLCPYGALLGLLAWFGPVRVTRDKDACVHCGKCSASCPSG 239


>gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 633

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           + C  C  T C   CP +    E +    +  ++CI CG+C   C   A+
Sbjct: 583 DACTGC--TLCARKCPQEAITGEKKEPHVLDQEKCIKCGICYDVCKFGAV 630



 Score = 37.1 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 32  FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
              I  D C  C +C  +CP +AI  + +   
Sbjct: 577 HYEISEDACTGCTLCARKCPQEAITGEKKEPH 608


>gi|294776068|ref|ZP_06741564.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|294450206|gb|EFG18710.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
          Length = 508

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFYEGEN---------FLAIHPDECIDCGVCEPEC- 50
           V +NCI         +C   CP                     ++ + CI CG CE  C 
Sbjct: 431 VAQNCIVNTDGVSCGNCARHCPTGAILMVPKDADDEKSLKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 491 SRPFSAIYVE 500



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 16/71 (22%)

Query: 15  TDCVEVCPVDCFYEGE---------NFLAIHPDECI------DCGVCEPECPVDAIKP-D 58
             C EVCP D  +  +                  CI       CG C   CP  AI    
Sbjct: 401 AKCAEVCPTDAIHLADLTEKSSVQIGHAVWVAQNCIVNTDGVSCGNCARHCPTGAILMVP 460

Query: 59  TEPGLELWLKI 69
            +   E  LKI
Sbjct: 461 KDADDEKSLKI 471



 Score = 37.1 bits (85), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIK 56
            ++C  C    CV VCP        +   +   E       C  +C  C   CP DAI 
Sbjct: 357 AQHCTAC--QLCVSVCPNQVLRPSGDLKHLMQPEMSYERGYCRPECAKCAEVCPTDAIH 413



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           T  C  C    C   C   C         I    C+ C  C  +C   AIK 
Sbjct: 221 TSKCNGCGL--CARNCKSSCIN--PKAHEIDYSRCVACMDCLGKCRQGAIKY 268


>gi|269139047|ref|YP_003295748.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984708|gb|ACY84537.1| electron transport complex protein [Edwardsiella tarda EIB202]
          Length = 767

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 7   ENCILCKHTDCVEVCP----------VDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + CI C    C +VCP               E +     H  ECI+CG C   CP +
Sbjct: 376 QPCIRCG--ACADVCPARLLPQQLYWYSQGKEHDKARDYHLQECIECGACAYVCPSN 430


>gi|225568913|ref|ZP_03777938.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM
          15053]
 gi|225162412|gb|EEG75031.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM
          15053]
          Length = 571

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 8  NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          +C  C    CV  C V           I  D CI+CG C   CP +A
Sbjct: 10 SCRHC--YKCVRNCEVKAISVQNEQAHIMKDHCINCGHCLEVCPQNA 54


>gi|221195371|ref|ZP_03568426.1| putative ferredoxin [Atopobium rimae ATCC 49626]
 gi|221184558|gb|EEE16950.1| putative ferredoxin [Atopobium rimae ATCC 49626]
          Length = 426

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 9   CILCKHTD------CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           C+ C          C EVCPVD   +  N      + CI CG+C+  CP +
Sbjct: 58  CLQCASGSAEVCRRCQEVCPVDAI-DIHNQTVSIAEHCIQCGLCDSVCPTE 107


>gi|253988224|ref|YP_003039580.1| formate dehydrogenase-o, iron-sulfur subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638784|emb|CAR67401.1| formate dehydrogenase-o, iron-sulfur subunit (formate
           dehydrogenase-beta subunit) (fdh-z beta subunit)
           (aerobic formate dehydrogenas iron-sulfur subunit)
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779674|emb|CAQ82835.1| putative formate dehydrogenase-o, iron-sulfur subunit [Photorhabdus
           asymbiotica]
          Length = 306

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E  
Sbjct: 96  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRINKEDN 153



 Score = 39.0 bits (90), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP +     + +N       +C  C           C   CP  A
Sbjct: 128 SEHCIGCGY--CIAGCPFNVPRINKEDNRAY----KCTLCVDRVGVGQEPACVKTCPTGA 181

Query: 55  IKPDTEPGLE 64
           I   T+  ++
Sbjct: 182 IHFGTKEDMK 191


>gi|163855995|ref|YP_001630293.1| NADH dehydrogenase subunit I [Bordetella petrii DSM 12804]
 gi|163259723|emb|CAP42024.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella petrii]
          Length = 162

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRDD 87


>gi|222480730|ref|YP_002566967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453632|gb|ACM57897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 109

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--------EGENFLA-IHPDECIDCGVCEPECPV 52
           T+V  +  I      C+E CPVD F         E E   + +  D+CIDC +C   CPV
Sbjct: 37  THVAVDFDICLADGACLEDCPVDVFEWVDTPGHPESERKASPVDEDQCIDCMLCVDVCPV 96

Query: 53  DAIKPDTEPGLELWL 67
           DAI  D +PG E  +
Sbjct: 97  DAI--DVDPGRENRI 109


>gi|148926428|ref|ZP_01810111.1| ferredoxin [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844591|gb|EDK21697.1| ferredoxin [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 94

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV          EGE+   ++ ++C++C        C  
Sbjct: 1  MAVKITDICIACG--SCIDECPVSAIVDDANNPEGEDRYYVYANKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLELWLKIN 70
                D CI CG C  ECPV AI  D    E     ++  N
Sbjct: 1  MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYAN 42


>gi|110678599|ref|YP_681606.1| RdxB protein [Roseobacter denitrificans OCh 114]
 gi|109454715|gb|ABG30920.1| RdxB protein [Roseobacter denitrificans OCh 114]
          Length = 478

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCPV     +G+        ECI C +C   C
Sbjct: 260 DCIDC--MACVNVCPVGIDIRDGQQM------ECITCALCIDAC 295



 Score = 34.4 bits (78), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 3/25 (12%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLE 64
           CIDC  C   CPV     D   G +
Sbjct: 261 CIDCMACVNVCPVG---IDIRDGQQ 282


>gi|86160173|ref|YP_466958.1| formate dehydrogenase beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776684|gb|ABC83521.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 291

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           +V + C+ C    C++ CP      +  N +     D+CI CG C+  CP +
Sbjct: 94  IVKDGCLHCAEPGCLKACPAPGAIVQYANGIVDFQQDQCIGCGYCQTGCPFN 145


>gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 562

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 17/76 (22%)

Query: 9   CILCKHTDCVEVC----PVDCF---YEGENFLA-------IHPDECIDCGVCEPECPVDA 54
           CILC    CV VC     V        G            I    C+ CG C   CP  A
Sbjct: 147 CILCGD--CVRVCEEVQNVGAIDFVGRGSKMTVTTAFDEPIGHSNCVSCGQCAAVCPTGA 204

Query: 55  IKPDTEPGLELWLKIN 70
           I   +    +LW  +N
Sbjct: 205 IVVRSNTE-KLWQDLN 219


>gi|148264001|ref|YP_001230707.1| hydrogenase 2 protein HybA [Geobacter uraniireducens Rf4]
 gi|146397501|gb|ABQ26134.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 311

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPEC 50
           +C+ C+   CV VCPV    + +    +    + CI C  C+  C
Sbjct: 112 SCMHCQKPSCVSVCPVSAMTKDKVSGVVDYNKNTCIGCRYCQVAC 156


>gi|294083652|ref|YP_003550409.1| formate dehydrogenase subunit alpha [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663224|gb|ADE38325.1| formate dehydrogenase alpha subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 924

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 16/80 (20%)

Query: 4   VVTENCILCKHTDCVEVCP---VD-----CFYEGENFLAIH------PDECIDCGVCEPE 49
           V  + CI C    CV  C    V+          +  +            C+ CG C   
Sbjct: 146 VNMDACIQCGL--CVRACREVQVNDVIGLAGRGADAHIVFDFGDDMGASTCVGCGECVQA 203

Query: 50  CPVDAIKPDTEPGLELWLKI 69
           CP  A+ P T       L I
Sbjct: 204 CPTGALMPKTLLDDSQKLAI 223


>gi|288559810|ref|YP_003423296.1| pyruvate ferredoxin oxidoreductase-associated PorF
          [Methanobrevibacter ruminantium M1]
 gi|288542520|gb|ADC46404.1| pyruvate ferredoxin oxidoreductase-associated PorF
          [Methanobrevibacter ruminantium M1]
          Length = 142

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 9  CILC--KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+ C  +   C+ VCP          + I  D+CI CG+C   CP+ A+
Sbjct: 36 CMHCSPEKAPCLAVCPKGAIVALGGAITIKQDKCIGCGLCHSVCPIGAV 84



 Score = 37.4 bits (86), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 31 NFLAIHPDECIDCGVCEPECPVDAIK 56
          + L ++P+ C+DCG+CE  CP +AI+
Sbjct: 2  DELKVNPELCVDCGLCERNCPNNAIR 27


>gi|268323352|emb|CBH36940.1| hypothetical protein, Coenzyme F420 hydrogenase/dehydrogenase, beta
           subunit family [uncultured archaeon]
          Length = 467

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 7   ENCILCKHTDCVEVC-------PVDCFYEGENFLAIHP-----DECIDCGVCEPECPVDA 54
           E CILC    C  VC        ++    G       P     D+CI CG C   CP +A
Sbjct: 120 ERCILCGL--CTRVCDELVGVSAINVISRGVEREVGTPYRELSDDCIGCGSCALVCPTEA 177

Query: 55  IKPD 58
           IK +
Sbjct: 178 IKRE 181


>gi|261403798|ref|YP_003248022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261370791|gb|ACX73540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 64

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          + +NC+ C    CV  CP            I+ ++C++CG+C   CP+DAIK DT    +
Sbjct: 6  ILKNCVGCG--TCVVFCPKKAIK-TYGVAIINKEKCVNCGICVKYCPIDAIKVDTTLTND 62

Query: 65 LW 66
           +
Sbjct: 63 QY 64


>gi|167756755|ref|ZP_02428882.1| hypothetical protein CLORAM_02302 [Clostridium ramosum DSM 1402]
 gi|167702930|gb|EDS17509.1| hypothetical protein CLORAM_02302 [Clostridium ramosum DSM 1402]
          Length = 442

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 12/55 (21%)

Query: 8   NCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPV 52
            CI C    CV+VCP+              + ENFL +H ++C++CG C   CP 
Sbjct: 366 ACIHCG--RCVDVCPIGLIPQLLYRYARTGDKENFLKVHGNDCMECGCCTFTCPA 418



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 37  PDECIDCGVCEPECPVDAI 55
           P  CI CG C   CP+  I
Sbjct: 364 PTACIHCGRCVDVCPIGLI 382


>gi|153006436|ref|YP_001380761.1| nitrate reductase subunit beta [Anaeromyxobacter sp. Fw109-5]
 gi|152030009|gb|ABS27777.1| nitrate reductase, beta subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 485

 Score = 47.1 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPV 52
           C  C +  C   CP    Y  GE+ +  I  + C    +C P CP 
Sbjct: 186 CNHCLNPACAAACPSGAIYKRGEDGVVLIDREACRGWRMCVPACPY 231


>gi|330501739|ref|YP_004378608.1| nitrate-inducible formate dehydrogenase subunit beta [Pseudomonas
           mendocina NK-01]
 gi|328916025|gb|AEB56856.1| nitrate-inducible formate dehydrogenase, beta subunit [Pseudomonas
           mendocina NK-01]
          Length = 308

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C+  CP      +  N +   + D+CI CG C   CP +
Sbjct: 94  DGCMHCAEPGCLAACPSPGAIIQYANGIVDFNQDKCIGCGYCITGCPFN 142


>gi|297521336|ref|ZP_06939722.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           OP50]
          Length = 104

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 35.9 bits (82), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|293391830|ref|ZP_06636164.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952364|gb|EFE02483.1| cytochrome c nitrite reductase, Fe-S protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 207

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
           ++C  C +  CV VCP    F + +  +  +H + C+ C  C   CP 
Sbjct: 74  QSCQHCTNAPCVAVCPTGASFIDKDTGIVDVHKELCVGCQYCIAVCPY 121


>gi|297569355|ref|YP_003690699.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925270|gb|ADH86080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 275

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C+ C    C++ CP +   + EN       + CI CG C   CP D  K D 
Sbjct: 75  CMHCGDAGCLKACPNEALVQEENGTIRRIEENCIGCGHCVQFCPFDIPKVDE 126


>gi|291613327|ref|YP_003523484.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583439|gb|ADE11097.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 178

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK-PDTEPGLE 64
           E CI C  T C +VCP D        +  +  + C  CG CE  CP +++K       L+
Sbjct: 108 EICIGC--TRCFKVCPTDAIMGAAQQIHVVFREACTACGKCEEVCPTESVKLQPIPVTLQ 165

Query: 65  LW 66
            W
Sbjct: 166 SW 167


>gi|242279115|ref|YP_002991244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242122009|gb|ACS79705.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 323

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           + CI C    C + CP     E +    I+  EC+ C  C   CPVD
Sbjct: 225 DKCISCG--KCNKACPGG--IEVDRKQTINSPECVGCTQCINACPVD 267


>gi|220935790|ref|YP_002514689.1| electron transport complex, RnfABCDGE type, B subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997100|gb|ACL73702.1| electron transport complex, RnfABCDGE type, B subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 186

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C  T C++ CPVD        +  +   EC  C +C   CPVD I
Sbjct: 112 CIGC--TLCIQACPVDAILGAAKQMHTVIESECTGCELCIEPCPVDCI 157



 Score = 37.1 bits (85), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 22  PVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           PV+   +  +   I    CI C +C   CPVDAI
Sbjct: 94  PVEGETKPPSVAIIDEQVCIGCTLCIQACPVDAI 127


>gi|159038276|ref|YP_001537529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Salinispora arenicola CNS-205]
 gi|157917111|gb|ABV98538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Salinispora
          arenicola CNS-205]
          Length = 85

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 4  VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          V+ E C  C    C+  CP          L +  D C  C  C   CPV AI+      L
Sbjct: 10 VLVEACQGCG--ACLLTCPTHAIRPVPGGLVVRADRCTGCLECLEICPVGAIRAAGPRHL 67

Query: 64 EL 65
          E 
Sbjct: 68 EE 69


>gi|56752941|gb|AAW24682.1| SJCHGC09319 protein [Schistosoma japonicum]
          Length = 137

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7  ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
          E CI CK   C  +CP                      I   +CI CG C+  CPVDAI
Sbjct: 36 ERCIACKL--CEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 92



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  + EP  +
Sbjct: 36 ERCIACKLCEAICPAQAITIEAEPRAD 62



 Score = 35.5 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA 34
           CI C    C E CPVD   EG NF  
Sbjct: 77  CIYCGF--CQEACPVDAIVEGPNFEY 100


>gi|530911|gb|AAA68432.1| iron-sulfur protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 198

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 8   NCILCKHTDCVEVC-PVDCFYEGENFLAIHPDECIDCGVCEPECPV 52
           +C  C++  CV VC P          L +    CI C  C   CP 
Sbjct: 69  SCQHCENAPCVSVCLPERHIVMKTGSLQVDKSRCIGCDYCVAACPF 114


>gi|83592252|ref|YP_426004.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum
           ATCC 11170]
 gi|83575166|gb|ABC21717.1| pyruvate-formate lyase-activating enzyme [Rhodospirillum rubrum
           ATCC 11170]
          Length = 306

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +C+ C    C+EVC         N   I  D+C+ CG C   C   A
Sbjct: 60  SCVGCG--KCIEVCKAGALSF-SNPEFIDRDKCVRCGACANVCLPGA 103


>gi|73538477|ref|YP_298844.1| formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134]
 gi|72121814|gb|AAZ64000.1| Formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134]
          Length = 937

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 4   VVTENCILCKHTDCVEVCPVD--------CFYEGENFLAIHPD------ECIDCGVCEPE 49
           V  + CI C  T CV  C  +                +    D       C+ CG C   
Sbjct: 153 VNLDACIQC--TRCVRACRDEQVNDVIGLALRGDAARIVFDMDDPLGASTCVACGECVQA 210

Query: 50  CPVDAIKPDTEPGL 63
           CP  A+ P  +  L
Sbjct: 211 CPTGALMPARDAAL 224


>gi|21227443|ref|NP_633365.1| pyruvate synthase subunit delta [Methanosarcina mazei Go1]
 gi|20905812|gb|AAM31037.1| pyruvate synthase delta subunit [Methanosarcina mazei Go1]
          Length = 110

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + E C  C    C  VCP       E+ F     D C  CGVC  ECP DAI+   E 
Sbjct: 54  IYEKCTKCG--ICEMVCPDMSVKPREDGFFEYDYDYCKGCGVCANECPADAIEMVLEE 109


>gi|329955932|ref|ZP_08296735.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328525312|gb|EGF52362.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 508

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCFY---------EGENFLAIHPDECIDCGVCEPEC- 50
           + ENCI      +  +C   CPV             E +    ++ + CI CG CE  C 
Sbjct: 431 IKENCICITDDVECGNCARHCPVSAIQMVASDPGNPESKKIPVVNTERCIGCGACENLCP 490

Query: 51  --PVDAIKPD 58
             P  AI  +
Sbjct: 491 SRPFSAIYVE 500



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIKP 57
            ++C  C    CV VCP        +   +   E       C  +C  C   CP  AI+P
Sbjct: 357 AQHCTAC--QLCVAVCPNQVLRPSSDLTKLMQPEMSYERGYCRPECTKCSEVCPAGAIRP 414

Query: 58  DTEPG 62
            T+  
Sbjct: 415 ITKAD 419


>gi|309390313|gb|ADO78193.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium
           praevalens DSM 2228]
          Length = 1178

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 29/95 (30%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------------------------EG-ENFLAIHPDE 39
           + CI C    C   CP                               EG E  + + P +
Sbjct: 690 DTCIQCNQ--CSLACPHAVIRPFLLNEEEAANAPEGFETLDARGKQLEGLEYKIQVSPYD 747

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYA 74
           C  CGVC   CPVDA++  +   +      N EYA
Sbjct: 748 CTGCGVCAEVCPVDALEMTSFAEMAEKEADNWEYA 782


>gi|188587898|ref|YP_001920057.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498179|gb|ACD51315.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 345

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           + C+ C    CV+ C        Y  +   A   D+CI CG C   CP  A
Sbjct: 177 DRCVGCG--ACVKECKQHVTSALYGKDGKAAKQIDKCIGCGACVKVCPTMA 225


>gi|183983396|ref|YP_001851687.1| NADH-dependent glutamate synthase (small subunit) GltD
           [Mycobacterium marinum M]
 gi|183176722|gb|ACC41832.1| NADH-dependent glutamate synthase (small subunit) GltD
           [Mycobacterium marinum M]
          Length = 561

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           NC  C    C+  CP D     G         D C  C  C  +CPV AI+   EP
Sbjct: 507 NCFECDG--CLGACPEDAVIKLGRGHRYRFDYDRCTGCATCYDQCPVHAIEMIAEP 560


>gi|167759678|ref|ZP_02431805.1| hypothetical protein CLOSCI_02037 [Clostridium scindens ATCC 35704]
 gi|167662709|gb|EDS06839.1| hypothetical protein CLOSCI_02037 [Clostridium scindens ATCC 35704]
          Length = 139

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIKPDTEPG 62
           V + C  C    C+E CP    Y+ E +  I    D+C  C  C+  CP DAI+ D +  
Sbjct: 51  VCDGCTHCG--KCLEACPFGAIYKDEQYGLILTDKDKCRKCRKCQAVCPNDAIRFDADGK 108

Query: 63  LEL 65
           +E 
Sbjct: 109 MEK 111


>gi|297585367|ref|YP_003701147.1| dimethylsulfoxide reductase subunit B [Bacillus selenitireducens
           MLS10]
 gi|297143824|gb|ADI00582.1| dimethylsulfoxide reductase, chain B [Bacillus selenitireducens
           MLS10]
          Length = 183

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
           + ++ +C  C    C E CP    +   E+ L +H D +C+ C +C   CP +  + + E
Sbjct: 52  FFLSVSCNHCDEPKCAENCPTGAIFKRTEDGLVVHDDDKCVGCKMCLWSCPYEGPQYNEE 111

Query: 61  PG 62
            G
Sbjct: 112 TG 113


>gi|187477549|ref|YP_785573.1| NADH dehydrogenase subunit I [Bordetella avium 197N]
 gi|115502517|sp|Q2KUZ8|NUOI_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115422135|emb|CAJ48659.1| NADH dehydrogenase I chain I [Bordetella avium 197N]
          Length = 162

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESDQREDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.5 bits (81), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRED 87


>gi|257075574|ref|ZP_05569935.1| ferredoxin [Ferroplasma acidarmanus fer1]
          Length = 69

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C  C    CV +CP D     E  +AI+ D+CI C  C   CP  AI  +
Sbjct: 16 CDYCG--ACVGMCPTDAINLDETVIAINEDKCIKCEFCVIGCPTGAISAE 63


>gi|219667334|ref|YP_002457769.1| dimethylsulfoxide reductase subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|219537594|gb|ACL19333.1| dimethylsulfoxide reductase, chain B [Desulfitobacterium hafniense
           DCB-2]
          Length = 191

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKP 57
            Y  + +C  C    CVE CP    +  E+    H   +CI C  C   CP    + 
Sbjct: 51  AYHYSGSCNHCAQPKCVEGCPTGAMHVAEDGTVQHDRGKCIGCRYCTWACPYGVPQF 107


>gi|328954890|ref|YP_004372223.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coriobacterium glomerans PW2]
 gi|328455214|gb|AEB06408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coriobacterium glomerans PW2]
          Length = 425

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 2   TYVVTENCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            Y  +  C++CK        C++ CP       ++ + I  D C  CGVC   CP +
Sbjct: 55  PYANSLPCLVCKSEKSGCRACMDACPTGAIEIEDSSVEIL-DTCRKCGVCVGACPTE 110



 Score = 37.1 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 8   NCILCKHTDCVEVCPV-DCFYEGENF-LAIHPDECIDCGVCEPEC 50
           +C +C   +C++VCP   C   G N   A+ P  C+ CG+C   C
Sbjct: 324 SCTMCG--ECMKVCPTFACDLVGANGRFAVEPTYCLGCGLCAEVC 366


>gi|307719342|ref|YP_003874874.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM
           6192]
 gi|306533067|gb|ADN02601.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM
           6192]
          Length = 1195

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 31/93 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------------------EGENF------LAIHPDE 39
           + CI C    C  VCP                          +G++F      + I P++
Sbjct: 696 DVCIQCGD--CSAVCPHAVIRLKVYEEKHLEGAPAGFKFTDAKGKDFAGLKFTIQISPED 753

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           C  CG C   CP  A K D +        IN E
Sbjct: 754 CTGCGACVNICP--AYKKDEQGNKTDRKAINME 784



 Score = 39.4 bits (91), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 36  HPDECIDCGVCEPECPVDAIK 56
            PD CI CG C   CP   I+
Sbjct: 694 DPDVCIQCGDCSAVCPHAVIR 714


>gi|260945002|ref|XP_002616799.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC
          42720]
 gi|238850448|gb|EEQ39912.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC
          42720]
          Length = 618

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V T+ C    CK  +C + CPV      C           I    C+ CG+C  +CP DA
Sbjct: 21 VSTDKCKPKKCK-QECRKSCPVVKTGKLCIEVTPASKIAFISETLCVGCGICVKKCPFDA 79

Query: 55 I 55
          I
Sbjct: 80 I 80


>gi|197285738|ref|YP_002151610.1| ferredoxin [Proteus mirabilis HI4320]
 gi|227356252|ref|ZP_03840641.1| ferredoxin [Proteus mirabilis ATCC 29906]
 gi|194683225|emb|CAR43906.1| putative ferredoxin [Proteus mirabilis HI4320]
 gi|227163716|gb|EEI48632.1| ferredoxin [Proteus mirabilis ATCC 29906]
          Length = 86

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVD 53
          M  ++T+ CI C    C   CP D    G +   I+PD C +C        C+  CP+ 
Sbjct: 1  MALLITKKCINCD--MCEPECPNDAISMGNDIYEINPDLCTECVGHYDKPTCQSVCPIT 57


>gi|288940983|ref|YP_003443223.1| DsrB protein [Allochromatium vinosum DSM 180]
 gi|2576394|gb|AAC35395.1| dissimilatory siroheme sulfite reductase beta subunit
           [Allochromatium vinosum DSM 180]
 gi|288896355|gb|ADC62191.1| DsrB [Allochromatium vinosum DSM 180]
          Length = 356

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C P CP   I       L +W+
Sbjct: 202 CERPSVVARCPVAAIRPAMVNGKPSLEVDERKCICCGACYPPCPPMQINDAEHSKLAIWV 261

Query: 68  KINSEYATQWPN 79
             N   A   P 
Sbjct: 262 GGNHSNARGKPT 273


>gi|254242172|ref|ZP_04935494.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
 gi|126195550|gb|EAZ59613.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
          Length = 774

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------FYEGENFLAIHPD---ECIDCGVCEPECP 51
           V    CI C    C +VCPV         F  G+    +      +CI+CG C   CP
Sbjct: 364 VPAMPCIRCGD--CAQVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|327403178|ref|YP_004344016.1| molybdopterin oxidoreductase, iron-sulfur-binding subunit
           [Fluviicola taffensis DSM 16823]
 gi|327318686|gb|AEA43178.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Fluviicola taffensis DSM 16823]
          Length = 1102

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 9   CILCKHTDCVEVCPVDCF---YEGENFLAIHPDECIDCGVCEPECPVDAIKPDT--EPGL 63
           C  C H  C  VCPV       EG N +  +   CI    C   CP    + +    P  
Sbjct: 900 CQQCNHAPCETVCPVAATTHSNEGLNQMTYN--RCIGTRYCANNCPYKVRRFNWFNYPSY 957

Query: 64  ELWLKIN 70
           + + +IN
Sbjct: 958 KKFTEIN 964


>gi|312879273|ref|ZP_07739073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310782564|gb|EFQ22962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 158

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           +   C  C+   C++VC     Y   + +  +  ++CI C +C   CP   I    E
Sbjct: 48  IPMTCFQCEDAACLKVCKTGALYRDADGVVQVDREKCIGCRMCVMACPFGNILYHRE 104


>gi|311104666|ref|YP_003977519.1| NADH-quinone oxidoreductase subunit 9 [Achromobacter xylosoxidans
           A8]
 gi|310759355|gb|ADP14804.1| NADH-quinone oxidoreductase subunit 9 [Achromobacter xylosoxidans
           A8]
          Length = 162

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESDQRDDGTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  +++   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRDD 87


>gi|307244904|ref|ZP_07527002.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307247081|ref|ZP_07529134.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|307249303|ref|ZP_07531298.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|307251625|ref|ZP_07533531.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307253860|ref|ZP_07535713.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307256124|ref|ZP_07537911.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307258314|ref|ZP_07540056.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|307260556|ref|ZP_07542249.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|307262686|ref|ZP_07544315.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|306854226|gb|EFM86433.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306856450|gb|EFM88600.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|306858702|gb|EFM90763.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306860936|gb|EFM92943.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306863220|gb|EFM95161.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865305|gb|EFM97201.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306867653|gb|EFM99499.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306869785|gb|EFN01569.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|306872014|gb|EFN03729.1| Protein nrfC [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 183

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPVDA--IKPDTEPG 62
           ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP     I P+ +  
Sbjct: 51  QSCQHCTNAPCVAVCPTGASFVDPETGIVDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSA 110

Query: 63  LE 64
            +
Sbjct: 111 DK 112


>gi|301057791|ref|ZP_07198860.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300448102|gb|EFK11798.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 574

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 24/71 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------------------EGENFLAIHPDECIDCG 44
           E CI C++  C++V P DC                        E  N + I    CI CG
Sbjct: 494 ERCIYCRY--CIDVAPRDCIKLVNGVETNDDGAIIGFVETSEWEKVNAVIIDNKRCIRCG 551

Query: 45  VCEPECPVDAI 55
            C   CP+D I
Sbjct: 552 ECVRVCPMDCI 562


>gi|300896418|ref|ZP_07114950.1| formate dehydrogenase, beta subunit [Escherichia coli MS 198-1]
 gi|300359691|gb|EFJ75561.1| formate dehydrogenase, beta subunit [Escherichia coli MS 198-1]
          Length = 287

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 85  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 133


>gi|291280473|ref|YP_003497308.1| pyruvate formate-lyase activating enzyme [Deferribacter
          desulfuricans SSM1]
 gi|290755175|dbj|BAI81552.1| pyruvate formate-lyase activating enzyme [Deferribacter
          desulfuricans SSM1]
          Length = 298

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          M++  +  CI C    C  VCP        + L +H D C  CG C  ECP DA++
Sbjct: 47 MSFFQS-RCIRC--VTCETVCPEKAIKIA-DTLEVH-DNCTLCGTCVDECPADALE 97


>gi|289804003|ref|ZP_06534632.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 154

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +      +          +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|218131017|ref|ZP_03459821.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697]
 gi|317477088|ref|ZP_07936330.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986721|gb|EEC53054.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697]
 gi|316906881|gb|EFV28593.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 373

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGL 63
           T NCI C    CV+ C  D  +   E    I   +C+ CG C   C  D A+  D +   
Sbjct: 193 TGNCIGCN--ICVKHCAHDAIHLNAERKAEIDYAKCVGCGQCVALCQHDAAVVSDWDTSE 250

Query: 64  ELWLKINSEYAT 75
            L  KI +EY+ 
Sbjct: 251 RLNYKI-AEYSA 261


>gi|182626227|ref|ZP_02953985.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens D str. JGS1721]
 gi|177908491|gb|EDT71024.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 273

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP +      N   I  ++C  CG+C  +CP  AI
Sbjct: 219 CIGCKL--CEKNCPSEAIRVENNLAIIDYEKCTSCGICVSKCPKKAI 263



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-YEGENFLAI------HPDE---------CIDCGVCE 47
           V +  C+ CK   C+  CP +      ++   I         +         CI C +CE
Sbjct: 169 VDSSKCVACK--ACISACPQNLIDIIKDDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCE 226

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP +AI+ +    +  + K
Sbjct: 227 KNCPSEAIRVENNLAIIDYEK 247



 Score = 34.7 bits (79), Expect = 4.4,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             C + C        +    +   +C+ C  C   CP + I
Sbjct: 149 GSCKDACKFGAISIIDGIAKVDSSKCVACKACISACPQNLI 189


>gi|156937202|ref|YP_001434998.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis
           KIN4/I]
 gi|156566186|gb|ABU81591.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis
           KIN4/I]
          Length = 717

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           + CI C    C  VCP +     G   +A    +CI C  C   CP DA+K +
Sbjct: 241 DICIGCG--TCAMVCPENVIKMKGYKPVAAREADCIGCYACVNYCPTDAVKVE 291


>gi|89896472|ref|YP_519959.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
 gi|89335920|dbj|BAE85515.1| putative oxidoreductase iron-sulfur subunit [Desulfitobacterium
           hafniense Y51]
          Length = 217

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y ++ +C  C + +C  +CP   +    +  +     +C  CG C   CP +A 
Sbjct: 68  YYLSSSCNHCLNPECFRLCPNHAYRKRRDGIVVFDEGKCKGCGTCIRSCPFEAP 121


>gi|331270189|ref|YP_004396681.1| anaerobic sulfite reductase subunit C [Clostridium botulinum
           BKT015925]
 gi|329126739|gb|AEB76684.1| anaerobic sulfite reductase subunit C [Clostridium botulinum
           BKT015925]
          Length = 304

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C     +E C +   Y+ E+ +AI  ++CI+CG C   C   A++   E G++++
Sbjct: 170 EKCKNCGKCAVIEKCRMKAVYKVEDRVAIDREKCINCGKCIENCYFSAMEV-KEEGMKIY 228

Query: 67  L 67
           L
Sbjct: 229 L 229


>gi|320539175|ref|ZP_08038846.1| putative truncated formate dehydrogenase-O, Fe-S subunit
          [Serratia symbiotica str. Tucson]
 gi|320030813|gb|EFW12821.1| putative truncated formate dehydrogenase-O, Fe-S subunit
          [Serratia symbiotica str. Tucson]
          Length = 240

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7  ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
          + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + E  
Sbjct: 40 DGCMHCADPGCLKACPSEGAIIQYVNGIVDFQSEHCIGCGYCIAGCPFDVPRMNKEDN 97



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG--ENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 72  SEHCIGCGY--CIAGCPFDVPRMNKEDNRVY----KCTLCVDRVDVGQEPACVKTCPTGA 125

Query: 55  IKPDTEPGLE 64
           I   T+  ++
Sbjct: 126 IHFGTKEAMK 135


>gi|304404555|ref|ZP_07386216.1| putative electron transfer protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304346362|gb|EFM12195.1| putative electron transfer protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 187

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDAIKPDTEP 61
            +   C+ C +  C   CP            +    ++CI C  C   CP    K D E 
Sbjct: 47  TIPLMCLHCVNPACARSCPAQAIQVTPEGAVLSALVEKCIGCQNCTIACPYGIPKFDQEQ 106

Query: 62  GL 63
            L
Sbjct: 107 NL 108


>gi|301154726|emb|CBW14189.1| formate-dependent nitrite reductase, 4Fe4S subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 225

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH--PDECIDCGVCEPECPVDA--IKPD 58
           ++C  C +  CV VCP    +       +    D C+ C  C   CP     I P+
Sbjct: 92  QSCQHCTNAPCVAVCPTGASFIDPETGIVDVTKDLCVGCQYCIAVCPYRVRFIHPE 147


>gi|296242189|ref|YP_003649676.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Thermosphaera aggregans DSM 11486]
 gi|296094773|gb|ADG90724.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Thermosphaera aggregans DSM 11486]
          Length = 165

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECP 51
          V   C+ C    CV  CP      GE+    +  ++C  CG C   CP
Sbjct: 48 VISTCVQCDDYPCVSSCPFQALSTGEHGQVLVDENKCTLCGTCVYACP 95


>gi|317153236|ref|YP_004121284.1| glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2]
 gi|316943487|gb|ADU62538.1| Glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2]
          Length = 508

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 7  ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + CI CK   CV  C      F E    +     +CI C  CE  CP  A
Sbjct: 20 DLCINCKV--CVRQCSYQAHYFDEARQKVMHDNTKCIGCHRCEALCPTAA 67



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDT 59
           PD CI+C VC  +C   A   D 
Sbjct: 18 DPDLCINCKVCVRQCSYQAHYFDE 41


>gi|269215453|ref|ZP_06159307.1| putative polyferredoxin [Slackia exigua ATCC 700122]
 gi|269130940|gb|EEZ62015.1| putative polyferredoxin [Slackia exigua ATCC 700122]
          Length = 349

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            CI  ++ DCV+VC             L   P  CI CG C   C + AI  +T
Sbjct: 281 ACI--ENHDCVKVCATGARSISPETGDLDFDPKYCIGCGACVNACAMGAISLET 332



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 17 CVEVCPVDCFYEGENFL--AIHPDECIDCGVCEPECPV 52
          C   CPVD     ++     +  + C  CG+C   C  
Sbjct: 21 CALACPVDAISFPDDASAPVVDEERCTKCGICMGVCDA 58


>gi|268323253|emb|CBH36841.1| putative pyruvate oxidoreductase, delta and gamma chain [uncultured
           archaeon]
          Length = 300

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVD 53
           ++C  C    CV  CP  C    E+       D C  C +C  ECP +
Sbjct: 245 DSCTRC--MICVSRCPDGCILVNEDGFPYTDYDNCKGCLICVEECPTN 290


>gi|255528550|ref|ZP_05395328.1| protein of unknown function DUF362 [Clostridium carboxidivorans P7]
 gi|296187878|ref|ZP_06856271.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255507759|gb|EET84221.1| protein of unknown function DUF362 [Clostridium carboxidivorans P7]
 gi|296047499|gb|EFG86940.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 387

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF------YEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V+ E CI C    C +VCP           EG+ +   +  +CI C  C+  CP  AI+
Sbjct: 316 VIKEKCIGC--ARCSQVCPEKPKVIKIIEKEGKKYPVWNMKQCIRCFCCQELCPCGAIE 372


>gi|237741389|ref|ZP_04571870.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           4_1_13]
 gi|229430921|gb|EEO41133.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           4_1_13]
          Length = 435

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 6   TENCILCKHTDCVEVCPVD----------CFYEGENFLAIHPDECIDCGVCEPECPVD 53
           T++CI C  + CV  CP+              E E     +  +CI+CG C   CP +
Sbjct: 361 TKSCISC--SKCVSACPMGLAPLMFDRLAAAKEYEEMAVHNLMDCIECGSCAYICPAN 416


>gi|154482955|ref|ZP_02025403.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC
           27560]
 gi|149736239|gb|EDM52125.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC
           27560]
          Length = 437

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECP 51
            +  T NC+ C    C +VCP            + ++  A   +H  ECI+CG C   CP
Sbjct: 357 AHAKTTNCLNCG--KCAQVCPEGLICAKLAHAADADDMEAFVKMHGMECIECGTCNYNCP 414

Query: 52  VD 53
            +
Sbjct: 415 AN 416


>gi|146311407|ref|YP_001176481.1| formate dehydrogenase beta subunit [Enterobacter sp. 638]
 gi|145318283|gb|ABP60430.1| formate dehydrogenase (quinone-dependent) iron-sulfur subunit
           [Enterobacter sp. 638]
          Length = 295

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP      +  N +     D CI CG C   CP +
Sbjct: 98  DGCMHCADPGCLKACPSAGAIIQYANGIVDFQSDHCIGCGYCIAGCPFN 146


>gi|326391290|ref|ZP_08212831.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992685|gb|EGD51136.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 291

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    C  +C  D          ++P  C  CG+C  +CPV+AIK   E
Sbjct: 66  DKCIECGL--CERLCRFDAISN----FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C  DAI
Sbjct: 57 GKETAVIDKDKCIECGLCERLCRFDAI 83


>gi|325954442|ref|YP_004238102.1| NAD(P)H-quinone oxidoreductase subunit I [Weeksella virosa DSM
           16922]
 gi|323437060|gb|ADX67524.1| NAD(P)H-quinone oxidoreductase subunit I [Weeksella virosa DSM
           16922]
          Length = 166

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA----------IHPDECIDCGVCEPE 49
           ENC  C    C   CP +           GE  L           I+   CI CG CE  
Sbjct: 72  ENCTACGL--CALACPAEAITMEAAERLPGEEHLYREEKYAAKYEINMLRCIFCGFCEEA 129

Query: 50  CPVDAIK 56
           CP DA+ 
Sbjct: 130 CPKDAVY 136



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 38 DECIDCGVCEPECPVDAIKPD 58
          + C  CG+C   CP +AI  +
Sbjct: 72 ENCTACGLCALACPAEAITME 92


>gi|306921794|dbj|BAJ17554.1| dissimilatory sulfite reductase beta subunit [Thiorhodococcus
           drewsii AZ1]
          Length = 273

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C P CP   I       L +W+
Sbjct: 202 CERPSVVARCPVAAIRPAMVNGKPSLEVDERKCICCGACFPPCPPMQINDAEHSKLAIWV 261

Query: 68  KINSEYATQWPN 79
             N   A   P 
Sbjct: 262 GGNHSNARGKPT 273


>gi|296387989|ref|ZP_06877464.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAb1]
          Length = 656

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------FYEGENFLAIHPD---ECIDCGVCEPECPVD 53
           V    CI C    C  VCPV         F  G+    +      +CI+CG C   CP  
Sbjct: 364 VPAMPCIRCGD--CARVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCPSG 421


>gi|295091670|emb|CBK77777.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 305

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           E C+ C    C   C        +N   I+ + C  CG C   CP  A
Sbjct: 59  EECLHCG--RCAAACRRKAISF-DNKTFINREFCTGCGECANACPAGA 103



 Score = 35.1 bits (80), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 37  PDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGV 96
            +EC+ CG C   C   AI  D +        IN E+ T          +   A  + G 
Sbjct: 58  KEECLHCGRCAAACRRKAISFDNK------TFINREFCTGCGECANACPA--GALVVKGK 109

Query: 97  KQKYEKYFSP 106
           K   ++    
Sbjct: 110 KMTVQQLIRE 119


>gi|237747483|ref|ZP_04577963.1| molybdopterin oxidoreductase [Oxalobacter formigenes HOxBLS]
 gi|229378834|gb|EEO28925.1| molybdopterin oxidoreductase [Oxalobacter formigenes HOxBLS]
          Length = 701

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 7   ENCILCKHT--DCVEVCPVDCFYE----GENFLAIH----PDECIDCGVCEPECPVDAIK 56
           + CI C      C+EV   +        G   +        ++CI CG C   CP  AI 
Sbjct: 565 DICIGCGLCELACIEV-GAEALKMVETKGGRMVFKDFTTPAEKCIGCGACTSVCPTGAII 623

Query: 57  PDTEPGLE 64
            +   G  
Sbjct: 624 VEDRDGYR 631


>gi|222056800|ref|YP_002539162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221566089|gb|ACM22061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 665

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF----------LAIHPDECIDCGVCEPECP 51
             V  +NC+ C +  C +VCP     E E              ++P  C  CG C+  CP
Sbjct: 587 ARVNEKNCVGCFY--CKKVCPYGAIEEKEIRDRQGNLIRVVAYVNPGVCGGCGTCQATCP 644

Query: 52  VDAIKPDTEPGLE 64
             +++ D     +
Sbjct: 645 SKSVELDGYTDEQ 657


>gi|94496472|ref|ZP_01303049.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58]
 gi|94424218|gb|EAT09242.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58]
          Length = 161

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG C+  CPVDA+
Sbjct: 60  ERCIACKL--CEAVCPAQAITIEAQPRDDGSRRTTRYDIDMTKCIYCGFCQEACPVDAV 116



 Score = 37.1 bits (85), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 22 PVDCFYEGENFLAIHP---DECIDCGVCEPECPVDAIKPDTEPGLE 64
          P+   + GE+ L  +P   + CI C +CE  CP  AI  + +P  +
Sbjct: 41 PISPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIEAQPRDD 86


>gi|78044864|ref|YP_361206.1| dissimilatory sulfite reductase subunit B [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996979|gb|ABB15878.1| dissimilatory sulfite reductase subunit B [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 352

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 12  CKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    ++ CP            + ++PD+C+ CG C   CP   I      G+ +++
Sbjct: 200 CEIPSVIQSCPTGAIKPNPKLKSVEVNPDKCMYCGNCYTVCPAMPIADPENDGVAIFV 257


>gi|21226528|ref|NP_632450.1| putative ATPase RIL [Methanosarcina mazei Go1]
 gi|20904798|gb|AAM30122.1| RNase L inhibitor [Methanosarcina mazei Go1]
          Length = 588

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 12 CKHTDCVEVCPVDC----------FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C+   C + C   C           +E +    I  + C+ CG+C  +CP +AI
Sbjct: 11 CQPRRCSKECEKYCPRVRTGDETIVFEADGKPVISEELCVGCGICVNKCPFEAI 64


>gi|150016774|ref|YP_001309028.1| hydrogenase large subunit [Clostridium beijerinckii NCIMB 8052]
 gi|149903239|gb|ABR34072.1| hydrogenase large subunit domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 449

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 16  DCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAI 55
            C   CP D     E E    I  D+C++CGVC   C    I
Sbjct: 94  SCQVACPFDAILYDEEERSTYIDNDKCLNCGVCVDSCKHGLI 135


>gi|57237384|ref|YP_178397.1| ferredoxin, 4Fe-4S [Campylobacter jejuni RM1221]
 gi|86151281|ref|ZP_01069496.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153729|ref|ZP_01071932.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|121612302|ref|YP_001000043.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81-176]
 gi|153951895|ref|YP_001398616.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. doylei 269.97]
 gi|167005000|ref|ZP_02270758.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81-176]
 gi|205356017|ref|ZP_03222785.1| ferredoxin [Campylobacter jejuni subsp. jejuni CG8421]
 gi|283955758|ref|ZP_06373249.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 1336]
 gi|57166188|gb|AAW34967.1| ferredoxin, 4Fe-4S [Campylobacter jejuni RM1221]
 gi|85841628|gb|EAQ58875.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842690|gb|EAQ59902.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87250207|gb|EAQ73165.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 81-176]
 gi|152939341|gb|ABS44082.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. doylei 269.97]
 gi|205346141|gb|EDZ32776.1| ferredoxin [Campylobacter jejuni subsp. jejuni CG8421]
 gi|283792713|gb|EFC31491.1| ferredoxin, 4Fe-4S [Campylobacter jejuni subsp. jejuni 1336]
 gi|315057754|gb|ADT72083.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Campylobacter
          jejuni subsp. jejuni S3]
          Length = 94

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV          EGE+   ++ ++C++C        C  
Sbjct: 1  MAVKITDICIACG--SCIDECPVSAIVDDANNPEGEDRYYVYANKCVECVGHNDQPACAS 58

Query: 49 ECPVD 53
           CP D
Sbjct: 59 ACPTD 63



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT---EPGLELWLKIN 70
                D CI CG C  ECPV AI  D    E     ++  N
Sbjct: 1  MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYAN 42


>gi|332994475|gb|AEF04530.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Alteromonas sp.
           SN2]
          Length = 477

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 275 DCIDCNL--CVQVCPTGIDIRNGLQY-----ECINCGACVDAC 310


>gi|295099817|emb|CBK88906.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
          kD subunit (chain I) [Eubacterium cylindroides T2-87]
          Length = 57

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 7  ENCILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAI 55
          + CI C    CV  CPV     + E         CIDCG C   CPV AI
Sbjct: 8  DACIGCG--ACVGGCPVGALSMDDEGKSVCDEGTCIDCGSCVGTCPVGAI 55



 Score = 37.8 bits (87), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 35 IHPDECIDCGVCEPECPVDAIKPDTE 60
          I  D CI CG C   CPV A+  D E
Sbjct: 5  IDKDACIGCGACVGGCPVGALSMDDE 30


>gi|300023557|ref|YP_003756168.1| cytochrome C oxidase accessory protein CcoG [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525378|gb|ADJ23847.1| cytochrome c oxidase accessory protein CcoG [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 494

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCP+       + L     ECI C +C   C
Sbjct: 279 DCIDC--RACVAVCPMGIDIRDGSQL-----ECIQCALCIDAC 314



 Score = 34.7 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 40  CIDCGVCEPECPVD 53
           CIDC  C   CP+ 
Sbjct: 280 CIDCRACVAVCPMG 293


>gi|254786943|ref|YP_003074372.1| cytochrome C oxidase accessory protein CcoG [Teredinibacter
           turnerae T7901]
 gi|237683866|gb|ACR11130.1| cytochrome c oxidase accessory protein CcoG [Teredinibacter
           turnerae T7901]
          Length = 477

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +C  C    CV+VCPVD              ECI+CG+C   C
Sbjct: 273 DCTDCSW--CVQVCPVDIDIRDGLQY-----ECINCGLCVDAC 308


>gi|222053901|ref|YP_002536263.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. FRC-32]
 gi|221563190|gb|ACM19162.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. FRC-32]
          Length = 315

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGEN-FLAIHPDECIDCGVCEPECPVDA 54
            + CI C    C + C       G +     +   CI CG C   CP +A
Sbjct: 170 ADECISCGL--CAKSCTEGAIAMGADGKPEFNAAACIYCGDCVKVCPTEA 217



 Score = 42.1 bits (98), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 11  LCKHTDCVEVCP----VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
                 C   CP     D  ++G  +  +H DECI CG+C   C   AI    +   E
Sbjct: 140 KVGFAGCPFDCPKSATNDVGFQGAIWPELHADECISCGLCAKSCTEGAIAMGADGKPE 197


>gi|218885304|ref|YP_002434625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756258|gb|ACL07157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 491

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 9   CILCKHTDCVEVCPVDC--------FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    C   CPVD           + +   A+    C+ CG C  +CP  A++
Sbjct: 359 CNGCGL--CERACPVDAVSLPVPPGGRKRDRRCAVDEAYCLGCGACALKCPTGALR 412



 Score = 40.1 bits (93), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPG 62
               C  CG+CE  CPVDA+     PG
Sbjct: 355 DASLCNGCGLCERACPVDAVSLPVPPG 381


>gi|210630476|ref|ZP_03296479.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279]
 gi|210160478|gb|EEA91449.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279]
          Length = 421

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 8   NCILCKH-----TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            C+ CK        C++VCPV+   E E+      D C  CG+C   CP +A
Sbjct: 58  PCLACKSDKSGCRACIDVCPVNAI-EIEDGAIDVLDSCRKCGLCVASCPTEA 108



 Score = 43.2 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLAIHPDECIDCGVCEPEC 50
           + C +C    CV  CPV  C         + P  CI CG+C   C
Sbjct: 320 DKCTMCGD--CVAACPVFACDLTANGKFTVEPTYCIGCGLCTEVC 362


>gi|159162230|pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
          Complex Combining Nmr And Soft-Docking
 gi|159162369|pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
          Cytochrome C3 And [fe]-Hydrogenase
          Length = 371

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 9  CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          CI C    C + CP    +   GE     H + CI+CG C   CP +AI  
Sbjct: 9  CIGCD--TCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAIYE 57



 Score = 35.9 bits (82), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDT 59
          F+ I   +CI C  C   CP  AI  + 
Sbjct: 1  FVQIDEAKCIGCDTCSQYCPTAAIFGEM 28


>gi|154149377|ref|YP_001407022.1| ferredoxin, 4Fe-4S [Campylobacter hominis ATCC BAA-381]
 gi|153805386|gb|ABS52393.1| ferredoxin, 4Fe-4S [Campylobacter hominis ATCC BAA-381]
          Length = 94

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCG------VCEP 48
          M   +T+ CI C    C++ CPV    +      GE+   +  D+C++C        C  
Sbjct: 1  MAVKITDICIACG--SCIDECPVSAIVDDSENPTGEDIYYVFADKCVECVGHNDEPACAN 58

Query: 49 ECPVDA--IKPDTEPGLELWLKINSEY 73
           CP D   +  D   G     +I ++ 
Sbjct: 59 ACPTDGCIVWSDVTAGQPSRKEIGADL 85


>gi|148642621|ref|YP_001273134.1| formate dehydrogenase, iron-sulfur subunit [Methanobrevibacter
          smithii ATCC 35061]
 gi|148551638|gb|ABQ86766.1| formate dehydrogenase, iron-sulfur subunit [Methanobrevibacter
          smithii ATCC 35061]
          Length = 167

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          C  C++  CV++CP +             ++CI CG+C   CP  AI
Sbjct: 44 CQHCENAPCVKICPTNAMTTDGVKT----EDCIGCGLCSIICPFGAI 86


>gi|116052165|ref|YP_788991.1| putative iron-sulfur cluster-binding protein [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218889584|ref|YP_002438448.1| putative iron-sulfur protein [Pseudomonas aeruginosa LESB58]
 gi|254237016|ref|ZP_04930339.1| hypothetical protein PACG_03044 [Pseudomonas aeruginosa C3719]
 gi|254242816|ref|ZP_04936138.1| hypothetical protein PA2G_03582 [Pseudomonas aeruginosa 2192]
 gi|115587386|gb|ABJ13401.1| putative iron-sulfur cluster-binding protein [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168947|gb|EAZ54458.1| hypothetical protein PACG_03044 [Pseudomonas aeruginosa C3719]
 gi|126196194|gb|EAZ60257.1| hypothetical protein PA2G_03582 [Pseudomonas aeruginosa 2192]
 gi|218769807|emb|CAW25567.1| probable iron-sulfur protein [Pseudomonas aeruginosa LESB58]
          Length = 573

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP        + L I    CI C  C   C
Sbjct: 372 DCIDC--QQCVQVCPTGIDIR--DGLQI---ACIGCAACVDAC 407


>gi|110833406|ref|YP_692265.1| respiratory nitrate reductase 1 subunit beta [Alcanivorax
           borkumensis SK2]
 gi|110646517|emb|CAL15993.1| Respiratory nitrate reductase 1 beta chain [Alcanivorax borkumensis
           SK2]
          Length = 517

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y  E +  + I  D+C    +C   CP   I  + + G
Sbjct: 184 CEHCLNPTCVASCPSGAIYKREEDGIVLIDQDKCRGWRMCVSGCPYKKIYYNWKSG 239


>gi|20808299|ref|NP_623470.1| MinD family protein [Thermoanaerobacter tengcongensis MB4]
 gi|20516902|gb|AAM25074.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    C E+C  +          ++P  C  CG+C  +CPV+AIK   E
Sbjct: 66  DKCIECGL--CEELCRFNAISN----FEVNPYYCEGCGLCMYKCPVEAIKMVEE 113



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C  +AI
Sbjct: 57 GKETAVIDKDKCIECGLCEELCRFNAI 83


>gi|56477090|ref|YP_158679.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1]
 gi|56313133|emb|CAI07778.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1]
          Length = 689

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 10  ILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             C  ++CVE C  +      + + + P  C  CG C   CP  A+     
Sbjct: 321 RGC--SNCVEACAAEAISSAGDTVRVDPYLCQGCGSCSTVCPSGALASQYP 369



 Score = 45.9 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           V++ C LC    CV  CP        +   L      C+ CG+C   CP +A+
Sbjct: 553 VSDACTLC--MSCVSACPSGALSAASDAMRLGFIEKSCVQCGLCASSCPENAV 603



 Score = 34.7 bits (79), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +  D C+ C  C   CP  AI  D +  
Sbjct: 195 VDLDLCVRCNACIRACPEGAIGWDYQVD 222


>gi|51246607|ref|YP_066491.1| ferredoxin III [Desulfotalea psychrophila LSv54]
 gi|50877644|emb|CAG37484.1| probable ferredoxin III [Desulfotalea psychrophila LSv54]
          Length = 135

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVDAI 55
              +CV  CP   F   +   ++  PDEC+ C  C   CP  AI
Sbjct: 87  GDEECVAACPAQVFEMVDGKASVAEPDECLGCETCVEVCPEGAI 130


>gi|118580575|ref|YP_901825.1| glutamate synthase alpha subunit [Pelobacter propionicus DSM 2379]
 gi|118503285|gb|ABK99767.1| glutamate synthase (NADPH) GltB3 subunit [Pelobacter propionicus
           DSM 2379]
          Length = 771

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 9   CILCKHTD----CVEVCPVDCFYEGEN---FLAIHPDE--CIDCGVCEPECP 51
           CI C        C+E CP       E     +    DE  CI CG+C   CP
Sbjct: 709 CISCGTCRDCSMCLETCPEGAIVRTEKEDGSVEYTSDERYCIGCGICASICP 760


>gi|57168492|ref|ZP_00367626.1| ferredoxin [Campylobacter coli RM2228]
 gi|305432911|ref|ZP_07402069.1| ferredoxin [Campylobacter coli JV20]
 gi|57020300|gb|EAL56974.1| ferredoxin [Campylobacter coli RM2228]
 gi|304444065|gb|EFM36720.1| ferredoxin [Campylobacter coli JV20]
          Length = 81

 Score = 47.1 bits (111), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T++C+ C    C E CP +  YE      I  D C +C        C   CP + 
Sbjct: 1  MALLITKDCVCCD--ACREECPDEAIYEHSPIYVIDADLCSECVNDFSEPACIVACPYEC 58

Query: 55 IKPDTE 60
          I PD +
Sbjct: 59 IIPDPD 64


>gi|332877880|ref|ZP_08445618.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684175|gb|EGJ57034.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 280

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           VV +NC  C   +CV+ CP       +   A   D C  C  C   CPV     DT 
Sbjct: 207 VVNDNCYGCG--ECVDWCPTGAITIADGRSATRVDLCTKCCACVKFCPVGGRTFDTP 261


>gi|324006846|gb|EGB76065.1| formate dehydrogenase, beta subunit [Escherichia coli MS 57-2]
 gi|324020479|gb|EGB89698.1| formate dehydrogenase, beta subunit [Escherichia coli MS 117-3]
          Length = 261

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 59  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 107


>gi|293977801|ref|YP_003543231.1| Fe-S-cluster-containing hydrogenase components 1 [Candidatus Sulcia
           muelleri DMIN]
 gi|292667732|gb|ADE35367.1| Fe-S-cluster-containing hydrogenase components 1 [Candidatus Sulcia
           muelleri DMIN]
          Length = 979

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ +   C  C +  C  VCPV       +G+N +  +   CI    C   CP 
Sbjct: 797 VIFQPIMCQHCNNAPCETVCPVGATTHGKQGQNMMTYN--RCIGTRYCANNCPY 848


>gi|298528807|ref|ZP_07016211.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512459|gb|EFI36361.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1168

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--------EGEN-FLAIHPDECIDCGVCEPECP 51
           T  C  C    C++ CP              G +  + I  + C  CG C   CP
Sbjct: 946 TAGCDGCG--ICIDRCPYAAIKYSACSGEKPGPDPGIWIDEELCEGCGACVSACP 998



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 23/83 (27%), Gaps = 25/83 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECID- 42
            ++    CI C    C E C      E                    +   I    C+  
Sbjct: 101 AFIDPAKCIACNW--CTEACLKAVPDEFNLELKTRKCAYIYYRQSIPSTYVIDQKHCLRL 158

Query: 43  ----CGVCEPECPVDAIKPDTEP 61
               CG+CE  CP  AI  +   
Sbjct: 159 TRGICGICEKICPAGAIDFNEPE 181


>gi|222445704|ref|ZP_03608219.1| hypothetical protein METSMIALI_01345 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435269|gb|EEE42434.1| hypothetical protein METSMIALI_01345 [Methanobrevibacter smithii
           DSM 2375]
          Length = 149

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           VV ++CI C    CV +C +           +   +C  C +C+ ECP ++IK
Sbjct: 95  VVADSCIGCGL--CVSMCSMKAIKLESLKAHVDSIQCCGCQLCKDECPTNSIK 145



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 26  FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
                 F A+  D CI CG+C   C + AIK ++
Sbjct: 86  ICNDREFEAVVADSCIGCGLCVSMCSMKAIKLES 119


>gi|218887477|ref|YP_002436798.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758431|gb|ACL09330.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 777

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 6   TENCILCKHTD----CVEVCPVDCFYEGENF------LAIHPDECIDCGVCEPECP 51
            + C  C        C  +CP       E        +A+  ++CI CG C   CP
Sbjct: 709 GDACASCGACRDCGICETICPQAAISRREVQGGCGFEMAVDAEKCIGCGFCAGACP 764


>gi|251799769|ref|YP_003014500.1| NADH dehydrogenase subunit I [Paenibacillus sp. JDR-2]
 gi|247547395|gb|ACT04414.1| NADH-quinone oxidoreductase, chain I [Paenibacillus sp. JDR-2]
          Length = 149

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 15/66 (22%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFY--------EGENFLAIHP-----DECIDCGVCEPE 49
           + + + CI+C    C  +CP DC            +    I       + CI C +C   
Sbjct: 40  HFIPDLCIVCNQ--CARICPTDCITLTGKPNPDPAKKGKVIDTFDLNFEICILCDLCTEV 97

Query: 50  CPVDAI 55
           CP +AI
Sbjct: 98  CPTEAI 103



 Score = 34.4 bits (78), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 20 VCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
            P + F   + F  I    PD CI C  C   CP D I
Sbjct: 23 SYPDEPFLMPDRFRGIQHFIPDLCIVCNQCARICPTDCI 61


>gi|167627784|ref|YP_001678284.1| iron-sulfur cluster-binding protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597785|gb|ABZ87783.1| iron-sulfur cluster-binding protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 209

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I
Sbjct: 83  CIGCE--KCLLACPVDAIVGSKKLMHTIIESECTGCELCIEPCPMDCI 128



 Score = 35.5 bits (81), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|164660104|ref|XP_001731175.1| hypothetical protein MGL_1358 [Malassezia globosa CBS 7966]
 gi|159105075|gb|EDP43961.1| hypothetical protein MGL_1358 [Malassezia globosa CBS 7966]
          Length = 608

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 6  TENC--ILCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDAI 55
          T+ C    C+  +C   CPV      C           I    CI CG+C  +CP +AI
Sbjct: 19 TDKCKPAKCR-QECKRSCPVVRMGRLCIEVAPTSKIAFISETLCIGCGICVKKCPFEAI 76


>gi|161833691|ref|YP_001597887.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri GWSS]
 gi|152206181|gb|ABS30491.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Candidatus Sulcia muelleri GWSS]
          Length = 977

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 4   VVTEN--CILCKHTDCVEVCPVDC---FYEGENFLAIHPDECIDCGVCEPECPV 52
           V+ +   C  C +  C  VCPV       +G+N +  +   CI    C   CP 
Sbjct: 795 VIFQPIMCQHCNNAPCETVCPVGATTHGKQGQNMMTYN--RCIGTRYCANNCPY 846


>gi|121607137|ref|YP_994944.1| 4Fe-4S ferredoxin [Verminephrobacter eiseniae EF01-2]
 gi|121551777|gb|ABM55926.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Verminephrobacter eiseniae EF01-2]
          Length = 85

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      G     I P +C +C        C   CPV  
Sbjct: 1  MALMITDECINCDV--CEPECPNQAIALGLEIYQIDPHKCTECVGHFDTPQCVQVCPVAC 58

Query: 55 IKPDTEPGLE 64
          I  D +   +
Sbjct: 59 IPADPQHPED 68


>gi|94968872|ref|YP_590920.1| NADH-quinone oxidoreductase, chain I [Candidatus Koribacter
           versatilis Ellin345]
 gi|156632693|sp|Q1IQK4|NUOI2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|94550922|gb|ABF40846.1| NADH dehydrogenase subunit I [Candidatus Koribacter versatilis
           Ellin345]
          Length = 175

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 18/65 (27%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------------EGENFLA----IHPDECIDCGVCEPEC 50
           E C+ C    C   CP +C Y             G    A    I  + CI CG C   C
Sbjct: 60  EKCVAC--FLCAAACPSNCIYIEAAENTETNRVSGAERYAKVYNIDYNRCIFCGYCVEAC 117

Query: 51  PVDAI 55
           P DAI
Sbjct: 118 PTDAI 122


>gi|332799700|ref|YP_004461199.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
 gi|332697435|gb|AEE91892.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Tepidanaerobacter sp. Re1]
          Length = 390

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 7  ENCILCKHTDCVEVCPVDCFY-----EGENFLAIHPDECIDCGVCEPECP 51
          + C  C    C  VCPV C       EG  F  I   +CI C  C   CP
Sbjct: 6  DVCTGCGV--CYNVCPVKCITMKYDSEGFIFPIIDEQQCIKCNKCRENCP 53



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 36 HPDECIDCGVCEPECPVDAI 55
            D C  CGVC   CPV  I
Sbjct: 4  DKDVCTGCGVCYNVCPVKCI 23


>gi|309777240|ref|ZP_07672203.1| putative pyruvate formate-lyase activating enzyme
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915110|gb|EFP60887.1| putative pyruvate formate-lyase activating enzyme
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 298

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
          E C+ C    C +VCP+      +     H + C  C  CE  C  DAI+ 
Sbjct: 51 ERCVSC--RQCEQVCPMQAITFEQGRFTYHEERCQGCRQCERTCLQDAIQF 99



 Score = 34.0 bits (77), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 37 PDECIDCGVCEPECPVDAIKPD 58
           + C+ C  CE  CP+ AI  +
Sbjct: 50 KERCVSCRQCEQVCPMQAITFE 71


>gi|310827641|ref|YP_003959998.1| indolepyruvate oxidoreductase subunit [Eubacterium limosum KIST612]
 gi|308739375|gb|ADO37035.1| indolepyruvate oxidoreductase subunit [Eubacterium limosum KIST612]
          Length = 594

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 4   VVTENCILCKHTDCVEV-CPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           V T+ CI CK   C++  CP   F         I  + C+ C VC   CP  AI  + E
Sbjct: 537 VDTDLCIGCK--KCLKSGCPALAFNSTVPKKSGILEESCLGCEVCLQICPKHAIYVEEE 593


>gi|300957267|ref|ZP_07169495.1| formate dehydrogenase, beta subunit [Escherichia coli MS 175-1]
 gi|300315956|gb|EFJ65740.1| formate dehydrogenase, beta subunit [Escherichia coli MS 175-1]
          Length = 260

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 58  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 106


>gi|294341669|emb|CAZ90088.1| putative 4Fe-4S ferredoxin [Thiomonas sp. 3As]
          Length = 736

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V    C LC    CV  CP     +      L      C+ CG+C   CP DAI+ +
Sbjct: 602 VDASRCTLCL--SCVGACPAGALADNPLAPQLRFIEKNCVQCGLCVKTCPEDAIRLE 656



 Score = 40.5 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 31  NFLAIHPDECIDCGVCEPECPVDA 54
             + I P  C+ CG C   CP  A
Sbjct: 372 EQIEIDPHLCVGCGACTTVCPTGA 395



 Score = 35.5 bits (81), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           +  D C  C  C   CP  AI  D +  L+
Sbjct: 200 VDLDVCTRCNACLAACPEGAIGLDYQIDLQ 229



 Score = 34.0 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +    C  C  C   CP  A+  +       +++ N
Sbjct: 602 VDASRCTLCLSCVGACPAGALADNPLAPQLRFIEKN 637


>gi|317133139|ref|YP_004092453.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3]
 gi|315471118|gb|ADU27722.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3]
          Length = 379

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +V   CI C    C E CP       +    I   +CI C  C   CPV AI
Sbjct: 319 IVRSKCIGCG--KCAESCPRHVIRIEQKKAHIAYTDCIRCFCCHEMCPVKAI 368



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
            I   +CI CG C   CP   I+ + +     +  
Sbjct: 318 VIVRSKCIGCGKCAESCPRHVIRIEQKKAHIAYTD 352


>gi|256846561|ref|ZP_05552018.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2]
 gi|294784148|ref|ZP_06749449.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 3_1_27]
 gi|256718330|gb|EEU31886.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2]
 gi|294488218|gb|EFG35563.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 3_1_27]
          Length = 435

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 6   TENCILCKHTDCVEVCPVD----------CFYEGENFLAIHPDECIDCGVCEPECPVD 53
           T++CI C  + CV  CP+              E E     +  +CI+CG C   CP +
Sbjct: 361 TKSCISC--SKCVSACPMGLAPLMFDRLAAAKEYEEMAVHNLMDCIECGSCAYICPAN 416


>gi|253744485|gb|EET00691.1| Nitroreductase Fd-NR2 [Giardia intestinalis ATCC 50581]
          Length = 264

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAI---HPDECIDCGVCEPECPVDAI 55
          T+ C+ C    CVEVCP            +   + D CI CG C   CP   I
Sbjct: 10 TDTCVGCN--MCVEVCPTMTLKVDPQTKVVAYANRDNCIFCGHCAAICPSSTI 60


>gi|227873973|ref|ZP_03992189.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268]
 gi|227840181|gb|EEJ50595.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268]
          Length = 258

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V++ CI C  T C + CPV              ++C  C  C   CP  AI  
Sbjct: 185 VSDACIGC--TLCAKKCPVQAIEMQNKKPVWVKEDCTMCLGCLHRCPKHAIYY 235


>gi|222530184|ref|YP_002574066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457031|gb|ACM61293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           T  C+ C    CV+ C        E     I  ++C+ CG C   C   A
Sbjct: 193 TSKCVGCG--MCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGA 240


>gi|218961900|ref|YP_001741675.1| putative dihydropyrimidine dehydrogenase [NADP+] (DPD)
           (Dihydrouracil dehydrogenase) (Dihydrothymine
           dehydrogenase) (pydA) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730557|emb|CAO81469.1| putative dihydropyrimidine dehydrogenase [NADP+] (DPD)
           (Dihydrouracil dehydrogenase) (Dihydrothymine
           dehydrogenase) (pydA) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 821

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTE 60
           + E C+ C   +C   CP       E+    I PD+C+ C +C   C   A++   E
Sbjct: 767 IKELCLKCG--NCTR-CPYQAIELDEDCYPKIDPDKCVGCSLCTQLCFAGALEMKNE 820


>gi|221134899|ref|ZP_03561202.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Glaciecola sp.
           HTCC2999]
          Length = 487

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 285 DCIDCNL--CVQVCPTGIDIRNGLQY-----ECINCGACVDAC 320



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 28/65 (43%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE--------CIDCGVCEP 48
           C+ +CP   F                      G       P++        CIDC +C  
Sbjct: 235 CIHMCPYARFQSAMFDKDTFTVAYDARRGEGRGPRSRKTTPEQREEKGLGDCIDCNLCVQ 294

Query: 49  ECPVD 53
            CP  
Sbjct: 295 VCPTG 299


>gi|30061068|gb|AAP19908.1| nitrite reductase [Haemophilus influenzae]
 gi|30061076|gb|AAP19912.1| nitrite reductase [Haemophilus influenzae]
 gi|30061080|gb|AAP19914.1| nitrite reductase [Haemophilus influenzae]
 gi|30061082|gb|AAP19915.1| nitrite reductase [Haemophilus influenzae]
 gi|30061088|gb|AAP19918.1| nitrite reductase [Haemophilus influenzae]
 gi|30061092|gb|AAP19920.1| nitrite reductase [Haemophilus influenzae]
 gi|30061094|gb|AAP19921.1| nitrite reductase [Haemophilus influenzae]
 gi|30061098|gb|AAP19923.1| nitrite reductase [Haemophilus influenzae]
 gi|30061102|gb|AAP19925.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 85


>gi|55981733|ref|YP_145030.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermus
           thermophilus HB8]
 gi|55773146|dbj|BAD71587.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermus
           thermophilus HB8]
          Length = 876

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 9   CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCPV       EG N +  +   C+    C   CP  A + +  P  E 
Sbjct: 692 CQHCEKAPCEAVCPVAATEHSPEGLNLMVYN--RCVGTKYCSANCPYKARRFNFFPYAEA 749

Query: 66  WL 67
           ++
Sbjct: 750 FI 751


>gi|147668770|ref|YP_001213588.1| reductive dehalogenase [Dehalococcoides sp. BAV1]
 gi|146269718|gb|ABQ16710.1| reductive dehalogenase [Dehalococcoides sp. BAV1]
          Length = 480

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKI--NSEYATQWPNITTKK 84
           CIDCG C   CPV AI    E   ++W K   N     +  N   KK
Sbjct: 337 CIDCGRCASVCPVSAINSSRESSWDIWPKDPKNPNLRPELFNNPGKK 383


>gi|116753332|ref|YP_842450.1| putative ATPase RIL [Methanosaeta thermophila PT]
 gi|116664783|gb|ABK13810.1| ABC transporter related protein [Methanosaeta thermophila PT]
          Length = 584

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 2  TYVVTENC--ILCKHTDCVEVCP-----VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            V  + C    C   +C   CP      +     ++   I  + C+ CG+C  +CP  A
Sbjct: 4  AVVNRDRCQPRKC-ARECEYFCPPVRTGDETIVFVDDKPVITENLCVGCGICVRKCPFGA 62

Query: 55 I 55
          I
Sbjct: 63 I 63


>gi|308485667|ref|XP_003105032.1| CRE-ABCE-1 protein [Caenorhabditis remanei]
 gi|308257353|gb|EFP01306.1| CRE-ABCE-1 protein [Caenorhabditis remanei]
          Length = 610

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPVD-----CFY--EGENFLAIHPDECIDCGVCEPECPVDAIK 56
          + C    C    C + CPV+     C          +I    CI CG+C  +CP DAIK
Sbjct: 25 DRCKPKNCG-LACKKACPVNRQGKLCIVVEATSTISSISEILCIGCGICVKKCPYDAIK 82


>gi|302392544|ref|YP_003828364.1| cobyrinic acid ac-diamide synthase [Acetohalobium arabaticum DSM
           5501]
 gi|302204621|gb|ADL13299.1| Cobyrinic acid ac-diamide synthase [Acetohalobium arabaticum DSM
           5501]
          Length = 288

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 23/118 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E CI C    C ++C         +   I   +C  CG+C  +CP DA++   E    ++
Sbjct: 66  EECIDCGL--CKKLCNFGAVT---DDYEIDEVKCEGCGLCAAKCPTDALQLTVEKTGNIF 120

Query: 67  LK-------------INSEYATQWPNITTKKESLPSAAKMDGVKQKYEKYFSPNPGGK 111
           L              I +E + +  +  ++K     A ++   ++K       +PG  
Sbjct: 121 LSRSRFGPMVHAKLGIGAENSGKLVSEVSQK-----AEEIAKEQEKDLVLIDGSPGIG 173



 Score = 39.0 bits (90), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
          G        +ECIDCG+C+  C   A+  D E   
Sbjct: 57 GGKVAVKDEEECIDCGLCKKLCNFGAVTDDYEIDE 91


>gi|300919081|ref|ZP_07135623.1| formate dehydrogenase, beta subunit [Escherichia coli MS 115-1]
 gi|300413820|gb|EFJ97130.1| formate dehydrogenase, beta subunit [Escherichia coli MS 115-1]
          Length = 275

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 73  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 121


>gi|295676045|ref|YP_003604569.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002]
 gi|295435888|gb|ADG15058.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002]
          Length = 162

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|269103785|ref|ZP_06156482.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163683|gb|EEZ42179.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 445

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 245 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 280



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 25/66 (37%)

Query: 13  KHTDCVEVCPVDCFY--------------------EGENFLAIHPDE-----CIDCGVCE 47
           + T C+ +CP   F                      G       P +     CIDC +C 
Sbjct: 194 RATVCLHMCPYARFQSAMFDKDTYIVAYHNDRAEPRGPRSRKQDPKQLGLGDCIDCNLCV 253

Query: 48  PECPVD 53
             CP  
Sbjct: 254 QVCPTG 259


>gi|262273090|ref|ZP_06050907.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Grimontia hollisae CIP 101886]
 gi|262222846|gb|EEY74154.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Grimontia hollisae CIP 101886]
          Length = 475

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 37.8 bits (87), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P       CIDC +C   CP
Sbjct: 226 CIHMCPYARFQSAMFDKDTFIVGYDAKRGETRGPRSRKADPKTMGLGDCIDCNLCVQVCP 285

Query: 52  VD 53
             
Sbjct: 286 TG 287


>gi|260775005|ref|ZP_05883905.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609095|gb|EEX35254.1| type cbb3 cytochrome oxidase biogenesis protein CcoG involved in Cu
           oxidation [Vibrio coralliilyticus ATCC BAA-450]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 37.1 bits (85), Expect = 0.93,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 19/76 (25%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        CV +CP   F                      G       P     
Sbjct: 212 GCTYANAGWMRSIMCVHMCPYARFQSAMFDKDTFIVGYDTKRGESRGARSRKADPKALGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|241765323|ref|ZP_04763300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364961|gb|EER59886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 584

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAI 55
           + C LC    CV  CP     +      L      C+ CG+C   CP +AI
Sbjct: 453 DRCTLCL--SCVSACPASALQDNPQLPQLRFIEQNCVQCGLCVTTCPENAI 501



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 10  ILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           + C    CV++C  +          + ++P+ C+ CG C   CP  A+        + 
Sbjct: 201 VGCN--ACVDICSAEAIASDRSRQQIKVNPNLCVGCGACTTVCPTGALTYAYPGATDQ 256



 Score = 37.8 bits (87), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           I  D C  C  C   CP +AI  D +  L
Sbjct: 75  IDLDLCTRCNACVAACPENAIGLDYQIDL 103



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 35  IHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           +  D C  C  C   CP  A++ + +     +++ N
Sbjct: 450 VDKDRCTLCLSCVSACPASALQDNPQLPQLRFIEQN 485



 Score = 35.5 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPV-DAIKPDTEPGLEL 65
           + C  C    CV  CP +          I    C     C   C V  AI  + E     
Sbjct: 78  DLCTRCN--ACVAACPENAIGLD---YQIDLAACQSHRACVKACQVAGAIDFNREAAQHQ 132


>gi|226314304|ref|YP_002774200.1| electron transfer protein [Brevibacillus brevis NBRC 100599]
 gi|226097254|dbj|BAH45696.1| putative electron transfer protein [Brevibacillus brevis NBRC
           100599]
          Length = 189

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHP--DECIDCGVCEPECPVDAIKPDTEP 61
            +   C  C +  C   CP       +N   +    ++CI C  C   CP    K D E 
Sbjct: 48  TIPLMCFHCVNPACARSCPAQAIQIADNGAVLSALVEKCIGCQNCTIACPYGIPKFDEEQ 107

Query: 62  GL 63
            L
Sbjct: 108 NL 109


>gi|218711009|ref|YP_002418630.1| putative nitrogen fixation protein fixG [Vibrio splendidus LGP32]
 gi|218324028|emb|CAV20390.1| putative nitrogen fixation protein fixG [Vibrio splendidus LGP32]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        C+ +CP   F                      G       P E   
Sbjct: 212 GCTYANAGWMRSIVCLHMCPYARFQSAMFDKDTFIVGYDTERGESRGPRSRKADPKELGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|220935354|ref|YP_002514253.1| sulfite reductase, dissimilatory-type beta subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996664|gb|ACL73266.1| sulfite reductase, dissimilatory-type beta subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 359

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C P CP   I       L +W+
Sbjct: 205 CERPSVVARCPVAAIRPALVNGKPSLEVDEKKCICCGACYPPCPPMQINDAEHTKLAIWV 264

Query: 68  KINSEYATQWPN 79
             N   A   P 
Sbjct: 265 GGNHSNARGKPT 276


>gi|209693676|ref|YP_002261604.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
 gi|208007627|emb|CAQ77731.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308


>gi|197334088|ref|YP_002157335.1| cytochrome c oxidase accessory protein CcoG [Vibrio fischeri MJ11]
 gi|197315578|gb|ACH65025.1| cytochrome c oxidase accessory protein CcoG [Vibrio fischeri MJ11]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        C+ +CP   F                      G       P E   
Sbjct: 212 GCTYGNAGWMRSIVCLHMCPYARFQSAMFDKDTYIVGYDPKRGEARGPRSRKKDPKELGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|170761054|ref|YP_001787600.1| iron-sulfur binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408043|gb|ACA56454.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 277

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 4   VVTEN-CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           ++ +N C+ C    CV VC  + F + ++ + +    C  CG C+  C  +AI  D   
Sbjct: 60  IIDDNKCVNCG--ACVNVCQFNAFAKIKDGIMLFQKLCHGCGACKIACKYNAITYDKRE 116


>gi|148978308|ref|ZP_01814813.1| FixG-related protein [Vibrionales bacterium SWAT-3]
 gi|145962467|gb|EDK27745.1| FixG-related protein [Vibrionales bacterium SWAT-3]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        C+ +CP   F                      G       P     
Sbjct: 212 GCTYANAGWMRSIVCLHMCPYARFQSAMFDKDTFIVGYDTERGESRGPRSRKADPKALGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|59713158|ref|YP_205934.1| hypothetical protein VF_2551 [Vibrio fischeri ES114]
 gi|59481259|gb|AAW87046.1| hypothetical protein VF_2551 [Vibrio fischeri ES114]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        C+ +CP   F                      G       P E   
Sbjct: 212 GCTYGNAGWMRSIVCLHMCPYARFQSAMFDKDTYIVGYDPKRGEARGPRSRKKDPKELGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|78223273|ref|YP_385020.1| electron transfer flavoprotein subunit alpha [Geobacter
          metallireducens GS-15]
 gi|78194528|gb|ABB32295.1| Electron transfer flavoprotein, alpha subunit [Geobacter
          metallireducens GS-15]
          Length = 448

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 9  CILCKHTDCVEVCPVDCF-YEGENFLAIHPDECIDCGVCEPECPVDAIK----PDTEPGL 63
          CI C    C   CPVD           +  ++CI C  C   C   A++    P+    L
Sbjct: 22 CIACGAR-CESSCPVDGIEMNAAGEPTVLGEKCIGCAKCVKVCAAGALEMFYTPEELELL 80

Query: 64 ELW 66
          + W
Sbjct: 81 KQW 83



 Score = 33.6 bits (76), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 39 ECIDCGV-CEPECPVDAIK 56
          +CI CG  CE  CPVD I+
Sbjct: 21 KCIACGARCESSCPVDGIE 39


>gi|89896835|ref|YP_520322.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
 gi|89336283|dbj|BAE85878.1| putative anaerobic DMSO reductase chain B iron-sulfur subunit
           [Desulfitobacterium hafniense Y51]
          Length = 191

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKP 57
            Y  + +C  C    CVE CP    +  E+    H   +CI C  C   CP    + 
Sbjct: 51  AYHYSGSCNHCAQPKCVEGCPTGAMHVAEDGTVQHDRAKCIGCRYCTWACPYGVPQF 107


>gi|86147140|ref|ZP_01065456.1| FixG-related protein [Vibrio sp. MED222]
 gi|85835024|gb|EAQ53166.1| FixG-related protein [Vibrio sp. MED222]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        C+ +CP   F                      G       P E   
Sbjct: 212 GCTYANAGWMRSIVCLHMCPYARFQSAMFDKDTFIVGYDTERGESRGPRSRKADPKELGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|84393430|ref|ZP_00992187.1| FixG-related protein [Vibrio splendidus 12B01]
 gi|84375946|gb|EAP92836.1| FixG-related protein [Vibrio splendidus 12B01]
          Length = 472

 Score = 47.1 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP                ECI+CG C   C
Sbjct: 273 DCIDCNL--CVQVCPTGIDIRDGLQY-----ECINCGACIDAC 308



 Score = 37.8 bits (87), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 33/76 (43%)

Query: 11  LCKHTD--------CVEVCPVDCF--------------------YEGENFLAIHPDE--- 39
            C + +        C+ +CP   F                      G       P E   
Sbjct: 212 GCTYANAGWMRSIVCLHMCPYARFQSAMFDKDTFIVGYDTERGESRGPRSRKADPKELGL 271

Query: 40  --CIDCGVCEPECPVD 53
             CIDC +C   CP  
Sbjct: 272 GDCIDCNLCVQVCPTG 287


>gi|313683280|ref|YP_004061018.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
          kujiense DSM 16994]
 gi|313156140|gb|ADR34818.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
          kujiense DSM 16994]
          Length = 94

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 14/65 (21%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCG------VCEP 48
          M  V+ + CI C    C++ CPV+   +      GE    ++ D+C++C        C  
Sbjct: 1  MAVVINDTCINCG--ACIDECPVEAIVDEDDNPTGEEIYYVYGDKCVECVGHHDEPACAT 58

Query: 49 ECPVD 53
           CP +
Sbjct: 59 ACPTE 63



 Score = 40.1 bits (93), Expect = 0.098,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTE 60
             +  D CI+CG C  ECPV+AI  + +
Sbjct: 1  MAVVINDTCINCGACIDECPVEAIVDEDD 29


>gi|307354206|ref|YP_003895257.1| ABC transporter-like protein [Methanoplanus petrolearius DSM
          11571]
 gi|307157439|gb|ADN36819.1| ABC transporter related protein [Methanoplanus petrolearius DSM
          11571]
          Length = 591

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 7  ENC--ILCKHTDCVEVCP-----VDCFYEGEN-FLAIHPDECIDCGVCEPECPVDAIKPD 58
          + C    C   +C+  CP      +    GE+  + I  + C+ CG+C  +CP +A+   
Sbjct: 9  DRCHSKKCG-KECIIYCPRVRTGDETVVIGEDGKIVISEELCVGCGICVKKCPFEALDIV 67

Query: 59 TEPGLELW 66
          T P    +
Sbjct: 68 TLPEELEF 75


>gi|239628144|ref|ZP_04671175.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518290|gb|EEQ58156.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 693

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV  C V      +    I PD CI CG C   CP  A
Sbjct: 11 CKHC--YKCVRYCDVKAIQVKDERAVIMPDRCILCGHCLKICPQSA 54


>gi|262197692|ref|YP_003268901.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081039|gb|ACY17008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 204

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 9   CILCKHTDCVEVCPVDCFY----EGENF--------LAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C  VCP +C      E ++           I    C+ CG+C   CP DAI+
Sbjct: 102 CVAC--MCCPTVCPANCITIIPAETDDQGIEKYPAVFEIDELRCVVCGLCVESCPCDAIR 159

Query: 57  PDT 59
            DT
Sbjct: 160 MDT 162


>gi|225387424|ref|ZP_03757188.1| hypothetical protein CLOSTASPAR_01177 [Clostridium asparagiforme
           DSM 15981]
 gi|225046469|gb|EEG56715.1| hypothetical protein CLOSTASPAR_01177 [Clostridium asparagiforme
           DSM 15981]
          Length = 169

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 8   NCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
            C+ C    CV  CP  C    E           CI C  C   CP  A     +  ++ 
Sbjct: 57  ACMHCPEAPCVLACPAGCIKKDEATGLTLYDNTHCIGCHSCAMACPFGAPAFTPDGKMQK 116


>gi|197303420|ref|ZP_03168459.1| hypothetical protein RUMLAC_02142 [Ruminococcus lactaris ATCC
           29176]
 gi|197297418|gb|EDY31979.1| hypothetical protein RUMLAC_02142 [Ruminococcus lactaris ATCC
           29176]
          Length = 298

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C    C + C +D    +  N    HP ECI CG C   CP DAI  
Sbjct: 238 DKCIGC--QQCTKACKMDVNVLKTPN----HP-ECIRCGACMKVCPKDAIHY 282


>gi|76666801|emb|CAJ31179.1| Adenylylsulfate reductase, subunit B [uncultured sulfate-reducing
          bacterium]
          Length = 146

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 2  TYVVTENCILCKH---TDCVEVCPVD-CFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
          ++V+ + C  CK    T C  VCP D    + +  +A +  P+ C +C  C   CPV AI
Sbjct: 3  SFVLADKCDGCKALDKTACQYVCPNDLMVLDQDKMMAFNREPEMCWECYSCVKICPVQAI 62

Query: 56 K 56
          +
Sbjct: 63 E 63


>gi|134298337|ref|YP_001111833.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051037|gb|ABO49008.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 261

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPG 62
            V + C  CK   C   C    F + +    I+ P  C+ C  C   CP +  K   E  
Sbjct: 67  FVKQQCFHCKEPACASACFAKAFQKTKEGPVIYYPHLCVGCRYCMVACPFNVPKYQWEKA 126

Query: 63  L 63
            
Sbjct: 127 F 127


>gi|150017314|ref|YP_001309568.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903779|gb|ABR34612.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 283

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           CI      CV  CP      GEN L  ++  +C  CG CE  CP + I+
Sbjct: 142 CIG--FGTCVSSCPFGAMTMGENGLPVVNRKKCTGCGKCEESCPKNVIQ 188



 Score = 34.7 bits (79), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 26/68 (38%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--------------------ECIDCGVCEP 48
           C  C    C E CP +        ++I+                       CI CG+C  
Sbjct: 172 CTGCG--KCEESCPKNVI----QMISINARVKVDCNSKDKGSIARKLCSAACIGCGLCAK 225

Query: 49  ECPVDAIK 56
            C   AI+
Sbjct: 226 NCSYGAIQ 233


>gi|119357226|ref|YP_911870.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chlorobium phaeobacteroides DSM 266]
 gi|119354575|gb|ABL65446.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
          phaeobacteroides DSM 266]
          Length = 62

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV     G++   I    C +C        C   CP + 
Sbjct: 1  MALYITEECTYCG--ACEPECPVTAIAAGDDIYVIDAGTCTECVGYADAPACVAVCPAEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|332285009|ref|YP_004416920.1| NADH dehydrogenase subunit I [Pusillimonas sp. T7-7]
 gi|330428962|gb|AEC20296.1| NADH dehydrogenase subunit I [Pusillimonas sp. T7-7]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP         E ++         I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAISIESEERDDGTRRTTRYDIDLAKCIFCGFCEESCPVDSI 117



 Score = 36.7 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPALAISIESEERDD 87


>gi|270264163|ref|ZP_06192430.1| hypothetical protein SOD_g00940 [Serratia odorifera 4Rx13]
 gi|270041812|gb|EFA14909.1| hypothetical protein SOD_g00940 [Serratia odorifera 4Rx13]
          Length = 299

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 155



 Score = 38.6 bits (89), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVDVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 184 IHFGTKDAMKQ 194


>gi|258542572|ref|YP_003188005.1| formate dehydrogenase subunit beta [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633650|dbj|BAH99625.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636709|dbj|BAI02678.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639762|dbj|BAI05724.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642818|dbj|BAI08773.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645873|dbj|BAI11821.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648926|dbj|BAI14867.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651913|dbj|BAI17847.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654970|dbj|BAI20897.1| formate dehydrogenase beta subunit [Acetobacter pasteurianus IFO
           3283-12]
          Length = 311

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           E C+ C+   C++ CP      +  N +     ++CI CG C   CP D
Sbjct: 99  EGCMHCEDPGCLKACPSPGAILQFANGIVDFQSEQCIGCGYCIAGCPFD 147



 Score = 38.6 bits (89), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N       +C  C           C   CP  A
Sbjct: 131 SEQCIGCGY--CIAGCPFDIPRINSKDNKAY----KCTLCADRVAVGQEPACVKTCPTGA 184

Query: 55  IKPDTEPGLEL 65
           I   ++  ++ 
Sbjct: 185 ISFGSKAEMKD 195


>gi|239817316|ref|YP_002946226.1| 4Fe-4S ferredoxin, iron-sulfur binding [Variovorax paradoxus
          S110]
 gi|239803893|gb|ACS20960.1| 4Fe-4S ferredoxin, iron-sulfur binding [Variovorax paradoxus
          S110]
          Length = 95

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAI 55
          +T+ CI C    C   CP D  Y G  F  I P +C +C        C   CPV  I
Sbjct: 2  ITDECINCDV--CEPECPNDAIYMGAEFYEIDPHKCTECVGHFDEPQCVQVCPVACI 56



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/23 (69%), Positives = 17/23 (73%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          DECI+C VCEPECP DAI    E
Sbjct: 4  DECINCDVCEPECPNDAIYMGAE 26


>gi|71906356|ref|YP_283943.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71845977|gb|AAZ45473.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 472

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 8/46 (17%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC-PV 52
           +C+ C    CV VCP                ECI CG C   C PV
Sbjct: 266 DCVDCGL--CVAVCPTGIDIRKGQQY-----ECIGCGACIDVCDPV 304



 Score = 37.4 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF---YEGENFLAI--HPD--------------------ECIDCGVCEPECP 51
           C  +CP   F       + L I   P+                    +C+DCG+C   CP
Sbjct: 219 CKYMCPYARFQGVMFDPDTLVITYDPERGEPRGARKKGVDAKAAGAGDCVDCGLCVAVCP 278

Query: 52  VD 53
             
Sbjct: 279 TG 280


>gi|76803110|ref|YP_331205.1| anaerobic dehydrogenase iron-sulfur binding subunit 2 [Natronomonas
           pharaonis DSM 2160]
 gi|76558975|emb|CAI50571.1| anaerobic dehydrogenase (probable formate dehydrogenase, dimethyl
           sulfoxide reductase), iron-sulfur binding subunit 2
           [Natronomonas pharaonis DSM 2160]
          Length = 199

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           C  C    CV+VCP D     ++    +  D CI C  C   CP  A +   
Sbjct: 61  CYNCAEAPCVDVCPTDALLFRDDGTVRVSGDLCIGCHYCGVGCPFGAPQYPD 112


>gi|6685747|sp|P56815|PORD_METTH RecName: Full=Pyruvate synthase subunit porD; AltName:
          Full=Pyruvate oxidoreductase delta chain; Short=POR;
          AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit
          delta
          Length = 81

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          + CI C   +C+  CP  C         I  D C  CG+C  +CPV AIK + E
Sbjct: 32 DKCIDCD--NCILFCPEGCINREHE---IDYDYCKGCGICAEKCPVKAIKMERE 80


>gi|226944106|ref|YP_002799179.1| cytochrome c oxidase accessory protein CcoG [Azotobacter vinelandii
           DJ]
 gi|226719033|gb|ACO78204.1| cytochrome c oxidase accessory protein CcoG [Azotobacter vinelandii
           DJ]
          Length = 470

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP      +G  F      ECI C  C   C
Sbjct: 268 DCIDC--TMCVQVCPTGIDIRDGLQF------ECIGCAACIDAC 303



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCFY--------------------EGENFLAIHPDE-----CIDCGVCEPECP 51
           CV +CP   F                      G     I         CIDC +C   CP
Sbjct: 221 CVHMCPYARFQSVMFDKDTLIVSYDPNRGEQRGPRKKNIDYKAQGLGDCIDCTMCVQVCP 280

Query: 52  VD 53
             
Sbjct: 281 TG 282


>gi|331088814|ref|ZP_08337724.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407337|gb|EGG86840.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 291

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C  VC +D    +  N    HP ECI CG C   CP DAI
Sbjct: 234 EKCVGC--QKCSRVCKMDVNVVDTPN----HP-ECIRCGECMKACPTDAI 276


>gi|327539612|gb|EGF26220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Rhodopirellula baltica WH47]
          Length = 41

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 52 VDAIKPDT--EPGLELWLKINSEYATQWPNITTKKESLPS 89
          ++AI  +       + ++++N+E + +   IT KKE L  
Sbjct: 1  MEAIFHEDNLPEEWQSYIELNAEMSEKTEVITEKKEPLAD 40


>gi|325294342|ref|YP_004280856.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325064790|gb|ADY72797.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 450

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKP 57
          + C+ C    C   CP D    G      +    CI+CG C   CP  AI+ 
Sbjct: 42 DKCVGCD--TCKGHCPADAIKGGLGVAHSVDIMRCINCGQCLVNCPFGAIEQ 91



 Score = 38.2 bits (88), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 22 PVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIK 56
          P+  +  GE    + I+ D+C+ C  C+  CP DAIK
Sbjct: 24 PLGTYRPGELKGIVRINQDKCVGCDTCKGHCPADAIK 60


>gi|288870730|ref|ZP_06409883.1| ferredoxin 2 [Clostridium hathewayi DSM 13479]
 gi|288866077|gb|EFC98375.1| ferredoxin 2 [Clostridium hathewayi DSM 13479]
          Length = 451

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          CI     +C++ CP            I+   CIDCG C   CP  A
Sbjct: 3  CI-----NCIKRCPTQAIRVRNGKAQINSKFCIDCGECIRVCPHHA 43


>gi|269139087|ref|YP_003295788.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202]
 gi|267984748|gb|ACY84577.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202]
 gi|304559016|gb|ADM41680.1| Anaerobic sulfite reductase subunit C [Edwardsiella tarda FL6-60]
          Length = 335

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 3   YVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           +   E CI C    CV  C    VDC              CI CG C   CP  A
Sbjct: 174 HFTPERCIGCG--ACVRACKHHAVDCLSLLNGKATKQESLCIGCGECVLACPTLA 226



 Score = 38.2 bits (88), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           DC +    D    G   +   P+ CI CG C   C   A+
Sbjct: 156 DCAKATMADLGILGVARIHFTPERCIGCGACVRACKHHAV 195


>gi|288932558|ref|YP_003436618.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
 gi|288894806|gb|ADC66343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
          placidus DSM 10642]
          Length = 97

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
          E CI C    C ++CP       E     +PD+C  C  C  ECP  AI     P
Sbjct: 7  EKCISCG--KCEKICPSSAIKMNEFPQLAYPDKCWHCAACVKECPAKAITLLLPP 59



 Score = 34.4 bits (78), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           + I+ ++CI CG CE  CP  AIK +  P L
Sbjct: 1  MIKIYREKCISCGKCEKICPSSAIKMNEFPQL 32


>gi|298528929|ref|ZP_07016332.1| adenylylsulfate reductase, beta subunit [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298510365|gb|EFI34268.1| adenylylsulfate reductase, beta subunit [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 164

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 2  TYVVTENCILCKH---TDCVEVCPVD-CFYEGENFLAIH--PDECIDCGVCEPECPVDAI 55
          T+V  E C  CK    T C+ +CP D    + E  LA +  PD C +C  C   CP  AI
Sbjct: 3  TFVNPEKCDGCKGGEKTACMYICPNDLMILDPEAMLAYNQEPDACWECYSCVKICPQGAI 62

Query: 56 K 56
          +
Sbjct: 63 E 63


>gi|170760276|ref|YP_001787576.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407265|gb|ACA55676.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 272

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           NCI CK   C  +CP+      E+ + ++   CI C  C  +CPV+A   D    L+   
Sbjct: 201 NCIDCKL--CANLCPMGSIDF-EDVIKLN-GICIKCCACIKKCPVEAKYFDDSGYLKHKK 256

Query: 68  KINSEY 73
           ++ + +
Sbjct: 257 ELENNF 262


>gi|167396277|ref|XP_001741988.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893184|gb|EDR21524.1| hypothetical protein EDI_289580 [Entamoeba dispar SAW760]
          Length = 189

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIH-PDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
          CI C    CV +CP            +  P+ C+ CG C   CPV AI  +     ++ +
Sbjct: 12 CIGCLQ--CVRICPTKVLTSTHMKSTVSFPERCVSCGCCTSVCPVGAIIFNGISPQKIDI 69

Query: 68 K 68
          +
Sbjct: 70 E 70


>gi|156742067|ref|YP_001432196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus castenholzii DSM 13941]
 gi|156233395|gb|ABU58178.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 449

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-------------LAIHPDECIDCGVCEPECPVD 53
           E C  C    C  +CP    +  +                 I  D C+ CG+C   CP D
Sbjct: 94  ELCTSC--FQCQRICPPQVIHMTQARDPSTGKPVPAVAEFLIEYDACMSCGLCAEVCPFD 151

Query: 54  AIKPDTE 60
           AIK D E
Sbjct: 152 AIKMDHE 158


>gi|91790139|ref|YP_551091.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91699364|gb|ABE46193.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C  T CV+VCP                ECI C  C   C     K +   GL  + 
Sbjct: 270 ACVDC--TLCVQVCPTGIDIRNGLQY-----ECIGCAACIDACDGVMDKMNYPRGLIRFT 322

Query: 68  KINSEYATQW 77
             N+  A  W
Sbjct: 323 TQNA-LAQHW 331


>gi|78355699|ref|YP_387148.1| hypothetical protein Dde_0652 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218104|gb|ABB37453.1| hypothetical protein Dde_0652 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 367

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
           + C  C    C   C V  F +  +     +P  C+ C  C   CP +    +
Sbjct: 106 QQCNHCLEPACASACFVKAFTKNPDGSVTYNPKLCVGCRYCMIACPFNVPAFE 158


>gi|15899480|ref|NP_344085.1| hypothetical protein SSO2764 [Sulfolobus solfataricus P2]
 gi|284174272|ref|ZP_06388241.1| hypothetical protein Ssol98_06387 [Sulfolobus solfataricus 98/2]
 gi|13816099|gb|AAK42875.1| Hypothetical protein SSO2764 [Sulfolobus solfataricus P2]
 gi|261601251|gb|ACX90854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 627

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 14/67 (20%)

Query: 9   CILCKHTDCVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           C+ CK  DC   CPV           +GE        +C+  G C   CP D I      
Sbjct: 563 CVNCKTVDCASACPVGITDMRGWFIKKGEFKSF----KCVGLGECVNACPYDNIFF---Y 615

Query: 62  GLELWLK 68
            +  W+K
Sbjct: 616 DVRHWIK 622


>gi|194337338|ref|YP_002019132.1| sulfite reductase, dissimilatory-type beta subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309815|gb|ACF44515.1| sulfite reductase, dissimilatory-type beta subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 359

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 12  CKHTDCVEVCPVDCFYE----GENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C+    V  CPV         G+  L +   +CI CG C   CP   I         +W+
Sbjct: 205 CELPKAVTRCPVAAIRPTMVNGKRSLMVDEAKCICCGACFGACPSMEINHPEHSKFAIWV 264


>gi|332796874|ref|YP_004458374.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1]
 gi|332694609|gb|AEE94076.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1]
          Length = 164

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCF----YEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  +CP D      Y+G+    I+   C+ CG C   CPVDA+K 
Sbjct: 59  DVCIGC--TLCAMICPADAMKMMTYQGKKLPTINYGRCVFCGFCVDICPVDALKE 111


>gi|328789971|ref|XP_623630.2| PREDICTED: ATP-binding cassette sub-family E member 1 isoform 1
          [Apis mellifera]
          Length = 583

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
          V ++ C    C+  +C   CPV      C     N    +I  + CI CG+C  +CP +A
Sbjct: 19 VNSDKCKPKRCR-QECKRSCPVVRMGKLCIEVNPNSKIASISEELCIGCGICVKKCPFEA 77

Query: 55 I 55
          I
Sbjct: 78 I 78


>gi|324012565|gb|EGB81784.1| formate dehydrogenase, beta subunit [Escherichia coli MS 60-1]
          Length = 291

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 89  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 137


>gi|315300250|gb|EFU59487.1| formate dehydrogenase, beta subunit [Escherichia coli MS 16-3]
          Length = 291

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 89  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 137


>gi|300931673|ref|ZP_07146980.1| formate dehydrogenase, beta subunit [Escherichia coli MS 187-1]
 gi|300460512|gb|EFK24005.1| formate dehydrogenase, beta subunit [Escherichia coli MS 187-1]
          Length = 293

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 91  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 139


>gi|269140680|ref|YP_003297381.1| formate dehydrogenase-N beta subunit [Edwardsiella tarda EIB202]
 gi|267986341|gb|ACY86170.1| formate dehydrogenase-N beta subunit [Edwardsiella tarda EIB202]
 gi|304560465|gb|ADM43129.1| Formate dehydrogenase N beta subunit [Edwardsiella tarda FL6-60]
          Length = 317

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E 
Sbjct: 98  DGCMHCADPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNPED 154



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECID---CG---VCEPECPVDAIKPD 58
           +E+CI C +  C+  CP +      E+        C+D    G    C   CP  AI   
Sbjct: 130 SEHCIGCGY--CIAGCPFNVPRMNPEDKRVYKCTLCVDRVAVGQEPACVKTCPTGAIHFG 187

Query: 59  TEPGLE 64
           T+  ++
Sbjct: 188 TKAAMK 193


>gi|237653609|ref|YP_002889923.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
          MZ1T]
 gi|237624856|gb|ACR01546.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
          MZ1T]
          Length = 80

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-GV-----CEPECPVDA 54
          M  ++ ++C  C    CVE CP +    G     I P +C +C G      C+  CP D 
Sbjct: 1  MALLINDDCTACD--ACVEECPNEAITAGNPIYVIDPGKCSECVGAFDEPQCKLVCPADC 58

Query: 55 IK--PDTEPGLEL 65
          IK  PD     + 
Sbjct: 59 IKDHPDYRESQDE 71


>gi|223984301|ref|ZP_03634445.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM
           12042]
 gi|223963734|gb|EEF68102.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM
           12042]
          Length = 384

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           V  E C  C    C ++C        EN  + I    C+ CG C   C  DAI+P  +  
Sbjct: 207 VNPEQCRSCG--MCQKICAHSALNFDENHKMHIDHSRCVGCGRCIGMCNFDAIEPMNDEA 264

Query: 63  LELWLKINSEYA 74
            ++  +  +EY+
Sbjct: 265 NDILNEKIAEYS 276


>gi|48477627|ref|YP_023333.1| putative ATPase RIL [Picrophilus torridus DSM 9790]
 gi|48430275|gb|AAT43140.1| RNase L inhibitor homolog, predicted ATPase [Picrophilus torridus
          DSM 9790]
          Length = 588

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 16/72 (22%)

Query: 12 CKHTDCVEVCPVDC-----------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          C    C   C   C           F + +    I  + CI CG+C   CP +AIK  T 
Sbjct: 11 CHPKKCNHECRYYCPPVRSGSKTIEFPDVDAQPVITENLCIGCGICVRRCPFNAIKIVTI 70

Query: 61 PGLELWLKINSE 72
          P      ++N +
Sbjct: 71 PD-----ELNKK 77


>gi|116748590|ref|YP_845277.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697654|gb|ABK16842.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 260

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCP    ++  + +  +    CI C  C   CP  A
Sbjct: 121 CNHCANPPCVRVCPTKATFKSPDGITMMDFHRCIGCRYCMAGCPYGA 167


>gi|300985955|ref|ZP_07177661.1| formate dehydrogenase, beta subunit [Escherichia coli MS 200-1]
 gi|300306491|gb|EFJ61011.1| formate dehydrogenase, beta subunit [Escherichia coli MS 200-1]
          Length = 297

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 95  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 143


>gi|253572642|ref|ZP_04850043.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298386288|ref|ZP_06995844.1| ferredoxin [Bacteroides sp. 1_1_14]
 gi|251837774|gb|EES65864.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298260665|gb|EFI03533.1| ferredoxin [Bacteroides sp. 1_1_14]
          Length = 319

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    C   CP     +G+  L  + ++CI C  C   C   A K DT 
Sbjct: 252 CTHCG--ICAARCPAGAITKGDE-LNTNAEKCIKCCACVKACANKARKYDTP 300



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
               C  CG+C   CP  AI    E
Sbjct: 248 DESLCTHCGICAARCPAGAITKGDE 272


>gi|238921563|ref|YP_002935078.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Edwardsiella ictaluri 93-146]
 gi|238871132|gb|ACR70843.1| formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
           [Edwardsiella ictaluri 93-146]
          Length = 317

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEP 61
           + C+ C    C++ CP      +  N +     + CI CG C   CP +  + + E 
Sbjct: 98  DGCMHCADPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNVPRMNPED 154



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECID---CG---VCEPECPVDAIKPD 58
           +E+CI C +  C+  CP +      E+        C+D    G    C   CP  AI   
Sbjct: 130 SEHCIGCGY--CIAGCPFNVPRMNPEDKRVYKCTLCVDRVTVGQEPACVKTCPTGAIHFG 187

Query: 59  TEPGLE 64
           T+  ++
Sbjct: 188 TKAAMK 193


>gi|238754042|ref|ZP_04615401.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia ruckeri ATCC
           29473]
 gi|238707794|gb|EEQ00153.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia ruckeri ATCC
           29473]
          Length = 321

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     + CI CG C   CP D
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFD 146



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDIPRMNKDDNRVY----KCTLCVDRVSVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 184 IHFGTKEAMKE 194


>gi|253701525|ref|YP_003022714.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776375|gb|ACT18956.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 452

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA--IKPDTEPGLEL 65
          CI C    C   CPVD     +     I   +CI C  C   CP  A  I    E     
Sbjct: 22 CIACGAR-CQSSCPVDGIQMNDAGEPQIELSKCIGCLKCVKACPGSALEIFYSKEE---- 76

Query: 66 WLKINSEYA 74
           L+I +  A
Sbjct: 77 -LEILAALA 84


>gi|169342408|ref|ZP_02863472.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299528|gb|EDS81592.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 273

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP +      N   I  ++C  CG+C  +CP  AI
Sbjct: 219 CIGCKL--CEKNCPSEAIRVENNLAIIDYEKCTSCGICVSKCPKKAI 263



 Score = 37.4 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 4   VVTENCILCKHTDCVEVCP---VDCFYEGENFLA----------IHPD---ECIDCGVCE 47
           V +  C+ CK   CV  CP   +D   E +  +           ++ +    CI C +CE
Sbjct: 169 VDSSKCVACK--ACVRACPQNLIDIIKEDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCE 226

Query: 48  PECPVDAIKPDTEPGLELWLK 68
             CP +AI+ +    +  + K
Sbjct: 227 KNCPSEAIRVENNLAIIDYEK 247



 Score = 35.9 bits (82), Expect = 2.0,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 15/41 (36%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
             C + C  +     +    +   +C+ C  C   CP + I
Sbjct: 149 GSCKDACKFEAISIIDGIAKVDSSKCVACKACVRACPQNLI 189


>gi|121533899|ref|ZP_01665725.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
 gi|121307410|gb|EAX48326.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
          Length = 306

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
            +V   NC  C    C  +C       G       P +C  CGVC   CP  AI    + 
Sbjct: 61  PHVDHTNCNGCG--ICTRLCRFGAITSGTLT---SPLDCEGCGVCAFNCPQHAIAMREKE 115

Query: 62  GLELWLK 68
               ++ 
Sbjct: 116 AGHWFIA 122


>gi|22213648|emb|CAC86938.1| sulfur reductase FeS subunit [Acidianus ambivalens]
          Length = 227

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 4   VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK---PD 58
            +   C+ C++  C  VCP       +G   + +   +C+ C  C   CP  A      D
Sbjct: 69  FIPRLCMQCENPPCYYVCPTGATQIVDGG-IVVVDEYKCMGCLYCVEACPYGARYFYTYD 127

Query: 59  TEPGLELWLKIN 70
                + +   N
Sbjct: 128 DIQKAKEYYGDN 139


>gi|73748696|ref|YP_307935.1| proton-translocating NADH-quinone oxidoreductase, I subunit
          [Dehalococcoides sp. CBDB1]
 gi|73660412|emb|CAI83019.1| proton-translocating NADH-quinone oxidoreductase, I subunit
          [Dehalococcoides sp. CBDB1]
          Length = 169

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 5  VTENCILCKHTDCVEVCPVDCFY----EGEN------FLAIHPDECIDCGVCEPECPV-D 53
          V E CI C    C   CPV         GE+       ++I    CI CG+C   CP  +
Sbjct: 36 VKETCIACL--ACARACPVKAINMEVSRGEDRKLKVDHMSIDFGLCIFCGLCVESCPTKN 93

Query: 54 AIK 56
          AI 
Sbjct: 94 AIY 96



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + CI C  C   CPV AI  +   G +  LK++
Sbjct: 37 KETCIACLACARACPVKAINMEVSRGEDRKLKVD 70


>gi|15922005|ref|NP_377674.1| hypothetical protein ST1701 [Sulfolobus tokodaii str. 7]
 gi|15622793|dbj|BAB66783.1| 646aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 646

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 10/53 (18%)

Query: 7   ENCILCKHTDCVEVCPV------DCFYEGENFLAIHPDECIDCGVCEPECPVD 53
           E C  C+   C   CPV      D   +G      +   C+ CG C   CP +
Sbjct: 579 ETCKSCEVKACDSSCPVKIPISQDVITKG----YSNRISCVGCGDCVEACPYN 627


>gi|16762397|ref|NP_458014.1| formate dehydrogenase-O subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143885|ref|NP_807227.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052176|ref|ZP_03345054.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213586799|ref|ZP_03368625.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647352|ref|ZP_03377405.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852523|ref|ZP_03382055.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828493|ref|ZP_06546347.1| formate dehydrogenase-O, iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25285341|pir||AC0946 formate dehydrogenase-O beta chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504701|emb|CAD09589.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139521|gb|AAO71087.1| formate dehydrogenase-O beta subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 300

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP +  + + E  
Sbjct: 98  DGCMHCADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDN 155



 Score = 40.9 bits (95), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 6   TENCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCG------VCEPECPVDAIKPD 58
           +E CI C +  C+  CP +      E+        C+DC        C   CP  AI   
Sbjct: 130 SEQCIGCGY--CIAGCPFNVPRLNPEDNRVYKCTLCVDCVVVGQEPACVKTCPTGAIHFG 187

Query: 59  TEPGLE 64
           ++  ++
Sbjct: 188 SKEDMK 193


>gi|238798337|ref|ZP_04641820.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia mollaretii
           ATCC 43969]
 gi|238717795|gb|EEQ09628.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia mollaretii
           ATCC 43969]
          Length = 323

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKEAMKE 196


>gi|324497291|gb|ADY39446.1| formate hydrogenlyase complex iron-sulfur subunit [bacterium
           enrichment culture clone P24-9H]
          Length = 180

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AI+   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLKTGELAWQFNLGRCIFCGRCEEVCPTVAIRLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|323698725|ref|ZP_08110637.1| iron-sulfur binding protein [Desulfovibrio sp. ND132]
 gi|323458657|gb|EGB14522.1| iron-sulfur binding protein [Desulfovibrio desulfuricans ND132]
          Length = 149

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDT 59
           NC  CK  +CV  CP    Y+ E+ L  +   +C  C  C   CP      + 
Sbjct: 59  NCRHCKKPECVAACPTGAMYKREDGLVLVDMAKCDGCKACIEACPWTVPVFND 111


>gi|310643155|ref|YP_003947913.1| molybdopterin oxidoreductase family protein [Paenibacillus polymyxa
           SC2]
 gi|309248105|gb|ADO57672.1| Molybdopterin oxidoreductase family protein [Paenibacillus polymyxa
           SC2]
          Length = 980

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEG--------------ENFLAIHPDECIDCGVCEPECPVDA 54
           CI C    CVEVC      E               +  +AI+   C+ CG C   CP +A
Sbjct: 151 CIACGQ--CVEVCQNLQVNETLSLDWEAERPRVIWDEGVAINDSSCVSCGQCVTVCPCNA 208

Query: 55  IKPDTEPGLELWLK-INSEY 73
           +   +  G   ++  IN + 
Sbjct: 209 LMEKSMLGEAGFMSGINKDL 228



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 18  VEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           V+   VD  +    F    P++CI CG C   C
Sbjct: 132 VDPTEVDMSHP---FYRYDPNQCIACGQCVEVC 161


>gi|297519905|ref|ZP_06938291.1| 4Fe-4S binding domain protein [Escherichia coli OP50]
          Length = 97

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%)

Query: 12 CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C+   C  VCPVD        + +    CI C  C   CP  A++
Sbjct: 1  CEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFGAME 45


>gi|291279484|ref|YP_003496319.1| hypothetical protein DEFDS_1094 [Deferribacter desulfuricans SSM1]
 gi|290754186|dbj|BAI80563.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 360

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFY-EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           +CI C    C + CPV+    + + F  ++ ++CI+C  C   C  DAI+
Sbjct: 301 DCIKCYL--CYKSCPVEAISLDNDKFPVVNKNDCIECYCCYEVCESDAIR 348



 Score = 35.5 bits (81), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTE 60
            I   +CI C +C   CPV+AI  D +
Sbjct: 296 EIMKSDCIKCYLCYKSCPVEAISLDND 322


>gi|326317529|ref|YP_004235201.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374365|gb|ADX46634.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 244

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           V+ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I  +
Sbjct: 88  VIDELACIGC--TLCIKACPTDAILGTHKRMHTVIEAHCTGCELCIPVCPVDCIAME 142



 Score = 40.5 bits (94), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 25  CFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           C  EG   L  I    CI C +C   CP DAI
Sbjct: 78  CGAEGPRGLAVIDELACIGCTLCIKACPTDAI 109


>gi|266625528|ref|ZP_06118463.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          hathewayi DSM 13479]
 gi|288862567|gb|EFC94865.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          hathewayi DSM 13479]
          Length = 276

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          C  C    CV+ CP          +    D+CI C  C   CP  A
Sbjct: 44 CTGCGV--CVDGCPAGALKLNGETVVWDEDKCISCDRCIAVCPSFA 87


>gi|256830046|ref|YP_003158774.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579222|gb|ACU90358.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
          Length = 290

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C  +C  D   E +   ++ P  C  C VC   CP  AI        + +
Sbjct: 66  EKCTGCGL--CASMCRYDAIDEKDGVFSVAPLRCEGCKVCVAFCPEQAIDFPARHCGQHY 123

Query: 67  L 67
           +
Sbjct: 124 M 124



 Score = 40.9 bits (95), Expect = 0.061,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 34 AIHPDECIDCGVCEPECPVDAI 55
           I P++C  CG+C   C  DAI
Sbjct: 62 VIDPEKCTGCGLCASMCRYDAI 83


>gi|254462535|ref|ZP_05075951.1| cytochrome c oxidase accessory protein CcoG [Rhodobacterales
           bacterium HTCC2083]
 gi|206679124|gb|EDZ43611.1| cytochrome c oxidase accessory protein CcoG [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           +CI C    C  VCPV     +G+        ECI C +C   C     K     GL  +
Sbjct: 258 DCIDC--MACANVCPVGIDIRDGQQM------ECITCALCIDACDDVMAKIGKPRGLIDY 309

Query: 67  LKINSEYATQ 76
           L ++ E A +
Sbjct: 310 LALSDEEAER 319


>gi|154502657|ref|ZP_02039717.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149]
 gi|210617393|ref|ZP_03291557.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787]
 gi|153796540|gb|EDN78960.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149]
 gi|210149323|gb|EEA80332.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787]
          Length = 295

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 7   ENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C+ C    C  VC +D    +  N    HP ECI CG C   CP DAI
Sbjct: 238 EKCVGC--QKCSRVCKMDVNVVDTPN----HP-ECIRCGECMKACPTDAI 280


>gi|145300175|ref|YP_001143016.1| ferredoxin [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852947|gb|ABO91268.1| ferredoxin [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 82

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M+ ++T+ CI C    C   CP      GE    I P+ C +C        C   CP+D 
Sbjct: 1  MSLLITDKCINCD--MCDPECPNQAISLGEEIYEIDPNRCTECVGHYEKPTCISVCPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIWD 62


>gi|330998773|ref|ZP_08322501.1| electron transport complex, RnfABCDGE type, B subunit
           [Parasutterella excrementihominis YIT 11859]
 gi|329576270|gb|EGG57786.1| electron transport complex, RnfABCDGE type, B subunit
           [Parasutterella excrementihominis YIT 11859]
          Length = 198

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP D        +  +  + C  C +C+  CPVD I
Sbjct: 82  CIGC--RLCSDACPTDAIIGSPKHMHCVDAERCNGCCLCQLACPVDCI 127



 Score = 41.3 bits (96), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
               I P++CI C +C   CP DAI
Sbjct: 72 PEIAEIDPNKCIGCRLCSDACPTDAI 97


>gi|312796893|ref|YP_004029815.1| NADH-quinone oxidoreductase chain I [Burkholderia rhizoxinica HKI
           454]
 gi|312168668|emb|CBW75671.1| NADH-quinone oxidoreductase chain I (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESEVRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|294495823|ref|YP_003542316.1| acetyl-CoA decarbonylase/synthase subunit alpha [Methanohalophilus
           mahii DSM 5219]
 gi|292666822|gb|ADE36671.1| acetyl-CoA decarbonylase/synthase alpha subunit [Methanohalophilus
           mahii DSM 5219]
          Length = 801

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 6   TENCILCKHTDCVEVCPV-----DCFYEGENF----LAIHPDECIDCGVCEPECP 51
           T  C+ C    C   CP      D     E        I  D+C+ CG CE  CP
Sbjct: 409 TSRCVHCL--ACELECPTNLPISDAMNAAEEGDLRPFEILHDKCVACGRCEQACP 461


>gi|258514867|ref|YP_003191089.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfotomaculum acetoxidans DSM 771]
 gi|257778572|gb|ACV62466.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfotomaculum acetoxidans DSM 771]
          Length = 61

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 4  VVTENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          V +E C+ C    C EVCP +   F   +    I+P+ C++CG CE  CP  +IK
Sbjct: 5  VNSETCVAC--ATCFEVCPAEPKVFEVTDYSKVINPEACLECGACEENCPTGSIK 57


>gi|253996935|ref|YP_003048999.1| ferredoxin-type protein, NapH/MauN family [Methylotenera mobilis
           JLW8]
 gi|253983614|gb|ACT48472.1| ferredoxin-type protein, NapH/MauN family [Methylotenera mobilis
           JLW8]
          Length = 286

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 1   MTYVVTENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPEC 50
           M  V T+ C  C  TDC++VCP   V      +  + +   +C  CG C  +C
Sbjct: 212 MA-VKTDACSGC--TDCIKVCPEPHVLAPLVAQKAVTVTDSDCTRCGACVDKC 261


>gi|258404378|ref|YP_003197120.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Desulfohalobium retbaense DSM 5692]
 gi|257796605|gb|ACV67542.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Desulfohalobium retbaense DSM 5692]
          Length = 62

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 1  MTYVVTENCILC-KHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPD 58
          M +VVT +   C   ++CV+VCPV+ F   +N    ++ +EC+ C  C   C  DAI  +
Sbjct: 1  MGFVVTVDAEKCTGDSECVDVCPVEVFEMQDNKAVPVNMEECLGCESCVEVCEADAITVE 60

Query: 59 TE 60
           E
Sbjct: 61 EE 62


>gi|224371989|ref|YP_002606155.1| PorA4 [Desulfobacterium autotrophicum HRM2]
 gi|223694708|gb|ACN17991.1| PorA4 [Desulfobacterium autotrophicum HRM2]
          Length = 1167

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 39/122 (31%), Gaps = 35/122 (28%)

Query: 5   VTENCILCKHTDCVEVCPVDCFY-------------------EGENF--------LAIHP 37
           + ENCI C    C  VCP                        EG+          + I+P
Sbjct: 683 IPENCIQCNQ--CSFVCPHAAIIPIVATEDELKNAPGTFETVEGKGKDLKDYKFRMQINP 740

Query: 38  DECIDCGVCEPECP--VDAIKPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
            +C  CG C   CP  V A+              N E++   P     KE+L     + G
Sbjct: 741 LDCQGCGNCADICPAKVKALVMKPLATQTEREIPNHEFSLTIP----FKEALGKRDSVKG 796

Query: 96  VK 97
            +
Sbjct: 797 SQ 798


>gi|148910189|gb|ABR18176.1| unknown [Picea sitchensis]
          Length = 605

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 12 CKHTDCVEVCPVDCFYEGENFL-----------AIHPDECIDCGVCEPECPVDAIK 56
          CK   C + C   C       L            I  + CI CG+C  +CP +AI+
Sbjct: 16 CKPKKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGICVKKCPFEAIQ 71


>gi|254443050|ref|ZP_05056526.1| cytochrome c oxidase accessory protein CcoG [Verrucomicrobiae
           bacterium DG1235]
 gi|198257358|gb|EDY81666.1| cytochrome c oxidase accessory protein CcoG [Verrucomicrobiae
           bacterium DG1235]
          Length = 475

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 9/48 (18%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           V   +CI C    CV+VCP      +G         ECI C  C   C
Sbjct: 262 VNAGDCIDCN--RCVQVCPTGIDIRQGLQM------ECIGCSACIDAC 301



 Score = 37.1 bits (85), Expect = 0.82,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 19/56 (33%)

Query: 17  CVEVCPVDCFYEG---ENFLAI----------------HPDECIDCGVCEPECPVD 53
           C+ +CP          E+ + I                +  +CIDC  C   CP  
Sbjct: 225 CIVICPYGRLQSALIDEHSMVIGYDEKRGEPRGKAKDVNAGDCIDCNRCVQVCPTG 280


>gi|110834472|ref|YP_693331.1| electron transport complex protein RnfC [Alcanivorax borkumensis
           SK2]
 gi|110647583|emb|CAL17059.1| electron transport complex protein rnfC [Alcanivorax borkumensis
           SK2]
          Length = 991

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 24/112 (21%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-------------ECIDCGVCEPECPVDAI 55
           CI C    C EVCP +        L  H               +CI+CG C   CP    
Sbjct: 398 CIRCG--SCAEVCPANLL---PQQLYWHAKNDDLEKAQHHNLMDCIECGACAYVCPSHIP 452

Query: 56  ------KPDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDGVKQKYE 101
                     E   +   ++ ++ A Q       +     A K    + + E
Sbjct: 453 LVQYYRYAKAEVRQQAADQLKADKARQRFEARQARIEHEQAEKEARRQARLE 504


>gi|238793195|ref|ZP_04636823.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia intermedia
           ATCC 29909]
 gi|238727568|gb|EEQ19094.1| Formate dehydrogenase, iron-sulfur subunit [Yersinia intermedia
           ATCC 29909]
          Length = 323

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 100 DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 157



 Score = 38.2 bits (88), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 132 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVGVGQEPACVKTCPTGA 185

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 186 IHFGTKESMKE 196


>gi|315186728|gb|EFU20486.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta
           thermophila DSM 6578]
          Length = 1195

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 31/93 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------------------EGENF------LAIHPDE 39
           + CI C    C  VCP                          +G++F      + I P++
Sbjct: 696 DVCIQCGD--CSAVCPHAVIRLKVYEEKHLEGAPAGFKFTDAKGKDFAGLKFTIQISPED 753

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLELWLKINSE 72
           C  CG C   CP  A K D +        IN E
Sbjct: 754 CTGCGACVNICP--AYKKDEQGNKTDRKAINME 784



 Score = 39.0 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 36  HPDECIDCGVCEPECPVDAIK 56
            PD CI CG C   CP   I+
Sbjct: 694 DPDVCIQCGDCSAVCPHAVIR 714


>gi|309792513|ref|ZP_07686977.1| hypothetical protein OSCT_2928 [Oscillochloris trichoides DG6]
 gi|308225501|gb|EFO79265.1| hypothetical protein OSCT_2928 [Oscillochloris trichoides DG6]
          Length = 386

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 15/65 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENF-------------LAIHPDECIDCGVCEPECPVD 53
           E C  C    C   CP +  +  +                 I  D C+ CG+C   CP D
Sbjct: 82  ELCTACYQ--CARACPPEVIHITQAKDPNTGKMVPASLEFIIEYDACMSCGLCAEACPFD 139

Query: 54  AIKPD 58
           AIK D
Sbjct: 140 AIKMD 144


>gi|284049133|ref|YP_003399472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953354|gb|ADB48157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 250

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           V  + C  C   +CV +CPV+  + GE +  +  D C+ C  C   CP  AI
Sbjct: 177 VDPDRCKKCG--ECVRLCPVENIHLGEKYAVMG-DHCLHCLACLHGCPHQAI 225



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 35  IHPDECIDCGVCEPECPVDAIK 56
           + PD C  CG C   CPV+ I 
Sbjct: 177 VDPDRCKKCGECVRLCPVENIH 198


>gi|291287698|ref|YP_003504514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884858|gb|ADD68558.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 187

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + +   C  C    CV VCP    ++ E+  + +    C+ C  C   CP DA   + + 
Sbjct: 54  HFLPNQCNHCDDAPCVTVCPTKASHKREDGVVYVTRSRCVGCKYCIVSCPYDARFFNHDL 113

Query: 62  G 62
           G
Sbjct: 114 G 114


>gi|208779427|ref|ZP_03246773.1| electron transport complex, rnfaBcdge type, b subunit family
           [Francisella novicida FTG]
 gi|208745227|gb|EDZ91525.1| electron transport complex, rnfaBcdge type, b subunit family
           [Francisella novicida FTG]
          Length = 209

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I        + 
Sbjct: 83  CIGCE--KCLLACPVDVIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQ 138


>gi|153955192|ref|YP_001395957.1| hypothetical protein CKL_2574 [Clostridium kluyveri DSM 555]
 gi|219855624|ref|YP_002472746.1| hypothetical protein CKR_2281 [Clostridium kluyveri NBRC 12016]
 gi|146348050|gb|EDK34586.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219569348|dbj|BAH07332.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 245

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           CI C    C  VCPV      +   A    +C+ C  C   CPV AI+ 
Sbjct: 185 CIGCG--KCAAVCPVSDIRMEKGRPAWQHKKCMQCCACINRCPVKAIQY 231



 Score = 37.8 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 35  IHPD-ECIDCGVCEPECPVDAIKPDT-EPGLEL 65
            H D +CI CG C   CPV  I+ +   P  + 
Sbjct: 179 FHADSKCIGCGKCAAVCPVSDIRMEKGRPAWQH 211


>gi|124485443|ref|YP_001030059.1| hypothetical protein Mlab_0618 [Methanocorpusculum labreanum Z]
 gi|124362984|gb|ABN06792.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 255

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLA---IHPDECIDCGVCEPECPVDAIKPDT 59
           + + ++C  C    CV VCP D     +  +    IH D C  C  C   CP  AIK  +
Sbjct: 175 FSINDDCSNCG--TCVRVCPRDNISLDKEQVNSKPIHGDTCEFCLSCINLCPKKAIKLKS 232

Query: 60  E 60
           E
Sbjct: 233 E 233


>gi|301023868|ref|ZP_07187600.1| formate dehydrogenase, beta subunit [Escherichia coli MS 69-1]
 gi|300396875|gb|EFJ80413.1| formate dehydrogenase, beta subunit [Escherichia coli MS 69-1]
          Length = 286

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 84  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 132


>gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
 gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
          Length = 862

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 12/56 (21%)

Query: 8   NCILCKHTDCVEVCPVDCF----------YEGENFLAIHPDECIDCGVCEPECPVD 53
            CI C    C E CPV              E +    ++  +CI+CG C   CP +
Sbjct: 377 ACIRCGQ--CAEACPVSLLPQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCPSE 430


>gi|283778897|ref|YP_003369652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283437350|gb|ADB15792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 718

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           V  +CI C    CV++CP D      +F     D C  C  C   CP +AIK 
Sbjct: 386 VESSCIHCN--KCVQICPFDAIK--PDFTTRTTD-CTLCQTCAGVCPTEAIKF 433



 Score = 41.3 bits (96), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 10/49 (20%)

Query: 17  CVEVCPVDC-------FYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           C  VCP          F   E  +      CI C  C   CP DAIKPD
Sbjct: 363 CKYVCPSGAVFSVSNLFRATERKVE---SSCIHCNKCVQICPFDAIKPD 408


>gi|260221063|emb|CBA29254.1| Nitrogen fixation protein fixG [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 496

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C+ C  + CV+VCP                ECI CG C   C     K     GL  + 
Sbjct: 290 ACVDC--SLCVQVCPTGIDIRKGLQY-----ECIGCGACADVCDTVMDKMGYARGLVKYS 342

Query: 68  KINSEYATQWPN 79
             N+  +  W N
Sbjct: 343 TQNA-LSQHWTN 353


>gi|27377878|ref|NP_769407.1| iron-sulfur cluster-binding protein [Bradyrhizobium japonicum USDA
           110]
 gi|1200217|emb|CAA64887.1| fixG [Bradyrhizobium japonicum]
 gi|3021318|emb|CAA06283.1| FixG protein [Bradyrhizobium japonicum]
 gi|27351024|dbj|BAC48032.1| iron-sulfur cluster-binding protein [Bradyrhizobium japonicum USDA
           110]
          Length = 488

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CV VCP       G         ECI CG+C   C
Sbjct: 274 DCVDCYQ--CVAVCPTGIDIRNGPQM------ECIQCGLCIDAC 309


>gi|116051508|ref|YP_789656.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586729|gb|ABJ12744.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 774

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------FYEGENFLAIHPD---ECIDCGVCEPECP 51
           V    CI C    C  VCPV         F  G+    +      +CI+CG C   CP
Sbjct: 364 VPAMPCIRCGD--CARVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|330828726|ref|YP_004391678.1| ferredoxin-like protein yfhL [Aeromonas veronii B565]
 gi|328803862|gb|AEB49061.1| ferredoxin-like protein yfhL [Aeromonas veronii B565]
          Length = 82

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M  ++T+ CI C    C   CP      GE    I P  C +C        C   CP+D 
Sbjct: 1  MALLITDKCINCD--MCDPECPNQAISLGEEIYEIDPSRCTECVGHYEKPTCISVCPIDC 58

Query: 55 IKPD 58
          I  D
Sbjct: 59 IIWD 62


>gi|327399969|ref|YP_004340808.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327315477|gb|AEA46093.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 144

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C    CV+VCP +         +  +  +CI CG C   C + AI 
Sbjct: 53  CRACIEPPCVQVCPTNALRPRKGGGVVYNEKDCIACGNCINACTIGAIF 101



 Score = 36.3 bits (83), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
           +CI C   +C+  C +   +   +     P  CI CG C   CP
Sbjct: 84  DCIACG--NCINACTIGAIFRRSDG---KPAVCIHCGYCANYCP 122


>gi|313109574|ref|ZP_07795526.1| putative iron-sulfur protein [Pseudomonas aeruginosa 39016]
 gi|310882028|gb|EFQ40622.1| putative iron-sulfur protein [Pseudomonas aeruginosa 39016]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP        + L I    CI C  C   C
Sbjct: 275 DCIDC--QQCVQVCPTGIDIR--DGLQI---ACIGCAACVDAC 310


>gi|295108848|emb|CBL22801.1| Uncharacterized Fe-S center protein [Ruminococcus obeum A2-162]
          Length = 374

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           E C  C    C + C  D          I  D+C  CG C   C  DA+        EL 
Sbjct: 195 EVCRGC--RRCAKECGSDAITYVNKKAVIDYDKCKGCGRCIGACSFDAVYNPNSSANELL 252

Query: 67  LKINSEYAT 75
            +  +EYA 
Sbjct: 253 DRKMAEYAQ 261


>gi|295106473|emb|CBL04016.1| Fe-S-cluster-containing hydrogenase components 1 [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 201

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           C  C +  C+ VCP     + E+ +  +  + CI C  C   CP + ++       E +L
Sbjct: 60  CQHCDNPSCLNVCPTGATQKREDGIVWVDNELCIGCESCIKACPYEGVRTLIANEPEYYL 119

Query: 68  KI 69
            +
Sbjct: 120 DV 121


>gi|265750369|ref|ZP_06086432.1| F420H2:quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
 gi|263237265|gb|EEZ22715.1| F420H2:quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
          Length = 411

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 21 CPVDCFY---EGENFLA--IHPDECIDCGVCEPECP 51
          CP  C     + E FL   +   +CIDCG+CE  CP
Sbjct: 4  CPRQCISLHEDTEGFLYPVVDKGDCIDCGLCEKVCP 39


>gi|150006536|ref|YP_001301280.1| hypothetical protein BVU_4056 [Bacteroides vulgatus ATCC 8482]
 gi|149934960|gb|ABR41658.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 255

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           TE CI CK   C +VCPV      +  +      C  C  C   CPV A++ 
Sbjct: 190 TEACIGCK--KCEKVCPVGNITVTDRPVW--GGNCTQCLACYHVCPVHAVEY 237



 Score = 35.1 bits (80), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 38  DECIDCGVCEPECPVDAIKPDTEPGL 63
           + CI C  CE  CPV  I     P  
Sbjct: 191 EACIGCKKCEKVCPVGNITVTDRPVW 216


>gi|13539178|emb|CAC35757.1| putative iron-sulfur protein (PscB) [Chlorobium limicola]
          Length = 226

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 3   YVVTENCILCKHTDCVEVCP--VDCFY--------EGENFLAIHPDECIDCGVCE--PEC 50
           +++   C+ C    C++ CP  ++           EG     I  D CI C  C    EC
Sbjct: 131 FIIENLCVGCGL--CLDKCPPKINAIGYKFYGDVQEGGFRCYIDQDACISCSACFSGDEC 188

Query: 51  PVDAIKPDTEPGL 63
           P  A+      G 
Sbjct: 189 PSGALIEVLPDGE 201


>gi|301027883|ref|ZP_07191183.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301647854|ref|ZP_07247638.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|312969696|ref|ZP_07783879.1| 4Fe-4S binding domain protein [Escherichia coli 1827-70]
 gi|299879014|gb|EFI87225.1| 4Fe-4S binding domain protein [Escherichia coli MS 196-1]
 gi|301074044|gb|EFK88850.1| 4Fe-4S binding domain protein [Escherichia coli MS 146-1]
 gi|310337981|gb|EFQ03070.1| 4Fe-4S binding domain protein [Escherichia coli 1827-70]
 gi|315618866|gb|EFU99449.1| 4Fe-4S binding domain protein [Escherichia coli 3431]
 gi|323163477|gb|EFZ49303.1| 4Fe-4S binding domain protein [Escherichia coli E128010]
          Length = 170

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 82  ADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACP 129


>gi|296387311|ref|ZP_06876810.1| iron-sulfur protein [Pseudomonas aeruginosa PAb1]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP        + L I    CI C  C   C
Sbjct: 275 DCIDC--QQCVQVCPTGIDIR--DGLQI---ACIGCAACVDAC 310


>gi|291522103|emb|CBK80396.1| electron transport complex, RnfABCDGE type, B subunit [Coprococcus
           catus GD/7]
          Length = 256

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           +CI C    CV+ C  D  +      AI  D+C +CG C   CP  AI
Sbjct: 210 SCIGC--MKCVKTCEHDAIHVTNFNAAIDYDKCTNCGACAEVCPKHAI 255



 Score = 44.4 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            H DC  VCP       +    I  D+C+ CG+C   CP   I
Sbjct: 139 GHGDCAAVCPEKAIIVHDGLAMIDQDKCVGCGICVKTCPKHVI 181


>gi|317128887|ref|YP_004095169.1| pyruvate/ketoisovalerate oxidoreductase, subunit gamma [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473835|gb|ADU30438.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 337

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLA--------IHPDECIDCGVCEPECPVDAI 55
           +  CI C    C  VCP  CF   EGE+           I    C  C  C   CP +A+
Sbjct: 253 SNTCIHC--AACDTVCPDYCFVWEEGEDKRGRKQMFLKGIDYQYCKGCLKCVDACPTEAL 310

Query: 56  KPDTEPGLELWLKINS 71
           +   E     + + N 
Sbjct: 311 QDMIEE--LGYAEENR 324


>gi|237653628|ref|YP_002889942.1| thiamine pyrophosphate protein domain protein TPP-binding [Thauera
           sp. MZ1T]
 gi|237624875|gb|ACR01565.1| thiamine pyrophosphate protein domain protein TPP-binding [Thauera
           sp. MZ1T]
          Length = 451

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDT 59
           C  C    CV VCP     +      I  D  +C+DC +C   C    I  D 
Sbjct: 63  CRQCADPKCVTVCPAGALGKNGATGVIDWDASKCVDCLLCTIGCTYAGIALDE 115


>gi|91782620|ref|YP_557826.1| NADH dehydrogenase subunit I [Burkholderia xenovorans LB400]
 gi|296160637|ref|ZP_06843452.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. Ch1-1]
 gi|115502523|sp|Q142G5|NUOI_BURXL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91686574|gb|ABE29774.1| NADH dehydrogenase subunit I [Burkholderia xenovorans LB400]
 gi|295889163|gb|EFG68966.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. Ch1-1]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|226942544|ref|YP_002797617.1| formate dehydrogenase subunit beta [Azotobacter vinelandii DJ]
 gi|226717471|gb|ACO76642.1| formate dehydrogenase, beta subunit [Azotobacter vinelandii DJ]
          Length = 297

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           + C+ C    C++ CP      +  N +     + CI CG C   CP +  +
Sbjct: 99  DGCMHCADPGCLKACPSPGAIVQYANGIVDFQSEHCIGCGYCVAGCPFNVPR 150



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  CV  CP +     + +N       +C  C           C   CP  A
Sbjct: 131 SEHCIGCGY--CVAGCPFNVPRLSQEDNKAY----KCTLCSDRVAVGQEPACAKTCPTGA 184

Query: 55  IKPDTEPGLEL 65
           I   T+  +  
Sbjct: 185 INFGTKADMRD 195


>gi|320353023|ref|YP_004194362.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121525|gb|ADW17071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfobulbus propionicus DSM 2032]
          Length = 786

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 8   NCILCKHTD-CVEVCPVDCFY-----EGENF----LAIHPDECIDCGVCEPECP 51
           +C  C+    C  +CP    Y      G +          D+CI CG C   CP
Sbjct: 724 SCGSCRDCHLCETICPTGAIYRREITPGPDGVDYEYVSDDDKCIACGFCADTCP 777



 Score = 34.7 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 40  CIDCGVCEPECPVDAIK 56
           C DC +CE  CP  AI 
Sbjct: 728 CRDCHLCETICPTGAIY 744


>gi|316964779|gb|EFV49731.1| putative ABC transporter, ATP-binding protein [Trichinella
          spiralis]
          Length = 575

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 4  VVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPVDA 54
          V  + C    C    C + CPV      C           I    CI CG+C  +CP DA
Sbjct: 21 VNNDRCKPKNCG-QVCKKSCPVVRMGKLCIEVTPSSKIAFISESLCIGCGICVKKCPYDA 79

Query: 55 I 55
          I
Sbjct: 80 I 80


>gi|301167468|emb|CBW27051.1| putative iron-sulfur binding protein [Bacteriovorax marinus SJ]
          Length = 130

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGE-----NFLAIHPDECIDCGVCEPEC 50
           V T +C  C    C+ VCP               L +   +CI CG+CE  C
Sbjct: 52  VNTNSCGTCSD--CISVCPTTALEATHKNDKLEHLFLDVRKCIFCGLCEEVC 101


>gi|213963674|ref|ZP_03391925.1| anaeroBic dimethyl sulfoxide reductase chain b [Capnocytophaga
           sputigena Capno]
 gi|213953669|gb|EEB65000.1| anaeroBic dimethyl sulfoxide reductase chain b [Capnocytophaga
           sputigena Capno]
          Length = 191

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD--ECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C  VCP D   + E  +    D  +CI C  C   CP    +   +
Sbjct: 60  CMHCDDPICANVCPADAIVKDEFGIVHSADVSKCIGCANCVLSCPFGVPQIPDQ 113


>gi|196233845|ref|ZP_03132683.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196222039|gb|EDY16571.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 233

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C+   C  VCP D   + ++ +     +  C+ C  C   CP    K   E  L
Sbjct: 57  CMHCEDPTCARVCPADAIKQDDHGIVHSAAKPRCVACSNCVIACPFGVPKMKVELDL 113


>gi|170290394|ref|YP_001737210.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174474|gb|ACB07527.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 153

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIK 56
           +C  C++  CV VC  D     E+  L I P +C  C  C   CP  AI+
Sbjct: 65  SCFHCENAPCVRVCKKDAIVRKEDGGLYIIPSKCNKCLDCINACPFKAIR 114


>gi|305665239|ref|YP_003861526.1| putative iron-sulfur cluster-binding protein [Maribacter sp.
           HTCC2170]
 gi|88709992|gb|EAR02224.1| putative iron-sulfur cluster-binding protein [Maribacter sp.
           HTCC2170]
          Length = 309

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 30/103 (29%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECI----------------------- 41
           VT++C  C  T C++ CP D   E      +   +CI                       
Sbjct: 181 VTDHCGSC--TACIDACPTDAIVE---PYVVDGSKCISYFTIELKNEIPAAFKGKFDDWM 235

Query: 42  -DCGVCEPECPVDAI-KPDTEPGLELWLKINSEYATQWPNITT 82
             C +C+  CP +   KP  EP  +   ++ S     W  IT 
Sbjct: 236 FGCDICQDVCPWNRFSKPHNEPLFDPHPELLSMTKKDWEEITE 278


>gi|332295738|ref|YP_004437661.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM
          14796]
 gi|332178841|gb|AEE14530.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM
          14796]
          Length = 504

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
          E CI C    CV+ C      + ++     IH ++C+ C  C   CP  AI+    PG +
Sbjct: 18 ELCIKCGQ--CVKNCGFSALMQDKDKNVKPIH-EKCVACQRCMYVCPTKAIQVINFPGTQ 74

Query: 65 LWLKINSEY 73
               N+EY
Sbjct: 75 K----NNEY 79


>gi|300245649|gb|ADJ93882.1| putative benzylsuccinate synthase BssD [Clostridia bacterium
          enrichment culture clone BF]
          Length = 312

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
          + C  C    C++VC      +    +      CI CG C   CP  A
Sbjct: 53 DKCTGCG--ACIQVCSNGACRQEGESIIFERSLCIKCGRCVEACPASA 98



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 21 CPVDCF-------YEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
          CP+ C         + E  + +  D+C  CG C   C   A + + E
Sbjct: 29 CPLRCPWCHNPDSQDPEKQILLDMDKCTGCGACIQVCSNGACRQEGE 75


>gi|294636318|ref|ZP_06714715.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685]
 gi|291090401|gb|EFE22962.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685]
          Length = 335

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 7   ENCILCKHTDCVEVCP---VDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
           E CI C    CV  C    VDC        +     CI CG C   CP  A     +P  
Sbjct: 178 ERCIGCG--ACVRACKHHAVDCLSLHNGKASKQESLCIGCGECVLACPTLA--WQRQPDQ 233

Query: 64  ELWLKINSEYATQWPNI 80
              +++    + + P +
Sbjct: 234 LYQVRLGGRTSKKTPRV 250



 Score = 36.7 bits (84), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           DC +    D    G   +   P+ CI CG C   C   A+
Sbjct: 156 DCAKATMADLGVLGIARIKFTPERCIGCGACVRACKHHAV 195


>gi|282849733|ref|ZP_06259117.1| 4Fe-4S binding domain protein [Veillonella parvula ATCC 17745]
 gi|294794400|ref|ZP_06759536.1| nitroreductase family protein [Veillonella sp. 3_1_44]
 gi|282580670|gb|EFB86069.1| 4Fe-4S binding domain protein [Veillonella parvula ATCC 17745]
 gi|294454730|gb|EFG23103.1| nitroreductase family protein [Veillonella sp. 3_1_44]
          Length = 271

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       +         CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRCGL--CVADCPTGLLVMSDAGPVTGRGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|254522096|ref|ZP_05134151.1| formate dehydrogenase, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219719687|gb|EED38212.1| formate dehydrogenase, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 304

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C++ CP      +  N +     + CI CG C   CP D  +
Sbjct: 98  EGCMHCSDPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPR 149



 Score = 37.1 bits (85), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 17/68 (25%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ENCI C +  CV  CP D     + ++       +C  C           C   CP  AI
Sbjct: 131 ENCIGCGY--CVTGCPFDVPRISKKDHKAY----KCTLCSDRVAVGQEPACVKTCPTGAI 184

Query: 56  KPDTEPGL 63
              ++  +
Sbjct: 185 TFGSKQAM 192


>gi|168235880|ref|ZP_02660938.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738376|ref|YP_002115801.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713878|gb|ACF93099.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290888|gb|EDY30242.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 180

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA------IHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +      +          +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLATNELAWQFNLSRCIFCGRCEEVCPTAAIKLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|157368334|ref|YP_001476323.1| formate dehydrogenase subunit beta [Serratia proteamaculans 568]
 gi|157320098|gb|ABV39195.1| formate dehydrogenase, beta subunit [Serratia proteamaculans 568]
          Length = 299

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNKDDN 155



 Score = 38.2 bits (88), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 20/78 (25%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDVPRMNKDDNRVY----KCTLCVDRVDVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLELWLKINSE 72
           I   T+  ++   +I +E
Sbjct: 184 IHFGTKDAMK---EIAAE 198


>gi|95928306|ref|ZP_01311054.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135577|gb|EAT17228.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 1190

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 37/112 (33%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE---------------------GENF------LAIHPDE 39
           + CI C    C  VCP                           G+        L + P++
Sbjct: 692 DLCIQCG--ICSFVCPHASIRMKAYDPAELDGAPETFKSVDAKGKEMAGMKFTLQVAPED 749

Query: 40  CIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWPNITTK 83
           C  CG C   CP          AI    +  L     +N E+    P+   K
Sbjct: 750 CTGCGACVHNCPAKSKEEEGKKAINMTFQAPLRDAEAVNWEFFLNLPDPDEK 801


>gi|152986699|ref|YP_001346346.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas aeruginosa
           PA7]
 gi|150961857|gb|ABR83882.1| cytochrome c oxidase accessory protein CcoG [Pseudomonas aeruginosa
           PA7]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP        + L I    CI C  C   C
Sbjct: 275 DCIDC--QQCVQVCPTGIDIR--DGLQI---ACIGCAACVDAC 310


>gi|30061066|gb|AAP19907.1| nitrite reductase [Haemophilus influenzae]
 gi|30061086|gb|AAP19917.1| nitrite reductase [Haemophilus influenzae]
          Length = 135

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 7  ENCILCKHTDCVEVCPVDC-FYEGENFLA-IHPDECIDCGVCEPECPV 52
          ++C  C +  CV VCP    F + E  +  +H D C+ C  C   CP 
Sbjct: 38 QSCQHCTNAPCVAVCPTGASFIDKETGIVDVHKDLCVGCQYCIAVCPY 85


>gi|150018466|ref|YP_001310720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904931|gb|ABR35764.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 252

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + V + C  CK   C +VCPV+        +      C  C  C   CP +AI+   E  
Sbjct: 178 FYVEDTCNSCKV--CEKVCPVNNINVDTKPVY--KGNCEQCLACINHCPQNAIRLKQEKS 233

Query: 63  LELWLKINSEY 73
              ++  N + 
Sbjct: 234 RARFINQNVKL 244


>gi|114048627|ref|YP_739177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890069|gb|ABI44120.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CVEVCP      +G  +      ECI+CG C   C
Sbjct: 275 DCVDCNL--CVEVCPTGIDIRQGLQY------ECINCGACVDAC 310


>gi|107103648|ref|ZP_01367566.1| hypothetical protein PaerPA_01004718 [Pseudomonas aeruginosa PACS2]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP        + L I    CI C  C   C
Sbjct: 275 DCIDC--QQCVQVCPTGIDIR--DGLQI---ACIGCAACVDAC 310


>gi|255526337|ref|ZP_05393252.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296187010|ref|ZP_06855410.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509985|gb|EET86310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
          carboxidivorans P7]
 gi|296048448|gb|EFG87882.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 327

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 17 CVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          C+EVC  +     E+ + I  ++C  CG+C+ +CP  A+  D
Sbjct: 36 CMEVCKYEAITSSEDEIKIDNEKCKKCGLCKAQCPSQAVTID 77



 Score = 37.1 bits (85), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 3   YVVTENCILCKHTDCVEVCPVDC--FYEGENFLAI--HPDECIDCGVCEPECPVDAIKPD 58
           + V  NC  C    C  +CP D     E E    I  +  +C  C +C   C  ++I+ +
Sbjct: 251 FKVKSNCDGCGL--CEGICPYDAWKITETEESFKIEYNCSKCRGCRLCIDLCSNNSIEEE 308


>gi|258404334|ref|YP_003197076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796561|gb|ACV67498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 660

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  CP     E     G     +    C  CG+C   CP  AI+
Sbjct: 584 CVGC--FKCVNTCPFGAIQESQDRGGNPKAEVIASVCQGCGICNVTCPQGAIQ 634



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV  E C  C    C+E CP     D F EG                    I  D C  
Sbjct: 235 TYVDWEKCTGCGL--CMEKCPSKKAYDYFNEGISTTTAINIPFPQATPKKATIDADYCRR 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP +AI  + +  
Sbjct: 293 FTKGKCGVCAKVCPTEAINFEMQDE 317


>gi|219853104|ref|YP_002467536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219547363|gb|ACL17813.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 424

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 20/77 (25%)

Query: 3   YVVTENCILCKHTDCVEVCPVDCFYE------------------GENFLAIHPDECIDCG 44
           ++  + C  C    C EVCPV+ +                      N +   PD CI+CG
Sbjct: 98  FIDPDLCNGCGD--CEEVCPVEVYNRFDAGIGVRKAIYKPHAQVVPNIMIKDPDHCIECG 155

Query: 45  VCEPECPVDAIKPDTEP 61
           +C   C  +A+  +  P
Sbjct: 156 LCYDICGRNAVLREQSP 172



 Score = 39.7 bits (92), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 34  AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQWPNITTKKE 85
            I PD C  CG CE  CPV+ +    + G+ +   I   +A   PNI  K  
Sbjct: 98  FIDPDLCNGCGDCEEVCPVE-VYNRFDAGIGVRKAIYKPHAQVVPNIMIKDP 148


>gi|159905236|ref|YP_001548898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanococcus maripaludis C6]
 gi|159886729|gb|ABX01666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanococcus maripaludis C6]
          Length = 58

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 1  MTYVVTEN-CILCKHTDCVEVCPVDCFYE-GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
          M Y V E+ CI C    CV  CP +   E  +    I P +C  CG C   CPV  IK +
Sbjct: 1  MAYKVNEDDCIACG--ACVPSCPENAISEKADGKAVIDPAKCTSCGDCADICPVACIKEE 58


>gi|94269861|ref|ZP_01291586.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93451045|gb|EAT02004.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 684

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAI 55
           C  CK   C  +CP       E      I+   C  CG C   CP+ AI
Sbjct: 619 CTGCK--ICRNICPYRAIGFDEEKQVAVINRVLCRGCGTCAAACPLTAI 665



 Score = 41.3 bits (96), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%)

Query: 3   YVVTENCILCKHTDCVEVCPVD-CFYEG--------------ENFLAIHPDECI------ 41
           +V    CI C   +C+E CP +    EG               N   I PD C+      
Sbjct: 239 FVDLGRCIGCG--ECIEACPAERAGVEGGKCKAIDFAVPGALPNVPKIDPDLCLRGGSDP 296

Query: 42  DCGVCEPECPVD 53
           +C +C+  CP+ 
Sbjct: 297 ECRLCQAACPMG 308


>gi|88603603|ref|YP_503781.1| thiamine pyrophosphate enzyme-like TPP-binding [Methanospirillum
           hungatei JF-1]
 gi|88189065|gb|ABD42062.1| thiamine pyrophosphate enzyme-like TPP-binding protein
           [Methanospirillum hungatei JF-1]
          Length = 589

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 7   ENCILCKHTDCVE-VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           + CI CK   C++  CP     E +  LA   D C  CGVC   CPV AI  + + 
Sbjct: 539 DRCIGCK--ACIKFGCPA---IELKGGLASITDLCSGCGVCVQICPVGAIGREVKE 589


>gi|86751413|ref|YP_487909.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
 gi|86574441|gb|ABD08998.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           HaA2]
          Length = 479

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 18/71 (25%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +C+ C    CV VCP      EG          C+ CG+C   C         P   I  
Sbjct: 263 DCVDC--HQCVNVCPTGVDIREGLQL------GCVQCGLCIDACTHVMQQVGRPTGLIAY 314

Query: 58  DTEPGLELWLK 68
           DT+   +  L+
Sbjct: 315 DTDINGQRRLE 325


>gi|11499420|ref|NP_070660.1| F420H2:quinone oxidoreductase, 39 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
 gi|2648713|gb|AAB89418.1| F420H2:quinone oxidoreductase, 39 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
          Length = 379

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIH-PD---ECIDCGVCEPECPVDAIKPDTEP--G 62
           C  C    C  +CPV+    G+    I  P+   EC+DCG C   CP    + +  P  G
Sbjct: 65  CCHC--AACASICPVNGITAGDAP--IDFPNWVKECVDCGACIKVCP----RWEYTPKNG 116

Query: 63  LELWLKINSEYATQW 77
           L  ++++ +  + ++
Sbjct: 117 LGEYIEVVAARSKRF 131



 Score = 34.0 bits (77), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKP-DTEPGLELWLK 68
           I    C  C  C   CPV+ I   D       W+K
Sbjct: 59 VIDAGLCCHCAACASICPVNGITAGDAPIDFPNWVK 94


>gi|89895694|ref|YP_519181.1| hypothetical protein DSY2948 [Desulfitobacterium hafniense Y51]
 gi|89335142|dbj|BAE84737.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C  VCP      +  E  L++    C  CG C   CP  A
Sbjct: 164 DQCIYCGL--CQAVCPAKAIEVHRQEETLSLDSQLCTYCGKCVKSCPTSA 211



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 38  DECIDCGVCEPECPVDAIK 56
           D+CI CG+C+  CP  AI+
Sbjct: 164 DQCIYCGLCQAVCPAKAIE 182


>gi|325265158|ref|ZP_08131884.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          sp. D5]
 gi|324029562|gb|EGB90851.1| putative pyruvate formate-lyase activating enzyme [Clostridium
          sp. D5]
          Length = 302

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 6  TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
          +E C+ C    CV+ CP                +C  CG+C   C
Sbjct: 50 SERCVGCG--SCVKACPNGAIKMEGQKAVTDRAKCTACGICTDYC 92



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPD 58
          L    + C+ CG C   CP  AIK +
Sbjct: 46 LLYDSERCVGCGSCVKACPNGAIKME 71


>gi|289191768|ref|YP_003457709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938218|gb|ADC68973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 405

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD-AIKPDTEPGLEL 65
           E C+ C   +C   CP++     E    I+   CI C  C   CP++ AI    E  L+ 
Sbjct: 126 EVCVRCG--NCERACPINVIERKEGKYVINMALCISCKECVKACPIENAIIIFDEKTLKE 183

Query: 66  WLK 68
            + 
Sbjct: 184 KID 186



 Score = 46.3 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 3   YVVTEN-CILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPDT 59
           YV+ E+ CI C    C +VC        +      I P+ C+  G C  ECPV+AIK   
Sbjct: 272 YVIDEDLCIGC--RICYKVCGAGAIKISKETKLPYIVPELCVRGGACARECPVEAIKIVK 329

Query: 60  EPGLEL 65
               E 
Sbjct: 330 PEEAEE 335



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 17/64 (26%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF---------------LAIHPDECIDCGVCEPECPV 52
           +CI C   +CVEVCP       ++                L I  + C+ CG CE  CP+
Sbjct: 83  SCIAC--ANCVEVCPTGVLEMDKHRIETEGLFFDKPKYHNLIIDEEVCVRCGNCERACPI 140

Query: 53  DAIK 56
           + I+
Sbjct: 141 NVIE 144



 Score = 38.2 bits (88), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE------GENFLAIHPDECIDCGVCEPECPVDAIKPD 58
           E CI C+   C E CP             +N        CI C  C   CP   ++ D
Sbjct: 47  EKCISCE--ACKESCPAFAVEMVYSEEYNKNLPVFDEGSCIACANCVEVCPTGVLEMD 102


>gi|270296779|ref|ZP_06202978.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272766|gb|EFA18629.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 498

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 5   VTENCI----LCKHTDCVEVCPVDCF---------YEGENFLAIHPDECIDCGVCEPECP 51
           V +NCI      +  +C   CP              +      I+ + CI CG CE  CP
Sbjct: 421 VKKNCIPLTDGVQCGNCARHCPTGAIQMVPSIPEDKDSPKIPVINVERCIGCGACENLCP 480

Query: 52  V---DAIKPD 58
                AI  +
Sbjct: 481 ARPFSAIYVE 490



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE-------C-IDCGVCEPECPVDAIKP 57
            ++C  C    CV  CP        +   +   E       C  +C  C   CP  AI+P
Sbjct: 347 AQHCTAC--QLCVSACPNQVLRPSADLRKLMQPEMSYERGYCRPECTKCSEVCPAGAIRP 404

Query: 58  DTEPG 62
            T+  
Sbjct: 405 ITKAD 409



 Score = 34.7 bits (79), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           +E C  C  + C   C   C    E+   I    C+ C  C  +C   AI     P
Sbjct: 224 SEKCNQC--SLCSRNCKAACINFKEHQ--IDASRCVVCMNCIEKCKHGAISYKYHP 275


>gi|153815520|ref|ZP_01968188.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756]
 gi|317502217|ref|ZP_07960391.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331088784|ref|ZP_08337694.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847162|gb|EDK24080.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756]
 gi|316896426|gb|EFV18523.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330407307|gb|EGG86810.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 864

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            +V  E C  C+     + CP+      +  + I  + C  CG C  +CP  
Sbjct: 714 PWVDLEKCRGCRICQVEKNCPIHAAKMVDGKIVIDENVCNHCGRCISKCPFG 765


>gi|126739533|ref|ZP_01755225.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Roseobacter sp.
           SK209-2-6]
 gi|126719179|gb|EBA15889.1| iron-sulfur-binding protein, RdxA/RdxB/FixG family [Roseobacter sp.
           SK209-2-6]
          Length = 446

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV VCPV         L     ECI C +C   C
Sbjct: 230 DCIDC--MACVNVCPVGIDIRDGQQL-----ECITCALCIDAC 265



 Score = 34.7 bits (79), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 40  CIDCGVCEPECPVDAIKPDTEPGLEL 65
           CIDC  C   CPV     D   G +L
Sbjct: 231 CIDCMACVNVCPVG---IDIRDGQQL 253


>gi|74316360|ref|YP_314100.1| iron-sulfur cluster-binding protein [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055855|gb|AAZ96295.1| iron-sulfur cluster-binding protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 478

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 16/65 (24%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +C+ C    CV+VCPV               +CI CG+C   C         P   I+ D
Sbjct: 268 DCVDCGL--CVQVCPVGIDIRDGLQY-----KCISCGLCIDACNTIMDSFSFPRGLIRYD 320

Query: 59  TEPGL 63
           +E  L
Sbjct: 321 SEKNL 325


>gi|28869202|ref|NP_791821.1| FixG-like protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213967521|ref|ZP_03395669.1| FixG-related protein [Pseudomonas syringae pv. tomato T1]
 gi|301386484|ref|ZP_07234902.1| FixG-related protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062816|ref|ZP_07254357.1| FixG-related protein [Pseudomonas syringae pv. tomato K40]
 gi|302131315|ref|ZP_07257305.1| FixG-related protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852442|gb|AAO55516.1| FixG-related protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213927822|gb|EEB61369.1| FixG-related protein [Pseudomonas syringae pv. tomato T1]
          Length = 470

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C  T CV+VCP          +     ECI C  C   C
Sbjct: 269 DCIDC--TLCVQVCPTGIDIRDGLQV-----ECIGCAACVDAC 304



 Score = 35.5 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF---YEGENFLAI--HPD--------------------ECIDCGVCEPECP 51
           C+ +CP   F      ++ L I   P                     +CIDC +C   CP
Sbjct: 222 CIYMCPYARFQSVMFDKDTLVISYDPRRGEPRGPRKKETDHQAQGLGDCIDCTLCVQVCP 281

Query: 52  VD 53
             
Sbjct: 282 TG 283


>gi|18310047|ref|NP_561981.1| ferredoxin [Clostridium perfringens str. 13]
 gi|18144726|dbj|BAB80771.1| ferredoxin-like protein [Clostridium perfringens str. 13]
          Length = 268

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           CI CK   C + CP        N   I  ++C  CG+C  +CP  AI
Sbjct: 219 CIGCKL--CEKNCPNGAIKVENNLAIIDYEKCTSCGLCVSKCPKKAI 263



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 18/76 (23%)

Query: 9   CILCKHTDCVEVCPVDCF--YEGENFLAIHPDE--------------CIDCGVCEPECPV 52
           C+ CK   C+ VCP +     + +  + ++ +               CI C +CE  CP 
Sbjct: 174 CVACK--ACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNCPN 231

Query: 53  DAIKPDTEPGLELWLK 68
            AIK +    +  + K
Sbjct: 232 GAIKVENNLAIIDYEK 247



 Score = 36.3 bits (83), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 14/40 (35%)

Query: 16  DCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
            C E C        +    I   +C+ C  C   CP + I
Sbjct: 150 SCKEACKFGAISIVDGIAKIDSSKCVACKACIRVCPQNLI 189


>gi|145218871|ref|YP_001129580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205035|gb|ABP36078.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Chlorobium phaeovibrioides DSM 265]
          Length = 252

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 5   VTENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           V   C  C    C   CP    +   + +  I    C+ C  C   CP  
Sbjct: 110 VPALCNHCAEPSCARACPTGSIFRRTDGIVAIDYHRCVGCRSCMQSCPYG 159


>gi|332982099|ref|YP_004463540.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mahella australiensis 50-1 BON]
 gi|332699777|gb|AEE96718.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Mahella australiensis 50-1 BON]
          Length = 59

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          M Y +  E+CI C    C   CP    +E ++ +  I PD+C +   C   CPVD I 
Sbjct: 1  MAYFIEAEDCIACG--ACEPECPEGAIHETDDGVYAIDPDKCTEDANCVEVCPVDCIH 56



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 33 LAIHPDECIDCGVCEPECPVDAIKPDTE 60
            I  ++CI CG CEPECP  AI    +
Sbjct: 3  YFIEAEDCIACGACEPECPEGAIHETDD 30


>gi|328860549|gb|EGG09655.1| hypothetical protein MELLADRAFT_29188 [Melampsora larici-populina
           98AG31]
          Length = 150

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  +CP            +G        +   +CI CG C+  CPVDAI
Sbjct: 60  ERCIACKL--CEAICPAQAITIESETRLDGARRTTRYDLDMTKCIYCGFCQEACPVDAI 116



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 60 ERCIACKLCEAICPAQAITIESE 82


>gi|313201664|ref|YP_004040322.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
          [Methylovorus sp. MP688]
 gi|312440980|gb|ADQ85086.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methylovorus sp. MP688]
          Length = 80

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 5  VTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDAIKPD 58
          +T+ CI C    C   CP     +G     I+P  C +C        C+  CPV  I  D
Sbjct: 2  ITDECINCDV--CEPACPNGAISQGAEIYVINPALCTECVGHFDKPQCQDVCPVSCIPLD 59

Query: 59 TE 60
           +
Sbjct: 60 PD 61


>gi|309355077|emb|CAP39440.2| CBR-ABCE-1 protein [Caenorhabditis briggsae AF16]
          Length = 612

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPVD-----CFY-EGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          + C    C    C + CPV+     C   E  + ++ I    CI CG+C  +CP DAIK
Sbjct: 25 DRCKPKNCG-LACKKACPVNRQGKMCIVVEATSTISTISEILCIGCGICVKKCPYDAIK 82


>gi|303257806|ref|ZP_07343816.1| electron transport complex protein RnfB [Burkholderiales bacterium
           1_1_47]
 gi|302859409|gb|EFL82490.1| electron transport complex protein RnfB [Burkholderiales bacterium
           1_1_47]
          Length = 198

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C    C + CP D        +  +  + C  C +C+  CPVD I
Sbjct: 82  CIGC--RLCSDACPTDAIIGSPKHMHCVDAERCNGCCLCQLACPVDCI 127



 Score = 41.3 bits (96), Expect = 0.048,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 30 ENFLAIHPDECIDCGVCEPECPVDAI 55
               I P++CI C +C   CP DAI
Sbjct: 72 PEIAEIDPNKCIGCRLCSDACPTDAI 97


>gi|296102260|ref|YP_003612406.1| formate dehydrogenase beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056719|gb|ADF61457.1| formate dehydrogenase beta subunit [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 294

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C+   C++ CP      +  N +     D CI CG C   CP +
Sbjct: 98  DGCMHCEDPGCLKACPSAGAIIQYANGIVDFQQDNCIGCGYCIAGCPFN 146


>gi|293393773|ref|ZP_06638080.1| formate dehydrogenase-O, beta subunit [Serratia odorifera DSM 4582]
 gi|291423600|gb|EFE96822.1| formate dehydrogenase-O, beta subunit [Serratia odorifera DSM 4582]
          Length = 299

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     + CI CG C   CP D  + + +  
Sbjct: 98  DGCMHCADPGCLKACPSEGAIIQYANGIVDFQSEHCIGCGYCIAGCPFDVPRMNEQDN 155



 Score = 39.4 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     E +N +     +C  C           C   CP  A
Sbjct: 130 SEHCIGCGY--CIAGCPFDVPRMNEQDNRVY----KCTLCVDRVDVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLEL 65
           I   T+  ++ 
Sbjct: 184 IHFGTKDAMKE 194


>gi|282165314|ref|YP_003357699.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
          paludicola SANAE]
 gi|282157628|dbj|BAI62716.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
          paludicola SANAE]
          Length = 147

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  CILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPV 52
          C  C+   C+  CP       E   F+ I    CI C  C   CP+
Sbjct: 52 CQHCRDPMCMAACPAGAIKKDEATGFVTIDKMLCIGCKACVWACPI 97


>gi|255994378|ref|ZP_05427513.1| electron transport complex, B subunit [Eubacterium saphenum ATCC
           49989]
 gi|255993091|gb|EEU03180.1| electron transport complex, B subunit [Eubacterium saphenum ATCC
           49989]
          Length = 271

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
            CI CK   CV  C  D  +  +    +  ++C++CG C   CP  A
Sbjct: 206 ACIGCK--KCVAACKFDAIHVNDFLAKVDYEKCVNCGACVKACPTKA 250



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 15  TDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECP 51
            DCV+ C  D  +  +    I  D+C+ CG C   CP
Sbjct: 137 ADCVKACEFDAIHIKDGVAVIDEDKCVACGQCAKACP 173


>gi|289578863|ref|YP_003477490.1| cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus
           Ab9]
 gi|297545078|ref|YP_003677380.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528576|gb|ADD02928.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus
           Ab9]
 gi|296842853|gb|ADH61369.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 291

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    C E+C             ++P  C  CG+C  +CPV+AIK   E
Sbjct: 66  DKCIECGL--CEELCRFGAISN----FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113



 Score = 44.8 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C   AI
Sbjct: 57 GKETAVIDKDKCIECGLCEELCRFGAI 83


>gi|282600463|ref|ZP_05974397.2| formate dehydrogenase, beta subunit [Providencia rustigianii DSM
           4541]
 gi|282565153|gb|EFB70688.1| formate dehydrogenase, beta subunit [Providencia rustigianii DSM
           4541]
          Length = 312

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP +    + +N +     + CI CG C   CP D  + + +  
Sbjct: 96  DGCMHCADPGCLKACPAEGAIVQYKNGIVDFQSEHCIGCGYCIAGCPFDVPRINKDDN 153



 Score = 38.2 bits (88), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 17/69 (24%)

Query: 6   TENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E+CI C +  C+  CP D     + +N       +C  C           C   CP  A
Sbjct: 128 SEHCIGCGY--CIAGCPFDVPRINKDDNRAY----KCTLCVDRVEVGQEPACVKTCPTGA 181

Query: 55  IKPDTEPGL 63
           I   ++  +
Sbjct: 182 IHFGSKEDM 190


>gi|218134954|ref|ZP_03463758.1| hypothetical protein BACPEC_02859 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990339|gb|EEC56350.1| hypothetical protein BACPEC_02859 [Bacteroides pectinophilus ATCC
           43243]
          Length = 322

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           V +  C+ C    C + C +D    +  +    HP ECI CG C   CP DAI 
Sbjct: 235 VDSSKCVGCGQ--CSKACKMDVDVCKTPD----HP-ECIRCGACIKACPKDAIY 281


>gi|145633521|ref|ZP_01789250.1| ferredoxin [Haemophilus influenzae 3655]
 gi|144985890|gb|EDJ92498.1| ferredoxin [Haemophilus influenzae 3655]
          Length = 86

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP-VD 53
          M  ++T  C  C    C+  CP +    G+    I P  C +C        C+  CP  +
Sbjct: 1  MALLITSKCTNCD--MCLPECPNEAISIGDEIYVIDPVLCTECVGHYDTPTCQKVCPITN 58

Query: 54 AIKPDTEPGL 63
           IKPD E   
Sbjct: 59 CIKPDPEHQE 68


>gi|160901866|ref|YP_001567447.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Petrotoga mobilis SJ95]
 gi|160359510|gb|ABX31124.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Petrotoga
           mobilis SJ95]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDAIKPD 58
            V   C+ C+   C EVCP     +      + ++ ++CI C  C   CP  +IK D
Sbjct: 47  FVPSVCLQCERAYCEEVCPTSALTKNPETGVVELNKEKCIGCKQCIVACPWGSIKLD 103


>gi|77917992|ref|YP_355807.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM
           2380]
 gi|77544075|gb|ABA87637.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 1194

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 37/112 (33%)

Query: 7   ENCILCKHTDCVEVCP---------------------VDCFYEGEN------FLAIHPDE 39
           E C+ C    C  VCP                       C  +G+        L + P++
Sbjct: 694 EVCVQCG--ICSFVCPHATIRMKVYAADQLSGAPATFKSCDAKGKELAGLKYTLQVAPED 751

Query: 40  CIDCGVCEPECPV--------DAIKPDTEPGLELWLKINSEYATQWPNITTK 83
           C  CG C   CP          AI    +P L      N ++  + PN   K
Sbjct: 752 CTGCGACVHNCPAKSKEDPTRKAINMAFQPPLRDQEAANWDFFLELPNPDEK 803


>gi|124266604|ref|YP_001020608.1| NADH dehydrogenase subunit I [Methylibium petroleiphilum PM1]
 gi|156633524|sp|A2SFN4|NUOI_METPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|124259379|gb|ABM94373.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
          Length = 165

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 64  ERCIACKL--CEAVCPALAITIESEVRDDGSRRTTRYDIDLTKCIFCGFCEESCPVDSI 120



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 64 ERCIACKLCEAVCPALAITIESE 86


>gi|313201818|ref|YP_004040476.1| cytochrome c oxidase accessory protein ccog [Methylovorus sp.
           MP688]
 gi|312441134|gb|ADQ85240.1| cytochrome c oxidase accessory protein CcoG [Methylovorus sp.
           MP688]
          Length = 489

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 16/65 (24%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV+VCP                +CI CG+C   C         P   I+ D
Sbjct: 283 DCIDCGF--CVQVCPTGIDIRNGLQY-----QCISCGLCIDACNNIMDSVGYPRGLIRYD 335

Query: 59  TEPGL 63
           +E  L
Sbjct: 336 SEKNL 340


>gi|289548732|ref|YP_003473720.1| formate dehydrogenase subunit beta [Thermocrinis albus DSM 14484]
 gi|289182349|gb|ADC89593.1| formate dehydrogenase, beta subunit [Thermocrinis albus DSM 14484]
          Length = 298

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 9   CILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTE 60
           C+ C    C++ CP      +  N +      +CI C  C   CP D  + D+ 
Sbjct: 106 CMHCGDPGCLKACPSPGAIVQYANGVVDFDHSKCIGCKFCLSGCPFDVPRYDSN 159


>gi|317153660|ref|YP_004121708.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943911|gb|ADU62962.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 775

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 8   NCILCKHTD-CVEVCPVDCFY----EGENFL-AIHPDECIDCGVCEPECP 51
           +C  C+    C  VCP         EG  F   +  D+CI CG C   CP
Sbjct: 713 SCGACRDCYLCETVCPQSAIRRVELEGGAFERVVDADKCIACGFCANCCP 762


>gi|253999844|ref|YP_003051907.1| cytochrome c oxidase accessory protein CcoG [Methylovorus sp.
           SIP3-4]
 gi|253986523|gb|ACT51380.1| cytochrome c oxidase accessory protein CcoG [Methylovorus sp.
           SIP3-4]
          Length = 474

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 16/65 (24%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV+VCP                +CI CG+C   C         P   I+ D
Sbjct: 268 DCIDCGF--CVQVCPTGIDIRNGLQY-----QCISCGLCIDACNNIMDSVGYPRGLIRYD 320

Query: 59  TEPGL 63
           +E  L
Sbjct: 321 SEKNL 325


>gi|212704179|ref|ZP_03312307.1| hypothetical protein DESPIG_02234 [Desulfovibrio piger ATCC 29098]
 gi|212672383|gb|EEB32866.1| hypothetical protein DESPIG_02234 [Desulfovibrio piger ATCC 29098]
          Length = 260

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           C  C +  CV VCP    Y+ E+  +A+    CI C  C   CP  A
Sbjct: 121 CNHCTNPPCVRVCPTQATYQMEDGIIAMDYHRCIGCRFCMAGCPFGA 167


>gi|152971579|ref|YP_001336688.1| formate hydrogenlyase complex iron-sulfur subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330008024|ref|ZP_08306140.1| 4Fe-4S binding domain protein [Klebsiella sp. MS 92-3]
 gi|150956428|gb|ABR78458.1| hydrogenase 4 Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328535255|gb|EGF61747.1| 4Fe-4S binding domain protein [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC----FYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          N LA   +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVEIDLATNQLAWQFNLGRCIFCGRCEEVCPTAAIKLSPE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTE 60
          P +CI C  C   CP +A+  + +
Sbjct: 37 PQQCIGCAACVNACPSNALTVEID 60


>gi|126465953|ref|YP_001041062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Staphylothermus marinus F1]
 gi|126014776|gb|ABN70154.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Staphylothermus marinus F1]
          Length = 178

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
           +C+ C    C+EVCP       E+  + +   +CI C  C   CP    + D + G
Sbjct: 60  SCLHCSRAPCIEVCPTGAMTRDESGAVYVEYMKCIGCMACLYACPFGIPELDPKVG 115


>gi|323187098|gb|EFZ72414.1| 4Fe-4S binding domain protein [Escherichia coli RN587/1]
          Length = 149

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 6   TENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECP 51
            + C  CK   C+ VCP+      + E  + +    CI C  C   CP
Sbjct: 61  ADTCRQCKEPQCMNVCPIGAITWQQREGCITVDHKRCIGCSACTTACP 108


>gi|302343657|ref|YP_003808186.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfarculus baarsii DSM 2075]
 gi|301640270|gb|ADK85592.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfarculus baarsii DSM 2075]
          Length = 680

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 10  ILC-KHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA 54
           + C     CV  CP      G N L  +    C  CG CE  CP+ A
Sbjct: 136 VGCLGLGTCVVNCPFGAIQIGANGLPQVDAALCTGCGTCERVCPMGA 182


>gi|301059378|ref|ZP_07200305.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446607|gb|EFK10445.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 169

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECP 51
           C  C    C   CPV+    G+     I  D+CI CG C   CP
Sbjct: 79  CQGC--MICARRCPVEAISGGKKQAHVIAQDKCIKCGTCLEACP 120


>gi|301062302|ref|ZP_07202968.1| pyridine nucleotide-disulfide oxidoreductase [delta proteobacterium
           NaphS2]
 gi|300443602|gb|EFK07701.1| pyridine nucleotide-disulfide oxidoreductase [delta proteobacterium
           NaphS2]
          Length = 722

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 14/70 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIH------------PDECIDCGVCEPECPVDA 54
           + CI C    CV++C      +   F  ++             + CI CG C   CP +A
Sbjct: 583 DVCIRCG--ACVDICRNKMGVDALQFGYLNFDHREPTDFRVTAERCILCGACAANCPTEA 640

Query: 55  IKPDTEPGLE 64
           I         
Sbjct: 641 ISMADVGEER 650


>gi|261856542|ref|YP_003263825.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus
           c2]
 gi|261837011|gb|ACX96778.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus
           c2]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY-------EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP            +G        I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESEQRADGTRRTTRYDIDLFKCIYCGFCEEACPVDSI 117



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLE 64
          + CI C +CE  CP  AI  ++E   +
Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRAD 87


>gi|218282846|ref|ZP_03488999.1| hypothetical protein EUBIFOR_01585 [Eubacterium biforme DSM 3989]
 gi|218216302|gb|EEC89840.1| hypothetical protein EUBIFOR_01585 [Eubacterium biforme DSM 3989]
          Length = 377

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFY--EGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
            +V  + C  CK   C++ C  D     E  + + I+   C+ CG C   C  DAI  + 
Sbjct: 191 PHVDEKLCRGCKQ--CLKECANDGLEYDETTHKMHINETNCVGCGRCLGACNFDAISFNN 248

Query: 60  EPGLELWLKINSEYAT 75
               EL   +N   A 
Sbjct: 249 YNANEL---LNKRMAE 261


>gi|193216242|ref|YP_001997441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chloroherpeton thalassium ATCC 35110]
 gi|193089719|gb|ACF14994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chloroherpeton thalassium ATCC 35110]
          Length = 98

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 23/79 (29%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYE---------------GENFLAIHPDECIDCG- 44
          M  ++TE CI C  + C+  CP    YE                +    I PD+C +C  
Sbjct: 1  MALMITEECINC--SACIPECPNTAIYEPGDPWELFGESYESLNDEITYIVPDKCTECVG 58

Query: 45 -----VCEPECPVDAIKPD 58
                C P CP D I PD
Sbjct: 59 HHEEPQCVPVCPSDCIVPD 77



 Score = 35.1 bits (80), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 38 DECIDCGVCEPECPVDAIKPDTEPGLELWLK 68
          +ECI+C  C PECP  AI    +P  EL+ +
Sbjct: 7  EECINCSACIPECPNTAIYEPGDP-WELFGE 36


>gi|167626176|ref|YP_001676470.1| cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           halifaxensis HAW-EB4]
 gi|167356198|gb|ABZ78811.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Shewanella
           halifaxensis HAW-EB4]
          Length = 473

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
           +CI C    CV+VCP                ECI+CG C   C     +   E GL  + 
Sbjct: 274 DCIDCDL--CVQVCPTGIDIRNGLQY-----ECINCGACIDACDTTMTRMGYEKGLISYT 326

Query: 68  KIN 70
             N
Sbjct: 327 TEN 329



 Score = 35.5 bits (81), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                      G       P       CIDC +C   CP
Sbjct: 227 CLHMCPYARFQSAMFDKNTYIVGYDAQRGEARGPRSRKADPKAMGLGDCIDCDLCVQVCP 286

Query: 52  VD 53
             
Sbjct: 287 TG 288


>gi|153006946|ref|YP_001381271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030519|gb|ABS28287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 179

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDA 54
           +E C  C H  CV  CP    +  +  +  +   +C  C  C   CP  A
Sbjct: 56  SERCNQCSHPSCVSACPTGASHVADGGVVGVARAKCTGCKACIASCPYGA 105


>gi|152605|gb|AAA26460.1| ferredoxin I [Rhodospirillum rubrum]
          Length = 61

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC-----GVCEPECPVDAI 55
          M   +T  CI C    C   CP +    G+    I P +C +C       C P CPV+ I
Sbjct: 1  MALKITNECISCG--ACEPECPNEAISVGDQTFTISPAKCTECEGFTVSQCVPVCPVECI 58


>gi|71906705|ref|YP_284292.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71846326|gb|AAZ45822.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 451

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 22/76 (28%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKPD 58
           +CI C    CV+VCP                +CI+CG+C   C         P   I+  
Sbjct: 247 DCIDCG--ICVQVCPTGIDIRDGLQY-----QCINCGLCVDACDEVMLKIGSPTGLIRFA 299

Query: 59  TE------PGLELWLK 68
           +E      P  + W +
Sbjct: 300 SERELAGRPKAQGWRE 315



 Score = 41.7 bits (97), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 17  CVEVCPVD-----CFYEGENFLAIHP--DECIDCGVCEPECPVD 53
           C  +CP        F E    ++      +CIDCG+C   CP  
Sbjct: 218 CQHMCPYSRFQGVMFDETTASVSYDQQRSDCIDCGICVQVCPTG 261


>gi|2935350|gb|AAD09156.1| regulatory protein NosR [Achromobacter cycloclastes]
          Length = 731

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 14/53 (26%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVC------EPECPV 52
              C       C   CPV   +       I+P+ECI+C  C      E  CPV
Sbjct: 660 GNPC-----QTCAHQCPVQAIHRTGE---INPNECINCLHCQVLYQSETVCPV 704


>gi|330808657|ref|YP_004353119.1| cytochrome c oxidase accessory protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376765|gb|AEA68115.1| Putative cytochrome c oxidase accessory protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 470

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP      +G         ECI C  C   C
Sbjct: 268 DCIDC--QMCVQVCPTGIDIRDGLQM------ECIGCAACIDAC 303



 Score = 36.7 bits (84), Expect = 1.00,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPD-----ECIDCGVCEPECP 51
           C+ +CP   F                      G      +P      +CIDC +C   CP
Sbjct: 221 CMHMCPYARFQSVMFDKDTLTISYDAARGEIRGPRKREANPANIGLGDCIDCQMCVQVCP 280

Query: 52  VD 53
             
Sbjct: 281 TG 282


>gi|320100610|ref|YP_004176202.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752962|gb|ADV64720.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 625

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 2   TYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP 57
            Y V    C  C        CP    +  E    I  ++C  CG+C   C  +AIKP
Sbjct: 566 PYTVDPGKCTGCGACIAATGCP--AIFLSEGKAVIAVEDCTGCGLCARYCGFNAIKP 620


>gi|295087952|emb|CBK69475.1| 4Fe-4S binding domain. [Bacteroides xylanisolvens XB1A]
          Length = 319

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+  L     +CI C  C   C   A   DT 
Sbjct: 252 CTHCGL--CVVRCPAGAITKGDE-LHTDEAKCIKCCACVKACVKKARVYDTP 300



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             + C  CG+C   CP  AI    E
Sbjct: 248 DENLCTHCGLCVVRCPAGAITKGDE 272


>gi|262043974|ref|ZP_06017058.1| formate hydrogenlyase subunit 6 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038700|gb|EEW39887.1| formate hydrogenlyase subunit 6 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 180

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDC----FYEGENFLA--IHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          N LA   +   CI CG CE  CP  AIK   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVEIDLATNQLAWQFNLGRCIFCGRCEEVCPTAAIKLSPE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 33.6 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 37 PDECIDCGVCEPECPVDAIKPDTE 60
          P +CI C  C   CP +A+  + +
Sbjct: 37 PQQCIGCAACVNACPSNALTVEID 60


>gi|241668346|ref|ZP_04755924.1| iron-sulfur cluster-binding protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876879|ref|ZP_05249589.1| iron-sulfur cluster-binding protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842900|gb|EET21314.1| iron-sulfur cluster-binding protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 211

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA-IHPDECIDCGVCEPECPVDAI 55
           CI C+   C+  CPVD     +  +  I   EC  C +C   CP+D I
Sbjct: 83  CIGCE--KCLLACPVDAIVGSKKLMHTIIESECTGCELCIEPCPMDCI 128



 Score = 35.1 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 35 IHPDECIDCGVCEPECPVDAI 55
          I    CI C  C   CPVDAI
Sbjct: 78 IDESMCIGCEKCLLACPVDAI 98


>gi|237712940|ref|ZP_04543421.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237723187|ref|ZP_04553668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262409617|ref|ZP_06086157.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298484344|ref|ZP_07002505.1| ferredoxin [Bacteroides sp. D22]
 gi|229447059|gb|EEO52850.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229447709|gb|EEO53500.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262352470|gb|EEZ01570.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|298269498|gb|EFI11098.1| ferredoxin [Bacteroides sp. D22]
          Length = 319

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           C  C    CV  CP     +G+  L     +CI C  C   C   A   DT 
Sbjct: 252 CTHCGL--CVVRCPAGAITKGDE-LHTDEAKCIKCCACVKACVKKARVYDTP 300



 Score = 34.4 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTE 60
             + C  CG+C   CP  AI    E
Sbjct: 248 DENLCTHCGLCVVRCPAGAITKGDE 272


>gi|258406435|ref|YP_003199177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257798662|gb|ACV69599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 660

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 9   CILCKHTDCVEVCPVDCFYE-----GENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    CV  CP     E     G     +    C  CG+C   CP  AI+
Sbjct: 584 CVGC--FKCVNTCPFGAIQESQDRGGNPKAEVIASVCQGCGICNVTCPQGAIQ 634



 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 26/85 (30%)

Query: 2   TYVVTENCILCKHTDCVEVCP----VDCFYEG---------------ENFLAIHPDECID 42
           TYV  E C  C    C+E CP     D F EG                    I  D C  
Sbjct: 235 TYVDWEKCTGCGL--CMEKCPSKKAYDYFNEGISTTTAINIPFPQATPKKATIDADYCRR 292

Query: 43  -----CGVCEPECPVDAIKPDTEPG 62
                CGVC   CP +AI  + +  
Sbjct: 293 FTKGKCGVCAKVCPTEAINFEMQDE 317


>gi|73667823|ref|YP_303838.1| hypothetical protein Mbar_A0274 [Methanosarcina barkeri str.
          Fusaro]
 gi|72394985|gb|AAZ69258.1| conserved hypothetical protein [Methanosarcina barkeri str.
          Fusaro]
          Length = 61

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 3  YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
          YVV   C  C    C +VCPVD  YE      I  D+C  C  C   C   AI
Sbjct: 7  YVVVFGCKRCG--KCKDVCPVDAIYEENELSKIDQDKCTRCMKCIDVCTNKAI 57


>gi|11498555|ref|NP_069783.1| carbon monoxide dehydrogenase, iron sulfur subunit (cooF)
           [Archaeoglobus fulgidus DSM 4304]
 gi|2649645|gb|AAB90290.1| carbon monoxide dehydrogenase, iron sulfur subunit (cooF)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 157

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAIKPDTE 60
           C  C+   CV  C     Y+ ++ + IH + +C+ C  C   CP  AI+ + E
Sbjct: 68  CRHCEEPKCVAACIAGALYKDDDGIVIHDESKCVACYSCIMACPYGAIRINIE 120


>gi|50288565|ref|XP_446712.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526020|emb|CAG59639.1| unnamed protein product [Candida glabrata]
          Length = 607

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 2  TYVVTENCI--LCKHTDCVEVCPVD-----CFYEGE--NFLAIHPDECIDCGVCEPECPV 52
            V  + C    C+  +C   CPV      C           I    CI CG+C  +CP 
Sbjct: 9  AVVNADRCKPKKCR-QECKRSCPVVKTGKLCIEVTPTSKIAFISEVLCIGCGICVKKCPF 67

Query: 53 DAI 55
          DAI
Sbjct: 68 DAI 70


>gi|268576198|ref|XP_002643079.1| C. briggsae CBR-ABCE-1 protein [Caenorhabditis briggsae]
          Length = 610

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 7  ENCI--LCKHTDCVEVCPVD-----CFY-EGENFLA-IHPDECIDCGVCEPECPVDAIK 56
          + C    C    C + CPV+     C   E  + ++ I    CI CG+C  +CP DAIK
Sbjct: 25 DRCKPKNCG-LACKKACPVNRQGKMCIVVEATSTISTISEILCIGCGICVKKCPYDAIK 82


>gi|163848448|ref|YP_001636492.1| NADH-quinone oxidoreductase subunit I [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526376|ref|YP_002570847.1| NADH-quinone oxidoreductase subunit I [Chloroflexus sp. Y-400-fl]
 gi|163669737|gb|ABY36103.1| NADH-quinone oxidoreductase, chain I [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450255|gb|ACM54521.1| NADH-quinone oxidoreductase, chain I [Chloroflexus sp. Y-400-fl]
          Length = 165

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 22  PVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINSEYATQ-- 76
           P +    GE +     I+   CI CG CE  CP +AI  + +  L  + +  + Y  +  
Sbjct: 76  PQNPRSPGERYAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYELSFYDRRAAIYTKEML 135

Query: 77  -WPNITTKKESLPSAAKMDGVK 97
             P      +  P  A+++   
Sbjct: 136 LVPPDKGHGDPPPILAQLNRQP 157


>gi|318605660|emb|CBY27158.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 618

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 18/60 (30%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGENFL------AIHPDECIDCGVCEPECPVD 53
           ++CI C    CV+ CP          F  GE               CI+CG C   CP +
Sbjct: 375 QSCIRCGL--CVDACPAGLLPQQLYWFSRGEEHEKARNHNIFD---CIECGACAYVCPSN 429



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            K ++C+         E E  L+     CI CG+C   CP  
Sbjct: 354 VKISNCIL-----APTEAEMGLSEPEQSCIRCGLCVDACPAG 390


>gi|307267360|ref|ZP_07548855.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917618|gb|EFN47897.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 291

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 14/113 (12%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKP-DTEPGLEL 65
           + CI C    C E+C  D          ++P  C  CG+C  +CPV+AIK  + + G  +
Sbjct: 66  DKCIECGL--CEELCRFDAISN----FEVYPYYCEGCGLCMYKCPVEAIKLVEEKTGHVI 119

Query: 66  WLKINSE----YATQWPNITTKKESLPS-AAKMDGVKQKYEKYF--SPNPGGK 111
           + K  SE    YA  +P      + +     K   V    ++Y      PG  
Sbjct: 120 YAKTKSEEKVVYAELFPGADGSGKLVTEVRKKAKEVSDDNDEYLIIDGTPGIG 172



 Score = 43.2 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAI 55
          G+    I  D+CI+CG+CE  C  DAI
Sbjct: 57 GKETAVIDRDKCIECGLCEELCRFDAI 83


>gi|299483514|gb|ADJ19595.1| putative Fe-S-cluster-containing hydrogenase component [Treponema
           primitia ZAS-2]
          Length = 172

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C++  C   C     Y  +N + +   +CI C  C   CP  A++      ++ 
Sbjct: 59  CRHCENPACKASCTSGAIYVRDNVVLVDTKKCIGCKNCVIACPFGAVEIVETAEVQH 115


>gi|295798108|emb|CAX68929.1| NADH dehydrogenase I, I subunit (23 kDa) [uncultured bacterium]
          Length = 178

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 21/94 (22%)

Query: 9   CILCKHTDCVEVCPVDCFY------------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C+ C    C  VCP  C Y            +      I   +C+ CG C   CP DAI+
Sbjct: 87  CVAC--MMCETVCPARCIYIVAEEHPDPNIEKRPKSFDIDLGKCVYCGFCVEVCPEDAIR 144

Query: 57  PDT-------EPGLELWLKINSEYATQWPNITTK 83
            DT       +   +L L I        P IT K
Sbjct: 145 MDTKIVAISSDTREDLMLDITKLLNPHGPKITQK 178


>gi|194367034|ref|YP_002029644.1| formate dehydrogenase subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194349838|gb|ACF52961.1| formate dehydrogenase, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 305

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7   ENCILCKHTDCVEVCP-VDCFYEGENFLA-IHPDECIDCGVCEPECPVDAIK 56
           E C+ C    C++ CP      +  N +     + CI CG C   CP D  +
Sbjct: 98  EGCMHCADPGCLKACPSPGAIIQYANGIVDFQEENCIGCGYCVTGCPFDVPR 149



 Score = 36.7 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 17/68 (25%)

Query: 7   ENCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCG---------VCEPECPVDAI 55
           ENCI C +  CV  CP D     + ++       +C  C           C   CP  AI
Sbjct: 131 ENCIGCGY--CVTGCPFDVPRISKKDHKAY----KCTLCSDRVAVGQEPACVKTCPTGAI 184

Query: 56  KPDTEPGL 63
              ++  +
Sbjct: 185 TFGSKQAM 192


>gi|299483516|gb|ADJ19597.1| putative Fe-S-cluster-containing hydrogenase component [Treponema
           primitia ZAS-2]
          Length = 181

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           C  C++  C++ C        +  + ++  +CI C  C   CP  AI+
Sbjct: 63  CHHCENAPCLQSCLPGALERKDGSVVVNGKKCIGCRNCALACPFGAIQ 110


>gi|295097301|emb|CBK86391.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 180

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 7   ENCILCKHTDCVEVCPVDCFY------EGENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60
           + CI C    CV  CP +          GE     +   CI CG CE  CP  AI+   E
Sbjct: 38  QQCIGC--AACVNACPSNALTVETDLKTGELAWQFNLGRCIFCGRCEEVCPTVAIRLSQE 95

Query: 61  PGLELWLK 68
             L +W K
Sbjct: 96  YELAVWKK 103



 Score = 36.3 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 36 HPDECIDCGVCEPECPVDAIKPDTE 60
          +P +CI C  C   CP +A+  +T+
Sbjct: 36 NPQQCIGCAACVNACPSNALTVETD 60


>gi|295092325|emb|CBK78432.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           cf. saccharolyticum K10]
          Length = 263

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C + C  D  +   N   I  ++C +CG C  +CPV  IK
Sbjct: 218 CIGC--TLCTKQCEFDAIHMDNNVAVIDYEKCTNCGKCAEKCPVKVIK 263



 Score = 44.0 bits (103), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
               CV+ C  D  +  +    +  ++C+ CG C   CP   I+
Sbjct: 146 GFGSCVKACKFDAIHVVDGIAVVDKEKCVACGQCVAACPQHLIE 189


>gi|297569257|ref|YP_003690601.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfurivibrio alkaliphilus AHT2]
 gi|296925172|gb|ADH85982.1| Electron transfer flavoprotein alpha/beta-subunit
          [Desulfurivibrio alkaliphilus AHT2]
          Length = 402

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA-----I 55
          M  +  E CI C    C + C      + E+ LA+  D C  CG C   C V A      
Sbjct: 1  MLKIDAEACIGCGL--CEDACTFGAI-QVEDGLAVVGDNCTLCGACVEVCEVGALSIPRP 57

Query: 56 KPDTEPGLELW 66
          + D    L  W
Sbjct: 58 EGDLPADLASW 68


>gi|242279981|ref|YP_002992110.1| cobyrinic acid ac-diamide synthase [Desulfovibrio salexigens DSM
           2638]
 gi|242122875|gb|ACS80571.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio salexigens DSM
           2638]
          Length = 285

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C E C  D   +     A+ P++C  CGVC   CPV+A+
Sbjct: 66  ELCTQCGL--CAEHCKFDAISKD---FAVMPEKCEGCGVCSYVCPVEAV 109



 Score = 37.1 bits (85), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 34 AIHPDECIDCGVCEPECPVDAIKPD 58
           I+P+ C  CG+C   C  DAI  D
Sbjct: 62 EINPELCTQCGLCAEHCKFDAISKD 86


>gi|187923348|ref|YP_001894990.1| NADH dehydrogenase subunit I [Burkholderia phytofirmans PsJN]
 gi|187714542|gb|ACD15766.1| NADH-quinone oxidoreductase, chain I [Burkholderia phytofirmans
           PsJN]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETRADNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|107103021|ref|ZP_01366939.1| hypothetical protein PaerPA_01004090 [Pseudomonas aeruginosa PACS2]
          Length = 774

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 4   VVTENCILCKHTDCVEVCPVDC-------FYEGENFLAIHPD---ECIDCGVCEPECP 51
           V    CI C    C +VCPV         F  G+    +      +CI+CG C   CP
Sbjct: 364 VPAMPCIRCGD--CAQVCPVSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|83591663|ref|YP_425415.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574577|gb|ABC21128.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 176

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDA 54
           C  C    C+  CP        + + ++   C+ C  C   CP  A
Sbjct: 59  CHHCDDAPCLNACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFGA 104


>gi|57641250|ref|YP_183728.1| hypothetical protein TK1315 [Thermococcus kodakarensis KOD1]
 gi|57159574|dbj|BAD85504.1| 3'-phosphoadenosine 5'-phosphosulfate reductase, fused to
           RNA-binding PUA and 4Fe-4S binding domains [Thermococcus
           kodakarensis KOD1]
          Length = 631

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 8   NCILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGL 63
            C  C    CV  CP +     E    + +  D C+ C  C   CP+  IK   E   
Sbjct: 575 ECFGCGF--CVGKCPENALSIDERSKKIVVDWDSCVHCRECMDVCPLLKIKNPEEGSQ 630


>gi|16272471|ref|NP_438685.1| ferredoxin [Haemophilus influenzae Rd KW20]
 gi|145628910|ref|ZP_01784710.1| ferredoxin [Haemophilus influenzae 22.1-21]
 gi|145637433|ref|ZP_01793092.1| ferredoxin [Haemophilus influenzae PittHH]
 gi|145638558|ref|ZP_01794167.1| ferredoxin [Haemophilus influenzae PittII]
 gi|148827718|ref|YP_001292471.1| ferredoxin [Haemophilus influenzae PittGG]
 gi|260580974|ref|ZP_05848797.1| ferredoxin [Haemophilus influenzae RdAW]
 gi|260582769|ref|ZP_05850556.1| ferredoxin [Haemophilus influenzae NT127]
 gi|319897959|ref|YP_004136156.1| ferredoxin-like protein [Haemophilus influenzae F3031]
 gi|329122405|ref|ZP_08250992.1| ferredoxin [Haemophilus aegyptius ATCC 11116]
 gi|1723604|sp|P44746|Y527_HAEIN RecName: Full=Uncharacterized ferredoxin-like protein HI_0527
 gi|1573511|gb|AAC22184.1| ferredoxin (fdx-2) [Haemophilus influenzae Rd KW20]
 gi|144979380|gb|EDJ89066.1| ferredoxin [Haemophilus influenzae 22.1-21]
 gi|145269379|gb|EDK09323.1| ferredoxin [Haemophilus influenzae PittHH]
 gi|145272153|gb|EDK12061.1| ferredoxin [Haemophilus influenzae PittII]
 gi|148718960|gb|ABR00088.1| ferredoxin [Haemophilus influenzae PittGG]
 gi|260092333|gb|EEW76273.1| ferredoxin [Haemophilus influenzae RdAW]
 gi|260094219|gb|EEW78120.1| ferredoxin [Haemophilus influenzae NT127]
 gi|301169242|emb|CBW28839.1| predicted 4Fe-4S cluster-containing protein [Haemophilus
          influenzae 10810]
 gi|309750062|gb|ADO80046.1| Putative 4Fe-4S ferredoxin-type protein [Haemophilus influenzae
          R2866]
 gi|317433465|emb|CBY81848.1| putative ferredoxin-like protein [Haemophilus influenzae F3031]
 gi|327473687|gb|EGF19106.1| ferredoxin [Haemophilus aegyptius ATCC 11116]
          Length = 86

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECP-VD 53
          M  ++T  C  C    C+  CP +    G+    I P  C +C        C+  CP  +
Sbjct: 1  MALLITSKCTNCD--MCLPECPNEAISIGDEIYVIDPILCTECVGHYDTPTCQKVCPITN 58

Query: 54 AIKPDTEPGL 63
           IKPD E   
Sbjct: 59 CIKPDPEHQE 68


>gi|317471179|ref|ZP_07930550.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901394|gb|EFV23337.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 276

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWL 67
            C  C    C +VCP+      +         CI CG C  +CP  A   + E  L    
Sbjct: 205 ECDGCG--ICAKVCPMGSIRREDVGTV--DGICIKCGACIKKCPKHAKYYEDEGYLYHKT 260

Query: 68  KINSEY 73
           ++  +Y
Sbjct: 261 ELEEQY 266


>gi|294339686|emb|CAZ88046.1| putative ferredoxin [Thiomonas sp. 3As]
          Length = 472

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C  + CV+VCP      +G  ++      CI CG C   C
Sbjct: 266 DCVDC--SICVQVCPTGIDIRDGLQYM------CIGCGACVDAC 301


>gi|296135556|ref|YP_003642798.1| cytochrome c oxidase accessory protein CcoG [Thiomonas intermedia
           K12]
 gi|295795678|gb|ADG30468.1| cytochrome c oxidase accessory protein CcoG [Thiomonas intermedia
           K12]
          Length = 472

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C  + CV+VCP      +G  ++      CI CG C   C
Sbjct: 266 DCVDC--SICVQVCPTGIDIRDGLQYM------CIGCGACVDAC 301


>gi|261402918|ref|YP_003247142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
 gi|261369911|gb|ACX72660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Methanocaldococcus vulcanius M7]
          Length = 356

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 13/59 (22%)

Query: 7  ENCILCKHTDCVEVCPVDCFYEGE-----------NFLAIHPDECIDCGVCEPECPVDA 54
          E C+ C    C ++CPV+    G              L I  ++C+ CG+C   CP +A
Sbjct: 31 EPCVGCG--ICADICPVEAIAMGPLGAIAKGDIIAPKLDIDEEKCVLCGMCASACPFNA 87



 Score = 41.3 bits (96), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 21/87 (24%)

Query: 4   VVTENCILCKHTDCVEVCPVDCF-------------------YEGENFLAIHPDECIDCG 44
           V ++ C+ CK   C  VCP +                      +      +  D C+ CG
Sbjct: 191 VNSDKCVYCKV--CEFVCPHNAIEVICYKCPMMKRIPKAELYKDINGKTVVDKDACVTCG 248

Query: 45  VCEPECPVDAIKPDTEPGLELWLKINS 71
            C   CP +AI+ +     E+ + +++
Sbjct: 249 WCAFICPAEAIEVEKPFKGEVIIDVDA 275



 Score = 41.3 bits (96), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 2   TYVVTENCILCKHTDCVEVCPVDCFYEGENF---LAIHPDECIDCGVCEPECPVDAIKPD 58
           T V  + C+ C    C  +CP +     + F   + I  D C  CG C   CP  A++  
Sbjct: 237 TVVDKDACVTCGW--CAFICPAEAIEVEKPFKGEVIIDVDACNACGACVAICPCGALEFP 294

Query: 59  TEPG 62
               
Sbjct: 295 MPKD 298



 Score = 40.5 bits (94), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 7   ENCILCKHTDCVEVCPVDCFY--------EGENFLAIHPDECIDCGVCEPECPVDAIK 56
           + C  C    CV +CP             E    L I+ + C+ CG C   CP++AIK
Sbjct: 274 DACNACG--ACVAICPCGALEFPMPKDKAEKVPRLIINQNLCVLCGACSKACPINAIK 329



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 14/60 (23%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLA-----------IHPDECIDCGVCEPECPVDAI 55
           + C+LC+   C  VCP     E E  LA           I+ ++C+ CG+C   CP DAI
Sbjct: 115 DKCVLCEQ--CEMVCPQSAI-EVEKTLAERSKFVIGEVNINKEKCVLCGICADYCPADAI 171



 Score = 34.4 bits (78), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 13/61 (21%)

Query: 7   ENCILCKHTDCVEVCPVDCF-----YEGENF------LAIHPDECIDCGVCEPECPVDAI 55
           E C+LC    C + CP D       Y   +       + ++ D+C+ C VCE  CP +AI
Sbjct: 154 EKCVLCG--ICADYCPADAIDLKYCYPTPSNPKPITDIEVNSDKCVYCKVCEFVCPHNAI 211

Query: 56  K 56
           +
Sbjct: 212 E 212


>gi|226947232|ref|YP_002802323.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841217|gb|ACO83883.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 387

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 5   VTENCILCKHTDCVEVCP-----VDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIK 56
           + E CI C    C EVCP     ++   +G   +   +  +CI C  C+  CP  AI+
Sbjct: 317 IEEKCIGCN--RCAEVCPEKPYVINMIKKGGKKIPVWNMKKCIRCFCCQELCPKGAIE 372



 Score = 34.0 bits (77), Expect = 7.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 27  YEGENFLAIHP------------------DECIDCGVCEPECP 51
            EG +F  I+P                  ++CI C  C   CP
Sbjct: 290 REGGDFYFINPKVTNFLKDIIAPDPTLIEEKCIGCNRCAEVCP 332


>gi|270308191|ref|YP_003330249.1| iron-sulfur cluster-binding protein, ferredoxin-like protein
           [Dehalococcoides sp. VS]
 gi|270154083|gb|ACZ61921.1| iron-sulfur cluster-binding protein, ferredoxin-like protein
           [Dehalococcoides sp. VS]
          Length = 136

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAI--HPDECIDCGVCEPECPVDAIK 56
           C  C    CV +CPVD F        I     +CI CG+C   CP  A++
Sbjct: 86  CTHCG--ACVTMCPVDAFSIDSESREIKFDAKKCIVCGICIQSCPPRAME 133



 Score = 34.4 bits (78), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
           + + C  CG C   CPVDA   D+E     +
Sbjct: 82  NENRCTHCGACVTMCPVDAFSIDSESREIKF 112


>gi|146304647|ref|YP_001191963.1| NADH dehydrogenase subunit I [Metallosphaera sedula DSM 5348]
 gi|145702897|gb|ABP96039.1| NADH-quinone oxidoreductase, chain I [Metallosphaera sedula DSM
           5348]
          Length = 169

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENFLAIHPDECIDCGVCEPECPVDAIKP 57
           + CI C  T C  VCP D       +G+ F  I+   C+ C  C   CPVDA+K 
Sbjct: 63  DVCIGC--TLCAMVCPADAMKMVTDQGKKFPTINYGRCVFCAFCVDICPVDALKE 115



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 32 FLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           + ++ D CI C +C   CP DA+K  T+ G + +  IN
Sbjct: 57 MIRLYKDVCIGCTLCAMVCPADAMKMVTDQG-KKFPTIN 94


>gi|91773352|ref|YP_566044.1| ferredoxin [Methanococcoides burtonii DSM 6242]
 gi|91712367|gb|ABE52294.1| electron transport complex rnfB-like protein [Methanococcoides
           burtonii DSM 6242]
          Length = 265

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI CK   C + CP D          +  D+C  CG+C  +CP + I+
Sbjct: 218 CIGCK--ICEKNCPEDAIKVTNFLAEVDQDKCTACGICVEKCPQNCIE 263



 Score = 38.6 bits (89), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 17  CVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKIN 70
           CV  CP       EN L +++ + C  CG+C   CP D I    +   ++ ++ N
Sbjct: 149 CVRACPFGAISINENRLPSVNKNLCTSCGLCLAACPND-ILMFAKDSEQVHVQCN 202


>gi|116754635|ref|YP_843753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Methanosaeta thermophila PT]
 gi|116666086|gb|ABK15113.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
          [Methanosaeta thermophila PT]
          Length = 147

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
          C  C  + C  VC         + +A   D C  CG+C   CP  AI+
Sbjct: 45 CHQCDTSPCTAVCYTGSLRLDGDMVAFDQDLCTRCGLCVVACPFGAIE 92


>gi|194433213|ref|ZP_03065494.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella dysenteriae
           1012]
 gi|194418497|gb|EDX34585.1| formate dehydrogenase-O, iron-sulfur subunit [Shigella dysenteriae
           1012]
 gi|332085182|gb|EGI90360.1| formate dehydrogenase, beta subunit [Shigella dysenteriae 155-74]
          Length = 300

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPGLE 64
           + C+ C    C++ CP +    +  N +     + CI CG C   CP D I         
Sbjct: 98  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSELCIGCGYCIAGCPFD-IPRLNPEDNR 156

Query: 65  LW 66
           ++
Sbjct: 157 VY 158



 Score = 37.4 bits (86), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 17/70 (24%)

Query: 6   TENCILCKHTDCVEVCPVD--CFYEGENFLAIHPDECIDCG---------VCEPECPVDA 54
           +E CI C +  C+  CP D       +N +     +C  C           C   CP  A
Sbjct: 130 SELCIGCGY--CIAGCPFDIPRLNPEDNRVY----KCTLCVDRVVVGQEPACVKTCPTGA 183

Query: 55  IKPDTEPGLE 64
           I   T+  ++
Sbjct: 184 IHFGTKESMK 193


>gi|113969230|ref|YP_733023.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113883914|gb|ABI37966.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 476

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CVEVCP      +G  +      ECI+CG C   C
Sbjct: 275 DCVDCNL--CVEVCPTGIDIRQGLQY------ECINCGACVDAC 310


>gi|219670117|ref|YP_002460552.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium
           hafniense DCB-2]
 gi|219540377|gb|ACL22116.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium
           hafniense DCB-2]
          Length = 290

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCF--YEGENFLAIHPDECIDCGVCEPECPVDA 54
           + CI C    C  VCP      +  E  L++    C  CG C   CP  A
Sbjct: 164 DQCIYCGL--CQAVCPAKAIEVHRQEETLSLDSQLCTYCGKCVKSCPTSA 211



 Score = 39.4 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 38  DECIDCGVCEPECPVDAIK 56
           D+CI CG+C+  CP  AI+
Sbjct: 164 DQCIYCGLCQAVCPAKAIE 182


>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
           2162]
 gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
           2162]
          Length = 280

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPD---ECIDCGVCEPECPVDAIK 56
           V  E C   K + C   CP   F    + + +  D   EC  C +CE  CP  A+K
Sbjct: 176 VNAEKCQGTKCSRCANTCPKGVFEASGDAIRVKEDRVLECTFCRLCENTCPAGAVK 231


>gi|317498193|ref|ZP_07956494.1| electron transfer flavoprotein domain-containing protein
          [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894548|gb|EFV16729.1| electron transfer flavoprotein domain-containing protein
          [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 397

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C LC    CVE CP       +N + +  D C  CG+C  +CP  AI  + + G
Sbjct: 11 CSLCG--KCVEKCPFGALSFEDNGIVVG-DTCRMCGMCVRQCPEKAISFEQKAG 61


>gi|312621527|ref|YP_004023140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201994|gb|ADQ45321.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 373

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 6   TENCILCKHTDCVEVCPVDCFYEGENF-LAIHPDECIDCGVCEPECPVDA 54
           T  C+ C    CV+ C        E     I  ++C+ CG C   C   A
Sbjct: 193 TSKCVGCG--MCVKSCAQLAITLNEKKKAVIDYEKCVGCGQCVAVCQFGA 240


>gi|307297315|ref|ZP_07577121.1| iron-sulfur cluster-binding protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916575|gb|EFN46957.1| iron-sulfur cluster-binding protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 357

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           E C  C    C   CP        N  AI  ++CI C VC   CP DAI
Sbjct: 305 ERCRSC--RVCENACPAKAIDI--NRFAIDYNKCITCYVCHELCPEDAI 349



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 35  IHPDECIDCGVCEPECPVDAI 55
           I  + C  C VCE  CP  AI
Sbjct: 302 IDRERCRSCRVCENACPAKAI 322


>gi|303242615|ref|ZP_07329090.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2]
 gi|302589823|gb|EFL59596.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2]
          Length = 395

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 4   VVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
            + + CI C    C+  CP                +CI C  C+  CP  AI+
Sbjct: 318 FIQDKCIGCGD--CMRSCPPKVIQMKNKKPEAKLSKCIRCFCCQEMCPAKAIE 368


>gi|295106049|emb|CBL03592.1| 4Fe-4S binding domain. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 184

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAI-HPDECIDCGVCEPECPVD 53
          C  C+   C++ CP    Y   +   +    +CI C +C   CP  
Sbjct: 49 CNHCEEPICLKNCPTGAIYRAPDGTVVQDQSKCIGCRMCVMSCPYG 94


>gi|257063297|ref|YP_003142969.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256790950|gb|ACV21620.1| Fe-S-cluster-containing hydrogenase subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 208

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLA--IHPDECIDCGVCEPECPVD 53
           C  C++  C+ VCP    Y  E      I+ +ECI C  C   CP  
Sbjct: 58  CQQCENPGCIAVCPTGASYRDEETGVVLINEEECIGCQSCMTGCPYG 104


>gi|269798703|ref|YP_003312603.1| nitroreductase [Veillonella parvula DSM 2008]
 gi|269095332|gb|ACZ25323.1| nitroreductase [Veillonella parvula DSM 2008]
          Length = 271

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       +         CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRCGL--CVADCPTGLLVMSDAGPVTGRGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|193212916|ref|YP_001998869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
          [Chlorobaculum parvum NCIB 8327]
 gi|193086393|gb|ACF11669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Chlorobaculum parvum NCIB 8327]
          Length = 62

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV+    G     I    C +C       +C   CP + 
Sbjct: 1  MALYITEECTYCG--ACEPECPVNAISAGSEIYVIDAASCTECEGYADAPLCVAVCPAEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|46199706|ref|YP_005373.1| anaerobic dimethyl sulfoxide reductase chain B [Thermus
           thermophilus HB27]
 gi|46197332|gb|AAS81746.1| anaerobic dimethyl sulfoxide reductase chain B [Thermus
           thermophilus HB27]
          Length = 775

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 9   CILCKHTDCVEVCPVDCFY---EGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLEL 65
           C  C+   C  VCPV       EG N +  +   C+    C   CP  A + +  P  E 
Sbjct: 591 CQHCEKAPCEAVCPVAATEHSPEGLNLMVYN--RCVGTKYCSANCPYKARRFNFFPYAEA 648

Query: 66  WL 67
           ++
Sbjct: 649 FI 650


>gi|32267094|ref|NP_861126.1| NADH dehydrogenase subunit I [Helicobacter hepaticus ATCC 51449]
 gi|81665422|sp|Q7VFT0|NUOI_HELHP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|32263146|gb|AAP78192.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 212

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----EGENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C ++C  +C      +GE+        +I+   CI CG+C   CP  AI 
Sbjct: 83  ERCIGCGL--CEKICTSNCIRIITDKGEDGRKKILNYSINFGRCIYCGLCAEVCPELAIV 140

Query: 57  PDT 59
              
Sbjct: 141 HGD 143



 Score = 34.4 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 25  CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKI 69
             ++ +  L    + CI CG+CE  C  + I+  T+ G +   KI
Sbjct: 70  AIHKLQRLLESENERCIGCGLCEKICTSNCIRIITDKGEDGRKKI 114


>gi|24372077|ref|NP_716119.1| formate-dependent nitrite reductase, nrfC protein [Shewanella
           oneidensis MR-1]
 gi|24345958|gb|AAN53564.1|AE015496_8 formate-dependent nitrite reductase, nrfC protein [Shewanella
           oneidensis MR-1]
          Length = 235

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGENF--LAIHPDECIDCGVCEPECPVDA 54
           +C  CK+  CV VCP    +       + +   +C  C  C   CP +A
Sbjct: 105 SCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNA 153


>gi|332158425|ref|YP_004423704.1| hypothetical protein PNA2_0784 [Pyrococcus sp. NA2]
 gi|331033888|gb|AEC51700.1| hypothetical protein PNA2_0784 [Pyrococcus sp. NA2]
          Length = 649

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 8   NCILCKHTDCVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIK 56
            C+ C    CV  CP +     +    + + P++C  C  C   CP+  IK
Sbjct: 576 ECVGCGV--CVTTCPEEAISIDDKRKKIVVFPEKCTHCRECMSVCPLVVIK 624



 Score = 40.9 bits (95), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 39  ECIDCGVCEPECPVDAIKPDTE 60
           EC+ CGVC   CP +AI  D +
Sbjct: 576 ECVGCGVCVTTCPEEAISIDDK 597


>gi|313673818|ref|YP_004051929.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940574|gb|ADR19766.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 577

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 3   YVVTENCILCKHTDCVEV-CPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55
           Y+  + C  C    C  + CP   + + +    I    C  CG+C   C   AI
Sbjct: 521 YIDPDKCTGC--RACTRIGCPAISWIKKDRKAFIDEAICTGCGLCIKVCRFGAI 572



 Score = 34.4 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 1/21 (4%)

Query: 33  LAIHPDECIDCGVCEPE-CPV 52
             I PD+C  C  C    CP 
Sbjct: 520 FYIDPDKCTGCRACTRIGCPA 540


>gi|323525444|ref|YP_004227597.1| NADH-quinone oxidoreductase subunit I [Burkholderia sp. CCGE1001]
 gi|323382446|gb|ADX54537.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1001]
          Length = 162

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFY----------EGENFLAIHPDECIDCGVCEPECPVDAI 55
           E CI CK   C  VCP                      I   +CI CG CE  CPVD+I
Sbjct: 61  ERCIACKL--CEAVCPALAITIESETREDNTRRTTRYDIDLTKCIFCGFCEESCPVDSI 117



 Score = 35.9 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 38 DECIDCGVCEPECPVDAIKPDTE 60
          + CI C +CE  CP  AI  ++E
Sbjct: 61 ERCIACKLCEAVCPALAITIESE 83


>gi|223040732|ref|ZP_03611000.1| iron-sulfur cluster-binding domain protein [Campylobacter rectus
           RM3267]
 gi|222878016|gb|EEF13129.1| iron-sulfur cluster-binding domain protein [Campylobacter rectus
           RM3267]
          Length = 556

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 17  CVEVCPVDCFYEGEN--FLAIHPDECIDCGVCEPECPVDAIKPDTEP 61
           CVE CP     + +    L     +CI+CG C   CP  A+     P
Sbjct: 211 CVEACPTVAILKEDETKHLVFSHIDCINCGGCVSVCPSGALDYSDMP 257



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPV-DAIKP-----D 58
           + C LC    CV  C V      +  N +  +P  C  CG CE  C   D I       D
Sbjct: 420 DTCTLCL--SCVGACNVAALVADKKTNSIVFNPSVCTACGYCELSCAEKDTIFLRPGKID 477

Query: 59  TEPGLELWLKINSE 72
            EPG   + ++  +
Sbjct: 478 LEPGFFAFSELARD 491



 Score = 33.6 bits (76), Expect = 8.6,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 43  CGVCEPECPVDAIKPDTEPGLELWLKIN 70
           CG C   CP  AI  + E    ++  I+
Sbjct: 208 CGRCVEACPTVAILKEDETKHLVFSHID 235


>gi|218890264|ref|YP_002439128.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           LESB58]
 gi|218770487|emb|CAW26252.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 774

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 4   VVTENCILCKHTDCVEVCPV----------DCFYEGENFLAIHPDECIDCGVCEPECP 51
           V    CI C    C +VCPV              E E  LA +  +CI+CG C   CP
Sbjct: 364 VPAMPCIRCGD--CAQVCPVSLLPQQLHFFALGNEHEQLLAHNLFDCIECGACAYVCP 419


>gi|167767194|ref|ZP_02439247.1| hypothetical protein CLOSS21_01713 [Clostridium sp. SS2/1]
 gi|167711169|gb|EDS21748.1| hypothetical protein CLOSS21_01713 [Clostridium sp. SS2/1]
 gi|291559481|emb|CBL38281.1| Electron transfer flavoprotein, alpha subunit [butyrate-producing
          bacterium SSC/2]
          Length = 397

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPG 62
          C LC    CVE CP       +N + +  D C  CG+C  +CP  AI  + + G
Sbjct: 11 CSLCG--KCVEKCPFGALSFEDNGIVVG-DTCRMCGMCVRQCPEKAISFEQKAG 61


>gi|154149243|ref|YP_001405797.1| NADH dehydrogenase subunit I [Campylobacter hominis ATCC BAA-381]
 gi|189030926|sp|A7HZV6|NUOI_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|153805252|gb|ABS52259.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit
           i) (ndh-1 subunit i) [Campylobacter hominis ATCC
           BAA-381]
          Length = 200

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 7   ENCILCKHTDCVEVCPVDCFYE----GENF------LAIHPDECIDCGVCEPECPVDAIK 56
           E CI C    C ++C  +C       G++        +I+   C+ CG+C   CP  AI 
Sbjct: 80  ERCIGCGL--CEKICVSNCIRMETTLGDDGRKKVLNYSINFGRCVYCGLCADVCPELAIV 137

Query: 57  PDTEPGLELWLKINSEYATQWPNITTKKESLPSAAKMDG 95
                G   +      +     ++ TK + L +  +  G
Sbjct: 138 H---GGDYEFASEQRAFFGFKKDLLTKYDELKNQKEFTG 173



 Score = 35.1 bits (80), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 21  CPVDCFYEGENFLAIHP---------DECIDCGVCEPECPVDAIKPDTEPGLE 64
            P++ F   + +  IH          + CI CG+CE  C  + I+ +T  G +
Sbjct: 54  YPMEKFELSDRYRGIHKLLRLLESGNERCIGCGLCEKICVSNCIRMETTLGDD 106


>gi|197117746|ref|YP_002138173.1| electron transfer flavoprotein subunit alpha [Geobacter
          bemidjiensis Bem]
 gi|197087106|gb|ACH38377.1| electron transfer flavoprotein, alpha subunit [Geobacter
          bemidjiensis Bem]
          Length = 452

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDA--IKPDTEPGLEL 65
          CI C    C   CPVD     +     I   +CI C  C   CP  A  I    E     
Sbjct: 22 CIACGAR-CQSSCPVDGIQMSDAGEPQIELSKCIGCLKCVKACPGSALEIFYTKEE---- 76

Query: 66 WLKINSEYA 74
           L+I +  A
Sbjct: 77 -LEILAALA 84


>gi|117921666|ref|YP_870858.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117613998|gb|ABK49452.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 477

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +C+ C    CVEVCP      +G  +      ECI+CG C   C
Sbjct: 276 DCVDCNL--CVEVCPTGIDIRQGLQY------ECINCGACVDAC 311


>gi|332161837|ref|YP_004298414.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666067|gb|ADZ42711.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 618

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 18/60 (30%)

Query: 7   ENCILCKHTDCVEVCPVDC-------FYEGENFL------AIHPDECIDCGVCEPECPVD 53
           ++CI C    CV+ CP          F  GE               CI+CG C   CP +
Sbjct: 375 QSCIRCGL--CVDACPAGLLPQQLYWFSRGEEHEKARNHNIFD---CIECGACAYVCPSN 429



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 12  CKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVD 53
            K ++C+         E E  L+     CI CG+C   CP  
Sbjct: 354 VKISNCIL-----APTEAEMGLSEPEQSCIRCGLCVDACPAG 390


>gi|315292771|gb|EFU52123.1| formate dehydrogenase, beta subunit [Escherichia coli MS 153-1]
          Length = 286

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 7   ENCILCKHTDCVEVCPVD-CFYEGENFLA-IHPDECIDCGVCEPECPVD 53
           + C+ C    C++ CP +    +  N +     ++CI CG C   CP D
Sbjct: 84  DGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFD 132


>gi|313675720|ref|YP_004053716.1| cytochrome c oxidase accessory protein ccog [Marivirga tractuosa
           DSM 4126]
 gi|312942418|gb|ADR21608.1| cytochrome c oxidase accessory protein CcoG [Marivirga tractuosa
           DSM 4126]
          Length = 469

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 18/67 (26%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC---------PVDAIKP 57
           +CI C    CV+VCP       G         EC++C  C   C         P   I+ 
Sbjct: 264 DCIDCNL--CVQVCPTGIDIRNGTQM------ECVNCTACIDACDEVMTKINKPKGLIRF 315

Query: 58  DTEPGLE 64
           D+E G+E
Sbjct: 316 DSEEGVE 322



 Score = 36.3 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 23/62 (37%)

Query: 15  TDCVEVCPVD----CFYEGENFLAI-------------------HPDECIDCGVCEPECP 51
             C  VCP       F + ++ + I                      +CIDC +C   CP
Sbjct: 217 QACTVVCPYGRLQGVFLDKKSIVVIYDWLRGEPRGKLKKNEPQADKGDCIDCNLCVQVCP 276

Query: 52  VD 53
             
Sbjct: 277 TG 278


>gi|312885980|ref|ZP_07745608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Mucilaginibacter paludis DSM 18603]
 gi|311301517|gb|EFQ78558.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Mucilaginibacter paludis DSM 18603]
          Length = 197

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 31/99 (31%)

Query: 7   ENCILCKHTDCVEVCPVDCFY---------------EGENFLA-----IHPDECIDCGVC 46
           ++CI+C    C +VCPVDC                      L      I   +C+ CG+C
Sbjct: 74  DDCIVCDL--CAKVCPVDCITIDSIKATEAIGQTSDGTTKRLYAAKFDIDMAKCMYCGLC 131

Query: 47  EPECPVDAI---------KPDTEPGLELWLKINSEYATQ 76
              CP + I           D       +  +++E A +
Sbjct: 132 TVVCPTECITMTNQYDKSVQDLNLLTYKFSDMSAEMAEE 170



 Score = 34.7 bits (79), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 29 GENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          G   L +  D+CI C +C   CPVD I  D+
Sbjct: 65 GRYQLDVEMDDCIVCDLCAKVCPVDCITIDS 95


>gi|294792618|ref|ZP_06757765.1| nitroreductase family protein [Veillonella sp. 6_1_27]
 gi|294456517|gb|EFG24880.1| nitroreductase family protein [Veillonella sp. 6_1_27]
          Length = 271

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 1  MTYVV-TENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDT 59
          M + V TE C  C    CV  CP       +         CI CG C   CP  A+  D 
Sbjct: 1  MLFTVNTEVCTRCGL--CVADCPTGLLVMSDAGPVTGRGGCISCGHCISVCPTLALDSDM 58

Query: 60 EPGLEL 65
           P  E 
Sbjct: 59 TPRKEQ 64


>gi|291563874|emb|CBL42690.1| 4Fe-4S binding domain [butyrate-producing bacterium SS3/4]
          Length = 274

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 12/59 (20%)

Query: 7   ENCILCKHTDCVEVCPVDCFYEGENFLAIHPDE----CIDCGVCEPECPVDAIKPDTEP 61
           E C  C    C  VCP+    +        PD     CI C  C   CP  A   D E 
Sbjct: 202 EKCTKCG--ICATVCPMGSIPKDA------PDTCTGICIKCHACIKACPAGAKYFDDEA 252



 Score = 37.8 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEP 61
            P++C  CG+C   CP+ +I  D   
Sbjct: 200 DPEKCTKCGICATVCPMGSIPKDAPD 225


>gi|242239209|ref|YP_002987390.1| nitrate reductase subunit beta [Dickeya dadantii Ech703]
 gi|242131266|gb|ACS85568.1| nitrate reductase, beta subunit [Dickeya dadantii Ech703]
          Length = 520

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 9   CILCKHTDCVEVCPVDCFY-EGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           C  C +  CV  CP    Y   E+ +  I  D+C    +C   CP   I  + + G
Sbjct: 183 CEHCLNPACVATCPSGAIYKRAEDGIVLIDQDKCRGWRMCLTGCPYKKIYFNWKSG 238


>gi|283796028|ref|ZP_06345181.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           sp. M62/1]
 gi|291076236|gb|EFE13600.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           sp. M62/1]
          Length = 263

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
           CI C  T C + C  D  +   N   I  ++C +CG C  +CPV  IK
Sbjct: 218 CIGC--TLCTKQCEFDAIHMDNNVAVIDYEKCTNCGKCAEKCPVKVIK 263



 Score = 42.8 bits (100), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 13  KHTDCVEVCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAIK 56
               CV  C  D  +  +    +  ++C+ CG C   CP   I+
Sbjct: 146 GFGSCVAACQFDAIHVVDGIAVVDKEKCVACGKCVAACPQKLIE 189


>gi|90411251|ref|ZP_01219263.1| TtrB [Photobacterium profundum 3TCK]
 gi|90327780|gb|EAS44111.1| TtrB [Photobacterium profundum 3TCK]
          Length = 237

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 9   CILCKHTDCVEVCPVDC-FYEGENFLAI-HPDECIDCGVCEPECPVD 53
           C  C +  C +VCP    F   E+ + +     CIDC  C   CP D
Sbjct: 94  CNQCDNPVCTKVCPTGATFKRKEDGIVVVDSTGCIDCNFCVYTCPYD 140


>gi|88602166|ref|YP_502344.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
          JF-1]
 gi|88187628|gb|ABD40625.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
          hungatei JF-1]
          Length = 102

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 9  CILCKHTDCVEVCPVDCFYEGENFL-AIHPDECIDCGVCEPECPVDAIKPDT 59
          CI CK   C EVCP   F  G++ +  ++   C++CG C   CPV AI+ ++
Sbjct: 17 CINCK--RCTEVCPHGVFSAGKSHVNLVYQVRCMECGACALNCPVQAIEVES 66


>gi|78189049|ref|YP_379387.1| ferredoxin, 4Fe-4S [Chlorobium chlorochromatii CaD3]
 gi|78171248|gb|ABB28344.1| ferredoxin, 4Fe-4S [Chlorobium chlorochromatii CaD3]
          Length = 62

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   +TE C  C    C   CPV     G++   I    C +C        C   CP + 
Sbjct: 1  MALFITEECTYCG--ACEPECPVSAITAGDDIYVIDAAGCTECVGYADAPACVAVCPAEC 58

Query: 55 I 55
          I
Sbjct: 59 I 59


>gi|326800094|ref|YP_004317913.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
 gi|326550858|gb|ADZ79243.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
          Length = 189

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPDE--CIDCGVCEPECPVDAIKPDTEPGL 63
           C+ C++  C  VCP D  ++ +  +    +   CI C  C   CP    K   E  L
Sbjct: 59  CMHCENPACANVCPADAIHQDDFGVVHSANTPRCIGCSNCVLACPFGVPKKMEEAEL 115


>gi|257464597|ref|ZP_05628968.1| formate dehydrogenase, beta subunit [Actinobacillus minor 202]
 gi|257450257|gb|EEV24300.1| formate dehydrogenase, beta subunit [Actinobacillus minor 202]
          Length = 301

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 7   ENCILCKHTDCVEVCPV-DCFYEGENFLA-IHPDECIDCGVCEPECPVDAIKPDTEPG 62
           + C+ C    C++ CP      +  N +     D+CI CG C   CP +  + + E  
Sbjct: 99  DGCMHCAEPGCLKACPAPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNDEDN 156


>gi|253682180|ref|ZP_04862977.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum D str. 1873]
 gi|253561892|gb|EES91344.1| glycyl-radical enzyme activating family protein [Clostridium
           botulinum D str. 1873]
          Length = 315

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 9   CILCKHTDCVEVCPVDCFYEGENFLAIHPD-ECIDCGVCEPECPVDAI 55
           CI C    CV  CPV       +   I+ D +CI CG C+  C   AI
Sbjct: 64  CINCG--ACVSACPVGIHTIYNSKHVINRDIDCIGCGKCKEVCLKSAI 109


>gi|229590219|ref|YP_002872338.1| putative ferredoxin [Pseudomonas fluorescens SBW25]
 gi|229362085|emb|CAY48987.1| putative ferredoxin [Pseudomonas fluorescens SBW25]
          Length = 469

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 9/44 (20%)

Query: 8   NCILCKHTDCVEVCPVDC-FYEGENFLAIHPDECIDCGVCEPEC 50
           +CI C    CV+VCP      +G         ECI C  C   C
Sbjct: 267 DCIDC--QLCVQVCPTGIDIRDGLQM------ECIGCAACIDAC 302



 Score = 36.7 bits (84), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 25/62 (40%)

Query: 17  CVEVCPVDCF--------------------YEGENFLAIHPDE-----CIDCGVCEPECP 51
           C+ +CP   F                    + G     + P +     CIDC +C   CP
Sbjct: 220 CMHMCPYARFQSVMFDKDTLTISYDVARGEHRGPRKREVKPADVGLGDCIDCQLCVQVCP 279

Query: 52  VD 53
             
Sbjct: 280 TG 281


>gi|224369370|ref|YP_002603534.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
 gi|223692087|gb|ACN15370.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
          Length = 1161

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 20/70 (28%)

Query: 4   VVTENCILCKHTDCVEVCPV---DCFYEG---------------ENFLAIHPDECIDCGV 45
           V    C  C    C +VCPV   D F  G                N   I  + C  CG 
Sbjct: 113 VDPNRCTGCNL--CAQVCPVSIDDPFNHGLSRTKAIYLPVPHAVPNIYTIDMNHCTLCGE 170

Query: 46  CEPECPVDAI 55
           CE  CP DAI
Sbjct: 171 CEQTCPFDAI 180



 Score = 45.1 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 9    CILCKHTDCVEVCPVDC--FYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELW 66
            C +C    C++ C           N + I P  C  CG C   C   A   +     +++
Sbjct: 1097 CSVCG--RCIDACAFGARTLDPDTNRIKIDPIICQGCGACASVCTNSAAYVNNFLDQQMF 1154

Query: 67   LKINSE 72
              I++ 
Sbjct: 1155 EIIDAA 1160


>gi|197117614|ref|YP_002138041.1| iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197086974|gb|ACH38245.1| iron-sulfur cluster-binding oxidoreductase [Geobacter bemidjiensis
           Bem]
          Length = 432

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 6   TEN--CILCKHTDCVEVCPVDCFY-----EGENFLA---IHPDECIDCGVCEPECPVDAI 55
           T+   C  C    CV +CPVD        EG    A   ++ + C+ CGVC   C   A+
Sbjct: 287 TDPARCDGCG--RCVAICPVDAISLVREPEGSGMPAKARLNSELCLGCGVCARNCHNKAV 344

Query: 56  KPDTEP 61
           + +   
Sbjct: 345 RLEARE 350



 Score = 42.8 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 36  HPDECIDCGVCEPECPVDAIKPDTEP---GLELWLKINSEY 73
            P  C  CG C   CPVDAI    EP   G+    ++NSE 
Sbjct: 288 DPARCDGCGRCVAICPVDAISLVREPEGSGMPAKARLNSEL 328


>gi|120611158|ref|YP_970836.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           citrulli AAC00-1]
 gi|120589622|gb|ABM33062.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           citrulli AAC00-1]
          Length = 243

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 4   VVTE-NCILCKHTDCVEVCPVDCFYEG-ENFLAIHPDECIDCGVCEPECPVDAIKPD--- 58
           V+ E  CI C  T C++ CP D      +    +    C  C +C P CPVD I  +   
Sbjct: 87  VIDELACIGC--TLCIKACPTDAILGTHKRMHTVIEAHCTGCELCIPVCPVDCITMENAT 144

Query: 59  -TEPGLELWLKINSEYATQWPNITTKKESLPSAA 91
               G   W    +  A Q       + + P A 
Sbjct: 145 GDATGWAAWSATQAGQARQRYQAHRLRAA-PDAE 177



 Score = 38.6 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 25  CFYEGENFL-AIHPDECIDCGVCEPECPVDAI 55
           C  E    L  I    CI C +C   CP DAI
Sbjct: 77  CGAEAPRGLAVIDELACIGCTLCIKACPTDAI 108


>gi|78485655|ref|YP_391580.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thiomicrospira crunogena
          XCL-2]
 gi|78363941|gb|ABB41906.1| 4Fe-4S ferredoxin [Thiomicrospira crunogena XCL-2]
          Length = 85

 Score = 46.7 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 1  MTYVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDCG------VCEPECPVDA 54
          M   + E C  C    C   CP    + GE    I+PD C +C        C   CPVD 
Sbjct: 1  MALKILEGCTNCD--MCEPECPNQAIFYGEKIYEINPDLCTECVGYYDTPTCVSVCPVDC 58

Query: 55 IKPDTEP 61
          I  D E 
Sbjct: 59 IITDPEH 65


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.165    0.672 

Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,954,649,108
Number of Sequences: 14124377
Number of extensions: 139040846
Number of successful extensions: 499422
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 22918
Number of HSP's successfully gapped in prelim test: 14845
Number of HSP's that attempted gapping in prelim test: 397856
Number of HSP's gapped (non-prelim): 82132
length of query: 113
length of database: 4,842,793,630
effective HSP length: 81
effective length of query: 32
effective length of database: 3,698,719,093
effective search space: 118359010976
effective search space used: 118359010976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 76 (33.6 bits)